BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans
isomerase D signal peptide protein [Candidatus Liberibacter asiaticus
str. psy62]
(631 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|220925415|ref|YP_002500717.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
nodulans ORS 2060]
gi|219950022|gb|ACL60414.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
nodulans ORS 2060]
Length = 632
Score = 346 bits (886), Expect = 7e-93, Method: Composition-based stats.
Identities = 162/637 (25%), Positives = 317/637 (49%), Gaps = 13/637 (2%)
Query: 1 MLEIIRKASRTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML+ R AS++W+ KI + +L I+G+ D +F SGSSTV +VG K+ +
Sbjct: 1 MLQGFRAASQSWLGKIVITVVFGLLIAGLAIFGIGD-IFRGSGSSTVATVGSTKISAEAV 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++++ ++ +++++ + ++AR++GLD+++L LV+ ATLDQ D+GL V
Sbjct: 60 RSAYQNQIQRLARQVRRPITPDQARALGLDREVLSALVTEATLDQKTRDLGLRVSDDTVI 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F G + F +F L + G++E ++ + +R + +
Sbjct: 120 RLIKEEPAFKGANGAFDIALFNDTLRQAGLSEAAFVQEQRAVAARLQLAEAITADLPVPL 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + R+ E R+ +I+L I P++ + ++++++ +RAPEY+ ++ ++
Sbjct: 180 AVREAIHRYTAERRAAAFILLPESAAGEIPAPTDEEVKTYYDEHRSAFRAPEYRSVNLLV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
D K +++ E +A Y+ +K +Y +PE RT++Q+VFPN+ +A A ++ G+
Sbjct: 240 LDPATLAKPDAVTDAEARARYDADKSRYGTPERRTIQQIVFPNEADAAAALARIRSGEAP 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F +A E+G + LG+FS+ + D ++AD+ ++G + + G FG V+ V+
Sbjct: 300 FESIAGERGLDPKSLDLGTFSRSELFDPAVADAA-FGLQQGVVSEPVKGRFGTVLLRVTA 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
I+P ++EV I ++ +A + +++ + +E+ A + EI+R ++ I +
Sbjct: 359 IEPGSVKPYEEVAGQIRTEIARERAGDNLEKVHDAIEDQRAGAKPLAEIARERELPLITV 418
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
VD G+D +GK V +P K+ +L +F + + G Y+W I + PA
Sbjct: 419 ASVDAQGRDPQGKPVEGLPDKDAVLPALFRAEMGAD-SEALRTRSGGYVWYDIVKVDPAH 477
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
DR L EV DV WK + +S+KA + K G+ + +LG T + +
Sbjct: 478 DRPLPEVRDDVVAQWKAEEVERRLSAKAREAAERLDK-GEAIEAVASSLGLEAKTASDLA 536
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--FISY 593
R + I ++F+ PV+ + + FKVT++ V P+ +
Sbjct: 537 R-GRAKDGLTPESIGRIFATPVDKTGSASAGDKVRVA-FKVTSATVPPLAAGSQGNVEQQ 594
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
+ D+L IA + + V+++++ +R + GE
Sbjct: 595 FRSALADDILAQYIADARKEAGVSINESAFRRAIGGE 631
>gi|158423833|ref|YP_001525125.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Azorhizobium caulinodans ORS 571]
gi|158330722|dbj|BAF88207.1| PPIC-type PPIASE domain protein [Azorhizobium caulinodans ORS 571]
Length = 638
Score = 341 bits (873), Expect = 2e-91, Method: Composition-based stats.
Identities = 159/631 (25%), Positives = 310/631 (49%), Gaps = 6/631 (0%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ +RK + +AK+FL+VL V F++WG+S +F+ + TV +G ++ ++ +
Sbjct: 11 LQNLRKGASGLIAKVFLLVLTVSFVLWGISG-VFTNYSTGTVAEIGGTQISTDAYRQQYL 69
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
++ I ++ G + ++AR+ G D+++L+ +++ ATLD+ +GL + I
Sbjct: 70 DQIQRIGRQAGRAITPDQARAFGFDRQVLNQMITEATLDEAARKLGLGMSDALIADSIRD 129
Query: 122 SPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P F F L G+ E+ ++ K + R ++ +GG R +L
Sbjct: 130 NPALRPPGATAFDPAYFQQLLQANGLTEQRFLASERKRVLRQQLIE-SLGGARAPEVLKT 188
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
F E R+V Y+ + + VPA A P++ L +++ +K +RAPEY++++ ++
Sbjct: 189 AVHSFENEERAVSYLDVTSSSVPAPAAPTDEQLKAYYDGHKVVFRAPEYRKLTLLVLTPA 248
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
I+IS+ + +A Y++N ++ +PE R V+Q+VFP++ +A A +K G F +A
Sbjct: 249 TLAPWIQISDADAKAAYDRNAARFGTPEQRDVQQIVFPSEADAKAALDKIKGGTSFADIA 308
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ +G S D +LG +K I D +AD+ F+L G + + G FGY + HV+ I P+
Sbjct: 309 KARGLSDKDTNLGLVAKSAIIDPKVADAAFALPADG-TSDPVQGRFGYALVHVTTIVPAT 367
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
F EV+ + + + +A ++ + + +E+ + G S+ E +++ + + VD
Sbjct: 368 VKPFAEVEAGLRRDLALERARRELLDKHDAIEDERSSGASLSETAQKLGLTPEVVDAVDR 427
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+G++ G EV IP + +L F + D +G Y+W + E P+R+R +
Sbjct: 428 SGREPSGAEVTDIPDRVNVLSAAFSSRPGVDNDPIQLAQNGGYVWFDVNEVTPSRERPFD 487
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V W + V +KA L+ E + GK+ D+ G + T + + R
Sbjct: 488 EVREQVASRWSEDEVVRAVEAKAKGLLTEL-EAGKSMADVASANGLEVKTASGLKR-GRA 545
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
F + +++VF + +VF+VT + P + + L Q +
Sbjct: 546 EGDFTTEAVAKVFGVALNGYGVALGTANAEQLVFQVTKVESPPSANDIRIDNQLQQQVEN 605
Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
D+L + L+ Q +T++ +Q+ + +
Sbjct: 606 DILQQYLTALQGQIGLTINQRAVQQAVGANQ 636
>gi|170743494|ref|YP_001772149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
4-46]
gi|168197768|gb|ACA19715.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
4-46]
Length = 632
Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats.
Identities = 155/637 (24%), Positives = 304/637 (47%), Gaps = 13/637 (2%)
Query: 1 MLEIIRKASRTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML+ R AS +W+ KI + +L I+G+ D +F G++ V +VG K+ +
Sbjct: 1 MLQGFRAASESWLGKIVITVVFGLLIAGLAIFGIGD-IFRGGGTAAVATVGSTKISAEAV 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++++ ++ ++++ + ++AR++GLD+++L LV+ ATLDQ ++GL V
Sbjct: 60 RSAYQNQIQRLARQARRPITPDQARALGLDREVLSALVTEATLDQKTRELGLRVGDDAVI 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F G + F VF L + G++E ++ + +R + +
Sbjct: 120 RLIKEEPAFKGANGAFDIGVFNDTLRQAGLSEAAFVQEQRAVAARLQLAESLTADLTVPL 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ D R+ E RS +I+L I P+ ++E++K +RAPE + ++ ++
Sbjct: 180 AVRDAIHRYTTERRSAAFILLPESAAGEIPAPTEEEARTYYEEHKGGFRAPEIRGVTILV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
D K ++ +E +A Y+ ++ +Y +PE RT++Q+VFPN+ +A A + ++ G+
Sbjct: 240 LDPTTLAKPDAVTAEEARARYDADRGRYGTPEKRTIQQIVFPNEADAAAALKRIRDGEAP 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F +A E+G + LG+F++ + D ++AD+ +G + + G FG V+ V+
Sbjct: 300 FESIAGERGLDPKSLDLGTFTRAELFDPAVADAA-FALPQGTVSEPVKGRFGTVLLRVTA 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
I+P F+EV I ++ +A + +++ + +E+ A + EI+R + + +
Sbjct: 359 IEPGSIKPFEEVADQIRTEIARERARDGLEKVHDAIEDQRAGAKPLTEIARERDLPLVTV 418
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
P D G+D KG+ V +P K+ +L +F + + G Y+W + PA
Sbjct: 419 PATDAQGRDPKGQPVEGLPDKDAVLPAIFRSEMGAD-SEALRTRAGGYLWYDVTRIDPAH 477
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
DR L+EV V WK + + +++KA + K G+ + G + +
Sbjct: 478 DRPLDEVRDQVAAQWKADEVEKRLAAKAREAAERLDK-GETIEAVAAAYGVEARHASDLA 536
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--FISY 593
R + + ++F+ V + + FKVT++ V P+ +
Sbjct: 537 R-GRAKDGLTPESVGRIFATAVGKTGSASAGDKVRAA-FKVTSATVPPLPSGPQGGVEQQ 594
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
Q + D+L IA + Q V+V++ +R + GE
Sbjct: 595 YRQALADDVLAEYIADAQRQAGVSVNEAAFRRAIGGE 631
>gi|90423968|ref|YP_532338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB18]
gi|90105982|gb|ABD88019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB18]
Length = 662
Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats.
Identities = 172/636 (27%), Positives = 295/636 (46%), Gaps = 15/636 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML IRKAS WV K +++ L + F +WG++D +F G ST+ +G ++ F
Sbjct: 30 MLRGIRKASSNWVGKTIMIIVMSVLILSFAVWGIAD-IFKGFGQSTLAKIGSTEISTEQF 88
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ + L I ++ G + ++AR+ G+D+++L V+ A LD+ IGL
Sbjct: 89 RQLYTERLQQIGRQFGRPLTQDQARAFGIDRQVLQQAVAEAALDEDARRIGLGQSDAETM 148
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F G + F F + + G E+ YI K+ R + G + P
Sbjct: 149 RTIVSDPNFRGTNGGFDRARFAQAIRQFGYTEQRYIAEQRKVSLRRQIAGTLTAELEPPK 208
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
LLD RF E RS+DY+ L+ H IA PS VL ++ +K +RAPEY++IS++
Sbjct: 209 TLLDALTRFQNEQRSIDYVKLDANHAGTIAPPSPEVLAAYYADHKTQFRAPEYRKISFVA 268
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K +S+++ + YE ++K+ +PE R + Q+VFPN +EA A + G F
Sbjct: 269 LTPEAVAKWTTVSDEDAKKVYEARRDKFSTPERRQITQIVFPNAEEAQAARAKITGGLSF 328
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA+E+G S +D LG SK I D ++AD+ D + I G FG + V I
Sbjct: 329 DDLAKERGLSPADADLGLVSKAEILDPAVADAA-FALPANDVSQPIPGRFGVTLLKVGKI 387
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P SF+ V + + I KA + + + ++E+ G S+ E +++ + ++ +
Sbjct: 388 EPGSQQSFESVAPALKRDIAIDKARASIADLHNKMEDARGGGASVVEAAQKLGLAAVTIE 447
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+D +G+ G A IP L F D + D G Y+W + P+R+
Sbjct: 448 ALDRSGRAPDGNPTA-IPQGLDLASAAFSSDVGVDNDALAF--GGGYVWFDVLGVTPSRE 504
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R LEEV V+ W+ + + + +A +V + GK D+ G T R
Sbjct: 505 RSLEEVKPQVEARWRDEQISTRLRDQATDMVQKVEAGGK-LADVAAAAGLKTETATAFKR 563
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFIS 592
+ + F + V P +G ++VF+VT+ V P ++ K
Sbjct: 564 DGSVA-GLPSSVVEAAFRTAKDGVGQAPGLSGGEWIVFRVTDVSVPPVDLASEDAAKLKD 622
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
L + + +LL +A L+++ ++++ + +
Sbjct: 623 TLQRRLADELLAQYVARLETEIGTKINESAVAQATG 658
>gi|115524599|ref|YP_781510.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisA53]
gi|115518546|gb|ABJ06530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisA53]
Length = 633
Score = 337 bits (863), Expect = 4e-90, Method: Composition-based stats.
Identities = 169/636 (26%), Positives = 297/636 (46%), Gaps = 15/636 (2%)
Query: 1 MLEIIRKASRTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML IRKAS W+ KI L VL + F +WG+ D +F G ST ++G ++ F
Sbjct: 1 MLRGIRKASSNWIGKIILSTVMGVLILSFAVWGIGD-IFKGFGRSTAATIGSTEISTEQF 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ + L I ++ G + ++AR+ G+D+++L V+ A LD+ GL
Sbjct: 60 RQLYTERLQQIGRQFGKPLTPDQARAFGIDRQVLQQAVAEAALDEDARRKGLGQSDAETM 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F G KF F L + G E+ YI ++ R + G G+ P
Sbjct: 120 RTILSDPNFKGTAGKFDPARFGQVLRQFGYTEQRYIAEQRRVSLRRQIAGTLTAGLIPPK 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
L+D R+ E R++DY+ L+ H I PS L +F +K+ +RAPEY++ S++
Sbjct: 180 TLIDALGRYQNEQRTIDYVKLDAAHAGPIEPPSPEALAAYFADHKNQFRAPEYRKASFVA 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K +S+++ + YE +EK+ +PE R V Q+VFP +A A + G F
Sbjct: 240 LTPDAVAKWTTVSDEDAKKAYEDRREKFATPERRQVSQIVFPTSADAQAARSKIDGGASF 299
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+E+G S +DI LG +K I D ++A + F+L + ++G FG +A V I
Sbjct: 300 EDIAKERGLSATDIDLGLVAKAGILDPAVAAAAFALPANQ-VSQPVNGRFGVALAKVGAI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P SF+ V D+ + I +A + + + ++E+ G S+ E +++ + ++ +
Sbjct: 359 EPGSQQSFESVAADLKRDIAIERARASISDLHNKMEDDRGGGASVVEAAQKLGLAAVTIE 418
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
VD +G+ G IP +L+ +F D + D G Y+W + P+R+
Sbjct: 419 AVDRSGRTSDGTAAP-IPQGLELVPALFSSDVGVDNDALAF--GGGYVWFDVLGITPSRE 475
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R L+EV V+ W+ + + S+A ++V + G + D G + T R
Sbjct: 476 RSLDEVKPQVEARWRDEQIGNRLRSQATEMVQQ-VNAGTSLADAAAKAGLKVETAASFKR 534
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592
D + F + V P G ++V++VT+ V P+ E +
Sbjct: 535 -DATVAGLPPAAVEAAFRTAKDGVGQAPGAAGGEWIVYRVTDVAVPPIDPNAPEFKQLRD 593
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
L + +N + L +A L++ T++++ + +
Sbjct: 594 NLERRLNDEQLAQYVAKLETDLGTTINESAVAQATG 629
>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
gi|254040835|gb|ACT57631.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 631
Score = 332 bits (849), Expect = 1e-88, Method: Composition-based stats.
Identities = 631/631 (100%), Positives = 631/631 (100%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW
Sbjct: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA
Sbjct: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD
Sbjct: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH
Sbjct: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA
Sbjct: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF
Sbjct: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF
Sbjct: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE
Sbjct: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE
Sbjct: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK
Sbjct: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK
Sbjct: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
>gi|27379919|ref|NP_771448.1| peptidyl-prolyl cis-trans isomerse [Bradyrhizobium japonicum USDA
110]
gi|27353072|dbj|BAC50073.1| blr4808 [Bradyrhizobium japonicum USDA 110]
Length = 632
Score = 327 bits (837), Expect = 3e-87, Method: Composition-based stats.
Identities = 165/639 (25%), Positives = 302/639 (47%), Gaps = 15/639 (2%)
Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML +RKAS W+ K + + VL + F IWG++D +F G STV +GR ++ + F
Sbjct: 1 MLRGMRKASSNWLGKTIMAVVMGVLIISFGIWGIAD-IFRGFGQSTVAKIGRTEISLNEF 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ L IS++ G + ++AR+ GLD+++L ++ A LD+ +GL ++
Sbjct: 60 RQIYTDRLQQISRQFGRPLTPDQARAFGLDRQVLQQTIAEAALDEEARRLGLGQSDDQIR 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F G F + F + + G E+ Y+ K+ R + G G+ P
Sbjct: 120 QVIMNDPNFKGVGGSFDANRFQAVIRNFGYTEQRYVSEQRKVSLRRQLTGTIGAGLEPPK 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
++D RF E R++++ L+ I PS L +FE +K +RAPEY++I++++
Sbjct: 180 AMIDVLTRFQNEQRAIEFARLDAAQAGTIDAPSPEALAAYFEDHKVQFRAPEYRKIAFVV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
E K E+S+++ + +++ K++ +PE R + Q+VFPN EA A + L G F
Sbjct: 240 ISPEEIGKWSEVSDEDAKKLFDQRKDRLGTPEKRQIHQIVFPNAAEAQTARERLAGGMSF 299
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
L +E+G S SD+ LG +K + D ++ D+ G+ + I G G I V I
Sbjct: 300 EDLGKERGLSASDVDLGLVTKSSL-DPAVGDAA-FALPAGEISQPIQGRLGTAIVKVDKI 357
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P ++ + DI ++ +A KV + ++E+ G S+ + +++ + ++ +
Sbjct: 358 EPGVEANYASLVGDIKREIATERARVKVADLRDKMEDERGGGASVIDAAQKLGLTAVTID 417
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
VD +G+ G+ VA IP ++ + F D + D G Y+W + P+RD
Sbjct: 418 AVDRSGRAPNGQPVANIPPGLDVVSQAFNTDVGVDNDA--ISFKGGYVWYDVLAITPSRD 475
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R L+EV V+ W+ + A ++ +KA ++V + GK D +GA + T R
Sbjct: 476 RNLDEVRDQVEARWRQDQIATKLKAKATEMVQKLEAGGK-LADEAAAVGAKVETATGFKR 534
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFIS 592
D+ ++ F + V P+ G +VF+VT+ K
Sbjct: 535 DDSPA-GVPATVVAAAFRTAKDGVGQTPVSGGSEVIVFRVTDIVDPTVDAASDAVKKLKE 593
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + ++ + S + L++ T++ + +
Sbjct: 594 SLDRAQTEEQVASYVNKLETDIGTTINQAAFAQVTGANQ 632
>gi|92117281|ref|YP_577010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
hamburgensis X14]
gi|91800175|gb|ABE62550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
hamburgensis X14]
Length = 635
Score = 327 bits (837), Expect = 4e-87, Method: Composition-based stats.
Identities = 164/638 (25%), Positives = 305/638 (47%), Gaps = 13/638 (2%)
Query: 1 MLEIIRKASRTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML IR AS W+ KI + +L V F IWG++D +F G S + +VG ++ F
Sbjct: 1 MLRGIRNASSNWLGKILMSIVMGLLIVAFGIWGIAD-IFHGFGQSNLATVGSTEISTEQF 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ L ++++ G ++ ++ R++GLD+++L +++ A LD+ GL A +
Sbjct: 60 RQIYNDRLQQLARQFGRSLSPDQVRALGLDRQVLQQVIAEAALDEDARRKGLNASDDEIR 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+I P F G ++ F F + + G E+ Y+ R ++ G G+ PS
Sbjct: 120 RQIMSDPNFKGANDAFDPARFAGLIRQMGYTEQRYVTEQRHTTLRREIAGTVAAGVEPSK 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
LL+ F E R++DY+ L I P+ L +F+ +K +RAPE+++I++++
Sbjct: 180 TLLEMLNHFQNEQRTIDYVKLGVPQAGTIDPPTPEQLASYFDAHKVQFRAPEFRKIAFVV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K +S+++ + YE+ K+K +PE R + Q+VFPN EA A + G F
Sbjct: 240 MTPEGIAKTTAVSDEDAKKAYEQQKDKLSTPEKRQLWQIVFPNVTEAQAARSKIAGGASF 299
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+E+ + SD+ LG SK I D ++A++ K + + I G FG + V I
Sbjct: 300 DDIAKERNLAASDVDLGIISKSEIIDPAVAEAA-FSLKADEVSQPIQGRFGVALVKVGKI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P ++ V + + + + +A +V + + ++E+ G S+ E +++ + ++ +
Sbjct: 359 EPGNQPTYDSVAAKLKHDIAVDRARAEVNDLHNKMEDERGGGASVLEAAKKLGLTAVTID 418
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
VD +G+ GK V IP + L+ + F D + T+ + D ++W + P+RD
Sbjct: 419 AVDRSGRTPDGKPVTGIPPQVDLIAQAFASDVGVDN-ETLQVGDNGFVWFDVLGVTPSRD 477
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R L+EV V+ W+ + + + +KA +V + + GK D LG + + + R
Sbjct: 478 RTLDEVKDKVETGWRDEQISSRLMTKATDMVHKLDQGGK-LADEAAGLGLKVENASALKR 536
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFIS 592
D I+ VF P G +VVF+VT+ KV E K
Sbjct: 537 -DATAAGLPAAVIAAVFRTAKGGAGQAPGAGGEEWVVFRVTDVKVPSLDLASDEMKKLKD 595
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
+ + ++ + + IA L+++ TV+ + +
Sbjct: 596 SIQRSLSDEDIGQYIARLETEIGTTVNQAAVAQITGAN 633
>gi|254503805|ref|ZP_05115956.1| hypothetical protein SADFL11_3844 [Labrenzia alexandrii DFL-11]
gi|222439876|gb|EEE46555.1| hypothetical protein SADFL11_3844 [Labrenzia alexandrii DFL-11]
Length = 635
Score = 326 bits (834), Expect = 7e-87, Method: Composition-based stats.
Identities = 163/628 (25%), Positives = 289/628 (46%), Gaps = 10/628 (1%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+RK + TW+AK+F+ +L F IWG++D L G +TV VG ++V F ++Q+L
Sbjct: 1 MRKGAGTWIAKLFIALLIFSFAIWGVTDFL-QGYGQNTVAKVGEKEVSLLEFDRMYRQDL 59
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ Q+ G + + S+G+ ++ L L+ A + +++ + R+ I P
Sbjct: 60 NRLGQQFGRPLTPQEGASLGIPQQALARLIGQAAMSNAAQELKVGISDDRLGAIIQSDPA 119
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
F G ++ L E EY+ + R V+ +GGM L
Sbjct: 120 FQGASGRYDRSRLQQVLNANDYREDEYVVLRRQEAERGQVIEGLIGGMSAPQAYLAAFDA 179
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
F E RSV+Y+ + + I DP+ L +++ K ++RAPEY+ I Y+ +
Sbjct: 180 FQNETRSVEYVAIAAEQIGDIEDPAEDTLVTYYDGKKADFRAPEYREIRYVELVPSALAR 239
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
+I++ + ++EY++ + PE R V QL F + ++A A Q+L GK F L ++
Sbjct: 240 PEDITDADARSEYDRRISDFAEPERRRVRQLSFNSDEDAQAAAQALAGGKTFADLMADRN 299
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
+ +D++LG S+ D ++ D+ GD + V+ G F VI +V I P+ T F
Sbjct: 300 LTNNDVTLGVMSRADFLDDAIGDAA-FTLSAGDTSDVVEGRFSNVIVNVEEIIPANTTPF 358
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
+V+ +I ++ + +A ++ + +E+ A G +DEI R + D GK
Sbjct: 359 ADVRDEIVEELALEQAEREILDLLDEVEDARAGGALLDEIGERFSLAVKSTGSFDRDGKT 418
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+ A +P E L+ F D + D + + + Y+W + P RDR L+EV
Sbjct: 419 TI-ETDAILPDAEGLIAGAFDSDIGIEND-VLQIGNRGYLWYDVTSVTPERDRDLDEVRD 476
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
V WK+ + E +S KA L+ + + G + D+ G S+ T + R
Sbjct: 477 QVIAAWKSDQLNERLSQKATDLLAKA-ESGTSLGDLAAAEGVSVQTAEGVTRSMPTGD-L 534
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV----GPVQEKDKFISYLTQMMNK 600
G D ++ +F GP V +G VV KVT S++ E L+Q +
Sbjct: 535 GSDALTAIFEGPAGSVATAESADGNGRVVLKVTGSEIPEFSPETSEVTALEGQLSQQVQN 594
Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
LLD +A +++ V ++ + + +
Sbjct: 595 SLLDLFVAEQETRAGVEINSAAVAQVMG 622
>gi|188584391|ref|YP_001927836.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
populi BJ001]
gi|179347889|gb|ACB83301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
populi BJ001]
Length = 634
Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats.
Identities = 156/640 (24%), Positives = 297/640 (46%), Gaps = 17/640 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
ML+ IR AS+ W+ K+ L V+ FLI G++ + F S+TV +VG+ +
Sbjct: 1 MLQSIRSASQHWLGKVVLTVI-FTFLIAGVAIFGVEEFFRGGSSTTVATVGKTPISAEEV 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL V
Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTADLGLAVSDAAVL 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F + F +F L R G+NE ++ +++R + V +
Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAELPVPQ 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + R+ E R + L I P+ L+ +++ K ++RAPEY+ ++ ++
Sbjct: 180 AMREAVHRYSTERRDAAVLTLAPSVAGEIPAPTEEELSAYYDNNKASFRAPEYRSLNLLV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
D K E+S +E + Y+ N ++ PE RT++Q+ FP++ A EA ++ G+
Sbjct: 240 LDPAALAKPDEVSEEEARKVYDANHSRFGKPERRTIQQISFPDEAAAKEARAKIESGETP 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F +A +G + LG+ +K + D ++ D+ ++G + + G FG V+ V+
Sbjct: 300 FETVAAARGLDPKQLDLGTLTKAELFDPAVGDAA-FALEQGKVSEPVKGRFGTVLLRVTA 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKED-YKRLEEFLALGTSMDEISRREKIVSID 414
I+P F EVK +I ++ + + + + +E+ A + EI++ + + +
Sbjct: 359 IEPGTVKPFDEVKDEIRREIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLLS 418
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+P VD G D G+ VA IP KE L F D + + G +W + + P+
Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVG-NDTEVLRTKTGGAIWYDVVKIDPS 477
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++ L EV + K W + + + +K+ +L K G+ + + G L T +I
Sbjct: 478 HEKPLAEVRDEAVKGWTRAEVEKRLVAKSKELTERLEK-GEAIETLAQEAGLPLKTVGEI 536
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
R ++ + + ++F+ PV P G VFKVT + + +
Sbjct: 537 ARNQTKDD-LSTEIVERIFATPVGKAASAPSGEGR--AVFKVTAATMPAFVPGTPSDTQL 593
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
++ L + D+L IA ++ V V+ ++R L GE
Sbjct: 594 VASLRTAIADDVLAEFIAEVQKSAGVNVNQTALRRALGGE 633
>gi|86749913|ref|YP_486409.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris HaA2]
gi|86572941|gb|ABD07498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris HaA2]
Length = 633
Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats.
Identities = 158/636 (24%), Positives = 303/636 (47%), Gaps = 15/636 (2%)
Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML IR AS WV K I + VL + F +WG++D +F G ST+ ++G ++ F
Sbjct: 1 MLRGIRNASSNWVGKTIMMIVMGVLILSFAVWGIAD-IFRGFGRSTLATIGGTEITTEQF 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++ L I ++ G + ++AR+ G+D+++L +++ A LD+ +GL
Sbjct: 60 RQTYNDRLQQIGRQFGRPLTPDQARAFGIDRQVLQQVIAEAALDEDARRLGLGQSDEETM 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F G F + F + + G E+ YI K+ R + G G+ PS+
Sbjct: 120 KSILNDPNFKGVGGAFDPNRFQQVIRQFGFTEQRYIAEQRKVALRRQIAGTITAGLAPSS 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+L A +F E R+++Y+ L + V I PS L ++E +K +RAPEY++++++
Sbjct: 180 TMLQVASQFQNEQRAIEYLKLTDAQVGTIDPPSPEALAAYYEDHKTQFRAPEYRKLAFVT 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K ++S+ + + +++ K+K +PE R V Q+VFP+ +EA A + +G F
Sbjct: 240 VTPDSIAKWTDVSDADARKLFDQRKDKLSTPEKRQVSQIVFPSGEEAQAARTKIAEGASF 299
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A ++G +D+ LG SK + D ++A++ F+L + I G+FG + VS +
Sbjct: 300 DDIATQRGLKPADVELGMVSKAEMLDPAVANAAFALPLNE-VSQPIQGAFGTALVRVSKV 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P S++ + I + + +A +V+E + ++E+ A G ++ E ++ + ++ +
Sbjct: 359 EPGVQPSYESLASTIKRDVSLERARAQVQELHDKMEDARAGGANVIEAAKTLGLNAVTIE 418
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+D +G+ G+ V IP +L F D + + Y+W + P+R+
Sbjct: 419 AIDRSGRGPDGQPVKDIPQGLELATAAFNSDVGVDTES--INYQNGYVWFDVLGVTPSRE 476
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R L+EV V+ W+T + + + A ++V + GK ++ G + T + R
Sbjct: 477 RSLDEVKDQVEARWRTEQVTSRLRTMAAEMVQKLGTAGK-LAEVAPQ-GVKVETATGLKR 534
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592
+ + VF + G + V++VT+ + PV E K
Sbjct: 535 EGA-SAGVPDTVVEAVFRTQKDAFGQSQGGTGNEWFVYRVTDVTIPPVDLASAETKKLKD 593
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
L Q MN + + IA+++ Q ++ + +
Sbjct: 594 ALVQRMNDEQVGEYIAWVEKQIGTKINQQAVAQATG 629
>gi|163760078|ref|ZP_02167161.1| peptidyl-prolyl cis-trans isomerse D [Hoeflea phototrophica DFL-43]
gi|162282477|gb|EDQ32765.1| peptidyl-prolyl cis-trans isomerse D [Hoeflea phototrophica DFL-43]
Length = 651
Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats.
Identities = 181/631 (28%), Positives = 347/631 (54%), Gaps = 8/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RK +++WVA+ LV+L F +WG+S ++ + GS VV+VG +V + F ++
Sbjct: 23 MLDTLRKGAKSWVAQFLLVLLVASFAVWGISGSILNAGGS-AVVTVGDTEVSPNEFRLAY 81
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ + Q++G + E+AR+ G++ ++ L++GA LD+ ++ L R+ IA
Sbjct: 82 DRQMAAVGQQLGTRLTQEQARAFGIENQVYSQLIAGALLDEQAREMNLGLSDSRLAALIA 141
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ FH +++F +F L G++E++YI +++ RT +V G + ++
Sbjct: 142 QDAAFHDFNSRFDRSIFRRVLNSVGMSEEDYIRSRSQVAVRTQIVEAVAEGFDAPDAMIS 201
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
++ E R V+Y++L ++ + PS+ L+ +FE K Y APEY++ +Y+ +
Sbjct: 202 ALAQYEAETRDVNYLLLTKANIDPVPAPSDDELSAFFESNKTRYAAPEYRKFTYVKLESE 261
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ IS++ +A+YE K +Y + E RT++QLVF +++ A+ A L GK F L
Sbjct: 262 DIADPAAISDEMARADYEARKNRYTTAETRTIDQLVFADREAAEAAEAELASGKSFDTLI 321
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+QG++ +D+ LGSF++E +PD SLAD+ F++ G +PV+ G FG VI V+ I P
Sbjct: 322 TDQGRTAADVRLGSFTEETVPDQSLADAAFAITDAGGVSPVVDGQFGPVILRVAEITPES 381
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+ SF+EV+ +I +++ + +A++ + + + E+ A G ++ E + ++K+ + + D
Sbjct: 382 SRSFEEVQTEIRDELALAEAAQVLLDVHDAYEDARAGGMTLMEAATQQKLTPVTIEAADR 441
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+G+ G ++ +P +QLL VF + + ++L ++W ++++ PARDR L+
Sbjct: 442 SGQTPDGTVLSELPQSQQLLRDVFETEPGVEAP-PISLGVEGFVWFEVEDVTPARDRTLD 500
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V DW + + E + +KA L + G + I L ++ T +NR D
Sbjct: 501 EVREQVVADWSSEQELEALGAKATALQERLER-GADLSAIAAELSIAVETKFSLNRTD-T 558
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
+ FG ++ FSGP +V +G + ++ +VT+ + ++Q
Sbjct: 559 DPVFGEAAVAAAFSGPQGLVTVANDTSGDNKILIQVTSVNDASGTTADSVSQEQRDQISQ 618
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+LD V+A L+++Y V+V+ L +R L
Sbjct: 619 QIADDILDQVVAQLQAEYGVSVNRELAERAL 649
>gi|163854063|ref|YP_001642106.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
extorquens PA1]
gi|163665668|gb|ABY33035.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
extorquens PA1]
Length = 634
Score = 324 bits (828), Expect = 4e-86, Method: Composition-based stats.
Identities = 157/640 (24%), Positives = 298/640 (46%), Gaps = 17/640 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
ML+ IR AS+ W+ K+ L V+ FLI G++ + F S+ V +VG+ +
Sbjct: 1 MLQSIRSASQHWLGKVVLSVI-FTFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEV 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL V
Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVL 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F + F +F L R G+NE ++ +++R + V M
Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPVPQ 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + R+ E R + L I P++ LT ++E K ++RAPEY+ ++ ++
Sbjct: 180 AIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALTTYYENNKASFRAPEYRSLNLLV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
D K E+S+DE + Y+ N ++ E RT++Q+ FP++ A EA ++ G+
Sbjct: 240 LDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGETP 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F +A ++G + LG+ +K + D ++ ++ ++G + + G FG V+ V+
Sbjct: 300 FETVAADRGLDPKQLDLGTMTKAELFDPAVGNAA-FALEQGKVSEPVKGRFGTVLLRVTA 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKED-YKRLEEFLALGTSMDEISRREKIVSID 414
I+P F EVK +I ++ + + + + +E+ A + EI++ + + +
Sbjct: 359 IEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLLS 418
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+P VD G D G+ VA IP KE L F D + + G +W + + P+
Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVG-NDTEVLRTKAGGAIWYDVVKIDPS 477
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++ L EV +V K W + + + +K+ +L K G+ + + G L T +I
Sbjct: 478 HEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLKTITEI 536
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
R ++ + + ++F+ PV P G VFKVT + + +
Sbjct: 537 GRNQAKDD-LSTEIVERIFTTPVGKAASAPAGEGR--AVFKVTAATMPAFVPGTPSDGQL 593
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
++ L + D+L IA ++ V V+ ++R GE
Sbjct: 594 VTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633
>gi|254564031|ref|YP_003071126.1| peptidyl-prolyl cis-trans isomerse D [Methylobacterium extorquens
DM4]
gi|254271309|emb|CAX27321.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium
extorquens DM4]
Length = 634
Score = 323 bits (827), Expect = 5e-86, Method: Composition-based stats.
Identities = 157/640 (24%), Positives = 297/640 (46%), Gaps = 17/640 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
ML+ IR AS+ W+ K+ L V+ FLI G++ + F S+ V +VG+ +
Sbjct: 1 MLQSIRSASQHWLGKVVLSVI-FTFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEV 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL V
Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVL 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F + F +F L R G+NE ++ +++R + V M
Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPVPQ 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + R+ E R + L I P++ L ++E K ++RAPEY+ ++ ++
Sbjct: 180 AIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNLLV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
D K E+S+DE + YE N ++ E RT++Q+ FP++ A EA ++ G+
Sbjct: 240 LDPAALAKPDEVSDDEARKVYEANPGRFGKAERRTIQQISFPDEATAAEARAKIESGETP 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F +A ++G + LG+ +K + D ++ ++ ++G + + G FG V+ V+
Sbjct: 300 FETVAADRGLDPKQLDLGTMTKAELFDPAVGNAA-FALEQGKVSEPVKGRFGTVLLRVTA 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKED-YKRLEEFLALGTSMDEISRREKIVSID 414
I+P F EVK +I ++ + + + + +E+ A + EI++ + + +
Sbjct: 359 IEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLVS 418
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+P VD G D G+ VA IP KE L F D + + G +W + + P+
Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVG-NDTEVLRTKAGGAIWYDVVKIDPS 477
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++ L EV +V K W + + + +K+ +L K G+ + + G L T +I
Sbjct: 478 HEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLKTITEI 536
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
R ++ + + ++F+ PV P G VFKVT + + +
Sbjct: 537 GRNQAKDD-LSTEIVERIFTTPVGKAASAPAGEGR--AVFKVTAATMPAFVPGTPSDGQL 593
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
++ L + D+L IA ++ V V+ ++R GE
Sbjct: 594 VTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633
>gi|218533006|ref|YP_002423822.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
chloromethanicum CM4]
gi|218525309|gb|ACK85894.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
chloromethanicum CM4]
Length = 634
Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats.
Identities = 156/640 (24%), Positives = 297/640 (46%), Gaps = 17/640 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
ML+ IR AS+ W+ K+ L V+ FLI G++ + F S+ V +VG+ +
Sbjct: 1 MLQSIRSASQHWLGKVVLSVI-FTFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEV 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL V
Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVL 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F + F +F L R G+NE ++ +++R + V M
Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMPVPQ 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + R+ E R + L I P++ L ++E K ++RAPEY+ ++ ++
Sbjct: 180 AIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNLLV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
D K E+S+DE + Y+ N ++ E RT++Q+ FP++ A EA ++ G+
Sbjct: 240 LDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGETP 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F +A ++G + LG+ +K + D ++ ++ ++G + + G FG V+ V+
Sbjct: 300 FETVAADRGLDPKQLDLGTMTKAELFDPAVGNAA-FALEQGKVSEPVKGRFGTVLLRVTA 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKED-YKRLEEFLALGTSMDEISRREKIVSID 414
I+P F EVK +I ++ + + + + +E+ A + EI++ + + +
Sbjct: 359 IEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLVS 418
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+P VD G D G+ VA IP KE L F D + + G +W + + P+
Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKETTLPAAFRADVG-NDTEVLRTKAGGAIWYDVVKIDPS 477
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++ L EV +V K W + + + +K+ +L K G+ + + G L T +I
Sbjct: 478 HEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQETGVPLKTITEI 536
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
R ++ + + ++F+ PV P G VFKVT + + +
Sbjct: 537 GRNQAKDD-LSTEIVERIFTTPVGKAASAPAGEGR--AVFKVTAATMPAFVPGTPSDGQL 593
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
++ L + D+L IA ++ V V+ ++R GE
Sbjct: 594 VTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633
>gi|240141517|ref|YP_002965997.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium
extorquens AM1]
gi|240011494|gb|ACS42720.1| putative peptidyl-prolyl cis-trans isomerse D [Methylobacterium
extorquens AM1]
Length = 634
Score = 322 bits (825), Expect = 9e-86, Method: Composition-based stats.
Identities = 156/640 (24%), Positives = 297/640 (46%), Gaps = 17/640 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
ML+ IR AS+ W+ K+ L V+ FLI G++ + F S+ V +VG+ +
Sbjct: 1 MLQSIRSASQHWLGKVVLSVI-FTFLIAGVAIFGVEEFFRGGSSTAVATVGKTPISAEEV 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ +L ++ + ++AR++GL++++L L++ A LDQ D+GL V
Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARAMGLERQVLAQLITEAALDQKTTDLGLAVSDATVL 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F + F +F L R G+NE ++ +++R + V M
Sbjct: 120 RAIQDEPSFKNANGSFDRALFFQTLQRAGLNEAMFVREQRSVIARLQLADAIVAEMLVPQ 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + R+ E R + L I P++ L ++E K ++RAPEY+ ++ ++
Sbjct: 180 AIREAVHRYSTERRDAAVLTLAPSAAGEIPAPTDEALNAYYENNKASFRAPEYRSLNLLV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
D K E+S+DE + Y+ N ++ E RT++Q+ FP++ A EA ++ G+
Sbjct: 240 LDPAALAKPDEVSDDEARKVYDANPGRFGKAERRTIQQISFPDEAAAAEARAKIESGESP 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F +A ++G + LG+ +K + D ++ ++ ++G + + G FG V+ V+
Sbjct: 300 FETVAADRGLDPKQLDLGTMTKAELFDPAVGNAA-FALEQGKVSEPVKGRFGTVLLRVTA 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKED-YKRLEEFLALGTSMDEISRREKIVSID 414
I+P F EVK +I ++ + + + + +E+ A + EI++ + + +
Sbjct: 359 IEPGTVKPFDEVKDEIRKEIALKRVRDGGFDKVQDAIEDARASAKPLAEIAKDQGLTLLS 418
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+P VD G D G+ VA IP KE L F D + + G +W + + P+
Sbjct: 419 IPAVDAQGNDPSGQPVAGIPDKESTLPAAFRADVG-NDTEVLRTKAGGAIWYDVVKIDPS 477
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++ L EV +V K W + + + +K+ +L K G+ + + G L T +I
Sbjct: 478 HEKPLAEVRDEVVKGWTAAEIEKRLVAKSKELTERLDK-GEAIETVAQEAGVPLKTITEI 536
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
R ++ + + ++F+ PV P G VFKVT + + +
Sbjct: 537 GRNQAKDD-LSTEIVERIFTTPVGKAASAPAGEGR--AVFKVTAATMPAFVPGTPSDGQL 593
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
++ L + D+L IA ++ V V+ ++R GE
Sbjct: 594 VTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRAFGGE 633
>gi|146341037|ref|YP_001206085.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
gi|146193843|emb|CAL77860.1| Putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
Length = 636
Score = 320 bits (818), Expect = 6e-85, Method: Composition-based stats.
Identities = 169/638 (26%), Positives = 303/638 (47%), Gaps = 15/638 (2%)
Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML +RKAS W+ K + + VL V F IWG++D +F G ST +VGR ++ + F
Sbjct: 1 MLRGLRKASSNWLGKTIMAVVMGVLIVSFGIWGIAD-IFRGFGQSTAATVGRTEISINEF 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ L I ++IG + +++AR GLD+ +L ++ A LD+ IGL
Sbjct: 60 RQIYTDRLQQIGRQIGRPLTTDQARMFGLDRSVLQQTIAEAALDEQARRIGLGQSDAETM 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F G + F F + + G E+ Y+ + R + G G+ PSN
Sbjct: 120 RVILSDPNFKGPNGAFDPQRFQAIIRNFGFTEQRYLADQRRQSLRRQITGTIAAGLEPSN 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
LLD RF E RS+DY+ L+ I P+ VL +F+++K ++APEY++IS++L
Sbjct: 180 TLLDALSRFQNEQRSIDYVKLDAAQAGTIETPAPEVLATYFDEHKAQFKAPEYRKISFVL 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
E K +S+++ + +++ K +PE R V+Q+ FP +EA A + G+
Sbjct: 240 VTPEEIGKWTTVSDEDARKVFDQRKALMGTPEKRQVQQMTFPTMEEAQAARARIASGEVT 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F +LA+E+ + +D+ LG +K I D ++AD G+ + + G+F + VS
Sbjct: 300 FDELAKERNLNPADLDLGLVTKSAILDPAVAD-TAFSLPTGEVSQPVKGAFNVALVKVSA 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
I+P +++ V DI ++ +A +V ++E+ G S+ E +++ + ++ +
Sbjct: 359 IQPGQEPAYESVAADIKKEIAAERAKSEVATLRDKMEDERGGGASVAEAAKKLGLNAVTV 418
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
VD +GK G+ V IP ++ + F D + G Y+W ++ P R
Sbjct: 419 EAVDRSGKQPDGQPVPNIPLGLDVVAQAFASDVGVDN--EPISFRGGYVWFEVLGITPPR 476
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
+R L+EV V W+ + A+ + +A +LV + ++ GK D LG + T +
Sbjct: 477 ERTLDEVKDQVAAKWRDDEIAKRLRDRATELVKKLNEGGK-LADEAAALGVKVETASAFK 535
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFI 591
R D I+ F + V + G ++VF+VT+ ++ K
Sbjct: 536 R-DASLPGVPTGAITATFRTAKDGVGQTEADGGRQWIVFRVTDIVDPKVDLASEDVKKLK 594
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
L + + + S + L+ T+++ + + + G
Sbjct: 595 DQLQRALADEQGTSYVLKLEKDIGTTINEAAVAQVVGG 632
>gi|170749508|ref|YP_001755768.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
radiotolerans JCM 2831]
gi|170656030|gb|ACB25085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
radiotolerans JCM 2831]
Length = 633
Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats.
Identities = 155/639 (24%), Positives = 294/639 (46%), Gaps = 16/639 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
ML+ IR AS+ W+ KI L + LI G+ + F S+ V +VG +
Sbjct: 1 MLQGIRNASQHWLGKIVLT-IIFTLLIAGVGIFGVEEFFRGGASNKVATVGSTPITAEQV 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ +L ++ + ++AR +GLD++++ L++ A LDQ D+GL V
Sbjct: 60 RQAYQNQLQRYQTQLKRPLTPDQARMLGLDRQVMSQLITEAALDQKTHDLGLAVPDASVI 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I F + +F +F L R G+NE ++ +++R + +
Sbjct: 120 KAIHEEKSFQNQQGQFEPQLFYQTLQRAGLNEGLFVREQRSVIARLQLAEAVSSDLHVPL 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + R+ E R+ Y++L I DP++ L W+E K +RAPE++ ++ ++
Sbjct: 180 AMREAVHRYTTERRAAAYLMLTPSVAGQIPDPTDDELKTWYEANKSGFRAPEFRSVNLLV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KK 295
+ K I+ + +A Y NK++Y +PE RT++Q+VFP+ A+ A +++ G K
Sbjct: 240 VEPEAMAKPDAITEADARAAYALNKDRYGTPEKRTIQQIVFPDAAAAEAARKAITDGSKT 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F +A E+G D++LG+ +K + D ++AD+ F+L + G + + G FG V+ V+
Sbjct: 300 FDAVAAERGTDEKDLTLGTLTKSELFDKAVADAAFALPEGG-VSQPVQGRFGTVLLRVTK 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
I+ F+ V+ +I + + +A + ++ +E+ A + +I+ + + +
Sbjct: 359 IEAGTVKPFEAVEGEIRKALALARARDAMETTRDAIEDQRAGAKPLADIAAERGLKIVTV 418
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
VD GK G+ V IP E L +F + + G Y+W + A
Sbjct: 419 KAVDANGKGPDGQRVTDIPDAETTLPALFRAEIGGDN-EPLRTKTGGYVWYDVTGIDAAH 477
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
D+ L++V VK W + A+ + +K +LV + +K G+ + +G +L +
Sbjct: 478 DKPLDQVKDGVKAGWTATEIAKRLQAKGRELVEKINK-GETMEAAAQEVGVNLQEAQDLA 536
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFI 591
R ++ D ++ +F+ PV G S VFKVT + V +
Sbjct: 537 RNQAKD-MLTADVVNLIFATPVGKAGTAAA--GDSRAVFKVTAATVPAFVADSPSDKQIT 593
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
+ D+L I+ ++ V V ++R + GE
Sbjct: 594 QSFQASLADDVLSQYISEVQKNAGVKVDPAALRRAIGGE 632
>gi|148255838|ref|YP_001240423.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
gi|146408011|gb|ABQ36517.1| Putative Peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
Length = 636
Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats.
Identities = 169/638 (26%), Positives = 304/638 (47%), Gaps = 15/638 (2%)
Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML +RKAS W+ K + + VL V F IWG++D +F G ST +VGR ++ + F
Sbjct: 1 MLRGLRKASSNWLGKTIMAVVMGVLIVSFGIWGIAD-IFRGFGQSTAATVGRTEISINEF 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ L I +++G + E+AR GLD+ +L ++ A LD+ +GL
Sbjct: 60 RQIYTDRLQQIGRQLGRPLTQEQARMFGLDRTVLQQTIAEAALDEDARRLGLGQSDAETM 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F G + F F + + G E+ Y+ ++ R + G G+ P N
Sbjct: 120 RVILSDPNFKGPNGAFDPQRFQAIIRNFGFTEQRYLADQRRVSLRRQITGTIAAGLEPPN 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+LD RF E RS+DY+ L+ I PS VL +F+++K ++APEY++IS++L
Sbjct: 180 TMLDALSRFQNEQRSIDYLKLDAAQAGPIDAPSPEVLASYFDEHKAQFKAPEYRKISFVL 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-K 295
+ K ++S+++ + +++ K + +PE R V+Q+ FP +EA A + G+
Sbjct: 240 VTPEDIGKWTDVSDEDARKLFDQRKAQMGTPEKRQVQQMTFPTMEEAQAARARIASGEVS 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F +LA+E+ + +D+ LG +K I D ++AD + G+ + + G+F + VS
Sbjct: 300 FDELAKERNLNPADLDLGLVTKTAILDPAVAD-MAFSLPTGEVSQPVKGAFNVALVKVSA 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
I+P +++ V DI ++ +A +V ++E+ G S+ E +++ + +I +
Sbjct: 359 IQPGQQPAYESVATDIKKEIAADRAKSQVANLRDKMEDERGGGASVAEAAKKLGLNAITV 418
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
VD +GK G+ V IP ++ + F D + G Y+W ++ P R
Sbjct: 419 EAVDRSGKQPDGQPVPNIPLGLDVVAQAFNSDVGVDN--EPISFRGGYVWYEVLGITPPR 476
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
DR L+EV V W+ + A ++ +KA LV + ++ GK D LG + T +
Sbjct: 477 DRSLDEVKDQVAAKWRDDEVAAKLRAKATDLVKKLNEGGK-LADEAAMLGVKVETASAFK 535
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFI 591
R D I F + V E G ++VF+VT+ ++ K
Sbjct: 536 R-DATVPGVPAGAIVAAFRTAKDGVGQTEAEGGRQWIVFRVTDITEPKVDLASEDIKKLK 594
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
L + + + + + L+ T+++ + + + G
Sbjct: 595 DQLQRALADEQGTAYVMKLEKDIGTTINEAAVAQVVGG 632
>gi|75676027|ref|YP_318448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
winogradskyi Nb-255]
gi|74420897|gb|ABA05096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
winogradskyi Nb-255]
Length = 636
Score = 318 bits (813), Expect = 2e-84, Method: Composition-based stats.
Identities = 157/638 (24%), Positives = 302/638 (47%), Gaps = 13/638 (2%)
Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML IR AS W+ K I + +L V F IWG++D +F G S + +VG ++ F
Sbjct: 1 MLRGIRNASSNWLGKTLMTIVMGLLIVAFGIWGIAD-IFHGFGQSALATVGGTEISTEQF 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ L I ++ G + ++ R++GLD++IL +++ A LD+ + GL+ +
Sbjct: 60 RQIYNDRLQQIGRQFGRPLPPDQVRALGLDRQILQQVIAEAALDEDAQRKGLKVSDEEIG 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+I P F G +N F F + + G E+ Y+ M R +VG G+ PS
Sbjct: 120 RQIKSDPNFKGANNAFDAARFAGLIRQLGYTEQRYVAEQRNMALRRQIVGTMTAGVEPSK 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
LL+ RF E R++DY+ L I P+ L+ +F+ +K +RAPEY+++++++
Sbjct: 180 TLLEALNRFQNEQRTIDYVKLGAAQAGTIDPPTADQLSGYFDAHKVQFRAPEYRKVAFVV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
E K +S+D+ + YE+ K+K +PE R + Q++FP+ +A A + + G F
Sbjct: 240 LTPEEVAKWTAVSDDDARKIYEERKDKLSTPERRQLRQIMFPSVTDAQAAREKIAGGASF 299
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A E+G + SDI LG+ SK I D ++A++ + + G FG + V I
Sbjct: 300 DDIARERGLATSDIDLGTISKAEIIDPAIANAA-FSINSDEVSQPTQGRFGVALIKVGRI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P +++ V + + + + +A ++ + ++E+ G S+ E +++ + ++ +
Sbjct: 359 EPGNQPTYESVAEKLKRDVALDRARAEINNLHNKMEDERGGGASVVEAAKKVGLSAVTIE 418
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D +G+ GK V+ IP L+ + F D + D T+ L + ++W + P+RD
Sbjct: 419 ATDRSGRAPDGKPVSGIPQGVDLIAQAFASDVGVDND-TLQLGNNGFIWFDVIGVTPSRD 477
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R L+EV V+ W+ + + + +KA + + + GK D +LG + + + I R
Sbjct: 478 RTLDEVKDKVEARWREDQISSRLMTKATDTIRKLEQGGK-LADEAASLGLKVESASAIKR 536
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFIS 592
+ + P + +F+VT+ KV E K
Sbjct: 537 DATTTALPAAVVAAVC-RAAKDAAGQAPGAGNDEWFIFRVTDVKVPTLDLASDETKKLRE 595
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
+ + ++ + + I L+++ ++ + +
Sbjct: 596 GVQRGLSDEYIGQYIVKLEAEIGTKINQAAVAQITGAS 633
>gi|86357790|ref|YP_469682.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Rhizobium etli CFN 42]
gi|86281892|gb|ABC90955.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Rhizobium etli CFN 42]
Length = 646
Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats.
Identities = 210/630 (33%), Positives = 359/630 (56%), Gaps = 7/630 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M ++R+A++TWVAK+ L++L F IWG+S L S S+TVV+VG QKV + F ++
Sbjct: 17 MFHLLRRAAQTWVAKLLLLLLVASFGIWGISRELISGGSSTTVVTVGDQKVGVTEFQLAY 76
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ I Q+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ I
Sbjct: 77 QRQVTSIGQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 136
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + +F ++FVSRL GI + +YI +K+ R+ +V G L+D
Sbjct: 137 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLID 196
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K + E+RS+DY++L N ++ I P++ VL WFE K YRAPEY+++ Y+
Sbjct: 197 ALKLYGDESRSIDYLLLTNANIEPIKAPADDVLASWFEGVKQRYRAPEYRKLIYLKLQPA 256
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +++D+++ +EK K+ Y +PE RT+EQL F ++ A A +LK G F QL
Sbjct: 257 DIADAATVTDDQIREAFEKGKDSYRTPESRTIEQLTFASKDLATAAETALKGGTSFDQLL 316
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G TPV+ GSFG VI ++NIKP
Sbjct: 317 TDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKPET 376
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+F EVK+DI Q+ ++ AS++V + R+E+ A G+++++I+ + K+ ++ + VD
Sbjct: 377 VKNFDEVKEDIRKQLALSNASQEVINVHDRIEDMRAGGSTLEDIAGQLKLKAVTVDAVDA 436
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GKEV +P K+QLL F + + + + + Y+W ++E P RDR +
Sbjct: 437 TGVDKDGKEVKDLPAKQQLLGEAFKTEVGVD-ASPLPIGNDGYVWFNVREITPDRDRPIA 495
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV +DW + E++ KA +L + K G DI LG ++ + + I R +
Sbjct: 496 EVREKAVEDWTAEQQKAELAKKAEELKAQAQK-GAALADIAAPLGIAVESKSGITR-STD 553
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQ 596
+ G + FSGPV+ V + + ++ KVT P + +D ++ +
Sbjct: 554 DPVLGRAAVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTSDVLNNRDAQLTAMAN 613
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
D+LD ++ L++QY +++ L ++
Sbjct: 614 AAGDDILDQMVNLLQTQYGASINQTLAEQA 643
>gi|118589929|ref|ZP_01547333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stappia aggregata
IAM 12614]
gi|118437426|gb|EAV44063.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stappia aggregata
IAM 12614]
Length = 630
Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats.
Identities = 171/635 (26%), Positives = 307/635 (48%), Gaps = 10/635 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RK + TWVAK+F+ +L + F +WG+S L + G +T VG +V F ++
Sbjct: 1 MLDALRKGAGTWVAKLFIALLIMSFAVWGISGFL-TGVGQNTAAKVGDTEVSLFDFDRAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+LG ++Q+ G + ++G+ ++ L LV+ A ++ +++ L R+ I
Sbjct: 60 RQDLGRLAQQFGRQLTPAEGAALGVPQQTLGKLVAEAAMNNTAQNMKLGVSDERLATIIQ 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F G ++ + L G E EY+ K+ R + G M+ L+
Sbjct: 120 SDPAFQGPGGRYDKNRLQQVLRASGYREDEYVVERRKVAERAQLAEGIAGSMKAPMTYLE 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E RS DY+++ + I DP+ VLT +FE+ K+++RAPE++ I Y+
Sbjct: 180 VLDTYQGETRSADYLMVTPEFIGEIEDPAEDVLTTYFEEKKEDFRAPEFREIKYVTLTPA 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +IS+D+ +AEYE+ E +F PE R + Q+ FP+Q+ A+EA Q L GK F +L
Sbjct: 240 SLARPDDISDDDARAEYERRSEDFFQPERRKIRQMSFPSQQAAEEAAQELANGKTFDELM 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
E+ + +D++LG +K D ++ D+ ++G + + G F VI +V I P
Sbjct: 300 GERNLTDNDVTLGVMAKADFLDEAIGDAA-FSQEEGATSGAVEGRFSTVIVNVEEILPES 358
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T F++VK +I + +A ++ + +E+ A G +DE+ R + D
Sbjct: 359 TKPFEDVKDEIVQSLAKEQAEREILDLLDEVEDARAGGALLDEVGERFSLTVETPAAFDA 418
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+G GK A + L D ++ + + ++W + + IP+R+R L+
Sbjct: 419 SGNGEDGKPAALPEA--EGLVAGTFDSDIGIENDVLQFGEQGFLWYDVVKVIPSRERTLD 476
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV DV WK + A+ +S A L+ + ++ G F + G + + ++ R
Sbjct: 477 EVRADVIAAWKKDELAKRLSDTAADLLAK-TEGGTPFIALSAETGLEVKSATELKRNTP- 534
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
FG D +S VFSGP+ +G VV KVT S V + L+Q
Sbjct: 535 AGDFGRDAVSAVFSGPIGTTAIAEANDGEGRVVLKVTGSNVPEFQKDAPQVAALGQQLSQ 594
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ LL I+ +++ V +++ I + + ++
Sbjct: 595 QIQDTLLGQFISDRETKAGVEINNAGIAQMIGLDQ 629
>gi|91977297|ref|YP_569956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB5]
gi|91683753|gb|ABE40055.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB5]
Length = 633
Score = 316 bits (807), Expect = 9e-84, Method: Composition-based stats.
Identities = 159/636 (25%), Positives = 292/636 (45%), Gaps = 15/636 (2%)
Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML IR AS W K I + VL + F +WG++D +F G ST+ +G ++ F
Sbjct: 1 MLRGIRNASSNWFGKTVMIIVMGVLIISFAVWGIAD-IFRGFGRSTLAQIGGTEISTEQF 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++ L I ++ G + ++AR+ G+D+++L +++ A LD+ + L
Sbjct: 60 RQTYNDRLQQIGRQFGRPLTPDQARAFGIDRQVLQQVIAEAALDEDARRLQLGQSDDETM 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F G + F F + + G E+ YI K+ R + G G+ PSN
Sbjct: 120 RSILNDPSFKGTNGAFDPGRFQQVIRQFGFTEQRYIAEQRKVALRRQIAGTITAGLAPSN 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+L A +F E R++DY+ L + V I PS L ++E +K +RAPEY++++++
Sbjct: 180 TMLLVASQFQNEQRAIDYLKLTDAQVGTIEPPSAEALAAFYEDHKAQFRAPEYRKVAFVA 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K ++S+ + + +++ K+K +PE R V Q+VFPN +EA A + +G F
Sbjct: 240 LTPESIAKWTDVSDADARKLFDERKDKLSTPEKRQVLQIVFPNAEEAQAARARITEGASF 299
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+ ++G +D+ LG K + D ++ + + + I G+FG + V+ I
Sbjct: 300 EDITNQRGLKPADVELGLVGKAEMLDPAV-AKVAFALPLNEVSQPIPGAFGTALVKVAKI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P S++ V I + + +A +V + ++E+ A G ++ E S+ + ++ +
Sbjct: 359 EPGVQPSYESVAPTIKRDVALERARAQVMAQHDKMEDARAGGANVIEASKMLGLNAVTIE 418
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
VD +G+ G+ V IP +L F D + + Y+W + P+R+
Sbjct: 419 AVDRSGRGPDGQPVKEIPQGLELATSAFNSDVGVDTEQ--INYQNGYVWFDVLGVTPSRE 476
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R L EV V+ W+T + + + A +LV + GK ++ G + T + + R
Sbjct: 477 RSLAEVKDQVEARWRTEQVTSRLRTMAAELVQKLGANGK-LAEVAPQ-GVKVETASGLKR 534
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFIS 592
+ VF + V P NG + V++VT+ V P + K
Sbjct: 535 EGAT-PGVPATVVEAVFRTAKDGVGQSPGGNGNEWFVYRVTDVTVPPVDLASDDAKKLKD 593
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
L Q MN + + IA+L+ ++ + +
Sbjct: 594 ALLQRMNDEQVGEYIAWLERDIGTKINQQAVAQATG 629
>gi|222086022|ref|YP_002544554.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Agrobacterium radiobacter K84]
gi|221723470|gb|ACM26626.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Agrobacterium radiobacter K84]
Length = 630
Score = 315 bits (806), Expect = 1e-83, Method: Composition-based stats.
Identities = 201/631 (31%), Positives = 347/631 (54%), Gaps = 7/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M +++RK ++TWVAK V+L F IWG+ + + S+ VV+VG QK+ + F ++
Sbjct: 1 MFDVLRKLAKTWVAKGIFVLLIAAFSIWGIESRMVTGGSSNAVVTVGDQKIDTNEFRLAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ ISQ++ + E+AR+ G+ ++ + LV+GA+LDQ D+ L R+ I
Sbjct: 61 RRQIQAISQQLRMQITPEQARAFGIAQQTVAQLVAGASLDQLASDMNLGLSQDRLAQLIG 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + F F S L IN +YI +K+ R+ +V G L+D
Sbjct: 121 DDPAFKALNGTFDRQKFESLLRNSNINPDDYIKERSKVAVRSQIVEAVSNGFVAPKTLVD 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K+++ E+RS+DY++L N ++ I P++ VL++WF+ K +RAPEY++ SY+
Sbjct: 181 AVKQYHDESRSIDYLLLTNANIDPIKAPADDVLSKWFDGVKSKFRAPEYRKFSYVKLQAE 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +++D +AE+EK K + +P RT+EQL F N+ A+ A +LK G F QL
Sbjct: 241 DIADPASVTDDAARAEFEKRKNSFTTPATRTIEQLTFANKDLANAASDALKTGTTFDQLV 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+QGK +D+ LG+F+KE +PD +LA + F++AK+G TPV+ GSFG VI V+N+K
Sbjct: 301 TDQGKKPADVLLGTFTKEQVPDQTLAQAAFAVAKEGGTTPVVDGSFGPVILRVTNVKDET 360
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+F +VK+DI Q+ + A+ + + + E+ G S+ E +++ + +I + +D
Sbjct: 361 AKNFDDVKEDIRKQIALNAAASDITSIHDKFEDLRGSGVSLQEAAQQLNLKAITVDAIDS 420
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D G E+ +P ++QLL VF D S + + + Y+W + P RDR L
Sbjct: 421 TGLDQAGNEIKDLPARQQLLGEVFKADQG-SNAAPLTVGNDGYVWYDVLGLTPDRDRPLA 479
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV DW + +++KAN+L E K GK+ DI LG ++ + + R +
Sbjct: 480 EVREKAVVDWTAEQQKIALAAKANELKQEAQK-GKSLADIATPLGIAVESKADVTRTT-D 537
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQ 596
+ G G++ FSGP++ + + ++ KVT+ P + +D+ + +
Sbjct: 538 DPVLGRAGVAAAFSGPIDTAANAIGADDTTQILLKVTDVNNNPTTDALSNQDQQATQIAN 597
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
D+LD ++A L+S+Y+VTV+ NL ++ +
Sbjct: 598 AAGDDILDQIVADLQSKYTVTVNQNLAEQAM 628
>gi|209549414|ref|YP_002281331.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209535170|gb|ACI55105.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
[Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 630
Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats.
Identities = 204/630 (32%), Positives = 359/630 (56%), Gaps = 7/630 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I+R+A++TWVAK+ +++L F IWG+S +L + S S+TVV+VG Q V + F ++
Sbjct: 1 MFHILRRAAQTWVAKLLMLLLVASFGIWGVSRSLITGSNSTTVVTVGDQHVDVNEFHLAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ + Q+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ IA
Sbjct: 61 QRQVASLGQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + KF ++F+SRL I + +YI +K+ R+ VV G L+D
Sbjct: 121 DDPAFKAVNGKFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLID 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K + E+RS+DY++L N ++ I P++ VL WF+ K Y+APEY+++ Y+
Sbjct: 181 ALKLYGNESRSIDYLLLTNANIEPIKAPADDVLAAWFDGVKQRYQAPEYRKLVYLSLQPA 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +++D++ ++K+K+ Y +PE RT+EQL F ++ A A +LK G F QL
Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFTSKDLAVAAETALKGGTSFDQLV 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G TPV+ GSFG VI ++NIKP
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVEGSFGSVILRITNIKPET 360
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T +F EVK+DI Q+ ++ AS++V + R+E+ A G ++++I+ + K+ ++ + VD
Sbjct: 361 TKNFDEVKEDIRKQLALSNASQEVINVHDRIEDLRAGGATLEDIAGQLKLKAVTVDAVDM 420
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GKEV IP K+QLL F + + + + + Y+W ++E P R+R +
Sbjct: 421 TGADKDGKEVKDIPVKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPTRERPVA 479
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV +DW + + +K + + + +G DI LG ++ + + + R +
Sbjct: 480 EVREKAVEDWTAEQ-QKAELAKKAEALKAEAAKGTALADIATPLGIAVESKSGVTR-ATD 537
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQ 596
+ G G++ FSGPV+ V + + ++ KVT P + +D I+ +
Sbjct: 538 DPVLGRAGVTAAFSGPVDAVASAVGADPSTQILMKVTEVNSEPTSDALNNRDAQITAMAN 597
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
D+LD ++ L++QY ++ L ++
Sbjct: 598 AAGDDILDQMVNLLQTQYGAQINQTLAEQA 627
>gi|154248299|ref|YP_001419257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter
autotrophicus Py2]
gi|154162384|gb|ABS69600.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter
autotrophicus Py2]
Length = 630
Score = 314 bits (802), Expect = 3e-83, Method: Composition-based stats.
Identities = 160/629 (25%), Positives = 303/629 (48%), Gaps = 8/629 (1%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ +RK + W+AKIFLV+L + FL+WG++D +F G+++V SVG ++ +F +
Sbjct: 3 LQTLRKGASGWIAKIFLVILTLSFLVWGIAD-VFRGMGATSVASVGATEISADAFRRQYL 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+L IS++ G ++ ++AR+ GLD++IL+ +++ ATLD+ + L ++ EIA
Sbjct: 62 DQLQQISRRAGRPISPDQARAFGLDRQILNQMIADATLDEQASRLALAVSDEQIAREIAD 121
Query: 122 SPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P + F F L + E+ ++ + R ++ G+ +L+D
Sbjct: 122 NPNYRRPGATSFDPAYFQQLLRSNNLTEQRFVASERQRAVRDQLLKSLGAGVAVPQVLID 181
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
RF E R+ Y+ + +A P++ VL +F+ +K +RAPEY++IS +
Sbjct: 182 AVGRFENETRTASYVRVTPAAAGPLAAPTDEVLRAYFDAHKVTFRAPEYRKISVLALTPA 241
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
++ + +A+YE+N ++ +PE R V+Q+VF + +A A + +K G F +A
Sbjct: 242 TLAAAETVTEADAKADYERNLSRFGTPERREVQQIVFTSAADALAADEKIKAGASFADIA 301
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+G + D LG +K I D +AD+ FS+ + G + + G FG V+ HV+ ++P
Sbjct: 302 AARGLTAKDTDLGLVAKSAILDPKIADAAFSMPE-GAVSA-VEGRFGTVLVHVTKVEPGA 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
F+ VK I+ +R+ +A + + + ++E+ A G+++ E++++ + VD
Sbjct: 360 RQPFEAVKDQISADLRLDRARRALLDKHDQVEDERASGSTLAEVAQKLGLRLQTFDAVDR 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+G G A +P +L F + D +G ++W + PARDR +
Sbjct: 420 SGHTPSGDP-ADVPGGADVLSGAFAAQPGVETDTVQLPQNGGFVWYETNAITPARDRTFD 478
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
E + V W +T + V +KA L+ + K G + L + R
Sbjct: 479 EAKSAVTARWTESETEKAVEAKATALLDKA-KAGTPLAQVAAEADLPLQIAEGLRR-GRA 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMN 599
F + I+ VF VVF+VT V P + + + L++ +
Sbjct: 537 AGPFSAESIASVFDVKEGGFGIALAATEPDRVVFEVTKIMVPPPDMDTSRASAELSRQIE 596
Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
D+L ++ ++ + V ++D L +
Sbjct: 597 NDVLLQYLSAIQKEIGVKINDKLFAQATG 625
>gi|316933952|ref|YP_004108934.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris DX-1]
gi|315601666|gb|ADU44201.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris DX-1]
Length = 633
Score = 313 bits (800), Expect = 7e-83, Method: Composition-based stats.
Identities = 155/629 (24%), Positives = 291/629 (46%), Gaps = 15/629 (2%)
Query: 1 MLEIIRKASRTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML IR AS W K + +L V F IWG++D +F G +T+ +G ++ F
Sbjct: 1 MLRGIRNASSNWFGKTIMIAVMGLLIVSFGIWGIAD-VFRGFGRATLAKIGGTEISTEQF 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++ L I +++G + ++AR++G+D+++L ++ A LD+ +GL
Sbjct: 60 RQTYNDRLQQIGRQLGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTM 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F G + +F F + + G E+ Y+ ++ R + G G+ P
Sbjct: 120 KSILEDPNFKGANGQFDAGRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGTITAGLEPPK 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
LL +F E R++DY+ L + I PS A L +++ +K +RAPEY++IS+++
Sbjct: 180 TLLQALSQFQNEERAIDYLKLTDAQAGTIEAPSPADLAAFYDSHKAQFRAPEYRKISFLV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K E+S+ + + +++ K++ +PE R + Q+VFPN +EA A + G F
Sbjct: 240 VTPESIGKWTEVSDADARKLFDQRKDRLSTPEKRQILQIVFPNAEEAQAARAKIASGTSF 299
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA+E+G +D+ LG S+ + D +A + F+L + + G FG V+ V+ I
Sbjct: 300 ADLAQERGVKSADLDLGLVSQSEMLDPKVAAAAFALPLNE-VSQPVQGQFGTVLLEVTKI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P + V ++ ++ +A ++V+E + ++E+ G+S+ E + + + ++ +
Sbjct: 359 EPGKQPDYASVAANLKRELAQERARKQVQELHDKIEDARGGGSSVSEAASQLGLAAVTVE 418
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+D +G+ G V IP +L F + + D Y+W I P+R+
Sbjct: 419 AIDRSGRGPDGAPVTTIPQGLELATAAFNSEPGVDNDA--ISYQNGYVWYDIVGVTPSRE 476
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R L+EV V+ W+ + E + A +LV + GK D+ G ++ + I R
Sbjct: 477 RALDEVKDKVEAGWRAEQITERLRKLAVELVQKLDGGGK-LADVAPA-GVAVQSATGIKR 534
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592
+ + VF + +G + VF+VT V + +
Sbjct: 535 EGADA-GLPGTVVDAVFRTAKDAAGQVQGSSGTEWYVFRVTGDTVTTADVNAPQMQQLKD 593
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
L Q + + + IA+L+ V+
Sbjct: 594 NLVQRLRDEEVGQYIAWLEKDIGTKVNQE 622
>gi|190891851|ref|YP_001978393.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
[Rhizobium etli CIAT 652]
gi|190697130|gb|ACE91215.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
[Rhizobium etli CIAT 652]
Length = 630
Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats.
Identities = 212/629 (33%), Positives = 357/629 (56%), Gaps = 7/629 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M +R+A++TWVAK+ L++L F IWG+S L S S+TVV+VG Q V + F ++
Sbjct: 1 MFHFLRRAAQTWVAKLLLLLLVASFGIWGVSRELISGGSSTTVVTVGDQHVGVNEFHLAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ I
Sbjct: 61 QRQVASLSQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + +F ++FVSRL GI + +YI +K+ R+ +V G L+D
Sbjct: 121 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K + E+RSVDY++L N ++ I P++ VL WFE K YRAPEY++I+Y+
Sbjct: 181 ALKLYGDESRSVDYLLLTNANIEPIKAPADDVLAAWFEGVKQRYRAPEYRKIAYLKLQPA 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +++D+++ ++K K+ Y +PE RT+EQL F ++ A A +LK G F QL
Sbjct: 241 DIADAATVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLV 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G TPV+ GSFG VI ++NIK
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKAET 360
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T +F EVK +I Q+ ++ AS++V + +E+ A G ++++I+ + K+ ++ + VD
Sbjct: 361 TKNFDEVKDEIRKQLALSNASQEVINVHDHIEDLRAGGATLEDIAGQLKLNAVTVDAVDA 420
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GKEV IP K+QLL F + + + + + Y+W ++E P RDR +
Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPIA 479
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV +DW + E++ KA++L E K G DI LG ++ + + I R +
Sbjct: 480 EVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGITR-STD 537
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
+ G G+ FSGPV+ V + + ++ KVT P + +D ++ +
Sbjct: 538 DPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTGDVLNNRDAQLTAMAN 597
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
D+LD ++ L++QY V+ L ++
Sbjct: 598 AAGDDILDQMVNLLQTQYGAQVNQTLAEQ 626
>gi|116252238|ref|YP_768076.1| peptidyl-prolyl cis-trans isomerase D [Rhizobium leguminosarum bv.
viciae 3841]
gi|115256886|emb|CAK07980.1| putative peptidyl-prolyl cis-trans isomerase D [Rhizobium
leguminosarum bv. viciae 3841]
Length = 630
Score = 312 bits (797), Expect = 2e-82, Method: Composition-based stats.
Identities = 209/630 (33%), Positives = 360/630 (57%), Gaps = 7/630 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I+R+A++TWVAK+ L++L F +WG+S L S S+TVV+VG Q V + F ++
Sbjct: 1 MFHILRRAAQTWVAKLLLLLLVASFGVWGVSHELLSGGNSTTVVTVGDQHVDVNEFHLAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ IA
Sbjct: 61 QRQVANLSQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + +F ++F+SRL GI + +YI +K+ R+ VV G L+D
Sbjct: 121 DDPAFKAVNGRFDRELFISRLQNAGIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K + E+RSV+Y++L N ++ I P++ VL WFE K YRAPEY+++ Y+
Sbjct: 181 ALKLYGDESRSVEYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKLVYLKLQPG 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +++D++ ++K+K+ Y +PE RT+EQL F ++ A A +LK G F QL
Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFASKDLAAAAETALKSGTSFDQLV 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+QGK+ SD+ LG F+++ +PD ++AD+ F++++ G TPV+ GSFG VI V+NIK
Sbjct: 301 SDQGKTASDVLLGEFTEDKVPDQAVADAAFAVSRDGGTTPVVDGSFGPVILRVTNIKSET 360
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+F EVK+DI Q+ ++ AS++V + R+E+ A G+++++I+ + + ++ + VD
Sbjct: 361 AKNFDEVKEDIRKQLALSNASQEVINVHDRIEDLRAGGSTLEDIAGQLNLKAMTVDAVDM 420
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GKEV IP K+QLL F + + + + + Y+W ++E P RDR +
Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPVT 479
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV +DW + E++ KA+ L E K+G DI LG ++ + + + R +
Sbjct: 480 EVREKAVEDWTAEQQKAELAKKADALKAEA-KKGTALADIATPLGIAVESKSGVTR-STD 537
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
+ G G++ FSGPV+ V + + ++ KVT P + +D I+ +
Sbjct: 538 DAVLGRAGVTAAFSGPVDTVASAVGADPSTQILLKVTEVNTQPTGDVLNNRDAQITAMAN 597
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
D+LD ++ L++QY ++ L ++
Sbjct: 598 AAGDDILDQMVNLLQTQYGAQINQTLAEQA 627
>gi|307310586|ref|ZP_07590233.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
meliloti BL225C]
gi|307320968|ref|ZP_07600375.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
meliloti AK83]
gi|306893342|gb|EFN24121.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
meliloti AK83]
gi|306899696|gb|EFN30322.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
meliloti BL225C]
Length = 630
Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats.
Identities = 203/631 (32%), Positives = 345/631 (54%), Gaps = 8/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A++T V K L +L + F++WG L + + VV+VG KV S F ++
Sbjct: 1 MLDSLRNAAQTRVVKGLLALLILSFMVWG-GQTLMVPNTPNAVVTVGDVKVSASDFRLAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ ++S+++G ++ ++A++ G++ ++ LV+GA LDQ D+ L R+ I
Sbjct: 60 ERQVALLSRQLGTPLSRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FHG + +F F S L G+ E++YI++ +++ R+ +V G +L+D
Sbjct: 120 EDPAFHGANGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
++ E R++DY++L+N ++ A+ P + VL WFE K NYRAPEY++ISYI +
Sbjct: 180 AIGKYRHETRTIDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKISYIKLEPE 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++++EL+A+YEK KE Y +P RTVEQL FP+++ AD A L G F L
Sbjct: 240 DLAAPDAVTSEELRADYEKRKESYRTPATRTVEQLTFPSREAADAAAAKLAAGTSFDDLV 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ +GK+ +D+ LG F+KE +PD +AD+ F++A+ G TPV+ G+FG VI V+NI+P
Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVEGAFGPVILRVTNIRPDA 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
SF EVK+++ ++ + A E++ + ++E+ A G S+ EI+ + K+ + + VD
Sbjct: 360 VRSFDEVKEELRKEIALDAAREQLVGLHDKIEDERAGGVSVKEIAEQLKLKLVTVDAVDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+GKD G EV +P LL VF D V + W ++E IPARDR L+
Sbjct: 420 SGKDQNGDEVKDLPEPRALLQEVFKADVGTDT-LAVNIGRDGSAWFDVEEIIPARDRTLD 478
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV +V DW + +++KA +L K G DI LG + + + R N+
Sbjct: 479 EVRDEVAADWTAEQQRAALAAKAKELKERIEK-GAKLADIASELGLVVESKTGLTRATND 537
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
I F+GP V P G V+ +VT + + I + +
Sbjct: 538 ATLSPAAVI-AAFAGPNGHVANAPGIGGDGQVLMQVTAVEEKAPADALDNDSSQIEAIAR 596
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
D+LD +++ L++ Y V+++ +L + L
Sbjct: 597 ASGDDILDQMVSTLQTAYGVSINQSLAETAL 627
>gi|260459244|ref|ZP_05807499.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium opportunistum
WSM2075]
gi|259034798|gb|EEW36054.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium opportunistum
WSM2075]
Length = 630
Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats.
Identities = 181/631 (28%), Positives = 308/631 (48%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-GSSTVVSVGRQKVPFSSFINS 59
ML +R A+ TWVAK L +L V F WG+S L G +V++ G KV + + +
Sbjct: 1 MLGTLRSAAGTWVAKTLLSLLVVSFAAWGISGRLMGGFAGHDSVITAGGTKVSINEYRLA 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ ++L ++SQ+ G + E+A+ +G+D +IL LVSGA LD+ +GL R+
Sbjct: 61 YDRQLAVMSQQFGQRLTHEQAKGLGIDNQILAQLVSGAVLDEQARKLGLGLSKDRLAELT 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F G +F F L G+ ++Y+ + ++ R +V G++ +
Sbjct: 121 REDPAFKGPSGQFDRRTFEYMLHEVGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDTFF 180
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ E+R+VDY+ L V + PS++VL +FE K Y APEY++ SY+ +
Sbjct: 181 KAVALYRGEDRTVDYLTLPKALVEPVEAPSDSVLQAYFEANKKTYAAPEYRKFSYVRLEP 240
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ +++ ++ +Y KNK +Y +PE+RT+EQLVF A A SLK G F +L
Sbjct: 241 VDIMDTTAVTDQQVSDDYNKNKARYTTPEMRTIEQLVFKTPDAAKAALDSLKAGATFDKL 300
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+GK+ +D LG+ +K+ I D ++AD+ F+L +PV+ G+FG V+ V+ IKP
Sbjct: 301 VAAEGKTPADTLLGTLAKDKIADKAVADAAFALNANE-VSPVVQGAFGPVLLRVTEIKPE 359
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
EV I + + +AS + + + E+ A G+S+ + + + K+ I + +D
Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVHDNYEDTRASGSSLADAAAKLKLKDITIDAID 419
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+G G V +P +L+ VF + D + D +++ ++ PARDR L
Sbjct: 420 RSGLRPDGSIVKDLPESPELIKAVFDAEPNTENDG-LTTADNGFIFYEVGSVTPARDRTL 478
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
+EV V DW +T + +++KA++L + K G I L T + R
Sbjct: 479 DEVRKKVVADWTAAETTKRLAAKADEL-EKRLKAGATLDVIAGELKLEKQTKRGLRRE-A 536
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF----ISYLT 595
++ FG +G + +F P G ++FKV + T
Sbjct: 537 DDADFGKEGAAVMFGVGEGGTGLIPSPTGDGQILFKVAEVFEPAGADASSVPEDAQKSFT 596
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
M+ DLLD ++A L++QY V V + +
Sbjct: 597 SGMSDDLLDQLVAQLQTQYDVRVDQAAVAQA 627
>gi|15965412|ref|NP_385765.1| putative peptidyl-prolyl cis-trans isomerase protein [Sinorhizobium
meliloti 1021]
gi|15074593|emb|CAC46238.1| Putative peptidyl-prolyl cis-trans isomerase [Sinorhizobium
meliloti 1021]
Length = 630
Score = 311 bits (794), Expect = 3e-82, Method: Composition-based stats.
Identities = 203/631 (32%), Positives = 345/631 (54%), Gaps = 8/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A++T V K L +L + F++WG L + + VV+VG KV S F ++
Sbjct: 1 MLDSLRNAAQTRVVKGLLALLILSFMVWG-GQTLMVPNTPNAVVTVGDVKVSASDFRLAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ ++S+++G ++ ++A++ G++ ++ LV+GA LDQ D+ L R+ I
Sbjct: 60 ERQVALLSRQLGTPLSRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FHG + +F F S L G+ E++YI++ +++ R+ +V G +L+D
Sbjct: 120 EDPAFHGANGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
++ E R++DY++L+N ++ A+ P + VL WFE K NYRAPEY++ISYI +
Sbjct: 180 AIGKYRHETRTIDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKISYIKLEPE 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++++EL+A+YEK KE Y +P RTVEQL FP+++ AD A L G F L
Sbjct: 240 DLAAPDAVTSEELRADYEKRKESYRTPATRTVEQLTFPSREAADAAAAKLAAGTSFDDLV 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ +GK+ +D+ LG F+KE +PD +AD+ F++A+ G TPV+ G+FG VI V+NI+P
Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVEGAFGPVILRVTNIRPDA 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
SF EVK+++ ++ + A E++ + ++E+ A G S+ EI+ + K+ + + VD
Sbjct: 360 VRSFDEVKEELRKEIALDAAREQLVGLHDKIEDERAGGVSVKEIAEQLKLKLVTVDAVDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+GKD G EV +P LL VF D V + W ++E IPARDR L+
Sbjct: 420 SGKDQNGDEVKDLPEPRALLQEVFKADVGTDT-LAVNIGRDGSAWFDVEEIIPARDRTLD 478
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV +V DW + +++KA +L K G DI LG + + + R N+
Sbjct: 479 EVRDEVAADWTAEQQRAALAAKAKELKERIEK-GAKLADIASELGLVVESKTGLTRATND 537
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
I F+GP V P G V+ +VT + + I + +
Sbjct: 538 ATLSPAAVI-AAFAGPNGHVANAPGIGGDGQVLMQVTAVEDQAPADALDNDSSQIEAIAR 596
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
D+LD +++ L++ Y V+++ +L + L
Sbjct: 597 ASGDDILDQMVSTLQTAYGVSINQSLAETAL 627
>gi|327192898|gb|EGE59819.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
[Rhizobium etli CNPAF512]
Length = 630
Score = 310 bits (793), Expect = 4e-82, Method: Composition-based stats.
Identities = 210/629 (33%), Positives = 355/629 (56%), Gaps = 7/629 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M +R+A++TWVAK+ L++L F IWG+S L S S+TVV+VG Q V + F ++
Sbjct: 1 MFHFLRRAAQTWVAKLLLLLLVASFGIWGVSRELISGGSSTTVVTVGDQHVGVNEFHLAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ I
Sbjct: 61 QRQVASLSQQFGMRLTPEQARAFGVEQQVLSQLVAGASLDQLAEDMNLGLSEDRLAQLIG 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + +F ++FVSRL GI + +YI +K+ R+ +V G L+D
Sbjct: 121 DDPAFKAVNGQFDRELFVSRLRNAGIRQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K + E+RSVDY++L N ++ I P++ VL WFE K YRAPEY++I+Y+
Sbjct: 181 ALKLYGDESRSVDYLLLTNANIEPIKAPADDVLAAWFEGVKQRYRAPEYRKIAYLKLQPT 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +++D+++ ++K K+ Y +PE RT+EQL F ++ A A +L G F QL
Sbjct: 241 DIADAATVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALNSGTSFDQLV 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G T V+ GSFG VI ++NIK
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTSVVDGSFGPVILRITNIKAET 360
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T +F EVK +I Q+ ++ AS++V + R+E+ A G ++++I+ + K+ ++ + VD
Sbjct: 361 TKNFDEVKDEIRKQLALSNASQEVINVHDRIEDLRAGGATLEDIAGQLKLNAVTVDAVDA 420
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GKEV IP K+QLL F + + + + + Y+W ++E P RDR +
Sbjct: 421 TGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPIA 479
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV +DW + E++ KA++L E K G DI LG ++ + + I R +
Sbjct: 480 EVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGITR-STD 537
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
+ G G+ FSGPV+ V + + ++ KVT + +D ++ +
Sbjct: 538 DPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQSTGDVLNNRDAQLTAMAN 597
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
D+LD ++ L++QY V+ L ++
Sbjct: 598 AAGDDILDQMVNLLQTQYGAQVNQTLAEQ 626
>gi|254469828|ref|ZP_05083233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp.
JE062]
gi|211961663|gb|EEA96858.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudovibrio sp.
JE062]
Length = 628
Score = 310 bits (792), Expect = 6e-82, Method: Composition-based stats.
Identities = 163/631 (25%), Positives = 305/631 (48%), Gaps = 10/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R + +W AKI + +L + F +WG++D +F+ GS++V SVG +++ F ++
Sbjct: 1 MLDALRNSVGSWFAKILIGLLVLSFAVWGIAD-VFTGIGSTSVASVGDKEISAQDFQRAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+EL +S+++G V E+A + G+ ++L LV+ A LD + + + I
Sbjct: 60 SRELDQLSRRVGQPVTQEQAAAFGVPAQVLGRLVAEAALDNEASKLRIGVSDEAIIKTIQ 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P F G + + + L G++E E++ + R + +GG+ +L+
Sbjct: 120 ETPAFQGVNG-YDRNRLGQVLYNLGMSEDEFVMQQQLVAERQQLAEAVIGGIVVPETMLE 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
++ E R+V+Y+VL + + P++ L +FE+ K NY+APEY+ + I
Sbjct: 179 AFDKYAMEERTVEYLVLPKSSLTDVPAPTDEELNAFFEENKGNYKAPEYRSATIIELTSD 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ K ++++E+ EYE+ K +Y S E R + Q+ FP ++EA+ A + GK F L
Sbjct: 239 KIAKPENVTDEEIAQEYERTKNRYQSQEQRRIYQISFPTKQEAEAAVVEMDSGKTFEDLM 298
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
E+ + D+ LG +K D +AD+ F+L + G + V+ G F I +KP+
Sbjct: 299 NERDLTEKDVDLGLMNKAGFLDQKIADAAFALQE-GQASNVVEGQFTNAILFAKEVKPAA 357
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
++VK ++ + A+++V++ + +E+ A G++ +EI+ R + I+ P D
Sbjct: 358 VQPLEDVKDELRTVVAQANAADEVEDLFNEVEDARAGGSTFEEIAERFDLELINTPAFDA 417
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+G + G+ V +P +L VF D + D + + ++W ++KE P+RDR+L
Sbjct: 418 SGNNEAGETV-ELPIANELTTAVFSTDVGVEND-PLEIGRTGHLWYEVKEVTPSRDRELS 475
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V DW +T E + KA L+ E + GK+ +I G + T+ R
Sbjct: 476 EVKEAVTADWTANRTGELLEEKAKTLIAE-VEAGKSLSEIAAAEGLTTTTSQPFTRNGGV 534
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQM 597
+ I+ FSGP P N ++ + + + + LT
Sbjct: 535 -QGLSGSAITAAFSGPKGTAAQVPGNNEDRILLVLTDTTAPAFMTESENAQRINTQLTGA 593
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ LL+ I L+ V V+ + +
Sbjct: 594 LESSLLNQFINQLEQTEGVLVNQAVFNQLTG 624
>gi|241204737|ref|YP_002975833.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
[Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240858627|gb|ACS56294.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
[Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 630
Score = 310 bits (792), Expect = 6e-82, Method: Composition-based stats.
Identities = 208/630 (33%), Positives = 361/630 (57%), Gaps = 7/630 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I+R+A++TWVAK+ L++L V F WG+S L + S+TVV+VG Q V + F ++
Sbjct: 1 MFHILRRAAQTWVAKLLLLLLVVSFGAWGVSHQLLTGGNSTTVVTVGDQHVDVNEFHLAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ IA
Sbjct: 61 QRQVANLSQQFGTRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + +F ++F+SRL I + +YI +K+ R+ VV G L+D
Sbjct: 121 DDPAFKAVNGRFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K + E+RS+DY++L N ++ I P++ VL WFE K YRAPEY++++Y+
Sbjct: 181 ALKLYGDESRSIDYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKLAYLKLQPA 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +++D++ ++K+K+ Y +PE RT+EQL F ++ A A +LK G F QL
Sbjct: 241 DIADAATVTDDQIHEAFDKSKDTYRTPESRTIEQLTFASKDLATAAETALKSGTSFDQLV 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+QGK+ SD+ LG F+K+ +PD ++AD+ F++++ G TPV+ GSFG VI V+NIK
Sbjct: 301 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSRDGGTTPVVDGSFGSVILRVTNIKSET 360
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+F EVK+DI Q+ ++ AS++V + R+E+ A G+++++I+ + K+ ++ + VD
Sbjct: 361 AKNFDEVKEDIRKQLSLSNASQEVINVHDRIEDLRAGGSTLEDIAGQLKLKAVTVDAVDM 420
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D G+EV IP K+QLL F + + + + + Y+W ++E P RDR +
Sbjct: 421 TGADKDGQEVKDIPVKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPVA 479
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV +DW + E++ KA+ L E K+G DI LG ++ + + + R +
Sbjct: 480 EVREKAVEDWTAEQQKAELAKKADALKAEA-KKGTALADIATPLGIAVESKSGVTR-STD 537
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
+ G G++ FSGP++ V + + ++ KVT P + +D I+ +
Sbjct: 538 DAVLGRAGVTAAFSGPLDTVASAVGADPSTQILMKVTEVNTQPTGDVLNNRDAQITAMAN 597
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
D+LD ++ L++QY ++ L ++
Sbjct: 598 AAGDDILDQMVNLLQTQYGAEINHTLAEQA 627
>gi|13470813|ref|NP_102382.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium loti
MAFF303099]
gi|14021556|dbj|BAB48168.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium loti
MAFF303099]
Length = 630
Score = 310 bits (792), Expect = 6e-82, Method: Composition-based stats.
Identities = 179/631 (28%), Positives = 313/631 (49%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-GSSTVVSVGRQKVPFSSFINS 59
ML I+R A+ TWVAK L +L V F WG+S L G +V+ G KV + + +
Sbjct: 1 MLGILRSAAGTWVAKTLLSLLVVSFAAWGISGRLMGGFAGHDSVIIAGGTKVSINEYRLA 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ ++L ++SQ+ G + E+A+++G+D ++L LVSGA LD+ +GL R+
Sbjct: 61 YDRQLAVMSQQFGQRLTHEQAKALGIDNQVLAQLVSGAVLDEQARKLGLGLSKDRLAELT 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F G +F F L + G+ ++Y+ + ++ R +V G++ +
Sbjct: 121 REDPAFKGPGGEFDRRTFEYMLRQVGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDAFF 180
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ E+R+VDY++L + V I PS++VL +FE K Y APEY++ SY+ +
Sbjct: 181 KAVALYRGEDRTVDYLLLPKKLVEPIEAPSDSVLQAYFEANKKTYAAPEYRKFSYVRLEP 240
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ ++ ++ +Y KNK +Y +PE+RT+EQLVF A A SLK G F +L
Sbjct: 241 VDIMDPTAVTEQQVSDDYNKNKTRYTTPEMRTIEQLVFKTPDAAKAALDSLKAGATFEKL 300
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+GK+ +D LG+ +K+ I D ++AD+ F+L + V+ G+FG V+ V+ IKP
Sbjct: 301 VTAEGKTPADTLLGTLAKDKIADKAVADAAFALNANE-VSQVVQGAFGPVLLRVTEIKPE 359
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
EV I + + +AS + + + E+ A G+S+ + + + K+ + + +D
Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVHDNYEDTRASGSSLADAAAKLKLKDVTIDAID 419
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+G G V +P L+ VF + P +++ + D +++ ++ PARDR L
Sbjct: 420 RSGLRPDGSIVKDLPESPALIKAVFDAE-PKTENEALTTADNGFIFYEVASITPARDRTL 478
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
+EV V DW +T + +++KA++L + K G I +L T + R
Sbjct: 479 DEVRQKVVADWTAAETTKRLAAKASEL-DKRLKAGATLDVIAGDLKLEKQTKRGLKRE-A 536
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF----ISYLT 595
++ FG +G + +F P G ++FKV + T
Sbjct: 537 DDADFGKEGAAVMFGVGEGGTGLIPSPTGDGQILFKVAEVFEPAGADASSVPEDAQKSFT 596
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
M+ DLLD ++A L++QY V + + +
Sbjct: 597 SGMSDDLLDQLVAQLQTQYDVRIDQAAVAQA 627
>gi|217976694|ref|YP_002360841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
silvestris BL2]
gi|217502070|gb|ACK49479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
silvestris BL2]
Length = 636
Score = 310 bits (792), Expect = 6e-82, Method: Composition-based stats.
Identities = 163/639 (25%), Positives = 302/639 (47%), Gaps = 16/639 (2%)
Query: 1 MLEIIRKASRTWV----AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML+ +R A++ W+ I L + + F +WG+ D +F G++ + VG +++ +F
Sbjct: 1 MLDAMRAATKGWIGRTVMGIVLGFIILSFAVWGIGD-IFRGFGANKLAEVGNEQITTEAF 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ EL ++ + ++ A+ GLD+++L LVS A LDQ +GL +
Sbjct: 60 RFAYQTELQRAQRQARRAITNDEAKRFGLDRQVLSRLVSEAVLDQETHALGLAMSDAEIA 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
IA P F G +F F L G+ EK ++ + R +++ G++
Sbjct: 120 RTIAADPSFKGASGQFDRARFEELLRDNGLTEKAFVREQRGVYLRQELIDSMTNGLQLPK 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+L+ R+ E R++DY VL IA PS+ L ++FE K Y APEY+ + +
Sbjct: 180 AMLELIHRYQTETRTLDYFVLPAAAAGTIALPSDDELGKYFEDRKLGYSAPEYRTLVTLT 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
K +S+ + Y++ K EKY +PE R ++QL F + A A + L G
Sbjct: 240 LTPESIAKPDAVSDADALRRYDEIKGEKYGAPEKRQIDQLFFSDPAAAAAAREKLDAGAS 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F + +QG ++ D+SLG ++ + D ++AD F+L + + + FG V+ V+
Sbjct: 300 FEDIVAQQGSTMKDVSLGLVTRGQLIDKAVADVAFALPESA-VSAPVKTQFGSVLIRVAA 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
I+PS F++VK++I ++ T+A ++ + +E+ A G ++ E ++ + +
Sbjct: 359 IEPSSAKPFEDVKEEIKREIATTRARGEIARLHDAIEDQRASGKTLTEAAKSAGLEVRVI 418
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
P VD GKD G +A + LL F D + T++LP G Y W ++ + AR
Sbjct: 419 PAVDAGGKDAAGVPIADLANSAALLKAGFASDLGVDN-ETLSLPQGGYQWFEVGKIDRAR 477
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
+ EE V+K W+ +TA+ +++K L + + G+ + G + +
Sbjct: 478 QKSFEEAKPAVEKAWRDDETAKLMTAKTIDL-TKRLESGEPMAKVAAEGGFEVKRAQNVR 536
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK----FI 591
R +N F ++Q F+ V V +E G +VFKV + P+ D
Sbjct: 537 RGGGDN--FPQPAVAQAFNVGVGGVGSTRLEAGDR-LVFKVAGATAPPIDFADATLVSLA 593
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
+ + + + DL+ + L+++ V ++ + G
Sbjct: 594 NEVKKSYSDDLVTQYLGTLQNKLGVKINAQALAAATSGS 632
>gi|154253607|ref|YP_001414431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
lavamentivorans DS-1]
gi|154157557|gb|ABS64774.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
lavamentivorans DS-1]
Length = 631
Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats.
Identities = 164/634 (25%), Positives = 313/634 (49%), Gaps = 10/634 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R+ + WVAK+ + +L + F +WG++D +F+ G TV VG QK+ +++
Sbjct: 1 MLDSLRRNASGWVAKVLIGLLALSFAVWGIAD-IFTGFGGDTVAEVGDQKIDAATYQVEL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E+ SQ++G ++ ++AR G+D+ L L+S A LD D+GL V +I
Sbjct: 60 RNEMNQFSQRLGQPLSLDQARQFGIDRAALSRLISLAALDGAASDLGLAVGDEAVGIDIT 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P G +F D+F L + GI+E+ +I+ + +SR V+ + G+ L++
Sbjct: 120 TDPNLQGPFGRFDRDLFRQSLQQNGISEERFIEQRRRAMSRKQVIEVIQVGVAAPEALIE 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
RF E R Y++L V IADP + +++E + PE + S ++ +
Sbjct: 180 MVSRFQEETRVAGYVILPQSLVGEIADPDEETVQKFYEAGASAFTLPETRDFSIMVLEPE 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ + + +S ++LQA YE+ + +Y PE R V Q+ F +++EA+EA L+ G+ +
Sbjct: 240 DVTRTMAVSEEDLQAAYEQRRGEYDVPERRDVHQITFASEEEANEALTKLRGGENVETVV 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ G ++ D+ LG S++ + LAD+ FSL G + + G G+ I HV+ I+P
Sbjct: 300 KGLGLTMKDVDLGKVSRDDMLSPELADAAFSLEGTGY-SEPVRGPLGWSILHVTGIEPGK 358
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
++++VK+++ + + A +++ + +E+ A G + ++++R + + +
Sbjct: 359 PSTYEDVKEELRAAIELELARDQIYDIQNTIEDARAGGEPLADVAKRYNLTVRSIDGITA 418
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
GK G V +P LL V+ + + + Y WV+I PA + L+
Sbjct: 419 DGKTRNGDTV-ELPELPDLLNTVYE-NQQGDQIPPLDSGKDGYYWVEIDAVNPAELQPLD 476
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK K A+++ + A LV E G++F I G S+L+T + R +
Sbjct: 477 EVRDRVVSIWKQQKRADDLEALATSLV-ERGNAGESFEKIAAEYGRSVLSTPPLQRY-AQ 534
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
N F ++++F+ P P+ G S +V +V + + + + + L
Sbjct: 535 NDTFSRTAVTRLFAAPEGGFTFGPVGLGDSLIVMQVKDVRSPQLDANSDKYKETRTTLVD 594
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
+ D+L + + + + V V++ L Q+ +
Sbjct: 595 AIQADMLQTFVVGYQQELGVEVNNTLFQQMTATD 628
>gi|39935954|ref|NP_948230.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris CGA009]
gi|39649808|emb|CAE28330.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodopseudomonas
palustris CGA009]
Length = 633
Score = 309 bits (789), Expect = 1e-81, Method: Composition-based stats.
Identities = 156/629 (24%), Positives = 293/629 (46%), Gaps = 15/629 (2%)
Query: 1 MLEIIRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML +RKAS W+ K I + VL V F +WG++D +F G ST+ +G ++ F
Sbjct: 1 MLRGMRKASSNWIGKTIMTIVMGVLIVSFGVWGIAD-VFRGFGRSTLAKIGSTEISTEQF 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++ L I ++ G + ++AR++G+D+++L ++ A LD+ +GL
Sbjct: 60 RQTYNDRLQQIGRQFGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTM 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F G + +F + F + + G E+ Y+ ++ R + G G+
Sbjct: 120 KSILEDPNFKGANGQFDANRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGSLTAGLEAPK 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
L+ +F E R++DY+ L + IA PS A LT +++ +K +RAPEY++IS+++
Sbjct: 180 TLMQALSQFQSEERAIDYLKLTDAQAGTIAAPSPADLTAFYDSHKAQFRAPEYRKISFLV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K E+S+ + Q +E+ K+K +PE R + Q+VFP+ +EA + G F
Sbjct: 240 VTPESIAKWAEVSDADAQKLFEQRKDKLSTPEKRQLLQIVFPSVEEAQAGRAKIASGTSF 299
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA+E+G +D+ LG S+ + D +A + F+L + + G FG V+ V+ I
Sbjct: 300 ADLAKERGVKPADLDLGLVSQSEMLDQKVAAAAFALPLNE-VSQPVQGQFGTVLLEVTKI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ + V + + +A ++V+E + ++E+ G S+ + +++ + ++ +
Sbjct: 359 ETGKQPDYASVAASLKRDLAQERARKQVQELHDKMEDARGGGASVVDAAKQLGLTAVTVD 418
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+D AG+ G VA+IP +L F + + D Y+W I P+ +
Sbjct: 419 AIDRAGRGPDGAPVASIPQGLELANAAFNSEPGVDNDA--ISFQNGYVWYDILGITPSHE 476
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R L+EV V+ W+ + E++ A +LV + + G D+ G ++ T + I R
Sbjct: 477 RPLDEVKDKVEAGWRAEQVTEKLRKLAAELVQKL-QGGAKLSDVAPA-GVTVQTASGIKR 534
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFIS 592
+ + VF + + + VF+VT V + +
Sbjct: 535 EGADA-GLPNTVVDAVFRTAKDGAGQVQGGSATEWYVFRVTGDTVPTADLNAPQMQQLKD 593
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
L Q + + + IA+L+ V+
Sbjct: 594 NLVQRLRDEQVGEYIAWLEKDIGTKVNQE 622
>gi|150396621|ref|YP_001327088.1| putative peptidyl-prolyl cis-trans isomerase [Sinorhizobium medicae
WSM419]
gi|150028136|gb|ABR60253.1| putative peptidyl-prolyl CIS-trans isomerase protein [Sinorhizobium
medicae WSM419]
Length = 630
Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats.
Identities = 191/631 (30%), Positives = 336/631 (53%), Gaps = 8/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A++T V K L +L + F++WG L + + VV+VG KV S F ++
Sbjct: 1 MLDSLRNAAQTRVVKALLALLILSFMVWG-GQTLMVPNTPNAVVTVGDIKVSPSDFRLAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ ++S+++G + ++A++ G++ ++ LV+GA LDQ D+ L R+ I
Sbjct: 60 ERQVALLSRQLGTPLTRQQAQAFGVENQVYAQLVAGAALDQLATDMNLGLSEDRLARLIG 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FHG + +F F S L G+ E++YI++ +++ R+ +V G +L++
Sbjct: 120 EDPAFHGVNGQFDRLTFSSVLRNAGLTEQDYINNRSQVAVRSQIVDALTDGYTAPKVLVE 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
++ E R+VDY++L+N ++ A+ P + VL WFE K NYRAPEY++ SYI +
Sbjct: 180 AVDKYRHETRTVDYLLLSNANIDAVKTPGDDVLAPWFESRKANYRAPEYRKFSYIKLEPE 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ +EL+A+Y+K KE + +P RTVEQL FP+++ AD A L G F L
Sbjct: 240 DLAASDSVTEEELRADYDKRKESFRTPATRTVEQLAFPSREAADAAAAKLSAGTSFDDLV 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ +GK+ +D+ LG F+KE +PD +AD+ F++A+ G TPV+ G FG VI V+NI+
Sbjct: 300 KAEGKTSADVLLGDFTKERMPDAKIADAAFAVAQDGGTTPVVDGPFGPVILRVTNIRSEA 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
S+ EVK+++ ++ + A +++ + ++E+ A G ++ EI+ + K+ + + VD
Sbjct: 360 VRSYDEVKEELRKEIALDAARDQLVGLHDKIEDERAGGVTVKEIAEQLKLKLVTVVAVDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+GKD G +V +P LL VF D V + +W ++E IP RDR L+
Sbjct: 420 SGKDQNGDDVKDLPEPRALLQEVFKADVGTDTLS-VNIGRDGSVWFDVEEIIPGRDRTLD 478
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV +V DW + + + + E ++G DI LG + T + R N+
Sbjct: 479 EVRDEVAADWTAEQ-QRAALAAKAKELKERVEKGAKLADIASELGLVVETKTGLTRSTND 537
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
I F G V P G V+ +VT + + + I + +
Sbjct: 538 ATLSPAAVI-AAFGGANGHVANAPGIGGDGQVLMQVTAVEEKAPADALDNDSRQIEAIAR 596
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
D+LD +++ L++ Y V+++ L + L
Sbjct: 597 ASGDDILDQMVSTLQTAYGVSINQTLAETAL 627
>gi|328543803|ref|YP_004303912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [polymorphum gilvum
SL003B-26A1]
gi|326413547|gb|ADZ70610.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polymorphum gilvum
SL003B-26A1]
Length = 630
Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats.
Identities = 158/632 (25%), Positives = 299/632 (47%), Gaps = 11/632 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RK + T+VAKIF+ +L + F +WG++D +F G + VG ++ SF ++
Sbjct: 1 MLDALRKGAGTFVAKIFIALLILSFAVWGIAD-IFQGFGRNVAARVGDTEISLQSFDQAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++EL +S++IG +++ +GL +++L LV+ A LD + L + I
Sbjct: 60 RRELSALSRQIGRPLSTTEGAQIGLPQQVLGRLVAEAALDDDARAMTLGISDAELIRVIQ 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P+F F L GI+E +Y+ ++ R + G + +LL+
Sbjct: 120 ADPVFQRPGGGFDRARLAQLLRANGISEDDYVVERRRLAERQQIAEALSGSLISPQVLLE 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E R+V Y++L V +IA+P +A L +F+ + +RAPEY+R++ +
Sbjct: 180 AFNAYQNETRTVRYLLLTPAAVGSIAEPDDAALEAYFDDNRAAFRAPEYRRLALLELTPD 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ E+++ + ++ YE+ ++ E R V Q+ FP+ A A + L G F +L
Sbjct: 240 AVARPDEVTDADARSAYERAGSRFSEDERRRVRQMPFPDADAARAAAERLASGASFAELM 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
E+ + +D+ LG K D ++A++ F+L + G + + G F VI + I+P+
Sbjct: 300 AERNLAEADVDLGLMRKSDFLDPAIAEAAFALDE-GAVSGAVEGRFATVILEAAEIRPAA 358
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T F+EV+ ++ ++ +A +V + + +E+ A G ++ EI+ R K+ P +D
Sbjct: 359 TRPFEEVRDELKQEIARERAEREVLDIHDEIEDARAGGAALAEIAERFKLALATPPALDA 418
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
GK G V+ +P + LL F D + D + L + ++W ++ E IPARDR L+
Sbjct: 419 TGKAETGATVS-LPDGDGLLREAFDSDVGIEND-PLPLGERGFVWYEVAEVIPARDRPLD 476
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V W + + ++ + + K G++ + +LG + T+ + R +
Sbjct: 477 EVRPSVVIAWGAAERIKRLADLS-AGTADRLKAGESLDVVAADLGLEVKTSAPLKR-ATD 534
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
+ F FSGP V ++G +V V E + +
Sbjct: 535 SGDFTAAAAGSAFSGPAGTVAEAAGKDGNR-IVMMVDAISSPAFFMEADEVKAIDEQVAR 593
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ LL+ ++ ++ V V+ I + L
Sbjct: 594 QLQDSLLNQYVSEIERTRGVEVNQAAIAQVLG 625
>gi|209885424|ref|YP_002289281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
carboxidovorans OM5]
gi|209873620|gb|ACI93416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
carboxidovorans OM5]
Length = 704
Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats.
Identities = 158/637 (24%), Positives = 292/637 (45%), Gaps = 17/637 (2%)
Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
ML IR + W+ + VL + F +WG++D +F S +T+ +VG ++ F
Sbjct: 71 MLRGIRNVTSNRVGKWIMSLLFGVLIISFAVWGIAD-IFKGSTQTTLATVGNTEISMEQF 129
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++ +L IS++I +N+ + R+ GLD+++L ++ A LD+ +GL +
Sbjct: 130 RTAYTDKLQQISRQIRRPINANQGRAFGLDRQLLQQTIAEAALDEETRRLGLTMSDAEMI 189
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I+ P F G D KF F + + G E+ Y+ ++ R ++V V G+ PS
Sbjct: 190 RTISGDPTFAGPDGKFDARRFAAAIRDNGYTEQRYVAEQRRVTLRRELVSSIVAGLEPSK 249
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
++ RF E R++DY + I PS VL +++++K +RAPEY+++ Y+
Sbjct: 250 TQIEALSRFQNEQRTIDYAKIGPEQAGTIETPSQQVLDTYYDEHKAQFRAPEYRKVVYLT 309
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
E KK+ +S+++ + Y+ +++Y +P R V Q+ FP++ A A + + G F
Sbjct: 310 LSPDELAKKVAVSDEDARKVYDSRRDEYATPAKREVLQIAFPSEDAAKTAREKIAGGTSF 369
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA+E + DI+LG S+ + D ++A + F+L + + G+ V+ ++ I
Sbjct: 370 EDLAKEMKLTPGDINLGLTSEASLGDPTIAKAAFALPLNE-VSQPVKGALATVLLKITKI 428
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P +++ V I ++ + +E+ + G ++ E ++ + ++ +
Sbjct: 429 EPGSQSTYESVAPAIKKEIAEQRVRADFDNLRNTIEDERSGGATIPEAGQKVGLDAVTVD 488
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+D AG+ GKE AA+P L+ FG D + D G +W + +RD
Sbjct: 489 -IDRAGRTPDGKE-AALPKGVDLVTAAFGSDVGVENDPL--TFPGGEVWFDVLGVTASRD 544
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R L+EV V W+ + A + +KA LV +K G F+ G S T++ R
Sbjct: 545 RALDEVKDQVATRWREDQVATRLRAKAKDLVEAINKGGA-FKTEATKAGLSAQTSSPFKR 603
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNSKVG----PVQEKDKFI 591
D N + F P + G VV KV N ++ K
Sbjct: 604 DDKVN-GLPDQAVDVAFRTPKDTAATADNGAAGNGLVVLKVVNVTTPTVDLESEDSKKMK 662
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
L Q ++ + + I +L+++ V V+ N
Sbjct: 663 EALEQNLSDEQIGQYITHLEAKAGVQVNQNAFAIATG 699
>gi|298291797|ref|YP_003693736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM
506]
gi|296928308|gb|ADH89117.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Starkeya novella DSM
506]
Length = 629
Score = 305 bits (779), Expect = 2e-80, Method: Composition-based stats.
Identities = 165/631 (26%), Positives = 288/631 (45%), Gaps = 6/631 (0%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE +RK++ VAKI + +L V F IWG++D +F GS T+ ++G ++ F +
Sbjct: 1 MLETLRKSASGIVAKILMGLLIVSFGIWGIAD-VFRGFGSQTLATIGDTEITVPEFRQLY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q L +SQ++ + E+AR+ G+ ++L ++ A L+ + +GL + +
Sbjct: 60 QQRLQQVSQQLKRGITPEQARAFGIPDQLLQEQLAEAALNDQAKSLGLALSDAEIARRVQ 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P F G F + F L G E +++ + R ++ GG+ +L D
Sbjct: 120 SNPSFFGPGGSFDPNYFNQLLRSNGFTEARFVEAERGLAVRQQLIQSLGGGVTVPQVLKD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R+ E RSV+Y +L +PA+A+PS+ L ++F++ K +RAPEY+++S ++
Sbjct: 180 ALARYESEERSVNYAMLTAHALPALAEPSDEELRKFFDERKIAFRAPEYRKVSVLVLTPE 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
IS+ +++A Y+ N Y +PE R V+Q+VFPN++EA A + G F +
Sbjct: 240 ALANSESISDADVEAAYKANLASYGTPEKRVVQQIVFPNEQEAAAAAARITAGTPFADII 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
E+ D+ LG ++ I D + + V+ G FG VI HV + P
Sbjct: 300 AERKLEAKDVELGDVTRADIFDKA-VADAAFALAPDATSGVVAGRFGPVIVHVGTVTPGT 358
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T EV I Q+++ A V Y ++E+ A G + EI+ + I +
Sbjct: 359 TKPLTEVAGQIRTQLQLDTARRAVLTKYDQIEDERAGGAMLAEIASKAGIPVQSFD-TNI 417
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G+ G + +IP + ++L F D D +G Y+W + RDR E
Sbjct: 418 QGQTPDGSSIPSIPGRAEVLRGAFAADVGSDNDPVQLPQNGGYVWFAVDGITAPRDRTFE 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
E V WK +TA+ + K + + G+ F + G L N + R
Sbjct: 478 EARAQVLDRWKQDQTAQALDKKVEDIKAK-VAGGEAFDKAVTDAGLELRAANGLRR-GRA 535
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMN 599
D + VF P V E G S ++F+V V P + +K +S + Q +
Sbjct: 536 ADGVPQDILEAVFETPQGQVGSSLAEGGESRLLFQVLRVSVPPAATQDEKLLSDVRQSLE 595
Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
DL+ + L+ Q ++ + + + +
Sbjct: 596 NDLMTEYVVELQGQLGPRINRAALDQIVGTD 626
>gi|192291606|ref|YP_001992211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris TIE-1]
gi|192285355|gb|ACF01736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris TIE-1]
Length = 629
Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats.
Identities = 156/625 (24%), Positives = 293/625 (46%), Gaps = 15/625 (2%)
Query: 5 IRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
+RKAS W+ K I + VL V F +WG++D +F G ST+ +G ++ F ++
Sbjct: 1 MRKASSNWIGKTIMTIVMGVLIVSFGVWGIAD-VFRGFGRSTLAKIGSTEISTEQFRQTY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
L I ++ G + ++AR++G+D+++L ++ A LD+ +GL I
Sbjct: 60 NDRLQQIGRQFGRPLTPDQARAIGIDRQVLQQTIAEAALDEDARRLGLGQSDADTMKSIL 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F G + +F + F + + G E+ Y+ ++ R + G G+ P L+
Sbjct: 120 EDPNFKGANGQFDANRFQQLIRQFGFTEQRYLAEQRRVALRRQIAGSLTAGLEPPKTLMQ 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+F E R++DY+ L + IA PS A LT +++ +K +RAPEY+++S+++
Sbjct: 180 ALSQFQNEERAIDYLKLTDAQAGTIAAPSPADLTAFYDSHKAQFRAPEYRKVSFLVVTPE 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
K E+S+ + Q +E+ K+K +PE R + Q+VFP+ +EA A + G F LA
Sbjct: 240 SIAKWAEVSDADAQKLFEQRKDKLSTPEKRQILQIVFPSVEEAQAARAKIASGTSFADLA 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+E+G D+ LG S+ + D +A + F+L + + G FG V+ V+ I+P
Sbjct: 300 KERGVKPGDLDLGLVSQSEMLDQKVAAAAFALPLNE-VSQPVQGQFGTVLLEVTKIEPGK 358
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+ V + + +A ++V+E + ++E+ G S+ + +++ + ++ + +D
Sbjct: 359 QPDYASVAASLKRDLAQERARKQVQELHDKMEDARGGGASVVDAAKQLGLTAVTVDALDR 418
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
AG+ G VA+IP +L F + + D Y+W I P+ +R L+
Sbjct: 419 AGRGPDGAPVASIPQGLELANAAFNSEPGVDNDA--ISFQNGYVWYDILGITPSHERPLD 476
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V+ W+ + E++ A +LV + + G D+ G ++ T + I R +
Sbjct: 477 EVKDKVEAGWRAEQVTEKLRKLAAELVQKM-QGGAKLADVAPA-GVTVQTASGIKREGAD 534
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFISYLTQ 596
+ VF + + + VF+VT V + + L Q
Sbjct: 535 A-GLPNTVVDAVFRTAKDGAGQVQGGSATEWYVFRVTGDTVPTADLNAPQMQQLKDNLVQ 593
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDN 621
+ + + IA+L+ V+
Sbjct: 594 RLRDEQVGEYIAWLEKDIGTKVNQE 618
>gi|222148891|ref|YP_002549848.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
gi|221735877|gb|ACM36840.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
Length = 629
Score = 304 bits (776), Expect = 4e-80, Method: Composition-based stats.
Identities = 204/631 (32%), Positives = 340/631 (53%), Gaps = 8/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML I+RKA+ TWVAK L++L F IWG+S ++ S S V+ VG Q V + F ++
Sbjct: 1 MLVILRKAAGTWVAKGLLLLLVASFAIWGISSSIMS-DTSDKVIKVGSQSVNSNEFRLAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ +S++ G + SE+ARS+G++ ++ LV+GA LDQ D+ L R+ I
Sbjct: 60 QRQISDLSRRFGTQLTSEQARSLGIESQVYQQLVAGAALDQLASDMNLGLSQDRLAQLIG 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + +F +F SRL GI E++YI +K+ R+ +V G P +L+D
Sbjct: 120 DDPAFKNTNGQFDRQLFTSRLRNSGIREQDYITERSKVAVRSQIVDATAEGFVPPKVLID 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K + E+RS+DY++L ++ I P VL WF K YRAPEY+ SY+ +
Sbjct: 180 ALKLYRQESRSIDYLLLTTANIDPIKAPDETVLKTWFNTMKSRYRAPEYRSFSYVKLEPA 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +++++++ EY+ N +K+ RT+EQL FP ++ A+ A QSLK GK F QL
Sbjct: 240 DIADPKAVTDEQVKQEYDANLKKFEVAGTRTLEQLTFPTKELAETAAQSLKNGKTFDQLV 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+QGK+ +D+ LG F++ IPD LAD+ F++AK D TPV+ G+FG VI VSNIKPS
Sbjct: 300 ADQGKTATDVLLGDFTRADIPDQKLADAAFAVAKDSDTTPVVEGAFGPVILRVSNIKPSH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T + EVK I + A++++ + + R E+ A G+S++E + + + +I + +D
Sbjct: 360 TKTLDEVKDQIRADLAANAAAQQINDVHDRFEDMRASGSSLEEAATKAGLKAIKIDGIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G+D GK+ +P K LL VF + + + Y+W + +R+R L+
Sbjct: 420 QGQDKTGKQAENLPEKANLLKSVFETEAGAE-PLPLNIGRNGYLWFDVTSIDASRERTLD 478
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV DW T + + + +K QL + G D+ L + T + R D E
Sbjct: 479 EVKDKAVSDWTTEQQKQALGAKVEQLKAKADT-GVALADLATELAIGVETKAGLRR-DTE 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
+ G + F GP + + ++ ++ KVT+ P V +++ I+ L +
Sbjct: 537 DPVLGPAAVQAAFRGPSGTIGSAVGADPMTQILLKVTDVNTQPTGDVVDQQESQITALAK 596
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
D+LD ++ L+++Y VT++ L Q+ +
Sbjct: 597 SAGDDILDQMVNQLQTKYGVTINQALAQQAI 627
>gi|209963457|ref|YP_002296372.1| peptidyl-prolyl cis-trans isomerse, putative [Rhodospirillum
centenum SW]
gi|209956923|gb|ACI97559.1| peptidyl-prolyl cis-trans isomerse, putative [Rhodospirillum
centenum SW]
Length = 622
Score = 303 bits (774), Expect = 7e-80, Method: Composition-based stats.
Identities = 134/626 (21%), Positives = 249/626 (39%), Gaps = 8/626 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR + +W+AKI ++L F +WG+ D F+ V VG ++ +
Sbjct: 1 MLQAIRSTAGSWIAKILFILLIASFAVWGIGD--FTRGLGRHVAEVGDVQITPQELDQEF 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E+ + + +G + +E+AR+ GL ++ L +V + +D GL V EI
Sbjct: 59 RDEVTRLRRVMGADLTAEQARAFGLLERTLQQMVQRTLVSLAGQDKGLMPSDAMVADEIR 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
R P+FH + +F D+ + L + G+ E+ ++ ++R ++G G L +
Sbjct: 119 RVPVFHNQLGQFDPDLMRALLRQNGMTEQGLVEQVRADMARGQLLGSVSIGAILPTTLAE 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
RF E R D I + +P A P +VL Q+ + Y APEY+ ++
Sbjct: 179 TLFRFRNEKRVADLITVPATAMPEPAAPDASVLAQYHQDRAVRYTAPEYRSLTVAKLTAE 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
I +S+ +++ Y ++ +PE R V Q V P++ A ++ G Q A
Sbjct: 239 AIAGDITVSDADIEQAYSARASEFVAPERRAVVQAVLPDEAAAKSVADAVAGGASLEQAA 298
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ D LG +++ + + +G + + + G+ + V I P
Sbjct: 299 KAAAAEAID--LGEVTRDQLLPELV--EPVFGLSQGAISAPVESTLGWHVLTVRGITPGH 354
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ + +R +A +++ E ++++ LA G +++E ++R + + VD
Sbjct: 355 ERPLAEVRDQVVADLRKERALDRLYEVANQMDDDLAGGATLEEAAQRAGAEIVRIEAVDS 414
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G G V +P Q+L F H Y V++ PA + LE
Sbjct: 415 RGTTPAGTPVQDVPALPQVLETAFALPSG-ETGHMTETDAQGYFAVRVDGVQPAALKPLE 473
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
+ V DW + A +KA++L + + R GA+ + R E
Sbjct: 474 TIRERVLADWTAEQRAAAARTKADELAAKLREGADPARLAATVPGATHARSEPFTRR-PE 532
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
+ ++F V G V +
Sbjct: 533 AAALPASLVEELFGAQPGGVAVADGREGPVAARLVEIIPAVPDAAGVKVIRDTTEATLAD 592
Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRY 626
DL+ + L+ Q+ V+V+ LI
Sbjct: 593 DLVTQYVGGLQRQFPVSVNRGLIDSL 618
>gi|315122544|ref|YP_004063033.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495946|gb|ADR52545.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 632
Score = 301 bits (769), Expect = 2e-79, Method: Composition-based stats.
Identities = 376/633 (59%), Positives = 484/633 (76%), Gaps = 3/633 (0%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLEIIRKASRTWVAKIFLVVLFVPF++WG+SDA FS SG STVVSVG QK+P S+FI W
Sbjct: 1 MLEIIRKASRTWVAKIFLVVLFVPFIVWGVSDAFFSFSGKSTVVSVGNQKIPLSAFIQIW 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
QEL +S++IGF V ERARS LDKKI ++LV+GA +DQFIED GLEA RV+ I
Sbjct: 61 TQELDALSRQIGFAVPPERARSAELDKKITEHLVAGAAIDQFIEDTGLEAPDSRVFEFIG 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P+F+GKD KFSH+VF+S+LA+EG++EKEY++ Y KM+SR+D+ MF+GG + S L +
Sbjct: 121 SQPIFYGKDGKFSHEVFLSKLAQEGVSEKEYVETYKKMISRSDIAEMFIGGDKSSRFLAE 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R Y ENR+++Y+VLN VPA+ DP+ VL +WF K+K NYRAPEYK SYI DV+
Sbjct: 181 QMMRHYSENRTIEYVVLNAHDVPAVVDPAPVVLAEWFAKFKGNYRAPEYKSFSYIALDVN 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
EKEK + ++ EL++EYEKNK +YFSPEIRTVEQLVFPNQKEA+EA +SLKKGKKFIQLA
Sbjct: 241 EKEKNVVVTESELRSEYEKNKNQYFSPEIRTVEQLVFPNQKEAEEALKSLKKGKKFIQLA 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+E+GKSLSDISLGSFSKEYIPD SLAD IF+LAK+GD+T +IHGSFGYVIAHVS IKPSF
Sbjct: 301 KEKGKSLSDISLGSFSKEYIPDPSLADPIFALAKEGDYTSLIHGSFGYVIAHVSRIKPSF 360
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T F+++KK I +++R+ KAS+ V E+YK+ ++ L+ G +M +I+ +EK DLP +++
Sbjct: 361 TTPFEQIKKSIEHKVRLAKASQVVLEEYKKAQDLLSSGKTMKDIATKEKFSFGDLPPLNY 420
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D+K + V IPYK+ LL R+F ++D L D+T+ LPDGSY+ ++KE IPARDRKLE
Sbjct: 421 LGMDMKNRPVQKIPYKDHLLSRIFNQEDALVTDNTIQLPDGSYVIFKVKEVIPARDRKLE 480
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-- 538
EVLT+VKKDWK+++ E V +KA LVL +GK+F D+ +L + + I RM
Sbjct: 481 EVLTEVKKDWKSIQQTEAVLNKAQNLVLA-CNKGKSFADMASSLRKFISVKSNITRMTKE 539
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
+E DGIS+VFSGPV MVK FPI+NG VVFKV SK+ P+ +K KFI L +M+
Sbjct: 540 SEEGILENDGISRVFSGPVGMVKSFPIKNGAEQVVFKVVRSKINPMDDKKKFILSLEKMI 599
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
KD+LDS IAYL+ QY V V+++LI +Y D K
Sbjct: 600 GKDMLDSSIAYLRQQYPVYVNESLITKYFDQNK 632
>gi|15888991|ref|NP_354672.1| peptidyl-prolyl cis-trans isomerse D [Agrobacterium tumefaciens
str. C58]
gi|15156777|gb|AAK87457.1| peptidyl-prolyl cis-trans isomerse D [Agrobacterium tumefaciens
str. C58]
Length = 630
Score = 300 bits (766), Expect = 6e-79, Method: Composition-based stats.
Identities = 189/634 (29%), Positives = 345/634 (54%), Gaps = 10/634 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R ASRT AK+ L++L V F +WG+S +L + S V++VG Q V F ++
Sbjct: 1 MLDSLRNASRTMAAKLLLLLLVVSFGVWGVSASLVTA-NSHAVMTVGDQTVSPQEFRLAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ +S++ G + +E+A++ G+D+++ L +GA LD+ + L R+ IA
Sbjct: 60 QRQVSDLSRQFGTRLTTEQAKAFGIDRQVFSQLAAGAALDELASKMNLGLSENRLANLIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + +F ++F RL G E +YI +K+ R+ +V G +L+D
Sbjct: 120 EDPAFKSVNGQFDRNLFSERLRNSGFREDDYIKERSKVAVRSQIVEAVSDGFAAPQVLVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K++ E R+VDY++L+N +P + P + VLT WFE K YRAPE+++ +Y+ +
Sbjct: 180 ALKQYRNEQRAVDYVILSNAVIPPVKAPGDDVLTPWFETNKSKYRAPEFRKFTYVKLEPS 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQL 299
+ + +++ ++ Y +K+ + + RTVEQL FP+++ A A + ++ G + Q+
Sbjct: 240 DIAEPASVTDAQIADYYNSHKDSFRTAGRRTVEQLTFPDKEMAAAAAEQIRLGNTTYDQV 299
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
++QGK+ SD++LG F+K+ IPD S+AD+ F++ K G +PV+ GSFG ++ V+ IKP
Sbjct: 300 VKDQGKTASDVTLGEFTKDTIPDQSIADAAFAIQKDGGVSPVVDGSFGPILLRVTGIKPE 359
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
T + E K+DI + A+E++ + R E+ A G+S+ + +++ + + + +D
Sbjct: 360 TTRTLDEAKEDIRKDLATAAAAEEITNVHDRYEDLRAGGSSLADAAKQLNLKPVTIDAID 419
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
AG + KG + +P L + K +P + + L Y+W +++ IPARDR L
Sbjct: 420 AAGLNEKGDAIEGLPS--PQLAQDVFKTEPGTDALPINLGREGYIWFDVEQIIPARDRTL 477
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
EV DV DW + +++KA++L K G+ + L ++ + + R
Sbjct: 478 AEVRDDVVADWTAEQQRTALAAKADELKARVEK-GETLEAVAGELSLAVEQKSGLRRTS- 535
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLT 595
E+ FG I+ VFSG +V +G S ++FKVT+ + D+ + +
Sbjct: 536 EDAIFGRQTIAAVFSGAEGVVGTAADADGSSRILFKVTSVDANAPADALANDDQQFTAIA 595
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
+ D+LD ++ L++ Y VT++ L + + G
Sbjct: 596 RAAGDDMLDQMVNRLQNDYGVTINQALADQAMVG 629
>gi|193084249|gb|ACF09911.1| peptidyl-prolyl cis-trans isomerase ppiD [uncultured marine group
III euryarchaeote KM3-28-E8]
Length = 631
Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats.
Identities = 147/632 (23%), Positives = 281/632 (44%), Gaps = 9/632 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE +R RTW K L +L + F IWG+ D +TVV VG ++ F ++
Sbjct: 1 MLEFLRNGVRTWYFKALLGLLVLSFAIWGVGDIFRPGLSGNTVVKVGNIEIGSQQFTSAL 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ +S+ +G E+AR + + +++++ LV+ A + +G+ + I
Sbjct: 61 QRQMQNLSRTLGSNFTLEQARGLQVPERVVEGLVTEALHESEANALGIAVGKKALVQRIR 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F ++ +F V+ LA G +E++++ + LSR V+G + S +L +
Sbjct: 121 SEPGFRNQEGQFDRSVYEQTLAINGFSEEQFVSRLRQELSRAQVLGSLTSEVPVSEVLTN 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + E R YI + + + I P +A L ++++ + + APEY+ +Y+
Sbjct: 181 RLYSWNAEKRVAAYIKIQHDAIANIEKPDDAALQEYYKGNESLFTAPEYRSATYVHLTGK 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ E I++S+ ++Q Y++N + + PE RTV+Q++F ++EA L +GK F +A
Sbjct: 241 DVESDIDVSDADIQKLYDQNIDAFKVPERRTVQQMIFSTEEEAKTGAAHLAEGKTFAAVA 300
Query: 301 EEQGKSLSDI--SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
++ + D LG +K ++PD G TP + G FG+ + V+ IK
Sbjct: 301 KDLLRQDEDATNILGDVTKIHLPDT--LAEAVFNLSDGQVTPPLEGPFGWYVMRVTAIKA 358
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
T EV+ DI Q+ ++ E + + L++ L G S++E +R+ +V+ + V
Sbjct: 359 PKTQQLLEVRIDIRAQLVQERSGEALYKLSNDLDDALGGGASLEEAARQVGVVAKKVTKV 418
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D K + +P + L +F D V L Y+ ++ A+ +
Sbjct: 419 DRGSNGSDEKPMNDLPPGPEFLTTLFNTPDGQE-SELVDLGVNGYLILRNTGIQAAKVKP 477
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
LE V K WK + ++ + +++ E K G+ I K++ + T+ NR
Sbjct: 478 LESVRNRAIKFWKAEQRRKQTEENSKRIL-ERIKGGEPLEVISKSIDVPIETSPPFNRHG 536
Query: 539 N-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK--VTNSKVGPVQEKDKFISYLT 595
+++F V P + G + V K V + L
Sbjct: 537 EGAANNLPRSLAAELFGVKVGGASSAPSDRGYTIGVLKEIVKAKVGANSADVKALAEQLA 596
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
Q + +DL L+ ++V + + L
Sbjct: 597 QRIGRDLEIQYNNALRQHHNVEIDQRALDNLL 628
>gi|110633989|ref|YP_674197.1| peptidyl-prolyl cis-trans isomerse D [Mesorhizobium sp. BNC1]
gi|110284973|gb|ABG63032.1| peptidyl-prolyl cis-trans isomerase D [Chelativorans sp. BNC1]
Length = 628
Score = 299 bits (763), Expect = 1e-78, Method: Composition-based stats.
Identities = 182/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RKA+ TWVAK+ LVVL V F +WG+S ++ + + V++ G V + ++
Sbjct: 1 MLDSLRKAATTWVAKLLLVVLVVSFAVWGISGSMLTGTSGD-VITAGGTSVSALDYRLAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +S++ G + E+A + G+D+++L L +GA LD+ +IGL ++ A
Sbjct: 60 DRRIAELSRQFGTRLTREQAVAFGIDEQVLSQLSAGAVLDETAREIGLGVSKDKLAELTA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F G D +F F L+R G+ ++Y+ + + R ++ G+ + LL
Sbjct: 120 SDPAFRGLDGRFDRSQFEFVLSRIGMRPEDYLKNREQAAVRQQIIDAVASGVSAPDELLR 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R+ E+R+++Y+ L V + PS+ L WFE+ KDNY APEY++I Y+ +
Sbjct: 180 SLARYRGEDRTIEYVALPRSAVEPVEPPSDEQLQTWFEERKDNYAAPEYRKIEYVKLEAE 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ IS++++++ Y++N+ +Y +PE R VEQL F + +EA A +S++ G F L
Sbjct: 240 DIADPSVISDEQVESYYQQNQAQYTTPERRQVEQLTFASAEEATAARESMRTGTTFEDLI 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
E QGK L D+SLG+ ++ IPD +AD++FSL + + V+ G+FG V+ V+ I P
Sbjct: 300 ERQGKKLQDVSLGTLTRADIPDQVIADAVFSLTEDQ-VSDVVQGTFGPVLLRVTEITPEA 358
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+VK++I Q+ + +A+ + + Y + E+ A G ++ E + R + + VD
Sbjct: 359 VTPLDQVKEEIRQQLALDEANRLLLDTYDQYEDARAGGDTLQEAAERLSLTVGTIDAVDR 418
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G G V +P LL F + + + L +++ ++ E +PARDR+
Sbjct: 419 DGNKPDGTRVEDVPNLPALLAEAFQTEVGVENA-PINLTGSGFLFYEVAEIVPARDREFS 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V +DW + + ++A L E K GK +I LG + + R ++
Sbjct: 478 EVRDRVLEDWTEAEVTSRLDARAKALQEEI-KNGKTLDEISTELGQEKMVKRGLKREASD 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS----KVGPVQEKDKFISYLTQ 596
G G++ VFS G + +F+VT D + + Q
Sbjct: 537 AD-LGQTGVAAVFSVAKGETGTVANPAGDARFIFQVTEVFEPASATAESLPDDIKTAVNQ 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ DLLD ++ L++++ VTV+ +Q+ L
Sbjct: 596 GLENDLLDQLVTRLQAEHGVTVNRTAMQQAL 626
>gi|325293071|ref|YP_004278935.1| peptidyl-prolyl cis-trans isomerase D [Agrobacterium sp. H13-3]
gi|325060924|gb|ADY64615.1| peptidyl-prolyl cis-trans isomerase D [Agrobacterium sp. H13-3]
Length = 630
Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats.
Identities = 193/634 (30%), Positives = 346/634 (54%), Gaps = 10/634 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R ASRT AK+ L++L V F +WG+S +L + S S V++VG Q V F ++
Sbjct: 1 MLDSLRNASRTMAAKLLLLLLVVSFGVWGVSASLVT-SNSHAVMTVGDQTVSPQEFRLAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ +S++ G + +E+A++ G+D+++ L +GA+LD+ + L R+ IA
Sbjct: 60 QRQVSDLSRQFGARLTTEQAKAFGIDRQVFSQLAAGASLDELASKMNLGLSEDRLANLIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + +F +F RL G+ E +YI +K+ R+ +V G + +L+D
Sbjct: 120 EDPAFKSVNGQFDRTLFTERLRNSGLREDDYIKERSKVAVRSQIVEAVSDGFKAPQVLVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K++ E RSVDY++L+N + + P + VL WFE K YRAPE+++ +Y+ +
Sbjct: 180 ALKQYRNEQRSVDYVILSNAVIAPVKAPGDDVLAPWFETNKAKYRAPEFRKFTYVKLEPS 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQL 299
+ + +++ ++ Y +K+ + + RTVEQL FP ++ A+ A + ++ G + Q+
Sbjct: 240 DIADQASVTDAQIADYYNSHKDSFRTAGRRTVEQLTFPEKEMAEAAAEQIRLGNTTYDQV 299
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
++QGK+ SD++LG F+K+ IPD S+AD+ F++ K G +PV+ GSFG VI ++ IKP
Sbjct: 300 VKDQGKTASDVTLGEFTKDTIPDQSIADAAFAVQKDGGVSPVVAGSFGPVILRITGIKPE 359
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
T + +E K+DI + A+E+V + R E+ A G+S+ + +++ + + + +D
Sbjct: 360 TTRTLEEAKEDIRKDLATAAAAEEVTNVHDRYEDLRAGGSSLADAAKQLNLKPVTIDAID 419
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
AG D KG + +P L + K +P ++ + L Y+W + + IPARDR L
Sbjct: 420 AAGLDEKGDAIQDLPS--PQLAQEVFKTEPGTEALPINLGREGYIWFDVDQIIPARDRTL 477
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
EV DV DW + +++KA++L K G+ + LG ++ + + R
Sbjct: 478 AEVRDDVVADWTAEQQRTALATKADELKARVEK-GETLAAVAGELGLAVEQKSGLRRTS- 535
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLT 595
E+ FG I+ VFSG M +G S ++FKVT + D+ + +
Sbjct: 536 EDAIFGRQTITAVFSGAEGMTGTAADADGSSRILFKVTAVDTNAPADALANDDQQFAAIA 595
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
+ D+LD ++ L++ Y VT++ L + + G
Sbjct: 596 RAAGDDMLDQMVNRLQNDYGVTINQALADQAMVG 629
>gi|227822015|ref|YP_002825986.1| peptidyl-prolyl cis-trans isomerse D [Sinorhizobium fredii NGR234]
gi|227341015|gb|ACP25233.1| peptidyl-prolyl cis-trans isomerse D [Sinorhizobium fredii NGR234]
Length = 630
Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats.
Identities = 191/631 (30%), Positives = 335/631 (53%), Gaps = 8/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A++T + K L +L + F++WG L S VV+VG KV S + ++
Sbjct: 1 MLDSLRNAAQTRIVKGLLAILILSFMVWG-GQTLMVTGTSDAVVTVGDVKVSTSDYRLAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++L ++S+++G + ++AR+ G++ ++ LV+GA LDQ ED+ L R+ I
Sbjct: 60 ERQLSLLSRQLGTPLTRQQARAFGVEAQVYSQLVAGAALDQLAEDMNLGLSEDRLARLIG 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FHG + +F F S L G+ E++YI + +++ R+ +V G +L+D
Sbjct: 120 EDPAFHGANGQFDRMTFSSVLRNAGLTEQDYIKNRSQVAVRSQIVDALSDGFAAPAILVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
++ E R++DY++L+N ++ A+ P + VL WFE +K NYRAPEY++ SYI +
Sbjct: 180 AVGKYRHETRTIDYLLLSNANIDAVKAPGDDVLAPWFESHKANYRAPEYRKFSYIKLEPE 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++++EL+A+YEK KE + + RT+EQL FP+++ AD L G F L
Sbjct: 240 DLVVNDAVTDEELRADYEKRKESFRTAATRTIEQLAFPSREAADAGAAKLSAGTSFDDLV 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ +GKS +D+ LG F+KE +PD A++ F++A G TPV+ G+FG VI V+NI+
Sbjct: 300 KAEGKSAADVLLGDFTKERMPDQKAAEAAFAVASDGGVTPVVEGAFGPVILRVTNIRQET 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
SF EVK+++ + ++ A +++ + ++E+ A G ++ E++ + K+ + +D
Sbjct: 360 VRSFDEVKEELRKDIALSVARDQLVGLHDKIEDERAAGATVKEVADQLKLKLATVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
GKD G +V +P + LL VF + L V + Y W ++E IPARDR L+
Sbjct: 420 TGKDQNGDDVTGLPEQRALLQDVFKAEVGLET-LAVHIGRDGYAWFDLEEVIPARDRTLD 478
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV +V DW + + + + K+G DI LG + T ++R +
Sbjct: 479 EVRDEVAADWTAEQ-QRVALAAKAAELKDRVKKGAKLADIAGELGLVVETKTGLSR-STQ 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
+ I+ F GP V ++ +VT + + I + +
Sbjct: 537 DAALSEAAIAAAFGGPNGHVANAAGMGSEGQILMQVTAVDDSAPANALDNDSRQIEAIAR 596
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
D+LD ++A L+S Y V+++ L ++ L
Sbjct: 597 ASGDDILDQMVATLQSVYGVSINQTLAEQAL 627
>gi|182678431|ref|YP_001832577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182634314|gb|ACB95088.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 640
Score = 293 bits (748), Expect = 6e-77, Method: Composition-based stats.
Identities = 154/644 (23%), Positives = 308/644 (47%), Gaps = 22/644 (3%)
Query: 1 MLEIIRKASRTWV----AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
MLE +R A+R W+ + + ++ + F+IWG+ D +F G++T+ VG ++ ++
Sbjct: 1 MLEAMRVATRGWIGRSLMTLVMGLIILSFIIWGVGD-MFRNLGANTLAKVGDTEITTQAY 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++ L + ++ + E AR +GLD++IL L+ ATL+Q + +GL +
Sbjct: 60 REAYSTILQRLQRQARRAITHEEARMLGLDRQILARLIGEATLNQEADKLGLALADSEIA 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
IA+ LF G + F F + L G+ EK ++ ++L R + V G+
Sbjct: 120 RIIAKDELFKGANGAFDRQRFEALLRDNGMTEKTFVREQHELLLRHMITDAVVTGLSVPK 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
++L+ F E R VD +L V IA P+ L+++F Y E +++ +
Sbjct: 180 IMLEMIHAFQTEARDVDTFLLPASSVGEIAAPTEDELSKYFADRAQAYATQERRKLLILS 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
D I+ +++Q Y+ K E++ PE R +EQ+ FP+ A +A Q L +G+
Sbjct: 240 LDPTTLAATQTIAPEDVQKLYDSVKAERFSVPEKRQIEQISFPDLATAGKARQRLDQGEN 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F L +Q S D LG+ ++ + D +A++ F+L + G + I +FG + +
Sbjct: 300 FEALLADQHISAKDADLGTLARSDLIDQKIAEAAFALPE-GAVSQPIQDAFGAKLLRIVK 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
I P+ F V+ + ++ KA +++ + ++E+ A G ++ E+++ + + +
Sbjct: 359 IIPASVQPFASVEAGLKQELATAKARQEITGLHDKIEDLRASGKNLSEVAQSLGLKTQLI 418
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
VD G++ +G +A +P LL F D + D T+ P G ++W +++ AR
Sbjct: 419 ESVDAHGQNAQGAPIADLPNGPALLKAAFASDVGVDND-TLTTPQGGFVWFEVQGVDKAR 477
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG-ASLLTTNQI 534
R LEE ++V+ W+ +T +++ A +L+ + GK+ D+ ++ G + +
Sbjct: 478 RRTLEEARSEVEAAWRQDETNRKLALAAAELIEQID-GGKSIADVARDHGNLEVRHVEGV 536
Query: 535 NRMD------NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
R D K + ++Q+F+ V V +G ++F+V ++KV P
Sbjct: 537 TRADVQPTGNTPGKGLPPNVVTQIFNVGVHGVGSAADASGR--LIFQVQDAKVPPFDPAA 594
Query: 589 KFISYLTQM----MNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
++ + + + +D+L +A L+ + V+ + +
Sbjct: 595 PALTAIAKEADGGIKEDVLAQYVAKLQKDFGTKVNLQALGSITN 638
>gi|90419613|ref|ZP_01227523.1| peptidyl-prolyl cis-trans isomerase protein [Aurantimonas
manganoxydans SI85-9A1]
gi|90336550|gb|EAS50291.1| peptidyl-prolyl cis-trans isomerase protein [Aurantimonas
manganoxydans SI85-9A1]
Length = 629
Score = 293 bits (748), Expect = 6e-77, Method: Composition-based stats.
Identities = 173/629 (27%), Positives = 303/629 (48%), Gaps = 8/629 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML +R + W AKI L +L + F +WG+ D +F ++ V++ G +V + ++
Sbjct: 1 MLNTLRGSISGWTAKILLGLLVLSFAVWGIGD-VFRGGVANAVLTAGETEVSLQDYALAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ ++Q+IG +E A G+ + ++ LV+GA LD+ I L R+ IA
Sbjct: 60 NRAQSRLAQQIGRRPTAEEAEMFGVGQSVISQLVAGAVLDEQGRRIDLGLSQDRLAQVIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F FS F + L I+E +YI R+ +V G+ +
Sbjct: 120 EDPTFQDASGNFSRAQFQNALYNARISETDYIRGQENQAVRSQIVDAVSEGIAIPDAFST 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E R+++Y+ L +P +ADPS+ VLT +F++ + Y APEY+ ++Y +
Sbjct: 180 ALGLYNGERRTIEYVTLTPATIPPVADPSDEVLTTYFQENIETYAAPEYRSVAYAVLTPE 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
I+++ + A+YE+ KE+Y + E R V+Q+ FP++ A L+ G F +A
Sbjct: 240 AMADPTTITDEAVAADYEQYKERYTTAEQRRVQQIAFPDEAAAQAGKAKLEAGTSFADVA 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
E G+S +DI LG ++ IPD ++A++ FSLA+ GD + V+ G+FG V+ V+ I+P
Sbjct: 300 SEAGRSPTDIDLGLVTRSQIPDATVAEAAFSLAE-GDVSDVVSGAFGPVLLQVTEIQPET 358
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+ +EV +I + + + AS+ Y E+ A G + E ++ + +P VD
Sbjct: 359 VQTLEEVSDEIRSALALVAASDTANSAYNAFEDARAGGATFAEGAQSAGLTVQTIPAVDR 418
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G G+ VA P ++ L VF + L + Y++ + PARDR L+
Sbjct: 419 EGNGPDGQPVAEQPSAQEFLPGVFETEPGLDNV-PINFQSNGYVFYDVISIDPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V DWK +T +++ +A Q+ E + G++ D GA T ++R
Sbjct: 478 EVRDRVLADWKAAETDRQLAERAEQMKTEL-QAGRSMADAAAAAGAEARTAAAVSRQSGV 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQM 597
++ G G++ FSG V S +V +V S +T M
Sbjct: 537 SE-LGQAGVNAAFSGGTGTVATAAGREAGSQIVLRVVEVAPPADPAANVAANERSQMTGM 595
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ D+L++ ++ L++ ++ VH I+R
Sbjct: 596 LENDILETYVSLLQNDTAIAVHPAGIERA 624
>gi|306841864|ref|ZP_07474544.1| rotamase family protein [Brucella sp. BO2]
gi|306287994|gb|EFM59396.1| rotamase family protein [Brucella sp. BO2]
Length = 628
Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats.
Identities = 181/631 (28%), Positives = 321/631 (50%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEVHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q +K G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIKAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + + G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRVEEL-KKRLEGGTTLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT P + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I L
Sbjct: 596 ALADDVLQQLVGELQKQYPVKVNQAVINSAL 626
>gi|300022969|ref|YP_003755580.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
denitrificans ATCC 51888]
gi|299524790|gb|ADJ23259.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
denitrificans ATCC 51888]
Length = 628
Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats.
Identities = 148/635 (23%), Positives = 294/635 (46%), Gaps = 12/635 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R+ ++T VAK+ +L V F IWG++D +F G V VG ++ F S+
Sbjct: 1 MLDAMRRGAQTPVAKLLFGLLCVSFAIWGVAD-VFQGWGRGFVAKVGHTEISAEEFRRSY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ EL IS++ +++E+ + GLD+++L +++GA ++ + +GL + I
Sbjct: 60 QNELDRISRQSNQRLSAEQGHAFGLDRQVLAQMIAGAAIEAHADQLGLAISDKTLAEGIQ 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F D KF+ F L + G++E+ +++ K R +V + G LLD
Sbjct: 120 ADPNFQ-TDGKFNRQGFEGLLQQIGMSEQGFLNLRRKDELRGAIVSALIKGQTVPKPLLD 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + E R ++++ ++ V +A+P A L + +E K Y PEY+++ ++
Sbjct: 179 EIHAYNQEKRVLEWVKIDPAAV-TVAEPDEATLKKRYEDDKAKYMTPEYRKVQVLMLTPD 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF-IQL 299
+ +K I I++DE+ YE +K+ + +PE R V+Q+ F ++ A+ A ++L+ G K +
Sbjct: 238 DLKKSITITDDEIAKAYEADKDSFNTPEQRRVQQIAFKDRATAETALKALRDGTKSLADV 297
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
A+E G +D+ LG +K+ + D +AD + +K ++ VI G F V+ V+ I+P
Sbjct: 298 AKETGAKDTDVDLGLITKKSLIDPKVAD-VAFSLEKDKYSDVIDGRFATVVVRVTQIEPG 356
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
T + +VK+ + +++ K ++ +E+ G ++ E++ + ++ ++P D
Sbjct: 357 TTKTLADVKEQVRDKLANDKVHGNLQSKRDDVEDARLAGKTLKEVADQLQLTYKEIPATD 416
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
G GK V ++ R F D D + L + Y WV + + + +
Sbjct: 417 VTGLGPDGKPVLETADIRKITARAFAPDT--GDDSAIDLTNDGYAWVNVLSTDAPKQKAY 474
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
+EV VK+D+ + + + A +L + G+ I + T I R
Sbjct: 475 DEVKDAVKQDYMSSEHHRLLDELAKKL-TDKVNAGEPIASIEAEAKGKVEKTEPITR-KT 532
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV---QEKDKFISYLTQ 596
++Q F+ P + + +VF+V E D+ L
Sbjct: 533 IPPSISQSMVAQAFALAKGKAGHGPSSDNTTEIVFRVAEVTPAAALTLTETDELTRRLED 592
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ L LK ++ +V+ ++ + +
Sbjct: 593 ELANQSLTEYTEALKKRFGASVNQAELKSAVGVTQ 627
>gi|307942204|ref|ZP_07657555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseibium sp.
TrichSKD4]
gi|307774490|gb|EFO33700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseibium sp.
TrichSKD4]
Length = 635
Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats.
Identities = 165/632 (26%), Positives = 298/632 (47%), Gaps = 10/632 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RK + TWVAKIF+ +L F +WG++D +FS G +TV VG ++ +F ++
Sbjct: 1 MLDALRKGAGTWVAKIFIALLVFSFAVWGVAD-VFSGFGQNTVAKVGETEIATVAFDRAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +++G +++ G+ ++ L +++ A L++ ++ L + G I
Sbjct: 60 RQDLNRFGRQLGRPLSTTEGAQFGIPQQTLGRMIAEAALNETGRELNLGISDDHLAGIIQ 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + + L G++E EY+ + R + G M L+
Sbjct: 120 NDPNFRRAGGGYDRALLAQVLRNIGMSEDEYVIQQREFAERQQIAQAVSGDMPAPTAYLE 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E R + IVL V I DP A L +FE+ K +RAPEY++++ +
Sbjct: 180 VLNAYENETRDISLIVLTAEQVGEIEDPDQAALEAYFEENKVAFRAPEYRKVTLLELTPE 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +IS+D EYE++K +YF E R Q+VF + EA EA Q L G F +L
Sbjct: 240 ALARPEDISDDMALDEYERDKSRYFEAEKRRARQIVFQDPAEAAEASQRLSDGTTFEELM 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
E+ S +D++LG ++E D ++ ++ G + + G F I +V I+P
Sbjct: 300 AERNLSDNDVNLGLMAQEDFLDTAVGEAA-FSLSVGGTSEPVDGRFSTAIVNVLEIQPEA 358
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T F +VK DI + +A +V + +E+ A G + E++ R ++ + D
Sbjct: 359 TQPFDDVKADIKALLAAEQAEREVLDLLDEIEDARAGGDLLAEVAERLQLTTTMPDAFDH 418
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
AGK + + ++P +L+ VF D + D V L + ++W ++ E IPAR+R L+
Sbjct: 419 AGKGLD-ENSVSLPDAVELISGVFSSDVGVEND-PVQLGNRGFLWYEVSEVIPARERTLD 476
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + A+ + + A+ E K G+ + + + G ++ T + + R
Sbjct: 477 EVTQKVIDAWKEAELAKRLENMADDY-AERVKNGETMQALAETAGLTVQTNDGVKRT-AT 534
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
+ +G++Q+F+GP +V + + VV KV + Q L
Sbjct: 535 SLAVSRNGLTQLFAGPEGLVAAVEAADSAARVVAKVNKVNIPAFFAEEQGIQALGMQLAN 594
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
M LL ++ ++ + V ++D + L
Sbjct: 595 QMQDSLLSQYVSGIEERAGVEINDGAVALVLG 626
>gi|306844003|ref|ZP_07476598.1| rotamase family protein [Brucella sp. BO1]
gi|306275758|gb|EFM57482.1| rotamase family protein [Brucella sp. BO1]
Length = 628
Score = 290 bits (740), Expect = 6e-76, Method: Composition-based stats.
Identities = 181/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ GSFG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGSFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT P + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I L
Sbjct: 596 ALADDVLQQLVGELQKQYPVKVNQAVINSAL 626
>gi|319783646|ref|YP_004143122.1| peptidyl-prolyl cis-trans isomerase D [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169534|gb|ADV13072.1| peptidyl-prolyl cis-trans isomerase D [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 630
Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats.
Identities = 179/631 (28%), Positives = 317/631 (50%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59
ML I+R A+ TWVAK LV+L + FL+WG+S L +G +V++ G KV + + +
Sbjct: 1 MLGILRSAAGTWVAKGLLVLLVLSFLVWGVSGRLMGGLAGHDSVITAGGTKVSINEYRLA 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ ++L ++SQ+ G ++ E+A+++G+D ++L LVSGA LD+ +GL R+
Sbjct: 61 YDRQLAVMSQQFGQRLSHEQAKALGVDNQVLAQLVSGAVLDEQARKLGLGLSKDRLAELT 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F G +F F L + G+ ++Y+ + ++ R +V G++ +
Sbjct: 121 REDPAFKGPGGQFDRRTFEYMLQQIGMRPEDYLKNRAQVAVRQQIVEAVSDGLKAPDTFF 180
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ E+R++DY+ L V IA PS++VL+ +FE K Y APEY++ SY+ +
Sbjct: 181 KAVALYRGEDRTIDYLTLPKALVEPIAAPSDSVLSAYFEANKKTYAAPEYRKFSYVRLEP 240
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ +++ ++ +Y KNK +Y +PE+RT+EQLVF A A SLK G F +L
Sbjct: 241 VDIMDPTAVTDQQVSDDYNKNKARYTTPELRTIEQLVFKTPDAAKAALDSLKAGATFDKL 300
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+GK+ +D LG+ +K+ I D ++AD+ F+L + V+ G+FG V+ V+ IKP
Sbjct: 301 VTAEGKTPADTLLGTLAKDKIADKAVADAAFALNANE-VSQVVQGAFGPVLLRVTEIKPE 359
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
EV I + + +AS + + ++ A G+S+ + + + K+ + + +D
Sbjct: 360 VVKPLAEVSDQIRKDLALGEASRILLDVRDNYDDTRAAGSSLADAAAKLKLKVVTIDAID 419
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+G V +P +L+ VF + D + D +++ ++ PARDR L
Sbjct: 420 RSGLRPDASIVKDLPQSPELIKAVFDAEPNTEND-ALTTADNGFVFYEVASITPARDRTL 478
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
+EV V DW +T++ +++KA++L + K G I L T + R
Sbjct: 479 DEVRQKVVADWTAAETSKRLAAKADEL-EKRLKAGATLDVIASELKLEKQTKRGVKRE-A 536
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK----DKFISYLT 595
++ FG +G + +F P G +++KV + D T
Sbjct: 537 DDVDFGKEGAAAMFGVGEGGTGLIPSPTGDGQILYKVAEVFEPAGADASSVPDDAQKSFT 596
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
M+ DLLD ++A L++QY V V + +
Sbjct: 597 SGMSDDLLDQLVAQLQTQYDVRVDQAAVAQA 627
>gi|254719202|ref|ZP_05181013.1| rotamase family protein [Brucella sp. 83/13]
gi|265984198|ref|ZP_06096933.1| rotamase [Brucella sp. 83/13]
gi|306837950|ref|ZP_07470808.1| rotamase family protein [Brucella sp. NF 2653]
gi|264662790|gb|EEZ33051.1| rotamase [Brucella sp. 83/13]
gi|306406874|gb|EFM63095.1| rotamase family protein [Brucella sp. NF 2653]
Length = 628
Score = 289 bits (737), Expect = 1e-75, Method: Composition-based stats.
Identities = 180/631 (28%), Positives = 321/631 (50%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++ ++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAISVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + I PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADTIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAARQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ GSFG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGSFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + VD
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAVDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT P + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I L
Sbjct: 596 ALADDVLQQLVGELQKQYPVKVNQAVINSAL 626
>gi|114707419|ref|ZP_01440315.1| peptidyl-prolyl cis-trans isomerase D [Fulvimarina pelagi HTCC2506]
gi|114536978|gb|EAU40106.1| peptidyl-prolyl cis-trans isomerase D [Fulvimarina pelagi HTCC2506]
Length = 629
Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats.
Identities = 164/629 (26%), Positives = 285/629 (45%), Gaps = 8/629 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML +RKA+ W AKI L +L + F +WG+ D +F + V+SVG VP + + ++
Sbjct: 1 MLNSLRKATTGWTAKILLGLLVISFAVWGIGD-VFRSGNQNAVLSVGETDVPLAEYALTY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
Q I++++G + E A + G+D+ +L LVSGA L + +IGL R+ IA
Sbjct: 60 NQASSGIARQLGRPLTPEEAATFGIDQAVLSQLVSGAVLTEQARNIGLGISDERLARLIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F FS F + L + + E +YI+ RT +V G+ +
Sbjct: 120 DDPSFQDASGNFSRAQFRNLLNQARLRESDYIEFQEDAAMRTQIVDAVSNGITLPKAYEE 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
F E R+V YI + + + +PS+ L +FE+ K +Y APEY+ ++
Sbjct: 180 ALGLFNGERRNVSYISVGPGALESEPEPSDEALQAYFEENKQDYAAPEYRGLAVARLTRE 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ I+++++ A+YE+ + +Y E R V Q+VF ++ A EA + L G F +A
Sbjct: 240 TIADESAITDEQVAADYEQYQSRYGEAERRQVSQIVFGDEAAATEAAEKLANGATFENVA 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
GK+ +D ++G ++E IPD S+ D+ + G + VI G FG I VS I+ +
Sbjct: 300 RAAGKNPADTAIGLVTREDIPDPSIRDAA-FALESGQTSDVIDGRFGPTIVRVSEIQEAS 358
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+EV DI + + AS+ + Y+ E+ A G + +E ++ + VD
Sbjct: 359 VTPLEEVAGDIRRDLALNNASDTLNAAYQTYEDARASGATFEEATQEAGLKVETYEAVDS 418
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G++ G+ + I LL F + + D Y++ + + PARDR L+
Sbjct: 419 QGRNPSGEAIEGISGNGDLLEEAFQTEPGFDNI-PITTEDNGYLFFDVTDIQPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V DW +T + + + E ++ GK+ +I + G + + I R
Sbjct: 478 EVRQQVVDDWTRDETLR-LVEERAAALAEEARGGKSLENIAEENGLEVASAVGITRQSG- 535
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ---M 597
G F+ V L VV K+ + + + Q
Sbjct: 536 AGEIGAQASQAAFASGQGSVAAAKGRGELEQVVLKIDEVAPPAAPLDNVNRTQIGQVQTG 595
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ DL+ S + ++ +Y + ++ N I+
Sbjct: 596 LTNDLVQSYVTRVQGEYPLQIYPNGIENA 624
>gi|163843404|ref|YP_001627808.1| rotamase family protein [Brucella suis ATCC 23445]
gi|163674127|gb|ABY38238.1| rotamase family protein [Brucella suis ATCC 23445]
Length = 628
Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats.
Identities = 179/631 (28%), Positives = 321/631 (50%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G + +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATTADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT P + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626
>gi|254706677|ref|ZP_05168505.1| rotamase family protein [Brucella pinnipedialis M163/99/10]
gi|261314138|ref|ZP_05953335.1| rotamase [Brucella pinnipedialis M163/99/10]
gi|261303164|gb|EEY06661.1| rotamase [Brucella pinnipedialis M163/99/10]
Length = 628
Score = 288 bits (735), Expect = 2e-75, Method: Composition-based stats.
Identities = 180/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNPRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT P + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626
>gi|23502017|ref|NP_698144.1| rotamase family protein [Brucella suis 1330]
gi|161619091|ref|YP_001592978.1| rotamase family protein [Brucella canis ATCC 23365]
gi|254704427|ref|ZP_05166255.1| rotamase family protein [Brucella suis bv. 3 str. 686]
gi|254710215|ref|ZP_05172026.1| rotamase family protein [Brucella pinnipedialis B2/94]
gi|256031709|ref|ZP_05445323.1| rotamase family protein [Brucella pinnipedialis M292/94/1]
gi|256369565|ref|YP_003107075.1| rotamase family protein [Brucella microti CCM 4915]
gi|260566326|ref|ZP_05836796.1| peptidyl-prolyl cis-trans isomerase D [Brucella suis bv. 4 str. 40]
gi|261317773|ref|ZP_05956970.1| rotamase [Brucella pinnipedialis B2/94]
gi|261755104|ref|ZP_05998813.1| rotamase [Brucella suis bv. 3 str. 686]
gi|265988804|ref|ZP_06101361.1| rotamase [Brucella pinnipedialis M292/94/1]
gi|23347969|gb|AAN30059.1| rotamase family protein [Brucella suis 1330]
gi|161335902|gb|ABX62207.1| rotamase family protein [Brucella canis ATCC 23365]
gi|255999727|gb|ACU48126.1| rotamase family protein [Brucella microti CCM 4915]
gi|260155844|gb|EEW90924.1| peptidyl-prolyl cis-trans isomerase D [Brucella suis bv. 4 str. 40]
gi|261296996|gb|EEY00493.1| rotamase [Brucella pinnipedialis B2/94]
gi|261744857|gb|EEY32783.1| rotamase [Brucella suis bv. 3 str. 686]
gi|264661001|gb|EEZ31262.1| rotamase [Brucella pinnipedialis M292/94/1]
Length = 628
Score = 288 bits (735), Expect = 2e-75, Method: Composition-based stats.
Identities = 180/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT P + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626
>gi|254714212|ref|ZP_05176023.1| rotamase family protein [Brucella ceti M644/93/1]
gi|254717648|ref|ZP_05179459.1| rotamase family protein [Brucella ceti M13/05/1]
gi|261219487|ref|ZP_05933768.1| rotamase [Brucella ceti M13/05/1]
gi|261321982|ref|ZP_05961179.1| rotamase [Brucella ceti M644/93/1]
gi|260924576|gb|EEX91144.1| rotamase [Brucella ceti M13/05/1]
gi|261294672|gb|EEX98168.1| rotamase [Brucella ceti M644/93/1]
Length = 628
Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats.
Identities = 179/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G L++ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLNEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G+FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGNFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT P + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626
>gi|294852479|ref|ZP_06793152.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. NVSL 07-0026]
gi|294821068|gb|EFG38067.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. NVSL 07-0026]
Length = 628
Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats.
Identities = 179/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + I ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSSIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAKKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT P + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626
>gi|256061222|ref|ZP_05451373.1| rotamase family protein [Brucella neotomae 5K33]
gi|261325229|ref|ZP_05964426.1| rotamase [Brucella neotomae 5K33]
gi|261301209|gb|EEY04706.1| rotamase [Brucella neotomae 5K33]
Length = 628
Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats.
Identities = 181/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A++TW+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQTWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQKRSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT P + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626
>gi|148560591|ref|YP_001259060.1| rotamase family protein [Brucella ovis ATCC 25840]
gi|148371848|gb|ABQ61827.1| rotamase family protein [Brucella ovis ATCC 25840]
Length = 628
Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats.
Identities = 181/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
S EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKSLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT P + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626
>gi|225627608|ref|ZP_03785645.1| rotamase family protein [Brucella ceti str. Cudo]
gi|256159868|ref|ZP_05457597.1| rotamase family protein [Brucella ceti M490/95/1]
gi|256255110|ref|ZP_05460646.1| rotamase family protein [Brucella ceti B1/94]
gi|260168841|ref|ZP_05755652.1| rotamase family protein [Brucella sp. F5/99]
gi|261222305|ref|ZP_05936586.1| rotamase [Brucella ceti B1/94]
gi|261758329|ref|ZP_06002038.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. F5/99]
gi|265998269|ref|ZP_06110826.1| rotamase [Brucella ceti M490/95/1]
gi|225617613|gb|EEH14658.1| rotamase family protein [Brucella ceti str. Cudo]
gi|260920889|gb|EEX87542.1| rotamase [Brucella ceti B1/94]
gi|261738313|gb|EEY26309.1| peptidyl-prolyl cis-trans isomerase D [Brucella sp. F5/99]
gi|262552737|gb|EEZ08727.1| rotamase [Brucella ceti M490/95/1]
Length = 628
Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats.
Identities = 181/631 (28%), Positives = 323/631 (51%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT GP + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTESAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626
>gi|85716537|ref|ZP_01047508.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
Nb-311A]
gi|85696726|gb|EAQ34613.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
Nb-311A]
Length = 582
Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats.
Identities = 153/587 (26%), Positives = 286/587 (48%), Gaps = 5/587 (0%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
I + +L V F IWG++D +F G S + +VG ++ F + L I ++ G
Sbjct: 1 MTIVMGLLIVAFGIWGIAD-IFQGFGQSALATVGNTEISTEQFRQIYTDRLQQIGRQFGR 59
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ ++ R++G+D++IL +++ A LD+ GLE + +I P F G + F
Sbjct: 60 TLPPDQVRALGIDRQILQQVIAEAALDEDARRKGLEVSDKEISRQIMSDPNFKGANGAFD 119
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
F + + G E+ Y+ + R +VG G+ PS LL+ RF E R++D
Sbjct: 120 PARFAGLIRQLGYTEQRYVTEQRNLALRRQIVGTVTAGVEPSTKLLEALNRFQNEQRTID 179
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
Y+ L +I P+ A L+ +F+ +K +RAPEY++I++++ E K +S+D+
Sbjct: 180 YVKLGAAQAGSIDPPTEAQLSGYFDAHKVQFRAPEYRKIAFVVLTPEEVAKWTTVSDDDA 239
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
+ YE+ K+K +PE R + Q++FP+ +A A + + G F +A+E+ + SDI LG
Sbjct: 240 KKVYEQRKDKLSTPERRKIWQIIFPSVADAQAAREKIASGASFDDIAKERNLATSDIDLG 299
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ S+ I D ++A++ K D + I G FG + VS I+P ++ V + +
Sbjct: 300 TISRPEIVDPAVAEAA-FSLKTDDVSQPIQGKFGVALVKVSKIEPGNQPTYDSVATKLKH 358
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ + + +V + ++E+ G S+ E +++ + ++ + D +G+ GK V I
Sbjct: 359 DIAVDRGRAEVNNLHNKMEDERGGGASVVEAAKKVGLSAVTIEATDRSGRAPDGKPVTEI 418
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
P L+ + F D + D T+ L + ++W + P+RDR L EV V+ W+
Sbjct: 419 PQGVDLIAQAFASDVGVDND-TLQLGNNGFVWFDVLGVTPSRDRTLAEVKDKVEAGWRKD 477
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ + + +KA +V + GK + +LG + + + I R D ++ VF
Sbjct: 478 QISGRLMTKATDIVRNLEQGGK-IAEESSSLGLKVESASAIKR-DATTGELPAAVVAAVF 535
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
P + + VF+VT+ KV P+ + L + + +
Sbjct: 536 RVVKGAAGQAPGADNDEWFVFRVTDVKVPPLDLASDEMKKLREGIQR 582
>gi|17987128|ref|NP_539762.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1
str. 16M]
gi|225852638|ref|YP_002732871.1| rotamase family protein [Brucella melitensis ATCC 23457]
gi|256044795|ref|ZP_05447699.1| rotamase family protein [Brucella melitensis bv. 1 str. Rev.1]
gi|256113701|ref|ZP_05454505.1| rotamase family protein [Brucella melitensis bv. 3 str. Ether]
gi|256263869|ref|ZP_05466401.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 2
str. 63/9]
gi|260565602|ref|ZP_05836086.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1
str. 16M]
gi|265991219|ref|ZP_06103776.1| rotamase [Brucella melitensis bv. 1 str. Rev.1]
gi|265995055|ref|ZP_06107612.1| rotamase [Brucella melitensis bv. 3 str. Ether]
gi|17982791|gb|AAL52026.1| peptidyl-prolyl cis-trans isomerase d [Brucella melitensis bv. 1
str. 16M]
gi|225641003|gb|ACO00917.1| rotamase family protein [Brucella melitensis ATCC 23457]
gi|260151670|gb|EEW86764.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 1
str. 16M]
gi|262766168|gb|EEZ11957.1| rotamase [Brucella melitensis bv. 3 str. Ether]
gi|263002003|gb|EEZ14578.1| rotamase [Brucella melitensis bv. 1 str. Rev.1]
gi|263094000|gb|EEZ17934.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis bv. 2
str. 63/9]
gi|326409157|gb|ADZ66222.1| rotamase family protein [Brucella melitensis M28]
gi|326538867|gb|ADZ87082.1| rotamase family protein [Brucella melitensis M5-90]
Length = 628
Score = 287 bits (732), Expect = 4e-75, Method: Composition-based stats.
Identities = 179/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +P+ RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPKTRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT GP + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAF 626
>gi|62290052|ref|YP_221845.1| rotamase family protein [Brucella abortus bv. 1 str. 9-941]
gi|82699979|ref|YP_414553.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis biovar
Abortus 2308]
gi|189024292|ref|YP_001935060.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus S19]
gi|237815561|ref|ZP_04594558.1| rotamase family protein [Brucella abortus str. 2308 A]
gi|254689364|ref|ZP_05152618.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 6 str.
870]
gi|254697497|ref|ZP_05159325.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 2 str.
86/8/59]
gi|254730394|ref|ZP_05188972.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 4 str.
292]
gi|256257610|ref|ZP_05463146.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 9 str.
C68]
gi|260546604|ref|ZP_05822343.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus NCTC 8038]
gi|260754881|ref|ZP_05867229.1| rotamase [Brucella abortus bv. 6 str. 870]
gi|260758098|ref|ZP_05870446.1| rotamase [Brucella abortus bv. 4 str. 292]
gi|260761922|ref|ZP_05874265.1| rotamase [Brucella abortus bv. 2 str. 86/8/59]
gi|260883893|ref|ZP_05895507.1| rotamase [Brucella abortus bv. 9 str. C68]
gi|297248452|ref|ZP_06932170.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 5 str.
B3196]
gi|62196184|gb|AAX74484.1| rotamase family protein [Brucella abortus bv. 1 str. 9-941]
gi|82616080|emb|CAJ11118.1| peptidyl-prolyl cis-trans isomerase D [Brucella melitensis biovar
Abortus 2308]
gi|189019864|gb|ACD72586.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus S19]
gi|237788859|gb|EEP63070.1| rotamase family protein [Brucella abortus str. 2308 A]
gi|260095654|gb|EEW79531.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus NCTC 8038]
gi|260668416|gb|EEX55356.1| rotamase [Brucella abortus bv. 4 str. 292]
gi|260672354|gb|EEX59175.1| rotamase [Brucella abortus bv. 2 str. 86/8/59]
gi|260674989|gb|EEX61810.1| rotamase [Brucella abortus bv. 6 str. 870]
gi|260873421|gb|EEX80490.1| rotamase [Brucella abortus bv. 9 str. C68]
gi|297175621|gb|EFH34968.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 5 str.
B3196]
Length = 628
Score = 287 bits (732), Expect = 5e-75, Method: Composition-based stats.
Identities = 180/631 (28%), Positives = 322/631 (51%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT GP + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAF 626
>gi|288958078|ref|YP_003448419.1| peptidyl-prolyl cis-trans isomerase D [Azospirillum sp. B510]
gi|288910386|dbj|BAI71875.1| peptidyl-prolyl cis-trans isomerase D [Azospirillum sp. B510]
Length = 626
Score = 286 bits (731), Expect = 7e-75, Method: Composition-based stats.
Identities = 146/632 (23%), Positives = 283/632 (44%), Gaps = 14/632 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR + +WV KI V+L + F IWG+ D +F S +TV VG+ ++ + +
Sbjct: 1 MLQFIRNFAGSWVVKILFVLLILSFGIWGIGD-VFRSSTPTTVAEVGKVEIGQQALDQEF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ + +G + +++A+ GL ++ L +L+ D D+G+ V IA
Sbjct: 60 RRQMERLRPMLGGNLTTDQAKRFGLLEQSLQSLIQRTLFDLAATDMGIAVGPEVVRLRIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + KF ++F S L + E Y+ + +R V G G+ P L+
Sbjct: 120 DEPAFRNQQGKFDPNIFRSVLRNNQLTEDGYVAMIQRETARQLVAGAVSAGLAPPQPLVQ 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
RF E R + + L N + + P +A + Q +E ++ + APEY+ ++
Sbjct: 180 DLYRFRGEKRVAEVVTLPNASIGDVGAPDDAAIKQAYEDHQVRFTAPEYRALTVARLSPD 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
K I+I + +L+ YE+ ++ +PE RTV Q+V + + + K K + A
Sbjct: 240 ALAKDIKIDDAQLRKAYEERANEFGAPEKRTV-QMVVVDDEAKAKRIAEAAKAKGLAEAA 298
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+E + +SL + K +P + D+ + G + I + G+ + V+ + P+
Sbjct: 299 KE--TGVEPVSLDNIGKADLP--EIGDAA-FALEPGKPSDAIKSALGWHVMAVTGVTPAS 353
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T SF++V+ +A +M+ +A + V R+E+ LA G S++E+++ + +V + +D
Sbjct: 354 TKSFEDVRDQLAAEMKKEQALDSVFSIANRVEDQLASGASLEEVAQAQGLVLTKVAAIDS 413
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
GK GK+ A + L + + + GS++ V++ IPA R L
Sbjct: 414 TGKAPDGKDAAPDLPALKALLPNAFQLKAGATSNLTEGEGGSFIAVRVDSVIPAAVRPLA 473
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR-DIGKNLGASLLTTNQINRMDN 539
+V V DW+ + + + KA ++ + + D+ GAS T R
Sbjct: 474 DVRDQVIADWQQEQRNDRAAKKAEEIATRLKQGAEAAAQDVATQAGASFAMTAPFTRDAQ 533
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD----KFISYLT 595
+ D ++++F+ V + V+ ++ + D + +
Sbjct: 534 TVQGLPGDMVAKLFTAKPNEVISGNSADAQ--VIARLKEIIPADPKAADADLAAVRASVE 591
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
Q M DL+ L+ +Y V +H I ++
Sbjct: 592 QGMEGDLMAEFTNALRDKYPVRIHRQRIDQFF 623
>gi|254701881|ref|ZP_05163709.1| rotamase family protein [Brucella suis bv. 5 str. 513]
gi|261752444|ref|ZP_05996153.1| rotamase [Brucella suis bv. 5 str. 513]
gi|261742197|gb|EEY30123.1| rotamase [Brucella suis bv. 5 str. 513]
Length = 628
Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats.
Identities = 180/631 (28%), Positives = 321/631 (50%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAACNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I LG T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELGLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G Q+F G +V + + ++FKVT P + YL
Sbjct: 537 ADI-GLAATEQIFRGANGLVGTAAAPSDDAQILFKVTEVTEPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I L
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAL 626
>gi|323138293|ref|ZP_08073365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
ATCC 49242]
gi|322396545|gb|EFX99074.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
ATCC 49242]
Length = 635
Score = 285 bits (727), Expect = 2e-74, Method: Composition-based stats.
Identities = 173/641 (26%), Positives = 308/641 (48%), Gaps = 18/641 (2%)
Query: 1 MLEIIRKASRTWV----AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
MLE +R AS+ W+ + + V+ V F IWG+ D +F +S +V VG +V SF
Sbjct: 1 MLEGLRVASQNWIGRTIMAVVMGVIVVSFAIWGVGD-VFRGMTTSRLVKVGSGEVSVDSF 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
N+++ EL I Q++ V ++ AR GLD ++L+ L++ LDQ +GL +
Sbjct: 60 RNAYQNELRRIQQRLRRAVTNQEARQAGLDLQVLERLITEVALDQKARQLGLASSDETTQ 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+A+ + G D KF + F G E+ ++ R + + G+ P
Sbjct: 120 QLLAKEKVLQGPDGKFDVERFKQIARDAGFTERGFVADQKSAYLRKLLTDLVTNGVEPPR 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
L+++ RF E+R++DY VL + PS+ L ++F++ + +RA EY++++ ++
Sbjct: 180 LMIEAIHRFRNESRTIDYFVLPVSAAGPASTPSDEELKKYFDEREQTFRAKEYRKLTALV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
K E++ DE++ YE++K ++ +PE R V Q+V KEA++A LK G
Sbjct: 240 VSPTSVGKPGEVTEDEVRKLYEESKARRFGTPEKRDVRQIVLKTDKEAEDALARLKGGMD 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
LA E + D++LG + D + ++F+LAK G + +FG VI+ V +
Sbjct: 300 IDALAAELKLNPKDVNLGLVEQRDFGDAKVGAAVFALAKPG-LAEPVKTAFGTVISQVKS 358
Query: 356 IKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
I P+ +T +F++ ++ ++ KA +V+ + +E+ A G ++ E ++ +
Sbjct: 359 IAPAVYTKTFEQAAPELRVEIAAQKAGPEVRRLHDAIEDQRAAGKTLAETAKGVGLDVRV 418
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ VD AG D GK +A +P LL F D + D TVA DG Y+W ++ PA
Sbjct: 419 IEAVDDAGHDKDGKAIADLPAGPDLLKAAFASDVGVDND-TVATRDGGYVWFEVNAVEPA 477
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R + EEV V + + + ++ KA++LV + + G+ D+ K++ A + +
Sbjct: 478 RQKTFEEVKGAVLEAMRNEAAQKALAEKADELVGKL-RSGQPIEDVAKSVNAEVKRATDV 536
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKF 590
R + F I Q F P P + G +VF V +S E
Sbjct: 537 KRAARPD--FNNPTIVQFFDVPPRGAGSLPGDAGR--LVFFVKDSTAPAFDPLSIESKTI 592
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L ++ DLL+ + L+ +V ++ ++ EK
Sbjct: 593 AEQLRPALHNDLLEQFVGGLEKALNVEINQKALEAATGTEK 633
>gi|254693848|ref|ZP_05155676.1| peptidyl-prolyl cis-trans isomerase D [Brucella abortus bv. 3 str.
Tulya]
gi|261214133|ref|ZP_05928414.1| rotamase [Brucella abortus bv. 3 str. Tulya]
gi|260915740|gb|EEX82601.1| rotamase [Brucella abortus bv. 3 str. Tulya]
Length = 628
Score = 285 bits (727), Expect = 2e-74, Method: Composition-based stats.
Identities = 179/631 (28%), Positives = 321/631 (50%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++W+AK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWIAKLLLGLLVLSFAIWGISDVFRGGMAGNAALTAGDSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L +SQ+ + E+A+++G++ ++L L +G LD+ ++ L + A
Sbjct: 61 EQQLMRLSQQFRQRLTREQAKAIGVENQVLAQLAAGVVLDEAARNMQLGLSQDAIARLTA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+++ K+ R +V GM+ + +L
Sbjct: 121 EDPAFHDAGGNFNRARFDAVLRQSGIRAEDYLENRAKVARRQQIVEAATDGMKLPDTMLK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RS DYI + AI PS VL +FE +K++Y+APEY++ISY+ +
Sbjct: 181 ALALYQGESRSADYIDVPAEKADAIPAPSEDVLKAYFEAHKEDYKAPEYRKISYVKLEPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK ++ +PE RT+EQL F + A+ A Q ++ G F+ +
Sbjct: 241 DIADPAAVTQDEISEYYEKNKARFSTPETRTIEQLNFADDAAAEAAHQKIEAGTSFLDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ SD++LG+F K IPD ++AD+ F+L + G +PV+ G FG V+ V+ I P+
Sbjct: 301 KEQGKTESDLTLGTFEKSGIPDQTIADAAFALGE-GAVSPVVKGIFGPVLLRVTKINPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I N + A+ + + E+ + G +M +++++ + + + +D
Sbjct: 360 EKPLSEVEGEIRNTLATNIAASSINSLHDSYEQERSDGATMADVAKKLHLKMVTVDAIDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GK V +P + LL VF + D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGDDPAGKPV-ELPNAQALLPAVFQAEQGFDND-PLTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L + ++G I L T I R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRMEEL-KKRVEDGATLDTIASELDLEKQTKRGITRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQ 596
G +Q+F G +V + + ++FKVT GP + YL
Sbjct: 537 ADI-GSAATAQIFRGANGLVGTAAAPSDDAQILFKVTEVTKPAAAGPEAIPEDQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+L ++ L+ QY V V+ +I
Sbjct: 596 ALADDMLQQLVGELQKQYPVKVNQAVINSAF 626
>gi|218549891|ref|YP_002383682.1| peptidyl-prolyl cis-trans isomerase [Escherichia fergusonii ATCC
35469]
gi|218357432|emb|CAQ90071.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia
fergusonii ATCC 35469]
Length = 638
Score = 284 bits (724), Expect = 4e-74, Method: Composition-based stats.
Identities = 117/638 (18%), Positives = 262/638 (41%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 16 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNGQEISRGQFENAF 74
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ D+ L +V
Sbjct: 75 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQ 134
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + + L + G++ +Y L+ ++ G
Sbjct: 135 AIFATPAFQV-DGKFDNSRYNAILNQMGMSADQYAQALRNQLTTQQLINGIAGTDFMLKG 193
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ S+A +T +++++K+N+ PE R+
Sbjct: 194 ETDELAALVSQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRV--SYI 251
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + +S+ ++QA Y+++++++ P+ + + EA +L G F
Sbjct: 252 MLDAANIQQPVSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFA 311
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+LA+E+ + LG P L D+ L KG + VI S G+++ +
Sbjct: 312 ELAKEKSADIISARNGGDLGWLEDSTTP-QELKDAG--LKDKGQLSGVIKSSVGFLVVRL 368
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ + EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 369 DDVQPAKVKTLAEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 426
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + +E+ P + + V P S + + +++ E
Sbjct: 427 KAKETGWFSQQNLPEELNFKPVADAIFSGSLVGENGTPGSNSDIITVDGDRAFVLRVSEH 486
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L EV VK + K ++ +A +L++E K GK + + G
Sbjct: 487 KAEAIKPLSEVKDQVKALVQHDKAEQQAKLEAEKLLVEL-KAGKGVDAM-RAAGLQFGEQ 544
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + P + + + + V+ + K G P +K
Sbjct: 545 KTLSRSGQD----PVSLAAFALGLPEKDKPSYGMATNTQGNVVLLALDEVKAGTMPEAQK 600
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 601 QALVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 638
>gi|296446388|ref|ZP_06888333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
trichosporium OB3b]
gi|296256161|gb|EFH03243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
trichosporium OB3b]
Length = 635
Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats.
Identities = 171/641 (26%), Positives = 307/641 (47%), Gaps = 18/641 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF 56
MLE +R AS+ + ++ L + + + F +WG+ D +F + + VG ++ ++
Sbjct: 1 MLEGLRIASQHRIGRVILGIVMGFIALSFAVWGIGD-VFRGFSTKRLAKVGSGEITVEAY 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ EL + Q+ + +E AR GLD+++L +++ TLDQ +GL V
Sbjct: 60 RGAYQNELRRLQQRARRAITNEEARRYGLDEQVLQRMITELTLDQKARALGLAIGDPDVL 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+ +F G KF D F L G E+ ++ R ++ VG M P
Sbjct: 120 KLVRDENVFKGPTGKFDSDRFKQILRDAGYTERSFLAEQKSGYVRKELTDSVVGAMEPPQ 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
L+L+ RF E R VDY L IA PS L ++FE + ++RA EY+R+ +
Sbjct: 180 LVLEALHRFRNEARDVDYFELPAAAAGEIAAPSEEELKKYFEDREQSFRAKEYRRLVILA 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNK-EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
K E+S +E + Y++ K ++Y + E R + QL+F + EAD A + L+ G
Sbjct: 240 ATPASLAKPQEVSEEEARKLYDEVKTKRYGTAEKRHLRQLLFAAKDEADAALKRLEGGLS 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F LA E+ + DI LG + + ++ L+D +F+ K G + +FGY I +
Sbjct: 300 FEALATERKLATKDIDLGLLEAKDLGEIKLSDKVFAPEKPGFVG-PVQTAFGYAILEIEK 358
Query: 356 IKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
I PS T SF++ + ++ ++ +A+ +V++ + +E+ A G ++ E ++ + +
Sbjct: 359 IVPSVVTRSFEQTRDELRGEIARERAAPQVQKVHDAIEDQRAGGKALAEAAKSLGLEVVA 418
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ D +G+D G+E+ ++ E LL F D + D TVA DG Y+W ++ + PA
Sbjct: 419 VEATDASGRDKAGQEIPSVFGSEDLLKAAFASDVGVDND-TVATRDGGYLWFEVAKVEPA 477
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R R EE +V+ + + + +++KA+ L E + GK D+ K+ GA N +
Sbjct: 478 RQRSFEEAKPNVEIAVREERLQKALAAKADALAAEL-RAGKTIADVAKSAGAESRRANDV 536
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKF 590
R N I VF PV ++ G +VF+V N+ P E
Sbjct: 537 KR--APNPAIPNAAIIAVFDTPVHGAGSVAVDGGR--LVFRVENATTQPYDASSLEAKAA 592
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ D+L+ + L+ Y+V+++ ++ GE+
Sbjct: 593 AEQMKPAFTNDILEQYVGALEKIYNVSINQKALEAATGGEQ 633
>gi|144898531|emb|CAM75395.1| peptidyl-prolyl cis-trans isomerse D [Magnetospirillum
gryphiswaldense MSR-1]
Length = 645
Score = 282 bits (720), Expect = 1e-73, Method: Composition-based stats.
Identities = 138/630 (21%), Positives = 285/630 (45%), Gaps = 13/630 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59
ML+ R AS++WV K+ +L + FL WG+ D + G ++VG + + +
Sbjct: 22 MLDSFRNASKSWVIKVLFGLLVLSFLAWGVEDVARNGLFGRGPAITVGDRDFAAAEVMVE 81
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+K+++ + + G ++ AR +GL + +D++V+ +D+ + L V ++
Sbjct: 82 FKRDMDQLQPQFGGKLSMADARKLGLMDRTIDSIVTRTLVDEAARGLSLATSDDEVIAKV 141
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
A P F + +F D+ L+R G +E+E++ + RT + GG+ L
Sbjct: 142 AAEPSFRNQLGQFDRDLLRQALSRAGWSEQEFMRQEKDNILRTQLAESLSGGLTAPQALT 201
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ R+ E R + + + +P A P A L Q+++ +++ APE++ I+ +L
Sbjct: 202 EPLIRWKRETRQAETVSIKASSMPQPAAPDAATLEQYYKANANSFMAPEFRAITALLLRT 261
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ + + ++++ L Y+ ++++ SPE RTV Q+V + AD+A + +K GK +
Sbjct: 262 TDAGRGLTVTDEMLTEAYKAREDEFHSPERRTVSQIVLADDASADKAAEMVKAGKDIKVI 321
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
A++ ++ I LG K +PD +G T + + G+ +A V+ I
Sbjct: 322 AKD--LGVNVIELGLVEKGDLPDE--LAGPVFDVGQGALTQPVKSALGWHVAKVTAITAE 377
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
T S EV++ +A + K+ +++ E ++E+ L G +++E + R ++ + + +D
Sbjct: 378 KTRSLAEVREMLAADILREKSMDRITELTNQVEDSLGGGATLEETATRFQLPLVRIAAMD 437
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
G+ GK V +P E L F + T +G +++ P + + L
Sbjct: 438 AKGRAPNGKPVTDLPGGESFLDVAFHTEQGTESQLTEMDGNG-LFLLRVDSITPPQPKVL 496
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
EV T+ W+ + + A+++ E K G+ + ++L T+ R
Sbjct: 497 SEVRTEAVAAWQAEQRQAAAKALADKI-AERVKAGEPLAKVAQSLSLKAETSAPFTREGG 555
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS----KVGPVQEKDKFISYLT 595
E ++ +F G V+ P +G ++V ++ + ++
Sbjct: 556 EASKMPPAIVTALFDGKPGRVEAAPSRDG--WMVAQLDKVMAFDAKADAKAAEQIRKRTN 613
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
++ DL+D IA L + V V + + R
Sbjct: 614 SAVSVDLIDQYIAALNVEMGVKVDRSQLSR 643
>gi|299134975|ref|ZP_07028166.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
gi|298589952|gb|EFI50156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
Length = 617
Score = 281 bits (717), Expect = 3e-73, Method: Composition-based stats.
Identities = 154/625 (24%), Positives = 283/625 (45%), Gaps = 15/625 (2%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
+ +L V F +WG++D +F S +T+ +VG +P F +++ +L IS++I
Sbjct: 1 MSVLFGILIVSFAVWGIAD-IFKGSTQTTLATVGNTDIPLEQFRSAYTDKLQQISRQIRR 59
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ + R+ G+D+++L ++ LD+ +GL + I+ P F G + KF
Sbjct: 60 PLTPTQGRAFGIDRQLLQQTIAETALDEEGRRMGLRMSDAEIVRTISSDPTFAGPNGKFD 119
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
F + E+ YI ++ R +++G V G+ P+ ++ RF E R++D
Sbjct: 120 PARFAMAMRDYSYTEQRYIAEQRRLTLRRELIGSIVAGVEPTKTQIEAISRFQDEQRTID 179
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
Y + I PS L +FE +K +RAPEY+++ Y+ E KK+ +S+D+
Sbjct: 180 YAKIGPDQAGTIEAPSPDALNTYFEAHKAQFRAPEYRKVVYLTLSPDELAKKVVVSDDDA 239
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
+ Y+ + Y P+ R V+Q+ F ++ A A + G F LA++ + D++LG
Sbjct: 240 RKVYDSRRADYVKPDRREVQQIAFQSEDAAKAARAKIAGGMSFEDLAKDMKLTSGDMNLG 299
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
S++ + D +A + F+L + + G+ V+ V+ I+P T +F++V I
Sbjct: 300 LVSEKSLGDPIIAKAAFALPLNE-VSQPVKGALATVLLKVTKIEPGSTEAFEKVAPAIKK 358
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
++ + + +E+ + G S+ E +++ + + + VD +G+ GKE AA+
Sbjct: 359 EIAEQRVRTDFDKMRNAVEDERSGGASIAEAAQKSGLEATTVD-VDRSGRTPDGKE-AAL 416
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
P L+ FG D + D G +W + P+RDR L+EV V W+
Sbjct: 417 PKGVDLITAAFGSDVGVDNDPL--TFPGGEVWFDVLGITPSRDRTLDEVKDQVTARWRDE 474
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ A + +KA +LV + +K G F K G + T+ R D N + F
Sbjct: 475 QVATRLRAKAKELVEKINKGGV-FATEVKAAGLTTQTSTPFKREDKVN-GLPDIVVDTAF 532
Query: 554 SGPVEMVKCFP-IENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQMMNKDLLDSVIA 608
I VVF+VTN K L Q ++ + + I
Sbjct: 533 RTAKGSAAMAENIPASSGVVVFQVTNVATPAVDLNSDASKKMKEGLAQNLSDEQIGQYIT 592
Query: 609 YLKSQYSVTVHDNLIQRYLD--GEK 631
+L++ V V++N+ G +
Sbjct: 593 HLETTLGVKVNENVFAIATGATGNQ 617
>gi|218675330|ref|ZP_03524999.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Rhizobium etli GR56]
Length = 579
Score = 280 bits (715), Expect = 4e-73, Method: Composition-based stats.
Identities = 191/566 (33%), Positives = 326/566 (57%), Gaps = 3/566 (0%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M +R+A++TWVAK+ L++L F +WG+S L S S+TVV+VG Q+V + F ++
Sbjct: 17 MFHFLRRAAQTWVAKLLLLLLVASFGVWGVSRELISGGNSTTVVTVGDQRVGVNEFHLAY 76
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ + Q+ G + E+AR+ G+++++L L++GA+LDQ D+ L R+ I
Sbjct: 77 QRQVASLGQQFGMRLTPEQARAFGVEQQVLSQLIAGASLDQLAADMNLGLSEDRLAQLIG 136
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + +F ++FVSRL I++ +YI +K+ R+ +V G L+D
Sbjct: 137 DDPAFKAVNGQFDRELFVSRLRNANIHQDDYIKERSKVAVRSQIVDAVSNGFTAPKTLVD 196
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K + E+R+VDY++L N ++ I P++ VL WFE K YRAPEY++I+Y+
Sbjct: 197 AMKLYGDESRAVDYLLLTNANIEPIKAPADDVLATWFEGVKQRYRAPEYRKIAYLKLQPA 256
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +++D+++ ++K K+ Y +PE RT+EQL F ++ A A +LK G F QL
Sbjct: 257 DIADVASVTDDQVREAFDKGKDSYRTPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLV 316
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+QGK+ SD+ LG F+K+ +PD ++AD+ F+++K G TPV+ GSFG VI ++NIK
Sbjct: 317 SDQGKTASDVLLGEFTKDKVPDQAVADAAFAVSKDGGTTPVVDGSFGPVILRITNIKAET 376
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+F EVK++I Q+ ++ AS++V + ++E+ A G ++++I+ + K+ ++ + VD
Sbjct: 377 VKNFDEVKEEIRKQLALSNASQEVINVHDQIEDLRAGGATLEDIAAQLKLKAMTVDAVDA 436
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D GKEV P K+QLL F + + + + + Y+W ++E P RDR +
Sbjct: 437 TGADKDGKEVKDTPVKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPIA 495
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV +DW + E++ KA++L E K G DI LG ++ + + I R +
Sbjct: 496 EVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIAAPLGIAVESKSSITR-STD 553
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIE 566
+ G G+ FSGPV+ V
Sbjct: 554 DAVLGRAGVKAAFSGPVDTVASAVGA 579
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/295 (10%), Positives = 79/295 (26%), Gaps = 12/295 (4%)
Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
+ + K + + Y+ ++I +V+ +V++ + E +
Sbjct: 230 ATWFEGVKQRYRAPEYRKIAYLKLQPADIADVASVTDDQVREAFDKGKDSYRTPESRTIE 289
Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
+ + + A + G+ + + F
Sbjct: 290 QLTFTSKDLAAAAETALKSGTSFDQLVSDQGKTASDVLLGEFTKDKVPDQAVADAAFAVS 349
Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
V G + ++I + +EV +++K ++EV + +Q+
Sbjct: 350 KDGGTTPVVDGSFGP-VILRITNIKAETVKNFDEVKEEIRKQLALSNASQEVINVHDQI- 407
Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-------FGYDGISQVFSGPVEMV 560
+ G DI L +T + ++ + + + F V +
Sbjct: 408 EDLRAGGATLEDIAAQLKLKAMTVDAVDATGADKDGKEVKDTPVKQQLLGEAFKTEVGVD 467
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
YV F V + + + + + L +
Sbjct: 468 APPLPIGNDGYVWFNVREITPDRDRPIAEVREKAVEDWTAEQQKA---ELAKKAD 519
>gi|46201422|ref|ZP_00055089.2| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
magnetotacticum MS-1]
Length = 623
Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats.
Identities = 150/629 (23%), Positives = 278/629 (44%), Gaps = 12/629 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML++ R AS+TW+ ++ +L + F+ WG D + G S + +G + + + +
Sbjct: 1 MLDVFRTASKTWIVRLLFALLALSFVAWGAGDVVRGGVGRSPAIEIGHTSMSATEVMGEF 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
K+E+ + G + E AR +G+ + +D+L++ +D+ +GL A + +A
Sbjct: 61 KREVERLQPLFGGKLTPEDARKMGMLDRTIDSLIARTLIDEAARSLGLAATDETILRRVA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P F G +F D+F SRLAR G E ++ + R +V G+ L +
Sbjct: 121 SNPAFKGPTGQFERDIFRSRLARVGHTEDSFMKAERTNMVRNQMVETVAAGISAPQALTN 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E R + V+ + P A P A L +++ + APEY+ ++ +L
Sbjct: 181 PLLAWREERRVAETFVIRDESTPLPAAPDAASLDAYYKDNLSRFMAPEYRALTVLLLRPA 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ I+I + ++ Y++ E++ +PE RTV Q+VF A +A + GK +A
Sbjct: 241 DVANAIDIDEEMVRETYQQRIEEFSTPERRTVSQIVFDESSAAAKATDMVTGGKDLAAVA 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ + I LG K +P + G + + G+ + V+ ++P
Sbjct: 301 KALNTDI--IELGIVEKNDLP--EGLAEAVFKLRAGATGQPVKTALGWHVVKVTQVQPGR 356
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T SF EVK + MR KA++ + E R+E+ L G +++E ++R + ++ + VD
Sbjct: 357 TRSFDEVKVQLEQDMRKEKATDGLSELANRVEDALGGGATLEEAAKRHNLKTMKIAAVDA 416
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G+ GK VA +P +Q L F D T +P+ Y +++ R L
Sbjct: 417 QGRGANGKPVADLPKSDQFLDVAFHTDQNTESPLT-EVPNNGYFLLRVDGVTAPAPRPLA 475
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
++ DV W+ + E+ KA +L + K G++ + ++ GA L T+ R E
Sbjct: 476 DIKADVVATWQAERRQEQARDKALKL-ADRIKAGESASQVAQSAGAKLETSKPFIREPGE 534
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV----GPVQEKDKFISYLTQ 596
I+++F V P++ G VV ++ + ++Q
Sbjct: 535 GSSLPPTIIAELFKAQPGGVATAPVQGGT--VVARLNSVIAFDINANPALTQAARQRVSQ 592
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ D+ D IA L + V V + R
Sbjct: 593 AVATDIADQYIAALNASIGVKVDRPQLTR 621
>gi|83310913|ref|YP_421177.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
magneticum AMB-1]
gi|82945754|dbj|BAE50618.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
magneticum AMB-1]
Length = 623
Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats.
Identities = 149/627 (23%), Positives = 274/627 (43%), Gaps = 8/627 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML++ R AS+TW+ ++ +L + F+ WG D + G S + +GR + + + +
Sbjct: 1 MLDVFRTASKTWIVRLLFALLALSFVAWGAGDVVRGGVGRSPAIEIGRTSMSAAEVMGEF 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
K+E+ + G + +E AR +G+ + +D+L++ +D+ +GL A + +A
Sbjct: 61 KREVERLQPLFGGKLTAEDARKMGMLDRTIDSLIARTLIDEAARSLGLAATDETILRRVA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P F G +F D+F SRL+R G E ++ + R +V G+ L D
Sbjct: 121 SNPAFKGPTGQFDRDLFRSRLSRLGHTEDSFMKTERTNMVRNQMVETVAAGIGAPQALTD 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E R + ++ + P A P AVL +++ + APE++ ++ +L
Sbjct: 181 PLLAWREERRVAETFLIKDESTPLPAAPDAAVLEAYYKDNVSRFMAPEFRALTVLLLRPS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ I+I + ++ Y + E++ +PE R V Q+VF A +A + GK +A
Sbjct: 241 DVAGGIDIDEEMVRDAYRQRIEEFSTPERRAVSQIVFDESSAAAKATDLVTGGKDLATIA 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ + D LG K +P G + + + G+ + VS I+P
Sbjct: 301 KALNSEIID--LGVIEKNDLP--EGLAEAVFKLSSGATSQPVKTALGWHVVKVSQIQPGR 356
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T SF EVK + MR KA++ + E R+E+ L G +++E ++R + ++ + VD
Sbjct: 357 TRSFDEVKAQLEQDMRKEKATDGLSELANRVEDALGGGATLEEAAKRHNLKTVKIAAVDA 416
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G+ GK VA +P +Q L F D T +P+ Y + + + L
Sbjct: 417 QGRGADGKPVADLPKSDQFLDVAFHTDQNTESPLT-EVPNNGYFLLHVDGVTAPAPKPLA 475
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
E+ ++V W+ + E+ KA +L + K G+ + + GA L T+ R E
Sbjct: 476 EIRSEVVATWQAERRQEQARDKALKL-ADRIKVGEGIAQVALSAGAKLETSKPFVREPAE 534
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK--VTNSKVGPVQEKDKFISYLTQMM 598
I+++F + P++ G VT ++Q +
Sbjct: 535 GTALPATIIAELFKAQPGGIATAPVQGGTLVARLAKVVTFDTNANPALTQAARQRVSQAV 594
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQR 625
D+ D IA L + V V + R
Sbjct: 595 ATDIADQYIAALNASIGVKVDRPQLTR 621
>gi|283784267|ref|YP_003364132.1| peptidyl-prolyl cis-trans isomerase D [Citrobacter rodentium
ICC168]
gi|282947721|emb|CBG87276.1| peptidyl-prolyl cis-trans isomerase D [Citrobacter rodentium
ICC168]
Length = 624
Score = 279 bits (711), Expect = 1e-72, Method: Composition-based stats.
Identities = 123/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNGQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L ++ L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NGERNRMQQQLGDQYSELAANEGYMKTLRQQTLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFSTPAFQV-DGKFDNNHYNALVIQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + + A + + ++E++K+N+ PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREATIDVQALAAKQQATEQEVASYYEQHKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D +K +++ ++Q+ Y+++++++ P+ + + EA +L KG F
Sbjct: 239 DAAAMQK--PVTDADVQSYYDQHQDEFTQPQRSRYSIIQTKTEDEAKAVLDALNKGGDFA 296
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + + +G + +PD L +KG + VI S G++IA +
Sbjct: 297 TLAKEKSADIISACNGGDMGWLEEATMPDEL---KNAGLKEKGQLSGVIKSSVGFLIARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ EV DIA +++ KA + +++ + T + ++ E+ +
Sbjct: 354 DDVQPAKVKPLSEVHDDIAAKVKQEKALDAFFALQQKVSDAANNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + V P + + ++I E
Sbjct: 412 KAVETGWFSRDSLPEELNFKPVSDAIFDGSLVGENGTPGRNSDIITVDGDRVFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L +V V + K K A++ A +L++E K GK + K G S
Sbjct: 472 KAEAVKPLADVKDQVTERVKYDKAAQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGAQ 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + + S P + + + N + VV + K G P +K
Sbjct: 530 KTLSRTNQD----PVSQAAFALSLPAKDKPGYGMANDMQGNVVVLALDEVKAGSMPEDQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D + Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDAMEQQ 623
>gi|238919016|ref|YP_002932530.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella
ictaluri 93-146]
gi|238868584|gb|ACR68295.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 626
Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats.
Identities = 109/637 (17%), Positives = 237/637 (37%), Gaps = 29/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V K+ L ++ + F++ G+ + L SG V Q++ + +
Sbjct: 1 MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSG-DYAAKVDGQEIGRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G + L K++L ++ LDQ+ + + L +V
Sbjct: 60 QNERSRLQQQLGDQFSVLAGNEGYMKELRKQVLSRMIDDVLLDQYAKKLNLAISDAQVKE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F ++ F + ++ +AR G++ Y + L ++ F
Sbjct: 120 AIRAMPYFQSDNH-FDNAKYLDMVARLGLSPDTYAQLVRQQLVTQQLIQGFTATGFTLPA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + R V ++ + + S+A L ++++++ ++ APE ++ YI
Sbjct: 179 EVNALAALTMQQRQVSLATIDISKLMPLQQVSDAELQGYYQQHQSSFIAPETVKVRYIEM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D K+ +SN E+ A Y+++K + P + + EA L G F
Sbjct: 239 DAAAINDKMTVSNAEISAYYDQHKGSFTQPARSDYSVIQVKTEAEAKAIAGQLASGADFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + LG +E PD A + KGD + I S GY+I +
Sbjct: 299 TLAKEKSTDIISRKNGGELGWLEQETTPDEIRAAKLSH---KGDVSAPIASSVGYLIVRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ I+P+ EV+ +IA++++ KA + +++ + D ++ E +
Sbjct: 356 NGIQPAVVKPLSEVRAEIADKVKQQKALDAFYALQQKVSDAATN--DNDSLAGAEDAAGV 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D + + P + + P S +++ +++ E
Sbjct: 414 KATETGWFSRDSVPQVLDFKPITQAIFDGSLFGENGTPGSNSDVISVEGDRAFVLRVSEH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + ++V V + K K + S +L+ K G
Sbjct: 474 KPEAVKPFDQVRDQVTELLKRQKAIAQARSDGEKLLAALQAGKG--EASLKAAGLRFGAE 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQ 585
+ R + VF+ P V + + + ++ G +
Sbjct: 532 QTLTRASED-----RQLTDTVFAMPHPQTDKPVYGISTDRHDNIALIRLNAVTAGHLSAE 586
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+ F S + D+++ L+ + +
Sbjct: 587 QMKAFASQMLTGETGITFDALMDNLRDNAKIKLGAAA 623
>gi|239832027|ref|ZP_04680356.1| rotamase family protein [Ochrobactrum intermedium LMG 3301]
gi|239824294|gb|EEQ95862.1| rotamase family protein [Ochrobactrum intermedium LMG 3301]
Length = 628
Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats.
Identities = 173/631 (27%), Positives = 312/631 (49%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++WVAK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWVAKLLLGLLVLSFAIWGISDVFRGGLSGNAALTAGGSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ +SQ+ + E+A+++G++ ++L L +G LD+ ++ L +
Sbjct: 61 EQQMMRLSQQFRQRLTREQAKTLGVENQVLAQLAAGVVLDEGARNMQLGLSKDGIARLTG 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+D+ K+ R +V G++ + L
Sbjct: 121 EDPAFHDASGNFNRAQFDAVLRQSGIRAQDYLDNRAKVARRQQIVEAATDGIKLPDAALK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E RSVDY+ + A+ PS+ L +FE KD Y+APEY++++Y+ +
Sbjct: 181 ALALYQGETRSVDYVTIQAEKADAVPAPSDDALKTYFEARKDEYKAPEYRKVTYVKLEPA 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK+++ + E R +EQL F + A+ A Q + G F+ +
Sbjct: 241 DIADPSAVTQDEISEYYEKNKDRFGTIEKRAIEQLNFADDAAAEAAQQKIAAGTSFVDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ D+ LG+F K IPD ++AD+ F+LA+ G +PV+ GSFG VI V+ I+P+
Sbjct: 301 KEQGKTEDDLKLGTFEKSAIPDQAVADAAFALAENG-VSPVVKGSFGPVILRVTQIEPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I + A+ + + E+ + G SM +++++ + ++ + VD
Sbjct: 360 VKPLAEVEGEIRTTLANNIAASSISGIHDSYEQERSDGASMADVAKKLSLKTVTVEAVDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D G V +P E LL F D D + + + Y+W Q+ PARDR L+
Sbjct: 420 GGNDPSGNPV-QLPNSEALLAAAFQADQGFDND-ALTMGNVGYLWYQVDGITPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + +L G I LG T + R N+
Sbjct: 478 EVKDKVVAAWKGEEAVKRLNQRVEELKKRLD-GGATLDTIASELGVEKQTKRGVVRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G +Q+F G + + ++FKVT P ++ Y
Sbjct: 537 ADI-GTAAAAQIFRGANGFTGSAAAPSDDAQILFKVTEVTEPAAAGPEAIPEQQQKYQAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
++ D+L+ ++ L+ QY V ++ +I L
Sbjct: 596 SLSDDILEQLVGELQKQYPVKINQTVINNAL 626
>gi|330829914|ref|YP_004392866.1| peptidylprolyl cis-trans isomerase D [Aeromonas veronii B565]
gi|328805050|gb|AEB50249.1| Peptidylprolyl cis-trans isomerase D [Aeromonas veronii B565]
Length = 637
Score = 277 bits (707), Expect = 4e-72, Method: Composition-based stats.
Identities = 120/637 (18%), Positives = 250/637 (39%), Gaps = 31/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R+ ++ VAK+ L ++ + F + G+ L + ++ +V ++ ++ N++
Sbjct: 2 MLDKLREGAQGKVAKVILGLIILSFALAGVGSYLNGPARTAP-ATVNGTEISAAALENAY 60
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + + + +LD L+ A LD ++GL ++
Sbjct: 61 RNERARMESQMGEAFSQLAANPDYMKQFRRGVLDRLIDQALLDSKARELGLRISDEQIKQ 120
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F ++ KF++D ++ + R G+ + + D + + R ++ +G
Sbjct: 121 AIVAMPEF-AENGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMSALLGTEFSLKG 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+Q + Y + R + + L + A S+ L Q+++ + E ++ Y+L
Sbjct: 180 EAEQLDKLYNQTRDLRLVRLAAANYMADVQVSDNELEQYYKTNGARFMNDEQVKVDYLLL 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSL 290
D K I+++ + Q Y+++++ + E R V ++ P +++A+
Sbjct: 240 DAANLAKDIKVTEQDAQDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEQKAEAVLAKA 299
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
K G F LA+ L F K + D + + F+L K GD + V+ F
Sbjct: 300 KAGDDFAALAKADSSDTFSAKKGGELDWFEKGVM-DPAFEKAAFALNKAGDLSTVVKSPF 358
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ I + ++ + T F +VK++ +++ KA EK + +++ + +
Sbjct: 359 GFHIIKLLGVEAAQTKPFADVKEETITRLQADKAKEKFFAEQQKMADSSFENPDSLD--L 416
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + + DF + + K + D + + L DG + +
Sbjct: 417 TADAMGMKVQSSDFFTQATAPAPLNDP--KVLSVAFSEQLRDDNTNSDVIELADGKALVL 474
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
I P + L EV V K K +E KA L+ + K G++ LG
Sbjct: 475 HITGHKPKAVKPLAEVKEQVIAAIKHDKASEVARGKAQGLLDKL-KVGESITADLTALGL 533
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVG 582
+ T + R D E + I+Q F+ P E VV + V
Sbjct: 534 KVETHKGVARFDRE---LDQNLIAQAFTLPHPIDGKPSVALVAETNGDRVVVALDKVNVP 590
Query: 583 PVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L Q + S+I L+ +
Sbjct: 591 AAASGMAAMLQAQLGQGKAQVDYKSLIDELRKAAKIE 627
>gi|312113155|ref|YP_004010751.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
vannielii ATCC 17100]
gi|311218284|gb|ADP69652.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
vannielii ATCC 17100]
Length = 633
Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats.
Identities = 142/636 (22%), Positives = 265/636 (41%), Gaps = 16/636 (2%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+ ++RK + I +L F I + +V +VG + F +++
Sbjct: 1 MHMLRKVA----VFIMFAILIGAFAISMGGNYYGDRERRQSVATVGSASISPEDFRRAYQ 56
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ L +SQ+ G ++ A++ GL ++L L+ A LD +++G+ V I
Sbjct: 57 RVLENVSQQAGRRISPAEAQAFGLPNRVLQGLIQDAALDLEAKELGVGLSEEGVRRGITS 116
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+F K FS D + L G + Y L R + G+F G LL+
Sbjct: 117 LDVFQDKG-VFSADKYHRFLQNIGYTAPFFEQEYRGDLIRRQLRGVFDGSGVVPKALLEA 175
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
++ E R++ Y L A+ P+ A L ++E K + PE +++S +
Sbjct: 176 YNKYGNEQRTLAYFTLTPEAAGAVPAPTEAELQAFYEDRKPQFMTPELRKVSALAISPQT 235
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF-IQLA 300
K + I +++L+AEY Y PE R +E + F + +AD A+ LK G + + +A
Sbjct: 236 VAKSLTIPDEDLKAEYAAKASVYSVPERRKLEIVPFKTRADADAAYAKLKSGARDLLGVA 295
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLAD----SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
++ G S +I G S++ + D + +KG + + G VI V +
Sbjct: 296 KDAGFSQPEIDAGVVSRKELADKFGINDAIVKEAFSTEKGWTSRPVDGPVSTVIMRVLEV 355
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
P SF EVK I + T+A + + K EE + G + + +++ + ++
Sbjct: 356 VPGQERSFAEVKDQIRADLAKTRAQSEFQRLIKAFEEDRSTGIPLADSAKKLNLPLEEV- 414
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+D + KD GK V L K D ++ + L G Y W ++ + + R
Sbjct: 415 TIDRSAKDADGKPVTVSVVPAAQLADAAFKSDVGVENEAIRLQGGGYAWFEVADVVKPRQ 474
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ LEEV +V+ W+ + + ++S+A LV K G+ + K++GA++ T+ + R
Sbjct: 475 KPLEEVKGEVEAAWRADQVRDRLASRARDLVARLDK-GETIDAVAKSVGATVKTSQPLKR 533
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISY 593
E+ I+Q F+ P ENG S VF++ ++
Sbjct: 534 NGKED-GVPPAAIAQAFTLPEGGAGSAGSENGTSRAVFQLAKITQPGPLAEEQAKGLEQQ 592
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
L ++ D + + + +++ G
Sbjct: 593 LAGAISDDNFSGFLNRITTASPISIDRKAFANVSGG 628
>gi|187732708|ref|YP_001879152.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella boydii
CDC 3083-94]
gi|187429700|gb|ACD08974.1| peptidylprolyl isomerase [Shigella boydii CDC 3083-94]
Length = 623
Score = 276 bits (704), Expect = 9e-72, Method: Composition-based stats.
Identities = 123/640 (19%), Positives = 260/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIHPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|269138352|ref|YP_003295052.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella
tarda EIB202]
gi|267984012|gb|ACY83841.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Edwardsiella
tarda EIB202]
gi|304558384|gb|ADM41048.1| Peptidyl-prolyl cis-trans isomerase PpiD [Edwardsiella tarda
FL6-60]
Length = 626
Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats.
Identities = 110/637 (17%), Positives = 238/637 (37%), Gaps = 29/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V K+ L ++ + F++ G+ + L SG V Q++ + +
Sbjct: 1 MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSG-DYAAKVDGQEIGRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G + L K++L ++ LDQ+ + + L +V
Sbjct: 60 QNERSRLQQQLGDQFSVLAGNEGYMKELRKQVLSRMIDDVLLDQYAQKLNLAISDAQVKE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F ++ F + ++ +AR G++ Y + L ++ F
Sbjct: 120 AIRAMPYFQTDNH-FDNAKYLDMVARLGLSPDAYAQLMRQQLVTQQLIQGFTATGFTLPA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + R V ++ + S+A L ++++++ ++ APE ++ YI
Sbjct: 179 EVDALAALTMQQRQVSLATIDISKLMPQQQVSDAELQGYYQQHQSSFIAPEAVKVRYIEM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D K+ +S+ E+ A Y+++K + P + + EA L G F
Sbjct: 239 DAAAINDKMTVSDAEISAYYDQHKGSFTQPARSDYSVIQVKTEAEAKAIAAQLANGADFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + LG E PD A + KGD + I S GY+I +
Sbjct: 299 TLAKEKSTDIISRKNGGELGWLEPETTPDEIRAAKLSH---KGDVSAPIASSVGYLIVRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
++++P+ EV+ +IA++++ KA + +++ + D ++ E +
Sbjct: 356 NDMQPAVVKPLSEVRAEIADKVKQQKALDAFYALQQKVSDAATN--DNDSLAGAEDAAGV 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D + + P + + P S +++ +++ E
Sbjct: 414 KATETGWFARDNVPQVLNFKPVVQAIFDGSLFGENGTPGSNSDVISVEGDRAFVLRVSEH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + EV V + K K + S+ +L+ K G S
Sbjct: 474 KPEAVKPFAEVRDQVTELLKRQKAIAQARSEGEKLLAALQAGKG--DAALKAAGLSFGAE 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQ 585
+ R + VF+ P V + + + ++ G +
Sbjct: 532 QTLTRASED-----RQLTDTVFAMPHPQTDKPVYGLSADRHDNIELIRLNAVTAGHLSAE 586
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+ F S + D+++ L++ + +
Sbjct: 587 QMKAFASQMLTGETGITFDALMDNLRANAKIKLGAAA 623
>gi|324114668|gb|EGC08636.1| ppic-type ppiase domain-containing protein [Escherichia fergusonii
B253]
Length = 622
Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats.
Identities = 116/637 (18%), Positives = 261/637 (40%), Gaps = 28/637 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNGQEISRGQFENAFN 59
Query: 62 QELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
E + Q++G + L +++L+ L+ A LDQ+ D+ L +V
Sbjct: 60 SERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQA 119
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I +P F D KF + + + L + G++ +Y L+ ++ G
Sbjct: 120 IFATPAFQV-DGKFDNSRYNAILNQMGMSADQYAQALRNQLTTQQLINGIAGTDFMLKGE 178
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
D+ + R V ++ S+A +T +++++K+N+ PE R+
Sbjct: 179 TDELAALVSQQRVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRV--SYIM 236
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ + +S+ ++QA Y+++++++ P+ + + EA +L G F +
Sbjct: 237 LDAANIQQPVSDADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFAE 296
Query: 299 LAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+E+ + LG P L D+ L KG + VI S G+++ +
Sbjct: 297 LAKEKSADIISARNGGDLGWLEDSTTP-QELKDAG--LKDKGQLSGVIKSSVGFLVVRLD 353
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+++P+ + EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DVQPAKVKTLAEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGVK 411
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + +E+ P + + V P S + + +++ E
Sbjct: 412 AKETGWFSQQNLPEELNFKPVADAIFSGSLVGENGTPGSNSDIITVDGDRAFVLRVSEHK 471
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ L EV VK + K ++ +A +L++E K GK + + G
Sbjct: 472 AEAIKPLSEVKDQVKALVQHDKAEQQAKLEAEKLLVEL-KAGKGVDAM-RAAGLQFGEQK 529
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEKD 588
++R + + P + + + + V+ + K G P +K
Sbjct: 530 TLSRSGQD----PVSLAAFALGLPEKDKPSYGMATNTQGNVVLLALDEVKAGTMPEAQKQ 585
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 ALVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 622
>gi|300924168|ref|ZP_07140160.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
gi|301049648|ref|ZP_07196597.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
gi|300298585|gb|EFJ54970.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
gi|300419621|gb|EFK02932.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
Length = 623
Score = 275 bits (701), Expect = 2e-71, Method: Composition-based stats.
Identities = 123/640 (19%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGGMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|215485522|ref|YP_002327953.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
O127:H6 str. E2348/69]
gi|215263594|emb|CAS07924.1| peptidyl-prolyl cis-trans isomerase D (rotamase D) [Escherichia
coli O127:H6 str. E2348/69]
Length = 623
Score = 275 bits (701), Expect = 2e-71, Method: Composition-based stats.
Identities = 123/640 (19%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKNLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|300820313|ref|ZP_07100465.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
gi|331666797|ref|ZP_08367671.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli TA271]
gi|331676113|ref|ZP_08376825.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli H591]
gi|300527098|gb|EFK48167.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
gi|331066021|gb|EGI37905.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli TA271]
gi|331076171|gb|EGI47453.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli H591]
Length = 623
Score = 275 bits (701), Expect = 2e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ D+A +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEVVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|153009380|ref|YP_001370595.1| rotamase family protein [Ochrobactrum anthropi ATCC 49188]
gi|151561268|gb|ABS14766.1| rotamase family protein [Ochrobactrum anthropi ATCC 49188]
Length = 628
Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats.
Identities = 176/631 (27%), Positives = 313/631 (49%), Gaps = 9/631 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R A+++WVAK+ L +L + F IWG+SD + ++ G +V + + ++
Sbjct: 1 MLDSLRSAAQSWVAKLLLGLLVLSFAIWGISDVFRGGLSGNAALTAGGSEVSATDYRFAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ +SQ+ + E+A+++G++ ++L L +G LD+ ++ L +
Sbjct: 61 EQQMMRLSQQFRQRLTREQAKTLGVENQVLAQLAAGVVLDEGARNMQLGLSKDGIARLTG 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH F+ F + L + GI ++Y+D+ K+ R +V G++ N L
Sbjct: 121 EDPAFHDASGNFNRAQFDAVLRQSGIRAQDYLDNRAKVARRQQIVEAATDGIKLPNTALK 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E RSVDY+ + A+ PS L +F+ +KD Y+APEY++I+Y+ +
Sbjct: 181 ALALYQGETRSVDYVTIQAEKADAVPAPSEDALKTYFDAHKDEYKAPEYRKITYVKLEPT 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++ DE+ YEKNK+++ + E RT+EQL F + A+ A Q + G FI +
Sbjct: 241 DIADPSAVTQDEINEYYEKNKDRFSTIEKRTIEQLNFADDAAAEAAQQKIAAGTSFIDIG 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+EQGK+ D+ LG+F K IPD ++AD+ F+LA+ G +PV+ G FG VI V+ I+P+
Sbjct: 301 KEQGKTEDDLKLGTFEKSAIPDQAVADAAFALAENG-VSPVVKGGFGPVILRVTQIEPAH 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
EV+ +I + A+ + + E+ + G SM +++++ + S+ + VD
Sbjct: 360 VKPQAEVEGEIRTTLANNIAASSISGIHDSYEQDRSDGASMADVAKKLSLKSVIVEAVDA 419
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G D G V +P E LL F D D + + + Y+W Q+ PARDR L+
Sbjct: 420 EGNDPSGNPV-QLPNSEALLSAAFQADQGFDND-ALTMGNIGYLWYQVDGVTPARDRTLD 477
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV V WK + + ++ + ++L + G I G T I R N+
Sbjct: 478 EVKDKVAAAWKGEEAVKRLNQRVDEL-QKRLDGGATLDAIATEQGVEKQTKRGIVRTTND 536
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQ 596
G +Q+F G + + ++FKV P ++ YL
Sbjct: 537 ADI-GTAAAAQIFRGANGFTGSAAAPSDDAQILFKVVEVTEPAGAGPEAIPEQQQKYLAT 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
++ D+L+ ++ L+ QY V ++ +I L
Sbjct: 596 SLSDDVLEQLVGELQKQYPVKINQTVINNAL 626
>gi|323191361|gb|EFZ76624.1| PPIC-type PPIASE domain protein [Escherichia coli RN587/1]
Length = 623
Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats.
Identities = 123/640 (19%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGLMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|170681699|ref|YP_001742585.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
SMS-3-5]
gi|218698647|ref|YP_002406276.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli IAI39]
gi|300937058|ref|ZP_07151924.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
gi|301022565|ref|ZP_07186437.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
gi|170519417|gb|ACB17595.1| peptidylprolyl isomerase [Escherichia coli SMS-3-5]
gi|218368633|emb|CAR16372.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
IAI39]
gi|284920251|emb|CBG33310.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 042]
gi|300397446|gb|EFJ80984.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
gi|300457889|gb|EFK21382.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
gi|323170528|gb|EFZ56178.1| PPIC-type PPIASE domain protein [Escherichia coli LT-68]
gi|323965128|gb|EGB60587.1| ppic-type ppiase domain-containing protein [Escherichia coli M863]
gi|327254769|gb|EGE66385.1| PPIC-type PPIASE domain protein [Escherichia coli STEC_7v]
Length = 623
Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ D+A +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|323976074|gb|EGB71167.1| ppic-type ppiase domain-containing protein [Escherichia coli
TW10509]
Length = 623
Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 262/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ D+A +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P +
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEE 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|291281348|ref|YP_003498166.1| Peptidylprolyl isomerase [Escherichia coli O55:H7 str. CB9615]
gi|209743820|gb|ACI70217.1| putative protease maturation protein [Escherichia coli]
gi|290761221|gb|ADD55182.1| Peptidylprolyl isomerase [Escherichia coli O55:H7 str. CB9615]
gi|320661211|gb|EFX28642.1| periplasmic folding chaperone [Escherichia coli O55:H7 str. USDA
5905]
Length = 623
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ +LQ+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ D+A +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ K+ +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKENLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDLAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|300997370|ref|ZP_07181710.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
gi|300304189|gb|EFJ58709.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
Length = 623
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWVEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|15800171|ref|NP_286183.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
O157:H7 EDL933]
gi|15829749|ref|NP_308522.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
O157:H7 str. Sakai]
gi|168747883|ref|ZP_02772905.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4113]
gi|168754546|ref|ZP_02779553.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4401]
gi|168760404|ref|ZP_02785411.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4501]
gi|168768396|ref|ZP_02793403.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4486]
gi|168777137|ref|ZP_02802144.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4196]
gi|168778934|ref|ZP_02803941.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4076]
gi|168786292|ref|ZP_02811299.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC869]
gi|168798005|ref|ZP_02823012.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC508]
gi|208809217|ref|ZP_03251554.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4206]
gi|208815330|ref|ZP_03256509.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4045]
gi|208823220|ref|ZP_03263538.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4042]
gi|209395856|ref|YP_002269088.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4115]
gi|217325591|ref|ZP_03441675.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. TW14588]
gi|254791625|ref|YP_003076462.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
str. TW14359]
gi|261223924|ref|ZP_05938205.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
str. FRIK2000]
gi|261256362|ref|ZP_05948895.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
str. FRIK966]
gi|12513303|gb|AAG54791.1|AE005223_6 putative protease maturation protein [Escherichia coli O157:H7 str.
EDL933]
gi|13359952|dbj|BAB33918.1| putative protease maturation protein [Escherichia coli O157:H7 str.
Sakai]
gi|187767557|gb|EDU31401.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4196]
gi|188017729|gb|EDU55851.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4113]
gi|189002976|gb|EDU71962.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4076]
gi|189357979|gb|EDU76398.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4401]
gi|189362425|gb|EDU80844.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4486]
gi|189369155|gb|EDU87571.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4501]
gi|189373538|gb|EDU91954.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC869]
gi|189379237|gb|EDU97653.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC508]
gi|208729018|gb|EDZ78619.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4206]
gi|208731978|gb|EDZ80666.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4045]
gi|208737413|gb|EDZ85097.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4042]
gi|209157256|gb|ACI34689.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. EC4115]
gi|209743814|gb|ACI70214.1| putative protease maturation protein [Escherichia coli]
gi|209743816|gb|ACI70215.1| putative protease maturation protein [Escherichia coli]
gi|209743818|gb|ACI70216.1| putative protease maturation protein [Escherichia coli]
gi|209743822|gb|ACI70218.1| putative protease maturation protein [Escherichia coli]
gi|217321812|gb|EEC30236.1| peptidylprolyl isomerase [Escherichia coli O157:H7 str. TW14588]
gi|254591025|gb|ACT70386.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli O157:H7
str. TW14359]
gi|320192857|gb|EFW67497.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7
str. EC1212]
gi|320638436|gb|EFX08150.1| periplasmic folding chaperone [Escherichia coli O157:H7 str. G5101]
gi|320643817|gb|EFX12940.1| periplasmic folding chaperone [Escherichia coli O157:H- str.
493-89]
gi|320649168|gb|EFX17746.1| periplasmic folding chaperone [Escherichia coli O157:H- str. H
2687]
gi|320656061|gb|EFX23977.1| periplasmic folding chaperone [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320665187|gb|EFX32280.1| periplasmic folding chaperone [Escherichia coli O157:H7 str.
LSU-61]
gi|326341205|gb|EGD64997.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7
str. 1044]
gi|326346020|gb|EGD69759.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli O157:H7
str. 1125]
Length = 623
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ +LQ+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADLQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ D+A +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDVAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ K+ +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKENLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|24111825|ref|NP_706335.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella flexneri
2a str. 301]
gi|30061943|ref|NP_836114.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella flexneri
2a str. 2457T]
gi|24050617|gb|AAN42042.1| putative protease maturation protein [Shigella flexneri 2a str.
301]
gi|30040187|gb|AAP15920.1| putative protease maturation protein [Shigella flexneri 2a str.
2457T]
gi|281599781|gb|ADA72765.1| putative protease maturation protein [Shigella flexneri 2002017]
gi|332760732|gb|EGJ91020.1| PPIC-type PPIASE domain protein [Shigella flexneri 4343-70]
gi|332761539|gb|EGJ91821.1| PPIC-type PPIASE domain protein [Shigella flexneri 2747-71]
gi|332768363|gb|EGJ98547.1| PPIC-type PPIASE domain protein [Shigella flexneri 2930-71]
gi|333008057|gb|EGK27533.1| PPIC-type PPIASE domain protein [Shigella flexneri K-218]
gi|333021934|gb|EGK41182.1| PPIC-type PPIASE domain protein [Shigella flexneri K-304]
Length = 623
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 120/640 (18%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 VAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V + + +++ E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|157159968|ref|YP_001457286.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
HS]
gi|312970538|ref|ZP_07784719.1| PPIC-type PPIASE domain protein [Escherichia coli 1827-70]
gi|157065648|gb|ABV04903.1| peptidylprolyl isomerase [Escherichia coli HS]
gi|310337187|gb|EFQ02325.1| PPIC-type PPIASE domain protein [Escherichia coli 1827-70]
Length = 623
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 124/640 (19%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V QK+ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQKISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|114327489|ref|YP_744646.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
CGDNIH1]
gi|114315663|gb|ABI61723.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
CGDNIH1]
Length = 656
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 137/647 (21%), Positives = 264/647 (40%), Gaps = 26/647 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML R + W ++ +L + F+ WG SD +G +V+V ++ +F ++
Sbjct: 14 MLATFRNSLNAWPVRLLFGLLVLAFVGWGFSDVWTQATGGGALVTVNGSRIEPQAFQATY 73
Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++EL + Q++G V + + + ++ L +V+ LD +GL +
Sbjct: 74 QRELNRVRQQMGGGRQDVPPDIRKM--VAQQALQQMVTETVLDDLTRKMGLTTPDADIRQ 131
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P F +F F + L G+ E Y+ + + ++ ++ G +
Sbjct: 132 ATYAMPAFKNDQGQFDQARFQAVLNSVGLTEDSYVAYLRRTITERQLLDAIRAGASAPKI 191
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+ + E RS D I + PA P++ L +++ + Y APEY+RI I+
Sbjct: 192 LVAPLFAWQKEQRSGDMIEVPVSAAPAPPQPTDKQLERYWANHPARYTAPEYRRIKAIVL 251
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
K IE+ +L+A Y+ N + +PE R V ++ P++ +A + G +
Sbjct: 252 TPETVAKAIEVPEKDLRAWYDANGIHFDTPEKRDVSIVLVPDEAKAKALAEQWDNGADWK 311
Query: 298 QL-AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
++ A S + L +K+ +P L F K +H S G+ + V I
Sbjct: 312 KISALANSDGGSAVELTGITKQQLPVPDLMPLAFETTKTDQIAGPVHDSLGWHVVRVGKI 371
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P+ SF+E+K++I + +A E++ + L+E A G+++D+ V+
Sbjct: 372 QPATHRSFEEMKEEIKQILSTQRAMEQIYDRSSHLDEAFAQGSTLDDKLPDADAVAAISG 431
Query: 417 LVDFAGKDVKGKEVAAIPYKE--QLLFRVFGKDDPLSKDHTVAL----------PDGSYM 464
+D G +G + Q L H V + +Y
Sbjct: 432 QLDMQGNTREGTPAPIPGSDQLKQALITAAFSMKKGDAPHLVPVTPQSQPGTPAGPTTYF 491
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
VQ+++ IP R EV +V DW K A + +L +EGK+ D
Sbjct: 492 AVQVEDIIPGALRPFPEVKAEVTADWIQDKRHHSQEEAATRAMLAL-QEGKSVADAVTLS 550
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
G +L + R E D +F+ + +G + + ++T
Sbjct: 551 GGTLKQIPLLTRKG-ETGDVSADTRRALFALKLNDSTMVNTPDG--FAIIRLTRILSPTE 607
Query: 585 QEK----DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
++ + +TQ + +DL ++ +A L+S+ V++ L+QR +
Sbjct: 608 KDDPAAFSQAREQITQGLAEDLENTFLASLRSKADARVNNALLQRIM 654
>gi|16128426|ref|NP_414975.1| periplasmic folding chaperone, has an inactive PPIase domain
[Escherichia coli str. K-12 substr. MG1655]
gi|26246452|ref|NP_752491.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
CFT073]
gi|74311016|ref|YP_309435.1| peptidyl-prolyl cis-trans isomerase [Shigella sonnei Ss046]
gi|82542929|ref|YP_406876.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella boydii
Sb227]
gi|89107311|ref|AP_001091.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K-12
substr. W3110]
gi|91209515|ref|YP_539501.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli UTI89]
gi|110640702|ref|YP_668430.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
536]
gi|117622701|ref|YP_851614.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
APEC O1]
gi|170021186|ref|YP_001726140.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
ATCC 8739]
gi|170080027|ref|YP_001729347.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
str. K-12 substr. DH10B]
gi|188496348|ref|ZP_03003618.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 53638]
gi|191173673|ref|ZP_03035197.1| peptidylprolyl isomerase [Escherichia coli F11]
gi|193067528|ref|ZP_03048495.1| peptidylprolyl isomerase [Escherichia coli E110019]
gi|218557351|ref|YP_002390264.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
S88]
gi|218688305|ref|YP_002396517.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ED1a]
gi|218703725|ref|YP_002411244.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli UMN026]
gi|227884548|ref|ZP_04002353.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
83972]
gi|237707564|ref|ZP_04538045.1| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA]
gi|238899729|ref|YP_002925525.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
BW2952]
gi|256023940|ref|ZP_05437805.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia sp.
4_1_40B]
gi|293403562|ref|ZP_06647653.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli FVEC1412]
gi|293408591|ref|ZP_06652430.1| conserved hypothetical protein [Escherichia coli B354]
gi|298379174|ref|ZP_06989055.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli FVEC1302]
gi|300900512|ref|ZP_07118679.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
gi|300918176|ref|ZP_07134783.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
gi|300947906|ref|ZP_07162054.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
gi|300958009|ref|ZP_07170173.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
gi|300988004|ref|ZP_07178484.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
gi|301025663|ref|ZP_07189181.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
gi|301330692|ref|ZP_07223294.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
gi|301647367|ref|ZP_07247179.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
gi|306813091|ref|ZP_07447284.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
NC101]
gi|307137086|ref|ZP_07496442.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
H736]
gi|307312181|ref|ZP_07591817.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W]
gi|309794826|ref|ZP_07689247.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
gi|312964534|ref|ZP_07778790.1| PPIC-type PPIASE domain protein [Escherichia coli 2362-75]
gi|331640961|ref|ZP_08342096.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli H736]
gi|331651379|ref|ZP_08352404.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli M718]
gi|331656498|ref|ZP_08357460.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli TA206]
gi|331661822|ref|ZP_08362745.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli TA143]
gi|331681836|ref|ZP_08382469.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli H299]
gi|83288412|sp|P0ADY2|PPID_ECOL6 RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
D; AltName: Full=Rotamase D
gi|83288413|sp|P0ADY1|PPID_ECOLI RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
D; AltName: Full=Rotamase D
gi|26106850|gb|AAN79035.1|AE016756_218 Peptidyl-prolyl cis-trans isomerase D [Escherichia coli CFT073]
gi|1580712|dbj|BAA11645.1| YbaU [Escherichia coli W3110]
gi|1773125|gb|AAB40197.1| similar to H. influenzae HI1004 [Escherichia coli]
gi|1786645|gb|AAC73544.1| periplasmic folding chaperone, has an inactive PPIase domain
[Escherichia coli str. K-12 substr. MG1655]
gi|73854493|gb|AAZ87200.1| putative protease maturation protein [Shigella sonnei Ss046]
gi|76365131|gb|ABA42059.1| peptidyl-prolyl isomerase [Escherichia coli]
gi|81244340|gb|ABB65048.1| putative protease maturation protein [Shigella boydii Sb227]
gi|85674581|dbj|BAE76221.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K12
substr. W3110]
gi|91071089|gb|ABE05970.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli UTI89]
gi|110342294|gb|ABG68531.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 536]
gi|115511825|gb|ABI99899.1| peptidyl-prolyl isomerase [Escherichia coli APEC O1]
gi|169756114|gb|ACA78813.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
ATCC 8739]
gi|169887862|gb|ACB01569.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
str. K-12 substr. DH10B]
gi|188491547|gb|EDU66650.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli 53638]
gi|190906031|gb|EDV65646.1| peptidylprolyl isomerase [Escherichia coli F11]
gi|192958940|gb|EDV89376.1| peptidylprolyl isomerase [Escherichia coli E110019]
gi|218364120|emb|CAR01785.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
S88]
gi|218425869|emb|CAR06675.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
ED1a]
gi|218430822|emb|CAR11696.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
UMN026]
gi|222032236|emb|CAP74975.1| Peptidyl-prolyl cis-trans isomerase D [Escherichia coli LF82]
gi|226898774|gb|EEH85033.1| peptidyl-prolyl cis-trans isomerase [Escherichia sp. 3_2_53FAA]
gi|227838634|gb|EEJ49100.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
83972]
gi|238861991|gb|ACR63989.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
BW2952]
gi|260450372|gb|ACX40794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
DH1]
gi|291429415|gb|EFF02435.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli FVEC1412]
gi|291471769|gb|EFF14252.1| conserved hypothetical protein [Escherichia coli B354]
gi|294490510|gb|ADE89266.1| peptidylprolyl isomerase [Escherichia coli IHE3034]
gi|298280287|gb|EFI21791.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli FVEC1302]
gi|299880017|gb|EFI88228.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
gi|300315276|gb|EFJ65060.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
gi|300355993|gb|EFJ71863.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
gi|300407556|gb|EFJ91094.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
gi|300414627|gb|EFJ97937.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
gi|300452506|gb|EFK16126.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
gi|300843353|gb|EFK71113.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
gi|301074512|gb|EFK89318.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
gi|305853854|gb|EFM54293.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
NC101]
gi|306907683|gb|EFN38185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli W]
gi|307552348|gb|ADN45123.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ABU 83972]
gi|307628089|gb|ADN72393.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
UM146]
gi|308121479|gb|EFO58741.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
gi|309700702|emb|CBI99998.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli ETEC
H10407]
gi|312290768|gb|EFR18645.1| PPIC-type PPIASE domain protein [Escherichia coli 2362-75]
gi|312945019|gb|ADR25846.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
O83:H1 str. NRG 857C]
gi|315059721|gb|ADT74048.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
W]
gi|315135123|dbj|BAJ42282.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli DH1]
gi|315289841|gb|EFU49231.1| PPIC-type PPIASE domain protein [Escherichia coli MS 110-3]
gi|315294225|gb|EFU53576.1| PPIC-type PPIASE domain protein [Escherichia coli MS 153-1]
gi|315299565|gb|EFU58813.1| PPIC-type PPIASE domain protein [Escherichia coli MS 16-3]
gi|315616618|gb|EFU97235.1| PPIC-type PPIASE domain protein [Escherichia coli 3431]
gi|320186071|gb|EFW60816.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella flexneri CDC
796-83]
gi|320197085|gb|EFW71704.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli
WV_060327]
gi|323164242|gb|EFZ50049.1| PPIC-type PPIASE domain protein [Shigella sonnei 53G]
gi|323379714|gb|ADX51982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
KO11]
gi|323938627|gb|EGB34876.1| ppic-type ppiase domain-containing protein [Escherichia coli E1520]
gi|323943248|gb|EGB39404.1| ppic-type ppiase domain-containing protein [Escherichia coli E482]
gi|323952947|gb|EGB48815.1| ppic-type ppiase domain-containing protein [Escherichia coli H252]
gi|323958634|gb|EGB54337.1| ppic-type ppiase domain-containing protein [Escherichia coli H263]
gi|324010072|gb|EGB79291.1| PPIC-type PPIASE domain protein [Escherichia coli MS 57-2]
gi|324010655|gb|EGB79874.1| PPIC-type PPIASE domain protein [Escherichia coli MS 60-1]
gi|324116929|gb|EGC10842.1| ppic-type ppiase domain-containing protein [Escherichia coli E1167]
gi|331037759|gb|EGI09979.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli H736]
gi|331051120|gb|EGI23172.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli M718]
gi|331054746|gb|EGI26755.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli TA206]
gi|331060244|gb|EGI32208.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli TA143]
gi|331081038|gb|EGI52203.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli H299]
Length = 623
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|333008127|gb|EGK27602.1| PPIC-type PPIASE domain protein [Shigella flexneri VA-6]
Length = 623
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 120/640 (18%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 VAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNET--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V + + +++ E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|332341805|gb|AEE55139.1| peptidyl-prolyl cis-trans isomerase PpiD [Escherichia coli UMNK88]
Length = 623
Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 260/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P +
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEE 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|117618139|ref|YP_856546.1| peptidylprolyl cis-trans isomerase D [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559546|gb|ABK36494.1| peptidylprolyl cis-trans isomerase D [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 636
Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats.
Identities = 114/638 (17%), Positives = 243/638 (38%), Gaps = 33/638 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R+ ++ VAK+ L ++ + F + G+ L + ++ +V + ++ N++
Sbjct: 1 MLDKLREGAQGKVAKVILGLIILSFALAGVGSYLNGPARTAP-ATVNGNDISSAALENAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + + + +LD L+ A D ++GL ++
Sbjct: 60 RNERARMESQMGESFSQLAANPDYMKQFRRGVLDRLIDQALFDSKARELGLRVSDEQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F +D KF++D ++ + R G+ + + D + + R ++G +G
Sbjct: 120 AIVAMPEF-AEDGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMGALLGTEFALKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+Q + Y + R + + L S+ + Q+++ ++ E ++ Y+L
Sbjct: 179 EAEQLDKLYNQTRDLRLVRLAASAYLGDVKVSDEEVEQYYKANSSHFMNDEQVKVDYLLL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSL 290
D K +++S + Q Y+++++ + E R V ++ P +++A+
Sbjct: 239 DAATLGKDVKVSEQDAQDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEQKAEAVLTKA 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
K G F LA+ L F K + D + + F+LAK GD + V+ F
Sbjct: 299 KAGDDFAALAKADSSDTFSAKKGGELDWFEKGVM-DPAFEKAAFALAKAGDLSTVVKSPF 357
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE-IS 405
G+ + + ++P+ T F +VK + ++++ KA E + +++ + + +
Sbjct: 358 GFHVIKLLGVEPAQTKPFADVKAETISRLQADKAKELFFAEQQKMADSSFENPDSLDLTA 417
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ A + + D + + L DG +
Sbjct: 418 DTMGLKVQSTGYFSQADAPAPLNDPKVL-----SAAFSEQLRDDNTNSDVIELADGKALV 472
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ I P + L EV V K K +E KA L+ + K G+N + LG
Sbjct: 473 MHITGHQPKAAKPLAEVKEQVIAAIKHDKASEVARGKAQGLLDKL-KAGENIQAELTALG 531
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKV 581
+ + + R + + ++Q F P E VV + V
Sbjct: 532 LKVENHDGVARFAQD---LDQNLVAQAFRMPHPIDGKPSVELVTEANGDRVVVALDKVTV 588
Query: 582 GPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
L Q + S+I L+ +
Sbjct: 589 AKEPSGMAKLLQGQLGQGKAQVSYKSLIDELRKSAKIE 626
>gi|82775652|ref|YP_401999.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella
dysenteriae Sd197]
gi|81239800|gb|ABB60510.1| putative protease maturation protein [Shigella dysenteriae Sd197]
Length = 623
Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats.
Identities = 123/640 (19%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDNLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA ++R KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVRHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|256020413|ref|ZP_05434278.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Shigella sp. D9]
gi|332281592|ref|ZP_08394005.1| conserved hypothetical protein [Shigella sp. D9]
gi|320201685|gb|EFW76261.1| Peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli EC4100B]
gi|332103944|gb|EGJ07290.1| conserved hypothetical protein [Shigella sp. D9]
Length = 623
Score = 274 bits (699), Expect = 3e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAQQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|300903291|ref|ZP_07121219.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
gi|301301592|ref|ZP_07207727.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
gi|300404586|gb|EFJ88124.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
gi|300843089|gb|EFK70849.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
gi|315256269|gb|EFU36237.1| PPIC-type PPIASE domain protein [Escherichia coli MS 85-1]
Length = 623
Score = 274 bits (699), Expect = 4e-71, Method: Composition-based stats.
Identities = 123/640 (19%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQTAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|281177612|dbj|BAI53942.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE15]
Length = 623
Score = 274 bits (699), Expect = 4e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|194435312|ref|ZP_03067524.1| peptidylprolyl isomerase [Shigella dysenteriae 1012]
gi|194416444|gb|EDX32601.1| peptidylprolyl isomerase [Shigella dysenteriae 1012]
gi|332085739|gb|EGI90903.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 155-74]
Length = 623
Score = 274 bits (698), Expect = 4e-71, Method: Composition-based stats.
Identities = 123/640 (19%), Positives = 260/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFAIPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDGLNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QVAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPNYGMATDMQGNVVLLVLDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|218693904|ref|YP_002401571.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
55989]
gi|218350636|emb|CAU96328.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
55989]
Length = 623
Score = 274 bits (698), Expect = 4e-71, Method: Composition-based stats.
Identities = 124/640 (19%), Positives = 262/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L S + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLISGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAQQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|157156448|ref|YP_001461628.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
E24377A]
gi|157078478|gb|ABV18186.1| peptidylprolyl isomerase [Escherichia coli E24377A]
Length = 623
Score = 274 bits (698), Expect = 5e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 260/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQASMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|332094597|gb|EGI99643.1| PPIC-type PPIASE domain protein [Shigella boydii 5216-82]
Length = 623
Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 260/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETGELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QVAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPNYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|331671987|ref|ZP_08372783.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli TA280]
gi|320173739|gb|EFW48922.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella dysenteriae CDC
74-1112]
gi|331070976|gb|EGI42335.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli TA280]
Length = 623
Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRDL------ISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|293413696|ref|ZP_06656345.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B185]
gi|291433754|gb|EFF06727.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B185]
Length = 623
Score = 273 bits (697), Expect = 5e-71, Method: Composition-based stats.
Identities = 123/640 (19%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRARYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKQKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|209917658|ref|YP_002291742.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
SE11]
gi|218553008|ref|YP_002385921.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli IAI1]
gi|293418512|ref|ZP_06660947.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B088]
gi|300818227|ref|ZP_07098438.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
gi|209910917|dbj|BAG75991.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11]
gi|218359776|emb|CAQ97317.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
IAI1]
gi|291325040|gb|EFE64455.1| peptidyl-prolyl cis-trans isomerase D [Escherichia coli B088]
gi|300529118|gb|EFK50180.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
gi|323184728|gb|EFZ70099.1| PPIC-type PPIASE domain protein [Escherichia coli 1357]
gi|323945347|gb|EGB41403.1| ppic-type ppiase domain-containing protein [Escherichia coli H120]
gi|324016698|gb|EGB85917.1| PPIC-type PPIASE domain protein [Escherichia coli MS 117-3]
Length = 623
Score = 273 bits (697), Expect = 6e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KILSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|193064188|ref|ZP_03045272.1| peptidylprolyl isomerase [Escherichia coli E22]
gi|194428997|ref|ZP_03061529.1| peptidylprolyl isomerase [Escherichia coli B171]
gi|260842642|ref|YP_003220420.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
12009]
gi|192929217|gb|EDV82827.1| peptidylprolyl isomerase [Escherichia coli E22]
gi|194412934|gb|EDX29224.1| peptidylprolyl isomerase [Escherichia coli B171]
gi|257757789|dbj|BAI29286.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
12009]
gi|323160448|gb|EFZ46396.1| PPIC-type PPIASE domain protein [Escherichia coli E128010]
Length = 623
Score = 273 bits (696), Expect = 7e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L +G F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNEGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KILSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|320178277|gb|EFW53251.1| Peptidyl-prolyl cis-trans isomerase ppiD [Shigella boydii ATCC
9905]
Length = 623
Score = 273 bits (696), Expect = 7e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QVAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPNYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|110804469|ref|YP_687989.1| peptidyl-prolyl cis-trans isomerase [Shigella flexneri 5 str. 8401]
gi|110614017|gb|ABF02684.1| putative protease maturation protein [Shigella flexneri 5 str.
8401]
Length = 623
Score = 273 bits (696), Expect = 8e-71, Method: Composition-based stats.
Identities = 120/640 (18%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQ-IDGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 VAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V + + +++ E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KILSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|261341042|ref|ZP_05968900.1| peptidylprolyl cis-trans isomerase D [Enterobacter cancerogenus
ATCC 35316]
gi|288316907|gb|EFC55845.1| peptidylprolyl cis-trans isomerase D [Enterobacter cancerogenus
ATCC 35316]
Length = 624
Score = 273 bits (696), Expect = 8e-71, Method: Composition-based stats.
Identities = 117/640 (18%), Positives = 253/640 (39%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLI-GGGANYAAKVNGQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L ++ L+ L+ A LDQ+ +++GL +V
Sbjct: 60 AGERNRMQQQLGDQFSELAANEGYMNNLRQQTLNRLIDEALLDQYAKNLGLGISDEQVKK 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + F + KF + + S + + G+ +Y L+ ++ VG
Sbjct: 120 AIFSTQAFQS-NGKFDNTRYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A S+A + W+E+ K+++ APE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQQVSDAEVNAWYEQNKNSFVAPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + S+ ++Q+ Y+++++++ P+ + + +A L KG F
Sbjct: 239 DAAALQG--NASDADIQSYYDQHQDQFTQPQRNRYSVIQTKTEADAKAVLDELNKGADFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+ + + +G PD L KG + VI S G+++A +
Sbjct: 297 TLAKAKSTDIISAKNGGDMGWLEAATTPDEL---KNAGLKDKGQLSGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++ + T EV+ +IA +++ KA + +++ + + + ++ E+ +
Sbjct: 354 DDVQAAKTKPLAEVRDEIAAKVKQEKALDAFYALQQKVSDAASN--DNESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ G D +E+ P + + V P S + + +++ +
Sbjct: 412 KAVETGWFGHDNLPEELNFKPVSDAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRVTDH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L EV V K K ++ A +L+ + K G S
Sbjct: 472 KAEAVKPLAEVKDQVIAQVKHSKAEQQAKLDAEKLLAALKAGKG--DEALKAAGLSFGEA 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG--PVQ 585
++R + FS + V+ + K G P
Sbjct: 530 KTLSRTGQD------PVSQAAFSLSQPAKGKPGYGTATDMQGNVVLLALDEVKAGTLPDA 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + +++++ L+ + + + D + Q+
Sbjct: 584 QKKAMVQGITQNNAQITFEAMMSNLRKEAKIKLGDVITQQ 623
>gi|331645617|ref|ZP_08346721.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli M605]
gi|331045779|gb|EGI17905.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Escherichia coli M605]
Length = 623
Score = 273 bits (696), Expect = 8e-71, Method: Composition-based stats.
Identities = 122/638 (19%), Positives = 260/638 (40%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + V P + + + + V+ + K G P +K
Sbjct: 530 KTLSRSGRD----PISQAAFVLPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|296101563|ref|YP_003611709.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295056022|gb|ADF60760.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 623
Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 260/640 (40%), Gaps = 33/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLI-GGGANYAAKVNGQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L ++ L+ L+ A LDQ+ + +GL +V
Sbjct: 60 AGERNRMQQQLGDQFSELAANEGYMKTLRQQTLNRLIDEALLDQYAKKLGLGISDEQVKK 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + F + KF + + S + + G+ +Y L+ ++ VG
Sbjct: 120 AIFSTQAFQS-NGKFDNARYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A S+A + W+E+ K+++ APE R+SYI
Sbjct: 179 ETDELAALVAQQRVVRQATIDVNALAAKQQVSDAEVNAWYEQNKNSFVAPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ ++ E+Q+ Y+++++++ P+ + + +A L KG F
Sbjct: 239 DAAALQE--TATDAEIQSYYDQHQDQFTQPQRNRYSVIQTKTEADAKAVLDELNKGADFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+A+ + + +G PD L KG + VI S G+++A +
Sbjct: 297 TVAKAKSTDIISAKNGGDMGWLEAATTPDEL---KNAGLKDKGQLSGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+ + T EV+ DIA +++ KA + +++ + + + ++ E+ +
Sbjct: 354 DDIEAAKTKPLAEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ G+D +E+ P + + V P S + + +++ E
Sbjct: 412 KAVETGWFGRDNLPEELNFKPVSDAIFNGGLVGENGTPGSNSDIITVDGDRAFVLRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +++ + D K G S
Sbjct: 472 KPEAIKPLAEVKDQVVAQVKHSKAEQQAKLDAEKILADLKAGK---EDALKAAGLSFGDA 528
Query: 532 NQINRMDNENKFFGYDGISQVF--SGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQ 585
++R + VF S P + F + V+ + K G P
Sbjct: 529 KTLSRTGQD------PISQAVFGLSLPAKDKPSFGTTTDMQGNVVLLALDEVKAGTMPEA 582
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
++ + +TQ + +++++ L+ + + + D + Q+
Sbjct: 583 QRKAMVQGITQNNAQIAFEAMMSNLRKEAKIKLGDAITQQ 622
>gi|300930256|ref|ZP_07145669.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
gi|300461828|gb|EFK25321.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
Length = 623
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 260/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKTLVQHNNAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|332141940|ref|YP_004427678.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
macleodii str. 'Deep ecotype']
gi|327551962|gb|AEA98680.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
macleodii str. 'Deep ecotype']
Length = 630
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 110/641 (17%), Positives = 242/641 (37%), Gaps = 30/641 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ A + ++ + F+ G+ L S +G++ V +V +++ ++
Sbjct: 1 MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-NGTTAVATVNGEEISAQELERAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + + G + S K +LD L++ + Q ++GL ++
Sbjct: 60 QNQRAQMESQYGESIAQLFSSEQYLADFRKNVLDRLIAEKLIQQQATNMGLRVSDEQIRE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + P F +F ++ F + L + G ++ D+ +++ + +
Sbjct: 120 TIVQMPEFQ-FGGQFDNERFQAILRQNGFQVADFRDYLRTQMTQNQLAAALTNSSFALDG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++QA + R+ Y+++++ + ++A + ++ ++ E +++Y+
Sbjct: 179 EVEQANALQRQTRNAKYVLVSSDEFADSIEVTDADIEAFYNNNIASFDTEEQVKLAYVKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------FQSL 290
V + + ++ + D ++ Y+ N Y + E R V ++ +AD A +
Sbjct: 239 SVEDLKGRVSVDEDAVRTYYDNNLGSYGTEEQRRVSHILIEAGDDADAAKAKAESLKAEI 298
Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G F LAE G F + D + ++ FSL GD + V+ FG
Sbjct: 299 DSGADFAALAEANSDDTFSAENGGDLDFITPEMMDPAFDEAAFSLENVGDVSDVVETEFG 358
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISR 406
Y + ++ +K + +F EV +I + + A EK E L E + ++D+ +
Sbjct: 359 YHVIKLTEVKEAQVKTFDEVAGEIRDTLLYDAAMEKYFELQNTLAEIAFEVPDTLDDAAN 418
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + L + + + + + L D + +
Sbjct: 419 AVDLPIQESVLFSRNTAPAELSSPGLL-----DVAFSSELVEEGLNSDIIELDDETVVVA 473
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ E P R + L+EV ++ K K+ E S A V + + G++ D
Sbjct: 474 RVVEHQPQRTQSLDEVREGIEASVKAEKSKEAAESWAFD-VAQKVRAGESVEDELAAKSV 532
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVGPV 584
T + R + +FS +E + V + P
Sbjct: 533 EWETAANVQRAG---GTLARALVDTLFSLALEGDDQVDVATTVNGDVAVVMLEGVNPAPA 589
Query: 585 QEKD---KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
E + L Q+ + + I L++ VT+ + L
Sbjct: 590 LESELGKSLKQRLAQVQGQRVYQQYIDALRANAEVTISEAL 630
>gi|260853664|ref|YP_003227555.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
11368]
gi|257752313|dbj|BAI23815.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
11368]
gi|323153478|gb|EFZ39732.1| PPIC-type PPIASE domain protein [Escherichia coli EPECa14]
Length = 623
Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats.
Identities = 122/640 (19%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKVVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KILSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|157146942|ref|YP_001454261.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Citrobacter
koseri ATCC BAA-895]
gi|157084147|gb|ABV13825.1| hypothetical protein CKO_02719 [Citrobacter koseri ATCC BAA-895]
Length = 623
Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats.
Identities = 121/638 (18%), Positives = 266/638 (41%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L S + V Q++ S F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGSN-NYAAKVNDQEISRSQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYAHELKLSISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFSTAAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLIAGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A ++ ++ ++E+ K+ + PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQQATDQEVSSYYEQNKNRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +++ ++Q+ Y+++++++ P+ + + EA +L KG F
Sbjct: 239 DAAAMQE--TVNDADIQSYYDQHQDQFTQPQRNRYSVIQTKTEDEAKAVLDALNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G PD L +KG + VI S G+++A +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATTPDEL---KNAGLKEKGQLSGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ E + DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDVQPAKVKPLSEARDDIAAKVKQEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ D +E+ P + + V P S + + ++I E
Sbjct: 412 KAVETGWFSHDNLPEELNFKPVADAIFNGGLVGENGTPGSNSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V V K K ++ A++L++E K GK + K G S
Sbjct: 472 KPEAVKPLADVKEQVAALVKHNKAEQQAKLDADKLLVEL-KAGKGAEAM-KAAGLSFGEA 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + P + + + N + V+ + + K G P ++K
Sbjct: 530 KTLSRTGQD----PVSQAAFALGLPEKDKPSYGVANDMQGNVVLLALDDVKAGSMPEEQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + +++++ L+ + V D L Q+
Sbjct: 586 KAMVQGITQNNAQITFEALMSNLRKAAKIKVGDALEQQ 623
>gi|194437396|ref|ZP_03069493.1| peptidylprolyl isomerase [Escherichia coli 101-1]
gi|253774568|ref|YP_003037399.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160511|ref|YP_003043619.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
B str. REL606]
gi|194423565|gb|EDX39555.1| peptidylprolyl isomerase [Escherichia coli 101-1]
gi|242376223|emb|CAQ30914.1| periplasmic folding helper protein [Escherichia coli BL21(DE3)]
gi|253325612|gb|ACT30214.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972412|gb|ACT38083.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
B str. REL606]
gi|253976622|gb|ACT42292.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
BL21(DE3)]
gi|323972295|gb|EGB67505.1| ppic-type ppiase domain-containing protein [Escherichia coli TA007]
Length = 623
Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats.
Identities = 121/640 (18%), Positives = 258/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNNAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|260866602|ref|YP_003233004.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
11128]
gi|257762958|dbj|BAI34453.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
11128]
gi|323178290|gb|EFZ63868.1| PPIC-type PPIASE domain protein [Escherichia coli 1180]
Length = 623
Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats.
Identities = 123/640 (19%), Positives = 262/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + ++ L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSLYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKVVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KILSRSGRD------PISQAAFTLPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|323963431|gb|EGB58993.1| ppic-type ppiase domain-containing protein [Escherichia coli H489]
Length = 623
Score = 272 bits (693), Expect = 2e-70, Method: Composition-based stats.
Identities = 120/640 (18%), Positives = 258/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNNAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + ++ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVILLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|333010902|gb|EGK30328.1| PPIC-type PPIASE domain protein [Shigella flexneri K-272]
gi|333020704|gb|EGK39964.1| PPIC-type PPIASE domain protein [Shigella flexneri K-227]
Length = 623
Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 119/640 (18%), Positives = 258/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATSAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ E R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQPATEQEIASYYEQNKNNFMTSEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 VAAMMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + +++ E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ + + V+ + K G P
Sbjct: 530 KTLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPED 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|304391667|ref|ZP_07373609.1| peptidyl-prolyl cis-trans isomerse D [Ahrensia sp. R2A130]
gi|303295896|gb|EFL90254.1| peptidyl-prolyl cis-trans isomerse D [Ahrensia sp. R2A130]
Length = 632
Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats.
Identities = 155/634 (24%), Positives = 291/634 (45%), Gaps = 13/634 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML +R W AKI L++L F +WG++ ++ S +++V +VG KVP F++++
Sbjct: 1 MLGALRGFVTGWTAKILLILLVASFALWGITGSILSGGDTTSVAAVGETKVPVREFLSAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + Q+ G + + AR G++++ L N+V+ ATLD+F GL ++ IA
Sbjct: 61 NRNMNEVQQRAGRRLTRDEARIFGVEQRALGNVVAWATLDEFARVHGLALSDKQLAQMIA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P FH ++ + F + + + E ++I+ R+ + F G +
Sbjct: 121 ENPAFHDSTGSYNRETFRQAVFQAQMRESDFIEAQNASAVRSQLTRSFADGPILPDTFKA 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E R +Y+ + A P+ L +FE K NY APEY+++ +
Sbjct: 181 ALANYAQEQRVFEYLTITPAIAGEPAAPTAEQLKTYFEANKANYAAPEYRKLDLLSLRPE 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +E+S++E++A+Y+ +Y PE R V+Q+VFP+++ A+ A +SL++G F +
Sbjct: 241 DLAASMEVSDEEIEADYQARISRYQEPERRRVQQIVFPSREAAEAAKKSLEEGAFFETVV 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
E ++++D LG +K+ +P + + + VI G FG VI V+ + +
Sbjct: 301 AEADRTMADADLGLMAKDALP--AHLQDPAFGLEVNAISDVIDGPFGSVIVRVTEVNEAR 358
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T EVK I N M + +A+ ++ + +E+ A G+S+ E + + + + VD
Sbjct: 359 TTPLDEVKDTIKNAMALERAASRITSLSEEIEDSRAGGSSLAEAAPKFDLKIRSVE-VDA 417
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G+ G ++ IP LL + F + + + + ++W + E ARDR +
Sbjct: 418 RGRTPDGTQLTDIPQSSDLLRQAFETEVGA-QASALDIGAAGFVWYDVTEIAAARDRTQD 476
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL----TTNQINR 536
EV + DW + + V KA L G + R++ + S L TT +NR
Sbjct: 477 EVTERLTTDWMAAERGKMVQQKAEALKARLD-GGASMRELSAEVDPSTLGAAPTTQPLNR 535
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL-- 594
+ F + F G + + ++ KV ++ +
Sbjct: 536 TG-TAQGFPSAATQEGFKGAEGHIAIVDGSEAGTSILLKVKEVRLPEAAAAPNVDQQVNI 594
Query: 595 -TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ DLL+ +IA L+ +Y VT + I L
Sbjct: 595 ANEGAADDLLNQMIARLQGEYGVTQNPQTIDMAL 628
>gi|292490923|ref|YP_003526362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
halophilus Nc4]
gi|291579518|gb|ADE13975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
halophilus Nc4]
Length = 637
Score = 271 bits (691), Expect = 3e-70, Method: Composition-based stats.
Identities = 105/649 (16%), Positives = 241/649 (37%), Gaps = 38/649 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR ++ A + + ++ +PF +WG+++ F G + SV +++ F ++
Sbjct: 1 MLEAIRSRAQGIFAWVIVGLITIPFALWGINNY-FREGGEALAASVNGEEITTREFRAAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + + E +++L+ L+ + ++GL + I
Sbjct: 60 QRYTQQLRFLMREGFSEEMLDDPATKQRVLEGLIEQRLVLDAAGELGLGMSDSELSKVIH 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ F + +F + S L +G+ Y L + + ++
Sbjct: 120 NNEAFQDETGQFDFQRYESVLNSQGLTTAAYEARLRLSLLSEQLASTLHLSAFATQQEME 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R + R + Y ++ + S+ L Q++E++ D +R PE + Y+
Sbjct: 180 DIARLRHQEREIGYGIVPSSKFRDAIQISDEELRQYYEEHPDEFRTPERVAVDYLRLTAK 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQ 288
I + L+ Y ++K+++ +PE R ++ + +A+EA +
Sbjct: 240 SLATDIPVDEQTLRDLYAESKDQFGTPEQRRASHILVQVPQGGDDAARQAAREKAEEALR 299
Query: 289 SLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
L++G+ F ++A+E G + LG F + + D + ++ FSL K GD + +
Sbjct: 300 RLQQGEPFEEVAKEVSEDPGSAQQGGDLGFFGRGVM-DPAFEEAAFSLEKVGDLSEPVLS 358
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FGY I ++ I+ SF+EV++++A + R A E E + L+ E+
Sbjct: 359 KFGYHIIQLTGIQRGEAPSFEEVREELAQKYRQQLAEEHFYEQAETLDNLTYENPFTLEV 418
Query: 405 SRR-EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ ++ +G G + T+ L
Sbjct: 419 AAEALELPIETSEPFSRSGGSGIGANPKVV-----TAAFSEEVLQEEMNSRTLELGPNDL 473
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ +++K+ PA + EEV ++++ + + + + LV +
Sbjct: 474 VVLRVKKHFPADIKPFEEVREKIQENLTLERAKAKAREQGDALVERLRQGEAPESVFAGE 533
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG----LSYVVFKVTNS 579
N+ + + + + P + Y V +
Sbjct: 534 -----EAWNEKKFYSRRGEGIPREILKMAYGLPHPQSESPVFAGQPLGSGDYAVVGLYTV 588
Query: 580 KVGPVQEKDK-----FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
K G +++ D+ + QM + I L+++ + ++ + +
Sbjct: 589 KDGDLKQLDEKARQSLAQEVEQMHGQVAYRGFIDELRAEADIKIYRDNL 637
>gi|146310569|ref|YP_001175643.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Enterobacter sp.
638]
gi|145317445|gb|ABP59592.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp.
638]
Length = 624
Score = 271 bits (691), Expect = 3e-70, Method: Composition-based stats.
Identities = 113/640 (17%), Positives = 257/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ + F++ G+S L S+ V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIILSFILTGVSGYLI-GGSSNYAAEVNGQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L ++ ++ L+ A LDQ+ + +GL +V
Sbjct: 60 AGERNRMQQQLGDQFSELAANEGYMKTLRQQTVNRLIDEALLDQYAKRLGLGISDDQVKK 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + F + KF + + + + + G+ +Y L+ ++ VG
Sbjct: 120 AIFSTQAFQT-NGKFDNTRYNAIVNQMGMTADQYAQALRNQLTSQQLINAVVGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A S+ + ++E+ K+N+ APE R+SYI
Sbjct: 179 ETDELAALVSQQRVVRAATIDVNALAAKQQASDEEVKAYYEQNKNNFTAPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + S+ ++Q+ Y+++++++ + + + +A L KG F
Sbjct: 239 DAATMPE--TASDSDIQSYYDQHQDQFTQAQRNRYSVIQTKTEADAKAVVDELAKGADFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+A+ + + +G P+ L +KG + VI S G+++ +
Sbjct: 297 TVAKAKSTDIISAKNGGDMGWLEDATTPEEL---KNAGLKEKGQLSGVIKSSVGFLVVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ T EV+ DIA +++ KA + +++ + + + ++ E+ +
Sbjct: 354 DDIQPAKTKPLAEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + G D +E+ P + + + P + + + +++ E
Sbjct: 412 KAVVTGWFGHDNLPEELNFKPVSDAIFNGGLLGDNGTPGNNSDIITVDGDRAFVLRVTEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ LE+V + K K ++ A +L+ E K G S
Sbjct: 472 KAEAIKPLEDVKDQIATLVKHTKAEQQAKLDAEKLLAELKAGKG--DAALKAAGLSFGEA 529
Query: 532 NQINRMDNENKFFGYDGISQVF--SGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQ 585
++R + F S P + + + + VV + K G P +
Sbjct: 530 KTLSRTGQD------PISQAAFGLSLPAKDKPSYGTASDMQGNIVVLALDEVKAGTMPDE 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + +++++ L+ + + + D + Q+
Sbjct: 584 QKKAMVQGITQNNAQIAFEALMSNLRKEAKIKLGDIITQQ 623
>gi|313646932|gb|EFS11389.1| PPIC-type PPIASE domain protein [Shigella flexneri 2a str. 2457T]
gi|332763740|gb|EGJ93978.1| PPIC-type PPIASE domain protein [Shigella flexneri K-671]
Length = 622
Score = 271 bits (691), Expect = 3e-70, Method: Composition-based stats.
Identities = 119/639 (18%), Positives = 258/639 (40%), Gaps = 32/639 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAFN 59
Query: 62 QELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 SERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQA 119
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 IFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGE 178
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 TDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLV 238
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
++ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 AATMQQ--PVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAA 296
Query: 299 LAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+E+ + +G IPD L +KG + VI S G++I +
Sbjct: 297 LAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRLD 353
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGVK 411
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ KD +E+ P + + V + + +++ E
Sbjct: 412 ATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASGINSDIITVDGDRAFVLRVSEHK 471
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 PEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPK 529
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQE 586
++R + F+ P+ + + V+ + K G P +
Sbjct: 530 TLSRSGRD------PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQ 583
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 KKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 622
>gi|317492905|ref|ZP_07951329.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316919027|gb|EFV40362.1| ppic-type ppiase domain-containing protein [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 627
Score = 271 bits (691), Expect = 3e-70, Method: Composition-based stats.
Identities = 113/637 (17%), Positives = 244/637 (38%), Gaps = 29/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ V F++ G+ L SG V Q++ +
Sbjct: 1 MMDNLRAAANHVVLKIILGLIIVSFVLTGVGGYLTGGSG-DYAAKVDGQEISRGQLEQAV 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G + L K+ L+ L+ LDQ+ + +GL +V
Sbjct: 60 QSERSRLQQQLGDQFSVLAGNEGYMKELRKQALNRLIDDMLLDQYAKKLGLGISDEQVKE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F + ++S +A G+ Y + L+ ++ + +
Sbjct: 120 AIWAMPYFQTNN-QFDNAKYLSIIANMGLTPDNYAQLVRQQLTSQQLIQAYTATGFTLPV 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + R V ++ + + ++ L ++E+ K+++ APE ++SYI
Sbjct: 179 EVEAMAALTMQQRDVRLATIDIKALEKDQKVTDEELKAYYEQNKNSFIAPEEVKVSYIEM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + K+ +S+DE+ A Y+++K Y PE + + + +A L G F
Sbjct: 239 DAAAIQDKVTVSDDEIAAYYDQHKSSYTQPERKDYSVIQVKTEADAKAVLDELNSGADFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
++A E+ LG PD L L KG + + S GY++ +
Sbjct: 299 KVAAEKSTDIISRKKGGELGWLEPGTTPDEILGAK---LTTKGQLSGAVKSSVGYLVVRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
++IKP EV+ DI Q++ KA + +++ + + + + ++ E+ +
Sbjct: 356 NDIKPEQVKPLAEVRADIEAQVKQQKALDAFFALQQKVSD--SATSDNESLAGAEEAAGV 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D + P + + P S +++ ++I
Sbjct: 414 KATETGWFTRDNVPAAINFKPVTQAIFEGSLFGENGAPGSNSDVISVEGDRAFVIRISAH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + +++V + + K K ++ ++ ++L+ + K G S
Sbjct: 474 KPEAVKPMDQVKEQITEMVKRQKAIQQARTEGDKLLTALQAGKG--EEALKAAGISFGAE 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQ 585
+ R + VF+ V + + V+ ++ K G +
Sbjct: 532 QTLTRASED-----RQLADTVFALAQPKDNKPVYGLAQDRQDNIVLIQLDAVKSGHLSNE 586
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
E F S + DS++ L++ + +
Sbjct: 587 ELKAFSSQMLTGSTGITFDSLMDNLRANAKIKLGSAA 623
>gi|330910235|gb|EGH38745.1| peptidyl-prolyl cis-trans isomerase ppiD [Escherichia coli AA86]
Length = 623
Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats.
Identities = 121/638 (18%), Positives = 258/638 (40%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + L + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREAAIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G IPD L +KG VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATIPDEL---KNAGLKEKGQLAGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLAGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L+++ K GK + + G
Sbjct: 472 KPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + V P + + + + V+ + K G P +K
Sbjct: 530 KTLSRSGRD----PISQAAFVLPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|283834240|ref|ZP_06353981.1| peptidylprolyl cis-trans isomerase D [Citrobacter youngae ATCC
29220]
gi|291069758|gb|EFE07867.1| peptidylprolyl cis-trans isomerase D [Citrobacter youngae ATCC
29220]
Length = 624
Score = 270 bits (689), Expect = 4e-70, Method: Composition-based stats.
Identities = 123/640 (19%), Positives = 259/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLI-GGGKNYAAKVNGQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRELKLNISDDQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFTTPSFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINSVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A ++ +T ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRIVREATIDVNALAAKQSVTDQEVTSYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAAAMQE--TASDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ +G + PD L +KG + VI S G+++A +
Sbjct: 297 ALAKEKSADIISARKGGDMGWLEESTTPDEL---KNAGLKEKGQLSGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ E + DIA +++ KA + +++ + + + ++ E+ +
Sbjct: 354 DDVQPAQVKPLSEARDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQAAGM 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D KE+ P + + V P S + + ++I E
Sbjct: 412 KAVETGWFSRDSLPKELNFKPVADIIFNGGLVGENGTPGSNSDIITVDGDRAFVLRIAEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L EV V K K ++ A++L+ + D K G S
Sbjct: 472 KAEAVKPLAEVKEQVTALVKHNKAVQQAKLDADKLLADLKAGKG--DDAMKAAGLSFGEA 529
Query: 532 NQINRMDNENKFFGYDGISQVF--SGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQ 585
++R + F S P + + + N + V+ + K G P
Sbjct: 530 KTLSRTGQD------PLSQAAFGLSLPAQDKPSYGVANDMQGNVVLLALEEVKAGSMPEA 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + +++++ L+ + V D L Q+
Sbjct: 584 QKKAMVQGITQNNAQITFEALMSNLRKAAKIKVGDALEQQ 623
>gi|237730418|ref|ZP_04560899.1| peptidyl-prolyl cis-trans isomerase [Citrobacter sp. 30_2]
gi|226905957|gb|EEH91875.1| peptidyl-prolyl cis-trans isomerase [Citrobacter sp. 30_2]
Length = 624
Score = 270 bits (689), Expect = 5e-70, Method: Composition-based stats.
Identities = 118/640 (18%), Positives = 256/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NFAAKVNGQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ LV A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLVDEALLDQYSRELKLNISDDQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRIVREATIDVNALAAKQSVTEQEVASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ S+ ++Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAAAMQE--TASDADIQSYYDQHQDQFTQPQRNRYSIIQTKTEDEAKAVLDELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ +G PD L +KG + VI S G+++A +
Sbjct: 297 ALAKEKSADIISARKGGDMGWLEDSTTPDEL---KNAGLKEKGQLSGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ E + +IA +++ KA + +++ + + + ++ E+ +
Sbjct: 354 DDVQPAQVKPLSEARDEIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQAAGM 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + V P S + + ++I E
Sbjct: 412 KAVETGWFSRDSLPEELNFKPVADIIFNGGLVGENGTPGSNSDIITVDGDRAFVLRIAEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L EV V K K ++ A++L+ + + K G S
Sbjct: 472 KAEAVKPLAEVKEQVTALVKHNKAEQQAKLDADKLLADLKAGKG--DEAMKAAGLSFGEA 529
Query: 532 NQINRMDNENKFFGYDGISQVF--SGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQ 585
++R + F S P + + + N + V+ + K G P
Sbjct: 530 KTLSRTGQD------PLSQAAFGLSLPAKDKPSYGVANDMQGNVVLLALDEVKAGSMPEA 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKAAKIKIGDALEQQ 623
>gi|253687447|ref|YP_003016637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251754025|gb|ACT12101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 626
Score = 270 bits (689), Expect = 5e-70, Method: Composition-based stats.
Identities = 114/640 (17%), Positives = 252/640 (39%), Gaps = 30/640 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + +
Sbjct: 1 MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSG-DYAAKVNGQEITRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + +G + S L ++ L L+ LDQ+ +GL ++
Sbjct: 60 QNERSRQQEALGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDEQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F ++ ++ ++ R G+ Y K L+ ++ F
Sbjct: 120 AIFDVPAFQTNN-RFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNSSFLLPQ 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + ++R V ++ ++ + ++++ K N+ APE ++SYI
Sbjct: 179 EIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEVQSYYDQNKGNFIAPEEFKVSYITL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D +++ + + YE+NK Y PE + + N+ +A +LK+G F
Sbjct: 239 DAASIMDGVKVDDAAINDFYEQNKNDYSQPERKKFSVIQVKNEADATSVLDALKQGGDFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + LG + + D L +KG + I S GY+I +
Sbjct: 299 TLAKEKSTDIISRRNGGDLGWMDENSMIDEL---KQAKLTEKGQISAAIKSSVGYLIVRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P EV+ +IA +++ KA + +++ E + + ++ E+ +
Sbjct: 356 DDVQPQQIKPLSEVRAEIAEKVKHEKAQDGYYALQQKVSEAASN--DNESLASAEEAAGV 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D+ ++ + P + + + + + + ++I E
Sbjct: 414 KATQTDWFTREKVPAALNFQPVTQAIFSGALLGENGTAGNNSDVINVDGDRAFVLRITEH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P R L++V T++ + K K ++ A +++ E + D K G S
Sbjct: 474 KPESTRPLDQVRTEIVETLKRQKAEQQARLDAEKILAELKQGK---DDALKAAGLSFGEA 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKV--GPVQ 585
++ + G +F+ P + + V+ + + +
Sbjct: 531 KTMSSISQ-----GDATAEAIFAMPHPEKDKSSYAIAQDQAGNVVLVALDSVTPHQLNDE 585
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K +F S + Q L DS+++ L+S+ + + + ++
Sbjct: 586 QKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAQEQ 625
>gi|24373364|ref|NP_717407.1| peptidyl-prolyl cis-trans isomerase D [Shewanella oneidensis MR-1]
gi|24347627|gb|AAN54851.1|AE015624_4 peptidyl-prolyl cis-trans isomerase D [Shewanella oneidensis MR-1]
Length = 621
Score = 270 bits (689), Expect = 5e-70, Method: Composition-based stats.
Identities = 112/635 (17%), Positives = 239/635 (37%), Gaps = 39/635 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR S+ +AK LV++ + F G+S L + V K+ + ++
Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL-GSTSEVPAAEVNGDKITKAELEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++++ + + +L+ LV+ +DQ +GL ++
Sbjct: 60 QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF ++ + + L + G + + ++R + VG
Sbjct: 120 AIKSEPAFQT-DGKFDNERYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q + R + Y+V+++ A A ++ + +++ + + +PE + Y+
Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLAKASVTDEQVKSYYDANQGQFMSPEKVSLEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-------FPNQKEADEAFQSL 290
+ + K +++++E Q Y+++K +Y S E R ++ + +A++ + L
Sbjct: 239 NAADFAKDSKVTDEEAQTYYDEHKAQYVSNEKRLAAHILIALGSDEAAAKAKAEDLAKQL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G F LA+ + L F + D + ++F+L K G + V+ F
Sbjct: 299 DNGADFAALAKANSEDTLSAEQGGKLDWFEPGVM-DPTFDTALFALQK-GQHSGVVKTDF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ I + +I+P TV F +VK I Q++ KA ++ +L + D ++
Sbjct: 357 GFHIIKLLDIQPGTTVPFADVKTKIFAQLQEKKAVDQFYSLQSKLAD--TSYEVPDTLAE 414
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
K+V +++ +D + + + L + +
Sbjct: 415 TAKVVGVEIKTTPLFSRDDVPAALNKPDVVKAAFSDPV--MRQGLNSEVIELEPNHVVVI 472
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++KE A L EV D+ + K + E +KA +L+ + + K
Sbjct: 473 RMKEHHDAGTMPLAEVKADIAERLKQEQANEAARAKAEELMAQVKAGAADVSLTAK---- 528
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVGP- 583
++ + + + F P G Y V +
Sbjct: 529 --------TKLGRGAQDVDAAIVGKAFQMPTPSAAPVVGTVGLANGYAVVALDKVNAADS 580
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ + L ++ +I LK+ V
Sbjct: 581 VSDELVNALKQRLNAQYSEADYRGLIESLKANAKV 615
>gi|227113469|ref|ZP_03827125.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 626
Score = 270 bits (689), Expect = 5e-70, Method: Composition-based stats.
Identities = 113/640 (17%), Positives = 252/640 (39%), Gaps = 30/640 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + +
Sbjct: 1 MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSG-DYAAKVNGQEITRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + +G + S L ++ L L+ LDQ+ +GL ++
Sbjct: 60 QNERSRQQETLGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDEQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F ++ ++ ++ R G+ Y K L+ ++ F
Sbjct: 120 AIFDVPAFQTDN-RFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNTAFLLPQ 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + ++R V ++ ++ + ++++ K N+ APE ++SYI
Sbjct: 179 EIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEIQSYYDQNKGNFIAPEEFKVSYITL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D +++ + + YE+NK Y PE + + N+ +A +LK+G F
Sbjct: 239 DAASIMDGVKVDDAAINDFYEQNKSGYSQPERKKFSVIQVKNEADAASVLDALKQGGDFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + LG + + D L +KG + I S GY+I +
Sbjct: 299 TLAKEKSTDVISRRNGGDLGWMDENSMIDEL---KQAKLTEKGQVSEAIKSSVGYLIVRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P EV+ +IA +++ KA + +++ E + + ++ E+ +
Sbjct: 356 DDVQPQQVKPLSEVRAEIAEKVKHEKAQDGYYALQQKVSEAASN--DNESLASAEEAAGV 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D+ ++ + P + + + + + + ++I E
Sbjct: 414 KATQTDWFTREKVPAALNFQPVTQAIFSGALLGENGTAGNNSDVINVDGDRAFVLRITEH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P R L++V T++ + K K ++ A +++ E + + K G S
Sbjct: 474 KPESTRPLDQVRTEIVETLKRQKAEQQTRVDAEKILAELKQGK---DEALKAAGLSFGEA 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKV--GPVQ 585
++ + G +F+ P + + V+ + + +
Sbjct: 531 KTMSSISQ-----GDATAEAIFAMPHPEKDKPSYAITQDQAGNVVLVALDSVTPHQLNDE 585
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K +F S + Q L DS+++ L+S+ + + + ++
Sbjct: 586 QKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAQEQ 625
>gi|330011537|ref|ZP_08307123.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. MS 92-3]
gi|328534154|gb|EGF60789.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. MS 92-3]
Length = 639
Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats.
Identities = 119/640 (18%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+
Sbjct: 16 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLI-GGGKNYAAKVNGQEIGRGQFENAV 74
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + + +++L+ L+ + LDQ+ ++GL +V
Sbjct: 75 ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 134
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++ F + KF + F +A+ G+ +Y L+ ++ G
Sbjct: 135 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 193
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
DQ + R V +N + A S+ + ++++ + + APE R+SYI
Sbjct: 194 ESDQLAALVSQQRVVREATINVNALAAKQTASDEEINVFWQQNQARFMAPEQFRVSYIKM 253
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ S+DE+Q+ Y+++K+++ P+ + + +A L+KG F
Sbjct: 254 DAASMQE--SASDDEIQSWYDQHKDQFTQPQRSRYSVIQTKTEADAKAVLAELQKGADFA 311
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G L D+ L +KG + VI S G+++A +
Sbjct: 312 TLAKEKSTDIISARNGGDMGWMEDASTV-PELKDAG--LKEKGQLSGVIKSSVGFLVARL 368
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ +V+ DIA +++ KA + +++ + + + ++ ++ +
Sbjct: 369 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLASAAQVAGL 426
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + G+D +E+ P + + V P S + + ++I E
Sbjct: 427 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 486
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L EV V K K ++ +A++L+ + K G S
Sbjct: 487 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKLLAALKDGKG--DEAMKAAGLSFGAP 544
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG----LSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ G V+ + K G P +
Sbjct: 545 QTLSRTGQD------PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGSMPEE 598
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + +++++ L+ + + D++ Q+
Sbjct: 599 QKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 638
>gi|126173842|ref|YP_001049991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS155]
gi|125997047|gb|ABN61122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS155]
Length = 621
Score = 269 bits (687), Expect = 9e-70, Method: Composition-based stats.
Identities = 113/636 (17%), Positives = 233/636 (36%), Gaps = 41/636 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR S+ +AK LV++ + F G+S L + V + + ++
Sbjct: 1 MLEKIRDGSQGLIAKGILVLVILSFAFAGVSSYL-GSTTDVPAAEVNGDIITKAELEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++++ + + +L+ LV+ +DQ + +GL ++
Sbjct: 60 QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P F D KF +D + + L + G + + D ++R + VG
Sbjct: 120 AVKTEPAFQT-DGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q + R V Y+V+++ A A ++ + +++ + + +PE + Y+
Sbjct: 179 EAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSL 290
+ + K +S++E QA YE++K +Y S E R ++ + +A++ + L
Sbjct: 239 NAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAEDLAKQL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G F LA+ L F + D + D+ KG + V+ F
Sbjct: 299 DSGADFADLAKANSDDTLSAEQGGKLDWFEPGVM-DPAF-DAALFALNKGQHSAVVKTDF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEIS 405
G+ I + +++P TV F +VK I Q++ KA ++ +L + ++ E +
Sbjct: 357 GFHIIKLLDVQPGVTVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVPDTLSETA 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + PL + + + L +
Sbjct: 417 KAVGVDIKTTPLFSRDNVPAALNKPDLV-----KAAFSETVMLKGLNSEVIELEPNHVVV 471
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++KE A L EV ++ + K + E +KA +L+ + + + K
Sbjct: 472 VRVKEHHDAGTLALAEVKANIAERLKQDQANEAARAKAQELMAQVKAGATDLGLVAKAK- 530
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVGP 583
+ + + + F P G Y V +
Sbjct: 531 -----------LGRGAQDVDAAIVGKAFQMPTPSTSPVVDTVGLANGYAVVALDKVNAAE 579
Query: 584 ---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ + L ++ +I LK+ V
Sbjct: 580 GVSDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 615
>gi|170767918|ref|ZP_02902371.1| peptidylprolyl isomerase [Escherichia albertii TW07627]
gi|170123406|gb|EDS92337.1| peptidylprolyl isomerase [Escherichia albertii TW07627]
Length = 623
Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats.
Identities = 123/640 (19%), Positives = 260/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDRYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF + + S L + G++ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNSRYNSILNQMGMSADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A + + ++E+ K+N+ PE R+SYI
Sbjct: 179 ETDELAALVAQQRVVREATIDVNALAAKQAVTEQEIASYYEQNKNNFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +S+ ++Q+ Y++++E++ P+ + + EA L KG F
Sbjct: 239 --DAATMQQPVSDADIQSYYDQHQEQFTQPQRMRYSIIQTKTEDEAKAVLAELNKGGDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G +PD L +KG + VI S G++I +
Sbjct: 297 ALAKEKSADIISARNGGDMGWLEDATVPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ S EV+ DIA +++ KA + +++ + + T + ++ E+ +
Sbjct: 354 DDVQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ KD +E+ P + + V P + + ++I E
Sbjct: 412 KATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L +V VK + K ++ A +L++E K GK +
Sbjct: 472 KPETVKPLADVQEQVKAMVQHNKAEQQAKLDAEKLLVEL-KAGKGAEAMQAAA-LKFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQ 585
+NR + F+ P+ + + V+ + K G P +
Sbjct: 530 KTLNRSGQD------PISQAAFALPLPTQDKPSYGMATDMQGNVVLLALDEVKQGSMPEE 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 584 QKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|217973906|ref|YP_002358657.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS223]
gi|217499041|gb|ACK47234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS223]
Length = 621
Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats.
Identities = 113/636 (17%), Positives = 233/636 (36%), Gaps = 41/636 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR S+ +AK LV++ + F G+S L + V + + ++
Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL-GSTTDVPAAEVNGDIITKAELEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++++ + + +L+ LV+ +DQ + +GL ++
Sbjct: 60 QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P F D KF +D + + L + G + + D ++R + VG
Sbjct: 120 AVKTEPAFQT-DGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q + R V Y+V+++ A A ++ + +++ + + +PE + Y+
Sbjct: 179 EAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSL 290
+ + K +S++E QA YE++K +Y S E R ++ + +A++ + L
Sbjct: 239 NAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAEDLAKQL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G F LA+ L F + D + D+ KG + V+ F
Sbjct: 299 DSGADFADLAKANSDDTLSAEQGGKLDWFEPGVM-DPAF-DAALFALNKGQHSAVVKTDF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEIS 405
G+ I + +++P TV F +VK I Q++ KA ++ +L + ++ E +
Sbjct: 357 GFHIIKLLDVQPGVTVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVPDTLSETA 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + PL + + + L +
Sbjct: 417 KAVGVDIKTTPLFSRDNVPAALNKPDLV-----KAAFSETVMLKGLNSEVIELEPNHVVV 471
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++KE A L EV ++ + K + E +KA +L+ + + + K
Sbjct: 472 VRVKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQELMAQVKAGATDLGLVAKAK- 530
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVGP 583
+ + + + F P G Y V +
Sbjct: 531 -----------LGRGAQDVDAAIVGKAFQMPTPSTSPVVDTVGLANGYAVVALDKINAAE 579
Query: 584 ---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ + L ++ +I LK+ V
Sbjct: 580 GVSDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 615
>gi|304409715|ref|ZP_07391335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS183]
gi|307304071|ref|ZP_07583824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
BA175]
gi|304352233|gb|EFM16631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS183]
gi|306912969|gb|EFN43392.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
BA175]
Length = 621
Score = 269 bits (685), Expect = 2e-69, Method: Composition-based stats.
Identities = 116/635 (18%), Positives = 235/635 (37%), Gaps = 39/635 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR S+ +AK LV++ + F G+S L + V + + ++
Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL-GSTTDVPAAEVNGDIITKAELEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++++ + + +L+ LV+ +DQ + +GL ++
Sbjct: 60 QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P F D KF +D + + L + G + + D ++R + VG
Sbjct: 120 AVKTEPAFQT-DGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q + R V Y+V+++ A A ++ + +++ + + +PE + Y+
Sbjct: 179 EAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSL 290
+ + K +S++E QA YE++K +Y S E R ++ + +A++ + L
Sbjct: 239 NAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAEDLAKQL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G F LA+ L F + D + D+ KG + V+ F
Sbjct: 299 DSGADFADLAKANSDDTLSAEQGGKLDWFEPGVM-DPAF-DAALFALNKGQHSAVVKTDF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ I + +++P TV F +VK I Q++ KA ++ +L + D +S
Sbjct: 357 GFHIIKLLDVQPGVTVPFADVKAKIVAQLQDKKAVDQFYSLQSKLAD--TSYEVPDTLSE 414
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
K V +D+ +D + + + L + V
Sbjct: 415 TAKAVGVDIKATPLFSRDNVPAALNKPDLVKAAFSETV--MLKGLNSEVIELEPNHVVVV 472
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++KE A L EV ++ + K + E +KA +L+ + + + K
Sbjct: 473 RVKEHHDAGTLALAEVKANITERLKQDQANEAARAKAQELMAQVKAGATDLGLVAKAK-- 530
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVGP- 583
+ + + + F P G Y V +
Sbjct: 531 ----------LGRGAQDVDAAIVGKAFQMPTPSTSPVVDTVGLANGYAVVALDKVNAAEG 580
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ + L ++ +I LK+ V
Sbjct: 581 VSDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 615
>gi|153000126|ref|YP_001365807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS185]
gi|160874748|ref|YP_001554064.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS195]
gi|151364744|gb|ABS07744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS185]
gi|160860270|gb|ABX48804.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS195]
gi|315266990|gb|ADT93843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS678]
Length = 621
Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats.
Identities = 113/636 (17%), Positives = 233/636 (36%), Gaps = 41/636 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR S+ +AK LV++ + F G+S L + V + + ++
Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL-GSTTDVPAAEVNGDIITKAELEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++++ + + +L+ LV+ +DQ + +GL ++
Sbjct: 60 QSERSRMEQQLGEMFAALSADEKYLQSIKQSVLERLVADKLIDQAAKAMGLRVSDEQIIA 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P F D KF +D + + L + G + + D ++R + VG
Sbjct: 120 AVKTEPAFQT-DGKFDNDRYQAILRQLGYQPQAFRDMMRVDMTRRQLTAALVGTEFVLAG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q + R V Y+V+++ A A ++ + +++ + + +PE + Y+
Sbjct: 179 EAKQLAELQGQTRDVRYLVVDSAPFLATAVVTDEQVKNYYDANQGQFMSPEMVSLEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSL 290
+ + K +S++E QA YE++K +Y S E R ++ + +A++ + L
Sbjct: 239 NAADFAKNNPVSDEEAQAYYEEHKAQYVSNEKRLAAHILVMPGSDEAAAKAKAEDLAKQL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G F LA+ L F + D + D+ KG + V+ F
Sbjct: 299 DSGADFADLAKANSDDTLSAEQGGKLDWFEPGVM-DPAF-DAALFALNKGQHSAVVKTDF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEIS 405
G+ I + +++P TV F +VK I Q++ KA ++ +L + ++ E +
Sbjct: 357 GFHIIKLLDVQPGVTVPFADVKAKIVAQLQDKKAVDQFYSLQSKLADTSYEVPDTLSETA 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + PL + + + L +
Sbjct: 417 KAVGVDIKTTPLFSRDNVPAALNKPDLV-----KAAFSETVMLKGLNSEVIELEPNHVVV 471
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++KE A L EV ++ + K + E +KA +L+ + + + K
Sbjct: 472 VRVKEHHDAGTLALAEVKANIAERLKQDQANEAARAKAQELMAQVKAGAMDLGLVAKAK- 530
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVGP 583
+ + + + F P G Y V +
Sbjct: 531 -----------LGRGAQDVDAAIVGKAFQMPTPSTSPVVDTVGLANGYAVVALDKVNAAE 579
Query: 584 ---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ + L ++ +I LK+ V
Sbjct: 580 GVSDELVNALKQRLNAQYSEADYRGLIDSLKANAKV 615
>gi|298529972|ref|ZP_07017374.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509346|gb|EFI33250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 628
Score = 268 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 102/646 (15%), Positives = 249/646 (38%), Gaps = 39/646 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+I+R+ +++W+ K+ V+ + F+ WG+ F+ T+ + + + F ++
Sbjct: 1 MLDIMRRNAQSWIVKVLFGVIVIVFVFWGVGS--FTEDDRETLAVINGEPISIQEFARAY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + ++ ++ E RS+ L +++ + +V+ L Q +GL ++ EI
Sbjct: 59 ESTAHSMREQ-NPGLSREDMRSMQLREQVFNQMVNSKLLVQKASQLGLSVSREQLQQEIT 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F ++N+F + L + ++ + L + +P+ +
Sbjct: 118 SLPAFFDEENRFDPQRYEQVLRSHRLTPSQFERDFRHNLLMEKMEEYVSLPAKPNEHEVQ 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + +DY + + + ++++ +D + PE RI+++
Sbjct: 178 EFFNYVRSQAKIDYKLFEADEFHDKVSITEEQIKEYYQDNQDRFMEPEKIRIAHLELSPD 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQ 288
+S++E++A ++ ++ ++ PE ++ +++A E
Sbjct: 238 ALAGAQRVSSEEVEAYFQSHQSEFEQPEEVKARHILVEVEEDAPELEQEQARERIEQILA 297
Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L+ G+ F +LA E + S LG F + + + + G+ + +
Sbjct: 298 ELEMGQSFEELAREHSQCPSAAEGGDLGRFGRGEMVEP--FEEAAFDLTPGEVSSPVQTR 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + V + + +EV+ +I ++ KA++++ + + E + G S+ E +
Sbjct: 356 FGWHLIKVEEYVEAASPDLEEVEDEIRRKIGREKAADQIGDYADDVLEIVVAGGSLKEAA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ +L D+ ++ +E+ LF + + + D Y++
Sbjct: 416 DSLGL---ELKETDYFSREQGPEELELPGEALDRLFNLME----GEVTESPIMLDNGYLY 468
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ AR +LE+V ++ ++ K+ E A + + + +
Sbjct: 469 AEKTGVREARSLELEKVEDEIVEELTRQKSMEMAEKAAGDKLDKI------LDEAVEPEE 522
Query: 526 ASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP- 583
L+T+ +R Q F Y+V +V
Sbjct: 523 LDLVTSEPFDRQGFIPGLGMNPQLAEQAFVQDTGSWLPEVKSTDAGYIVARVNEHIEPDM 582
Query: 584 ---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT-VHDNLIQR 625
QEKD+++ QM + + +S I L+S+ + V ++
Sbjct: 583 EQFEQEKDQWMQSYAQMQRQQVFNSYITMLRSRADINMVRPEVLDN 628
>gi|295096773|emb|CBK85863.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 623
Score = 268 bits (683), Expect = 2e-69, Method: Composition-based stats.
Identities = 115/633 (18%), Positives = 253/633 (39%), Gaps = 33/633 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L G++ V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSSYLI-GGGANYAAKVNGQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L ++ L+ L+ A LDQ+ + +GL +V
Sbjct: 60 AGERNRMQQQLGDQYSELAANEGYMKNLRQQTLNRLIDEALLDQYAKSLGLGISDEQVKK 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + F + KF + + S + + G+ +Y L+ ++ VG
Sbjct: 120 AIFSTQAFQS-NGKFDNARYNSIVNQMGMTADQYAQALRNQLTTQQLINAVVGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + R V ++ + A S+A + ++E+ K+N+ +PE R+SYI
Sbjct: 179 ETEELAALVAQQRVVREATIDVNALAAKQQVSDAEVNAYYEQNKNNFISPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ ++ E+Q+ Y+++++++ P+ + + EA L KG F
Sbjct: 239 DAAAMQE--NATDAEIQSYYDQHQDQFTQPQRNRYSVIQTKTEAEAKAVLDELNKGADFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+ + + +G + PD L +KG + VI S G+++A +
Sbjct: 297 TLAKAKSTDIISAKNGGDMGWLEESTTPDEL---KNAGLKEKGQLSGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I + T +V+ DIA +++ KA + +++ + + + ++ E+ +
Sbjct: 354 DDIVAAKTKPLADVRDDIAAKVKQEKALDAFYALQQKVSDAASN--DNESLAGAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + +E+ P + + V P S + + +++ E
Sbjct: 412 KAVETGWFSHENLPEELNFKPVSDAIFNGGLVGENGTPGSNSDIITVDGDRAFVLRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L EV V K K A++ A +++ + D K G S
Sbjct: 472 KAEAVKPLAEVKDQVVALVKHNKAAQQAKLDAEKILADLKAGKN---DALKAAGLSFGEA 528
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQ 585
++R + F + V + + V+ + K G P
Sbjct: 529 KTLSRTGQD------PVSQAAFGLSLPAKDKPVYGTTTDMQGNVVLLALDEVKAGTLPDA 582
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+K + +TQ + +++++ L+ + + +
Sbjct: 583 QKKAMVQGITQNNAQIAFEAMMSNLRKEAKIKL 615
>gi|303249065|ref|ZP_07335308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
fructosovorans JJ]
gi|302489530|gb|EFL49472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
fructosovorans JJ]
Length = 654
Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats.
Identities = 101/645 (15%), Positives = 238/645 (36%), Gaps = 33/645 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RK +++W KI ++ + F+ WG+ F ++ + ++ Q V + ++
Sbjct: 1 MLDPMRKYAQSWGIKIVFGLIILVFVFWGVGS--FRGDKATVLATIDGQPVLIKDYEKAY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+E + + + + + G ++ N+V+ L++ + +G+ + EIA
Sbjct: 59 -REAQRLVKNKNPDITDKELQDGGFRWQVFSNMVTSRLLEEQAKKLGVSVSADELRAEIA 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F K KF + + L + E+ + + L + G S
Sbjct: 118 KIPAFQDKSKKFDAKRYENLLRANDVTPGEFEADFRQNLLLEKLAGFVSLPASVSEAEAR 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
F E + YI+ P++ + ++E KD + P +I Y+ F
Sbjct: 178 SIFDFMREQAVIKYIMFKAEDFDKGITPTDEQIKAYYEARKDQFATPAKIKIDYVEFTPK 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD------------EAFQ 288
+ ++++ +++A Y+ N++KY PE V + +A +
Sbjct: 238 ALAQPDKVTDADIEAYYKANQKKYARPEQVKVRHFLIMLPADAPKSAVDAATAKLKDIAA 297
Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHG 344
LK G F L + + K +P + K G+ + +
Sbjct: 298 KLKAGAAFASLLPKNPNNADGLIGEDWAWLPKGSLPKEFGPFEEKAFSLKNGEISEPVRT 357
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+ G + + + EVK DI ++ KAS+K+ + +++ +A G + +
Sbjct: 358 ALGLHLIQAGERQAAGERPLSEVKDDIREELAERKASDKLTQSLDNMQDKIASGVDLGKA 417
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ EK+ + +Q L +F D ++ DG ++
Sbjct: 418 AADEKLPVKSADFFSK------DNPPTDLGLSDQALGVLFSMKKGAVSDTPLSTQDG-FL 470
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
++ + PA + L++V +K+ + + +KA++ + + + +
Sbjct: 471 LARVSDIQPAGFQSLDDVKEAIKQRLIADEAQKRARAKADE-TAKAMETPAGEQKVLAEY 529
Query: 525 GASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ T+ +R + F YV+ +
Sbjct: 530 KDKIQTSQPFSRQGFIPGLGMAPVLVQTAFEAKGPGWFKAAYGVTGGYVLASLDKKIPAD 589
Query: 584 ----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV-HDNLI 623
+EKD++++ L+Q +L + ++ ++ V + + +++
Sbjct: 590 PALWEKEKDRWLATLSQSKQSELFKAYLSTVQQGAKVEIVNQDIL 634
>gi|290510114|ref|ZP_06549484.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. 1_1_55]
gi|289776830|gb|EFD84828.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella sp. 1_1_55]
Length = 624
Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats.
Identities = 118/640 (18%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+
Sbjct: 1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLI-GGGKNYAAKVNGQEIGRGQFENAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + + +++L+ L+ + LDQ+ ++GL +V
Sbjct: 60 ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++ F + KF + F +A+ G+ +Y L+ ++ G
Sbjct: 120 AIFQTQAFQT-NGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
DQ + R V +N + A S+ + ++++ + + APE R+SYI
Sbjct: 179 ESDQLAALVSQQRVVREATINVNALAAKQTVSDEEINAFWQQNQARFMAPEQFRVSYIKM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG F
Sbjct: 239 DAASMQE--SASDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L D+ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWMEEASTV-PELKDAG--LNEKGQLSGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ +V+ DIA +++ KA + +++ + + + ++ ++ +
Sbjct: 354 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAAQVAGL 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + G+D +E+ P + + V P S + + ++I E
Sbjct: 412 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L EV V K K ++ A++L+ + K G S
Sbjct: 472 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKLLAALKDGKG--DEAMKAAGLSFGAP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG----LSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ G V+ + K G P +
Sbjct: 530 QTLSRTGQD------PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGNMPEE 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + +++++ L+ + + D++ Q+
Sbjct: 584 QKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623
>gi|206578972|ref|YP_002240079.1| peptidylprolyl isomerase [Klebsiella pneumoniae 342]
gi|206568030|gb|ACI09806.1| peptidylprolyl isomerase [Klebsiella pneumoniae 342]
Length = 624
Score = 267 bits (680), Expect = 5e-69, Method: Composition-based stats.
Identities = 118/640 (18%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+
Sbjct: 1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLI-GGGKNYAAKVNGQEIGRGQFENAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + + +++L+ L+ + LDQ+ ++GL +V
Sbjct: 60 ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++ F + KF + F +A+ G+ +Y L+ ++ G
Sbjct: 120 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
DQ + R V +N + A S+ + ++++ + + APE R+SYI
Sbjct: 179 ESDQLAALVSQQRVVREATINVNTLAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG F
Sbjct: 239 DAASMQE--SASDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L D+ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWMEEASTV-PELKDAG--LKEKGQLSGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ +V+ DIA +++ KA + +++ + + + ++ ++ +
Sbjct: 354 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAAQVAGL 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + G+D +E+ P + + V P S + + ++I E
Sbjct: 412 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L EV V K K ++ A++L+ + K G S
Sbjct: 472 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKLLAALKDGKG--DEAMKAAGLSFGAP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG----LSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ G V+ + K G P +
Sbjct: 530 QTLSRTGQD------PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGNMPEE 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + +++++ L+ + + D++ Q+
Sbjct: 584 QKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623
>gi|288936830|ref|YP_003440889.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
At-22]
gi|288891539|gb|ADC59857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Klebsiella variicola
At-22]
Length = 624
Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats.
Identities = 118/640 (18%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+
Sbjct: 1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLI-GGGKNYAAKVNGQEIGRGQFENAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + + +++L+ L+ + LDQ+ ++GL +V
Sbjct: 60 ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++ F + KF + F +A+ G+ +Y L+ ++ G
Sbjct: 120 AIFQTQAFQT-NGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
DQ + R V +N + A S+ + ++++ + + APE R+SYI
Sbjct: 179 ESDQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG F
Sbjct: 239 DAASMQE--SASDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L D+ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWMEEASTV-PELKDAG--LKEKGQLSGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ +V+ DIA +++ KA + +++ + + + ++ ++ +
Sbjct: 354 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAAQVAGL 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + G+D +E+ P + + V P S + + ++I E
Sbjct: 412 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L EV V K K ++ A++L+ + K G S
Sbjct: 472 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLDADKLLAALKDGKG--DEAMKAAGLSFGAP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG----LSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ G V+ + K G P +
Sbjct: 530 QTLSRTGQD------PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGNMPEE 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + +++++ L+ + + D++ Q+
Sbjct: 584 QKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623
>gi|294635328|ref|ZP_06713825.1| peptidylprolyl cis-trans isomerase D [Edwardsiella tarda ATCC
23685]
gi|291091304|gb|EFE23865.1| peptidylprolyl cis-trans isomerase D [Edwardsiella tarda ATCC
23685]
Length = 626
Score = 266 bits (679), Expect = 7e-69, Method: Composition-based stats.
Identities = 108/637 (16%), Positives = 244/637 (38%), Gaps = 29/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V K+ L ++ + F++ G+ + L SG V Q++ + +
Sbjct: 1 MMDNLRAAANHVVLKVILALIIISFVLTGVGNYLIGGSG-DYAAKVDGQEISRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G + L +++L ++ LDQ+ + + L +V
Sbjct: 60 QNERSRLQQQLGDQFSVLAGNEGYMKELRQQVLSRMIDDVLLDQYAKKLNLAISDAQVKE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F ++ F + ++ +AR G+ Y + L ++ F
Sbjct: 120 AIRTLPYFQTDNH-FDNAKYLEMVARLGLTPDSYAQLMRQQLVTQQLIQGFTATGFTLPS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R ++ ++ + + S+A L +++++++++ APE R+SYI
Sbjct: 179 EVSSLAALTMQQRLINLATIDIKQLMPQQKVSDAELQGYYQQHQNSFIAPEAVRVSYIEM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D K+ +S+ E+ A Y+++K + PE + ++ EA + L KG F
Sbjct: 239 DAAAINDKMTVSDAEISAYYDQHKRSFTQPERNKYSVIQVKSEAEAKAIAEQLAKGADFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E + LG E P L L KG + I S GY+I +
Sbjct: 299 TLAKEHSSDIISRKNGGELGWMEPESTPQEILNAK---LTTKGQVSAPIASSVGYLIVRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ EV+ IA++++ K+ + +++ + + D ++ E+
Sbjct: 356 DDMQPAVIKPLSEVRAAIADKVKQQKSLDAFYAMQQKVSDA--ATSDNDSLAGAEEAAGA 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D + P + + P S +++ +++
Sbjct: 414 KATETAWFTRDSVPAALNFKPVVQAIFDGSLFGENGTPGSNSDVISVEGDRAFVLRVSAH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + ++V V + K K + S+ +L+ + G S
Sbjct: 474 KPEAVKPFDQVRDQVTELLKRQKAIAQARSEGEKLLAALQAGKG--DAALQAAGLSFGAE 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGP--VQ 585
+ R ++ + VF+ P V + + V+ ++ K G +
Sbjct: 532 QTLTRASDD-----RQLVDTVFALPHPQANKPVYGLSEDRQDNIVLIRLNAVKAGQLTAE 586
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
E+ F S + ++++ L++ + +
Sbjct: 587 EQKAFASQMLTGETGITFEALMDNLRANGKIKLGAAA 623
>gi|152968976|ref|YP_001334085.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238893390|ref|YP_002918124.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Klebsiella
pneumoniae NTUH-K2044]
gi|150953825|gb|ABR75855.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238545706|dbj|BAH62057.1| peptidyl-prolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 624
Score = 266 bits (678), Expect = 9e-69, Method: Composition-based stats.
Identities = 118/640 (18%), Positives = 261/640 (40%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+
Sbjct: 1 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLI-GGGKNYAAKVNGQEIGRGQFENAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + + +++L+ L+ + LDQ+ ++GL +V
Sbjct: 60 ASERNRMQQQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++ F + KF + F +A+ G+ +Y L+ ++ G
Sbjct: 120 AIFQTQAFQT-NGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
DQ + R V +N + A S+ + ++++ + + APE R+SYI
Sbjct: 179 ESDQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG F
Sbjct: 239 DAASMQE--SASDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G L D+ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWMEDASTV-PELKDAG--LKEKGQLSGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ +V+ DIA +++ KA + +++ + + + ++ ++ +
Sbjct: 354 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLASAAQVAGL 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + G+D +E+ P + + V P S + + ++I E
Sbjct: 412 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L EV V K K ++ +A++L+ + K G S
Sbjct: 472 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKLLAALKDGKG--DEAMKAAGLSFGAP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG----LSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ G V+ + K G P +
Sbjct: 530 QTLSRTGQD------PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGSMPEE 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + +++++ L+ + + D++ Q+
Sbjct: 584 QKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 623
>gi|120599410|ref|YP_963984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
W3-18-1]
gi|146292594|ref|YP_001183018.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
putrefaciens CN-32]
gi|120559503|gb|ABM25430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
W3-18-1]
gi|145564284|gb|ABP75219.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
putrefaciens CN-32]
gi|319425896|gb|ADV53970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
putrefaciens 200]
Length = 618
Score = 266 bits (678), Expect = 1e-68, Method: Composition-based stats.
Identities = 106/633 (16%), Positives = 233/633 (36%), Gaps = 37/633 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR S+ +AK LV++ + F G+S L + V K+ + ++
Sbjct: 1 MLEKIRDGSQGVIAKSILVLVILSFAFAGVSSYL-GSTTDVPAAEVNGDKITKAELEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++++ + + +L+ LV+ +DQ +GL ++
Sbjct: 60 QSERSRMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAASTMGLRVSDEQIIT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF ++ + + L + G + + + ++R + VG
Sbjct: 120 AIKLEPAFQT-DGKFDNERYQAILRQLGYQPQSFRNMMRVDMTRRQLTAALVGTEFVLPS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q + R + Y+V+++ A A ++ + +++ + + +PE + Y+
Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLANATVTDEQVKNYYDANQGQFMSPEQVSLEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----FQSLKK 292
+ + K ++++E QA Y+++K +Y + E R ++ ++ + L
Sbjct: 239 NAADFAKNSPVTDEEAQAYYDEHKTQYLANEKRLAAHILINADQDDAATKAADLAKQLDN 298
Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F +LA+ L F + D+ KG+ + V+ FGY
Sbjct: 299 GADFAELAKAHSDDRLSAEQGGKLEWFEPGVM--EPTFDAALFALNKGEHSAVVKTGFGY 356
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I + +++ TV F +VK I Q++ KA ++ +L + D ++
Sbjct: 357 HIIKLLDVQAGATVPFADVKAKIVAQLQDKKAVDQFYSLQSKLAD--TSYEVPDTLAETA 414
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
K++ + + +D + + + + L + +++
Sbjct: 415 KVLGVSIKTTPLFSRDDAPEGLNKPDLVKAAFSDTVKLK--GLNSEVIELEPNHVVVIRV 472
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
KE A L EV ++ + K + E +KA +L+ + + + K
Sbjct: 473 KEHHDAGTLALAEVKANITERLKQDQANEAARAKAQELMTQVKAAATDLGLVSK------ 526
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVGP--- 583
++ + + + F P G Y V +
Sbjct: 527 ------VKLGRGEQNVDAAIVGKAFQMPTPSSTPVVDIVGLANGYAVIALDKVNAAEGVS 580
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ + L ++ +I LK+ V
Sbjct: 581 DELVNALKQRLNAQYSEADYRGLIDSLKANAKV 613
>gi|117921098|ref|YP_870290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
ANA-3]
gi|117613430|gb|ABK48884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
ANA-3]
Length = 621
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 114/635 (17%), Positives = 240/635 (37%), Gaps = 39/635 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR S+ +AK LV++ + F G+S L V K+ + ++
Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL-GSKSDVPAAEVNGDKITKAELEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++++ + + +L+ LV+ +DQ +GL ++
Sbjct: 60 QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF +D + + L + G + + ++R + VG
Sbjct: 120 AIKSEPAFQT-DGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q + R + Y+V+++ A A ++ + +++ + + +PE + Y+
Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-------FPNQKEADEAFQSL 290
+ + K +++++E QA Y+++K +Y S E R ++ + +A++ + L
Sbjct: 239 NAADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAAAKAKAEDLAKQL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G F +LA+ + L F + D S ++F+L K G + V+ F
Sbjct: 299 DNGADFAELAKANSEDTLSAEQGGKLDWFEPGVM-DPSFDTALFALQK-GQHSAVVKTDF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ I + +++P TV F +VK I Q++ KA ++ +L + D ++
Sbjct: 357 GFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQFYSLQSKLAD--TSYEVPDTLAE 414
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
K+V +++ +D + + + L + +
Sbjct: 415 TAKVVGVEIKATPMFSRDDVPTALNKPDVVKAAFSDTV--LRQGLNSEVIELEPNHVVVI 472
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++KE A L EV D+ + K + E +KA +L+ + + K
Sbjct: 473 RMKEHHDAGTMPLAEVKADIAERLKQDQANEAARAKAQELMTQVKAGATDVSLTAK---- 528
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVGP- 583
++ + + + F P G Y V +
Sbjct: 529 --------TKLGRGAQDVDAAIVGKAFQMPTPTATPVVDTVGLANGYAVIALDKVNAAES 580
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ + L ++ +I LK+ V
Sbjct: 581 VSDELVNALKQRLNAQYSEADYRGLIESLKANAKV 615
>gi|113970826|ref|YP_734619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
gi|113885510|gb|ABI39562.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
Length = 621
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 112/636 (17%), Positives = 237/636 (37%), Gaps = 39/636 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR S+ +AK LV++ + F G+S L V K+ + ++
Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL-GSQSDVPAAEVNGDKITKAELEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++++ + + +L+ LV+ +DQ +GL ++
Sbjct: 60 QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIA 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF +D + + L + G + + ++R + VG
Sbjct: 120 AIKSEPAFQT-DGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q + R + Y+V+++ A A ++ + +++ + + +PE + Y+
Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSL 290
+ + K +++++E QA Y+++K +Y S E R ++ + +A++ + L
Sbjct: 239 NSADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAAAKAKAEDLAKQL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G F +LA+ + L F + D S ++ KKG+ + V+ F
Sbjct: 299 DNGADFAELAKANSEDTLSAEQGGKLDWFEPGVM-DPSFDTAL-FALKKGEHSAVVKTDF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ I + +++P TV F +VK I Q++ KA ++ +L + D ++
Sbjct: 357 GFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQFYSLQSKLAD--TSYEVPDTLAE 414
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
K+V +++ +D + + + L + +
Sbjct: 415 TAKVVGVEIKTTPLFSRDDVPAALNKPDVVKAAFSDTV--LRQGLNSEVLELEPNHVVVI 472
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++KE A L EV D+ K + E +KA +L+ + + K
Sbjct: 473 RMKEHHDAGTMPLAEVKADISDRLKQDQANEAARAKAQELMTQVKAGAADVTLTAKAK-- 530
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVGP- 583
+ + + + F P G Y V +
Sbjct: 531 ----------LGRGAQDVDAAIVGKAFQMPTPSATPVVDTVGLANGYAVIALDKVNAAES 580
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L ++ +I LK+ +
Sbjct: 581 VSDELVNALKQRLNAQYSEADYRGLIESLKANAKID 616
>gi|311280662|ref|YP_003942893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae
SCF1]
gi|308749857|gb|ADO49609.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter cloacae
SCF1]
Length = 624
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 124/640 (19%), Positives = 264/640 (41%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L ++ V Q++ S F N+
Sbjct: 1 MMDSLRTAANSVVLKIIFGIIIVSFILTGVSSYLI-GGNNTYAAKVNSQEIGRSQFENAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ + +GL +V
Sbjct: 60 ASERNRMQQQLGDRFSELAANENYMKTLRQQVLNRLIDEALLDQYAKHLGLAISDQQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++ F + KF +D F +++ G+ +Y L ++ VG
Sbjct: 120 AIFQTQAFQS-NGKFDNDRFNGIVSQMGMTADQYAQALRNQLETQQLINAIVGTDFMLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+Q + R V +N + A S+ ++ ++E++K+ + +PE R+SYI
Sbjct: 179 ETEQLATLVSQQRIVREATINVDALAAKQQVSDQEISSYYEQHKNEFVSPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ S+ ++Q+ Y++++E++ PE + + +A +L KG F
Sbjct: 239 DAAAMQE--TASDSDIQSYYDQHQEQFTQPERVRYSVIQTKTEADAKAVLDALSKGADFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G PD L +KG + VI S G+++A +
Sbjct: 297 ALAKEKSADIISAKNGGDMGWLEASTTPDEL---KNAGLKEKGQLSGVITSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDVQPAKEKPLAEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGM 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ G+D E+ P + + V P S + + ++I E
Sbjct: 412 KAVETGWFGRDSLPSELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L +V V K K ++ A++L+ E + + K G S
Sbjct: 472 KAEAVKPLADVKAQVTDIVKHTKAEQQAKLDADKLLAELNAGKG--DEAMKAAGLSFGPA 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG----LSYVVFKVTNSKVG--PVQ 585
++R + FS P+ G + V+ + K G P
Sbjct: 530 TTLSRTGQD------PLSQTAFSLPLPQKDKPVYGVGSDMQGNVVLVSLDGVKDGTMPEA 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K ++ +TQ + +++++ L+ + + D + Q+
Sbjct: 584 QKKAMVAGITQNNAQIAFEAMMSNLRKDAKIKLGDIVTQQ 623
>gi|261822503|ref|YP_003260609.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Pectobacterium
wasabiae WPP163]
gi|261606516|gb|ACX89002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pectobacterium
wasabiae WPP163]
Length = 627
Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats.
Identities = 117/639 (18%), Positives = 248/639 (38%), Gaps = 30/639 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ +
Sbjct: 1 MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSG-DYAAKVNGQEITRGQLEQAV 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + +G + S L K+ L L+ LDQ+ +GL ++
Sbjct: 60 QNERSRQQEALGENFSILASNDGYMQQLRKQALSQLIDETLLDQYANKLGLNISDEQIRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + F ++ ++ ++ R G+ Y K L+ ++ F
Sbjct: 120 AIFDVPAFQ-TNKHFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNTAFLLPQ 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + ++R V ++ ++ + ++++ K + APE ++SYI
Sbjct: 179 EIDNLVKLAAQDRVVRVATIDVAAKAKALTVADDEVQSYYDQNKGRFIAPEEFKVSYITL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++I + + YE+NK Y PE + + N+ +A +LK+G F
Sbjct: 239 DAASIMDNVKIDDKAINDFYEQNKNDYSQPERKKFSVIQVKNEADATSVLDALKQGGDFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + LG + D LA+KG + I S GY+I +
Sbjct: 299 TLAKEKSTDIISRRNGGDLGWMDENSTIDEL---KQAKLAEKGQVSSAIKSSVGYLIVRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P +V+ +IA +++ KA + +++ E + + ++ E+ I
Sbjct: 356 DDVQPQQVKPLSDVRAEIAEKVKHEKAQDGFYALQQKVSEAASN--DNESLASAEEAAGI 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D+ ++ + P + + + + + + ++I E
Sbjct: 414 KATQTDWFTREQVPAALNFKPVTQSIFNGALLGENGAAGNNSDVINVDGDRAFVLRITEY 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P R L++V T++ + K K ++ A +++ E + D K G S
Sbjct: 474 RPESTRPLDQVRTEIVEALKRQKAEQQARVDAEKILAELKQGK---DDALKAAGLSFGQA 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKV--GPVQ 585
++ + G +F+ P + + V+ + + +
Sbjct: 531 KTLSSISQ-----GDATAEAIFAMPHPEKDKPSYTITQDQAGNIVLAALDSVTPHQLNDE 585
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+K +F S + Q L DS+++ L+S+ + + + Q
Sbjct: 586 QKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAAQ 624
>gi|114048051|ref|YP_738601.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
gi|113889493|gb|ABI43544.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
Length = 621
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 112/636 (17%), Positives = 236/636 (37%), Gaps = 39/636 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR S+ +AK LV++ + F G+S L V K+ + ++
Sbjct: 1 MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYL-GSQSDVPAAEVNGDKITKAELEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++++ + + +L+ LV+ +DQ +GL ++
Sbjct: 60 QSERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIA 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF +D + + L + G + + ++R + VG
Sbjct: 120 AIKSEPAFQT-DGKFDNDRYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALVGTEFVLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q + R + Y+V+++ A A ++ + +++ + + +PE + Y+
Sbjct: 179 EAKQLAELQGQTRDIRYLVVDSAPFLANASVTDEQVKNYYDTNQGQFMSPEKVSLEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------DEAFQSL 290
+ + K +++++E QA Y+++K +Y S E R ++ + ++ + L
Sbjct: 239 NSADFAKDSKVTDEEAQAYYDEHKTQYVSNEKRLAAHILIGPGSDEAVAKAKAEDLAKQL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G F +LA+ + L F + D S ++F+L K G + V+ F
Sbjct: 299 DNGADFAELAKANSEDTLSAEQGGKLDWFEPGVM-DPSFDTALFALQK-GQHSAVVKTDF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ I + +++P TV F +VK I Q++ KA ++ +L + D ++
Sbjct: 357 GFHIIKLLDVQPGTTVPFADVKAKIVAQLQEKKAVDQFYSLQSKLAD--TSYEVPDTLAE 414
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
K+V +++ +D + + + L + +
Sbjct: 415 TAKVVGVEIKTTPLFSRDDVPAALNKPDVVKAAFSDTV--LRQGLNSEVLELEPNHVVVI 472
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++KE A L EV D+ K + E +KA +L+ + + K
Sbjct: 473 RMKEHHDAGTMPLAEVKADISDRLKQDQANEAARAKAQELMTQVKAGAADVTLTAKAK-- 530
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVGP- 583
+ + + + F P G Y V +
Sbjct: 531 ----------LGRGAQDVDAAIVGKAFQMPTPSATPVVDTVGLANGYAVIALDKVNAAES 580
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L ++ +I LK+ +
Sbjct: 581 VSDELVNALKQRLNAQYSEADYRGLIESLKANAKID 616
>gi|163793237|ref|ZP_02187213.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
BAL199]
gi|159181883|gb|EDP66395.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
BAL199]
Length = 626
Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats.
Identities = 121/638 (18%), Positives = 261/638 (40%), Gaps = 19/638 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK-VPFSSFINS 59
ML+ IR + KI V+L V F IWG+ D F +SVG +
Sbjct: 1 MLQFIRSKVTSIFVKILFVMLIVSFAIWGIGDVFFGNPAGKVAISVGDETRFTTQEVAGE 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
++ I G + E+A +G+ ++++N+V+ + + L RV +
Sbjct: 61 FETARRRI----GVPLTVEQAIQLGMLDQVMNNMVTEGLMIAATRSLDLSVGTDRVAEFV 116
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
F + +F + + LA G +E+E+I + +R ++ +
Sbjct: 117 RS--RFTDQTGQFDRARYQTTLANNGWSEEEFILRLRQDFARRQLIDALTAADAAPEAAV 174
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
D+ + E R + + + VP P +A L +FE K Y PEY+ I++
Sbjct: 175 DRVFAYRQERRIAEVVTIPAAAVPEPTAPDDAALNSYFEASKSGYEEPEYRSIAWAQVSP 234
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K ++I +++A Y++ ++ PE R V+Q++F + + A + G+ F+ +
Sbjct: 235 AAVAKTLDIPEGDVRAAYDERADQLAKPERREVQQILFETEDASKAAHARIAGGEDFVAV 294
Query: 300 AEEQGKSLSDI-SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
A++ + LG+ +++ +P + + + + FG+ + V +I+P
Sbjct: 295 AKDTTGADEAALDLGALARDGLP--TGTADAVFALAQNAVSEPVKSGFGWHLFRVRSIQP 352
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
TV+++E K I +++ +A + V E +LE+ LA G +++E ++ ++ + + +
Sbjct: 353 GTTVTYEEAKGRIRDELAHDRALDVVYETANKLEDALAGGATLEEAAKSLELPVLRITGL 412
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
G G++ +P + + DG + +++ E R
Sbjct: 413 SKTGALKSGEKAVDLPGGR--FLELAFDTPKDQQSGLGEGLDGQFFVLRVDEITAPRVPS 470
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
L+EV V DWK+ + E +A+ L E + G + D+ G + R
Sbjct: 471 LDEVRDRVLADWKSERRMEIAEERADSL-AEKVRGGGSLADLAAADGMPTAELPALTRST 529
Query: 539 NEN-KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISY 593
+ F + +F ++ + V ++ + + +
Sbjct: 530 RNAPQGFPNTLPATLFGIK-DVGGVAVTADDTQAAVVRLVRIEPADATAQANVRKAIATQ 588
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ Q DL++ ++A L++++ V + + + R + +
Sbjct: 589 MQQAAESDLIELLLADLRNRFKVVENKSSVLRLYETAQ 626
>gi|262042477|ref|ZP_06015636.1| peptidylprolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259040181|gb|EEW41293.1| peptidylprolyl cis-trans isomerase D [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 638
Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats.
Identities = 118/640 (18%), Positives = 261/640 (40%), Gaps = 33/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L G + V Q++ F N+
Sbjct: 16 MMDNLRTAANSVVLKIIFGIIIVSFILTGVSGYLI-GGGKNYAAKVNGQEIGRGQFENAV 74
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + + +++L+ L+ + LDQ+ ++GL +V
Sbjct: 75 ASERNRM-QQLGDQFSELAANENYMKTMRQQVLNRLIDESLLDQYARELGLSISDEQVKQ 133
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++ F + KF + F +A+ G+ +Y L+ ++ G
Sbjct: 134 AIFQTQAFQ-TNGKFDNQRFSGIVAQMGMTTDQYAQALRNQLTTQQLINAIAGTDFMLPG 192
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
DQ + R V +N + A S+ + ++++ + + APE R+SYI
Sbjct: 193 ESDQLAALVSQQRVVREATINVNALAAKQTASDEEINAFWQQNQARFMAPEQFRVSYIKM 252
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ S++E+Q+ Y+++K+++ P+ + + +A L+KG F
Sbjct: 253 DAASMQE--SASDEEIQSWYDQHKDQFTQPQRNRYSVIQTKTEADAKAVLAELQKGADFA 310
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G L D+ L +KG + VI S G+++A +
Sbjct: 311 TLAKEKSTDIISARNGGDMGWMEDASTV-PELKDAG--LKEKGQLSGVIKSSVGFLVARL 367
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ +V+ DIA +++ KA + +++ + + + ++ ++ +
Sbjct: 368 DDVQPAQVKPLADVRNDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLASAAQVAGL 425
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + G+D +E+ P + + V P S + + ++I E
Sbjct: 426 KVVETGWFGRDNLPEELNFKPVADAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRISEH 485
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L EV V K K ++ +A++L+ + K G S
Sbjct: 486 KAEAVKPLAEVKAQVSDIVKHNKAEQQAKLEADKLLAALKDGKG--DEAMKTAGLSFGAP 543
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG----LSYVVFKVTNSKVG--PVQ 585
++R + F+ P+ G V+ + K G P +
Sbjct: 544 QTLSRTGQD------PLSQLAFTLPLPQQGKPVYGVGSNMQGDVVLVALDEVKAGSMPEE 597
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + +++++ L+ + + D++ Q+
Sbjct: 598 QKKAMVQGITQNNAQIAFEALMSNLRKAAKIKLGDSIDQQ 637
>gi|50120091|ref|YP_049258.1| peptidyl-prolyl cis-trans isomerase [Pectobacterium atrosepticum
SCRI1043]
gi|49610617|emb|CAG74062.1| peptidyl-prolyl cis-trans isomerase D [Pectobacterium atrosepticum
SCRI1043]
Length = 626
Score = 263 bits (671), Expect = 6e-68, Method: Composition-based stats.
Identities = 116/640 (18%), Positives = 253/640 (39%), Gaps = 30/640 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ + +
Sbjct: 1 MMDNLRTAANNVVLKIILALIIASFVLTGVGDYLIGGSG-DYAAKVNGQEITRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + +G + S L ++ L L+ LDQ+ +GL ++
Sbjct: 60 QNERSRQQETLGENFSLLASNDGYMQQLRRQALSQLIDETLLDQYANKLGLNISDAQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F ++ ++ ++ R G+ Y K L+ ++ F
Sbjct: 120 AIFDVPAFQTNN-RFDNEKYLDQVRRLGVTPDMYAQMLRKQLTSQQLIRGFGNTAFLLPQ 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + ++R V ++ ++ + ++++ K N+ APE ++SYI
Sbjct: 179 EIDNLVKLAAQDRVVRVATIDIAAKAKAQTVADDEVQSYYDQNKGNFIAPEEFKVSYITL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D +++ + + YE+NK Y PE + + N+ EA SLK+G F
Sbjct: 239 DAASIMDSVKVDDKAINDFYEQNKNDYSQPERKKFSVIQVKNEAEAASVLDSLKQGGDFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + LG + + D L +KG + I S GY+I +
Sbjct: 299 ALAKEKSTDIISRRNGGDLGWMDENSMIDEL---KQAKLTEKGQVSAAIKSSVGYLIVRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P EV+ +IA +++ KA + +++ E + + ++ E+ S+
Sbjct: 356 DDVQPQQVKPLSEVRAEIAEKVKHEKAQDGYYALQQKISEAASN--DNESLASAEEAASV 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
++ ++ + P + + + + + + ++I E
Sbjct: 414 KAAQTEWFTREKVPAVLNFQPVTQAIFSGALLGENGAAGNNSDVINVDGDRAFVLRITEH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P R L++V T++ + K K ++ A +++ E + D K G S
Sbjct: 474 KPESTRPLDQVRTEIVEALKRQKAEQQARVDAEKILAELKQGK---DDALKAAGLSFGEA 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKV--GPVQ 585
++ + G +F+ P + + V+ + + +
Sbjct: 531 KTMSSISQ-----GDATAEAIFAMPHPQKDKPSYAITQDQAGNIVLAALDSVTPHQLNDE 585
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K +F S + Q L DS+++ L+S+ + + + ++
Sbjct: 586 QKTQFASQVQQGSLGALFDSLLSSLRSEAKIKMGNAAQEQ 625
>gi|271499601|ref|YP_003332626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
Ech586]
gi|270343156|gb|ACZ75921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
Ech586]
Length = 626
Score = 263 bits (671), Expect = 7e-68, Method: Composition-based stats.
Identities = 115/639 (17%), Positives = 250/639 (39%), Gaps = 30/639 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V K+ L ++ F++ G+ D L SG V Q++ S
Sbjct: 1 MMDNLRAAANNVVLKVILALIIGSFVLTGVGDYLIRGSG-DYAAKVNGQEITRSQLEQGV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + +G ++ L K++L L+ + Q+ +GL ++
Sbjct: 60 QNERNRQQEMLGDNFSALAANEGYMQQLRKQVLSQLIDETLVVQYAHTLGLNISDEQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F +D +++++ + G+ Y K L ++
Sbjct: 120 AIFSVPEFQTNN-RFDNDKYLAQVRQMGLTPDAYAQFLRKQLLTQQLIRGLGSTDFVLQQ 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
LD ++R++ L+ S+ + ++++ K Y APE ++SYI+
Sbjct: 179 ELDNLVAMAAQDRTIRTATLDLGVRARSQTVSDDEVKNFYDQNKSRYLAPEQFKVSYIML 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D K ++ N+++ A YE++K ++ PE + + + +A LKKG F
Sbjct: 239 DAASIMDKTKVDNNDIAAYYEQHKGEFTQPERKKYSVIQLKTEADAKVVLDQLKKGADFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + LG D L +KG + VI S GY+I +
Sbjct: 299 ALAKEKSTDIVSRRNGGDLGWMDDGSTVDE---IKQAGLKQKGQLSDVIKSSVGYLIIRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+ + EV+ D+A +++ K+ + +++ E + + + EK+ ++
Sbjct: 356 DDIQAQRVKALDEVRADLAEKVKREKSLDAFYALQQKVSEAASN--DNESLVSAEKVANV 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL--FRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D+ +D + P + +L V P + +++ +++ +
Sbjct: 414 KAVQTDWFTRDNVPAALNFQPVTQAILGGSLVGENGTPGNNSDVISVEGDRAFVLRVTDH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L++V V + K K ++ A +++ + ++ D G S
Sbjct: 474 KPEATQPLDKVRDQVVQSLKRQKAEQQARVDAEKILADLNQGKT---DSMTAAGLSFSAA 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKV--GPVQ 585
I+ + + VF+ P + + V+ + K
Sbjct: 531 KVISSIGQTD-----ALSETVFAMPQPKKDKPSYAVAQDQAGNIVLVALDAVKPHALSDD 585
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+K +F + + Q L D+++ L+SQ + + + +
Sbjct: 586 QKKQFGNQIEQSSVGALFDTLLTSLRSQAKIKLGNAAQE 624
>gi|325498268|gb|EGC96127.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia
fergusonii ECD227]
Length = 611
Score = 263 bits (670), Expect = 7e-68, Method: Composition-based stats.
Identities = 114/626 (18%), Positives = 254/626 (40%), Gaps = 28/626 (4%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ KI ++ V F++ G+S L + V Q++ F N++ E + Q++G
Sbjct: 1 MLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNGQEISRGQFENAFNSERNRMQQQLG 59
Query: 73 FVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ L +++L+ L+ A LDQ+ D+ L +V I +P F D
Sbjct: 60 DQYSELAANEGYMKTLRQQVLNRLIDEALLDQYSRDLKLGISDEQVKQAIFATPAFQV-D 118
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
KF + + + L + G++ +Y L+ ++ G D+ +
Sbjct: 119 GKFDNSRYNAILNQMGMSADQYAQALRNQLTTQQLINGIAGTDFMLKGETDELAALVSQQ 178
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
R V ++ S+A +T +++++K+N+ PE R+ + + +S
Sbjct: 179 RVVREATIDVNAKAEKQQVSDAEITSYYDQHKNNFVTPEQFRV--SYIMLDAANIQQPVS 236
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--- 306
+ ++QA Y+++++++ P+ + + EA +L G F +LA+E+
Sbjct: 237 DADIQAYYDQHQDQFTQPQRVRYSIIQTKTENEAKAVLDALNNGGDFAELAKEKSADIIS 296
Query: 307 -LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
+ LG P L D+ L KG + VI S G+++ + +++P+ +
Sbjct: 297 ARNGGDLGWLEDSTTP-QELKDAG--LKDKGQLSGVIKSSVGFLVVRLDDVQPAKVKTLA 353
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
EV+ DIA +++ KA + +++ + + T + ++ E+ + + +
Sbjct: 354 EVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGVKAKETGWFSQQN 411
Query: 426 KGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
+E+ P + + V P S + + +++ E + L EV
Sbjct: 412 LPEELNFKPVADAIFSGSLVGENGTPGSNSDIITVDGDRAFVLRVSEHKAEAIKPLSEVK 471
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
VK + K ++ +A +L++E K GK + + G ++R +
Sbjct: 472 DQVKALVQHDKAEQQAKLEAEKLLVEL-KAGKGVDAM-RAAGLQFGEQKTLSRSGQD--- 526
Query: 544 FGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEKDKFISYLTQMMN 599
+ P + + + + V+ V K G P +K + +TQ
Sbjct: 527 -PVSLAAFALGLPEKDKPSYGMATNTQGNVVLLAVDEVKAGTMPEAQKQALVQGITQNNA 585
Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ + +++++ L+ + + + D L Q+
Sbjct: 586 QIVFEALMSNLRKEAKIKIGDALEQQ 611
>gi|71907562|ref|YP_285149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
aromatica RCB]
gi|71847183|gb|AAZ46679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
aromatica RCB]
Length = 628
Score = 263 bits (670), Expect = 8e-68, Method: Composition-based stats.
Identities = 93/642 (14%), Positives = 231/642 (35%), Gaps = 36/642 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + +R R + ++FL ++ +PF +G+ + S V S+G K+ F +
Sbjct: 1 MFDAVRNNKR--IVQVFLALITLPFAFFGVDSYMRSAGSGGDVASIGDIKITQQQFQQTL 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ + ++G +++ + + ILD+L++ L + + + I
Sbjct: 59 REQQERLRTQLGAQFDAKMLDNPEARRAILDDLINQRLLLVEASKKHMSVSNDAIRQTIG 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F D KFS + + + L +G++ + + L+ + + + D
Sbjct: 119 AIEAFKV-DGKFSTERYEAALRAQGMSPTGFEAQLRQDLTLQQLASAVGQSGLVARSVSD 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E R V + ++ + +++++ ++ PE + Y++ +
Sbjct: 178 RLLSLQTEKREVMEYRFSLESYLDKVKLADDAVRKFYDENGQQFQMPEQAKAEYVVLSMD 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS---------LK 291
++ +S+ E++A Y+ +K+++ + E R ++ ++K + ++ K
Sbjct: 238 SIGSQLSVSDAEIKAWYDGHKDRFQAAEERRASHILLASEKLGKDKAKAKAEELLAEIRK 297
Query: 292 KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
F LA++ LG F + + + K G+ + V+ FG
Sbjct: 298 NPAAFADLAKKNSDDPGSASKGGDLGFFGRGMMVKSFEDTA--FGLKDGEISGVVESDFG 355
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ I V+ I + +VK +I +++ T +S K E + + + D +
Sbjct: 356 FHIIKVTGIHAAKEKPLADVKGEIEAELKKTGSSRKFAEAAEAFSNMVYEQS--DSLKPV 413
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + + D+ G+ K V + + + +
Sbjct: 414 AEKFKLTIKQSDWLGRQANPANGVLGNEKIMAALFSDDSVKNKRNTEAVEIAPNTLVAAR 473
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + P + + V ++ K + S + K +
Sbjct: 474 LIDYKPTALQPFDGVKAGIETMLKRKEAQVLASKDGEARLEALKKG---------EDKLN 524
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVG--- 582
++R+D+ VF + + G Y ++K++ G
Sbjct: 525 WGAAKSVSRLDSR--LIPPPAAQSVFRMETGKLPAYTGVELPGTGYALYKLSKVVAGENL 582
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
K + L ++ K+ + +A L+S+Y V V+ ++
Sbjct: 583 DEASKKGMLQQLGNLVAKEEVQLYLAALRSRYKVEVNQAALE 624
>gi|251790644|ref|YP_003005365.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Dickeya zeae
Ech1591]
gi|247539265|gb|ACT07886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya zeae
Ech1591]
Length = 626
Score = 263 bits (670), Expect = 9e-68, Method: Composition-based stats.
Identities = 116/639 (18%), Positives = 250/639 (39%), Gaps = 30/639 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ S
Sbjct: 1 MMDNLRAAANNVVLKIILALIIGSFVLTGVGDYLIRGSG-DYAAKVNGQEITRSQLEQGV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + +G ++ L ++L LV + Q+ ++GL +V
Sbjct: 60 QNERSRQQEMLGDNFSALAANEGYMQQLRGQVLSQLVDETLVVQYAHNLGLNISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F ++ ++S++ + G+ Y K L ++
Sbjct: 120 AIFSVPEFQTNN-RFDNEKYLSQVRQLGLTPDAYAQFLRKQLLTQQLIRGLGNTDFVLQQ 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
LD ++R+V ++ S+ + ++++ K Y APE ++SYI+
Sbjct: 179 ELDNLVAIAAQDRTVRTATIDLGARVKSQAVSDEEVKNFYDQNKARYLAPEQFKVSYIML 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D K ++ +++ A YE++K ++ PE + + + +A + LKKG F
Sbjct: 239 DAASIMDKTKVDGNDIAAYYEQHKSEFTQPERKKYSVIQLKTEADAKAVLEQLKKGADFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+++ + LG D L +KG + V+ S GY+I +
Sbjct: 299 ALAKDKSTDIVSRRNGGDLGWMDDGSTVDE---IKQAGLKQKGQVSDVVKSSVGYLIIRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++ EV+ D++ +++ KA + ++L E + + ++ EK+ +I
Sbjct: 356 DDVQAQHVKELDEVRADLSEKVKREKALDAFYSLQQKLSEAASN--DNESLASVEKVANI 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL--FRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D+ +D + P + +L V P + +++ +++ E
Sbjct: 414 KSVQTDWFTRDNVPAALNFQPVTQAILGGSLVGENGTPGNNSDVISVEGDRAFVLRVTEH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L++V V + K K ++ +A +++ + + D G S
Sbjct: 474 KPETTQPLDQVREQVVQSLKRQKAEQQAKVEAEKILADLYQGKT---DSMAAAGLSFSAA 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKV--GPVQ 585
+++ M + VF+ + + V+ + K P
Sbjct: 531 KEMSSMGQTD-----ALAETVFAMAQPKKDKPSYAVAQDQSGNIVLIVLDAVKPHVLPDA 585
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+K +F + + Q L D+++ L+SQ + + +
Sbjct: 586 QKKQFGAQIEQSNVGALFDTLMTSLRSQAKIKYGNAAQE 624
>gi|260776378|ref|ZP_05885273.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio coralliilyticus
ATCC BAA-450]
gi|260607601|gb|EEX33866.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio coralliilyticus
ATCC BAA-450]
Length = 619
Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats.
Identities = 117/631 (18%), Positives = 249/631 (39%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + S ++ VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSN-NSAAKVGNVEIGRGEFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ K +LD +++ L+Q E +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSTLLADPNYVESFRKSVLDRMINDLLLEQHAESLGLRVSDSQVRS 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF +++ + L R G + + ++ + L R ++
Sbjct: 120 MIVDMPQFQV-DGKFDQEIYQASLRRAGFSPDSFAEYLRRDLVRNQLLTAIQASDFSLEG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + + L+ + A+ S + ++ + + Y PE +++Y+
Sbjct: 179 EVEAQSKLLTQTREIKKVTLSLSDFASKAELSEQEINDYYTQNPERYTRPEQVKVAYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ + I++S+++ + Y+++ +KY S E R V ++ EA L G
Sbjct: 239 SAQQLKDAIDVSDEQAKQYYQEHLDKYSSEEQRRVSHILIEGDDEAKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LAEE+ SLG ++ + D + ++ F+L K GD T ++ FGY I
Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERDVM-DPAFEEAAFALKKAGDVTGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K S ++EV +I +++ +A ++ E +LE + + +
Sbjct: 358 KLDELKDSVAKPYEEVASEIKQELKDQQAIDQFYELQSQLETVAFEYPDSLDDA--ADAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
++ DF + + + A + +L + + + + V+++++
Sbjct: 416 KAEIHTTDFISQADAPELLKAPAVMQAILS--PEVKEDGLNSEVIEVAPEHVIVVRVEDA 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L+EV V VK + A+ LV E K K+ G + +
Sbjct: 474 RDETVLPLDEVREQVTTALAKVKGEQSAIKLADNLVAELKKGNKDL---MTENGLAFSDS 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVGPVQEK 587
I+R VFS VV ++TN K +
Sbjct: 531 ENIDRSSPLADV--------VFSMKKPSSGQVEFAQAKDFNGDIVVVELTNVKSDVNAQY 582
Query: 588 -DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + LTQM + L +I L+ +
Sbjct: 583 NEQIGTQLTQMNAQQDLSGLINILRKTIDIE 613
>gi|238795538|ref|ZP_04639053.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia mollaretii ATCC
43969]
gi|238720657|gb|EEQ12458.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia mollaretii ATCC
43969]
Length = 628
Score = 262 bits (668), Expect = 1e-67, Method: Composition-based stats.
Identities = 120/637 (18%), Positives = 264/637 (41%), Gaps = 23/637 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + +
Sbjct: 1 MMDNLRAAANNVVLKILLALIMLSFILTGVGSYLIGGSN-DYAAKVNGQEISRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E G + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V
Sbjct: 60 QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F + KF ++ ++ + R G ++ + L ++ F +
Sbjct: 120 AIRQAPYFQTDN-KFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPI 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R V ++ + + A ++ L ++++ K+++ APE ++S+I
Sbjct: 179 EAQAMSELILQQREVRLATVDLKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKVSFIAM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + KI ++ +++ A Y++++ Y PE R + F + EA A LKKG F
Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHRSSYTQPERRNYSVIQFKTEAEAKVALDELKKGADFA 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+E+ + G P+ + + +L++KG + V+ S GY+I +++I
Sbjct: 299 AMAKEKSTDIISRKNGGELGWLEPETTADELKQANLSEKGQLSDVVKSSVGYLIVRLNDI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP EV +A Q++ KA + +++ E + + ++ E+
Sbjct: 359 KPEQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEA--ATSDNESLASAEEAAGTKAK 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
D+ +D EV P + + V P S + + ++I P
Sbjct: 417 QTDWFTRDSIPTEVNFKPVAQAIFDGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V V + K K + +++ + + K G S +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKILTALKQGKG--EEAMKAAGISFGEKKTL 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R ++++ + +F+ P V + + V+ ++ + G P E
Sbjct: 535 SRAPDDDQ-----LVQTIFTLPHPQKDQPVYGLSQDREDNIVLIELLSVTPGKLPEGEMK 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
FI+ + + + D+++A L+ Q ++ + Q+
Sbjct: 590 TFIAKMQEGSSGVTFDALMANLRKQATIKMGPAEQQQ 626
>gi|218888106|ref|YP_002437427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|218759060|gb|ACL09959.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 630
Score = 262 bits (667), Expect = 2e-67, Method: Composition-based stats.
Identities = 113/647 (17%), Positives = 244/647 (37%), Gaps = 41/647 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE+IR +++W KI ++ + F+ WG+ S S + +V ++ + F +
Sbjct: 1 MLELIRAHAQSWGVKIAFGIIILVFVFWGVGS--MHNSSSGALATVNKKPILIQEFGREY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ + + + +E + +GL +++L +++ L IGL + I
Sbjct: 59 ERQVETLRSRY-PGITAEDMKQMGLKRQVLQAMITERLLADEAARIGLSVSPVELRRSIE 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F D +F +V+ S L + + + D + + + ++
Sbjct: 118 SITAFRNGDGRFDAEVYRSVLKGQQTSPGRFEDGIRRDMLLQKLRDRVAAPASVTDEEAR 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E R+++Y++ P++ + + + + D +R P+ + +
Sbjct: 178 ALFDYGRERRTIEYVLFPLEDYVLKVTPTDEQIAERYNENMDAWRNPQRISLDAVTLTPA 237
Query: 241 EKEKKIEISNDELQAEYEKNKEK-YFSPEIRTVEQLVFPNQK------------EADEAF 287
+EI + A Y N E + PE ++F Q+ +A++
Sbjct: 238 SLATSVEIPESAVAAFYADNAETYFVVPERVHARHILFMAQEGASKDEDAAARAKAEDVI 297
Query: 288 QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
LKKGK F LA +++G LG F+K + + K G+ + +
Sbjct: 298 AQLKKGKDFASLAAKLSDDKGSGAQGGDLGWFTKGQMVPP--FEEAAFALKPGEISAPVR 355
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
+FG+ + + + T + EV+ +I ++ KASE++ E E G S+D+
Sbjct: 356 SAFGWHVIKMEAHETQRTRALDEVRGEIRQRLGEEKASERMHEALDTALEMAGAGKSIDD 415
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
I++ K+ L A V + K Q + F D + + +G Y
Sbjct: 416 IAKALKLEHKPTGLFSRADAGVA------VGLKGQSVGTAFSTPAGTVIDTPLEV-EGGY 468
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
M + ES P LE+V +V + ++ A+ A + + + +
Sbjct: 469 MIAAVLESQPESVTPLEKVKEEVAAQVRRIEGAKLAVKAAQEAGAKLA------DGVPAE 522
Query: 524 LGASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
L A + T R + F+ + P++ V+F+V + +
Sbjct: 523 LAARVKTAEPFGRNGFIAPFGQSRALVDAAFAAAPGAWQPAPVDTSSGAVLFRVKDVQRP 582
Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV-HDNLIQ 624
E + + + ++L + L + + + + L+
Sbjct: 583 GDAEWSAAAETVRATVLSAKREELFRVFVGELSAAAKIELRNAKLLD 629
>gi|303326078|ref|ZP_07356521.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
sp. 3_1_syn3]
gi|302863994|gb|EFL86925.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
sp. 3_1_syn3]
Length = 640
Score = 260 bits (663), Expect = 4e-67, Method: Composition-based stats.
Identities = 109/652 (16%), Positives = 232/652 (35%), Gaps = 40/652 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++++ K+ V+ + F+ WG+ + ++ V V + F ++
Sbjct: 1 MLDYIRSNAQSFGVKVAFGVIILVFVFWGVGS-FNDRNSANVVAIVNGDPILVQQFEQAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ I + V E+ + L +++L +L+ L Q G+ + +
Sbjct: 60 RNAEESILRN-NPGVTREQLKEQHLGRQVLRDLIQQTLLAQEAARAGVSVTPLELRQAVG 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
R F +F + + LA + I+ +Y + L R + + +
Sbjct: 119 RIKSFQDAQGRFDPEAYTRVLAAQRISPAQYEKDMSDQLLREKIFTLVTAPVWVDPDEAQ 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
F E R VDY+ + ++ ++ +T +++ +K ++ P ++Y+
Sbjct: 179 NRYNFLREKRVVDYLFIPAKNFSGEVKVTDQDVTAYYDAHKKDFAIPPKVDVAYVSVTPG 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290
K IS + Q YE NK ++ P ++ P + A +
Sbjct: 239 GLVKPESISEADAQKWYEANKSRFEEPAQVKAAHILVPLAENAPADAEKKAREEVAKIQA 298
Query: 291 --KKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
K GK F +A+ S + LG + + K G + +
Sbjct: 299 ELKSGKDFAAVADAHNGSNAAGPGGELGWITPGKTVKPFEDAA--FALKAGQVSEPVRSP 356
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG I V + KP +F++ +++ M + ++K+ + L E LG + E +
Sbjct: 357 FGLHIIKVEDKKPGGLKTFKDAAREVRQAMAQEQGADKLHDVLDSLIEDNILGKPLAESA 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
R + + + +G + + + + D + D Y+
Sbjct: 417 ARFGLKA------EQSGLLSQSELEQKLGITPVGASALIATATGAPVDTALEAGD-KYLV 469
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+I ++ PA + L+ V + + K + A E K+G + + +LG
Sbjct: 470 ARIIKAEPASTQPLDAVKSAIVAKLTAEKALKAAVESAAARRKEL-KDGPLPQPLKASLG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGI-SQVFSGPVEMVKCFPIE-----NGLSYVVFKVTNS 579
+ T ++R N F + + VF+ G ++ +V
Sbjct: 529 --IKTAPAMDRGGNLADFNPDEALAEAVFTAKPGTWLPSAYAVDGKSEGPGALLCRVDAV 586
Query: 580 KVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVTV-HDNLIQRY 626
QE + + + ++ L I L S+ V V + +++ R
Sbjct: 587 LPPDPQEWNTVRDLMANGVARERVDGLYQVFIQNLASKAKVEVLNTDIVDRV 638
>gi|328473322|gb|EGF44170.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
10329]
Length = 619
Score = 260 bits (663), Expect = 5e-67, Method: Composition-based stats.
Identities = 105/631 (16%), Positives = 249/631 (39%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ L + S ++ VG ++P F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSN-NSAAKVGNTEIPRGEFEMAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ A K +LD +++ LDQ E +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F +++ + L R G + + ++ + L R ++
Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLTALQSSEFTLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + R + + ++ + ++ + +++ DN+ PE ++SY+
Sbjct: 179 EVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+K+I++++++++ Y+++ +KY S E R V ++ EA L G
Sbjct: 239 SAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNSGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +A+E+ + LG ++ + D + ++ F+L GD + ++ FGY I
Sbjct: 299 FAAVAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K + F EV +I ++ KA ++ E LE + + K +
Sbjct: 358 KLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELERVAFEYPDSLDDAS--KAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ DF + + + + LL + + + + V++++S
Sbjct: 416 NQEVKTTDFISQVDAPEVLRNQAVMQALLS--PEVKEDGLNSEAIEVAPEHIIVVRVEDS 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L EV V + VK + ++V ++ + +
Sbjct: 474 RDETVLPLAEVKDQVVAELSRVKGEQGALELGTKVVAALNEGNT---AVLAENNLTFGEQ 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
++R + VF+ + + VV ++ K
Sbjct: 531 ETVDRRSP--------LATTVFAMAKPVDGKPVYGQSKDLEGNIVVIELDAVKAELDSSL 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+D+ + + ++ L SV+A L++ +
Sbjct: 583 EDQVAMQMQRASSQQDLSSVLAVLRANTDIE 613
>gi|159044344|ref|YP_001533138.1| putative peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
shibae DFL 12]
gi|157912104|gb|ABV93537.1| putative peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
shibae DFL 12]
Length = 614
Score = 260 bits (662), Expect = 6e-67, Method: Composition-based stats.
Identities = 115/628 (18%), Positives = 253/628 (40%), Gaps = 29/628 (4%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
++ + + I L +L V +G+S ++ V SVG + + + + +L
Sbjct: 1 MKGKTSNFFMFILLGLLIVALAGFGISSF---GGSNARVGSVGDTDITVDEYARALQTQL 57
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
Q+ G V+ AR +GLD+++L LV+ A +D +G+ RV +I P
Sbjct: 58 RAAGQQRGRAVSMAEARELGLDRQVLAQLVNTAAIDNEAAKLGVSVGDMRVAEQIQTIPA 117
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
F G F + + L + ++ +E+ +R + +GG+R
Sbjct: 118 FSGIGGGFDREAYEFTLQQNNLSPEEFEADVRNEAARNLLQAAVIGGLRAPQAYTGTLYD 177
Query: 185 FYFENRSVDYIVLNNR-HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
F R + + A P++A L +++ + APE + I+Y+L +
Sbjct: 178 FIAARRDFTWAEITPDLVALTQAMPTDAELRAFYDANPAAFTAPETREITYVLLSPEMMQ 237
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEE 302
++ S ++L+A Y++ Y PE R ++++VF + +A EA +L G + F +L
Sbjct: 238 DQVSPSEEDLRAAYDRAASVYVQPERRLLDRVVFGTEAQAAEAKAALDSGAQSFEELLAA 297
Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
+ SL D+ LG +++ + D + ++ + + G + ++ +
Sbjct: 298 RDLSLEDVDLGEVARDDLDDA--VAEVVFGDQETGIVGPVRTALGPALFRINAALAAQVT 355
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
+F+E + ++ + A V ++ + L++ LA G +++E++ +L L
Sbjct: 356 TFEEARDELTAALAGDAARRAVADEIEALDDLLAGGATLEELAADTPAELGELSLTATTT 415
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
+ + + + L DG +++ E +P R +EV
Sbjct: 416 EGIAAYP---------EVRALANTLSEGDFPEIETLDDGGVFALRLDEVVPPRLLPFDEV 466
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
DV W+ + + +S++A + V E + G++F D G + R
Sbjct: 467 REDVVAGWEAQRLQDALSAEAAR-VAEALRGGESFAD----QGLERQVETGLTREAFIEG 521
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK------FISYLTQ 596
++ VF+ E + +V ++T ++ D ++Q
Sbjct: 522 T-PPALVTDVFALEAEG-DVALVPGNGVVIVAQLTAILPPDTEDPDAAFLRNVLDQSISQ 579
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ +D+ + ++ + +T++ + I
Sbjct: 580 TLAEDVFTAYATAIQQEAGITINQSTIN 607
>gi|28897695|ref|NP_797300.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus RIMD
2210633]
gi|260878350|ref|ZP_05890705.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
AN-5034]
gi|260898294|ref|ZP_05906790.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
Peru-466]
gi|260901515|ref|ZP_05909910.1| SurA N-terminal domain protein [Vibrio parahaemolyticus AQ4037]
gi|28805908|dbj|BAC59184.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus RIMD
2210633]
gi|308088424|gb|EFO38119.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
Peru-466]
gi|308092760|gb|EFO42455.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
AN-5034]
gi|308110873|gb|EFO48413.1| SurA N-terminal domain protein [Vibrio parahaemolyticus AQ4037]
Length = 619
Score = 260 bits (662), Expect = 6e-67, Method: Composition-based stats.
Identities = 105/631 (16%), Positives = 249/631 (39%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ L + S ++ VG ++P F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSN-NSAAKVGNTEIPRGEFEMAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ A K +LD +++ LDQ E +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F +++ + L R G + + ++ + L R ++
Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLTALQSSEFTLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + R + + ++ + ++ + +++ DN+ PE ++SY+
Sbjct: 179 EVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+K+I++++++++ Y+++ +KY S E R V ++ EA L G
Sbjct: 239 SAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +A+E+ + LG ++ + D + ++ F+L GD + ++ FGY I
Sbjct: 299 FAAVAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K + F EV +I ++ KA ++ E LE + + K +
Sbjct: 358 KLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELERVAFEYPDSLDDAS--KAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ DF + + + + LL + + + + V++++S
Sbjct: 416 NQEVKTTDFISQVDAPEVLRNQAVMQALLS--PEVKEDGLNSEAIEVAPEHIIVVRVEDS 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L EV V + VK + ++V ++ + +
Sbjct: 474 RDETVLPLAEVKDQVVAELSRVKGEQGALELGTKVVAALNEGNT---AVLAENNLTFGEQ 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
++R + VF+ + + VV ++ K
Sbjct: 531 ETVDRRSP--------LATTVFAMAKPVDGKPVYGQSKDLEGNIVVIELDAVKAELDSSL 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+D+ + + ++ L SV+A L++ +
Sbjct: 583 EDQVAMQMQRASSQQDLSSVLAVLRANTDIE 613
>gi|300114008|ref|YP_003760583.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
watsonii C-113]
gi|299539945|gb|ADJ28262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
watsonii C-113]
Length = 640
Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats.
Identities = 104/650 (16%), Positives = 236/650 (36%), Gaps = 37/650 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++ A + + ++ +PF +WG+++ + G + SV +++ F ++
Sbjct: 1 MLQAIRSRAQGIFAWVIVGLIAIPFTLWGINNYMLDG-GEAVAASVNGEEISTREFQLAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +G E + +++ LV + ++GL + I
Sbjct: 60 QNYTQQLRFLMGASFPEEMLDDPATKQNVIEGLVEQRLVLDAAAELGLGMSDSALSQVIR 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ F G+ +F + + L+ +G+ Y L + + +D
Sbjct: 120 SNEAFQGESGQFDSQRYEAVLSSQGLTPVAYEARLRSALLSEQLASSLRLSAFATQQEVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R + R V Y ++ + + S + Q+++ + + +R PE ++ Y+
Sbjct: 180 TIARLRHQKREVAYSIVPSANFHDAIQVSADKVRQYYDDHPEEFRIPEQVKVHYLRLTAA 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEADEAFQ 288
I + L+ YE++K++Y PE R ++ Q++A+ +
Sbjct: 240 SLATDIPLDEQTLRNFYEESKDQYRVPERRRASHILITIPPQGDEAVRQQAQEKAEAVLE 299
Query: 289 SLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
L++G+ F ++A+E + LG F + + D + ++FSL + G + I
Sbjct: 300 RLQQGEAFEEVAKEVSEDPGSAKKGGDLGFFGRGVM-DPAFEKAVFSLEETGVLSEPILS 358
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FGY I ++ I+P F+ V++++A + R A E+ E + L+ E+
Sbjct: 359 KFGYHIIKLTGIEPGEVKPFEAVREELAQKYRQQIAEEQFYEQAEILDNLTYENPFTLEV 418
Query: 405 SRR-EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ + G + T+ L
Sbjct: 419 AAESLGLSVETSEPFSQNGGSGIAANTKVVA-----AAFSEEVLREEMNSQTIELAPNDL 473
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ V++ + +PA + EEV +++ + + + LV + + + +
Sbjct: 474 VVVRLDKHLPADTKPFEEVREQIQEKLTLEQAKAQAQKRGEALVADLQQGESPETVLKEE 533
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG-----LSYVVFKVTN 578
R D + + I + P P G Y V V
Sbjct: 534 KEIVWNEKKWYARDDQD---IPAEIIKLAYELPHPPSSKEPAFAGQALASGDYAVVGVYK 590
Query: 579 SKVGPVQEKDK-----FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ G + ++ + + Q+ + + I LKS+ + ++ +
Sbjct: 591 VQNGDPSKLEEKARRSLVQEMEQVHGEMVYRDFIQELKSKADIKIYTENL 640
>gi|148977892|ref|ZP_01814445.1| peptidyl-prolyl cis-trans isomerse D [Vibrionales bacterium SWAT-3]
gi|145962838|gb|EDK28110.1| peptidyl-prolyl cis-trans isomerse D [Vibrionales bacterium SWAT-3]
Length = 621
Score = 259 bits (660), Expect = 1e-66, Method: Composition-based stats.
Identities = 111/631 (17%), Positives = 237/631 (37%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYITGGGN-NAAAKVGNTEIGRGEFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ A K +LD +++ L+Q E +GL ++
Sbjct: 60 QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F +F +V+ + L R G + + + ++ + L R +V G
Sbjct: 120 MILEMPQFQTAG-QFDQEVYQAALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + + R + + L+ + + ++ + Q++ + Y PE ++SYI
Sbjct: 179 EIDTQSKLIAQTRDIRTVTLSVADLAKDVELTDEQIEQYYTENPLAYTRPEQAKVSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++E+S++E Q Y+++ +KY + E R V ++ EA L G
Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTAEQRKVSHILVEGDDEAKAQSILDELNAGTD 298
Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LAEE+ LG ++ + D + D+ F+L GD T ++ FGY I
Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERDVM-DPAFEDAAFALQNVGDTTGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K + + EV +I ++ A ++ E LE+ + S +
Sbjct: 358 KLDELKAPESQPYAEVAAEIKQELLDQHAVDQFYEMQTELEKVAFEFPDSLDDSAE--AI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + DF + + + + +L + + + + V+++E+
Sbjct: 416 NAKITTTDFISQADAPEVLMTPAVMQAILS--PEVKEDGLNSELIEVAPEHVIVVRVEET 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
LEEV V VK E+ LV + + +
Sbjct: 474 RDETVLPLEEVKDQVVAALSAVKAEEQAVELGVSLVNDLKAGN---EAVLADNNLEFTEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI----ENGLSYVVFKVTNSKVG-PVQE 586
I+R + VF+ + + VV +++
Sbjct: 531 ETIDRNSP--------LAASVFALAKPEEGQVVFGQSKDQAGNIVVVELSKVTAEINPAY 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L ++ N+ L +V+ L+ V
Sbjct: 583 STQIGAQLERVGNQQDLTNVLNVLRKNADVE 613
>gi|323498280|ref|ZP_08103282.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sinaloensis DSM
21326]
gi|323316708|gb|EGA69717.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sinaloensis DSM
21326]
Length = 619
Score = 259 bits (659), Expect = 1e-66, Method: Composition-based stats.
Identities = 118/631 (18%), Positives = 246/631 (38%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + +G +T VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGAG-NTAAKVGNVEIGRGEFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ + K +LD +V+ ++Q E +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLIEQHAETLGLRVSDAQVRT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF D++ + L R G + + ++ + L R ++
Sbjct: 120 MIVEMPQFQA-DGKFDQDIYQASLRRAGFTPESFAEYLRRDLVRNQLLTAIQASDFSLAA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R V+ + L A S + ++E+ Y PE +++YI
Sbjct: 179 EVEAQAKLLTQTREVETLTLPLSDFAAKVKLSEEDIQAYYEQNPQRYTRPEQVKVAYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKK 295
+ + I IS ++ + Y+++ +KY S E R V ++ +Q +A L G
Sbjct: 239 AAQQLKDAITISEEQAKKYYDEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LAEE+ SLG ++ + D + ++ F L G+ T ++ FGY I
Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERDVM-DPAFEEAAFGLNNVGEVTELVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K S + EV +I +++ +A ++ E LE+ + + V
Sbjct: 358 KLDELKASVAKPYTEVAAEIKQELKDQQAIDQFYELQSELEKVAFEFPDSLDDA--ANAV 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ DF + + + + +L + + + + V+++++
Sbjct: 416 DAKIETTDFISQADAPELLKTPAVLQAILS--PEVKEDGLNSEVIEVAPEHVIVVRVEDA 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
LEEV T V + VK + A++LV E + + + + T+
Sbjct: 474 RDETVLPLEEVRTQVTETLAKVKGEQSAIELADKLVAELKEGKQQL---LEENDLAFGTS 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVGPVQEK 587
++R +FS P V K+ ++
Sbjct: 531 ETVDRSSPLADV--------IFSMPKPAEGQVEYAQAKQINGDIAVVKLAKVSDQFDEQY 582
Query: 588 D-KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + S LTQM + L +I+ L+ +
Sbjct: 583 NTQIGSQLTQMNAQQDLTGLISILRKTTDIE 613
>gi|309787033|ref|ZP_07681645.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 1617]
gi|308924611|gb|EFP70106.1| PPIC-type PPIASE domain protein [Shigella dysenteriae 1617]
Length = 611
Score = 259 bits (659), Expect = 1e-66, Method: Composition-based stats.
Identities = 120/628 (19%), Positives = 253/628 (40%), Gaps = 32/628 (5%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ KI ++ V F++ G+S L + V Q++ F N++ E + Q++G
Sbjct: 1 MLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAFNSERNRMQQQLG 59
Query: 73 FVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ L +++L+ L+ A LDQ+ ++ L +V I +P F D
Sbjct: 60 DQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQV-D 118
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
KF + + L + G+ +Y L+ ++ G D+ +
Sbjct: 119 GKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQ 178
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
R V ++ + A + + ++E+ K+N+ PE R+SYI D ++ +S
Sbjct: 179 RVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQ--PVS 236
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--- 306
+ ++Q+ Y+++++++ P+ + + EA L KG F LA+E+
Sbjct: 237 DADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIIS 296
Query: 307 -LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
+ +G IPD L +KG + VI S G++I + +I+P+ S
Sbjct: 297 ARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLD 353
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
EV+ DIA ++R KA + +++ + + T + ++ E+ + + KD
Sbjct: 354 EVRDDIAAKVRHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGVKATQTGWFSKDN 411
Query: 426 KGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
+E+ P + + V P + + ++I E P + L +V
Sbjct: 412 LPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQ 471
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
VK + K ++ A +L+++ K GK + + G ++R +
Sbjct: 472 EQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRSGRD--- 526
Query: 544 FGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQEKDKFISYLTQM 597
F+ P+ + + V+ + K G P +K + +TQ
Sbjct: 527 ---PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQN 583
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ + +++++ L+ + + + D L Q+
Sbjct: 584 NAQIVFEALMSNLRKEAKIKIGDALEQQ 611
>gi|37527725|ref|NP_931070.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36787161|emb|CAE16237.1| Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 623
Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats.
Identities = 110/633 (17%), Positives = 255/633 (40%), Gaps = 29/633 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI L ++ + F++ G+ L S +GS V Q + + ++
Sbjct: 1 MMDNLRTAANSPVLKIVLALIILSFVLTGVGGYLTSGAGS-YAAEVNGQAISRAQLEQAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+QE + +++G + S+ + + LD L++ A +DQ+ ++GL A +V
Sbjct: 60 QQERNALQEQLGDKFSVLASDEQSMKQIRNQALDRLINNALIDQYSRELGLSASDEQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + F D KF ++ ++ L R ++ + + + L ++ F G
Sbjct: 120 SIRNTSYFQ-TDGKFDNNKYLELLNRFNMSPDIFAEQTRQNLVNQQLIMAFSGSEIALPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R+ L + + A + ++ L ++ K ++ A E +ISYI
Sbjct: 179 EVKLNAELLLQQRTARIATLELKKIQAQQEVTDKDLQDYYNLNKSSFIASEEVKISYIKM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ K+ ++ ++ A YE N ++Y PE + + + EA F L KG F
Sbjct: 239 DAVDEMNKVSATSADVDAYYEHNLKRYTQPEQKKYSLIQLATESEARTVFDELNKGADFG 298
Query: 298 QLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+LA ++ + + +G ++ +P+ +L +KG + VI G+ I H+
Sbjct: 299 KLATKKSTDKFSAKNHGEIGWMEEDALPEEL---KQANLKEKGQISSVIKVPNGFAIFHL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
++KP EV+ +I ++ KA + +++ + + + ++ E++ I
Sbjct: 356 DDVKPQIIKPLSEVRSEIEKMVKQEKAVDAFYALQQKVSDA--ATSDNESLAAAEEVSGI 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKES 471
+ D+ ++ E+ + + +++ +++
Sbjct: 414 KVVTTDWFDRNSVPAEINFGAVIHAIFEGNLVDGQGPTGTNSDVISVEGDRAFVLRVDNY 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + E+V V + K K +++ ++ +L+ + K+ G +
Sbjct: 474 KPETVQPFEKVKDQVTELVKRQKAEKQLQVESEKLLTALKEGKG--EQALKDAGIQFGES 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNSKVG--PVQ 585
I R +N + VF+ P+ + V+ ++ G +
Sbjct: 532 QVIQRTSQDNV-----LVGAVFALPLPKEGKAEYGLTKNSLDDVVLIQLDKVTPGVVSEE 586
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ M +L+S++ L+ + + +
Sbjct: 587 QIKSMTDGYQSEMGNAMLESLLISLREKAKIKL 619
>gi|332098560|gb|EGJ03526.1| PPIC-type PPIASE domain protein [Shigella boydii 3594-74]
Length = 611
Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats.
Identities = 119/628 (18%), Positives = 253/628 (40%), Gaps = 32/628 (5%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ KI ++ V F++ G+S L + V Q++ F N++ E + Q++G
Sbjct: 1 MLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAFNSERNRMQQQLG 59
Query: 73 FVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ L +++L+ L+ A LDQ+ ++ L +V I +P F D
Sbjct: 60 DQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQV-D 118
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
KF + + L + G+ +Y L+ ++ G D+ +
Sbjct: 119 GKFDNSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQ 178
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
R V ++ + A + + ++E+ K+N+ PE R+SYI D ++ +S
Sbjct: 179 RVVREATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQ--PVS 236
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--- 306
+ ++Q+ Y+++++++ P+ + + EA L KG F LA+E+
Sbjct: 237 DADIQSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIIS 296
Query: 307 -LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
+ +G IPD L +KG + VI S G++I + +I+P+ S
Sbjct: 297 ARNGGDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLD 353
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
EV+ DIA +++ KA + +++ + + T + ++ E+ + + KD
Sbjct: 354 EVRDDIAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGVKATQTGWFSKDN 411
Query: 426 KGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
+E+ P + + V P + + ++I E P + L +V
Sbjct: 412 LPEELNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQ 471
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
VK + K ++ A +L+++ K GK + + G ++R +
Sbjct: 472 EQVKALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRSGRD--- 526
Query: 544 FGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQEKDKFISYLTQM 597
F+ P+ + + V+ + K G P +K + +TQ
Sbjct: 527 ---PISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQN 583
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ + +++++ L+ + + + D L Q+
Sbjct: 584 NAQIVFEALMSNLRKEAKIKIGDALEQQ 611
>gi|156973716|ref|YP_001444623.1| peptidyl-prolyl cis-trans isomerse [Vibrio harveyi ATCC BAA-1116]
gi|156525310|gb|ABU70396.1| hypothetical protein VIBHAR_01421 [Vibrio harveyi ATCC BAA-1116]
Length = 619
Score = 258 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 110/631 (17%), Positives = 245/631 (38%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + ++ VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIV-GGNNNAAAKVGNTEIARGEFEMAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ A K +LD +++ LDQ E +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + KF +++ + L R G + + ++ + L R ++
Sbjct: 120 MILDMPQFQS-NGKFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQTSEFTLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + R V I ++ D ++ + +++ + + PE +++YI
Sbjct: 179 EVQSEGKLFTQTRDVRTITIDLNEFAKKVDLTDEEIQDYYKANPEMFTRPEQVKVAYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
E +K+I+IS+++++ Y+++ +KY + E R V ++ EA L G
Sbjct: 239 SADELKKQIQISDEDVKKYYDEHLDKYSTEEQRRVAHILVEGDDEAKAQAILDELNGGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +LAEE+ + LG ++ + D + ++ F+L GD T ++ FGY I
Sbjct: 299 FAKLAEEKSNDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDITGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K + F EV +I +M KA ++ E LE+ + + K V
Sbjct: 358 KLEELKGAVAKPFSEVAAEIKQEMVDQKAVDQFYELQNELEKVAFEYPDSLDDAS--KAV 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ DF + + + + +L + + + + V+++++
Sbjct: 416 GQKVKTTDFISQVDAPEVIKNQAVMQAILS--PEVKEDGLNSEAIEVAPEHIIVVRVEDA 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L +V V + VK + ++V K DI +
Sbjct: 474 RDETVLPLADVKDQVVAELSRVKGEQGAIELGTKVVAALKDGNK---DILAENNLAFGEQ 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
+ ++R + VF+ + VV ++
Sbjct: 531 DSVDRRSP--------LAATVFAMAKPEGDKPVYGQSKDLDGNVVVIELDAVHAELDSTL 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+++ + + ++ L SVIA L++ +
Sbjct: 583 EEQVAMQMQRASSQQDLTSVIAVLRANTDIE 613
>gi|37679292|ref|NP_933901.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
gi|37198035|dbj|BAC93872.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
Length = 625
Score = 258 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 119/631 (18%), Positives = 242/631 (38%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ L S S++ VG ++ F ++
Sbjct: 7 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVSG-SSNSAAKVGNVEIGRGEFEMAY 65
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ A K +LD +++ LDQ E +GL +V
Sbjct: 66 QNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVRS 125
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F +D KF+ DV+ + L R G + + ++ + L R+ ++
Sbjct: 126 MILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRSQLLDALQTSEFTLPG 184
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + + + R V + LN R + + +++++ K + PE ++SYI
Sbjct: 185 EVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKVSYIEL 244
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKK 295
+++I IS+DE++ Y+++ +KY S E R V ++ +Q +A L G
Sbjct: 245 AADSLKQQITISDDEVKQYYQEHLDKYSSEEKRRVAHILIEGDDQAKAQAILDELNAGAD 304
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+++ + LG + + D + ++ F+L GD T ++ FGY I
Sbjct: 305 FAALAQDKSDDFGSADNGGELGWIERGVM-DPAFEEAAFALKNVGDVTGLVKSDFGYHII 363
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K F +V I +M KA ++ E LE+ E + K V
Sbjct: 364 KLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELEKVAFEYPDSLEEAS--KAV 421
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ DF + + + + + + + V++ ++
Sbjct: 422 GQQVKHTDFISQVDAPEILRTPAVTQ--AITSPEVKLDGLNSEAIEIAPEHIIVVRVDDA 479
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L EV V + VK ++ ++V I + G S
Sbjct: 480 RDETVLPLTEVQDQVAAELSQVKGEQQALELGTEVVTALKAGNT---AILQEKGLSFGEL 536
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
+I+R VF+ + VV + +
Sbjct: 537 EKIDRRSP--------LAQTVFAMAKPAAGNAVYGQSKDMEGNVVVVALEKVEESLEPVL 588
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L ++ + L S++A L++ +
Sbjct: 589 AQQISVQLQRVSAQRDLSSIVAILRANTDIE 619
>gi|83593225|ref|YP_426977.1| hypothetical protein Rru_A1890 [Rhodospirillum rubrum ATCC 11170]
gi|83576139|gb|ABC22690.1| hypothetical protein Rru_A1890 [Rhodospirillum rubrum ATCC 11170]
Length = 632
Score = 258 bits (657), Expect = 2e-66, Method: Composition-based stats.
Identities = 134/634 (21%), Positives = 257/634 (40%), Gaps = 20/634 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R+ S++W+AK L +L + F +WG++D + G ++VG Q N +
Sbjct: 1 MLDALRRGSKSWLAKSLLGLLVLSFGVWGVADYMVRGGGPKPAITVGGQSFGAGYVRNQF 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++LG + ++ G +++E+A ++GL + + +V GA LD+ +GL A + I
Sbjct: 61 SEDLGRLRRQ-GIELDAEQAIAMGLLGQTVQTIVQGAVLDESGRRLGLVASDDALRSAIQ 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
PLF G D +F D LA + E YID + + R +V V + ++D
Sbjct: 120 NDPLFKGADGRFDRDRLSRILAANNLTEAGYIDLRRRDMIREALVEPVVSAVGVPGPIVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
E R + + +PA P+ L + ++ D + APEY+ +L
Sbjct: 180 VLAAHASERRVAQVLTVAKAALPAPTTKPTEEALEKVRQENLDRFTAPEYRTAKALLLTR 239
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
I ++++ + YE + +++ P R V Q +F ++++AD A ++ +
Sbjct: 240 DAVAGSITVADEAIAQYYEAHGDEFVQPASRRVTQALFSSREQADSALVLIRSSSASLDE 299
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
A + I +G+ + +P + + G G+ + V+ P
Sbjct: 300 ASRKITGSGAIDMGNVTDSSLPAP--LPATIAAQDVGVVGEPAQSPLGWHLFLVTAATPE 357
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
T EV I + +A + + ++E+ LA G +DE++ + + + VD
Sbjct: 358 TTKPLAEVAPQIRKTLASDQAVDSLYALSTQVEDLLAGGAGIDEVATQVGLPLLAF-SVD 416
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
G G +P L +FG + + +G + +++ P R L
Sbjct: 417 SQGNSQDGTPAKGLPSDGAFLKTLFGL--GEGEVSPMIDYEGGFFIQRLETITPRAPRPL 474
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS-LLTTNQINRMD 538
+ V +V W+ + A L+ K G +F D+ AS L TT + R
Sbjct: 475 DAVRAEVVALWQDQEQTATAGRLAEGLLSRA-KAGASFEDLAAAEPASRLSTTPPVTRDG 533
Query: 539 NENKF-----FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDK 589
+ + +F+ V +G+S + +V + + E+
Sbjct: 534 RSDGAAEADPLPGALVQAMFAARQGDVVRADGSDGVS--LLRVLEIRQPSAEIAARERAS 591
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
L Q + D+ + A L VTV ++
Sbjct: 592 VEQSLRQAYSADVANGYSAALGDTVGVTVDQGVV 625
>gi|258405892|ref|YP_003198634.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfohalobium
retbaense DSM 5692]
gi|257798119|gb|ACV69056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfohalobium
retbaense DSM 5692]
Length = 626
Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats.
Identities = 102/645 (15%), Positives = 244/645 (37%), Gaps = 41/645 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RK +++W K ++ + F+ WG+ + ++ V V + + F ++
Sbjct: 1 MLDAMRKNAQSWAIKFLFALIILVFVFWGVGN--LGNDQATVVAEVQGEAILIRDFQQAY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + +K ++ E + L +++L++L++ L + + +GL V +
Sbjct: 59 QRTVENLRRK-QPDISREDFEQMQLKRQVLNDLITSQLLFREAKKLGLAVTAPEVRQYVQ 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P+F D +F + L + ++ T+ L + S
Sbjct: 118 QMPVFQNADKQFDPSRYEQLLRANQLTPAQFEADLTRSLLTNKIQRAVKLPASVSEAQAK 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
F E ++Y + + P P+ + ++++ + ++ P + Y+L
Sbjct: 178 DLFAFSQEKARMEYALFAWQDQPG-LAPNEEAVKHYYQENQKQFQRPARMEMDYLLLTPE 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQKEADEAFQ 288
+S++E++A YE N ++ E + V +++A +
Sbjct: 237 GLAAAQPVSDEEIKAYYEANPGEFERQEELKARHILIEVPEGADDQQVTEAREQAQALVE 296
Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L+ G +LA E S LG F++ + + A G+ + + S
Sbjct: 297 RLRDGADLAELAREYSDGPSSAQGGDLGWFARGEMVEAFEA--AAFALDTGEISDPVRTS 354
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + V + KPS T F+EV+ +I ++ KA++K+ + + + G S+ + +
Sbjct: 355 FGFHVITVEDRKPSGTQPFEEVQDEIRQEIGADKAAQKMSDLLDEALDLILSGKSLKDTA 414
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+I + + + + + LF + P T L D Y+
Sbjct: 415 ATLEIPLRHSGPFT---QAQGPEGIELDKEQRETLFTL----TPGEVTDTPLLLDNGYLI 467
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ + PA+ R+L+ V ++ K + E+ + A ++ ++
Sbjct: 468 AKQTDFSPAQPRELKAVRDQIETTLKREQGLEKAKAAAENVLARLEAPDQDLE------- 520
Query: 526 ASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP- 583
T+ R + VF+ P + YV+ ++
Sbjct: 521 RETSTSEPFGRRGFIPGLGMNPQLVESVFNAEQGQWLEKPYKVQQGYVLARLAERVAPDM 580
Query: 584 ---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV-HDNLIQ 624
+++ ++ L Q + L + + L+ + V + + +++
Sbjct: 581 SKWEEQQSLWVGQLQQSRKQALFQAYLTQLREKAEVKIVNPGVLE 625
>gi|145298875|ref|YP_001141716.1| peptidyl-prolyl cis-trans isomerase D [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851647|gb|ABO89968.1| peptidyl-prolyl cis-trans isomerase D [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 637
Score = 257 bits (655), Expect = 4e-66, Method: Composition-based stats.
Identities = 116/637 (18%), Positives = 249/637 (39%), Gaps = 31/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R+ ++ VAK+ L ++ + F + G+ L + ++ +V + ++ N++
Sbjct: 2 MLDKLREGAQGKVAKVILGLIILSFALAGVGSYLNGPARTAP-ATVNGNDISSAALENAY 60
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + + + +LD L+ A D ++GL ++
Sbjct: 61 RNERARMESQMGESFSQLAANPDYMKQFRRGVLDRLIDQALFDSKARELGLRVSDEQIKQ 120
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F +D KF++D ++ + R G+ + + D + + R ++G +G
Sbjct: 121 AIIAMPEF-AEDGKFNNDRYLQLIRRAGMTPEMFRDSLRQDMVRQQLMGALLGTEFALKG 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+Q + Y + R + + L S+ + Q+++ + E ++ Y+L
Sbjct: 180 EAEQLDKLYNQTRDLRLVRLAAAAYLGDVQVSDQEVEQYYKTNSARFMNDEKVKVDYLLL 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-------EAFQSL 290
D K I+++ + + Y+++++ + E R V ++ P K+ E
Sbjct: 240 DAANLGKDIKVTEQDAKDYYDQHQDLFQRAERRHVAHILIPFGKDEKAAEKLAGELLTKA 299
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
K G F LA+ L F K + D + + F+L K GD + ++ F
Sbjct: 300 KGGDDFAALAKANSSDTFSAKKGGELDWFEKGVM-DPAFEQAAFALNKAGDLSNLVKSPF 358
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ + + ++ + T F +V + +++ KA E + +++ + + + D +
Sbjct: 359 GFHVIKLLGVEAAQTKPFVDVMGETIRRLQADKAKELFFAEQQKMAD--SSFENQDSLDL 416
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + + VDF + + + K + D + + L DG + +
Sbjct: 417 TADTMGLKVQSVDFFSQADAPEPLNDP--KVLSVAFSEQLRDDNTNSDVIELADGKALVL 474
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
I P + L E+ V K K +E KA L+ + K G+N + LG
Sbjct: 475 HITGYQPKAAKPLAEIKEQVIAAIKYDKASEVARGKAQGLLDKL-KAGENIQADLTALGL 533
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGP-----VEMVKCFPIENGLSYVVFKVTNSKV 581
+ T + R + + ++QVF P V+ NG VV
Sbjct: 534 KMETHKGVARFAQD---MDQNLVAQVFRMPHPKDGKPSVELVAEANGDRVVVALDKVVVA 590
Query: 582 GPVQEKDKFIS-YLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L Q + S+I L+ +
Sbjct: 591 KEPSQMVSLLQGQLGQGKAQVSYKSLIDELRKAAKIE 627
>gi|310766848|gb|ADP11798.1| putative protease maturation protein [Erwinia sp. Ejp617]
Length = 623
Score = 257 bits (655), Expect = 5e-66, Method: Composition-based stats.
Identities = 112/632 (17%), Positives = 251/632 (39%), Gaps = 32/632 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R AS V K+ L ++ + F++ G+ L SG V Q++ + ++
Sbjct: 1 MMDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSG-DYAAKVNGQEIGRAQLERAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E Q +G + + ++ L L+ L Q+ ++IGL ++
Sbjct: 60 SSERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF + ++S + G +Y + K L+ ++G G
Sbjct: 120 AIFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTGTDFVLGN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D + R V + +N + A + + + ++++++ + +PE R+SYI
Sbjct: 179 ETDSLAALVAQQRLVREVTINVNAMAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSYIKM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S ++Q+ Y+++++ Y P+ + + EA +LKKG F
Sbjct: 239 DASAMQQ--PVSESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALKKGGSFA 296
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+LA+E+ + +G E PD + L +KG + VI S G+++A +
Sbjct: 297 KLAKEKSADPISARNGGDMGWLEPETTPDELKNAA---LKEKGQLSDVITSSVGFIVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ +P + EV +IA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDTQPEKVKALSEVHDEIARKLKQEKAVVAFYKLQQKVSDAASN--DNESLASAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D+ +D E+ ++ + + P S + + ++I+E
Sbjct: 412 KAVDTDWFDRDNLPAELKFKAVQDAIFNGALLGENGAPGSNSEVITVDGDRAFVLRIREH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L++V + K K ++ ++A++L+ E D K
Sbjct: 472 KPEAVKALKDVTAQITDTLKQQKGLQQAKAQADKLLAELKAGKG--DDALKAANLRFAAQ 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVG--PVQ 585
+ R + FS P+ + + V+ + + G P
Sbjct: 530 QTLTRTGQD------ALTQAAFSLPLPPQGKPSYGISEDAQGNVVLIALDKVQKGGMPEA 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+K + +TQ + ++++ L+ + +
Sbjct: 584 QKQALVQGITQNNAQLAFAAMLSNLRKEAKIK 615
>gi|269961041|ref|ZP_06175410.1| peptidyl-prolyl cis-trans isomerse D [Vibrio harveyi 1DA3]
gi|269834260|gb|EEZ88350.1| peptidyl-prolyl cis-trans isomerse D [Vibrio harveyi 1DA3]
Length = 619
Score = 257 bits (654), Expect = 5e-66, Method: Composition-based stats.
Identities = 108/631 (17%), Positives = 248/631 (39%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + +++ VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIV-GGNNNSAAKVGNTEIARGEFEMAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ A K +LD +++ LDQ E +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F D++ + L R G + + ++ + L R ++
Sbjct: 120 MILDMPQFQS-NGQFDQDIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQTSEFTLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + R V I ++ D ++ + +++ D + PE +++YI
Sbjct: 179 EVQAEGKLFTQTRDVRTITIDLNEFAKKVDLTDEEIQDYYKANPDMFTRPEQVKVAYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
E +K++++S+++++ Y+++ +KY + E R V ++ EA L G
Sbjct: 239 SAEELKKQVQVSDEDVKKYYDEHLDKYSTEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +A+E+ + LG ++ + D + ++ F+L GD T ++ FGY I
Sbjct: 299 FATVAKEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMTGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K + + EV +I +M KA ++ E LE+ + + K V
Sbjct: 358 KLEELKGAVAKPYSEVAAEIKQEMIDQKAVDQFYELQNELEKVAFEFPDSLDDAS--KAV 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ DF + + + + +L + + + + V+++++
Sbjct: 416 GQKVKTTDFISQADAPEVLKNQAVMQAILS--PEVKEDGLNSEAIEVAPEHIIVVRVEDA 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L+EV V + VK + ++V + K DI +
Sbjct: 474 RDETVLPLDEVKDQVVAELSRVKGEQGAIELGTKVVAALKEGNK---DILAENNLTFGEQ 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
++R S VF+ + + VV ++
Sbjct: 531 ESVDRRSP--------LASTVFAMAKPVDGKPVYGQSKDLEGNIVVVELDAVHAELDSAL 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+++ + + + ++ L SVIA L++ +
Sbjct: 583 EEQVATQMQRASSQLDLSSVIAVLRANTDIE 613
>gi|127513432|ref|YP_001094629.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
PV-4]
gi|126638727|gb|ABO24370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
PV-4]
Length = 621
Score = 257 bits (654), Expect = 6e-66, Method: Composition-based stats.
Identities = 118/636 (18%), Positives = 249/636 (39%), Gaps = 41/636 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ +AK LV++ + F G+S L S + +V +++ S+ ++
Sbjct: 1 MLEKIREGSQGVIAKGILVLVILSFAFTGVSSYL-GSSSEPSAATVNGEEISKSALEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G + + S + + + +L+ L++ +DQ D+GL ++
Sbjct: 60 QSERARLEQQLGDMYDTLASNESYLASVKQNVLERLIADKLVDQAAADLGLTVSDQQIKT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF +D +++ + + G + D ++R +V VG
Sbjct: 120 AIMNEPAFQT-DGKFDNDRYLALIRQLGYQANSFRDMMRGDMTRRQLVVTVVGSEFVLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R + Y V++ + A S+ ++++ + + PE + YI
Sbjct: 179 EAEYLAKIQGQTRDIRYHVVDAEPMLATVSVSDEEANTYYQQNQSLFVRPETISLDYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-------FPNQKEADEAFQSL 290
++ I++S++E + Y++NK +Y PE R ++ + +A+ L
Sbjct: 239 SANQLASAIQVSDEEAKTYYDENKAQYLQPEKRLAAHILVSLGDDEDAAKAKAEAIMTKL 298
Query: 291 KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
K G+ F LA ++ L F + + D +KG ++ ++ SF
Sbjct: 299 KAGEDFEALAKSDSDDSFSGEQGGKLDWFEQGVMEAP--FDQALFALEKGQYSDIVKTSF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEIS 405
GY I + +++ + T F+ VK I Q++ KA + +RL + ++ E +
Sbjct: 357 GYHIIKLLDLQAASTSPFEAVKDKIVAQIQQDKAVNEFYTLQQRLSDVSYEVPDTLAEAA 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + P+ + L D +
Sbjct: 417 KEVGVAVKTSPVFTR-----DNAPEPLNSADVLKAAFSNTVLLDGMNSDVIELGDNHVVV 471
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++ + A + +V + + K K E KA +++ +
Sbjct: 472 VRVNKHAAAGTMEFADVKATIVERLKQDKANELARDKAQEMMAAIKGG---------EIP 522
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVF-KVTNSK 580
A ++T Q++R + + +S+ F V + NG + V+ KV ++
Sbjct: 523 AEMITRTQLSRGE---QGIDTSIVSKAFEMAQPAEQFVVDTAALANGYAVVILDKVNQAE 579
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
L +++ ++IA LK+Q V
Sbjct: 580 SVDESLVTALKQRLNSQYSENDYRALIAALKAQAEV 615
>gi|307129932|ref|YP_003881948.1| peptidyl-prolyl cis-trans isomerase D [Dickeya dadantii 3937]
gi|306527461|gb|ADM97391.1| peptidyl-prolyl cis-trans isomerase D [Dickeya dadantii 3937]
Length = 626
Score = 257 bits (654), Expect = 6e-66, Method: Composition-based stats.
Identities = 115/639 (17%), Positives = 248/639 (38%), Gaps = 30/639 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ F++ G+ D L SG V Q++ +
Sbjct: 1 MMDNLRAAANNVVLKIILALIIGSFVLTGVGDYLIRGSG-DYAAKVNGQEITRAQLEQGV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + +G ++ L K++L L+ + Q+ +GL +V
Sbjct: 60 QNERSRQQEMLGENFSALAANEGYMQQLRKQVLSQLIDETLVVQYAHTLGLNISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F +D +++++ + G+ Y K L ++
Sbjct: 120 AIFSVPEFQTNN-RFDNDKYLAQVRQLGLTPDAYAQFLRKQLLTQQLIRGLGNTDFVLQQ 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
LD ++R++ ++ S+ + ++++ K+ Y APE ++SYI+
Sbjct: 179 ELDNLVAMASQDRTIRTATIDLSARARNQTVSDEEVKNFYDQNKNRYLAPEQFKVSYIML 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D K ++ N ++ A YE++K ++ PE + + + +A A + LKKG F
Sbjct: 239 DAASIMDKTKVDNADIAAYYEQHKSEFTQPERKKYSVIQLKTEADAKAALEQLKKGADFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + LG D L +KG + VI S GY+I +
Sbjct: 299 ALAKEKSTDIVSRRNGGDLGWMDDGSTVDE---IKQAGLKQKGQLSDVIKSSVGYLIIRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+ + EV+ D+A +++ K+ + +++ E + + ++ EK+ +I
Sbjct: 356 DDIQAQHVKALDEVRADLAEKVKREKSLDAFYSLQQKISEAASN--DNESLASAEKVANI 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL--FRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D+ +D + P + + V P + +++ +++ E
Sbjct: 414 KAVQTDWFTRDNVPAALNFQPVTQAIFGGSLVGENGTPGNNSDVISVEGDRAFVLRVTEH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L++V V + K K ++ +A +++ + + D S
Sbjct: 474 KPETTQPLDQVREQVVQTLKRQKAEQQAKVEAEKILADLYQGKT---DSMTAASLSFGAA 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKV--GPVQ 585
+++ + VF+ + + V+ + K
Sbjct: 531 KEMSSTGQTDV-----LAETVFAMQQPKKDKPSYAVAQDQAGNVVLIALDAVKPHVLSDD 585
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+K +F + L Q L D+++ L+SQ + +
Sbjct: 586 QKKQFGAQLEQSSVGALFDTLLTSLRSQAKIKYGSAAQE 624
>gi|27363507|ref|NP_759035.1| peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus CMCP6]
gi|27359623|gb|AAO08562.1| Peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus CMCP6]
Length = 619
Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats.
Identities = 120/631 (19%), Positives = 243/631 (38%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ L S S++ VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVSG-SSNSAAKVGNVEIGRGEFEMAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ A K +LD +++ LDQ E +GL +V
Sbjct: 60 QNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVRS 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F +D KF+ DV+ + L R G + + ++ + L R+ ++
Sbjct: 120 MILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRSQLLDALQTSEFTLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + + + R V + LN R + + +++++ K + PE ++SYI
Sbjct: 179 EVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKVSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKK 295
+++I IS+DE++ Y+++ +KY S E R V ++ +Q +A L G
Sbjct: 239 AADSLKQQITISDDEVKQYYQEHLDKYSSEEQRRVAHILIEGDDQAKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + LG ++ + D + ++ F+L GD T ++ FGY I
Sbjct: 299 FATLAQEKSDDFGSADNGGELGWIERDVM-DPAFEEAAFALKNVGDVTGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K F +V I +M KA ++ E LE+ E + K V
Sbjct: 358 KLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELEKVAFEYPDSLEEAS--KAV 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ DF + + + + + + + V++ ++
Sbjct: 416 GQQVKHTDFISQVDAPEILRTPAVTQ--AITSPEVKLDGLNSEAIEIAPEHIIVVRVDDA 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L EV V + VK ++ ++V I + G S
Sbjct: 474 RDETVLPLTEVQDQVAAELSQVKGEQQALELGTEVVTALKAGNT---AILQEKGLSFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
+I+R VF+ + VV + +
Sbjct: 531 EKIDRRSP--------LAQTVFAMAKPAAGNAVYGQSKDMEGNVVVVALEKVEESLEPVL 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L ++ + L S++A L++ +
Sbjct: 583 AQQISVQLQRVSAQRDLSSIVAILRANTDIE 613
>gi|238788012|ref|ZP_04631808.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia frederiksenii ATCC
33641]
gi|238723960|gb|EEQ15604.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia frederiksenii ATCC
33641]
Length = 628
Score = 256 bits (653), Expect = 7e-66, Method: Composition-based stats.
Identities = 122/637 (19%), Positives = 260/637 (40%), Gaps = 23/637 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + +
Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E G + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V
Sbjct: 60 QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDDQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F D KF ++ ++ + R G ++ + L ++ F +
Sbjct: 120 AIRQAPYFQT-DGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R V ++ + + A ++ L ++++ K+++ APE +IS+I
Sbjct: 179 EAQAMSALILQQRDVRLATIDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + KI ++ D++ A Y+++K Y PE R + F + EA A LKKG F
Sbjct: 239 DAAAMQDKITVTEDDIAAYYDQHKSSYGQPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+E+ + G P+ + + +L +KG + V+ S GY+I +++I
Sbjct: 299 AMAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP EV +A Q++ KA + +++ E + + ++ E+
Sbjct: 359 KPEQVKPLSEVHDALAKQVKQEKAVDAYYSLQQKVSEA--ATSDNESLASAEEAAGTKAK 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D +V P + + V P S + + ++I P
Sbjct: 417 QTGWFTRDAVPADVNFKPVIQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+V V + K K + +++ + + K G S +
Sbjct: 477 GIEPFTQVRDQVAELVKRQKAEQVARVDGEKILTALKQGKG--DEAMKAAGISFGEKKTL 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R ++++ + +F+ P V + + V+ ++ + G P E
Sbjct: 535 SRAPDDDQ-----LVQTIFALPHPQKDQLVYGLSQDRQDNIVLIELLSVTPGKLPEGEMK 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
FI+ + + + D+++A L Q ++ + Q+
Sbjct: 590 TFIAKMQEGSSGVTFDALMANLHKQATIKMGPAEQQQ 626
>gi|320156965|ref|YP_004189344.1| peptidyl-prolyl cis-trans isomerase ppiD [Vibrio vulnificus
MO6-24/O]
gi|319932277|gb|ADV87141.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio vulnificus
MO6-24/O]
Length = 619
Score = 256 bits (653), Expect = 8e-66, Method: Composition-based stats.
Identities = 120/631 (19%), Positives = 243/631 (38%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ L S S++ VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVSG-SSNSAAKVGNVEIGRGEFEMAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ A K +LD +++ LDQ E +GL +V
Sbjct: 60 QNERNRMQSQLGDYFSQLLADPAYVESFRKSVLDRMINDVLLDQHAESLGLRISDAQVRS 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F +D KF+ DV+ + L R G + + ++ + L R+ ++
Sbjct: 120 MILAMPEFQ-QDGKFNQDVYQATLRRAGYSPDSFAEYMRRELIRSQLLDALQTSEFTLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + + + R V + LN R + + +++++ K + PE ++SYI
Sbjct: 179 EVDAEGKLFTQTRDVRTVTLNIRDFADKVTLTEEDIQKYYDENKSRFTRPEQVKVSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKK 295
+++I IS+DE++ Y+++ +KY S E R V ++ +Q +A L G
Sbjct: 239 AADSLKQQITISDDEVKQYYQEHLDKYSSEEQRRVAHILIEGDDQAKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + LG ++ + D + ++ F+L GD T ++ FGY I
Sbjct: 299 FAALAQEKSDDFGSADNGGELGWIERDVM-DPAFEEAAFALKNVGDVTGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K F +V I +M KA ++ E LE+ E + K V
Sbjct: 358 KLEELKEPVVKPFSDVAAQIKQEMIDQKAVDQFYELQSELEKVAFEYPDSLEEAS--KAV 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ DF + + + + + + + V++ ++
Sbjct: 416 GQQVKHTDFISQVDAPEILRTPAVTQ--AITSPEVKLDGLNSEAIEIAPEHIIVVRVDDA 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L EV V + VK ++ ++V I + G S
Sbjct: 474 RDETVLPLTEVQDQVAAELSQVKGEQQALELGTEVVTALKAGNT---AILQEKGLSFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
+I+R VF+ + VV + +
Sbjct: 531 EKIDRRSP--------LAQTVFAMAKPAAGNAVYGQSKDMEGNVVVVALEKVEESLEPVL 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L ++ + L S++A L++ +
Sbjct: 583 AQQISVQLQRVSAQRDLSSIVAILRANTDIE 613
>gi|330859944|emb|CBX70273.1| peptidyl-prolyl cis-trans isomerase D [Yersinia enterocolitica
W22703]
Length = 628
Score = 256 bits (653), Expect = 8e-66, Method: Composition-based stats.
Identities = 122/637 (19%), Positives = 261/637 (40%), Gaps = 23/637 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + +
Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V
Sbjct: 60 QSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F D KF ++ ++ + R G ++ + L ++ F +
Sbjct: 120 AIRQAPYFQT-DGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R V L+ + + A ++ L ++++ K+++ APE +IS+I
Sbjct: 179 EAQAMSALILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + KI ++ +++ A Y+++K Y PE R + F + EA A LKKG F
Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+E+ + G P+ + + +L +KG + V+ S GY+I ++ I
Sbjct: 299 AIAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNGI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP+ EV +A Q++ KA + +++ E + + ++ E+
Sbjct: 359 KPAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEA--ATSDNESLASAEEAAGAKAK 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D E+ P + + V P S + + ++I P
Sbjct: 417 QTGWFTRDAVPAEINFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V V + K K + +L+ + + K G S +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKLLTALKQGKG--EEAMKAAGISFGEKKTL 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R ++++ + +F+ P V + + V+ ++ + G P E
Sbjct: 535 SRAPDDDQ-----LVQTIFALPHPQKDQPVYGLSQDRQDNIVLIELLSVTPGKLPESEMK 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
FI+ + + + D+++A L+ Q ++ + Q+
Sbjct: 590 NFIAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 626
>gi|85058653|ref|YP_454355.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Sodalis
glossinidius str. 'morsitans']
gi|84779173|dbj|BAE73950.1| peptidyl-prolyl cis-trans isomerase D [Sodalis glossinidius str.
'morsitans']
Length = 617
Score = 256 bits (652), Expect = 1e-65, Method: Composition-based stats.
Identities = 110/630 (17%), Positives = 241/630 (38%), Gaps = 24/630 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ F++ G+ + L G V Q++ S +
Sbjct: 1 MMDNLRAAANHVVLKIILGLIAFSFVLTGVGNYLIGGDG-DYAAKVNGQQISRSQLEQAV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E + +G + A + +++L L+ LDQ+ + +GL ++ I
Sbjct: 60 QNERNRQQEAMGEQFSQLAANEGYMRQQVLSQLIDETLLDQYADKLGLAISDDQIKQAIF 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F +D KF + F S + G++ +Y K L ++ G D
Sbjct: 120 AILAFRTED-KFDNAKFRSLIGNMGLSPDQYATLMRKQLLTQQLIQGIGGTGFLLPAETD 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R + + A S+ + + YK+ Y +PE ++SYI D
Sbjct: 179 RLLEVAVQTREARLAMFAIAALAAKQTASDDEIQASYNAYKNQYLSPEAFKVSYIPMDAE 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ K + E+QA Y+++ +++ P + + ++ +A++ + L++G F LA
Sbjct: 239 TMQTKTTVDEQEIQAWYDQHHDQFTVPGRKRYSIIQSKSENDANDWLKQLQQGADFASLA 298
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KKGDFTPVIHGSFGYVIAHVSNIKP 358
+ + G ++ D D + +KG + VI S G++I + +++P
Sbjct: 299 KAHSTDVVSAKNGG-DIGWMSDSDTLDELKQANLSQKGQLSGVIKSSVGFLIIRLDDMQP 357
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ V ++A +++ KA + +++ + + + ++ E I
Sbjct: 358 AQVSPLSAVHDEVAAKVKQEKAIDAYYALQQKVSDAASN--DNETLASAETAAGIKAQQT 415
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D+ D + K +F S + + ++I E P R +
Sbjct: 416 DWFSHDDVPAALNYDAVK----QVLFQGSLLGSNSDVITVDGNRSFVIRIAEHRPERVQP 471
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
LE+V V+++ K K E+ A + ++ ++ + + G S Q + +
Sbjct: 472 LEDVRARVEQEVKRQKALEQARVDAEKALVALKQDKGT--EALQAAGLSFSAPQQFDSAN 529
Query: 539 NENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVG--PVQEKDKFIS 592
G VF+ P V+ + + Q++ +F+
Sbjct: 530 Q-----GDPLAQTVFTLPQPPHGKSSYGMASNAQGDIVLIALDSVTPRTLEEQQRKQFVD 584
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
L Q M D+++ L+++ + +
Sbjct: 585 QLNQGMTGVAFDALLENLRAEAKIKMGAAA 614
>gi|62179064|ref|YP_215481.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|62126697|gb|AAX64400.1| peptidyl prolyl isomerase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
Length = 623
Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats.
Identities = 124/638 (19%), Positives = 270/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +L++E K GK+ + K G S
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKSAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + S P + + + N + V+ K G P +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|323495052|ref|ZP_08100141.1| peptidyl-prolyl cis-trans isomerase D [Vibrio brasiliensis LMG
20546]
gi|323310709|gb|EGA63884.1| peptidyl-prolyl cis-trans isomerase D [Vibrio brasiliensis LMG
20546]
Length = 619
Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats.
Identities = 121/631 (19%), Positives = 261/631 (41%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + S ++ VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSN-NSAAKVGNVEIGRGEFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ + K +LD +V+ L+Q E +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLLEQHAESLGLRVSDSQVRT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF +++ + L R G + + + ++ + L R ++ G
Sbjct: 120 LILEMPQFQV-DGKFDQEIYQTALRRAGFSAESFAEYLRRDLVRNQLMTAIQGSDFALPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + + L+ A A+ S ++ ++++ + Y PE +++Y+
Sbjct: 179 EVEAQSKLLTQTRDIKKVTLSLADFAAKAELSEQEISDYYQQNPERYTRPEQVKVAYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKK 295
+ ++ IEIS+++ + Y+++ +KY S E R V ++ +Q +A L G
Sbjct: 239 SAQQLKENIEISDEQAEKYYQEHIDKYSSEEQRRVSHILIEGDDQAKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LAEE+ SLG ++ + D S ++ F+L K G+ T ++ FGY I
Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERDVM-DPSFEEAAFALTKVGETTGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K S +QEV +I +++ +A ++ E LE+ + + K +
Sbjct: 358 KLDELKDSVAKPYQEVAAEIKQELKDQQAIDQYYELQSELEKVAFEYPDSLDDA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ DF + + + + ++ + + + + V++++S
Sbjct: 416 NAEIHTTDFISQVDAPELLKTPAVLQAIVS--PEVKEDGLNSEVIEVAPEHVIVVRVEDS 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
LE+V +DV K VK + A LV E + ++ G + T
Sbjct: 474 RDETVLPLEQVRSDVTKALANVKGEQTAIELAQNLVAELKEGKQDL---LSESGLAFGET 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIEN-GLSYVVFKVTNSKVG-PVQE 586
++R VFS V ++ VV ++T Q
Sbjct: 531 ETLDRSSPLADV--------VFSMVKPVDGGVGFAQAKDLNGDIVVVELTKVASDFDPQY 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L+Q+ + L +I+ L+ +
Sbjct: 583 NQQIGAQLSQVNAQQDLTGLISILRKTIDIE 613
>gi|261253455|ref|ZP_05946028.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio orientalis CIP
102891]
gi|260936846|gb|EEX92835.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio orientalis CIP
102891]
Length = 619
Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats.
Identities = 117/631 (18%), Positives = 248/631 (39%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + S +T VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSN-NTAAKVGNVEIGRGEFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ + K +LD +V+ L+Q E +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDVLLEQHAESLGLRVSDTQVRT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF +++ + L R G N + + ++ + L R ++ G
Sbjct: 120 LILEMPQFQ-IDGKFDQEIYQTALRRAGFNAESFAEYLRRDLVRNQLLTAIQGSDFTLPS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R V + L+ A A S + ++++ + Y PE +++YI
Sbjct: 179 EVEAQSKLLTQTREVKKVTLSLEDFAAKAQLSEDEINDYYKQNPERYTRPEQVKVAYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKK 295
+ + I++S ++ + Y+++ +KY S E R V ++ +Q +A L G
Sbjct: 239 SAQQLKDDIQVSEEQAKQYYQEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LAEE+ SLG ++ + D + D+ F+L K GD T ++ FGY I
Sbjct: 299 FATLAEEKSDDFGSASEGGSLGWIERDVM-DPAFEDAAFALTKVGDTTGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K S + EV +I +++ +A ++ E LE+ + + + +
Sbjct: 358 KLDELKDSVAKPYAEVAAEIKQELKDQQAVDQYYELQSELEKVAFEYPDSLDDA--AQAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + DF + + + + ++ + + + + V+++++
Sbjct: 416 NAKIHTTDFISQVDAPELLKTPAVLQAIVS--PEVKEDGLNSEVIEVAPEHVIVVRVEDA 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L +V V VK + A++LV E + + K G T
Sbjct: 474 RDEMVLPLADVREQVTTTLAKVKGEQSAIELADKLVAELKEGKQGL---LKESGLVFGET 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVGPVQEK 587
++R VFS VV ++T+
Sbjct: 531 ETVDRSSPLADV--------VFSMVKPEEGKVEFAQAKDLNGDIVVVELTDVSSMFNTMY 582
Query: 588 -DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ +TQ + L +I+ L+ +
Sbjct: 583 NEQIAQQMTQANAQQDLSGLISILRKTIDIE 613
>gi|318604634|emb|CBY26132.1| peptidyl-prolyl cis-trans isomerase ppiD [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 628
Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats.
Identities = 121/637 (18%), Positives = 260/637 (40%), Gaps = 23/637 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + +
Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V
Sbjct: 60 QSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F D KF ++ ++ + R G ++ + L ++ F +
Sbjct: 120 AIRQAPYFQT-DGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R V L+ + + A ++ L ++++ K+++ APE +IS+I
Sbjct: 179 EAQAMSALILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + KI ++ +++ A Y+++K Y PE R + F + EA A LKKG F
Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+E+ + G P+ + + +L +KG + V+ S GY+I ++ I
Sbjct: 299 AIAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNGI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP+ EV +A Q++ KA + +++ E + + ++ E+
Sbjct: 359 KPAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEA--ATSDNESLASAEEAAGAKAK 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D E+ P + + V P S + + ++I P
Sbjct: 417 QTGWFTRDAVPAEINFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V V + K K + +L+ + + K G S +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKLLTALKQGKG--EEAMKAAGISFGEKKTL 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R ++++ + +F+ P + + V+ ++ + G P E
Sbjct: 535 SRAPDDDQ-----LVQTIFALPHPQKDQPAYGLSQDRQDNIVLIELLSVTPGKLPESEMK 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
FI+ + + + D+++A L+ Q ++ + Q+
Sbjct: 590 SFIAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 626
>gi|16759432|ref|NP_455049.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29142796|ref|NP_806138.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213160790|ref|ZP_03346500.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213425852|ref|ZP_03358602.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. E02-1180]
gi|213646001|ref|ZP_03376054.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. J185]
gi|213850134|ref|ZP_03381032.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. M223]
gi|289829271|ref|ZP_06546883.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|25320965|pir||AG0558 peptidylprolyl isomerase (EC 5.2.1.8) - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16501723|emb|CAD08911.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29138428|gb|AAO69998.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 623
Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats.
Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +L++E K GK + K G S
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + S P + + + N + V+ K G P +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|158520285|ref|YP_001528155.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
oleovorans Hxd3]
gi|158509111|gb|ABW66078.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
oleovorans Hxd3]
Length = 631
Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats.
Identities = 109/646 (16%), Positives = 248/646 (38%), Gaps = 37/646 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R+ + + + K L ++ + F+ G+ + F T +V + V F ++
Sbjct: 1 MLQFMRQKASSIIIKGVLSLVILAFIFLGIGN--FREQQEVTAATVNEEIVTGREFQYTY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ L Q+ G +N + + + L ++ ++ L+S + Q + +GL + I+
Sbjct: 59 QRLLDTYRQQFGGALNDDLLKMLNLKEQAMNQLISEKIILQQADKLGLNVSDSELAATIS 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + +F + L + + + L + + + S+
Sbjct: 119 SIPAFQN-NGRFDKTRYNRLLQSNRMTAAAFEQSQKQGLLVDKLRTLITDSVLVSDNEAR 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + + + DP+ A + ++E++KD Y+ PE ++I+Y+
Sbjct: 178 QWFDWENARVKIT-AAVFAAEGRTDVDPAEAAVAAYYEEHKDQYKTPEKRKITYVRVAPA 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-------- 292
+++++ +E+ Y+ N++ Y++ E ++ +++ADEA +
Sbjct: 237 RYLSEVKVTEEEIADFYQANQDFYWNEETVEARHILISLEQDADEARVEEARQKAADIYV 296
Query: 293 -----GKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
GK F + A + + LG+F++E + + G+ + +
Sbjct: 297 MVTDGGKDFAETARQYSEGPSAGEGGYLGAFTREDMVAPFSEKAFSMA--PGEISEPVRS 354
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FG+ I V + +FT EV+ DI Q+ KA E E+ L + S+++
Sbjct: 355 QFGWHIIKVEKVNAAFTTPLDEVRADIEKQLLDQKAGEYAYEEALTLFDMALDTDSVEQA 414
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + ++ + + +A + ++ + F D + V ++
Sbjct: 415 AASRNLTAVTTDAIT------QNDTLADVEAGRTMVRQAF--DFVEKEISDVITEGNTHF 466
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
Q+ E +PA LE V V +D + E ++A ++ + K G+
Sbjct: 467 LFQVTEVMPAAVPPLENVQARVIEDLREQMRKEAAQAEAESVLEK-VKAGQPLEAACAGT 525
Query: 525 GASLLTTNQINRMDNENKFFGYDGIS-QVFSGPVEM-VKCFPIENGLSYVVFKVTNSKVG 582
A ++ T R +S F V +E Y V + + K
Sbjct: 526 QAEIVATGFFGRTGAVPDIGNEPALSRAAFDLTKNQPVAPNVVEGRTGYYVVVLNDQKAP 585
Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
E +D + LT ++ S + ++ + +T+ + ++
Sbjct: 586 EASEFEEKRDAVVKRLTAQKKNEVFMSWLKTMRQESDITIDEAFLR 631
>gi|332160753|ref|YP_004297330.1| peptidyl-prolyl cis-trans isomerase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325664983|gb|ADZ41627.1| peptidyl-prolyl cis-trans isomerase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 628
Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats.
Identities = 121/637 (18%), Positives = 260/637 (40%), Gaps = 23/637 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + +
Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V
Sbjct: 60 QSERSRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F D KF ++ ++ + R G ++ + L ++ F +
Sbjct: 120 AIRQAPYFQT-DGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R V L+ + + A ++ L ++++ K+++ APE +IS+I
Sbjct: 179 EAQAMSALILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + KI ++ +++ A Y+++K Y PE R + F + EA A LKKG F
Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+E+ + G P+ + + +L +KG + V+ S GY+I ++ I
Sbjct: 299 AIAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNGI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP+ EV +A Q++ KA + +++ E + + ++ E+
Sbjct: 359 KPAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEA--ATSDNESLASAEEAAGAKAK 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D E+ P + + V P S + + ++I P
Sbjct: 417 QTGWFTRDAVPAEINFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V V + K K + +L+ + + K G S +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKLLTALKQGKG--EEAMKAAGISFGEKKTL 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R ++++ + +F+ P + + V+ ++ + G P E
Sbjct: 535 SRAPDDDQ-----LVQTIFALPHPQKDQPAYGLSQDRQDNIVLIELLSVTPGKLPESEMK 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
FI+ + + + D+++A L+ Q ++ + Q+
Sbjct: 590 NFIAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 626
>gi|168465546|ref|ZP_02699428.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|195631887|gb|EDX50407.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
Length = 623
Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats.
Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGHMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDTYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +L++E K GK + K G S
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + S P + + + N + V+ K G P +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|16763833|ref|NP_459448.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|161615353|ref|YP_001589318.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Paratyphi B str. SPB7]
gi|167551732|ref|ZP_02345485.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167990436|ref|ZP_02571536.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168231441|ref|ZP_02656499.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168240281|ref|ZP_02665213.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168261111|ref|ZP_02683084.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168818936|ref|ZP_02830936.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194442454|ref|YP_002039695.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194448749|ref|YP_002044487.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194469679|ref|ZP_03075663.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197262652|ref|ZP_03162726.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|200390757|ref|ZP_03217368.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|207855932|ref|YP_002242583.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|16418959|gb|AAL19407.1| peptidyl prolyl isomerase [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|161364717|gb|ABX68485.1| hypothetical protein SPAB_03124 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401117|gb|ACF61339.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194407053|gb|ACF67272.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194456043|gb|EDX44882.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|197240907|gb|EDY23527.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|199603202|gb|EDZ01748.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|205323503|gb|EDZ11342.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205330915|gb|EDZ17679.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205333949|gb|EDZ20713.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205340141|gb|EDZ26905.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205344153|gb|EDZ30917.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205350111|gb|EDZ36742.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206707735|emb|CAR32020.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261245735|emb|CBG23532.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267992168|gb|ACY87053.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhimurium str.
14028S]
gi|301157063|emb|CBW16547.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312911485|dbj|BAJ35459.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320084726|emb|CBY94517.1| putative protease maturation protein [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321226030|gb|EFX51081.1| Peptidyl-prolyl cis-trans isomerase ppiD [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322713525|gb|EFZ05096.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323128772|gb|ADX16202.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332987401|gb|AEF06384.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhimurium str. UK-1]
Length = 623
Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats.
Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +L++E K GK + K G S
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + S P + + + N + V+ K G P +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|161504371|ref|YP_001571483.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. arizonae serovar 62:z4,z23:-- str.
RSK2980]
gi|160865718|gb|ABX22341.1| hypothetical protein SARI_02482 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 623
Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats.
Identities = 120/638 (18%), Positives = 267/638 (41%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D +F ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGRFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V ++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREATIDVNALAAKQQATDQEVSSYYDQNKTRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHLDQFTQPERHRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDVQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSHDNLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L V V K K ++ A +L++E K GK + K G S
Sbjct: 472 KPEAVKPLAAVKEQVIALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + S P + + + N + V+ + K G P +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNIVLLALDEVKAGSMPEAQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMMQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|317485995|ref|ZP_07944850.1| ppic-type ppiase domain-containing protein [Bilophila wadsworthia
3_1_6]
gi|316922768|gb|EFV43999.1| ppic-type ppiase domain-containing protein [Bilophila wadsworthia
3_1_6]
Length = 629
Score = 255 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 103/644 (15%), Positives = 231/644 (35%), Gaps = 39/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML++IR +++W KI ++ + F+ WG+ + S+ +++V + + F +
Sbjct: 1 MLDLIRANAQSWGVKIAFGIIILVFVFWGVGG--LTGGPSTVILTVNGEPITIQEFQRKY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q + + +++ +++ L ++++ NL+ + Q + +G+ + I
Sbjct: 59 EQLEQQVRAQY-PDLDAAGLKAMQLKQQLIQNLILENLIMQEAKRVGIVVTPVELRKLIE 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF D +V + + + + + G +
Sbjct: 118 SFPAFHNAEGKFDPDAYVRVIKAQRNTPGNFEAELRNNMLMNKLRADVTAGAFVPEAEVR 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R+ E R ++Y+ + +A + ++E + ++ P + Y+L
Sbjct: 178 DLFRYEGERRILEYVFYPLEDYTSKVTVDDAQIKDYYEANQASFTVPPQADVEYLLIGAE 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQKEADEAFQ 288
IS+ + YEKN ++ +PE+ + + + +E +
Sbjct: 238 ALAAAQNISDAAVSEYYEKNAAQFATPEMVRARHILILSDAKASAEDQAKAKAKIEEIAK 297
Query: 289 SLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
+K G+ F ++A+E + LG F+ + D G+ + +
Sbjct: 298 RIKAGEDFGEVAKEVSEDPGSGPQGGELGWFAHGQMVPE--FDKASFALNPGELSEPVKT 355
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FG+ + + K + EVK I ++ +AS KV+E ++++ + G S+ E
Sbjct: 356 QFGWHLIQLEEKKAAGQKPLDEVKDQIRTRLAQDEASGKVQEALEQVQLAVIGGKSLKEA 415
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
K+ + LV+ + + K + L + D G Y+
Sbjct: 416 GEPLKLAPQETGLVNTT------ELTEKMGIKPENLPALLAAKPGTVLDTPFVTKTG-YV 468
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
++ ES P + L+ V D+K + K AN + D+ K L
Sbjct: 469 IAKVNESKPQTVKPLDAVKDDIKARLQQDKARTLAFEAANA------ERKTFTADLPKEL 522
Query: 525 GASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
L T + R + + F+ V V+ +V
Sbjct: 523 QGKLKKTEPVGRQGYMGELGMNAELAKAAFAAKVNEWFPVAYTLDGGAVIARVAEVVTPS 582
Query: 584 VQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
++ +T + + ++ L+S + + + I
Sbjct: 583 DEDWKTAAPQITDAVLNAKREQMFRGFLSLLRSNAKIELKNETI 626
>gi|119471187|ref|ZP_01613719.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
[Alteromonadales bacterium TW-7]
gi|119445843|gb|EAW27125.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
[Alteromonadales bacterium TW-7]
Length = 633
Score = 255 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 126/644 (19%), Positives = 252/644 (39%), Gaps = 31/644 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ VAKI L + + F + G+ L + V V K+ + F ++
Sbjct: 1 MLEKIREGSQGPVAKIILGAVILSFALAGIGSYL-GQTTEQPVAEVNGVKISQTEFNRAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q+ G ++ + + ++D LV Q ++GL V
Sbjct: 60 QNERNRLEQQFGEYFTQIAADPNYMAQIRQGVIDRLVQQELQSQLAAELGLRVSDDTVRK 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF++D ++ + + + ++ + ++R+ +V G
Sbjct: 120 TILELPYFQLGD-KFNNDRYLQVIRQMNFQPDTFREYLREDMTRSQLVSAVAGTDFALES 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L A + RS+DY+V+N + + S ++ +++ + +PE ++Y+
Sbjct: 179 ELKSAIALQQQTRSIDYLVINKESLADNVEVSEQEVSDYYDLNASQFLSPELISVNYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------FQSL 290
++ ++++A YE+NK +Y PE R V ++ N ++ D A + L
Sbjct: 239 KAENIVV-GSVTEEDVKASYEQNKAQYVEPEKRRVSHILIDNSEDDDAAKAKVDALYAEL 297
Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
++G F +LAE + +G + + + D + D+ FSL KGDF+ V+ FG
Sbjct: 298 QQGADFAELAESSSDDIVSAEMGGDLDWIERDVMDPAFEDAAFSLEAKGDFSEVVASEFG 357
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y I +++I+P F +VK D+ ++ + + + + + + +
Sbjct: 358 YHIIKLTDIQPQQVKPFDDVKADLRAELERAEKIDAFYDKQTEMGAIAFEISDRLDDAAE 417
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + + + A+ + + + + L D + V+
Sbjct: 418 VAELDVQSTPLLALNALPEPLNTPAVITALTSVDLL----EDKVNSEVIELGDEHIVIVR 473
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
I E PA + L +V +K KT+E KA L E + GK+ DI G +
Sbjct: 474 INEHQPASTKPLSDVSEQIKTRLVNDKTSELAKDKARSLFAEI-QAGKSLNDIATEQGLT 532
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVG-- 582
L +Q+NR +SQ F V N + + +
Sbjct: 533 LRQESQLNRQSF---AVSPAIVSQAFKMAHPADTAVVDVVDLNNGDAAIVALNSVADATV 589
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ +T I LK++ ++ ++++
Sbjct: 590 TADIDPQAKQSITMAQANKNYMVFIESLKAKA--ELNLPVVEQA 631
>gi|168237567|ref|ZP_02662625.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194737891|ref|YP_002113483.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|194713393|gb|ACF92614.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197289587|gb|EDY28950.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 623
Score = 255 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKARFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +L++E K GK + K G S
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + S P + + + N + V+ K G P +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|84387739|ref|ZP_00990755.1| peptidyl-prolyl cis-trans isomerse D [Vibrio splendidus 12B01]
gi|84377422|gb|EAP94289.1| peptidyl-prolyl cis-trans isomerse D [Vibrio splendidus 12B01]
Length = 621
Score = 255 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 111/631 (17%), Positives = 237/631 (37%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYITGGGN-NAAAKVGNTEIARGEFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ A K +LD +++ L+Q E +GL ++
Sbjct: 60 QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F +F +V+ S L R G + + + ++ + L R +V G
Sbjct: 120 MILEMPQFQTAG-QFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + + R + + L+ + + ++ + Q++ + Y PE ++SYI
Sbjct: 179 EIDTQSKLIAQTRDIRTVTLSVADLAKGIELTDEQIEQYYSENPQAYTRPEQAKVSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++E+S++E Q Y+++ +KY + E R V ++ EA L G
Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298
Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LAEE+ LG ++ + D + D+ F+L GD T ++ FGY I
Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERDVM-DPAFEDAAFALENIGDTTGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K S + EV +I ++ A ++ E LE+ + S +
Sbjct: 358 KLDEVKASQAQPYTEVAAEIKQELLDQHAVDQFYEQQTELEKVAFEFPDSLDDSAE--AI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + DF + + + + +L + + + + V+++E+
Sbjct: 416 NAKITTTDFISQVDAPEVLMTPAVMQAILS--PEVKEDGLNSEVIEVAPEHVIVVRVEET 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L EV V V+ ++ LV E + + +
Sbjct: 474 RDETVLPLAEVKDQVVAALSAVQAEQQAVELGVSLVNELKQGN---EAVLADNNLEFTEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI----ENGLSYVVFKVTNSKVG-PVQE 586
I+R + VF+ + + VV +++
Sbjct: 531 ETIDRNSP--------LAASVFALAKPEAGQAVFGQSKDQDGNIVVVELSKVTAEINPAY 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L ++ N+ L +V+ L+ V
Sbjct: 583 STQIGAQLERVGNQQDLTNVLNVLRKNADVE 613
>gi|123443338|ref|YP_001007312.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|122090299|emb|CAL13165.1| peptidyl-prolyl cis-trans isomerase D [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 628
Score = 255 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 123/637 (19%), Positives = 263/637 (41%), Gaps = 23/637 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + +
Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E G + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V
Sbjct: 60 QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F D KF ++ ++ + R G ++ + L ++ F +
Sbjct: 120 AIRQAPYFQT-DGKFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R V L+ + + A ++ L ++++ K+++ APE +IS+I
Sbjct: 179 EAQAMSELILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + KI ++ +++ A Y+++K Y PE R + F + EA A LKKG F
Sbjct: 239 DAAAMQDKITVTEEDIAAYYDQHKSTYTKPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+E+ + G P+ + + +L +KG + V+ S GY+I +++I
Sbjct: 299 AIAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP+ EV +A Q++ KA + +++ E + + ++ E+
Sbjct: 359 KPAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEA--ATSDNESLASAEEAAGAKAK 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D EV P + + V P S + + ++I P
Sbjct: 417 QTGWFTRDAVPAEVNFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V V + K K + +++ + + K G S +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKILTALKQGKG--EEAMKAAGISFGEKKTL 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R ++++ + +F+ P V + + V+ ++ + G P E
Sbjct: 535 SRAPDDDQ-----LVQTIFALPHPQKDQPVYGLSQDRQDNIVLIELLSVTPGKLPEGEMK 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
FI+ + + + D+++A L+ Q ++ + Q+
Sbjct: 590 NFIAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 626
>gi|239908536|ref|YP_002955278.1| peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1]
gi|239798403|dbj|BAH77392.1| peptidyl-prolyl cis-trans isomerase [Desulfovibrio magneticus RS-1]
Length = 650
Score = 255 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 105/645 (16%), Positives = 241/645 (37%), Gaps = 33/645 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RK +++W KI ++ + F+ WG+ + F+ ++ + +V Q + + +
Sbjct: 1 MLDPMRKYAQSWGIKIVFGLIIIVFVFWGVGN--FNGDRATVLATVNGQPILIKDYEKQY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ L + + V + + G ++ N+V+ L+ + +G+ G + EIA
Sbjct: 59 QENL-RLVKNKNPNVTDKDLQDGGFRWQVFTNMVTTKLLEDQAKTLGIAVTAGELRSEIA 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F + +F + + L ++ E+ + + L + + +
Sbjct: 118 KIPAFQNESKQFDAKRYENLLKANDVSPGEFEADFRQQLLLEKLAAFVGLPAQVAEAEAR 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
F E + YI S+ + +++E KD + P +I ++ F
Sbjct: 178 SIFDFMREQAIIKYIPFAATDFTKGVTISDEQIAKYYEARKDEFATPAQVKIDFVEFTPK 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD------------EAFQ 288
K EI++ +++A+++ N++KY PE V ++ +A
Sbjct: 238 AMAKPAEITDTDIEADFKANQKKYERPEQVRVRHILMMLPPDAPQEVVDAAEKRLKAMAD 297
Query: 289 SLKKGKKFIQLAEEQGKSLSDI---SLGSFSKEYIPDV-SLADSIFSLAKKGDFTPVIHG 344
++KGK F L + + I K +P + + KK + + +
Sbjct: 298 DVRKGKDFATLIPKDPANADGIIGEDWAWLPKGSLPKEFAPFEEKAFTLKKDEVSDPVRT 357
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
S G + + S + EVK +I + +A++K+ + ++E L+ G ++
Sbjct: 358 SLGLHLIQGGEKQASGQRALAEVKDEIRADLAEQRAADKLTKSLDAIQEKLSSGEPLEAA 417
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
EK+ K A + E + +F + D ++ DG ++
Sbjct: 418 VAAEKLAVKTSAFF------AKDAPPAELGLSEPAVEAIFALKKGQTADAPLSTQDG-FV 470
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
V+ E L+ V + +K + + +KA + + + + + +
Sbjct: 471 VVRAAEVKEPGFEPLDAVKSVIKGRLTDEEAMKLAKAKAEE-TAKAMETEDGLKKVLADY 529
Query: 525 GASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ T+ R F +YVV + +
Sbjct: 530 KDKIQTSAPFTRQGFIPGLGMSPVLAQTAFEAKGPGWFKTAFGVSGAYVVAGLDKTVPAD 589
Query: 584 ----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV-HDNLI 623
+EK+++++ LTQ +L + + L+ V + +D ++
Sbjct: 590 ISLWDKEKERWVATLTQSKQTELFRAYLQTLQEAARVEIVNDAIL 634
>gi|224582290|ref|YP_002636088.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Paratyphi C strain
RKS4594]
gi|224466817|gb|ACN44647.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
Length = 623
Score = 255 bits (649), Expect = 2e-65, Method: Composition-based stats.
Identities = 125/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +L++E K GK + K G S
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
+NR + + S P + + + N + V+ K G P +K
Sbjct: 530 KTLNRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|238759258|ref|ZP_04620425.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia aldovae ATCC 35236]
gi|238702545|gb|EEP95095.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia aldovae ATCC 35236]
Length = 628
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 121/638 (18%), Positives = 260/638 (40%), Gaps = 23/638 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ L S V Q + + +
Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DYAAKVNGQDISRAQLEQAM 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E G + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V
Sbjct: 60 QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAQKLGLSASDAQVKE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F + KF ++ ++ + R G +++ + L ++ F +
Sbjct: 120 AIRQAPYFQTDN-KFDNNKYLELVNRMGYTPEQFAQLQRQQLINQQLLQAFGDTGFVLPI 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R V ++ + + A ++ L ++E+ K+++ APE ++S+I
Sbjct: 179 EAQAMSELILQQRDVRLATIDLKALQAQQKVTDEELKAYYEQNKNSFIAPEQMKVSFIAM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + KI ++ +++ A YE++K Y PE R + F + EA A LKKG F
Sbjct: 239 DAAAMQDKITVTEEDIAAYYEQHKSSYTQPERRNYSVIQFKTEAEAKAALDELKKGADFA 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+E+ + G P+ + + +L +KG + V+ S GY+I +++I
Sbjct: 299 AMAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP EV + +A Q++ KA + +++ E + + ++ E++
Sbjct: 359 KPELVKPLSEVHEALAKQVKQEKAVDAYYALQQKVSEA--ATSDNESLASAEEVAGAKAQ 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D EV P + + V P S + + ++I P
Sbjct: 417 QTGWFTRDAVPTEVNFKPVVQAIFDGGLVGESGAPGSNSDVITVDGDRAFVIRIVGHKPE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V V + K K +E +++ + + K G + +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQEARLDGEKILTALKQGKG--EEAMKAAGLTFGEKKTL 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R + G + +F+ V + + V+ ++ + G P E
Sbjct: 535 SRAPD-----GDRLVQTIFALAHPQKDQPVYGLSQDRQDNIVLIELLSVTPGKLPEGEMK 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
F + + + + D+++A L Q ++ + Q+
Sbjct: 590 TFTAKMAEGASNVTFDALMANLHKQATIKMGPAEQQQA 627
>gi|220905632|ref|YP_002480944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219869931|gb|ACL50266.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 639
Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats.
Identities = 110/650 (16%), Positives = 219/650 (33%), Gaps = 39/650 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR S++ K+ ++ + F+ WG+ + S + V V + F ++
Sbjct: 1 MLEYIRDKSQSLGVKLAFGLIILVFVFWGVGN-FNDRSSGTLVAVVNGDPISMREFELAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + + E+ + L ++IL +L++ L Q G+ + +
Sbjct: 60 RNAEENLLR-SNPGLTREQLKQQQLGRQILRDLITQVLLSQEAARTGVSITPLELRMAVG 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F + +F +V+ LA + + ++ ++ L R + M
Sbjct: 119 NIKGFQNEKGQFDPEVYTRVLAAQRMAPAQFEQDMSRDLLRQKIFAMVTAPAWVDPAESQ 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ F E R VDYI + A PS+ + ++E +K + P ++Y+L
Sbjct: 179 KRFEFLREKRDVDYIFIPASDFAASVKPSDEEVQAYYESHKAQFAIPARADVAYVLVSPQ 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQ 288
+ K IS+ + Y N ++ E ++ P ++A E
Sbjct: 239 DLVKASGISSAAAEKWYADNAARFEQQEEVKAAHILVPLAEDASEADVKKAQEQAAAIEA 298
Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
LK GK F +A+ + LG + + G + +
Sbjct: 299 ELKAGKSFAAVADAHNGPNAAGPGGELGWLKRGTTVKPFEDAA--FALAPGKVSAPVRSQ 356
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG I V K F++V+ ++ M + ++K+ + L E LG S+ + +
Sbjct: 357 FGLHIIKVEEKKDGGLPPFKQVEAEVLAAMAQEQGADKLHDVVDNLIEDNILGRSLKDSA 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + G + + Q + D + +Y+
Sbjct: 417 EKYGLKWGET------GLLSAAELEKTLGVTAQGAATLVATPAGNPVDTALEAGK-AYVV 469
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++ +S PA LE V + K A L E + G
Sbjct: 470 ARVIKSEPASTASLEAVKERIVAGLVEEKALAAALESAAALRKELENAPLGAAGL---KG 526
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQV-FSGPVEM----VKCFPIENGLSYVVFKVTNSK 580
++ T + R F +++ F +G VV +V +
Sbjct: 527 RTVKTVKGMERNGALASFGPNPVMAEALFEARAGQWLPVAYAVEDGSGSGAVVVRVKGVQ 586
Query: 581 VGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVTV-HDNLIQR 625
E D + + +D L + + L S V V +++ I R
Sbjct: 587 PPDAAEWDMVKDIMANAVARDRADGLFEIFMQRLASGAKVEVYNEDFIDR 636
>gi|197248545|ref|YP_002145433.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197212248|gb|ACH49645.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
Length = 623
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 124/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSHDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +L++E K GK + K G S
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + S P + + + N + V+ K G P +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|56414392|ref|YP_151467.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197363312|ref|YP_002142949.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56128649|gb|AAV78155.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197094789|emb|CAR60322.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 623
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKSRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--LVSDADIQAYYDQHLDQFTQPERTRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +L++E K GK + K G S
Sbjct: 472 KPEAAKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + S P + + + N + V+ K G P +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|74317691|ref|YP_315431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
denitrificans ATCC 25259]
gi|74057186|gb|AAZ97626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
denitrificans ATCC 25259]
Length = 647
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 107/645 (16%), Positives = 224/645 (34%), Gaps = 39/645 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
LE IRK ++ W+AK+ L ++ V F ++G+ + V VG+ + +
Sbjct: 16 LEAIRKHAKGWLAKVILGLIAVTFALFGIDSYMSGDRSGGVVAEVGKVGITREELTREIQ 75
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + +G + + K++LD+L+ L E + A V I +
Sbjct: 76 AQSDRLRESLGPAFDPSMTETAAFRKQVLDSLIERKALLLEAEKLKFLAPDSYVAAAIGQ 135
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F +D KFS + + L + G + + + V + L+Q
Sbjct: 136 IPAFQ-QDGKFSPQRYEAILRQNGRTPASFENELRQAFMLEGVTSPVTLAAFNATTTLEQ 194
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
R + R + ++ L V + A + + + K + PE R Y++ D
Sbjct: 195 VARLVAQQREISWVDLPVASVADEVKVTPADVERHYAANKPAFTEPEQIRAEYVVLDAAA 254
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE---------------- 285
I +S ++ Y N ++ PE R+ ++ K++D
Sbjct: 255 LVAGISVSEQAVRDYYAANAAQFGQPEQRSASHILIAADKDSDAATRAKAKAKATALMET 314
Query: 286 -AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
Q + G+ +++ G + D SLGSF + + + K + +
Sbjct: 315 LRKQPERFGELARSTSQDPGSAEQDGSLGSFGRGMMVKP--FEDAVFAMKPKEIRGPVES 372
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FGY I + +I+P EV+ I +++R +A + + + +
Sbjct: 373 DFGYHIIRLDSIEPGKAAPLAEVRAAIVDELRKQQAQKTFADLADNFSNLVYENAESLQP 432
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + + + L + + G+ +
Sbjct: 433 AAA--AAKLTVQQSGWMNAKAAPPPFDNPALSAALFS--PESIKSRQNTEAIEIKPGTLV 488
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
++ E AR R L EV ++++ + +TA+ ++ KA + ++
Sbjct: 489 AARVVEHRAARLRPLSEVSAEIERTMRAEQTAQLLAKKAEATIKSLQDGKES-------- 540
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVG 582
G + R G+ VF E + SY + +VT
Sbjct: 541 GLDWTAFQVVGRQ--PGASLDAAGVKAVFRANAEKTPAYTGFARPDGSYRIVRVTRVVEP 598
Query: 583 PVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + S + Q + + ++IA + + + V + N I+
Sbjct: 599 ASLDPMLMESIGSGVMQAQQRADMKALIALVTAGHKVKIQPNAIE 643
>gi|54309794|ref|YP_130814.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
profundum SS9]
gi|46914232|emb|CAG21012.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
profundum SS9]
Length = 623
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 116/636 (18%), Positives = 241/636 (37%), Gaps = 34/636 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +R+ + K+ L ++ F+ G+ L + + ++ + F ++
Sbjct: 1 MMERLREGVNSIWVKVILGLIIFSFVFAGVGSYL-AGGSQPAAAKINGTEISQNDFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ + + +LD +++ ++Q ++GL +
Sbjct: 60 QNERNRMQSQLGDYFSTLLGDPEYVKQFRQSVLDRMINDVLIEQRATELGLRISDEHIRK 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F +D +F +D + L R G ++ ++ + RT + G +
Sbjct: 120 TITSMPEFQ-RDGQFDNDSYTMLLRRSGFTPDQFAEYMRTDMLRTQFLTAIQGSDFTLDS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L ++ + R V + L+ A ++ ++E+ + P+ +++YI
Sbjct: 179 ELTALRKLEAQQRVVRSLTLDLADFTKNATVTDEEAKAFYEQNPQMFTRPDQVKVAYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK----- 292
+ +++S+++++A YE++K+KY S E R V ++ +A K
Sbjct: 239 SGEGLKDTLDVSDEDVKAYYEEHKDKYSSIEQRQVSHILVQGDNADAKAKAEALKAELDA 298
Query: 293 GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F +LA ++ L F + + D + D+ F LA GD + V+ SFGY
Sbjct: 299 GADFAELALSSSDDTYSGKDGGKLDWFERGVM-DPAFEDAAFGLANNGDISGVVKSSFGY 357
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I + +K S F +V +I ++R +A+E + +L E + +
Sbjct: 358 HIIKLDAVKASQVKPFADVSAEIIVELREQQAAEHFYDMQTKLAETAFEMPDSLDDAAAV 417
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ + V A P Q LF ++D L+ D + + + V++
Sbjct: 418 ---VNATVHTTDFISQIDAQGVLANPAVMQALFSAEVREDGLNSD-VIEIAPEHVVVVRV 473
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+S +EV VK + K + +KA+ L+ D + G S
Sbjct: 474 DDSRDEMVLPFDEVSAKVKAQLASQKGEQNAQAKADDLIAGLRAGNT---DALEAEGLSF 530
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSG--PVEMVKCF-----PIENGLSYVVFKVTNSKV 581
I+R + FS PV + N + KV + V
Sbjct: 531 GEEQTISRSGPD-----RMVSQVAFSLTKPVGDKSVYGMTRDATGNVQIIALDKVIDVDV 585
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
F + QM + + + + L+ V+
Sbjct: 586 AKEAISSDFAKQVEQMNAQQDVAATLQALRDTAEVS 621
>gi|283851044|ref|ZP_06368329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp.
FW1012B]
gi|283573690|gb|EFC21665.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp.
FW1012B]
Length = 650
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 104/644 (16%), Positives = 232/644 (36%), Gaps = 32/644 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RK +++W KI ++ + F+ WG+ F ++ + ++ Q V + ++
Sbjct: 1 MLDPMRKYAQSWGIKIVFGLIILVFVFWGVGS--FQGDKATVLATIDGQPVLIKDYEKAY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ L + + V + + G ++ N+V+ L+ +G+ + EIA
Sbjct: 59 QENL-RLVKNKNPNVTDKDLQDGGFRWQVFSNMVTTRLLEDQAAKLGIAVSPEELRAEIA 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F + +F + + L + E+ + + L + ++
Sbjct: 118 KIPAFQNESKQFDAKRYENLLQANDVTPGEFEADFRQNLLLEKLAAYVSLPAAVTDTEAR 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
F E ++ YI P+ + ++E KD + P RI Y+ F
Sbjct: 178 SIFDFMREQATIHYIPFKTEDFTKGVAPTADQIKAYYEARKDQFATPAQIRIDYVEFTPK 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQ 288
K E+++ +++ Y+ N++KY PE V + +A +
Sbjct: 238 ALAKPAEVTDADIETAYKANQKKYAKPEQVRVRHFLVMLPADAPKEAVDAATAKLKDLAA 297
Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHG 344
LK G F L + + K +P + KK + +
Sbjct: 298 KLKAGADFASLLPKNPNNPEGLIGEDWAWLPKGSLPKEFGAFEEKAFSLKKDEIGEPVRT 357
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+ G + + + + EVK +I + + KA++K+ + ++E +A G + +
Sbjct: 358 ALGLHLIQAGEHQAAGEKTLAEVKDEIRSDLAEQKAADKLTKALDTIQEKVAAGEDLKKA 417
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ EK+ + K A + EQ L +F D ++ DG ++
Sbjct: 418 AAEEKLETKTTDFF------AKDTPPAELGLSEQALAALFTFKQGGGADQPLSTQDG-FL 470
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
++ E+ PA +E V +K + + ++A+ V + + + + +
Sbjct: 471 LARVAETKPAGFEPMEAVTDVIKDRLVAEEAQKRARAQAD-TVAKAMETEEGKAKVLADY 529
Query: 525 GASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ + R + F YV+ +
Sbjct: 530 KDKIQISQPFTRQGFIPALGMAPVLVQTAFEATGPGWFKAAYAVSDGYVLAGLEKRMPAE 589
Query: 584 ----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+EKD+++S L Q +L + + ++ V + ++ I
Sbjct: 590 TALWDKEKDRWMSTLAQSKQSELFKAYLQTVQQTAKVEILNDAI 633
>gi|238911417|ref|ZP_04655254.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Tennessee str.
CDC07-0191]
Length = 623
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 124/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQLVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSHDTLPEELNFKPVADAIFNGGLVGENGTPGLNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +L++E K GK + K G S
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + S P + + + N + V+ K G P +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|283479299|emb|CAY75215.1| putative protease maturation protein [Erwinia pyrifoliae DSM 12163]
Length = 623
Score = 254 bits (648), Expect = 3e-65, Method: Composition-based stats.
Identities = 111/632 (17%), Positives = 249/632 (39%), Gaps = 32/632 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R AS V K+ L ++ + F++ G+ L SG V Q++ + ++
Sbjct: 1 MMDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSG-DYAAKVNGQEIGRAQLERAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E Q +G + + ++ L L+ L Q+ ++IGL ++
Sbjct: 60 SSERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF + ++S + G +Y + K L+ ++G G
Sbjct: 120 AIFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTGTDFVLGN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D + R V + +N + A + + + ++++++ + +PE R+SYI
Sbjct: 179 ETDSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSYIKM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S ++Q+ Y+++++ Y P+ + + EA +L KG F
Sbjct: 239 DASAMLQ--PVSESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALNKGGSFA 296
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+LA+E+ + +G E PD + L +KG + VI S G+++A +
Sbjct: 297 KLAKEKSADPISARNGGDMGWLEPETTPDELKNAA---LKEKGQLSDVITSSVGFIVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ +P + EV +IA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDTQPEKVKALSEVHDEIARKLKQEKAVVAFYKLQQKVSDAASN--DNESLASAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D+ +D E+ ++ + + P S + + ++I+E
Sbjct: 412 KAVDTDWFDRDNLPAELKFKAVQDAIFNGALLGENGAPGSNSEVITVDGDRAFVLRIREH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L++V + K K ++ ++A++L+ E D K
Sbjct: 472 KPEAVKALKDVAAQITDTLKQQKGLQQAKAQADKLLAELKAGKG--DDALKAANLRFAAQ 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVG--PVQ 585
+ R + FS P+ + + V+ + + G P
Sbjct: 530 QTLMRTGQD------ALTQAAFSLPLPPQGKPSYGISEDAQGNVVLIALDKVQKGEMPEA 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+K + +TQ + ++++ L+ + +
Sbjct: 584 QKQALVQGITQNNAQLAFAAMLSNLRKEAKIK 615
>gi|198244647|ref|YP_002214406.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|197939163|gb|ACH76496.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
Length = 623
Score = 254 bits (647), Expect = 3e-65, Method: Composition-based stats.
Identities = 124/638 (19%), Positives = 268/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q + + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQGISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +L++E K GK + K G S
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + S P + + + N + V+ K G P +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|56460109|ref|YP_155390.1| periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
loihiensis L2TR]
gi|56179119|gb|AAV81841.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
loihiensis L2TR]
Length = 622
Score = 254 bits (647), Expect = 4e-65, Method: Composition-based stats.
Identities = 116/637 (18%), Positives = 250/637 (39%), Gaps = 40/637 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+++ AK LV++ + F + G+ + S V V +++P S + ++
Sbjct: 1 MLERIREGSQSYTAKAILVLIILTFALAGVGGYITS-DTEDAVAKVNGEEIPRSDYDRAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++ G + S+ L +L+ L+ L Q+ ED G+ +V
Sbjct: 60 ENERSRLQEQFGDMFSAITSDPDYMRNLRSGVLEQLIEQELLVQYAEDNGMRVSPEQVKA 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I F +F +DV++ L G + + + + ++R ++
Sbjct: 120 AIRDISQFRTAG-QFDNDVYLMALRNAGYSPEAFAKVMQQDMTRNQLLRGLSATAFVLEP 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
R ++RS ++V +N + + + ++++ +D +R E ++Y+
Sbjct: 179 EAIAFMRLQSQSRSGGFLVASNESFEEQVEIAEQDIENFYQQNQDMFRTQEKLSVAYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLKK 292
+ E ++EIS++E++ Y++ +++Y + E R V ++ + + +EA LK+
Sbjct: 239 SLAAVESEVEISDEEVRQYYDERQQQYSTEEERRVSHILIEFETDNAKKKAEEALAELKQ 298
Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F ++A+ LG + D S+F L GD + V+ SFGY
Sbjct: 299 GADFSEVAQTYSDDTFSAEQGGDLGWIEAG-MMDEDFDASVFELENVGDLSDVVETSFGY 357
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I +++++ F EVK ++ Q+ KA ++ E ++L E E +
Sbjct: 358 HIIKLTDLREGSVTPFNEVKDEVRQQLLTEKAEDRYFEKQQKLAEISFEQPDTLEPAAE- 416
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWV 466
++ + +L +F + + D + V
Sbjct: 417 -----EIGSTVRRSDLFTRDRAPTPLSDDVVLNNLFSEQLIKEKLNSDIIETSDDRSLVV 471
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ E P R ++L+EV + + + K + +AN+ + + + +I
Sbjct: 472 RVTEHQPVRVKELDEVREKIVSELRVEKAQQLALEQANEWMQAWKAGEEVSDEIV----- 526
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVFKVTNSKVG 582
++ + N + ++FS E V V +T G
Sbjct: 527 ------WVDSIQRNNGEHPRTIVRELFSMSPSASDESVFNTVALPNGDAAVVALTEVSPG 580
Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ D+ S + + +L + I LK+ +
Sbjct: 581 STDDSQLDELKSQMRNRQAQVMLQAFINNLKADADIK 617
Score = 66.0 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/313 (9%), Positives = 86/313 (27%), Gaps = 12/313 (3%)
Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
E + + + + + I + + ++ +
Sbjct: 211 EQDIENFYQQNQDMFRTQEKLSVAYVELSLAAVESEVEISDEEVRQYYDERQQQYSTEEE 270
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK-EVAAIPYK 436
+ S + E + A + + D + G
Sbjct: 271 RRVSHILIEFETDNAKKKAEEALAELKQGADFSEVAQTYSDDTFSAEQGGDLGWIEAGMM 330
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
++ + + + V Y +++ + EV +V++ T K
Sbjct: 331 DEDFDASVFELENVGDLSDVVETSFGYHIIKLTDLREGSVTPFNEVKDEVRQQLLTEKAE 390
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-- 554
+ K +L ++ + +G+++ ++ R ++ +FS
Sbjct: 391 DRYFEKQQKLAEISFEQPDTLEPAAEEIGSTVRRSDLFTRDRAPTPLSDDVVLNNLFSEQ 450
Query: 555 -GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL--------TQMMNKDLLDS 605
++ + +V +VT + V+E D+ + Q + + +
Sbjct: 451 LIKEKLNSDIIETSDDRSLVVRVTEHQPVRVKELDEVREKIVSELRVEKAQQLALEQANE 510
Query: 606 VIAYLKSQYSVTV 618
+ K+ V+
Sbjct: 511 WMQAWKAGEEVSD 523
>gi|91228613|ref|ZP_01262531.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 12G01]
gi|269965576|ref|ZP_06179690.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 40B]
gi|91187845|gb|EAS74159.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 12G01]
gi|269829801|gb|EEZ84036.1| peptidyl-prolyl cis-trans isomerse D [Vibrio alginolyticus 40B]
Length = 619
Score = 254 bits (647), Expect = 4e-65, Method: Composition-based stats.
Identities = 108/631 (17%), Positives = 250/631 (39%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + S ++ VG ++P F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGSN-NSAAKVGNTEIPRGEFEMAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ A K +LD +++ LDQ E +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRS 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F +++ + L R G + + ++ + L R ++
Sbjct: 120 MILDMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQNSEFILPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + R + I ++ + ++ + ++++ DN+ PE ++SYI
Sbjct: 179 EVQAEGKLFTQTRDIRTIQIDLAEFAKNIELTDEEIQEYYKANPDNFTRPEQVKVSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
++++ +S+ E++ Y+++ KY S E R V ++ EA L G
Sbjct: 239 SAEALKEQVNVSDAEVKKYYDEHLNKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + LG ++ + D + ++ F+L GD + ++ FGY I
Sbjct: 299 FATLAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDTSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K S F+EV +I +M +A ++ E LE D + + V
Sbjct: 358 KLEELKDSVAKPFEEVAAEIKQEMVDQQAIDQFYELQNELE--RVAFEYPDSLYDASQAV 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ DF + + + + + +L + + + + V+++++
Sbjct: 416 NQEVKTTDFISQVDAPEVLRSPAVMQAILS--PEVKEDGLNSEAIEVAPEHIIVVRVEDA 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
LEEV V + VK +E Q+V + N + +
Sbjct: 474 RDETVLPLEEVKDQVVAELSRVKGEQEAMELGTQVVAALKEGKTN---VLAENNLAFGEQ 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
++R + VF+ + + ++ ++ +
Sbjct: 531 ETVDRRSP--------LATTVFAMAKPVDGKPVYGQSKDLEGNIIIIELDAVNAELDSEL 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+D+ + + ++ L SV+A L++ +
Sbjct: 583 EDQVAMQMQRASSQQDLSSVLAVLRANTDIE 613
>gi|195936005|ref|ZP_03081387.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
O157:H7 str. EC4024]
Length = 608
Score = 254 bits (646), Expect = 4e-65, Method: Composition-based stats.
Identities = 115/624 (18%), Positives = 248/624 (39%), Gaps = 32/624 (5%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
++ V F++ G+S L + V Q++ F N++ E + Q++G +
Sbjct: 2 IFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAFNSERNRMQQQLGDQYS 60
Query: 77 S---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
L +++L+ L+ A LDQ+ ++ L +V I +P F D KF
Sbjct: 61 ELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQV-DGKFD 119
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + L + G+ +Y L+ ++ G D+ + R V
Sbjct: 120 NSRYNGILNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVR 179
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
++ + A + + ++E+ K+N+ PE R+SYI + +S+ +L
Sbjct: 180 EATIDVNALAAKQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKL--DAATMQQPVSDADL 237
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSD 309
Q+ Y+++++++ P+ + + EA L KG F LA+E+ +
Sbjct: 238 QSYYDQHQDQFTQPQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNG 297
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
+G IPD L +KG + VI S G++I + +I+P+ S EV+
Sbjct: 298 GDMGWLEDATIPDEL---KNAGLKEKGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRD 354
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
D+A +++ KA + +++ + + T + ++ E+ + + K+ +E
Sbjct: 355 DVAAKVKHEKALDAYYALQQKVSDAASNDT--ESLAGAEQAAGVKATQTGWFSKENLPEE 412
Query: 430 VAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
+ P + + V P + + ++I E P + L +V VK
Sbjct: 413 LNFKPVADAIFNGGLVGENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVK 472
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ K ++ A +L+++ K GK + + G ++R +
Sbjct: 473 ALVQHNKAEQQAKVDAEKLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRSGRD------P 524
Query: 548 GISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKD 601
F+ P+ + + V+ + K G P +K + +TQ +
Sbjct: 525 ISQAAFALPLPAKDKPSYGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQI 584
Query: 602 LLDSVIAYLKSQYSVTVHDNLIQR 625
+ +++++ L+ + + + D L Q+
Sbjct: 585 VFEALMSNLRKEAKIKIGDALEQQ 608
>gi|205351763|ref|YP_002225564.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205271544|emb|CAR36362.1| peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326626798|gb|EGE33141.1| Peptidyl-prolyl cis-trans isomerase D [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 623
Score = 254 bits (646), Expect = 5e-65, Method: Composition-based stats.
Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNLLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +L++E K GK + K G S
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + S P + + + N + V+ K G P +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|22124938|ref|NP_668361.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
KIM 10]
gi|45440627|ref|NP_992166.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
Microtus str. 91001]
gi|108808639|ref|YP_652555.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
Antiqua]
gi|108811102|ref|YP_646869.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
Nepal516]
gi|145600047|ref|YP_001164123.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
Pestoides F]
gi|149365001|ref|ZP_01887036.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CA88-4125]
gi|162420506|ref|YP_001607415.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Angola]
gi|165926634|ref|ZP_02222466.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936039|ref|ZP_02224609.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010989|ref|ZP_02231887.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212996|ref|ZP_02239031.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399316|ref|ZP_02304840.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421506|ref|ZP_02313259.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423714|ref|ZP_02315467.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468476|ref|ZP_02333180.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis FV-1]
gi|218930183|ref|YP_002348058.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia pestis
CO92]
gi|229838757|ref|ZP_04458916.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229896089|ref|ZP_04511259.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides A]
gi|229899325|ref|ZP_04514468.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
Orientalis str. India 195]
gi|229901331|ref|ZP_04516453.1| Peptidyl-prolyl cis-trans isomerase ppiD [Yersinia pestis Nepal516]
gi|270489517|ref|ZP_06206591.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
gi|294504885|ref|YP_003568947.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Z176003]
gi|21957777|gb|AAM84612.1|AE013706_7 putative protease maturation protein [Yersinia pestis KIM 10]
gi|45435484|gb|AAS61043.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
Microtus str. 91001]
gi|108774750|gb|ABG17269.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Nepal516]
gi|108780552|gb|ABG14610.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Antiqua]
gi|115348794|emb|CAL21748.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CO92]
gi|145211743|gb|ABP41150.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides F]
gi|149291414|gb|EDM41488.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis CA88-4125]
gi|162353321|gb|ABX87269.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis Angola]
gi|165916184|gb|EDR34791.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
Orientalis str. IP275]
gi|165921562|gb|EDR38759.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989989|gb|EDR42290.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166205783|gb|EDR50263.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960425|gb|EDR56446.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051820|gb|EDR63228.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167057884|gb|EDR67630.1| peptidyl-prolyl cis-trans isomerase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681260|gb|EEO77354.1| Peptidyl-prolyl cis-trans isomerase ppiD [Yersinia pestis Nepal516]
gi|229687727|gb|EEO79800.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
Orientalis str. India 195]
gi|229695123|gb|EEO85170.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701012|gb|EEO89041.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Pestoides A]
gi|262362950|gb|ACY59671.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis D106004]
gi|262366870|gb|ACY63427.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis D182038]
gi|270338021|gb|EFA48798.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
gi|294355344|gb|ADE65685.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis Z176003]
gi|320016339|gb|ADV99910.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 628
Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats.
Identities = 115/640 (17%), Positives = 259/640 (40%), Gaps = 29/640 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ L S V Q + + +
Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DYAAKVNDQDISRAQLEQAM 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E G + QK+G + + L +++L L++ LDQ+ +GL +V
Sbjct: 60 QSERGRLQQKLGEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVKE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + P F ++ F ++ +++ + + G +++ + L ++ F +
Sbjct: 120 SIRQIPDFQTGEH-FDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLPI 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R V L+ + + A ++ L ++++ K N+ APE ++S+I
Sbjct: 179 EVQAMSALVLQQRDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSFIAM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + I ++ +++ A Y++N+ Y PE R + F + EA A LKKG F
Sbjct: 239 DAAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQFKTEVEAKAALDELKKGADFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+A+E+ + LG E PD +L++KG + VI S GY+I +
Sbjct: 299 VIAKEKSTDIISRNNGGELGWLEPETTPDEV---KAANLSEKGQLSDVIKSSVGYLIVRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
++IKP EV ++A +++ KA + +++ + + + ++ E++
Sbjct: 356 NDIKPELVKPLSEVHDELAKKLKQEKALDAYYALQQKVNDA--ATSDNESLASAEEVAGT 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D E+ P + + V S + + ++I
Sbjct: 414 KAQQTGWFTRDTVPAEINFKPVVQAIFDGRLVGENGSAGSNSEVITVDGDRAFVIRIDGH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P ++V + + K K ++ +++ + + K+ G S
Sbjct: 474 KPEGIEPFDQVRDQISELVKRQKAEQQARVDGEKILTALKQGKG--EEAMKSAGISFGEK 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++ +++ + +F+ V + + V+ ++ + G +QE
Sbjct: 532 KTLSYASVDDQ-----LMQTIFALAHPQKDQPVYGLSQDRQGNIVLIELLSVTPGKLQES 586
Query: 588 DK--FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ FI + + + D+++A L Q ++ + Q+
Sbjct: 587 ETKIFIEKMQEESVSMIFDALMANLHKQATIKIGPAEQQQ 626
>gi|322614730|gb|EFY11659.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322618836|gb|EFY15724.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322623543|gb|EFY20382.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322629158|gb|EFY25937.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322631879|gb|EFY28633.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322637384|gb|EFY34086.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322642069|gb|EFY38679.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322647888|gb|EFY44363.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322653272|gb|EFY49605.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322660579|gb|EFY56815.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322664731|gb|EFY60924.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322669216|gb|EFY65366.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322670761|gb|EFY66894.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322679000|gb|EFY75055.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322682029|gb|EFY78054.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322685142|gb|EFY81139.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|323192964|gb|EFZ78187.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323196954|gb|EFZ82096.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323203939|gb|EFZ88956.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323206976|gb|EFZ91929.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323214179|gb|EFZ98937.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str. 556152]
gi|323214497|gb|EFZ99248.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323219161|gb|EGA03658.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323227003|gb|EGA11184.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323230179|gb|EGA14299.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323233917|gb|EGA18006.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323238389|gb|EGA22447.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323244076|gb|EGA28085.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323246237|gb|EGA30220.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323251863|gb|EGA35726.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323257859|gb|EGA41538.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323261127|gb|EGA44719.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323264943|gb|EGA48442.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323272506|gb|EGA55913.1| periplasmic folding chaperone [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
Length = 623
Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats.
Identities = 124/638 (19%), Positives = 269/638 (42%), Gaps = 28/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKARFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+P+ EV+ DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASN--DNESLAGAEQVAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + V P + + V++ E
Sbjct: 412 KAVETGWFSRDTLPEEMNFKPVADAIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV V K K ++ A +L++E K GK + K G S
Sbjct: 472 KPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEP 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEK 587
++R + + S P + + + N + V+ K G P +K
Sbjct: 530 KTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEVQK 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + + +++++ L+ + + + D L Q+
Sbjct: 586 KAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 623
>gi|86148518|ref|ZP_01066806.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. MED222]
gi|85833709|gb|EAQ51879.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. MED222]
Length = 621
Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats.
Identities = 110/631 (17%), Positives = 236/631 (37%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYITGGGN-NAAAKVGNTEIARGEFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ K +LD +++ L+Q E +GL ++
Sbjct: 60 QNERNRMQSQLGDYFAQMLADPTYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F +F +V+ S L R G + + + ++ + L R +V G
Sbjct: 120 MILEMPQFQTAG-QFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + + R + + L+ + + ++ + ++++ Y PE ++SYI
Sbjct: 179 EIDIQSKLIAQTRDIRTVTLSVADLAKNIELTDEQIELYYQENPAAYTRPEQAKVSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++E+S++E Q Y+++ +KY + E R V ++ EA L G
Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298
Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LAEE+ LG ++ + D + D+ F+L GD T ++ FGY I
Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERDVM-DPAFEDAAFALVNIGDTTGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K S + EV +I ++ A ++ E LE+ + S +
Sbjct: 358 KLDELKASQAQPYTEVAAEIKTELLDQHAVDQFYEQQTELEKVAFEFPDSLDDSAE--AI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + DF + + + + +L + + + + V+++E+
Sbjct: 416 NAKITTTDFISQADAPEVLMTPAVMQAILS--PEVKEDGLNSEVIEVAPEHVIVVRVEET 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L EV V VK ++ LV E + + +
Sbjct: 474 RDETVLPLAEVKDQVVAALSAVKAEQQAVELGVSLVNELKQGN---EAVLADNSLEFTEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI----ENGLSYVVFKVTNSKVG-PVQE 586
I+R + VF+ + + VV +++
Sbjct: 531 ETIDRNSP--------LAASVFALVKPEAGQAVFGQSKDQDGNIVVVELSKVTAEINPAY 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L ++ N+ L +V+ L+ V
Sbjct: 583 STQLGAQLERVGNQQDLTNVLNVLRKNADVE 613
>gi|192360723|ref|YP_001982468.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
japonicus Ueda107]
gi|190686888|gb|ACE84566.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
japonicus Ueda107]
Length = 621
Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats.
Identities = 107/630 (16%), Positives = 218/630 (34%), Gaps = 23/630 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ ++ I + L V F ++G+ ++ VV V +K+ N+
Sbjct: 1 MLQSIRDNSKGVISYILIGFLVVIFALFGVESLFNWNPTANKVVEVNGEKITQVELQNAI 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + G V SE L K +LDNL+ L Q + G+ + + +I+
Sbjct: 61 ARQKQQMMNRYGDQVPSEFLSEDYLRKPVLDNLIQNQVLYQAAKKAGMTVGNDLITEQIS 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P+F + F + + L+ G Y K L + + ++
Sbjct: 121 SAPVFKNEAGVFDNTRYRQALSMMGYTHATYTQQLAKDLVLNQLYTGLASSSFTTPNEIE 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q ++ R Y VL + + S+ + ++ K Y + E + YI V
Sbjct: 181 QLIALSYQTRDFSYFVLPSSKIKESVVVSDEEIADYYAKNPQAYTSEEQVAVDYIELSVD 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--EADEAFQSLKKGKKFIQ 298
I IS ++L +YE+ + + R ++ NQ + + L G+ F +
Sbjct: 241 ALMADISISEEQLHKQYEQGLASFVAAPERHAAHILVENQDAEKIKAVREKLAAGEDFAE 300
Query: 299 LAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
LA+ L G F+K ++ K G+ + + G +
Sbjct: 301 LAKTYSDDLGSKEQGGDLGFTKGDTFPAEFETALA-GLKVGEVSAPVETDAGTHFIKLLA 359
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ S SF+E K + ++ +A ++L+E S+ E+++ +
Sbjct: 360 ERGSQAPSFEEQKASLEEHLKRAEAENIFVAKLEQLKELAFNADSLAEVAKEIDAKVSNT 419
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
L + + L + ++ + P+R
Sbjct: 420 GLFSRTSGQGIAANKLV-----ADAAFSEDVLQDGNSSEPIELDTTRAVVIKKTDYQPSR 474
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
L+EV + K E + +K +QL+ + GK ++ G +L T
Sbjct: 475 LLPLDEVKQQIVGVLTESKARELMRTKGSQLLADLH-AGKALDELASAEGQALKTAAAAK 533
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG----PVQEK 587
R ++ + F + + Y + ++ +G ++K
Sbjct: 534 RYGSD---VEPEIAGFAFDMAKPTAEVASVAGFVTASGDYALIQLAAVNLGAEEIAEEQK 590
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + M S YLK +
Sbjct: 591 KAIVAQVGNMNGLADFSSFQGYLKEVADID 620
>gi|51595313|ref|YP_069504.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia
pseudotuberculosis IP 32953]
gi|153948580|ref|YP_001402048.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Yersinia
pseudotuberculosis IP 31758]
gi|170025447|ref|YP_001721952.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pseudotuberculosis
YPIII]
gi|186894330|ref|YP_001871442.1| peptidyl-prolyl cis-trans isomerase D [Yersinia pseudotuberculosis
PB1/+]
gi|51588595|emb|CAH20203.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
outer membrane proteins [Yersinia pseudotuberculosis IP
32953]
gi|152960075|gb|ABS47536.1| peptidyl-prolyl cis-trans isomerase [Yersinia pseudotuberculosis IP
31758]
gi|169751981|gb|ACA69499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
pseudotuberculosis YPIII]
gi|186697356|gb|ACC87985.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Yersinia
pseudotuberculosis PB1/+]
Length = 628
Score = 253 bits (645), Expect = 6e-65, Method: Composition-based stats.
Identities = 115/640 (17%), Positives = 259/640 (40%), Gaps = 29/640 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ L S V Q + + +
Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DYAAKVNDQDISRAQLEQAM 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E G + QK+G + + L +++L L++ LDQ+ +GL +V
Sbjct: 60 QSERGRLQQKLGEQFSVLAANEGYMQQLRQQVLGQLINNVLLDQYARKLGLTVSDEQVKE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + P F ++ F ++ +++ + + G +++ + L ++ F +
Sbjct: 120 SIRQIPDFQTGEH-FDNNRYLALINQLGYTPEQFAQLQRQQLINQQLLKAFSDTGFVLPI 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R V L+ + + A ++ L ++++ K N+ APE ++S+I
Sbjct: 179 EVQAMSALVLQQRDVRLATLDLKALQAEQKVTDEELQAYYDQNKHNFIAPEQMKVSFIAM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + I ++ +++ A Y++N+ Y PE R + F + EA A LKKG F
Sbjct: 239 DAAAMQSNITVTEEDIAAYYDQNRSSYTQPERRNYSVIQFKTEAEAKAALDELKKGADFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+A+E+ + LG E PD +L++KG + VI S GY+I +
Sbjct: 299 VIAKEKSTDIISRNNGGELGWLEPETTPDEV---KAANLSEKGQLSDVIKSSVGYLIVRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
++IKP EV ++A +++ KA + +++ + + + ++ E++
Sbjct: 356 NDIKPELVKPLSEVHDELAKKLKQEKALDAYYALQQKVNDA--ATSDNESLASAEEVAGT 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D E+ P + + V S + + ++I
Sbjct: 414 KAQQTGWFTRDTVPAEINFKPVVQAIFDGRLVGENGSAGSNSEVITVDGDRAFVIRIDGH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P ++V + + K K ++ +++ + + K+ G S
Sbjct: 474 KPEGIEPFDQVRDQISELVKRQKAEQQARVDGEKILTALKQGKG--EEAMKSAGISFGEK 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++ +++ + +F+ V + + V+ ++ + G +QE
Sbjct: 532 KTLSYASVDDQ-----LMQTIFALAHPQKDQPVYGLSQDRQGNIVLIELLSVTPGKLQES 586
Query: 588 DK--FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ FI + + + D+++A L Q ++ + Q+
Sbjct: 587 ETKIFIEKMQEESVSMIFDALMANLHKQATIKIGPAEQQQ 626
>gi|332992311|gb|AEF02366.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
sp. SN2]
Length = 630
Score = 253 bits (644), Expect = 8e-65, Method: Composition-based stats.
Identities = 109/641 (17%), Positives = 247/641 (38%), Gaps = 30/641 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ A + ++ + F+ G+ L S SG++ V +V +++ +
Sbjct: 1 MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-SGTTAVATVNGEEISAQELERGY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + + G + S + +LD L++ + Q +++GL ++
Sbjct: 60 QNQRAQMESQFGESIAQLFSSEQYLSDFRRNVLDRLIAEKLIQQQAQEMGLRVSDAQIRE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + P F +F +D F + L + G ++ D+ +++ +
Sbjct: 120 TIVQMPEFQ-FGGQFDNDRFQTILRQNGFQVADFRDYLRIQMTQNQLAAALTNSEFALPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++A + R Y+++++ + + + +++ + E +++Y+
Sbjct: 179 EAERANALQLQTRDAKYVMIDSASFAESVEVTEDDIAEYYNANITAFDTEEQIKLAYVSL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-------ADEAFQSL 290
V + + ++ + ++ ++ Y+ N Y E R V ++ + + L
Sbjct: 239 TVEDVKSRVSVDDEAVRTYYDNNLSGYGKEEERRVSHILIESGDDADAAKAKTQALLDQL 298
Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G F +LAE G F + D + +++FSLA GD+T V+ FG
Sbjct: 299 NDGADFAELAENNSDDTFSAENGGDLDFITPGMMDDAFDEAVFSLANVGDYTDVVETEFG 358
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISR 406
+ I ++ +K + +F++V+ +I + KA E+ E + E + ++++++
Sbjct: 359 FHIIKLTELKEAQVQAFEDVEAEIRETLLTDKALEEFFELQNTMAEIAFEVPDTLEDVAN 418
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + L V A + D + L D + + V
Sbjct: 419 AVDLPVQETGLFSRNTVPVNMSSPAL-----TEVAFSSELIDEGVNSDIIELDDETVVVV 473
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ E +P R + L+EV + K K E S A +V + G++
Sbjct: 474 RVVEHLPQRTQALDEVRDGIVSTVKAQKAQEAAESWATSVVESLQQ-GESVDATLAEKSL 532
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVE-----MVKCFPIENGLSYVVFKVTNSKV 581
+ + + R + + ++F+ E V + + KV ++
Sbjct: 533 NWESAEAVARSGST---LNRSIVDKLFTLSTEAEKRVDVIATVSGDVAIVELVKVNSAPA 589
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+ + L QM + + I L++ VTV +NL
Sbjct: 590 LSAEMSESLKPRLAQMQGQRVYQQFIEALRADADVTVSENL 630
>gi|109899437|ref|YP_662692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
atlantica T6c]
gi|109701718|gb|ABG41638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
atlantica T6c]
Length = 627
Score = 253 bits (644), Expect = 9e-65, Method: Composition-based stats.
Identities = 106/638 (16%), Positives = 236/638 (36%), Gaps = 32/638 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ ++ A L ++ + F+ G+ + S S + V + + ++
Sbjct: 1 MLERIREGTQGTWAMAILGLVILSFVFAGVGSYINS-SAETAAAKVNDDTISQADLERAY 59
Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E G + + G ++ A + +LD L+ L+Q D+GL ++
Sbjct: 60 QNERGRMESQYGEAFAALTADSAYLQQFRQGVLDRLIGDKLLEQAAIDMGLRVSDAQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF ++ + + L + G E+ D+ ++R + +G
Sbjct: 120 AIVAMPEFQ-FDGKFDNERYTAVLRQAGFQPNEFRDYMRVDMTRRQLSNALLGSEFTLAA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
QA + + R Y+ + + S+ + +++ + + ++Y+
Sbjct: 179 ETTQAYKLQQQTRDARYLTIPAESFKDGINVSDDDVENYYQANITQFDTEQKVSLAYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-------EAFQSL 290
V + I +S+DE YE+N + + + E R ++ + + +
Sbjct: 239 SVDDLLTDIVVSDDEALQYYEQNIQDFRTQEERRASHILIEFGDDEQGARQQAEDVLSKI 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G F +LA+E + L FS + D + ++ ++LA GD + V+ F
Sbjct: 299 NDGGDFAELAKEYSSDTFSAENGGDLDWFSAG-MMDPAFEEATYALANVGDVSSVVESEF 357
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEIS 405
GY I +++IKP T F +VK+D+ +++ +A E+ R+ E ++DE++
Sbjct: 358 GYHIIKLTDIKPEETSPFTDVKEDVIAKLKSERAEEEFYAKQLRMAEVAFETPDTLDEVA 417
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
++ + + + + L D M+
Sbjct: 418 AIAEVDVNTTVMFSQDSVPAAVNYPNVVAQ-----AFSDELINDQVNSDVIELGDNHVMF 472
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++ R + LEEV ++ + + A L+++ K ++ + +
Sbjct: 473 VRVANYEAQRTKALEEVSPEINDILLAEQAQQAAKEWAETLLVDI-KAEQDVSESLQAKA 531
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-----ENGLSYVVFKVTNSK 580
+ R ++ ++ +F + + + + KV +
Sbjct: 532 VEWQEQEAVARSGSQ---ISPALVTALFKLTEDKESNAQVVELFNGDVGLVQLMKVNDGA 588
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + L+ M + + L+ Q V +
Sbjct: 589 ELPSTDVAALQNRLSTMRAQFTYGEFVNALREQADVEI 626
>gi|312882503|ref|ZP_07742244.1| peptidyl-prolyl cis-trans isomerase D [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369903|gb|EFP97414.1| peptidyl-prolyl cis-trans isomerase D [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 619
Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats.
Identities = 113/631 (17%), Positives = 240/631 (38%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +R+ + K+ L V+ + F+ G+S + SS+ VG ++ F +
Sbjct: 1 MMERMREGASGVAVKVILGVIILSFVFTGVSGYI-GSGASSSAAKVGNDEISRGDFEREY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + ++G ++ ++ K +LD ++ +++ E +GL +V
Sbjct: 60 QNQRNQMQAQLGDYFSNLLADQNYVNTFRKSVLDRMIDDKLIERHAESLGLRVSDAQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+I P F + KF DV+ + L R G + + K + R + G
Sbjct: 120 QIFEFPQFQVEG-KFDEDVYQATLRRAGFTAHTFSEDLRKNILREQLRNAIEGTDFSLAG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R V I L+ S+ + +++++ Y PE +++YI
Sbjct: 179 EVESQSKLISQTRDVKKITLSLSDFAKKVKLSDEEINDYYQQHTSQYTRPEQMKVAYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ + I +S+++ +A Y+ N +KY S E R V ++ + L G
Sbjct: 239 SAEKLKNNIVVSDNDAKAYYQDNIDKYTSEEQRRVSHILIQGDNKEKAQKVLDKLNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E + SLG ++ + D + F+L + G+ T ++ FGY I
Sbjct: 299 FATLAKEDSEDVGSAEEGGSLGWIERDVM-DPEFEKAAFALKQPGETTGLVKSEFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K T S++ V+K I +++ KA+++ +LE + + +
Sbjct: 358 KLDELKAPETESYETVEKAIKQELKDQKAADEFYALQAQLETQAYESPDSLDAAAE--AI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
++ DF + + P + + + + + V+I ++
Sbjct: 416 KANIQTTDFISDANAPDLLKSAPVLQ--ALANPEVKEDGLNSEVIEIAPEHVLVVRINDT 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L EV DV + VK E A +V E D+ K G
Sbjct: 474 RPEKLLPLSEVRDDVVEAATEVKAKESAEKLAISIVEELKSGK---EDLLKKYGLQFGEA 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVGPVQEK 587
++R VF+ +++ +T P ++
Sbjct: 531 ESLDRSSPIANV--------VFAMTKPTDGKIEYTQLRDLNGDFLIVGLTQVVSKPNKQY 582
Query: 588 -DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + LT+ + +I L+++ +
Sbjct: 583 EEQIKAQLTRTNAQQDFTGLIKILRNETDIQ 613
>gi|262394811|ref|YP_003286665.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. Ex25]
gi|262338405|gb|ACY52200.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. Ex25]
Length = 619
Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats.
Identities = 107/631 (16%), Positives = 249/631 (39%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + S + ++ VG ++P F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVSGNN-NSAAKVGNTEIPRGEFEMAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ A K +LD +++ LDQ E +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRS 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F +++ + L R G + + ++ + L R ++
Sbjct: 120 MILDMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQNSEFILPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + R + I ++ + ++ + Q+++ DN+ PE +++YI
Sbjct: 179 EVQAEGKLFTQTRDIRTIKIDLAEFAKNIELTDEEIQQYYKANPDNFTRPEQVKVAYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
++++ +S+ E++ Y+++ KY S E R V ++ EA L G
Sbjct: 239 SAEALKEQVNVSDAEVKKYYDEHLNKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + LG ++ + D + ++ F+L GD + ++ FGY I
Sbjct: 299 FATLAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDTSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K S F+EV +I +M +A ++ E LE D + + V
Sbjct: 358 KLEELKDSVAKPFEEVAAEIKQEMVDQQAVDQFYELQSELE--RVAFEYPDSLYDASQAV 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ DF + + + + +L + + + + V+++++
Sbjct: 416 NQEVKTTDFISQVDAPEVLRNPAVMQAILS--PEVKEDGLNSEAIEVAPEHIIVVRVEDA 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
LEEV V + VK ++ Q+V + D+ +
Sbjct: 474 RDETVLPLEEVKDQVIAELSRVKGEQDAMELGTQVVAALKEGKT---DVLTENNLAFGEQ 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
++R + VF+ + + V+ ++
Sbjct: 531 ETVDRRSP--------LATTVFAMAKPVDGKPVYGQSKDLEGNIVIIELDAVNAELDSDL 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+++ + + ++ L SV+A L++ +
Sbjct: 583 EEQVAMQMQRASSQQDLSSVLAVLRANTDIE 613
>gi|88860449|ref|ZP_01135087.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
[Pseudoalteromonas tunicata D2]
gi|88817647|gb|EAR27464.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
[Pseudoalteromonas tunicata D2]
Length = 633
Score = 252 bits (642), Expect = 1e-64, Method: Composition-based stats.
Identities = 111/629 (17%), Positives = 227/629 (36%), Gaps = 25/629 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ AKI L ++ + F + G+ L + V V QK+ ++F ++
Sbjct: 1 MLEKIREGSQGLTAKIILGLVILSFALAGIGSYL-GQTTEKPVAVVNGQKISQTTFARAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q+ G + S+ + + ++D LV Q ++GL +
Sbjct: 60 ENERSRLEQQFGEYFNQIASDPTYMARVREGVIDRLVQQELQTQLANELGLRISDEAIKE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI P F +FS+D ++ + + + ++ ++R+ +V
Sbjct: 120 EIRTLPYF-NIGGQFSNDRYLQVIRQMNFQPDTFRNYLRTEMTRSQLVTAVAASDFALPN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R +DY++L V + ++ ++ + + + E + Y+
Sbjct: 179 EMVTISQLQTQVRDLDYVLLTADQVSKDITVTEQEISDYYTLNQSQFLSQEQVSVEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------DEAFQSL 290
+ +++DE+ A Y NK +Y PE R V ++ + + L
Sbjct: 239 NAETLPVVKAVTDDEILALYNDNKAQYVEPERRRVAHILVDLGDDEAASEAKAQDLLAKL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
K G F QLA+ + L + + D + ++ FSLA KGD + V+ F
Sbjct: 299 KAGADFAQLAQSDSSDIVSAENGGDLDWIDR-DMMDPAFEEAAFSLAAKGDISDVVKSEF 357
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEIS 405
G+ I +++++ + VK ++ ++ +E E RL E S+ E +
Sbjct: 358 GFHIIKLTDLQAEQIKTLDMVKDELTARLEQDHKTEHFYELQTRLAELAFEVADSLSEAA 417
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ L + + + + L + +
Sbjct: 418 TAVEQEVKSTALFSRFDAPAPLNDAKVL-----DAAFSVELLEDKVNSELIELGNEHVVV 472
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++KE PA + L EV +K K E +++ ++L + S G + D+
Sbjct: 473 LRVKEHKPAATKALAEVSDQIKAVLVKQKANEVNATRGDELYAKLS-SGTSLADLAAEQS 531
Query: 526 ASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
+ I R N D +V + NG +V +
Sbjct: 532 LQVEQARDIKRNAYNLVPGLAKDVFQMAHPVDKPVVNRITLANGDVALVSLLAVKNAPVT 591
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ + + + LK Q
Sbjct: 592 ELDARTKESINAEQINRNYLVFVDALKQQ 620
>gi|224368972|ref|YP_002603136.1| PpiD1 [Desulfobacterium autotrophicum HRM2]
gi|223691689|gb|ACN14972.1| PpiD1 [Desulfobacterium autotrophicum HRM2]
Length = 630
Score = 252 bits (641), Expect = 2e-64, Method: Composition-based stats.
Identities = 100/645 (15%), Positives = 225/645 (34%), Gaps = 36/645 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+++R+ + +W+ KI L ++ + F+ G+ + V + Q + + + S+
Sbjct: 1 MLKLMRENTGSWIIKILLGLIVLVFVFLGMGSI--GAKRGNEVAMINDQPITLNEYQRSY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + Q+ G +N E + + + K+ LD L+ + + + +E + + +
Sbjct: 59 QNIIEQMRQRFGDNLNDEILQMLQVKKQALDRLIDERLISGEADRLKVEVSNQELANSLL 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F K+ F + L+R ++ + + + L V + + S+
Sbjct: 119 DIPAFR-KNGVFDLATYKVVLSRNRMSPESFEAMQLQALREQKVRDLVFSTLSVSDQEAR 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+DY+V N LT ++E K+ Y++ + Y+ F V
Sbjct: 178 AWYTHSKTQVGIDYLVFNPVA-YKDIAVDAKALTDFYESNKEKYKSEAELTVKYLEFAVK 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ + ++ IS+DE++A Y++N ++Y PE ++ ++ADEA + + A
Sbjct: 237 DYQDRVTISDDEIKAYYDENLDQYKVPEKVEARHILIRVPQDADEATVEAARNEAETIHA 296
Query: 301 E---------------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
+ + LG+F+++ + + G+ + +
Sbjct: 297 KAVGGEDFSLLAKTFSQGPTKDDGGYLGTFARDAMVKPFAEAA--FSLASGEISKPVRTQ 354
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + V P+ T + +V +I + + D + + + G +++
Sbjct: 355 FGWHVIKVEAKLPASTTALDKVAAEIRKTLSTAELKNLAYSDAGKAFDGIIDGDDLEQAG 414
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ G + Q R + D Y+
Sbjct: 415 LITGKKVLTAGPFTQKG-------PGDVVADSQGFARAAFAMSLNEIGDVKEIGDNYYII 467
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++ P LE V V KD E A + E K+ K + + K G
Sbjct: 468 KPVEKIDPE-VLPLEAVRDTVTKDLTAQLQQERAKKDAQAFLDEL-KDNKEIKAVAKAKG 525
Query: 526 ASLLTTNQINRMDNENKFFGY-DGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGP 583
++ R +F + + F P V + + V K+
Sbjct: 526 LEAKASSLFVRGATVPEFGPNSEITAVAFELSPENPVHPAVVTGSGGFYVISFREQKLPD 585
Query: 584 VQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
E D+ + + + + + LK + + +
Sbjct: 586 AAEIDENLDGVKVSMARSKQGSVYNEWLGELKMAAKIDIKKGFLD 630
>gi|16126137|ref|NP_420701.1| rotamase family protein [Caulobacter crescentus CB15]
gi|221234908|ref|YP_002517344.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
gi|13423343|gb|AAK23869.1| rotamase family protein [Caulobacter crescentus CB15]
gi|220964080|gb|ACL95436.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
Length = 654
Score = 252 bits (641), Expect = 2e-64, Method: Composition-based stats.
Identities = 125/643 (19%), Positives = 250/643 (38%), Gaps = 23/643 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML RK +++ A + +L V F I+G+SD +F S V+S G + + F +
Sbjct: 1 MLAGFRKFAKSPFAVVLFGLLIVSFAIFGISD-VFKGPQGSGVISAGSRSMSAIDFKQRF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ Q+ G + ++A G+D++I+ LV +L + +G+ V +
Sbjct: 60 DNYRKAMEQQNGTTLTPDQAVEQGVDRQIVQELVLQESLAAALHKMGVAPSDKLVADTVH 119
Query: 121 RSPL--------FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
F KF + + + + G+ + Y +++T G+
Sbjct: 120 EQMSQLPPTTRPFDPITGKFDSRAYATLMQQNGLTPETYEASLRDEIAQTHFFSAIADGL 179
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
+ + + E R V V+N V P++A LT + ++ D PE + +
Sbjct: 180 KAPRIYAALQGAYLLEAREVSAFVVNPSTVQRPNPPTDAQLTAFMKENADRLTRPETRVL 239
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
S + E + I+ ++Q ++ K+ PE RT+ Q+ P+ K A Q L K
Sbjct: 240 SIMRVSATALEPSVTINPADVQKAFDFRKDSLARPETRTIVQIAAPDAKAAAVISQRLGK 299
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
G+ +A+ GK+ + L K +PD +AD+ + G + I G G +
Sbjct: 300 GEDPAAVAKAYGKTP--LVLTDKPKSAVPDRKVADAA-FALQTGQVSGPIIGDLGVAVVK 356
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V+ I P + V+ I ++R A K E + ++ G + + + +
Sbjct: 357 VTKITPGAVATLDSVRPQIEAEVRSQTAQAKAYEQTQTYQDARDAGADLISAASKAGALV 416
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
I V G D G+ A + + + + V G Y V+++ +
Sbjct: 417 ITTAPVTAQGTDQMGQPFAGL---TPDIIKTAFDLSQGGESELVEAGKGEYYAVKVERIV 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-T 531
PA L EV + W + A+ + +KA++L K+G++ + +++
Sbjct: 474 PAALPPLAEVKPQLTAVWFGQEMAKRMKAKADELAAR-VKKGESLEAVATAAQSNVQKIP 532
Query: 532 NQINRMDNEN-KFFGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNSKVGPVQEKDK 589
+ R + + G + + F+ V + G +YVV K+ + P +
Sbjct: 533 GGLTRQNAQQHVALGQEFLGAAFTAKPGAVFTARAGQQGQAYVVAKLDAVRAAPTANVAQ 592
Query: 590 FI----SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ +DL ++ ++Q + L ++ +
Sbjct: 593 IAVLAQGQAANGLMRDLAEATRVVARTQMKAKSNLTLARQAIG 635
>gi|88810611|ref|ZP_01125868.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
Nb-231]
gi|88792241|gb|EAR23351.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
Nb-231]
Length = 645
Score = 252 bits (641), Expect = 2e-64, Method: Composition-based stats.
Identities = 105/647 (16%), Positives = 235/647 (36%), Gaps = 38/647 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++ VA I + +L +PF +G+ + F+ + TV +V + + +
Sbjct: 1 MLQTIRDRAQGIVAYIIVGLLIIPFAFFGVYNY-FTGDSNPTVATVNGIDITRAELDAAV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ + + +G N L ++LD LV A L FI G + I
Sbjct: 60 QRQQSQLRELLGDQYNPALFDESHLRPQVLDRLVDQAVLLYFIRSQGFRVTDESLRSFIR 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F D +FS + + + L + G + +Y + + VG + +
Sbjct: 120 SQPYFLA-DGQFSKERYRAVLRQSGYSTDQYEAQLRQQQLLRQLELGIVGTAVATKHEMA 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ ++R + ++ +++ + + Q++ +K + P ++SYI +
Sbjct: 179 RFVALERQSRDLAWLKIDSANFRDQTQVDAKAIQQYYATHKQAFEQPAQVKVSYIELSEN 238
Query: 241 EKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEA------------F 287
++E+ + +Q YE+ K+ ++ P+ R V ++ K+A +
Sbjct: 239 ALADQLELDDKAVQRFYEEFKDSRFTVPDARRVRHILIKLPKDASQHQIEVARGQIEALR 298
Query: 288 QSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+ + +G F +LA+ Q + LG + + D G+ + I
Sbjct: 299 ERIVQGASFAELAQRQSQDVGSARQSGDLGFVRQGEMAKA--IDEAAFKLPIGETSEPIR 356
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMD 402
FG+ + V+ + F EV+ I ++ ++ ++ + + S++
Sbjct: 357 SRFGWHLIEVTASRAGGVKPFSEVESQIRQELLKQQSGKRFYKLSNQAANYAYEHPDSLE 416
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
++ + + AG + ++ L D
Sbjct: 417 PLAAKFGLKIRQSNWFSQAGAKEGIASHPKV----VKAAFSDEVLKQGLNSQSIDLGDEH 472
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ +++ + PA R L EV V++ TV +E+ QL+ + K G++ + +
Sbjct: 473 QVILRVDQHKPAAVRPLAEVRDRVREHLVTVGASEQAQKLGAQLLEKA-KSGQSLEALAE 531
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTN 578
+ + R + + + F P + Y V +V
Sbjct: 532 ANQHARYSAVGWVRRGSNK--VPAAIVERGFRLPHPSSDALALAGIELSDGGYGVVEVRG 589
Query: 579 SKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ G E+ + L ++ + L ++I L+ Q V
Sbjct: 590 VRDGALDKLDAAERTQVRQGLQRLNAESTLQAMIHVLRQQADVEFDR 636
>gi|157962498|ref|YP_001502532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
ATCC 700345]
gi|157847498|gb|ABV87997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella pealeana
ATCC 700345]
Length = 621
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 117/637 (18%), Positives = 250/637 (39%), Gaps = 43/637 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ +AK L+++ + F G+S L S +V +++ S+ ++
Sbjct: 1 MLEKIREGSQGVIAKSILILVILSFAFTGVSSYL-GSSTEVAAATVNGEEISNSALEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++++ + + +L+ LV+ LDQ ++GL ++
Sbjct: 60 QNERSRLEQQLGDMFATLSADDNYMQSVKQSVLERLVAEKLLDQNAAELGLRVSDEQIKA 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D F +D + + L + G + D ++R +V VG
Sbjct: 120 AIMSEPAFQT-DGAFDNDRYQAILRQLGYQANSFRDMMRIDMTRRQLVATLVGSEFVLPS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R +DY V++ A ++ + +++ + PE ++YI
Sbjct: 179 EAKYVADLQGQTRDIDYKVIDATPFLADISVTDEQIKAYYDTNLGQFIRPEVVSLNYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
D + K + +++ E QA Y+++K Y E R ++ + +A+ ++ L
Sbjct: 239 DAKDLAKDVTVTDAEAQAYYDEHKANYTQAEKRLAAHILVQSGDDDAAAKAKAEAIYKQL 298
Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ G F +LA+ + + G + + + + ++F+L K G+++ V+ +FG
Sbjct: 299 QDGADFAELAKTESEDTFSGEQGGQLDWFEAGVMEPEFDTALFALNK-GEYSGVVKTNFG 357
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406
Y I +I+ F +VK+ I Q++ +A +K E + L + ++ E +R
Sbjct: 358 YHIIKALDIQAGAQAPFADVKEKILAQLKDKQAVDKFYELQQVLADTSYEVPDTLSEAAR 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
+ P + +LL F + L + + +
Sbjct: 418 DLGVEVKTTPEFTRT-------NPPELFTNPELLNEAFSSNVLLDRMNSDVLEVAPNHVV 470
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
+++ A +L +V + K + E +A + + G I K+
Sbjct: 471 VIRVNTHKAAGTMELADVRNAIANRLKQEQANEAARKQAQEAMTAVEASGVTADFIVKDK 530
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYVVFK-VTNS 579
+ + +++ F+ V + NG + VV K V +
Sbjct: 531 ------------LARFAQDVDGAIVNKAFAMAQPSDKPSVDTVALANGYAVVVLKQVNAA 578
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ D L+ +++ +VIA LK++ V
Sbjct: 579 EGVDANLLDSLKQRLSSQYSENDYRAVIASLKAKGEV 615
>gi|90410786|ref|ZP_01218801.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
profundum 3TCK]
gi|90328417|gb|EAS44715.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium
profundum 3TCK]
Length = 623
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 116/631 (18%), Positives = 240/631 (38%), Gaps = 24/631 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +R+ + K+ L ++ F+ G+ L + + ++ + F ++
Sbjct: 1 MMERLREGVNSIWVKVILGLIIFSFVFAGVGSYL-AGGSQPAAAKINGTEISQNEFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ + + +LD +++ ++Q ++GL +
Sbjct: 60 QNERNRMQSQLGDYFSTLLGDPEYVKQFRQSVLDRMINDVLIEQRATELGLRISDEHIRK 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F +D KF +D + L R G ++ ++ + RT + G +
Sbjct: 120 TITSMPEFQ-RDGKFDNDSYTMLLRRSGFTPDQFAEYMRTDMLRTQFLTAIQGSDFALDS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L ++ + R V + L+ A ++ ++E+ + PE +++YI
Sbjct: 179 ELTALRKLEAQQRVVRSLTLDLADFTKNATVTDEEAKVFYEQNPQMFTRPEQVKVAYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK----- 292
+ +++S+++++A YE++K+KY S E R V ++ +A K
Sbjct: 239 SGEGLKDTLDVSDEDVKAYYEEHKDKYSSIEQRQVSHILVQGDNADAKAKAEALKAELDA 298
Query: 293 GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F +LA ++ + L F + + D + D+ F LA GD + V+ SFGY
Sbjct: 299 GADFSELALSSSDDTYSAKDGGKLDWFERGVM-DPAFEDAAFGLANSGDVSGVVKSSFGY 357
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I + +K S F +V +I ++R +A+E + +L E + +
Sbjct: 358 HIIKLDAVKASQVKPFADVSAEIIVELREQQAAEHFYDMQTKLAETAFEMPDSLDDAA-- 415
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ V A P Q LF ++D L+ D + + + V++
Sbjct: 416 -AAVNATVHTTDFISQTDAQGVLATPAVMQALFSAEVREDGLNSD-VIEIAPEHVVVVRV 473
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+S +EV VK + K + KA+ L+ D+ + G S
Sbjct: 474 DDSRDEMVLAFDEVSAKVKAQLASQKGEQNAQIKADDLIAALRAGS---ADVLEAEGLSF 530
Query: 529 LTTNQINRMDNEN--KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
I+R + + V V + N + KV + V
Sbjct: 531 GEEQTISRSGPDRMVSQVAFSLTKPVDDKSVYGMTRDATGNVQIIALDKVIDVDVAKEAI 590
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
F + QM + + + + L+ V+
Sbjct: 591 SGDFAKQVEQMNAQQDVAATLQALRDTAEVS 621
>gi|119774365|ref|YP_927105.1| peptidyl-prolyl cis-trans isomerase D [Shewanella amazonensis SB2B]
gi|119766865|gb|ABL99435.1| peptidyl-prolyl cis-trans isomerase D [Shewanella amazonensis SB2B]
Length = 615
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 108/631 (17%), Positives = 246/631 (38%), Gaps = 34/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ ++ +AK LV++ + F G+S L S +V +++P S+ ++
Sbjct: 1 MLEKIREGAQGTIAKSILVLVILSFAFTGVSSYL-GSSTEPAAATVNGEEIPVSALEQAF 59
Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G + ++ + + +L+ +++ LDQ ++GL ++
Sbjct: 60 QNEKARMEQQLGEMFQTLAADDNYLRSIRQGVLERMIADKLLDQTASEMGLRISDEQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + KF ++ +++ L + G + D ++R +V +G
Sbjct: 120 AIMEEPAFQTEG-KFDNERYLAILRQLGYQTNSFRDMMRVDMTRRQLVNALIGSEFVLPS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R + Y+V+ ++ A ++ +++ D + PE + Y+
Sbjct: 179 ESKAVAELQGQTRDLRYLVVESQPFEAGITVADDEAKSFYDANPDQFIKPEQVSLEYLTL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------DEAFQSL 290
++ +++++ +A Y+++ +Y +PE R ++ + D + L
Sbjct: 239 SAKSLADEVSVTDEQAKAYYDEHMSQYKTPEKRLAAHILVNLGDDEAAAKTKADAIYAKL 298
Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ G F +LA+ + LG + ++ + D + +++F L K + V+ +G
Sbjct: 299 QAGADFAELAKTDSEDTFSGELGGQLDWFEQGVMDPAFDEALFGLEKDQY-SAVVKTDYG 357
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ I + +++ SF EVK I Q++ A +K ++L + +
Sbjct: 358 FHIIKLLDVQGGAQASFDEVKDRIFAQIKEKDALDKFYSLQQKLADTSYEVPDSLTEA-- 415
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
K +++ +++ E++ + V L D V+
Sbjct: 416 AKATGLEVKSTGLFAREMPPAEISNPALIKAAFSE--QVLLSGMNSDVVDLGDNQVAVVR 473
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+KE A +EV + K + +A +L+ ++ K G+ K
Sbjct: 474 VKEHKQAGTLPFDEVKAGIVARLTQDKANDAAKLQAQELLAKF-KAGEALELTAKAK--- 529
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF-KVTNSKVGPVQE 586
+ R D E +++ F V + +G + VV KV ++
Sbjct: 530 ------VARFDRE---LDPSIVNKGFQLAVGGADTISMASGYALVVLDKVNPAEGVEDAL 580
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
L+ + VI LK++ ++
Sbjct: 581 VQALAQRLSNQYTELAYRGVIDSLKAKAEIS 611
>gi|148260238|ref|YP_001234365.1| hypothetical protein Acry_1235 [Acidiphilium cryptum JF-5]
gi|146401919|gb|ABQ30446.1| hypothetical protein Acry_1235 [Acidiphilium cryptum JF-5]
Length = 628
Score = 251 bits (640), Expect = 2e-64, Method: Composition-based stats.
Identities = 116/632 (18%), Positives = 234/632 (37%), Gaps = 8/632 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML +IR+ W+ + F VVL F+ WG+S + + S + +VG Q + + ++
Sbjct: 1 MLSMIRQLLDNWIVRAFFVVLIGVFVFWGVSSVVMGIGASDAIATVGGQPIKIEAVNAAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ L + + + + L + A ++ +G+ A + ++
Sbjct: 61 QRTLNAYATQNSGR-EPSKGERRLFADQALGTAIDRAAMELEARRMGVVAPPAAIRQQVF 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FHG D KF F + LA + ++ L + ++ G+ L+D
Sbjct: 120 AIPAFHGPDGKFDKATFNAVLANHNLTPAAFMAEIASGLKTSQIIDAVTAGVSAPAPLVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + + R+V + L P+ VL +++ + + P + ++
Sbjct: 180 QIFAYAAQERTVQFAQLPFAAANPPPAPAETVLRRYWRDHPGRFSTPALRDADVVVLSPA 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +S E+ A+Y++ K K+ RTVE + + K A + K G + +
Sbjct: 240 LIARGEAVSQAEIAAQYQQEKAKFAQTPTRTVEIITAEDAKSAAALANAWKGGADWAAMQ 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ + + + + +K + A G+ + + G+ G + V+
Sbjct: 300 KAAAAATATAIVMTDAKPSDLPSATLAKAAFAATPGEVSAPVKGALGTYVFKVTKAVAGG 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
V I ++++ KA V L++ LA T++ ++ + + VD
Sbjct: 360 DKPLSAVADQIRAEIQLRKARNVVDNTLSHLQDALAGSTALGKLPASLHLAKARV-SVDR 418
Query: 421 AGKDVKGKE--VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
G V GK + Q + + P + V+ P SY + + I +
Sbjct: 419 EGMTVDGKPAGIPGPAALRQAIVKAIFATAPGNTPQAVSGPGDSYYAIAVHRIIKPALKP 478
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
++V DV DW + + A +L K GK G ++ T+ + R
Sbjct: 479 YDKVKADVLADWTGAQVERQ-EEVAAAKLLTAVKGGKTLAAAASAAGLTVTTSAPMTRAK 537
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQEK-DKFISYLTQ 596
K FS + G VV + K G + + L Q
Sbjct: 538 P-AKGVPPQLAQVAFSLKKGAPTMVQTQEGFVVGVVSDIAEPKPGSDKAFHQRVADSLGQ 596
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
M +D+L + A L+ + V ++ L+ + +
Sbjct: 597 SMQEDVLQTYAAALRQRDHVKINTKLLNQISN 628
>gi|304395503|ref|ZP_07377386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB]
gi|304356797|gb|EFM21161.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. aB]
Length = 622
Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats.
Identities = 107/629 (17%), Positives = 244/629 (38%), Gaps = 27/629 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R AS V KI L ++ V F++ G+ + L + V Q++ ++
Sbjct: 1 MMDNLRAASNNVVLKIILGLIMVSFVLTGVGNYLI-GGNNDYAAKVNGQEISRGQLEQAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E Q +G + S + ++ L L+ A LD +I+D+ L +V
Sbjct: 60 NSERSRQQQMLGDQFSQLASNDGYMQQIRQQALSQLIDQALLDSYIKDLHLSISDDQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I F + KF + +++ + G + +Y + K LS ++
Sbjct: 120 AIFNQQAFQT-NGKFDNAKYLALIGNMGFSADQYAEALRKQLSNQQLINAVANTDFTLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R + L+ + A ++ ++Q+++++K ++ APE R+SYIL
Sbjct: 179 EASKLVDLVSQQRDIRQATLDVNALAAKQTVTDDEISQYYQQHKTSFMAPEQFRVSYILM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + S ++QA Y+++K Y P+ + + +A+ LK G F
Sbjct: 239 --DAASMQQDASEADIQAWYDQHKADYTQPQRTRYSVIQTKTEADANAVLAQLKGGASFA 296
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+ + G P + + L +KG + VI S G+++ + +I
Sbjct: 297 DVAKAKSIDPISARKGGDMGWLEPSTTPDELKNAGLTQKGQMSGVIKSSVGFLVVRLDDI 356
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P +V+ IA +++ K + + +++ E + + ++ E+ +
Sbjct: 357 QPEQVKPLNDVRSAIAAKVKQEKGVDAFYKLQQKVSEAASN--DNESLAGAEQASGLKAK 414
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D + K+ + V P + + + ++I E P
Sbjct: 415 ETGWFSQDTLPDALNFDAVKQAIFNGGLVGQNGAPGNNSDIITVDGDRAFVLRISEHKPE 474
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ L++V + K K ++ ++A++L+ + + D G +L + +
Sbjct: 475 AVKPLDQVKAQITDTLKHDKATQQAKAQADKLLTDLKAGKQ---DALTAAGLTLSASKTV 531
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R + F+ P + + V+ V K G P + D
Sbjct: 532 DRNAQD------PVAQAAFNLPQPAENKPSWGVSEDMQGNVVLVAVDKVKTGSMPQAQID 585
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + +TQ + ++++ L+ + +
Sbjct: 586 EMVKGVTQNNAQLTFEALLQNLRKEAKIK 614
>gi|238764856|ref|ZP_04625797.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia kristensenii ATCC
33638]
gi|238696963|gb|EEP89739.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia kristensenii ATCC
33638]
Length = 627
Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats.
Identities = 124/636 (19%), Positives = 259/636 (40%), Gaps = 23/636 (3%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++ +R A+ V KI L ++ + F++ G+ L S V Q++ + +
Sbjct: 1 MDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRGQLEQAVQ 59
Query: 62 QELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
E G + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V
Sbjct: 60 SERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKDA 119
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I ++P F D KF + ++ + R G ++ + L ++ F +
Sbjct: 120 IRQAPYFQT-DGKFDNSKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPIE 178
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
+ R V L+ + + A ++ L ++++ K+++ APE +IS+I D
Sbjct: 179 AQAMSELILQQREVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAMD 238
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ KI I+ +++ A YE++K Y PE R + F + EA A LKKG F
Sbjct: 239 AAAMQDKITITEEDIAAYYEQHKSTYTQPEQRNYSVIQFKTEAEAKTALDELKKGADFAA 298
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+A+E+ + G P+ + + +L +KG + V+ S GY+I +++IK
Sbjct: 299 MAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDIK 358
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P+ EV +A Q++ KA + +++ E + + ++ E+
Sbjct: 359 PAQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEA--ATSDNESLASAEEAAGAKAKQ 416
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ +D EV P + + V P S + + ++I P
Sbjct: 417 TGWFTRDTVPTEVNFKPVVQAIFEGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPEG 476
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
++V V + K K + ++ + + K G S ++
Sbjct: 477 IEPFDQVRDQVAELVKRQKAEQLARIDGENILTALKQGKG--EEAMKAAGISFGEKKTLS 534
Query: 536 RMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKDK 589
R ++++ + +FS P V + + V+ ++ + G P E
Sbjct: 535 RAPDDDQ-----LVQTIFSLPHPQKDQPVYGLSQDRQDNIVLIELLSVTPGKLPEGEMKT 589
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
F++ + + + D+++A L+ Q ++ + Q+
Sbjct: 590 FVAKMEEGASGVTFDALMANLRKQATIKMGPAEQQQ 625
>gi|308185912|ref|YP_003930043.1| peptidyl-prolyl cis-trans isomerase D [Pantoea vagans C9-1]
gi|308056422|gb|ADO08594.1| peptidyl-prolyl cis-trans isomerase D [Pantoea vagans C9-1]
Length = 622
Score = 251 bits (639), Expect = 3e-64, Method: Composition-based stats.
Identities = 107/629 (17%), Positives = 243/629 (38%), Gaps = 27/629 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R AS V KI L ++ V F++ G+ + L + V Q++ ++
Sbjct: 1 MMDNLRAASNHVVLKIILGLIIVSFVLTGVGNYLI-GGNNDYAAKVNGQEISRGQLEQAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E Q +G + S + ++ L L+ A LD +I+++ L +V
Sbjct: 60 NSERSRQQQMLGDQFSQLASNDGFMQQMRQQALSQLIDQALLDSYIKELHLSISDDQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I F + KF + +++ + G + +Y + K LS ++
Sbjct: 120 AIFNQQAFQT-NGKFDNAKYLALIGNMGFSADQYAEALRKQLSNQQLINAVANTDFTLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R + L+ + A ++ ++Q+++++K ++ APE R+SYIL
Sbjct: 179 EASKLVDLVSQQRDIRQATLDVNALMAKQTVTDDEISQYYQQHKTSFMAPEQFRVSYILM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + S ++QA Y+++K Y P+ + + +A+ LK G F
Sbjct: 239 --DAASMQQDASEADIQAWYDQHKADYSQPQRNRYSVIQTKTEADANAVLAQLKGGANFA 296
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+ + G P + + L +KG + VI S G+++ + +I
Sbjct: 297 DVAKAKSIDPISARKGGDMGWLEPSTTPDELKNAGLTEKGQMSGVIKSSVGFLVVRLDDI 356
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P EV+ +A +++ K + + +++ E + + ++ E+ +
Sbjct: 357 QPEQVKPLDEVRSAVAAKVKQEKGVDAFYKLQQKVSEAASN--DNESLAGAEQASGLKAK 414
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D + K+ + V P + + + ++I E P
Sbjct: 415 ETGWFSQDTLPDALNFDAVKQAIFNGGLVGQNGAPGNNSDIITVDGDRAFVLRISEHKPE 474
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ LE+V + K K ++ ++A++L+ + D G +L + +
Sbjct: 475 AVKPLEQVKAQITDTLKHDKATQQAKAQADKLLTDLKAGKL---DALTAAGLTLSVSKTV 531
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R + F+ P + + V+ V K G P + D
Sbjct: 532 DRNAQD------PVAQAAFNLPQPADNKPSWGVSEDMQGNVVLVAVDKVKTGSMPQAQID 585
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + +TQ + ++++ L+ + +
Sbjct: 586 EMVKGVTQNNAQLTFEALLQNLRKEAKIK 614
>gi|238791435|ref|ZP_04635073.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia intermedia ATCC
29909]
gi|238729051|gb|EEQ20567.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia intermedia ATCC
29909]
Length = 628
Score = 251 bits (639), Expect = 3e-64, Method: Composition-based stats.
Identities = 121/637 (18%), Positives = 261/637 (40%), Gaps = 23/637 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + +
Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E G + Q++G ++ + L +++L LV+ LDQ+ + +GL A +V
Sbjct: 60 QSERGRLQQQLGEQFSALAANEGYMLQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F + KF ++ ++ + R G ++ + L ++ F +
Sbjct: 120 AIRQAPYFQTDN-KFDNNKYLELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPV 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R V ++ + + A ++ L ++++ K+++ APE ++S+I+
Sbjct: 179 EAQAMSELILQQREVRLATIDLKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKVSFIVM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + KI ++ +++ A YE +K Y PE R + F + EA A LKKG F
Sbjct: 239 DAAAMQDKITLTEEDIAAYYELHKSSYTQPEQRNYSVIQFKTEAEAKTALDELKKGADFA 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+E+ + G PD + + +L +KG + V+ S GY+I +++I
Sbjct: 299 AMAKEKSTDIISRKNGGELGWLEPDTTADELKQANLNEKGQLSDVVKSSVGYLIVRLNDI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP+ EV +A Q++ KA + +++ E + + ++ E+
Sbjct: 359 KPAQVKPLSEVHDALAKQVKQGKAVDAYYALQQKVSEA--ATSDNESLASAEEAAGAKAK 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D EV P + + V P S + + ++I P
Sbjct: 417 QTGWFTRDAVPAEVNFKPVVQAIFDGGLVGENGAPGSNSDVITVDGDRAFVIRIDAHKPE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ ++V V + K K + +L+ + D K G + +
Sbjct: 477 GIQPFDQVRDQVAELVKRQKAEQLARVDGEKLLTALKQGKG--EDAMKAAGITFGEKKAV 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R ++++ + +F+ V + + V+ ++ + G P E
Sbjct: 535 SRAPDDDQ-----LVQTIFALAHPQKEQPVYGLSQDRQDNIVLIELLSVTPGKLPEGEMK 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
F + + + + D+++A L Q ++ + Q+
Sbjct: 590 VFTAKMLEGASGVTFDALMANLHKQATIKMGPAEQQQ 626
>gi|259909248|ref|YP_002649604.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Erwinia
pyrifoliae Ep1/96]
gi|224964870|emb|CAX56392.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia pyrifoliae Ep1/96]
Length = 622
Score = 251 bits (639), Expect = 3e-64, Method: Composition-based stats.
Identities = 110/631 (17%), Positives = 248/631 (39%), Gaps = 32/631 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++ +R AS V K+ L ++ + F++ G+ L SG V Q++ + ++
Sbjct: 1 MDNLRAASNHVVLKVILGLIILSFILTGVGGYLTGGSG-DYAAKVNGQEIGRAQLERAFS 59
Query: 62 QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
E Q +G + + ++ L L+ L Q+ ++IGL ++
Sbjct: 60 SERARQQQMLGEQFSVLAGNEGYMQQMRQQALSQLIDEMLLTQYAKEIGLAIGDDQIKQA 119
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I P F D KF + ++S + G +Y + K L+ ++G G
Sbjct: 120 IFTQPAFQ-TDGKFDNAKYLSIINNMGFTADQYAEALRKQLTTQQLIGSVTGTDFVLGNE 178
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
D + R V + +N + A + + + ++++++ + +PE R+SYI D
Sbjct: 179 TDSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSPEQFRVSYIKMD 238
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ +S ++Q+ Y+++++ Y P+ + + EA +L KG F +
Sbjct: 239 ASAMLQ--PVSESDIQSWYQQHQDDYTQPQRNRYSIIQTKTEAEARSVLDALNKGGSFAK 296
Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+E+ + +G E PD + L +KG + VI S G+++A +
Sbjct: 297 LAKEKSADPISARNGGDMGWLEPETTPDELKNAA---LKEKGQLSDVITSSVGFIVARLD 353
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ +P + EV +IA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 DTQPEKVKALSEVHDEIARKLKQEKAVVAFYKLQQKVSDAASN--DNESLASAEQVAGVK 411
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
D+ +D E+ ++ + + P S + + ++I+E
Sbjct: 412 AVDTDWFDRDNLPAELKFKAVQDAIFNGALLGENGAPGSNSEVITVDGDRAFVLRIREHK 471
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
P + L++V + K K ++ ++A++L+ E D K
Sbjct: 472 PEAVKALKDVAAQITDTLKQQKGLQQAKAQADKLLAELKAGKG--DDALKAANLRFAAQQ 529
Query: 533 QINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVG--PVQE 586
+ R + FS P+ + + V+ + + G P +
Sbjct: 530 TLMRTGQD------ALTQAAFSLPLPPQGKPSYGISEDAQGNVVLIALDKVQKGEMPEAQ 583
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
K + +TQ + ++++ L+ + +
Sbjct: 584 KQALVQGITQNNAQLAFAAMLSNLRKEAKIK 614
>gi|17546434|ref|NP_519836.1| peptidyl-prolyl cis-trans isomerase transmembrane protein
[Ralstonia solanacearum GMI1000]
gi|17428732|emb|CAD15417.1| probable peptidyl-prolyl cis-trans isomerase transmembrane protein
[Ralstonia solanacearum GMI1000]
Length = 648
Score = 251 bits (639), Expect = 3e-64, Method: Composition-based stats.
Identities = 97/652 (14%), Positives = 225/652 (34%), Gaps = 40/652 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R R + L+++F F+ +G+ + GS VG + S
Sbjct: 1 MLDFVRTHRRLMFL-VLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ + Q +G + + + + +LD ++ + L +V I
Sbjct: 60 REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRETIE 119
Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P D KF D ++ LA +G+ +++ L + V
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+D+ + R V ++ A + + +++ ++ + E + Y++F
Sbjct: 180 LVDRLIEARDQQREVQALLFKPADYAAKVTVDDKAIQAYYDAHQQEFAVLEQVKAEYVVF 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
E K+I ++ ++L+ Y++N ++ + E R ++ A A
Sbjct: 240 SGEEMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299
Query: 287 --FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ K F +LA++ LG +K +++F+L + GD +
Sbjct: 300 VLAEVRKSPGSFAELAKKYSGDPGSAAQGGELGFLAKGATV-PPFENALFALKQPGDISD 358
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
V+ FG+ I + ++K S VK ++ ++R A++K E
Sbjct: 359 VVESDFGFHIIKLEDVKGGGVQSLDAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ ++ + K+ V G + LF + + V +
Sbjct: 419 SLKPVADKLKLQIQTADHVTRVPNPALGNSPVNNEKVLKALFADDVTKNHRNT-QAVQVG 477
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + + E PA +KL +V VK ++A + + +
Sbjct: 478 PTTLVAARAVEYRPATVKKLADVREQVKAKVLAEQSAALAKKAGEEKLAALKQSNS---- 533
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
+ G T ++R + + + + + + Y ++++
Sbjct: 534 -AEGFG----TAQTLSRQ--QAQGTPPAALVAILRADAAKLPVTIGVDLGAQGYALYRIN 586
Query: 578 NSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ LTQ + ++ LK++ V ++ +++
Sbjct: 587 KVLPPANVDPARRAADAQQLTQAAGQADFNAYYEALKARSKVKINGSVVDAA 638
>gi|46579478|ref|YP_010286.1| peptidyl-prolyl cis-trans isomerse domain-containing protein
[Desulfovibrio vulgaris str. Hildenborough]
gi|120602972|ref|YP_967372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
vulgaris DP4]
gi|46448892|gb|AAS95545.1| peptidyl-prolyl cis-trans isomerse domain protein [Desulfovibrio
vulgaris str. Hildenborough]
gi|120563201|gb|ABM28945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
vulgaris DP4]
gi|311233293|gb|ADP86147.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
vulgaris RCH1]
Length = 629
Score = 251 bits (639), Expect = 3e-64, Method: Composition-based stats.
Identities = 104/644 (16%), Positives = 228/644 (35%), Gaps = 38/644 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML++IR +++W K+ ++ V F+ WG+ +S V +V ++ + FI +
Sbjct: 1 MLDVIRGHAQSWGVKVAFGLIIVVFVFWGVGS--MQEGPTSVVATVNKKPIVIRDFIREY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ + + V ++ + +GL +++L +V+ + Q E +G+ + I
Sbjct: 59 ERQVESLRTRF-PGVTADELKKLGLKRQVLQQMVAETLMQQEAERLGITVTPYELRAAID 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F KF + + L + + + K + + + G ++
Sbjct: 118 QIPAFRDASGKFDPETYKKVLKAQQTVPGRFEEGVRKDMLGRKMRALVTAGAVVTDAEAR 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E RS+DY++ A A +A L W++ K + P+ R+ ++
Sbjct: 178 DMFTYAQEKRSIDYVLFPLDEYAAAASIEDAALQAWYDSNKARFTEPQKVRLDFVRISAE 237
Query: 241 EKEKKIEISNDELQAEYEKNKEK-YFSPEIRTVEQLVFPNQK---------------EAD 284
I+I + A Y +N + PE ++ + +A
Sbjct: 238 SLAAGIDIPETAIAAFYAENAASYFMQPERVRARHILVRVPEGADEATVRKAEERIADAA 297
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
++ K E G + + LG F + + + K G+ + +
Sbjct: 298 AQIKAGKDFAAVAAKVSEDGSARNGGELGWFGRGEMVKPFEDAA--FGLKPGEVSAPVRS 355
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FG+ + + + EV+ +I ++ KA EKV + E ++ G S+DEI
Sbjct: 356 QFGFHLIKSEGHEAQRQKALDEVRNEIRKRLAEEKAIEKVHDSLDNALELVSAGKSVDEI 415
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + K+ + A + K + F D + +G Y+
Sbjct: 416 AAQLKLERQTSEPLTRESAS------ATLGLKPADVTLAFSAPAGTVIDTPLE-AEGGYI 468
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
++ E P R +EV V + + A A++ + ++G+ +
Sbjct: 469 IARVAEVAPERIPGFDEVRDKVVVAVREDEGARLALKAADEALAG-VRDGQLPGALAS-- 525
Query: 525 GASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ T+ R N + FS + VV +V
Sbjct: 526 --RVKTSPLFGRDGNIPGLGVDPALAAAAFSAEKGVWSDKAHATPQGVVVLRVHEVVRPT 583
Query: 584 VQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ + +++ + + L ++ V V D +
Sbjct: 584 DAQWQAVASTVKETILAAKREEMFRAFLTTLHAKGKVEVKDASV 627
>gi|242240288|ref|YP_002988469.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Dickeya dadantii
Ech703]
gi|242132345|gb|ACS86647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dickeya dadantii
Ech703]
Length = 626
Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats.
Identities = 121/637 (18%), Positives = 249/637 (39%), Gaps = 30/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V K+ L ++ F++ G+ D L SG V Q++ + +
Sbjct: 1 MMDNLRAAANNVVLKVILALIVGSFVLTGVGDYLIRGSG-DYAAKVNGQEISRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + +G ++ L K+ L L+ +DQF ++GL +V
Sbjct: 60 QNERNRQQEMLGENFSALAANEGYMQQLRKQALSQLIDDTLIDQFARNLGLNISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F ++ +++++ + G+ Y K L +V G
Sbjct: 120 AIFSVPAFQTNN-RFDNEKYLAQVQQLGLTPDVYAQLLRKQLVTQQLVRGLGGSNFQLPQ 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D ++R++ ++ S+ + ++ + Y APE ++SYI+
Sbjct: 179 EIDNLVAIAAQDRTIRTATIDLDARAKTQTASDDEIQNFYNQNSSRYLAPEQFKVSYIML 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D KI + + + + YE++K ++ PE R + N+ +A + L KG F
Sbjct: 239 DAAAIMDKISVDSAAVSSYYEQHKSEFTQPERRKYSIIQLKNEADAKAVLEQLHKGADFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + LG D +L +KG + V+ S GY+I +
Sbjct: 299 ALAKEKSTDIVSRRNGGDLGWMDGNSTVDE---IKQANLQQKGQLSDVVKSSVGYLIVRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I+ S EV+ D+ ++++ KA ++ ++L E + + + EK I
Sbjct: 356 DDIQVQRVRSLDEVRGDLGDKVKREKALDEFYAQQQKLSEAASN--DNESLVSAEKASGI 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D+ +D + K+ +L P S + + ++I E
Sbjct: 414 KARQTDWFTRDNIPAALDFPQVKQAILNGTLTGENGAPGSNSDVINVDGDRAFVLRISEH 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L++V V + K K ++ A +++ + + + ++
Sbjct: 474 KPEATQPLDKVRDQVVQAIKRQKAEQQARVDAEKILADLKQGKNDTLTAAGLSFSAPRVM 533
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVGPVQ-- 585
+ + R D + VFS P + + V+ + N K ++
Sbjct: 534 SSVGRGDVMS--------EAVFSLPHPQKDKVSYGIAQDQVGNIVIVALDNVKARELEAA 585
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+K +F + + Q L DS+IA L + + + D
Sbjct: 586 QKKQFAAQIEQSALATLFDSLIANLHDEAKIKLGDAA 622
>gi|218710170|ref|YP_002417791.1| peptidyl-prolyl cis-trans isomerase D [Vibrio splendidus LGP32]
gi|218323189|emb|CAV19366.1| Peptidyl-prolyl cis-trans isomerase D [Vibrio splendidus LGP32]
Length = 621
Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats.
Identities = 112/631 (17%), Positives = 238/631 (37%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYITGGGN-NAAAKVGNTEIARGEFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ A K +LD +++ L+Q E +GL ++
Sbjct: 60 QNERNRMQSQLGDYFAQMLADPAYVESFRKSVLDRMINDVLLEQQAESLGLRISDSQIRT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F +F +V+ S L R G + + + ++ + L R +V G
Sbjct: 120 MILEMPQFQTAG-QFDQEVYQSALRRAGFSAESFAEYMRRDLMRNQLVTALQGSEFVLQG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + + R + + L+ + + ++ + Q++++ Y PE ++SYI
Sbjct: 179 EIDIQSKLIAQTRDIRTVTLSVADLAKTIELTDEQIEQYYQENPAAYTRPEQAKVSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++E+S++E Q Y+++ +KY + E R V ++ EA L G
Sbjct: 239 SAEALKSQLEVSDEEAQKYYQEHLDKYSTEEQRKVSHILVQGDDEAKAQSILDELNAGAD 298
Query: 296 FIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LAEE+ LG ++ + D + ++ F+L GD T ++ FGY I
Sbjct: 299 FATLAEEKSDDFGSADVGGDLGWIERDVM-DPAFEEAAFALENIGDTTGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K S + EV DI ++ A ++ E LE+ + S +
Sbjct: 358 KLDEVKASQAQPYTEVATDIKQELLDQHAVDQFYEQQTELEKVAFEFPDSLDDSAE--AI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + DF + + + + +L + + + + V+++E+
Sbjct: 416 NAKITTTDFISQADAPEVLMTPAVMQAILS--PEVKEDGLNSEVIEVAPEHVIVVRVEET 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L EV V VK ++ LV E + + +
Sbjct: 474 RDETVLPLAEVKDQVVAALSAVKAEQQAVELGVSLVNELKQGN---EAVLADNSLEFTEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI----ENGLSYVVFKVTNSKVG-PVQE 586
I+R + VF+ + + VV +++
Sbjct: 531 ETIDRNSP--------LAASVFALVKPEAGQAVFGQSKDQDGNIVVVELSKVTAEINPAY 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L ++ N+ L +V+ L+ V
Sbjct: 583 STQLGAQLERVGNQQDLTNVLNVLRKNSDVE 613
>gi|317154730|ref|YP_004122778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
aespoeensis Aspo-2]
gi|316944981|gb|ADU64032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
aespoeensis Aspo-2]
Length = 632
Score = 250 bits (637), Expect = 5e-64, Method: Composition-based stats.
Identities = 108/638 (16%), Positives = 232/638 (36%), Gaps = 33/638 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLEI+R+ + W+ KI ++ V F+ + + +V Q + + F +++
Sbjct: 1 MLEIMRENASGWIVKILFGIIIVVFVFA-FGMSGLETGQDPILATVNDQIITRAEFEDAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + V + + + +L L++ L +G+ A V+ I
Sbjct: 60 QRAAEGVR-TANPDVTPAQLQDPQFKQMVLGELINSRLLLHEAARLGISASDEEVFAAIT 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
R F + F D++++ L + + ++ + V M +
Sbjct: 119 RQSYFWNQAGAFDRDIYMAALRSIRMTPALFEANFKNEMIAGKVQDMVRKTGVATPEQAR 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + E VDYI+ + + +++ +D + PE RI Y+ F
Sbjct: 179 QIFDWVGEEVRVDYILSSPAAFAPQVRVDAKEVDEFYASNQDKFMVPEQVRIRYLAFTPK 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-------- 292
+ + E+S+ E+ A + N E L+ + Q+ +
Sbjct: 239 DLAARQEVSDPEIDAYFAANSASMKQEEQVKASHLLIMTSDSDSDEEQAEARKKIDAAYA 298
Query: 293 ----GKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
G F LA + + LG F + + + KG + +
Sbjct: 299 KAKAGGDFATLARQNSEGPSAAGGGDLGWFGRGDMVPEFEQAA--FSTPKGQVSEPVRTQ 356
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ I +V + K + ++ EV+KDIA + KA+E+V + + + L G ++D ++
Sbjct: 357 FGWHIIYVEDRKEARELALDEVRKDIAIAIAEEKAAERVTDLLDQAMDRLVSGMTLDAVA 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
++++ + G + + PLS +G YM
Sbjct: 417 DELGMLAVTSSPLPEQGLVQNFGLTPEAATVVMDIQKNESHKTPLSI-------NGGYML 469
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ E IPA ++EV ++ K A ++A +++ + + G + +
Sbjct: 470 VEKVEDIPAAPLPIDEVRDAIEGAITQQKAAALAMTEAQEILAQLT--GPDSAEAAARYA 527
Query: 526 ASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
A + T+ +R N F + P +V +++
Sbjct: 528 ARIKTSEPFDRQGNVPALGQSQALAEAAFGSAGKEWLPQPFAMQQGIIVARLSEVIPASE 587
Query: 585 ----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
++KD +I +Q ++L++ + L+ Q + +
Sbjct: 588 ETWAEQKDAWIDQASQNYQLEVLNAYMTGLRQQADIEI 625
>gi|77165248|ref|YP_343773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
ATCC 19707]
gi|254434944|ref|ZP_05048452.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
gi|76883562|gb|ABA58243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
ATCC 19707]
gi|207091277|gb|EDZ68548.1| PPIC-type PPIASE domain protein [Nitrosococcus oceani AFC27]
Length = 640
Score = 250 bits (636), Expect = 6e-64, Method: Composition-based stats.
Identities = 105/652 (16%), Positives = 250/652 (38%), Gaps = 41/652 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR ++ A + + ++ +PF +WG+++ + G + SV +++ F +++
Sbjct: 1 MLEAIRNRAQGIFAWVIVGLIAIPFTLWGINNYMLDG-GEALAASVNGEEISTREFRSAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ +G E + +++ LV + +GL + I
Sbjct: 60 LSYTQQLRFLMGASFPEEMLDDPATKQNVIEGLVEQRLVLDTAAKLGLGMSDSSLSQVIR 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ F G+ +F + + L +G+ Y L +V + ++
Sbjct: 120 SNKAFQGESGQFDSQRYEAVLGSQGLTPVAYEARLRSALLSEQLVSTLRLSAFTTQQEVE 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R + R + Y ++ + + + S + Q+++ + + +R PE ++ Y+
Sbjct: 180 AIARLQQQKREIGYSIVPSATFRDVIEVSADKVRQYYDDHPEEFRIPEQVKVHYLRLTAD 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEADEAFQ 288
I + L+ YE+++++Y PE R ++ Q++A+ F+
Sbjct: 240 SLATDIPLDEQTLRDFYEESEDQYRVPERRRASHILITVPPQGDEATRQQAQEKAEAVFE 299
Query: 289 SLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
L++G+ F ++A+E LG F + + D + +++FSL + G + +
Sbjct: 300 RLQQGEDFEEVAKEVSDDPGSAQKGGDLGFFGRGVM-DPAFEEAVFSLEETGALSEPVLS 358
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FGY I +++I+ F+ V +++A + R A E+ E + L+ E+
Sbjct: 359 KFGYHIIKLTDIEAGEVKPFEAVSEELAQRYRRQIAEEQFYEQAEILDNLTYENPFTLEV 418
Query: 405 SRR-EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDG 461
+ + G I +++ F ++ T+ L
Sbjct: 419 AAETLGLSIETSEPFSQNGGSG-------IAANPKVVAAAFSEEVLREEMNSQTIELAPN 471
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ V++ + + A + EEV ++++ + + + LV + G++ +
Sbjct: 472 DVVVVRLDKHLLADTKPFEEVREEIEEKLTLDQAMAQAQERGETLVAHLQQ-GESPETVF 530
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG-----LSYVVF-- 574
K G ++ ++ +++ + + + P P+ G Y V
Sbjct: 531 KEGGEAVWNEKKL--YARDDQEIPSEVLKMAYELPHPESPENPVFAGQPLGSGDYAVVGL 588
Query: 575 -KVTNSKVGPVQEKDK--FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+V N G + EK + + + + + I LKS+ + ++ +
Sbjct: 589 YRVENGNPGKLDEKARRSLAQEMEKAHGEMVYRDFIQELKSKADIKIYTENL 640
>gi|326403424|ref|YP_004283505.1| hypothetical protein ACMV_12760 [Acidiphilium multivorum AIU301]
gi|325050285|dbj|BAJ80623.1| hypothetical protein ACMV_12760 [Acidiphilium multivorum AIU301]
Length = 628
Score = 250 bits (636), Expect = 7e-64, Method: Composition-based stats.
Identities = 116/632 (18%), Positives = 234/632 (37%), Gaps = 8/632 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML +IR+ W+ + F VVL F+ WG+S + + S + +VG Q + + ++
Sbjct: 1 MLSMIRQLLDNWIVRAFFVVLIGVFVFWGVSSVVMGIGASDAIATVGGQPIKIEAVNAAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ L + + + + L + A ++ +G+ A + ++
Sbjct: 61 QRTLNAYATQNSGR-EPSKGERRLFADQALGTAIDRAAMELEARRMGVVAPPAAIRQQVF 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FHG D KF F + LA + ++ L + ++ G+ L+D
Sbjct: 120 AIPAFHGPDGKFDKATFNAVLANHNLTPAAFMAEIASGLKTSQIIDAVTAGVSAPAPLVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + + R+V + L P+ VL +++ + + P + ++
Sbjct: 180 QIFAYAAQERTVQFAQLPFAAANPPPAPAETVLRRYWRDHPGRFSTPALRDADVVVLSPA 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ +S E+ A+Y++ K K+ RTVE + + K A ++ K G + +
Sbjct: 240 LIARGEAVSQAEIAAQYQQEKAKFAQTPTRTVEIITAEDAKNAAALAKAWKGGADWAAMQ 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ + + + + +K + A G+ + + G+ G + V+
Sbjct: 300 KAAAAATATAIVMTDAKPSDLPSATLAKAAFAATPGEVSAPVKGALGTYVFKVTKAVAGG 359
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
V I ++++ KA V L++ LA T++ ++ + + VD
Sbjct: 360 DKPLSAVADQIRAEIQLRKARNVVDNTLSHLQDALAGSTALGKLPASLHLAKARV-SVDR 418
Query: 421 AGKDVKGKE--VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
G V GK + Q + + P + V+ P SY + + I +
Sbjct: 419 EGMTVDGKPAGIPGPAALRQAIVKAIFATAPGNTPQAVSGPGDSYYAIAVHRIIKPALKP 478
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
++V DV DW + + A +L K GK G ++ T+ + R
Sbjct: 479 YDKVKADVLADWTGAQVERQ-EEVAAAKLLTAVKGGKTLAAAASAAGLTVTTSAPMTRAK 537
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVG-PVQEKDKFISYLTQ 596
K FS + G VV + K G + L Q
Sbjct: 538 P-AKGVPPQLAQVAFSLKKGAPTMVQTQEGFVVGVVSDIAEPKPGSDAAFHQRVADSLGQ 596
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
M +D+L + A L+ + V ++ L+ + +
Sbjct: 597 SMQEDVLQTYAAALRQRDHVKINTKLLNQISN 628
>gi|262404271|ref|ZP_06080826.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC586]
gi|262349303|gb|EEY98441.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC586]
Length = 619
Score = 250 bits (636), Expect = 7e-64, Method: Composition-based stats.
Identities = 109/627 (17%), Positives = 246/627 (39%), Gaps = 24/627 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQSQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDQQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F +++ + L R G + ++ K L R ++ G
Sbjct: 120 MILDMPQFQSQG-QFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMSALQGSEFSLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLADFAKKVTLSDDDIQQYYKANTERFTRPEQMKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
+K+I I ++ Q Y+++ +KY + E R V ++ ++++A L G
Sbjct: 239 SADALKKQIMIDDEAAQEYYQEHLDKYSTAEQRKVSHILVEGSDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +A+E+ + +LG ++ + D + + F+L + G + ++ FGY I
Sbjct: 299 FATVAKEKSQDVGSAQEGGALGWIERDTM-DPAFEAAAFALTENGQISGLVKSEFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K + EV K + ++ +A + LE+ + + + K +
Sbjct: 358 RLDEVKAPVVKPYTEVAKAVKQELVDQQALDAFYTKQSELEKLAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + +A P Q L K+D L+ + + + V+++ES
Sbjct: 416 STQVEHTDFISAEQAPDLLAN-PAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRMEES 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L +V + V + +K ++ N++V N + G +
Sbjct: 474 RPETVLPLADVKSQVVEQLSRMKGEQQALELGNKIVAALKVGNSN---VLAENGVAFGEV 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590
I+R Q + + VV ++ + ++
Sbjct: 531 QMIDRSSPLANTVYSMVKPQ----DDAKGYAQAKDFDGNVVVIELNKVESKVTPAYHEQI 586
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L+++ ++ L VI+ L+ +
Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQNTDIE 613
>gi|253990887|ref|YP_003042243.1| peptidyl-prolyl cis-trans isomerase [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253782337|emb|CAQ85501.1| Peptidyl-prolyl isomerase [Photorhabdus asymbiotica]
Length = 623
Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 109/631 (17%), Positives = 244/631 (38%), Gaps = 27/631 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI L ++ + F++ G+ L S S V Q + + ++
Sbjct: 1 MMDNLRTAANSPVLKIVLALIILSFVLTGVGGYLTSG-TDSYAAEVNGQTISRAQLEQAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+QE M+ +++G + S + ++L+ L++ A +DQ+ +++GL A +V
Sbjct: 60 QQERNMLQEQLGDKFSVLASNEQSMKQIRSQVLERLINNALIDQYSQELGLSASDEQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I F + KF ++ ++ L R ++ + + L ++ F G
Sbjct: 120 AIRNISYFQ-INGKFDNNKYLDFLNRSNLSPDILAEQTRQNLINQQLIMAFSGSEIVLPS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R+V L + V + ++ L ++ K+++ APE +ISYI
Sbjct: 179 EVKLNAELFLQQRAVRLATLELKKVHVRQEVTDKDLQDYYNVNKNSFIAPEEVKISYIRM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ K+ +++ ++ + YE N ++Y PE + + + EA L KG F
Sbjct: 239 DAADEMDKVSVTSVDVDSYYEHNLKRYTQPEQKKYSLVQLATEVEAKIVLDELNKGADFG 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+LA E+ + +G ++ +P+ +L +KG + VI G+ I H+
Sbjct: 299 KLAAEKSTDKFSAKNKGEIGWMEEDSLPEEM---KKANLKEKGQISSVIKVPNGFAIFHL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE-KIVS 412
++KP T EV+ +I ++ KA + +++ + +
Sbjct: 356 DDVKPQITKPLSEVRSEIEKTIKQEKAVDAFYALQQKVSDAATSDNESLTSAEEVSGTKI 415
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ D + I + + D +++ +++
Sbjct: 416 VTTGWFDRNNVPAEINFGPVIHAIFEGNLVDVQGPTGANSD-VISVEGDRAFVLRVDNYK 474
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
P + E+V V + K K +++ ++ +L+ + + K+ G +
Sbjct: 475 PEIVQPFEQVKKQVTELVKRQKAEKQLQVESERLLAALKEGKA--EQVLKDAGIQFGESQ 532
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG----LSYVVFKVTNSKVG--PVQE 586
I R I VF+ P + V+ ++ G ++
Sbjct: 533 IIQRTSQ-----NNALIDAVFALPQPKEGKAEYGSVKNSLDDIVLIQLDKVTPGVISEEQ 587
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ +L+S++ L+ + V
Sbjct: 588 IKGMADGYQNEIGNAMLESLLINLREKAKVK 618
>gi|323700040|ref|ZP_08111952.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio sp.
ND132]
gi|323459972|gb|EGB15837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
desulfuricans ND132]
Length = 633
Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 108/640 (16%), Positives = 226/640 (35%), Gaps = 36/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
MLE++R+ + W+ KI ++ + F+ +G+S + SG TV +V Q + + +
Sbjct: 1 MLEVMRENASGWIVKILFAIIIIVFVFAFGMSG--LNSSGDPTVATVNGQAITRAEYEAM 58
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+++ + + + + RS + +L L+S L +G+ A V I
Sbjct: 59 YQRAAENLRR-TNPDLPPAQTRSPEFKQMVLGELISQKLLLGEAAKLGIRASDKEVAAGI 117
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
F + F + + L + ++ ++Y + L+ V S
Sbjct: 118 GAVDAFKDANGNFDQQRYQTALRDIRMTPGDFEENYRRDLTMEKVKDAVGVPADLSESQA 177
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Q + E ++DYI + + +++ +D ++ P + + F
Sbjct: 178 RQIFDWLGETAAIDYIEVLPTDFRNEIKIGETEIEAYYQANQDRFQIPAQVTLRTLAFTP 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQKEADEAF 287
K +++DE++A Y NK+ P + + D+ +
Sbjct: 238 ASLAKFQTVTDDEIKAYYAANKDSLEEPAQVHARHILVAVKESDSQADQEKAKARIDKLY 297
Query: 288 QSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
Q K G F +LA++ + + LG F K + + F+L K G + +
Sbjct: 298 QEAKAGADFAELAKKNSDGPSAPNGGDLGWFGKGAMI-PDFEKAAFALNKGG-VSEPVRT 355
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FG+ I V + K T +F E K +I ++ KAS++ + + + L G S+ +I
Sbjct: 356 QFGWHIIMVEDKKEGTTKTFDEAKDEIKARLAEEKASDQANDLLDQATDRLVSGMSLTDI 415
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + ++ + + + + P + +G YM
Sbjct: 416 ASELGLETVTTDP-------MPAQFLGQAFGMNADAAKAVSGLTPGQAYKSPVAVNGGYM 468
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
V+ E I L V + + K AE +A ++ + G + K
Sbjct: 469 LVEKVEDIAPSIMALNLVRQTIVNTLENQKGAELAGQEAEKIHAALT--GPDAEAAAKQY 526
Query: 525 GASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIE-NGLSYVVFKVTNSKVG 582
A + T+ NR N + F+ G VV ++
Sbjct: 527 AARIKTSRPFNRQGNIPELGQSEPLTKAAFNAEDNGWFKLVYTMPGGGAVVARLNKRIPA 586
Query: 583 PVQEKDKFIS----YLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + ++ Q ++ + + + L + +
Sbjct: 587 PEKTWEEQKQFWLTQAGQNYRREAVAAFMDDLSKNAQIDI 626
>gi|89095457|ref|ZP_01168368.1| peptidyl-prolyl cis-trans isomerase D, putative [Oceanospirillum
sp. MED92]
gi|89080287|gb|EAR59548.1| peptidyl-prolyl cis-trans isomerase D, putative [Oceanospirillum
sp. MED92]
Length = 627
Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 108/637 (16%), Positives = 229/637 (35%), Gaps = 32/637 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ +AKI + ++ V F ++G+ + GS+ +V ++V +
Sbjct: 1 MLQSIRDNSQGIIAKIIVGLIAVTFALFGVESLVSLTGGSNAPATVNGEEVSQQELVQGM 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + ++G + + +L+ L+ L Q E+ GL + I
Sbjct: 61 RLQRNQMLSQMGENADPGLLNDNLISSMVLEGLIEQKVLVQSAENQGLVFTDAMIDQLIV 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ F D KF F + L G++ Y K ++ + L+
Sbjct: 121 STKDFQV-DGKFDKVQFETVLRNAGLSPLSYRALVRKEKLTEQERIAYLLSAFTLSNELN 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ ++R Y L A S+ + +F + Y + E I YI+ D
Sbjct: 180 EIATLQNQSRDTRYFTLAAEPERAAQTVSDDEVADYFAQNSGQYLSDEQVAIEYIVLDRA 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------FQSLK 291
+ EK +E++ DE+ A Y++ + Y + E+R ++ E + A L
Sbjct: 240 DLEKDVEVTADEVSAAYQQMVDSYQAQELRQAAHIMVEISDEQEAAAAETKAKALLDRLN 299
Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G+ F +A+ + +G +++ D++ +KG + + FGY
Sbjct: 300 AGEDFAAVAQSDSDDPASAEMGGDLGVNEKGTFSAEFEDAL-YALEKGQISEPVQTEFGY 358
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ + ++ S +F+E K I + KA + L++ + E +
Sbjct: 359 HLIKLLDVVESEVPTFEEAKAGIERDLLNEKAELEFVAQLDTLKDVAFSSGDLVEPAETL 418
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ L AG + + + + L + ++I
Sbjct: 419 GLEIQTSELFSRAGNEAPITSEPKVLS----VTFDPSFLQEGVNSDPIELSSSKVVVLRI 474
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+ R+R L+EV + K AE +++KA+Q + + K+G+ + G+ +
Sbjct: 475 LDHQLPRERSLDEVKEVITATLLEEKVAEALTTKADQFIAKL-KQGEALESLAS--GSEV 531
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-------IENGLSYVVFKVTNSKV 581
++ I+R + +F P + + KVT +
Sbjct: 532 ISKTDISRGSQD---LPEQLREALFEMPKPAEGEASYAAVDLLDGSKAIVALEKVTENAA 588
Query: 582 GPVQEKDKFISYLTQMM-NKDLLDSVIAYLKSQYSVT 617
+E+ +++ L + LK + +
Sbjct: 589 DLNEEEQRYMGMLLNSRFGQQDYQDHSEQLKDKAEIE 625
>gi|213622668|ref|ZP_03375451.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. E98-2068]
Length = 599
Score = 249 bits (634), Expect = 1e-63, Method: Composition-based stats.
Identities = 116/614 (18%), Positives = 254/614 (41%), Gaps = 28/614 (4%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS---ERAR 81
F++ G+S L S + V Q++ + F N++ E + Q++G +
Sbjct: 1 FILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAFNNERNRMQQQLGDRYSELAANEGY 59
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
L +++L+ L+ A LDQ+ ++ L +V I +P F D KF ++ + + +
Sbjct: 60 MKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQV-DGKFDNNRYNAIV 118
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
+ G+ +Y L+ ++ G D+ + R V V++
Sbjct: 119 NQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNA 178
Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
+ A ++ ++ ++++ K + PE R+SYI D + +S+ ++QA Y+++
Sbjct: 179 LAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATMQA--PVSDADIQAYYDQHV 236
Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSK 317
+++ PE + + +A +L KG+ F LA+E+ + +G +
Sbjct: 237 DQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEE 296
Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
L ++ L +KG + VI S G+++A + +I+P+ EV+ DIA +++
Sbjct: 297 SATV-PELKNAG--LKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQ 353
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
KA + +++ + + + ++ E++ + + +D +E+ P +
Sbjct: 354 EKALDAYYALQQKVSDAASN--DNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVAD 411
Query: 438 QLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ V P + + V++ E P + L EV V K K
Sbjct: 412 AIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKA 471
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
++ A +L++E K GK + K G S ++R + + S
Sbjct: 472 EQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSL 525
Query: 556 PVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
P + + + N + V+ K G P +K + +TQ + + +++++ L+
Sbjct: 526 PTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLR 585
Query: 612 SQYSVTVHDNLIQR 625
+ + + D L Q+
Sbjct: 586 KEAKIKIGDALEQQ 599
>gi|157374684|ref|YP_001473284.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
HAW-EB3]
gi|157317058|gb|ABV36156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
HAW-EB3]
Length = 621
Score = 249 bits (633), Expect = 2e-63, Method: Composition-based stats.
Identities = 114/638 (17%), Positives = 245/638 (38%), Gaps = 45/638 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ +AK LV++ + F G+S L S + +V +++ S+ ++
Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYL-GSSTEAAAATVNGEEISESALEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++++ + + +L+ LV+ LDQ D+GL ++
Sbjct: 60 QNERARLEQQLGEMFAALSADERYLSSVKQSVLERLVAEKLLDQTATDLGLRVSDAQIKN 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D F +D + + L + G + D ++R +V VG
Sbjct: 120 AIMTEPAFQT-DGVFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVASLVGSEFVLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R + Y ++ A A ++ +++ + +PE + YI
Sbjct: 179 EANYLADIQGQTRDIRYHWVDAAPFIAEAVVTDEQAKSYYDANLAQFMSPETLSLEYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------DEAFQSL 290
+ + + +S++E + Y++NK++Y E R ++ + + + L
Sbjct: 239 NAKDMAAGVTVSDEEAKTYYDENKQQYLKAEKRLAAHILVSLGDDDSTAKAKANAIYAKL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ G++F +LA+ + + L F + D + KG+++ V+ SF
Sbjct: 299 QAGEEFSELAKAESEDTFSGEQGGQLDWFEPGVM--EPAFDEVLYSLSKGEYSAVVKTSF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEIS 405
GY I + +++P+ +F++VK I Q++ +A ++ + L + ++ E +
Sbjct: 357 GYHIIKLLDVQPAAEAAFEDVKSKILAQLKEKQAVDQYFGLQQTLADVTYEVPDTLSEAA 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSY 463
I P+ A ++L F + L + +
Sbjct: 417 TELGIEVKSTPVFSRNNA-------PAPFDNPEVLKAAFSTNVLLDRMNSDVIEIEANHA 469
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
M V+IK A +V + + + + + E +KA +L+ +S +
Sbjct: 470 MVVRIKSHTAAGTVDFAKVKSAIVERLQQEQANEVARAKAQELMTSFS---------SDS 520
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP--IENGLSYVVFKVTNSKV 581
G +T ++ R D E + + F + Y V +
Sbjct: 521 AGIDFITKTKLGRFDQEIDG---AIVGKAFQMAQPAASAVVDTVALASGYAVVVLDKVNA 577
Query: 582 GPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ L+ ++ ++IA LK+ V
Sbjct: 578 AEAIDDNMLSSLKQRLSSQYSEGDYRALIATLKANGEV 615
Score = 42.9 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 23/322 (7%), Positives = 75/322 (23%), Gaps = 10/322 (3%)
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+L E+ + LG + ++ + ++
Sbjct: 93 ERLVAEKLLDQTATDLGLRVSDAQIKNAIMTEPAFQTDGVFDNDRYQAILRQLGYQANSF 152
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ + + + + + + + +
Sbjct: 153 RDMMRTDMTRRQLVASLVGSEFVLPGEANYLADIQGQTRDIRYHWVDAAPFIAEAVVTDE 212
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+ ++ + + E+
Sbjct: 213 QAKSYYDANLAQFMSPETLSLEYIELNAKDMAAGVTVSDEEAKTYY------DENKQQYL 266
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ + + + + +KAN + + + G+ F ++ K + Q +
Sbjct: 267 KAEKRLAAHILVSLGDDDST--AKAKANAIYAKL-QAGEEFSELAKAESEDTFSGEQGGQ 323
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-LT 595
+D +V + ++ Y + K+ + + + S L
Sbjct: 324 LDWFEPGVMEPAFDEVLYSLSKGEYSAVVKTSFGYHIIKLLDVQPAAEAAFEDVKSKILA 383
Query: 596 QMMNKDLLDSVIAYLKSQYSVT 617
Q+ K +D ++ VT
Sbjct: 384 QLKEKQAVDQYFGLQQTLADVT 405
>gi|315127185|ref|YP_004069188.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D)
[Pseudoalteromonas sp. SM9913]
gi|315015699|gb|ADT69037.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D)
[Pseudoalteromonas sp. SM9913]
Length = 633
Score = 249 bits (633), Expect = 2e-63, Method: Composition-based stats.
Identities = 123/636 (19%), Positives = 251/636 (39%), Gaps = 29/636 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ VAK+ L + + F + G+ L + V V K+ + F ++
Sbjct: 1 MLEKIREGSQGPVAKVILGAVILSFALAGIGSYL-GQTTEQPVAEVNGIKISQTEFSRAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q+ G ++ + + ++D LV Q ++GL +
Sbjct: 60 QNERSRLEQQFGEYFTQIAADPTYMAQIRQGVIDRLVQQELQSQLATELGLRVSDESIRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D +F++D ++ + + + ++ ++R+ +V G
Sbjct: 120 TILELPYFKIGD-QFNNDRYLQVIRQMNFQPDSFREYLRDDMTRSQLVSAVAGTDFALQN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L A + RS+DY+V++ + + A D ++ + ++E + +PE ++YI
Sbjct: 179 ELKSAIALQQQTRSIDYLVIDKQAMQADVDVTDQEVADYYELNAGQFLSPELISVNYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------FQSL 290
D + + +S D+++A YE++K +Y PE R V ++ N ++ D A L
Sbjct: 239 DADDIDV-ASVSEDDVKAYYEQSKAQYVEPEKRRVSHILIDNSEDDDAAKAKAESLLAQL 297
Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G F QLAE + +G + + + + + D+ F+L KGD++ V+ FG
Sbjct: 298 NAGADFAQLAESSSDDIVSAEMGGDLEWIERDVMEPAFEDAAFALQNKGDYSDVVASEFG 357
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y I +++I+ + VK D+ ++ + + E + + + +
Sbjct: 358 YHIIKLTDIQSQQVKPYDAVKADLRAELEQAEKVDAFYEKQTEMGALAFEISDRLDDAAE 417
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
V + + + A+ + + + + L + + V+
Sbjct: 418 VAGVEVQSTPLLALSALPEPLNNPAVITALSSVELL----EDKVNSEVIELGNEHVIVVR 473
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ E PA + L EV +K + K ++ KA L + K+GK+ D+ S
Sbjct: 474 VNEHQPAATKALSEVSEQIKTRLENEKASDLAKEKARTLFAQI-KDGKSLNDVAAEQSLS 532
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVGPV 584
+ +Q+ R ++QVF V N + + + PV
Sbjct: 533 VRQESQLTRESF---AVSPAIVTQVFKMAHPRDGAVYDVVNLNNGDAAIVALNSVTDAPV 589
Query: 585 QE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + +T + I LK Q + V
Sbjct: 590 SDSIEPQMKQNITMAQAQKNYTVFIESLKQQAELNV 625
>gi|238751010|ref|ZP_04612506.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia rohdei ATCC 43380]
gi|238710700|gb|EEQ02922.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia rohdei ATCC 43380]
Length = 628
Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats.
Identities = 118/629 (18%), Positives = 251/629 (39%), Gaps = 23/629 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + +
Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++ + +++L LV+ LDQ+ + +GL A +V
Sbjct: 60 QSERSRMQQQLGEQFSALAANEGYMQQMRQQVLGQLVNNMLLDQYAKKLGLTASDAQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F + KF + +++ + + G ++ + L ++ F
Sbjct: 120 AIRQAPYFQTEG-KFDNSKYLALVNQMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R V L+ + + A ++ L ++++ K+++ APE +IS+I
Sbjct: 179 EAQAMSELILQQRDVRLATLDLKALQAQQKVTDEELQAYYDQNKNSFIAPEQMKISFIAM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + KI ++ +++ A Y+ +K Y PE R + F + +A A LKKG F
Sbjct: 239 DAAAMQDKITVTEEDITAYYDLHKSSYTQPEQRNYSVIQFKTEADAKAALDELKKGADFA 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+A+E+ + G PD + + +L+ KG + V+ S GY+I +++I
Sbjct: 299 TIAKEKSTDIISRKNGGELGWLEPDTTADELKQANLSDKGQLSDVVKSSVGYLIVRLNDI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP EV +A Q++ KA + +++ E + + ++ E+
Sbjct: 359 KPEQVKPLSEVHDALAKQVKQEKAVDAYYALQQKVSEA--ATSDNESLASAEEAAGAKAK 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D +V P + + V P S + + ++I P
Sbjct: 417 QTGWFTRDAVPADVNFKPVIQAIFDGGLVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V V + K K + +++ + + K G S +
Sbjct: 477 GIEPFDQVRDQVAELVKRQKAEQLARVDGEKILTALKQGKG--EEAMKAAGISFGEKKTL 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R + + VF+ P V + + V+ ++ + G P E
Sbjct: 535 SRAPGD-----EQLVQTVFALPHPQKDQPVYGLSQDRADNIVLIELLSVIPGKLPEGEMK 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
FI+ + + + D+++A L Q ++
Sbjct: 590 TFIAKMEEGASNVTFDALMANLHKQATIK 618
>gi|114777815|ref|ZP_01452746.1| peptidyl-prolyl cis-trans isomerase D [Mariprofundus ferrooxydans
PV-1]
gi|114551806|gb|EAU54346.1| peptidyl-prolyl cis-trans isomerase D [Mariprofundus ferrooxydans
PV-1]
Length = 636
Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats.
Identities = 106/648 (16%), Positives = 244/648 (37%), Gaps = 35/648 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE +R ++ W+AKI L + + F++WG+ D + + +V + + + F ++
Sbjct: 1 MLESMRSHAQGWIAKIILGGIALSFVLWGVGDYFL-GGKTEPIATVNGKAIGGAEFYQAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++L +G +S S+G+ + L L++ + + + L A V +
Sbjct: 60 ERQLNAYRSMLGKQYSSALMDSLGVKETTLQTLINRRIMLDTAQQLHLAAPASVVLATVH 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGI-NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F F + + G + ++Y + + + V + S +
Sbjct: 120 SDPSFQSARG-FDVQRYHALTRNMGFSSAQDYENDLRLNIMVDALHKALVDSVHVSETEI 178
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
++ R + +V++ S+ W+E +K NY++P ++ + D
Sbjct: 179 RDRFNHDYQQRVLAAVVVDPATQLNKVKVSDEQAKAWYEAHKQNYKSPLRINVNTVEIDP 238
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV---------------FPNQKEAD 284
+ + +++ E++ +EK K ++ PE R + ++ + A
Sbjct: 239 RKLAEDVQVDESEVRKAFEKRKAEFSRPEERKAQHILIKVAENAPEAVRAAARKKIEAAQ 298
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
++ + + E G + S LG F + + + D KG + ++
Sbjct: 299 ARIKAGEDFSAVAKAVSEDGTASSGGELGWFKQGSMV--TAFDQAVFAMDKGQVSDIVET 356
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FGY + + +I+P+ S+ +VK I + +A+E+ + + L+E L + S+
Sbjct: 357 PFGYHLIRLEDIRPAHEASYDDVKDGIRQDLVKARAAEEAYKLSQDLDEALGMEDSLKAA 416
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + +I+ LV + +A + + P V DG Y+
Sbjct: 417 ATSLDLKTINSGLVSR------DEALAVPVLSDPEIAAKAFSTLPGQAVEIVETSDGRYV 470
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
V++ E + +V V D + A++ + A+++ GK+ ++ +
Sbjct: 471 AVEVTERVEPDVLPYAKVARRVLTDARLDAAAKQAAVIADEI---RHSTGKSLDELAQQY 527
Query: 525 GASLLTTNQINRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
G + + + + + Q FS + Y +V
Sbjct: 528 GQAKYISKPVRSNGQGDNASWLSQALLKQAFSTKAGAWVDQSVHVPQGYAAVRVQQVIAA 587
Query: 583 PVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
E KD+ + + + +A ++ +Y +T + + RY
Sbjct: 588 SEAEYNKQKDQIAAEVRKAKGAARFARWMASVRDRYEITTNPKELDRY 635
>gi|220934121|ref|YP_002513020.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995431|gb|ACL72033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
HL-EbGR7]
Length = 633
Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats.
Identities = 106/645 (16%), Positives = 242/645 (37%), Gaps = 34/645 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR + W+A + ++++ +PF +WGL++ F + + V V ++P ++ +
Sbjct: 1 MLQKIRDKATGWIAYVIVILISIPFALWGLNEY-FGGAPAQVVAEVNGVEIPARAYQQEF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+ ++Q G + S + + L L+ + Q ED G V EI
Sbjct: 60 QQQRQQLAQMFGGRIPSGAVDENMMRENALQTLIRRELVAQMAEDKGFRISASAVASEIR 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F +D F + + + + + E+ + + + +++
Sbjct: 120 AVPGFQ-RDGVFDPERYRQIMESQRRSPAEFEARVAQAMLLEQFQSGYQRSAFLPEAMVE 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R E R V S + ++ ++ + ++ PE R++Y+L D
Sbjct: 179 DFVRLRHERRQVSVHRFPAEAYAERVQVSEDDIAAFYAEHGEQFQTPERLRLAYLLLDDA 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQKEADEAFQ 288
+++ ++ D+L+ EYE+ +++ PE R + V + A EA
Sbjct: 239 TLAEQVSVTEDDLRREYEQRSDRFTQPEERRASHILIRVEPGADADTVAAAEARAREARA 298
Query: 289 SLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
++ G+ F ++A + LG ++ I + + + GD + +
Sbjct: 299 RIEAGEDFAEVARAVSDDPMAETAGGDLGYIARGDI--DPTLEGVLFTMRVGDVSQPVRT 356
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
G I +++I+ + F+ V+ ++ + R + E +RL E
Sbjct: 357 GLGLQIVRLTDIEAARREPFEAVRDEVEAEFRSRRVEGLHIELTERLLTESFEQPGTLEP 416
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + + D+ + + +A+ P ++ F + + LPDG +
Sbjct: 417 AAE--ATGLSIAFTDWFTRQGADEGIASEPEVLRVAFS--QEVRQGRNSDLIDLPDGRVV 472
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
V++ E PA R LEEV +++ ++ + + + + G + + L
Sbjct: 473 VVRLHEYEPAAPRPLEEVAEEIRLQLVWEESRRLAEADGARALEAL-QAGSGWAQSLEGL 531
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSK 580
T ++R ++ S+VF+ V YV+ + S+
Sbjct: 532 PGESTTELWVSR---DSGELPGAVTSRVFTLNRPADDRPVFSGLSLRDGDYVLVALYASE 588
Query: 581 VGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
G ++ L + +++ L++Q + + +
Sbjct: 589 PGEVRPARMNEARQQLANLYGGLEFEALYQALEAQAKIRIFRENL 633
>gi|167624682|ref|YP_001674976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
halifaxensis HAW-EB4]
gi|167354704|gb|ABZ77317.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
halifaxensis HAW-EB4]
Length = 621
Score = 248 bits (632), Expect = 2e-63, Method: Composition-based stats.
Identities = 118/637 (18%), Positives = 250/637 (39%), Gaps = 43/637 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ +AK LV++ + F G+S L S +V +++ S+ ++
Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYL-GSSTEVAAATVNGEEISNSALEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++++ + + +L+ LV+ LDQ ++GL ++
Sbjct: 60 QNERSRLEQQLGDMFATLSADDNYMQSVKQSVLERLVAETLLDQNAAELGLRVSDEQIKA 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D +F +D + + L + G + D ++R +V VG
Sbjct: 120 AIMTEPAFQT-DGRFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVATLVGSEFVLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R +DY V++ A ++ + +++ D + PE + YI
Sbjct: 179 EAKYLADLQGQTRDIDYKVIDATPFLADISVTDEQIKTYYDSNLDQFIRPEVVSLDYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-------NQKEADEAFQSL 290
D + K +++++ + QA Y+++K Y E R ++ + +A+ ++ L
Sbjct: 239 DAKDLAKDVKVTDADAQAYYDEHKANYTQAEKRLAAHILVQAGDDDAAAKAKAEAIYKQL 298
Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ G F +LA+ + + G + + + + ++F+L K GD++ V+ +FG
Sbjct: 299 QDGADFAELAKTESEDTFSGEQGGQLDWFEAGVMEPEFDTALFALNK-GDYSNVVKTNFG 357
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406
Y I + +I+ F +VK+ I Q++ +A +K E + L + ++ + ++
Sbjct: 358 YHIIKLLDIQAGAEAPFADVKEKIIAQLQEKQAVDKFYELQQVLADTSYEVPDTLVDAAK 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
+ + LL F + L + + +
Sbjct: 418 DLGVEVKTTVEFART-------NPPELFSNPDLLKEAFSSNVLLDGMNSDVLEVEPNHVV 470
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
+++ A L +V + K + E +A +L+ G I K+
Sbjct: 471 VIRVNTHKAAGTMDLADVRNAIANRLKQEQANEAARKQAQELMTAVEASGVTSDFIVKDK 530
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFK-VTNS 579
A + +++ FS V + NG + VV K V +
Sbjct: 531 LARFE------------QDVDGAIVNKAFSMAQPSDKASVDTVALANGYAVVVLKQVNAA 578
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ + L +++ +VIA LK++ V
Sbjct: 579 EDVDASLLEALKQRLNSQYSENDYRAVIASLKAKGEV 615
>gi|238754239|ref|ZP_04615596.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia ruckeri ATCC 29473]
gi|238707486|gb|EEP99846.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia ruckeri ATCC 29473]
Length = 627
Score = 248 bits (631), Expect = 3e-63, Method: Composition-based stats.
Identities = 120/629 (19%), Positives = 254/629 (40%), Gaps = 23/629 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ L S V Q++ + S
Sbjct: 1 MMDNLRAAANNVVLKIILALIMLSFILTGVGGYLIGGSN-DYAAKVNGQEISRAQLEQSM 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G + L ++IL L++ LDQ+ + +GL A +V
Sbjct: 60 QSERSRLQQQLGEQFSVLAGNEGYMQQLRQQILGQLINNMLLDQYAKQLGLSASDEQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + P F + KF ++ ++ + R G ++ + L ++ F
Sbjct: 120 SIRQLPYFQTDN-KFDNNKYLELVNRMGYTPDQFAQIQRQQLINQQLLQAFSETGFALPA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R V L+ + + A ++ L ++E+ ++++ APE +IS+I
Sbjct: 179 EAQAMSELILQQREVRLATLDLKALQAKQTVTDEELKAYYEQNRNSFIAPEEMKISFIEM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++KI ++ +++ YE+++ + PE R + F N+ +A A LK G F
Sbjct: 239 DAAAMQEKITVTEEDIATYYEQHRSSFTQPERRNYSVIQFKNEADAKTALAELKNGADFT 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA+E+ + G P+ + + +L +KG + V+ S GY+I +++I
Sbjct: 299 TLAKEKSTDIISRKNGGELGWLEPETTADELKQANLTEKGQLSDVVKSSVGYLIVRLNDI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP EV +A +++ KA + +++ E + + ++ E+
Sbjct: 359 KPEQVKPLSEVHDALATKVKQEKAVDAYYALQQKVSEA--ATSDNESLASAEEAAGSKAK 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D ++ P + + V P S + + ++I P
Sbjct: 417 QTAWFTRDAVPAQLNYKPVIQAIFEGALVGENGAPGSNSDVITVDGDRAFVIRIDGHKPE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ ++V V + K K ++ +++ + + K G S I
Sbjct: 477 GVQPFDQVRDQVAELVKRQKAEQQARVDGEKILTALKQGKG--EEAMKAAGLSFGEKKMI 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPI----ENGLSYVVFKVTNSKVG--PVQEKD 588
R +++ VF+ P V+ + + V+ ++ + G P E
Sbjct: 535 ARAPGDDQ-----LAQTVFALPHPQVEKPVYGLSQDRQDNIVLIELLSVTPGKLPEDEMP 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
F + + + +N LD++IA L Q ++
Sbjct: 590 NFTTKMAEGINGIALDALIANLHKQATIK 618
>gi|262276274|ref|ZP_06054083.1| peptidyl-prolyl cis-trans isomerase PpiD [Grimontia hollisae CIP
101886]
gi|262220082|gb|EEY71398.1| peptidyl-prolyl cis-trans isomerase PpiD [Grimontia hollisae CIP
101886]
Length = 630
Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats.
Identities = 128/635 (20%), Positives = 242/635 (38%), Gaps = 33/635 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +R+ + KI L ++ F+ G+ L S S +VG +++ + F ++
Sbjct: 1 MMERLREGVNSIAVKIILGLIIFSFVFAGVGGYLASGSVQ-PAATVGNEEISRNQFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E ++ + G + S+ +L+ +V+ + LDQ +++GL ++
Sbjct: 60 QNERALMQAQAGDFFSQLLSDPNYLAQFRFNVLERMVNQSLLDQEAQNLGLRVSDDQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F G F +D++++ L R G+ ++ D+ + L R +V +
Sbjct: 120 TIREMPAFRGATGLFDNDLYLASLRRNGLTPDQFADYVRQDLVREQLVNALISSEFALKG 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+ + + R+V + L AD + T ++E+ + PE +I+Y+
Sbjct: 180 ELEALHKLEGQTRTVRTLTLPLADFAEKADITAEQKTAYYEQNPAEFVRPEQFKIAYVEL 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKK 292
++ DE +A YE NK Y + E R V ++ +++A+ L
Sbjct: 240 SGEGIADVAGVTEDEAKAYYEANKASYGTAEQRKVSHIMIQGDDNAAKEKAEAVLSELNA 299
Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F +LA+ + L F K + D + ++ F+L KGD T V+ FG+
Sbjct: 300 GADFAELAKTRSDDTFSAEQGGQLDWFDKGVM-DPAFEEAAFALNNKGDITGVVQSDFGF 358
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I + ++KPS F +V+ DI Q++ A EK L E E +
Sbjct: 359 HIIKLDDVKPSDAKPFAQVRDDIMAQLKQQHAVEKFYALSNELAEKAFEMPDNLEDA--A 416
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
V+ + F +A + ++ D + + + V++
Sbjct: 417 NAVNAKVERTAFVSLQELEGVLANPQVVQ--ALQLPEVRDDGLNSELIEIAPEHVVVVRV 474
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
E P +EV V + K K E + AN LV E S+ K G +
Sbjct: 475 DEVRPETVLPFDEVEAQVTEQLKRQKGEEAAEALANTLVAELSQGN---DAGLKASGYAF 531
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVGPV 584
++ R+ E + + F+ +V + K
Sbjct: 532 GDETELTRVSPE-----REVVDLAFTMAAPADGKAQYGMTRAVSGDVLVVALDAVKEPAT 586
Query: 585 QE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ + + + L+SVIA LK +V
Sbjct: 587 ESISLDSQLAERVIRATANLDLESVIAQLKENTNV 621
>gi|91793843|ref|YP_563494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
denitrificans OS217]
gi|91715845|gb|ABE55771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
denitrificans OS217]
Length = 625
Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats.
Identities = 110/638 (17%), Positives = 222/638 (34%), Gaps = 39/638 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ VAK LV++ F G+S L S V V +V S ++
Sbjct: 1 MLEKIREGSQGVVAKGILVLVIFSFAFAGVSSYL-GTSTDLPVAIVNGDEVSTSELEQAF 59
Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E I Q++G + ++ G+ + +L+ LV +DQ +GL ++
Sbjct: 60 QNERSRIEQQLGDMFETLAADDTYMAGIKQSVLEKLVGDKLIDQAAFALGLRVSDEQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D F + + + L + G + + ++R ++ VG +
Sbjct: 120 AIVSEPAFQT-DGVFDNSRYQAVLRQLGYQAVSFKNMMRVDMTRRQLLSALVGSEFALDG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q + R + Y+ + + A ++ +++ + Y +PE + Y+
Sbjct: 179 EAKQLAEVQGQTRDIRYLTVESNQFLADNSVTDEEAQAYYDANQSQYLSPEKVSLEYLEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK----- 292
+V E K I S +E++A Y++++++Y + E R ++ +
Sbjct: 239 NVAELAKDITTSPEEVKAYYDEHQKQYQTAEKRLAAHILINKSDDDAADEAKAAAILAKL 298
Query: 293 --GKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G+ F LA E++ L F + D +KG + ++ F
Sbjct: 299 TAGESFEALAKTDSEDKFSGEQGGKLDWFEPGVMAPA--FDEALFSLEKGAHSGLVSTEF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEIS 405
GY I + +++ F +V+ I Q++ KA +K +L + ++ + +
Sbjct: 357 GYHIIKLLDVQAGQLAPFADVEAKIVAQIQEKKALDKFYGLQTKLADTSYEIPDTLVDAA 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ L D + + I + + +
Sbjct: 417 KAIGASIKTTELFDRNAVPAEFNQADFI-----KAAFSDQVLASGMNSDVIEIAPNHILV 471
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++KE A V + + K E +KA + + +
Sbjct: 472 VRMKEHQAAGTLSFSSVKDSIIARLQQDKAKEAALNKAVEYMAQLK------DSTFDASS 525
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN---GLSYVVFKVTNSKVG 582
SL T ++ R + ++ F PV I+ Y + +
Sbjct: 526 LSLTTQAKLGRYSQD---VDSGIAAKAFQMPVPAKDAVSIDTAELASGYAIILLDKVNPA 582
Query: 583 P---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
LT ++ +IA LK++ +
Sbjct: 583 EGINDNVLSAMKQRLTPQYSEADYRGLIASLKAKADIE 620
>gi|332532266|ref|ZP_08408147.1| peptidyl-prolyl cis-trans isomerase PpiD [Pseudoalteromonas
haloplanktis ANT/505]
gi|332038364|gb|EGI74809.1| peptidyl-prolyl cis-trans isomerase PpiD [Pseudoalteromonas
haloplanktis ANT/505]
Length = 633
Score = 247 bits (629), Expect = 5e-63, Method: Composition-based stats.
Identities = 124/633 (19%), Positives = 245/633 (38%), Gaps = 29/633 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ VAKI L + + F + G+ L + V V K+ + F ++
Sbjct: 1 MLEKIREGSQGPVAKIILGAVILSFALAGIGSYL-GQTTEQPVAEVNGIKISQTDFNRAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q+ G ++ + + ++D LV Q D+GL V
Sbjct: 60 QNERSRLEQQFGEYFTQIAADPNYMAQIRQGVVDRLVQQELQSQLAADLGLRVSDESVRK 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F KF++D ++ + + + ++ K ++R+ VV G
Sbjct: 120 TILELPYFQ-IGEKFNNDRYLQVIRQMNFQPDAFREYLRKDMTRSQVVSAVAGTDFALES 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L A + RS+DY+V+N + A + S+ ++ +++ + +PE +SYI
Sbjct: 179 ELKSAIALQQQTRSIDYVVVNKEALAANVEVSDQEVSDYYDLNASQFLSPELISVSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK------ 291
+ +++D+++A YE+NK +Y PE R V ++ N ++ D A +
Sbjct: 239 KAADINV-ESVTDDDVKAYYEQNKAQYVEPEKRRVSHILIDNSEDDDAAKEKANALHAQL 297
Query: 292 -KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+G F +LA+ + +G + + + D + D+ F+L KGD + V+ FG
Sbjct: 298 EQGADFAELAQSSSDDIVSGEMGGDLEWIERDVMDPAFEDAAFALENKGDISDVVTSEFG 357
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y I +++I+P ++ +VK D+ ++ + + E + + + +
Sbjct: 358 YHIIKLTDIQPQQVKAYDDVKADLRAELEQAEKIDAFYEKQTEMGALAFEISDRLDDAAE 417
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
V + + + A+ + + + + L D + V+
Sbjct: 418 VAEVEVKSTPLLALNALPEPLNSPAVVTALTSVDLL----EDKVNSEVIELGDEHAIIVR 473
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
I E A + L+EV ++K K++E KA L E + GK+ D+ +
Sbjct: 474 INEHKAAATKPLDEVSEEIKARLVNEKSSELAKEKARSLFAE-VQAGKSLNDVANEQSLT 532
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVGPV 584
L ++ R ++Q F V N + + + V
Sbjct: 533 LRQEAKLTRQSYT---VSPAIVTQAFKMAHPADSAVVDLVNLNNGDAAIVALKSVTDAQV 589
Query: 585 QE--KDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ +T I LK+
Sbjct: 590 AANIDPQAKQSITMAQANKNYMVFIEALKANAE 622
>gi|332305578|ref|YP_004433429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola
agarilytica 4H-3-7+YE-5]
gi|332172907|gb|AEE22161.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola
agarilytica 4H-3-7+YE-5]
Length = 627
Score = 247 bits (628), Expect = 5e-63, Method: Composition-based stats.
Identities = 110/637 (17%), Positives = 236/637 (37%), Gaps = 30/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ ++ A L ++ + F+ G+ + S S + V + + + ++
Sbjct: 1 MLERIREGTQGTWAMAILGLVILSFVFAGVGSYINS-SADTAAAKVNDETISQADLERAY 59
Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E G + + G ++ A + +LD L+ ++Q D+GL ++
Sbjct: 60 QNERGRMESQYGEAFAALTADSAYLQQFRQGVLDRLIGDKLIEQAAVDLGLRVSDAQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF ++ + + L + G E+ D+ ++R + +G
Sbjct: 120 AIVAMPEFQ-FDGKFDNERYSAVLRQAGFQPNEFRDYMRVDMTRRQLSNALLGSEFTLLE 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
QA + + R Y+ + S + + +++ + + ++Y+
Sbjct: 179 ETTQAYKLQQQTRDARYLTVPADMFKGDVTVSQSDVENYYQANITQFDTQQQVSLAYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-------EAFQSL 290
V + IE+S DE + YE+N + + + E R ++ + + +
Sbjct: 239 SVDDLLAGIEVSEDEAEQYYEQNIQDFRTQEERRASHILIEFGDDQQKAEQQAEDILAKI 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G+ F +LAE + L FS + D + D+ F+L GD + V+ F
Sbjct: 299 NNGEDFAELAETFSSDTFSAENGGDLDWFSMG-MMDPAFEDAAFALQNVGDVSDVVESEF 357
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ I ++++KP T F +VK+D+ +++ +A E+ R+ E +
Sbjct: 358 GFHIIKLTDVKPEETSPFADVKEDVIAKLKAERAEEEFYAKQLRMAEVAFETPDTLDEVA 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
I +D+ +D + V Q D + L D M++
Sbjct: 418 A--IAEVDVKTTVMFSQDSAPQAVNYPNVVSQAFSDELINDQ--VNSDVIELEDNHVMFI 473
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + R + L+EV ++ + + A ++ + + +N D + G
Sbjct: 474 RVADYEAQRTKSLDEVSVEINDILLAEQAQQAAKEWAETVLSDIQSQ-QNVSDKLQTKGI 532
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVG-- 582
N + R ++ ++ +F + + ++ G
Sbjct: 533 EWQEQNAVTRNASQ---VSPAVVTALFKLTDGEESNGQVVELFNGDVALVQLLEVNEGAD 589
Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + LT M + I L+ Q V +
Sbjct: 590 LPSSDAAALQNRLTTMRAQFTYSEFINALREQADVEI 626
>gi|294141764|ref|YP_003557742.1| peptidyl-prolyl cis-trans isomerase D [Shewanella violacea DSS12]
gi|293328233|dbj|BAJ02964.1| peptidyl-prolyl cis-trans isomerase D [Shewanella violacea DSS12]
Length = 621
Score = 247 bits (628), Expect = 6e-63, Method: Composition-based stats.
Identities = 110/637 (17%), Positives = 240/637 (37%), Gaps = 43/637 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ +AK LV++ + F G+S L S + +V + + S+ ++
Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYL-GSSTEAAAATVNGEDISESALEQAY 59
Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G + + + K +L+ LV+ LDQ ++GL ++
Sbjct: 60 QSERARLEQQMGDMFQALAANDTYLASVKKSVLERLVAEKLLDQSATELGLRVSDEQIKN 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D +F +D +++ L + G + + ++R +V VG
Sbjct: 120 AIMIEPAFQT-DGQFDNDRYLAILRQLGYQANTFRNMMRTDMTRRQLVASLVGSEFVLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R + Y +++ A A ++ +++ + +PE + YI
Sbjct: 179 ETSYLAGIQGQTRDIRYHIVDASPFVADAKVTDEQAQSFYDANLSQFMSPETLSLEYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------DEAFQSL 290
+V + + +++ E Q Y++NK++Y PE R ++ + + + L
Sbjct: 239 NVADMANDVSVTDAEAQTYYDENKQQYLKPEKRLAAHILINLGDDESVSKAKAEAIYAKL 298
Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ G F +LA+ + + LG + ++ + D + D + KG ++ V+ SFG
Sbjct: 299 QAGDDFSELAKTESEDTFSGELGGKLDWFEQGVMDPAF-DEVLYSLSKGSYSTVVKTSFG 357
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISR 406
Y I + +++P F +VK +I +++ A + + L + ++ E +
Sbjct: 358 YHIIKLLDVQPGVEAPFADVKDNIIAELKDKAAVDTYYGLQQTLADVTYEVPDTLSEAAT 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
+ P+ A ++L F + L + L M
Sbjct: 418 ELGVKVKTTPVFTRTNA-------PAPFDNPEVLKAAFSTNVLLDSMNSDVIELDTNHAM 470
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
++IK A +V + + K + E KA + ++ + + K
Sbjct: 471 VIRIKSHTAAGTVNFTKVKAGIVERLKQEQANEVAREKAQTSMNAFNDTHSSADFVTK-- 528
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGLSYVVFKVTNSKVG 582
++ ++ ++ F P + + Y V +
Sbjct: 529 ----------TKLGRFDQGIDTAITNKAFQMAQPADTAVVDTVALANGYAVVVLDKVNAA 578
Query: 583 ---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ L+ ++ ++IA LK++ V
Sbjct: 579 EGIDDNLLNSLEQRLSAQYSEGDYRALIATLKAKGDV 615
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/303 (9%), Positives = 81/303 (26%), Gaps = 9/303 (2%)
Query: 323 VSLADSI-FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
S D+ + +A+ ++ + ++ + K + A+
Sbjct: 215 QSFYDANLSQFMSPETLSLEYIELNVADMANDVSVTDAEAQTYYDENKQQYLKPEKRLAA 274
Query: 382 EKVKEDYKRLE--EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
+ + A + + D ++ GK
Sbjct: 275 HILINLGDDESVSKAKAEAIYAKLQAGDDFSELAKTESEDTFSGELGGKLDWFEQGVMDP 334
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
F TV Y +++ + P + +V ++ + K +
Sbjct: 335 AFDEVLYSLSKGSYSTVVKTSFGYHIIKLLDVQPGVEAPFADVKDNIIAELKDKAAVDTY 394
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV-- 557
L + + LG + TT R + F + + FS V
Sbjct: 395 YGLQQTLADVTYEVPDTLSEAATELGVKVKTTPVFTRTNAPAPFDNPEVLKAAFSTNVLL 454
Query: 558 -EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
M + +V ++ + K + + + + ++ + V + +
Sbjct: 455 DSMNSDVIELDTNHAMVIRIKSHTAAGTVNFTKVKAGIVERLKQEQANEVA---REKAQT 511
Query: 617 TVH 619
+++
Sbjct: 512 SMN 514
>gi|212636023|ref|YP_002312548.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
piezotolerans WP3]
gi|212557507|gb|ACJ29961.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
piezotolerans WP3]
Length = 619
Score = 247 bits (628), Expect = 6e-63, Method: Composition-based stats.
Identities = 116/635 (18%), Positives = 245/635 (38%), Gaps = 41/635 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ +AK LV++ + F G+S L S +V +++ S+ ++
Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYL-GSSTEVAAATVNGEEISNSALEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E G + Q++G ++++ + + +L+ LV+ LDQ ++GL ++
Sbjct: 60 ENERGRLEQQLGDMFSTLSADDNYMQSVKQSVLERLVAEKLLDQNAAELGLRVSDEQIRT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + P F D +F +D + + L + G + D ++R +V VG
Sbjct: 120 AIMQEPAFQT-DGRFDNDRYQAILRQLGYQANSFRDMMRVDMTRRQLVATLVGSEFVLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R ++Y+V+++ A A ++ + ++ + PE ++YI
Sbjct: 179 EAEYLANIQGQTRDINYLVIDSTPFLAAASVTDEQIQTYYNSNLGQFVRPEIVSLNYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-----AFQSLKK 292
D + + ++ + + Y++NK +Y PE R ++ ++ E +Q L+
Sbjct: 239 DAKQLAADVTVTEADAKTYYDENKVQYLQPEKRLAAHILIGLDEDNAEEKAEAIYQKLQN 298
Query: 293 GKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
G+ F LA+ + + G + + + + D+ KG ++ V+ +FGY
Sbjct: 299 GEDFAALAKAESQDTFSGEQGGQLDWFEAGVMEPEF-DAALFALDKGSYSNVVKTNFGYH 357
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRRE 408
I +I+ F +VK+ I Q++ +A +K E + L + ++ E +R
Sbjct: 358 IIKALDIQAGAEAPFADVKEKIIAQLQEQQAVDKFYELQQVLADTSYEVPDTLSEAAREL 417
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWV 466
+ P A+ K +L F + L + + + +
Sbjct: 418 GVEVKTTPEFTRNSA-------PALFSKPAILKEAFSSNVLLDGMNSDVLEVEANHVVVI 470
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ A +L EV + K + E +A + + +G + K+ A
Sbjct: 471 RVNSHKAAGTMELAEVRDGIAGRLKQEQANENARQQAQDAMTAFKADGSTAGYLVKDKLA 530
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGLSYVVFKVTNSKVG-- 582
+ +S+ F+ P + + Y V +
Sbjct: 531 RFE------------QDIDGAVVSKAFAMAQPTDTATVDTVALATGYAVVVLNKVNAAEG 578
Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
D L ++ +VIA LK++ V
Sbjct: 579 VDENLIDALKQRLNSQYTENDYRAVIAGLKAKGEV 613
>gi|311695072|gb|ADP97945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [marine bacterium
HP15]
Length = 614
Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats.
Identities = 114/630 (18%), Positives = 234/630 (37%), Gaps = 31/630 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++ +AK+ + +L V IWG+ + SG V +V + + F+
Sbjct: 1 MLQDIRNNAQGTIAKVIIGLLIVSLSIWGMDAIVGGFSGEPEVATVNGEDITEREFLRVV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E ++ + + +LD+L+ L Q GLE + + I
Sbjct: 61 QMESQRRLSRM-ENPDPSMLDEDQIRTDVLDSLIQEQVLIQDANAQGLELNDADIDALIT 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F D +F+ D FV+ + G+ E+ + K + V ++ +
Sbjct: 120 QMPQFQV-DGQFNRDRFVATVRNMGMGVGEFREAMRKQYVVNQIRAGIVQSGLVADENAE 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + + RS + + V S+A + ++E+ ++ PE +YI +
Sbjct: 179 QLLQIQNQTRSFRVLDIPASSVADAVSVSDADVEAFYEENSGAFQQPERVDAAYITLSLG 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF---QSLKKGKKFI 297
+ IE+ + ELQA YE+ S E R L+ + + L G+ F
Sbjct: 239 ALAESIEVDDAELQAYYEQQAADLASEERRASHILIEEGSDADETMATIQERLAAGESFA 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA E LG + + + ++G+ + + SFG + +
Sbjct: 299 DLAREYSIDTVSAEDGGDLGYAGRGIYAEP--FEEALFALEEGEVSEPVRTSFGVHLIRL 356
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++ S S E++ + ++ KA E+ E L + + + +
Sbjct: 357 EDVRESEVPSLDEMEDQLRRELAREKAREQFAEVRAELADSAYAADDLAGPAEELGLEVR 416
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ V G G+ + LF D + + + D + ++ +
Sbjct: 417 EANGVTRDG----GQAPFDHAGLVRQLFSEDVLDAGYNT-ELIDVGDNVSVVARVNKYHE 471
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
A L++V ++ + KT E +S +A+ ++ + + G++ IG +
Sbjct: 472 AEQLPLDQVRDQIRTTLEQRKTREALSERADAIIADL-ESGQSPEGIG-----EWSSYEG 525
Query: 534 INRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---- 587
+ R +E G + QVFS P + + S V + G V E
Sbjct: 526 LARNASEA---GPAILQQVFSLPRPADGARFGKAVMANSAAVIALDEVTDGQVSEDGTEL 582
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ +L + + + +L+++ V
Sbjct: 583 NQLREFLASLEGQREYAAYQQFLRNRAEVE 612
>gi|114563758|ref|YP_751271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
frigidimarina NCIMB 400]
gi|114335051|gb|ABI72433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
frigidimarina NCIMB 400]
Length = 625
Score = 246 bits (627), Expect = 7e-63, Method: Composition-based stats.
Identities = 113/640 (17%), Positives = 241/640 (37%), Gaps = 43/640 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ VAK LV++ + F G+S L S +G V ++ + ++
Sbjct: 1 MLEKIREGSQGIVAKTILVLVILSFAFAGVSSYLGSNTGV-PAAVVNGDEIGANELEQAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E I Q++G + + + + G+ + +LD L++ +DQ +GL ++
Sbjct: 60 QNERSRIEQQLGEMFTALAADDSYMNGIKQGVLDRLIADKLIDQAANKLGLRVSDEQIKK 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D +F ++ +++ L + G + + ++R ++ VG +
Sbjct: 120 AIIEEPAFQ-TDGQFDNERYLAVLRQLGYQTTSFRNMMRVDMTRRQLLNALVGSEFVLDG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q + R + Y+V+++ + ++ +++ Y +PE + Y+
Sbjct: 179 EAKQLAEVQGQTRDIRYLVVDSTPFLSTVSVADEEAQSYYDANISQYMSPEKVSLEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK------ 291
+V + K E S++E++ YE+NK +Y + E R + +
Sbjct: 239 NVADMAKSSETSDEEVKTYYEENKAQYQTAEKRLAAHIFVAATDDDSADKAKADAIEAKL 298
Query: 292 -KGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G+ F +A ++Q + L F + + D + +++F L K + ++ F
Sbjct: 299 TAGEDFADVAKADSDDQLSAQQGGKLDWFEQGVM-DPAFDEALFGLQKDQ-VSSIVKSEF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEIS 405
GY I + +++ S +F+ VK I Q++ KA + +L + ++ E +
Sbjct: 357 GYHIIKLLDLQASQATAFENVKAKIVAQLQEKKALDVFYSLQTKLADTSYEIPDTLAETA 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSY 463
+ L +V A + + F S + L
Sbjct: 417 QAVNAKVQSTQLFSR-------DDVPAKFNNPEFIKAAFSDQVLASGLNSDVIELAPNHV 469
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ +++K+ A +EV + + K K + KA + + +
Sbjct: 470 VVIRMKKHQTAGVMSFDEVKAGIVERLKQDKANDGARDKAAEYMAQLKAGNDKL------ 523
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN---GLSYVVFKVTNSK 580
GASL T ++ R + + ++ F I+ Y V V
Sbjct: 524 TGASLTTLAKLGRFNQD---IDQAITNKAFKIAAPAENSVTIDTAALATGYAVIVVDKVN 580
Query: 581 VGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + ++ +V+A LK+ +
Sbjct: 581 KAEGINDNLINTLKQRIAPQYSEADYRAVVASLKADAEIE 620
>gi|237653309|ref|YP_002889623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
gi|237624556|gb|ACR01246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
Length = 631
Score = 246 bits (627), Expect = 8e-63, Method: Composition-based stats.
Identities = 105/649 (16%), Positives = 241/649 (37%), Gaps = 47/649 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E +R R VA++ L +L VPF +G+ ++ VG + F +
Sbjct: 1 MFEAVRNNKR--VAQVILALLIVPFAFFGMDAYFSDSGSANEAARVGGTTIGAWEFDQAL 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ + Q G V+ +S L + +L+NL++ L + + L ++ IA
Sbjct: 59 REQQDRLRQDGGGQVDRALLQSAELRRAVLENLINQRVLALYAAENRLVVTPQQLQETIA 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F ++ FS + + L +G+ + + + +V
Sbjct: 119 GVASFQ-ENGSFSLQRYETLLRAQGMTPATFEARLAQDVRVQQIVAAVGDAGIVPQASAR 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+RSV L+ + + A +A ++ ++E + P + Y++FD
Sbjct: 178 RFLDAQLESRSVREFRLSAKALAADVKVDDAQVSAYYEANPTRFERPARLQAEYLVFDRA 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-------------FPNQKEADEAF 287
E+ +E+++D ++A Y+ N +++ PE R ++ +
Sbjct: 238 AVERGVEVADDAVRAFYDGNPQRFGVPEERQARHILLALDQGAEQAEVDRVMAEARALVE 297
Query: 288 QSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
Q +F LA+E+ + + LG F++ + + +KG +
Sbjct: 298 QLRADPARFAALAKEKSQDPGSAGNGGDLGFFARGVMVGA--FEDAVFSLQKGVIGEPVR 355
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
FG I V++IKPS F+ V+ +I ++R +A + E ++ + +
Sbjct: 356 SDFGVHIVEVTDIKPSSVKPFEAVRAEILAELRAQEAGRRFAELAEQFSNTVYEQPDSLQ 415
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDG 461
+ + + D+ +D E+++ +FG + + + +G
Sbjct: 416 PAAE--ALGLKTATTDWISRDSAPAP----LADERVISALFGDEAVQKSRNTEAIEIGNG 469
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ + ++K PAR L+EV + + + + + + +++ + + G
Sbjct: 470 TLVSARVKAFEPARRLPLDEVRERIVELVRIEQGRVKATRAGEEMLAALRRGEQPAARWG 529
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNS 579
+ + VFS E + YV++++
Sbjct: 530 EARKL-----------QRGAPGLPAAAMQAVFSASAETLPVHVGVQSTEGDYVLYRIEAV 578
Query: 580 KVGPVQEKD----KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + + D Q++ + ++ L+ +Y VT++ +Q
Sbjct: 579 ERAQIGDADPRVAAVTGQYKQLLAGRDFGAFLSELRQRYEVTINPTALQ 627
>gi|260428591|ref|ZP_05782570.1| putative peptidyl-prolyl cis-trans isomerse D [Citreicella sp.
SE45]
gi|260423083|gb|EEX16334.1| putative peptidyl-prolyl cis-trans isomerse D [Citreicella sp.
SE45]
Length = 615
Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats.
Identities = 111/631 (17%), Positives = 241/631 (38%), Gaps = 28/631 (4%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
+ I VL F+ +G + G+ ++ SVG + + + + + E+
Sbjct: 3 RGKSGITKYIVWGVLIASFVGFGAFGTVNFTGGAGSIGSVGDTTIETTDYARALQNEMRA 62
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+ + G V E+AR GL ++L +V+ A LD+ +G+ RV ++ FH
Sbjct: 63 VEAQTGQPVTLEQARQFGLTDQVLAQVVTNAALDEETRQLGILVGDERVAEDLRNVQAFH 122
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
G D F + L G+ E E+ D + +R+ + + G + ++ +
Sbjct: 123 GPDGNFDRSAYSYALQNAGLKEAEFEDSLRQESARSILQAAVLSGTTLPDTYVNTLLGWV 182
Query: 187 FENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
E R + L+ + P++ L W+++ D + PE K I+Y
Sbjct: 183 GETRDFTWAKLDRDALTTGLPVPTDEELQAWYDENIDQFTLPETKVITYAWLTPDMIVDT 242
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQG 304
+E+ L+ YE+ ++ PE R VE+LVF ++ EA A + G+ F + E+G
Sbjct: 243 VEVDEQALRDAYEERHAEFNMPERRLVERLVFSSEDEAQSAADRIASGETDFEGVVAERG 302
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
++ D +G ++ + + A+ G + G + V+ + F
Sbjct: 303 LAIIDTDMGDVTRASLGEAG---DAVFGAEVGAVVGPEPTNLGPALFRVNGVLAEQVTPF 359
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
+E D+ + + + +A ++ + L++ LA G +++E+S+ + + + +
Sbjct: 360 EEAVPDLRDALVLDRARRVIEGMSQDLDDELAGGATLEELSQDTDMELGQIEWSETSDTG 419
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+ G + L DG +++ E E+V
Sbjct: 420 IAGY---------EAFREAAQAVQDADYPAIDDLGDGGVFALRLDEQRDPAPAPFEDVRD 470
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
+V + W+ + E + ++A +L S G ++ G S + + R +
Sbjct: 471 EVAQLWEQDQATEALVAQAEELATAISGGGS-----FEDSGLSPTQESGLTRNQPI-EGL 524
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK------DKFISYLTQMM 598
+ VF+ + P + +V ++ + D+ +
Sbjct: 525 PAAILEAVFTMEPGEARALP--GNGAALVVRLDGVTPVDMDAPQVTQVGDQLRDQAANSV 582
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
D+ ++ ++S+ V+V + + L
Sbjct: 583 ANDIFRALNTDIQSRAGVSVDQSAVNAVLSN 613
>gi|256830955|ref|YP_003159683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium
baculatum DSM 4028]
gi|256580131|gb|ACU91267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfomicrobium
baculatum DSM 4028]
Length = 632
Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats.
Identities = 103/647 (15%), Positives = 244/647 (37%), Gaps = 37/647 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+I+R+ +++W KI ++ F++ ++ V +V + F F
Sbjct: 1 MLDILRQGAQSWGIKILFGIIIAVFVLA-FGMNRVQNDQTTVVATVNDSPILFRPFQERL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ L + + + +E +G ++IL+ +V + Q +GL + EI
Sbjct: 60 QRSLELARSQ-NPNLTAEILAQMGFKRQILEQMVIEELMMQQAAKLGLTVSKEELAKEIH 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + N F + + L + ++ Y + + + R
Sbjct: 119 LIPAFQNESNVFDPASYQNVLRANNLTPGKFESEYMRGMVMDKLRTYVGLPGRLGEDQAR 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ ++ Y++ + + ++A + +++E K NY P +I Y+L
Sbjct: 179 DFYTYGRSTATISYLMYPWENYQNQVNATDARINEYYEARKANYAVPARAKIDYLLLTPA 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQKEADEAFQ 288
+S +E + Y + KE++ E L V + A +
Sbjct: 239 TLADPAAVSPEETEKYYAEQKEQFKIEEQVKASHLLVRVDENADEESVEKAMQTIKAAQK 298
Query: 289 SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
L GK F ++A + + S LG F + + + +KG + +
Sbjct: 299 DLAAGKSFAEVAAQYTEDPSGTQTGGELGWFGRGRMVKPFEDAA--FALEKGAVSEPVRT 356
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FG+ + V + K + +++ V DIAN + +A+E +++ + E + +G +D +
Sbjct: 357 QFGFHLITVEDTKSAGYENYESVASDIANIIAEDRAAEILQDRLDQALEMVLVGEPLDAV 416
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + +++ D+ K+ +++ + + +F ++ + + DG Y+
Sbjct: 417 VKAIGLK-LEIRESDYFTKNQGPRDLPGL--SPENAQVLFDLPQDITTQSPLPIADG-YL 472
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
+E + + LE V ++ + + + A++ + E +G+
Sbjct: 473 LATKREQVAESVKPLEAVKAEIVAAITRDEALKVAKAAADKDL-ELLLKGETL------T 525
Query: 525 GASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
GA++ T R N ++ F YV+ K
Sbjct: 526 GATVKETEPFGRQGTINGLGMNQLLATKAFETKSGAWLPEAYAFPEGYVLAKAIQVTPPA 585
Query: 584 VQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV-HDNLIQR 625
+ EK+ +++ L + + + + +A L+++ V + + L++
Sbjct: 586 DEDWAAEKELWLTSLNERAEEQTMQAFVADLRAKADVRITNPALLEN 632
>gi|77360982|ref|YP_340557.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (rotamase D)
[Pseudoalteromonas haloplanktis TAC125]
gi|76875893|emb|CAI87114.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
[Pseudoalteromonas haloplanktis TAC125]
Length = 633
Score = 245 bits (623), Expect = 2e-62, Method: Composition-based stats.
Identities = 120/637 (18%), Positives = 241/637 (37%), Gaps = 31/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ +AK+ L + + F + G+ L + V V K+ + F ++
Sbjct: 1 MLEKIREGSQGPIAKVILGAVILSFALAGIGSYL-GQTTEQPVAEVNGIKISQTEFNRAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E G + Q+ G ++ + + ++D LV Q ++GL V
Sbjct: 60 QNERGRLEQQFGEYFTQIAADPNYMAQIRQGVIDRLVQQELQTQLAAELGLRVSDESVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F F++D ++ + + + ++ K ++R+ +V G
Sbjct: 120 TILELPYFK-IGESFNNDRYLQVIRQMNFQPDSFREYLRKDMTRSQLVSAVAGSDFALKN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+ A + RS+DY+V+N + S + ++E + +PE ++YI
Sbjct: 179 ELESAIALQQQTRSIDYLVVNKEAMQDSVVVSEQEIADYYELNSGQFLSPERLSVNYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------FQSL 290
+ ++ D+++A YE++K +Y PE R V ++ N ++ D A L
Sbjct: 239 KAQDITVA-SVTEDDVKAYYEQSKAQYVEPEKRRVSHILIDNSEDDDAAKAKAESLLAQL 297
Query: 291 KKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+G F +LAE + +G + + + D D+ F+L KGD++ VI FG
Sbjct: 298 NQGADFAELAESSSDDIVSGEMGGDLEWIERDVMDPVFEDAAFALENKGDYSDVIASEFG 357
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
Y I +++++ ++ +VK D+ + + K ++ + + + + +
Sbjct: 358 YHIIKLTDLQAQQVKAYDDVKADLRAELEKAEKVDAFYEKQTEMAALAFEISDRLVDAAE 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ PLV A I + + L + + V
Sbjct: 418 AAGVEIKSTPLVALNELPEPLNSPAVI-----TALTSVDLLEDKVNSELIELGNEHVIVV 472
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ E PA + L +V +K KT+ KA L E + GK+ D+
Sbjct: 473 RVNEHEPAATKALSDVSEQIKASLVNEKTSALAKEKARTLFAE-VQAGKSLNDVAAEQNL 531
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGP 583
++ Q+ R ++Q F + N + + +
Sbjct: 532 TVRQEAQLTRQSYT---VSPAIVTQAFKMAHPTDSAIVELVNLNNGDAAIVALKSVTNAE 588
Query: 584 VQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
V + + +T I LK+Q + +
Sbjct: 589 VADNIDPQIQQNITMAQANKNYMVFIESLKAQAKINL 625
>gi|197284031|ref|YP_002149903.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis HI4320]
gi|194681518|emb|CAR40403.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis HI4320]
Length = 625
Score = 245 bits (623), Expect = 2e-62, Method: Composition-based stats.
Identities = 120/636 (18%), Positives = 251/636 (39%), Gaps = 29/636 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ IR + KI L V+ + F++ G+ LFS SG + V K+ + ++
Sbjct: 1 MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRAQLEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+Q + + +G S + ++ L+ L++ A LDQF +++G+ A ++
Sbjct: 60 QQRRAQLQKDMGDNFASLASSDEGQKMIRQQALNVLINQALLDQFAQELGISAGDQQIRD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF + +V L I+ + + + L + G
Sbjct: 120 AIFALPYFQT-DGKFDNKKYVELLTANNIDADAFAEGIRQNLINQQLRYSIQGTDFALES 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ ++R+V L+ + S+ L ++++ + AP ++SYI
Sbjct: 179 EVKDFAGLMLQSRNVRLASLDIQPFLEKETVSDEELKAFYDQNTSMFIAPAQVKVSYIQL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + I IS+DE++A Y+ N ++ P + LV ++ A EA +LK G F+
Sbjct: 239 EAQKDLSNITISDDEVKAYYDSNISEFTVPGQKKYSLLVLADETAAKEAEDALKNGADFV 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
L +E+ D SLG + + SL +KG + + S GY I +
Sbjct: 299 TLVKEKSIDTFSAKQDGSLGWITIGQELPEL---ANASLTEKGQISQPVKISNGYAIFRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+IKPS F ++K D+ +MR KA + +++ + + D ++ K ++
Sbjct: 356 DDIKPSVVKPFDDIKADLLVKMRENKAIDDFFALQQKVSQAASN--DNDTLATAAKAGNV 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKES 471
+ D+ ++ + + + D+ V L + S V+++
Sbjct: 414 TVINTDWFDENNVPAALNNEKLTQLIFGGSLVDDNGPTGMNSDMVTLGNDSAYIVRVEGY 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
PA + L++V V K K ++ ++++A +L+ + K S
Sbjct: 474 KPASTQPLDKVRDKVITLVKQQKASQAMNAQAQKLLAALKEGKG--EAALKEANISFGEV 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNSKV--GPVQ 585
+ + S +F+ P G V+ ++ + +
Sbjct: 532 ESVVHSSATD-----PIQSAIFAMPKPAEGKKEYGMSNVPGSKVVLIQLDSVTDGKPTAE 586
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ + + M ++ L +++ L+ + + + D
Sbjct: 587 QLEFMTNLYRAQMGEEALQLMLSDLREKAKIEIFDK 622
>gi|126461486|ref|YP_001042600.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacter
sphaeroides ATCC 17029]
gi|126103150|gb|ABN75828.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacter
sphaeroides ATCC 17029]
Length = 621
Score = 245 bits (623), Expect = 2e-62, Method: Composition-based stats.
Identities = 127/628 (20%), Positives = 265/628 (42%), Gaps = 31/628 (4%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
+K V + ++ V +G+++ G STV SVG + + ++ + +QE+
Sbjct: 13 KKKGTQLVFWGLVGLMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTGAYARALQQEMR 69
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ +I V E A++ GLD+++ LV+ A L + IGL RV EI + F
Sbjct: 70 ALGAQINQPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAF 129
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
HG +F + + L + ++E E+ + ++R+ + G GG +++ +
Sbjct: 130 HGPSGQFDRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAY 189
Query: 186 YFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
E RS + + ++ A P++A L W+E + ++ APE KRI+Y +
Sbjct: 190 IAERRSFGLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAA 249
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
+ L+ Y++ ++ PE R VE+LVFP + A EA + L G F L E+G
Sbjct: 250 TLPADEAALRRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERG 309
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
L+DI LG S++ + + D++F+L + G + G + V+ + + F
Sbjct: 310 LELADIDLGDASRDALGGAA--DAVFALTEPG-IAGPVETDLGPALFRVNGVIAAHETPF 366
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
+EV+ D+ + + A + +++++ LA G ++++++ + + D
Sbjct: 367 EEVRDDLLTEYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLDSD 426
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+ G + K T+ L DG + +++ E +P + + EEV
Sbjct: 427 IAGY---------EAFRTAADKLQKDDFPETILLNDGGLLAMRLDEVVPPKLKPFEEVRD 477
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
DV + + + ++++A ++ + ++EG + G + + R +
Sbjct: 478 DVAEAARKDALTKALAARATEI-AKAAEEGTDLGSFG-----PVEDLGPMTRDGFV-EGV 530
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMM 598
+ F + + V ++ + + K + + Q +
Sbjct: 531 PETLVPAAFEMQQGAFRAIEGADFAG--VLRLDAVEPAAADDEAAKALKASLSAQIEQAL 588
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++D L L + +T++D I
Sbjct: 589 SQDALALFSNSLMQEAGITLNDAAISAV 616
>gi|227358098|ref|ZP_03842440.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis ATCC
29906]
gi|227161833|gb|EEI46865.1| peptidyl-prolyl cis-trans isomerase D [Proteus mirabilis ATCC
29906]
Length = 625
Score = 245 bits (623), Expect = 2e-62, Method: Composition-based stats.
Identities = 116/633 (18%), Positives = 248/633 (39%), Gaps = 23/633 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ IR + KI L V+ + F++ G+ LFS SG + V K+ + ++
Sbjct: 1 MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRAQLEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+Q + + +G S + ++ L+ L++ A LDQF +++G+ A ++
Sbjct: 60 QQRRAQLQKDMGDNFASLASSDEGQKMIRQQALNVLINQALLDQFAQELGISAGDQQIRD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF + +V L I+ + + + L + G
Sbjct: 120 AIFALPYFQT-DGKFDNKKYVELLTANNIDADAFAEGIRQNLINQQLRYSIQGTDFALES 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ ++R+V L+ + S+ L ++++ + AP ++SYI
Sbjct: 179 EVKDFAGLMLQSRNVRLASLDIQPFLEKETVSDEELKAFYDQNTSMFIAPAQVKVSYIQL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + I IS+DE++A Y+ N ++ P + LV ++ A EA +LK G F+
Sbjct: 239 EAQKDLSNITISDDEVKAYYDSNISEFTVPGQKKYSLLVLADETAAKEAEDALKNGADFV 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
L +E+ L + + SL +KG + + S GY I + ++
Sbjct: 299 TLVKEKSIDTFSAKQNGSLGWITIGQELPELANASLTEKGQISQPVKISNGYAIFRLDDM 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KPS F ++K D+ +MR KA + +++ + + D ++ K ++ +
Sbjct: 359 KPSVVKPFDDIKADLLVKMRENKAIDDFFALQQKVSQAASN--DNDTLATAAKAGNVTVI 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKESIPA 474
D+ ++ + + + D+ V L + S V+++ PA
Sbjct: 417 NTDWFDENNVPAALNNEKLTQLIFGGSLVDDNGPTGMNSDMVTLGNDSAYIVRVEGYKPA 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ L++V V K K ++ ++++A +L+ + K S +
Sbjct: 477 STQPLDKVRDKVITLVKQQKASQAMNAQAQKLLAALKEGKG--EAALKEANISFGEVESV 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNSKV--GPVQEKD 588
+ S +F+ P G V+ ++ + ++ +
Sbjct: 535 VHSSATD-----PIQSAIFAMPKPAEGKKEYGMSNVPGSKVVLIQLDSVTDGKPTAEQLE 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ M ++ L +++ L+ + + + D
Sbjct: 590 FMTNLYRAQMGEEALQLMLSDLREKAKIEIFDK 622
>gi|262166048|ref|ZP_06033785.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus VM223]
gi|262025764|gb|EEY44432.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus VM223]
Length = 619
Score = 245 bits (623), Expect = 2e-62, Method: Composition-based stats.
Identities = 113/631 (17%), Positives = 245/631 (38%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + KF +++ + L R G + ++ K L R ++ G
Sbjct: 120 MILEMPQFQSQG-KFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ +I I ++ Q Y ++ +KY S E R V ++ E L G
Sbjct: 239 SADALKAEIAIDDEAAQQYYHEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +A+E+ + SLG ++ + D + + ++L +KG + ++ FGY I
Sbjct: 299 FTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ ++K + EV + I ++ +A + LE+ + + + K +
Sbjct: 358 RLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + +A +P Q L K+D L+ + + + V+++ES
Sbjct: 416 SAKVEHTDFISAEQAPDLLA-VPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEES 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV V + +K ++ N++V D+ G +
Sbjct: 474 RPETVLPLQEVKNQVVEQLSQLKGEQQALELGNKIVAALKAGNS---DVLAENGVAFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
I+R + V+S + VV ++ +
Sbjct: 531 QMIDRSSP--------LANTVYSMVKPQDGAKGYAQAKDFDGNVVVIELDKVESKVTPAY 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + L+++ ++ L VI+ L+ +
Sbjct: 583 HEQIATQLSRIGSQQDLAGVISVLRQSADIE 613
>gi|146307082|ref|YP_001187547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
mendocina ymp]
gi|145575283|gb|ABP84815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
mendocina ymp]
Length = 615
Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats.
Identities = 85/633 (13%), Positives = 211/633 (33%), Gaps = 36/633 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR SR W+AKI + ++ + G + S + V + + +
Sbjct: 1 MLQNIRDNSRGWIAKIIIGLIVMLMAFTGFEAIVTGTSNRNNAAEVNGDTITLNELNTAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + Q++G ++ L + L L+ L Q D + I
Sbjct: 61 EMQRRQLLQQLGRDFDASLLDDKLLREASLKGLIERKLLLQAAGDADFAFSQAALDQVIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D +F F + + G + ++ + + + +
Sbjct: 121 QTPEFQV-DGRFDAARFDQVIRQMGYSRLQFRQMLEEEMLIGQLRAGLGASSFVTEQDAR 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
++ D+ + + PA + +++ + +++++ + +PE + Y+
Sbjct: 180 AFANLE--RQTRDFASVTIKADPAAVELADSDVQAYYDEHASEFMSPEQVVLEYVELHKD 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---QKEADEAFQSLKKGKKFI 297
+IE+S+D+LQ YE + + + + +E + G+ F
Sbjct: 238 SFFDQIEVSDDDLQPLYESEIANLAEQRQAAHILIEGDDAAARTKIEEIKARVDAGEDFA 297
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E + LG + D + +++ + G + + FG+ + +
Sbjct: 298 ALAKEFSEDPGSAADGGDLGYAGPG-VYDPAFEEAL-YALQTGQVSEPVRSDFGWHLIKL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
++ SF +K +A + + ++ E K+LE+ + + + ++ +
Sbjct: 356 LGVQAPEVPSFDSLKDKLARDFKAQQVEQRFVEATKQLEDAAFEASDLAQPAQELGLELK 415
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
G G + + + T+ L + + V+ KE
Sbjct: 416 VSEAFGREG----GATGITANRQVLQAAFSPEVLEDGTNSSTIELDPSTVVVVRAKEHRK 471
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
LE+V ++ + + ++ +L+ ++ GA+
Sbjct: 472 PEQLPLEQVAESIRAHLLQERASAAAKAEGEKLLAAARAG--------ESEGANWQVQEA 523
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPI-----ENGLSYVVFKVTNSKVGPV---- 584
R + +F P N YVV ++
Sbjct: 524 ATRSQ---DGVEPKVLQALFRMSKPTTAGEPSYAGVTLNNGDYVVLRLDGVNAPDEALTS 580
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+E + ++L + ++ L+++ +
Sbjct: 581 EELAMYRNFLASRAGQQDFAALRKQLEAKADIE 613
>gi|288941155|ref|YP_003443395.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium
vinosum DSM 180]
gi|288896527|gb|ADC62363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Allochromatium
vinosum DSM 180]
Length = 645
Score = 244 bits (621), Expect = 4e-62, Method: Composition-based stats.
Identities = 114/646 (17%), Positives = 244/646 (37%), Gaps = 41/646 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR+ ++ W+A ++++ +PF +WG+ L V G +V ++P
Sbjct: 1 MLQTIRERAQGWIAWAIVILISIPFALWGIQSYL-GVGGEPIAATVNGVEIPARELDRRV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + +++G + L ++L+ L+ A L + +GL V +I
Sbjct: 60 QETRFELRERLGAAYDPAAFDDQRLRAEVLETLIQEALLMDVVGRLGLRVSDQEVQMQIL 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + +F D + L +G+ Y + +S T ++ + LD
Sbjct: 120 SDPAFVSEG-RFDKDTYERLLRFQGLTPAMYEAQLRQKMSATQLIRAVSSSELATRAELD 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
KR + R + Y+ L A +T +++ + +++PE R+ Y++ D
Sbjct: 179 TYKRLMGQKREISYLRLPLAEHRTDEPIDEARITAYYDSNRARFQSPEQVRLDYLVLDTD 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ------------KEADEAFQ 288
K+E+S ++L+ Y ++ ++ PE R V L+ E
Sbjct: 239 ALSSKVEVSEEDLRQLYASDQARFAQPERREVRHLLLKVDADADEAAARAVLDEIQAIRA 298
Query: 289 SLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
++ G+ F +LA ++ G + SLG + D K G+ + +
Sbjct: 299 RIQAGESFEELAKTLSQDPGSAAKGGSLGVIESGIMVPA--FDQAAFALKTGELSEPVRT 356
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FGY + V I PS F++V++ + ++ +A E +RL +
Sbjct: 357 PFGYHLIEVVQILPSKAKPFEDVREPLRAELAKQRAEGLFYELAERLANISYESPDSLDP 416
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-SY 463
+ + + + D+ G++ + + + P F + D D
Sbjct: 417 AAE--ALGLTIQHSDWIGRNGGDEGLLSHPKVMAAAFSEDVLVGGNNSDLIEPERDRLQA 474
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ +++ E A + L+EV ++ + + S A L + ++G + G+
Sbjct: 475 IVLRVAEHREASVKPLDEVREEIVAAIRDEQARAAAKSAAEALAEKL-RDGSGWSVAGEE 533
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNS 579
+ ++R E + F PV + + VV ++T
Sbjct: 534 --LKPESPGLVSRQSAE---VPAGVLDAAFKLPVPTDGAVSVGTAILDDSDAVVVRLTKV 588
Query: 580 KVGPVQEK--------DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ G V+ +TQ+M + +V+ ++S+ +
Sbjct: 589 EDGQVEADGEGGEDGFSAESFIITQIMGRQAYTNVLEDMESRAKIE 634
>gi|326622155|gb|EGE28500.1| peptidylprolyl isomerase [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 611
Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats.
Identities = 115/612 (18%), Positives = 251/612 (41%), Gaps = 28/612 (4%)
Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS---ERARSV 83
+ G+S L S + V Q + + F N++ E + Q++G +
Sbjct: 15 LTGVSGYLIGGSN-NYAAKVNGQGISRAQFENAFNNERNRMQQQLGDRYSELAANEGYMK 73
Query: 84 GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
L +++L+ L+ A LDQ+ ++ L +V I +P F D KF ++ + + + +
Sbjct: 74 SLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQV-DGKFDNNRYNAIVNQ 132
Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
G+ +Y L+ ++ G D+ + R V V++ +
Sbjct: 133 MGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALA 192
Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
A ++ ++ ++++ K + PE R+SYI D + +S+ ++QA Y+++ ++
Sbjct: 193 AKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKLDAATMQA--PVSDADIQAYYDQHVDQ 250
Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEY 319
+ PE + + +A +L KG+ F LA+E+ + +G +
Sbjct: 251 FTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESA 310
Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
L ++ L +KG + VI S G+++A + +I+P+ EV+ DIA +++ K
Sbjct: 311 TV-PELKNAG--LKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEK 367
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
A + +++ + + + ++ E++ + + +D +E+ P + +
Sbjct: 368 ALDAYYALQQKVSDAASN--DNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAI 425
Query: 440 LFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
V P + + V++ E P + L EV V K K +
Sbjct: 426 FNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQ 485
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ A +L++E K GK + K G S ++R + + S P
Sbjct: 486 QAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSLPT 539
Query: 558 EMVKCFPIENG--LSYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ + + N + V+ K G P +K + +TQ + + +++++ L+ +
Sbjct: 540 KDKPVYGVANDMQGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKE 599
Query: 614 YSVTVHDNLIQR 625
+ + D L Q+
Sbjct: 600 AKIKIGDALEQQ 611
>gi|332701510|ref|ZP_08421598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
africanus str. Walvis Bay]
gi|332551659|gb|EGJ48703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
africanus str. Walvis Bay]
Length = 631
Score = 243 bits (619), Expect = 6e-62, Method: Composition-based stats.
Identities = 119/645 (18%), Positives = 236/645 (36%), Gaps = 35/645 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR+ +R+W KI ++ + F+ WG+ F S V V V + + +
Sbjct: 1 MLDPIRQNARSWGVKIVFGIIIIVFVFWGVGS--FRNQNGSVVGYVNDTPVNVTEYRQAL 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + +++E + +GL +++ +V + Q +D G+ V I
Sbjct: 59 ERATEQLRSRF-PDLDAEMLKQLGLRRQVFSQIVDAELVRQKAKDTGMVVSDEEVREIIR 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P F F ++++ L G+ E Y L + + + S
Sbjct: 118 STPAFQSDRGGFDYELYRRLLRANGLTEVSYEAGMRTELLLDKMRQVATLPAKASEQEAR 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
F + V Y + A A PS + ++E+ K + P RISY+LF
Sbjct: 178 DHFAFARDTAVVRYALFPLEDFTAQASPSEEEIAGYYEQNKARFTLPAQARISYLLFSAE 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQKEADEAFQ 288
+ + ++ +E++ YE + +K+ E + V + + ++ +
Sbjct: 238 QMARPEQVPAEEVRQYYEAHADKFQRQEEVRASHILVKVAKDAPQEEVDTAKAKIEDIRK 297
Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
+ F A++ + LG F + + + K G + +
Sbjct: 298 KITGSLSFADAAKKFSEGPSGPAGGDLGWFGRGRMVPTFEQAA--FALKPGQVSAPVRTE 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ I + + + EV+ DI ++ A+ V + E A G S+ EI+
Sbjct: 356 FGWHIIKLEERREPGQIPLAEVESDIRAELARDTAASLVGDALDEATELAAAGQSLAEIA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ +V D +G + A I ++ +F D D V+ +G Y+
Sbjct: 416 KSLHMVPRD------SGMFSESAGPAGIGLNDEAKRVIFSLADGELTDTPVSSGNG-YIL 468
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ S P + L+EV ++ K K E +KA L + R+
Sbjct: 469 AEKAGSKPESVKPLDEVRVQIETLLKRDKALELSKAKAQALAKQL--ADPAAREQAAASL 526
Query: 526 ASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
L T+ +R D F + + V K+ P
Sbjct: 527 PELKTSEPFDRKGTVPDLGANQDLAKDAFVAKSGEWLPGAYSSPKGWYVAKLDALIPAPE 586
Query: 585 QE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV-HDNLIQ 624
E KD +++ LTQ ++L + I L+S+ + + + ++
Sbjct: 587 SEWQSQKDMWVAALTQSREQELYQAFIESLRSEAKIEIVNPQYLE 631
>gi|254284340|ref|ZP_04959308.1| putative peptidyl-prolyl cis-trans isomerase D [gamma
proteobacterium NOR51-B]
gi|219680543|gb|EED36892.1| putative peptidyl-prolyl cis-trans isomerase D [gamma
proteobacterium NOR51-B]
Length = 620
Score = 243 bits (618), Expect = 8e-62, Method: Composition-based stats.
Identities = 94/634 (14%), Positives = 216/634 (34%), Gaps = 35/634 (5%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R+ +++ AKI + ++ + F +GL L SG+ +V V +++ + N+ +
Sbjct: 1 MREGAKSTAAKIVIGLIVLSFAAFGLESLLPGGSGT-SVAEVNGEEISPAELQNAIASQK 59
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
++Q G ++ + L+ L+ L Q D+G+ A + EI
Sbjct: 60 RQLTQIFGDRIDPAMLDDERIRPSALEGLIERKLLLQHAVDLGMIASAQAIGEEITAIEA 119
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
F +D FS D + S LA G+ + + ++ L + + G S ++ A +
Sbjct: 120 FQ-RDGVFSPDQYKSVLANAGLTPERFRRMQSQDLMLSQLQGAISQSAFVSPSEMEAAAK 178
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
+ E R V Y+ A + ++++ +D + + + ++
Sbjct: 179 VWAEERDVRYLEAPLSDFDRPDSVDEAEIAEYYDNNQDRFVTEP--AANVGYILLAVEDF 236
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD---------EAFQSLKKGKK 295
+ ++ ++E +++Y + V ++ E E + L G+
Sbjct: 237 YEPVDEALVREQFEAVRDEYEVADQSRVSHILIIESDEDSDTSYADRVGEVARRLDAGED 296
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F QLA E + S LG P+ + + G ++ + G
Sbjct: 297 FGQLAMELSDDVGSAGSGGELGFTDGTAFPEP--MEEAIASLSVGAYSGPVETDAGTHFI 354
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
V F +++++ ++I+ A + L++ + +
Sbjct: 355 RVEERVAGERPDFATLREELEQAIKISNAERDLLLAVDELKDLTFNAPDLIGPAEALGFS 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + + + + + L D ++ V++ E
Sbjct: 415 VAEEEELTRS-----NGVGVWADERVVDTVFSEEVYRGGNNSEVLELADSQFLVVRVNEQ 469
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
IPAR + L++V ++ KT + ++V + G+ I LG
Sbjct: 470 IPARQKPLQDVAGEIAAQLKTE-ARTAALTDFTEMVSQRLAAGETLEAIANELGYEWRVE 528
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVG-----PV 584
R + + +S F + G + V ++ + G P
Sbjct: 529 LAAQRNNTS---LPREVLSTAFVMSDADSSAVELVELPGETIAVVQLARIREGDLQRMPN 585
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+++ L + L + L+ + + V
Sbjct: 586 NAREQLQRQLASAGARIDLAEYVRALRQEAEIVV 619
>gi|229523938|ref|ZP_04413343.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae bv.
albensis VL426]
gi|229337519|gb|EEO02536.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae bv.
albensis VL426]
Length = 619
Score = 243 bits (618), Expect = 8e-62, Method: Composition-based stats.
Identities = 118/627 (18%), Positives = 245/627 (39%), Gaps = 24/627 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ + A K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + F + + L R G + Y ++ K L R ++ G
Sbjct: 120 LILEIPQFQSQG-VFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++ + + Q Y+++ +KY + E R V ++ E L G
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + SLG + + D + + F+L +KG + ++ FGY I
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +IK EV++ I ++ +A + LE+ + + + K +
Sbjct: 358 RLDDIKAPVVKPCSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + + + P Q L K+D L+ + + + V+++E
Sbjct: 416 SATVVHTDFISAEQAPEVLTT-PAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEEF 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV + V + +K ++ NQLV K G+ D+ G S
Sbjct: 474 RPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590
I+R Q E V + + VV +++ + ++
Sbjct: 531 QMIDRSSPLANTVYAMVKPQ----EGEKVYAQAKDFDGNIVVIELSKVESKLTPAYHEQI 586
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L ++ ++ L VI+ L+ +
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613
>gi|332557437|ref|ZP_08411759.1| putative peptidyl-prolyl cis-trans isomerase [Rhodobacter
sphaeroides WS8N]
gi|332275149|gb|EGJ20464.1| putative peptidyl-prolyl cis-trans isomerase [Rhodobacter
sphaeroides WS8N]
Length = 621
Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats.
Identities = 125/628 (19%), Positives = 264/628 (42%), Gaps = 31/628 (4%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
+K V + ++ V +G+++ G STV SVG + + ++ + +QE+
Sbjct: 13 KKKGTQLVFWGLVGLMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTGAYARALQQEMR 69
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ +I V E A++ GLD+++ LV+ A L + IGL RV EI + F
Sbjct: 70 ALGAQINQPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAF 129
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
HG +F + + L + ++E E+ + ++R+ + G GG +++ +
Sbjct: 130 HGPSGQFDRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAY 189
Query: 186 YFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
E RS + + ++ A P++A L W+E + ++ APE KRI+Y +
Sbjct: 190 IAERRSFGLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAA 249
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
+ L+ Y++ ++ PE R VE+LVFP + A EA + L G F L E+G
Sbjct: 250 TLPADEAALRRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERG 309
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
L+DI LG S++ + + D++F+L + G + G + V+ + + F
Sbjct: 310 LELADIDLGDASRDALGGAA--DAVFALTEPG-IAGPVETDLGPALFRVNGVIAAHETPF 366
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
+EV+ D+ + + A + +++++ LA G ++++++ + + D
Sbjct: 367 EEVRDDLLTEYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLDSD 426
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+ G + K T+ L DG + +++ E + + + +EV
Sbjct: 427 IAGY---------EAFRTAADKLQKDDFPETILLNDGGLLAMRLDEVVAPQLKPFDEVRD 477
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
DV + + + ++++A ++ + ++EG + G + + R +
Sbjct: 478 DVAEAARKDALTKALAARATEI-AKAAEEGTDLGSFG-----PVEDLGPMTRDGFV-EGV 530
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMM 598
+ F + + V ++ + + K + + Q +
Sbjct: 531 PETLVPAAFEMQQGAFRAIEGADFAG--VLRLDAVEPAAADDEAAKALKASLSAQIEQAL 588
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++D L L + +T++D I
Sbjct: 589 SQDALALFSNSLMQEAGITLNDAAISAV 616
>gi|77462552|ref|YP_352056.1| peptidyl-prolyl cis-trans isomerse [Rhodobacter sphaeroides 2.4.1]
gi|4185543|gb|AAD09115.1| YbaU [Rhodobacter sphaeroides]
gi|77386970|gb|ABA78155.1| possible peptidyl-prolyl cis-trans isomerse [Rhodobacter
sphaeroides 2.4.1]
Length = 621
Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats.
Identities = 126/628 (20%), Positives = 264/628 (42%), Gaps = 31/628 (4%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
+K V + ++ V +G+++ G STV SVG + + ++ + +QE+
Sbjct: 13 KKKGTQLVFWGLVGLMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTGAYARALQQEMR 69
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ +I V E A++ GLD+++ LV+ A L + IGL RV EI + F
Sbjct: 70 ALGAQINQPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAF 129
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
HG +F + + L + ++E E+ + ++R+ + G GG +++ +
Sbjct: 130 HGPSGQFDRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVNTLHAY 189
Query: 186 YFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
E RS + + ++ A P++A L W+E + ++ APE KRI+Y +
Sbjct: 190 IAERRSFGLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAA 249
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
+ L+ Y++ ++ PE R VE+LVFP + A EA + L G F L E+G
Sbjct: 250 TLPADEAALRRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERG 309
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
L+DI LG S++ + + D++F+L + G + G + V+ + + F
Sbjct: 310 LELADIDLGDASRDALGGAA--DAVFALTEPG-IAGPVETDLGPALFRVNGVIAAHETPF 366
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
+EV+ D+ + + A + +++++ LA G ++++++ + + D
Sbjct: 367 EEVRDDLLTEYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMEIATVDYAPGLDSD 426
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+ G + K T+ L DG + +++ E + + + EEV
Sbjct: 427 IAGY---------EAFRTAADKLQKDDFPETILLNDGGLLAMRLDEVVAPKLKPFEEVRD 477
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
DV + + + ++++A ++ + ++EG + G + + R +
Sbjct: 478 DVAEAARKDALTKALAARATEI-AKAAEEGTDLGSFG-----PVEDLGPMTRDGFV-EGV 530
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMM 598
+ F + + V ++ + + K + + Q +
Sbjct: 531 PETLVPAAFEMQQGAFRAIEGADFAG--VLRLDAVEPAAADDEAARALKASLSAQIEQAL 588
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++D L L + +T++D I
Sbjct: 589 SQDALALFSNSLMQEAGITLNDAAISAV 616
>gi|78356452|ref|YP_387901.1| peptidyl-prolyl cis-trans isomerse domain-containing protein
[Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
gi|78218857|gb|ABB38206.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 629
Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats.
Identities = 117/645 (18%), Positives = 236/645 (36%), Gaps = 37/645 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR+ +++W KI ++ + F+ WG+ S+ V VG+ + ++F +
Sbjct: 1 MLDSIRQNAQSWGVKIAFGLIIIVFVFWGVGS--MDNQPSNVVAKVGKTSITVNAFAREY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ ++ + V SE + GL ++L+ ++S L Q E GLE + IA
Sbjct: 59 EQQVELVRAQF-PDVTSEDLKQAGLKMRVLNQMISEVLLVQQAEKQGLEVSPAELKLRIA 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P+F+ D F + + LA +G Y D + + + +
Sbjct: 118 EIPVFNDADGNFDGERYKQVLAAQGTTPGAYEDKIRRSMLAQKMRDFITMPAAVTAEEAK 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E RS+DY++ + P ++ ++++ +NY+ P + Y++
Sbjct: 178 AMFLYSAERRSMDYVLFAAENYLDQVKPGEEQISAFYKQNIENYKVPPRVTLQYVMITPA 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV---------------FPNQKEADE 285
+S+D + A YE NKE + E ++ E E
Sbjct: 238 ALADGASVSDDRIAAYYEDNKESFRQEERVHARHILVLADAGASEEKVAAAEKKINELYE 297
Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
+ K + A E + LG F + + + A G T +
Sbjct: 298 RIRKGADFAKVAKEASEGPSAPLGGDLGWFGRGQMVPE--FEQAAFAAAAGQVTAPVRTQ 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ I V + + + EV +I++++ A EKV E L G + ++
Sbjct: 356 FGFHIIKVEEKENARIRTLDEVHDEISHRLAEEAALEKVTPTLDAALEALLAGEDLPAVA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
R + D A + + + + +F + D + + +G YM
Sbjct: 416 ERMHLSLRDSGQFTRA------QATGLLGVEPASVELIFTTPEGSVIDTPMEV-EGGYML 468
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++ S R+L+ V DV K + + + A + V +G +
Sbjct: 469 AKVVSSKEETYRELDVVKADVIARLKQQEAMKLAADAAREAVAALKNDGSLPQSAAA--- 525
Query: 526 ASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
+ + R D S +F + + VV K
Sbjct: 526 -RVKRSEPFGRQGFIPGVGQAPDVTSAIFKAADDAWIAEAFQTPTGAVVAKRAAVLTPDE 584
Query: 585 QE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT-VHDNLIQ 624
+ KD+F+ + Q ++L + + L ++ V V++ +++
Sbjct: 585 TQWAQVKDRFVDAMLQSKREELYRAYMQDLLTKTKVELVNNKILE 629
>gi|197105219|ref|YP_002130596.1| rotamase family protein [Phenylobacterium zucineum HLK1]
gi|196478639|gb|ACG78167.1| rotamase family protein [Phenylobacterium zucineum HLK1]
Length = 638
Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats.
Identities = 126/636 (19%), Positives = 270/636 (42%), Gaps = 16/636 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML IR+ +++WVA + + +L V F ++G++D +FS + V+ G + V + F +
Sbjct: 1 MLAAIRQFAKSWVAAVLIGLLIVSFAVFGIND-VFSGATGDQVIKAGSRVVTSAEFRREY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q+ G + E A + G+D+++L+ L + + + IG+ + EI+
Sbjct: 60 EDYRKRLEQQAGQPITPEMAEANGIDRQVLNGLATREAFAEMLHKIGIRPSDKLLVAEIS 119
Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ P F +F + F RLA + + + ++ G+R
Sbjct: 120 KIPAFFDPISGRFDRNTFQQRLAENDMTPEGFDRALRDQMAAQHWGAGVGEGLRAPRAYG 179
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
F E+R V + + +VPA+A P++ LT + ++ + PE + ++ + F
Sbjct: 180 ALGAIFGLESRDVAWFNVTAANVPAVAAPTDEQLTAFMKENAEQLTRPEMRVLTVVRFTP 239
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ + EL+ YE K+ + PE RT+ Q+ + A + L +G +
Sbjct: 240 QAVPQNTPVDEAELKKLYEFRKDTFSRPETRTLVQIPAKDAAAAQQIQAGLARGDDPAAV 299
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
A+ G + I+ K + D +AD F L G G + V ++ P
Sbjct: 300 AKAAGVDV--ITYEDKPKTALADRRVADVAFGLQPGQV--ARAQGELGLAVVKVISVTPG 355
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
TV+ +E + + ++R A++KV E + +E G + +++ + ++ + V
Sbjct: 356 QTVTLEEARPVLEAELRKNAAAQKVYEQAEAYDEAHRGGADLAAAAQQVGVPAMTVGPVT 415
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
G D +G+ V + +L + F D T +G V+++ +P L
Sbjct: 416 RQGVDEQGRPVPGL--TPAILEQAFSLPAGGEGDLT-DAGEGESFAVKVERVVPPAMPPL 472
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
EV T++ + W +TA + ++AN+L E ++G++ + + + ++R
Sbjct: 473 AEVRTELARVWSARETARRMEARANEL-AERVRKGESLEAVAASASLKVSRAEGLSRQTA 531
Query: 540 -ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYL 594
++ + +++ F + V ++ V KV+N + ++ +
Sbjct: 532 GQDPALSGELLNRAFGARPDDVIVGRARE-FAFSVAKVSNIRMQPGPTAAMLTEQQRGEM 590
Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
T + +++ D+ + + V V N + + E
Sbjct: 591 TNTLFREIADAAQRAARDKLKVRVDVNRARAAVGFE 626
>gi|258625370|ref|ZP_05720267.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM603]
gi|258582361|gb|EEW07213.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM603]
Length = 619
Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 115/631 (18%), Positives = 247/631 (39%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + KF +++ + L R G + ++ K L R ++ G
Sbjct: 120 MILEMPQFQSQG-KFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ +I I ++ Q Y+++ +KY S E R V ++ E L G
Sbjct: 239 SADALKAEISIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +A+E+ + SLG ++ + D + + ++L +KG + ++ FGY I
Sbjct: 299 FTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ ++K + EV + I ++ +A + LE+ + + + K +
Sbjct: 358 RLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF D +A +P Q L K+D L+ + + + V+++ES
Sbjct: 416 SAKVEHTDFISADQAPDLLA-VPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEES 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV T V + +K ++ N++V D+ G +
Sbjct: 474 RPETVLPLQEVKTQVVEQLSQLKGEQQALELGNKIVTALKAGNS---DVLAENGVAFGEV 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
I+R + V+S + VV ++ +
Sbjct: 531 QMIDRSSP--------LANTVYSMVKPQDGAKGYAQAKDFDGNVVVIELDKVESKVTPAY 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + L+++ ++ L VI+ L+ +
Sbjct: 583 HEQIATQLSRIGSQQDLAGVISVLRQSTDIE 613
>gi|261210559|ref|ZP_05924852.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC341]
gi|260840344|gb|EEX66915.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio sp. RC341]
Length = 619
Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 110/627 (17%), Positives = 248/627 (39%), Gaps = 24/627 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + K+ L ++ + F+ G+ + L S +T VG+ ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKVILGLIILSFIFAGVGNYLISGGN-NTAAKVGKAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDQQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F +++ + L R G + ++ K L R ++ G
Sbjct: 120 MILEMPQFQSQG-QFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMSALQGSEFSLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLADFAKKVTLSDDDIQQYYKANTERFTRPEQMKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSLKKGKK 295
+K+I I ++ Q Y+++ +KY + E R V ++ ++++A L G
Sbjct: 239 SADALKKQIMIDDEAAQEYYQEHLDKYSTAEQRKVSHILVEGSDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +A+E+ + SLG ++ + D + + F+L + G + ++ FGY I
Sbjct: 299 FATVAKEKSQDVGSAQEGGSLGWIERDTM-DPAFEAAAFALTENGQISGLVKSEFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K + EV + I ++ +A + LE+ + + + K +
Sbjct: 358 RLDEVKAPVVKPYSEVVEAIKQELIDQQALDTFYAKQSELEKLAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + + +A + + + + + + + V+++ES
Sbjct: 416 SATVEHTDFISAEQAPELLATPAVLQ--VLKTPEVKEDGLNSEVIEVAPEHVVVVRVEES 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P LEEV V + +K ++ NQLV K G+ D+ G +
Sbjct: 474 RPETVLPLEEVKPQVVEQLSRMKGEQQALELGNQLVASL-KSGET--DVLAENGVAFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590
I+R Q + + VV ++ + ++
Sbjct: 531 QMIDRSSPLANTVYAMVKPQ----DGAKGYAQAKDFDGNVVVIELDKVESKVTPAYHEQI 586
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L+++ ++ L VI+ L+ +
Sbjct: 587 ATQLSRIGSQQDLAGVISVLRQNTEIE 613
>gi|254286721|ref|ZP_04961675.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae AM-19226]
gi|150423148|gb|EDN15095.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae AM-19226]
Length = 619
Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 119/627 (18%), Positives = 246/627 (39%), Gaps = 24/627 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ + A K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + F + + L R G + Y ++ K L R ++ G +
Sbjct: 120 LILEIPQFQSQG-VFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ K+ + + Q Y+++ +KY + E R V ++ E L G
Sbjct: 239 SADGLKAKVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + SLG + + D + + F+L +KG + ++ FGY I
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +IK + EV++ I ++ +A + LE+ + + + K +
Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + + + P Q L K+D L+ + + + V+++E
Sbjct: 416 SATVVHTDFISAEQAPEVLTT-PAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEEF 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV + V + +K ++ NQLV K G+ D+ G S
Sbjct: 474 RPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590
I+R Q E V + + VV ++ + ++
Sbjct: 531 QMIDRSSPLANTVYAMVKPQ----EGEKVYAQAKDFDGNIVVIELNKVESKLTPAYHEQI 586
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L ++ ++ L VI+ L+ +
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613
>gi|59711407|ref|YP_204183.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Vibrio fischeri
ES114]
gi|59479508|gb|AAW85295.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Vibrio fischeri
ES114]
Length = 618
Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 110/626 (17%), Positives = 238/626 (38%), Gaps = 23/626 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ IR+ S KI L ++ F+ G+ L G VG +++ + F +
Sbjct: 1 MMDRIREGSTGLAVKIILGLIIFSFVFAGVGSYLV-GGGQPLAAKVGEREITRNEFEQVY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + + A K +LD +V+ A LD +D+GL ++
Sbjct: 60 QNERNRMQSQLGEYFATLLGDPAYVEQFRKSVLDRMVNDALLDNQAQDLGLRISDDQIRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F KD KF +++ L R G + + + + L+R +V +
Sbjct: 120 TILSMPQFQ-KDGKFDEEIYNISLRRAGFSSDSFAAYLRQDLARNQLVMALESTEFTLSN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R + I LN A ++ +T+++ K + PE ++SY+
Sbjct: 179 EVQAQAALETQQREIRTITLNTADFAKNAKVTDEEITEYYNANKQQFVRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-VFPNQKEADEAFQSLKKGKKF 296
+ + + I++ E++ Y+ N +KY + E R V + + ++ +A + + G+ F
Sbjct: 239 SGNSLKAQAPITDKEIEEYYQANLDKYSTQEKREVSHILIKGDEADAQKVLDRINNGEDF 298
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A++ + SLG + + D D+ F LAK GD + ++ +FG+ I
Sbjct: 299 ATVAKDASQDIPTAKEGGSLGWIERG-VIDPEFEDAAFQLAKVGDHSGIVKSAFGFHIIQ 357
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
++ I+ T EV DI + + A++ L E + + V
Sbjct: 358 LNGIEEPTTKPLAEVSADIKSFLVDEHAADAFYSLQTELAEKAFESPDSLDDAAE--AVD 415
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ DF + K +A + + + + + + V++++
Sbjct: 416 AKIVTSDFFSQADAPKALADSAVLQAIYS--PEVKEDGLNSDVIEIAPEHVIVVRVEDVR 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
L+EV V + +E A ++ +K + + N G +
Sbjct: 474 DEMVLPLDEVKDAVIARLSQAQGEQEALELAQNVISGLNKGDNS---VMANNGLAFAEAR 530
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS-KVGPVQEKDKFI 591
I+R D + ++ ++V+ + + ++ +
Sbjct: 531 MISRNDELANDVYRLEKPA----DGKSTYAQVMDRQGNHVIVALDSVLELNDSNMSSQIA 586
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L + + L + + LK ++
Sbjct: 587 TGLLRSQTQQDLTATLDTLKESTEIS 612
>gi|258621306|ref|ZP_05716340.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM573]
gi|258586694|gb|EEW11409.1| peptidyl-prolyl cis-trans isomerse D [Vibrio mimicus VM573]
Length = 619
Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 113/631 (17%), Positives = 247/631 (39%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDDQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + KF +++ + L R G + ++ K L R ++ G
Sbjct: 120 MILEMPQFQSQG-KFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + + L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTLTLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ +I I ++ Q Y+++ +KY S E R V ++ E L G
Sbjct: 239 SADALKAEIAIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +A+E+ + SLG ++ + D + + ++L +KG + ++ FGY I
Sbjct: 299 FTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ ++K + EV + I ++ +A + LE+ + + + K +
Sbjct: 358 RLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + +A +P Q L K+D L+ + + + V+++ES
Sbjct: 416 SAKVEHTDFISAEQAPDLLA-VPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEES 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV T V + +K ++ N++V D+ G +
Sbjct: 474 RPETVLPLQEVKTQVVEQLSQLKGEQQALELGNKIVTALKAGNS---DVLAENGVAFGEV 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
I+R + V+S + VV ++ +
Sbjct: 531 QMIDRSSP--------LANTVYSMVKPQDGAKGYAQAKDFDGNVVVIELDKVESKVTPAY 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + L+++ ++ L VI+ L+ +
Sbjct: 583 HEQIATQLSRIGSQQDLAGVISVLRQSTDIE 613
>gi|167646732|ref|YP_001684395.1| rotamase family protein [Caulobacter sp. K31]
gi|167349162|gb|ABZ71897.1| rotamase family protein [Caulobacter sp. K31]
Length = 655
Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 119/641 (18%), Positives = 250/641 (39%), Gaps = 23/641 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML R +++ +A + +L V F ++G+SD G + G + + F +
Sbjct: 1 MLAGFRSFAKSPLAVVLFGLLIVSFAVFGISDVFRHPPGKWVIA-AGSRDTTPADFKARF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH----GRVW 116
+ + G + + A G+D+++L L +L + I +G+ +
Sbjct: 60 ESYRKQQQAQ-GQTLTPDLAVEHGVDRQMLTQLALQESLAELIRKMGVRPSDKLVGDTLR 118
Query: 117 GEIARSPL----FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
++A P F + KF ++ + LA+ + Y +++ + +
Sbjct: 119 EQLASLPPGQRPFDPINGKFDSKMYAALLAQNDLTPARYEASLRDEIAQAHLFSAVATSL 178
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
R + + E R + +N V A P++A L + +++ + PE + +
Sbjct: 179 RAPRIYSALQAAYALEGRDLAAFAINPATVEKPAPPTDAQLQAFMKEHAADLTRPETRVL 238
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
S F E + + ++ Y K+ + E R+ Q+V P+ K A Q L K
Sbjct: 239 SVARFSAKALENSVTVPEADVVKTYNFRKDTLGTAETRSFVQIVAPDAKAAAVIAQRLAK 298
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
G + +A GK + + + K +PD +AD++ G + I G G +
Sbjct: 299 GDQPAVVASAFGK--QPVFIDTKPKSALPDRKVADAV-FALTAGQVSAPITGDLGVSVVK 355
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
++ I P+ S + + I +++ A K E + ++ G S+ + + + +
Sbjct: 356 LTKITPAAMPSLESQRPAIEAELKAQAAQAKAYEQTQAYQDAHDAGASLIDAATKAGALV 415
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + G D G+ +P + + + + G Y V++++ I
Sbjct: 416 LTTSPIAATGVDQTGQP---VPGLTPDAVKAAFELPSGGESELIEAGKGEYFAVRVEKVI 472
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
P+ L E+ + + W K E + +KA+ L E K+G++ + + G +
Sbjct: 473 PSAMPALAEIRGPLAQQWMVTKLLEAMKAKADAL-GERVKKGESLEAVAASAGTKVQRVP 531
Query: 533 QINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
INR + + + G D + F + G ++V +V G + +
Sbjct: 532 NINRENARQFQGLGRDLLIATFGAKPGVPFTARAPQG-GFLVAQVEKVHPGAPMQIAQIT 590
Query: 592 SYLT----QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ Q + +D+ DS A K+Q V+ NL + +
Sbjct: 591 QAMRGQTSQGLMRDVADSAQAAAKAQLKTKVNLNLAREAIG 631
>gi|197334554|ref|YP_002155561.1| peptidyl-prolyl cis-trans isomerase D [Vibrio fischeri MJ11]
gi|197316044|gb|ACH65491.1| peptidyl-prolyl cis-trans isomerase D [Vibrio fischeri MJ11]
Length = 618
Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 109/630 (17%), Positives = 240/630 (38%), Gaps = 31/630 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ IR+ S KI L ++ F+ G+ L G VG +++ + F +
Sbjct: 1 MMDRIREGSTGLAVKIILGLIIFSFVFAGVGSYLV-GGGQPLAAKVGEREITRNEFEQVY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + + A K +LD +V+ A LD +D+GL ++
Sbjct: 60 QNERNRMQSQLGEYFATLLGDPAYVEQFRKSVLDRMVNDALLDNQAQDLGLRISDDQIRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F KD KF +++ L R G + + + + L+R +V +
Sbjct: 120 TILSMPQFQ-KDGKFDEEIYNISLRRAGFSSDSFAAYLRQDLARNQLVMALESTEFTLSN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R + I LN A ++ +T+++ K + PE ++SY+
Sbjct: 179 EVQAQAALETQQREIRTITLNTADFAKNAKVTDEEITEYYNANKQQFVRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-VFPNQKEADEAFQSLKKGKKF 296
+ + + I++ E++ Y+ N +KY + E R V + + ++ +A + + G+ F
Sbjct: 239 SGNSLKAQAPITDKEIEEYYQANLDKYSTQEKREVSHILIKGDEADAQKVLDRINNGEDF 298
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A++ + SLG + + D D+ F LAK GD + ++ +FG+ I
Sbjct: 299 ATVAKDASQDIPTAKEGGSLGWIERG-VIDPEFEDAAFQLAKVGDHSGIVKSAFGFHIIQ 357
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
++ I+ T EV DI + + A++ L E + + V
Sbjct: 358 LNGIEEPTTKPLAEVSADIKSFLVDEHAADAFYSLQTELAEKAFESPDSLDDAAE--AVD 415
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ DF + K +A + + + + + + V++++
Sbjct: 416 AKIVTSDFFSQADAPKALADSAVLQAIYS--PEVKEDGLNSDVIEIAPEHVIVVRVEDVR 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
L+EV V + ++ A ++ + + + N G +
Sbjct: 474 DEMVLPLDEVKDAVIARLSQAQGEQKALELAQNVISGLNNGDNS---VMANNGLAFAEAR 530
Query: 533 QINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNS-KVGPVQEK 587
I+R D + + V+ ++ ++V+ + + ++
Sbjct: 531 MISRND--------ELANDVYRLEKPVDGKSTYAQVMDRQGNHVIVALDSVLELNDSNMS 582
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L + + L + + LK ++
Sbjct: 583 SQIATGLLRSQTQQDLTATLDTLKESTEIS 612
>gi|325274293|ref|ZP_08140404.1| periplasmic folding chaperone [Pseudomonas sp. TJI-51]
gi|324100576|gb|EGB98311.1| periplasmic folding chaperone [Pseudomonas sp. TJI-51]
Length = 623
Score = 242 bits (616), Expect = 1e-61, Method: Composition-based stats.
Identities = 103/635 (16%), Positives = 231/635 (36%), Gaps = 32/635 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ V + G + + S V Q + + +
Sbjct: 1 MLQNIRDNSQGWIAKSIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L ++ L L+S L Q ED + I
Sbjct: 61 DMQRRQLMQQLGKDFDPALLDEKLLREEALKGLISRKLLLQGAEDAKFAFSDAALDQVIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KFS D F + + G ++ D + + + G ++ +D
Sbjct: 121 QTPEFQV-DGKFSADRFDQVIRQMGYGRMQFRDMLAEEMLIGQLRTGLAGSSFVTDQQVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + PA S+A + ++++ + +P+ I YI
Sbjct: 180 AFARLE--KQTRDFASLTFKADPAAVKVSDAEVKAHYDQHAKEFMSPDQVVIDYIELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------DEAFQSLKKG 293
+++++++EL+A+YEK + ++ +E Q L KG
Sbjct: 238 AYFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVSDAQAKARAEEIEQRLAKG 297
Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ F LA+E + G F+ + D + +++ + G + + FGY +
Sbjct: 298 ENFATLAKEFSQDPGSAGNGGDLGFAGPGVYDPAFEEAL-YKLQDGQVSAPVRTQFGYHL 356
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ ++ SF +K + ++ ++ + K+L++ + + + ++ +
Sbjct: 357 IKLLGVQAPEVPSFASLKDKLTRDLKTPLVEQRYVDASKQLQDAAYEASDLAQPAQDLNL 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
G + + + D + + L + + +++KE
Sbjct: 417 KVHTSAPFGREGGEGITANRSVV-----QAAFSEEVLDEGANSTAIELDPETTVVLRVKE 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
LE V ++++ K E+ +KA++L+ + + G T
Sbjct: 472 HRKPEQLPLEAVAQNIRQHLAKEKATAELKAKADKLIAGLRDG--SIAAGSVHEGQGWKT 529
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-----GLSYVVFKVTNSKVG--- 582
+ R + + + + +F K P+ S VV ++ G
Sbjct: 530 HEAVTRGE---EGIDPEELQALFRLAKPQAKDKPVYGSVVLRDGSLVVLQLKGVNEGTTA 586
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK + YL + + L++ +T
Sbjct: 587 TDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621
>gi|229515304|ref|ZP_04404764.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TMA 21]
gi|229348009|gb|EEO12968.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TMA 21]
Length = 619
Score = 242 bits (616), Expect = 2e-61, Method: Composition-based stats.
Identities = 118/627 (18%), Positives = 248/627 (39%), Gaps = 24/627 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ + A K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + F + + L R G + Y ++ K L R ++ G +
Sbjct: 120 LILEIPQFQSQG-VFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++ + ++ Q Y+++ +KY + E R V ++ E L G
Sbjct: 239 SADGLKAQVSVDDEAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + SLG + + D + + F+L +KG + ++ FGY I
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +IK + EV++ I ++ +A + LE+ + + + K +
Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + + + P Q L K+D L+ + + + V+++E
Sbjct: 416 SATVVHTDFISAEQAPEVLTT-PAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEEF 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV + V + +K ++ NQLV K G+ D+ G S
Sbjct: 474 RPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590
I+R Q E V + + VV +++ + ++
Sbjct: 531 QMIDRSSPLANTVYAMVKPQ----EGEKVYAQAKDFDGNIVVIELSKVESKLTPAYHEQI 586
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L ++ ++ L VI+ L+ +
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613
>gi|56479244|ref|YP_160833.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
aromaticum EbN1]
gi|56315287|emb|CAI09932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
aromaticum EbN1]
Length = 633
Score = 242 bits (615), Expect = 2e-61, Method: Composition-based stats.
Identities = 108/648 (16%), Positives = 244/648 (37%), Gaps = 44/648 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + +R R +A+I L +L VPF +GL S G + + +VG K+ + F +
Sbjct: 1 MFDAVRNNKR--IAQIILALLIVPFAFFGLDSYFTSGPGGNEIATVGGSKISMNEFDQAL 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + Q +G V+ S + + +++NLV+ L D GL ++ IA
Sbjct: 59 RDQQDRLRQSMGGQVDRAMLESEAMRRSVVENLVNQRLLAMHAADSGLVVTQQQLQQVIA 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F +D +FS + + + + +G+ + + L V + +
Sbjct: 119 TVPAFQ-EDGRFSLERYEAAVRAQGMTPAMFEARLGQDLRVQQVALAVGQSAFTAQASVQ 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E R V + + A + + ++++ + + P R Y++FD +
Sbjct: 178 RFLEAQLEERKVSELKFSPDAFLAQVELPDDAAKKYYDANPERFERPARLRAEYLVFDEN 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
K++ +S+DE++ YE N ++ PE R ++ +A + K LA
Sbjct: 238 ALLKQVSVSDDEIRKFYEANTARFGQPEERNARHILIEAAADAPAEEVAKASEKAAALLA 297
Query: 301 -----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
++ G + LG F + + + +KG + V+
Sbjct: 298 QVRANPERFAELAKAESQDPGSAARGGELGFFGRGAMVKS--FEDAVFSLEKGQISDVVR 355
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402
FG+ I V +IKP+ F+EV+ +IA +++ AS ++ E + + S+
Sbjct: 356 SDFGFHIIQVVDIKPAKARPFEEVRDEIAEELKRQAASRRLAEQAEHFANLVYEQADSLQ 415
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
++ + + + G + + V V + G+
Sbjct: 416 PAAQELGLEIRQTDWISREEGSIGGFKNEKLLNGLFSDEAVKN----GRNVEAVEVSRGT 471
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ ++++ A+ EEV ++K + + ++ ++ + +K +
Sbjct: 472 LVSARVRDFEAAQRLPFEEVKASIEKQLRAEEASKLAVARGEAALAALAKG--------E 523
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSK 580
+ + R E I VF + + Y VF++ +
Sbjct: 524 QASGAWSEARVVRRGSPE---LAPAAIDAVFGAAESKLPAYAGVAMPEGGYSVFRIESVT 580
Query: 581 VGPVQEKD----KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + D +++ + ++ +A L+ +Y V +++ +++
Sbjct: 581 RPELAKDDPRLQAVSQQYQRLIAERDFNAFLASLRERYEVEINEAVLR 628
>gi|153831363|ref|ZP_01984030.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 623-39]
gi|229529056|ref|ZP_04418446.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae 12129(1)]
gi|148873155|gb|EDL71290.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 623-39]
gi|229332830|gb|EEN98316.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae 12129(1)]
Length = 619
Score = 242 bits (615), Expect = 2e-61, Method: Composition-based stats.
Identities = 118/627 (18%), Positives = 246/627 (39%), Gaps = 24/627 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ + A K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + F + + L R G + Y ++ K L R ++ G
Sbjct: 120 LILEIPQFQSQG-VFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++ + + Q Y+++ +KY + E R V ++ E L G
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + SLG + + D + + F+L +KG + ++ FGY I
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +IK + EV++ I ++ +A + LE+ + + + K +
Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + + + P Q L K+D L+ + + + V+++E
Sbjct: 416 SATVVHTDFISAEQAPEVLTT-PAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEEF 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV + V + +K ++ NQLV K G+ D+ G S
Sbjct: 474 RPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590
I+R Q E V + + VV +++ + ++
Sbjct: 531 QMIDRSSPLANTVYAMVKPQ----EGEKVYAQAKDFDGNIVVIELSKVESKLTPAYHEQI 586
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L ++ ++ L VI+ L+ +
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613
>gi|229521840|ref|ZP_04411257.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TM
11079-80]
gi|229340765|gb|EEO05770.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae TM
11079-80]
Length = 619
Score = 242 bits (615), Expect = 2e-61, Method: Composition-based stats.
Identities = 118/627 (18%), Positives = 247/627 (39%), Gaps = 24/627 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ + A K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + F + + L R G + Y ++ K L R ++ G +
Sbjct: 120 LILEIPQFQSQG-VFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++ + + Q Y+++ +KY + E R V ++ E L G
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + SLG + + D + + F+L +KG + ++ FGY I
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +IK + EV++ I ++ +A + LE+ + + + K +
Sbjct: 358 RLDDIKTPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + + + P Q L K+D L+ + + + V+++E
Sbjct: 416 SATVVHTDFISAEQAPEVLTT-PAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEEF 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV + V + +K ++ NQLV K G+ D+ G S
Sbjct: 474 RPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590
I+R Q E V + + VV +++ + ++
Sbjct: 531 QMIDRSSPLANTVYAMVKPQ----EGEKVYAQAKDFDGNIVVIELSKVESKLTPAYHEQI 586
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L ++ ++ L VI+ L+ +
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613
>gi|237807859|ref|YP_002892299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis
DSM 9187]
gi|237500120|gb|ACQ92713.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tolumonas auensis
DSM 9187]
Length = 638
Score = 242 bits (615), Expect = 2e-61, Method: Composition-based stats.
Identities = 103/637 (16%), Positives = 240/637 (37%), Gaps = 32/637 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++ +R ++ VAKI ++ + F + G+ + S + + V + + + S++
Sbjct: 3 MDKLRDGAQGRVAKIIFWLIILSFALAGVGSYINSPASNDP-AVVDDEVISAQTLEQSYQ 61
Query: 62 QELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
E + + G + L K +L+ LV+ + L+ + G+ +V
Sbjct: 62 NERARMQAQYGEAAAQLLDNPQYLAQLKKSVLERLVNQSLLNNKALNAGVRLSDEQVKDV 121
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I + P F + KF + F + L+R G + + + + L R + +
Sbjct: 122 IRQMPEFQTDN-KFDNQKFTTALSRVGYTPESFANSMRQDLIRQYWLDGILTTEFALPAE 180
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
+ + Y + R V I + ++ + +++ + + + E +++YI+ +
Sbjct: 181 VSRLDALYQQKRDVKMITIPVETFSKQITVTDQDVDAFYKAHSNEFMQSEQVKLNYIVLN 240
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------KK 292
+ K I+ ++ EL+A Y+++ E + P R V ++ ++ + ++ K
Sbjct: 241 SADLAKTIQPADSELKAYYQQHAELFTEPARRKVSHILITDKDDNAAQKKADELLAKLKS 300
Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F QLA+ + L F K + D + + F+L +K + + V+ +FGY
Sbjct: 301 GTDFTQLAKTESADTLSARQGGELDWFEKGVM-DPAFETAAFALNQKNELSAVVKSAFGY 359
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I + + + + + +V + + KA E + ++L + + + E
Sbjct: 360 HIIKLLDKQDAIETPYDKVVTIVRQKFVDEKAKELFADQQQKLSDIGFENPDSLD-AVAE 418
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ + L DF E+ KEQ ++ +++ D + + +
Sbjct: 419 GLK-LPLQKTDFIAAQQLPAEINVPAVKEQAFAEKLRDENT--NSEVISVSDTVAVMLHV 475
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+ P+ + L EV V + K AE+ ++A L+ + K G++ + L A +
Sbjct: 476 IDYKPSSAKPLSEVKDLVVAKLRATKAAEKAHTEAMALLEK-VKAGQSIDEQLTKLNAKV 534
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP----IENGLSYVVFKVTNSKVGPV 584
+ R + VF K + + V + P
Sbjct: 535 EEKKGLARFGTD---IPAPLAQAVFKLAKPADKVVSAGLYADEEGNQSVLVLEKVISAPE 591
Query: 585 QEKDKFIS----YLTQMMNKDLLDSVIAYLKSQYSVT 617
L ++ ++ ++I L+ + +
Sbjct: 592 TADAPLQQGLSEQLVKLKQEETYGALIEELRQKAKIK 628
>gi|254492046|ref|ZP_05105223.1| PPIC-type PPIASE domain protein [Methylophaga thiooxidans DMS010]
gi|224462743|gb|EEF79015.1| PPIC-type PPIASE domain protein [Methylophaga thiooxydans DMS010]
Length = 613
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 100/629 (15%), Positives = 230/629 (36%), Gaps = 35/629 (5%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+ + ++ +PF +WG++ L + + V V +++ + S +Q + +G
Sbjct: 1 WLIVGLISIPFALWGVNSYL-TGASDVVVAEVNGKEITQAELQQSLQQYRDQMRNMMGEQ 59
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ + + +LD L+ L E +G + + I +P F +D +F
Sbjct: 60 FDPAMFEGAMVKRNVLDGLIEQQLLRDANEKLGQRINDAEISQVIRTTPAFQ-RDGEFDA 118
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ + LAR G + Y L + + + Q R + R + Y
Sbjct: 119 EYYNMVLARVGYSPASYEAQLRADLMSQQLTQNIETTALATEKDVRQTLRLQEQRREIAY 178
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
V+ + ++ + Q ++ ++ NY++PE +++YI V + ++ D+L+
Sbjct: 179 GVVPVQEYVEQVSVTDDEVQQLYDNHQSNYQSPEQLKLNYIELSVATISSTLTVTEDDLK 238
Query: 255 AEYEKNKEKYFSPEIRTVEQLV-----FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
Y N+ ++ P+ R ++ Q + L+ G+ F LAEE +
Sbjct: 239 QFYADNQSQFVGPQQRRASHILIEGDDNDAQTTIEAIATRLENGEDFSSLAEELSQDPGS 298
Query: 310 ISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
S G F + + D + ++ F+L GD + + FGY + +++IK F +
Sbjct: 299 ASQGGDLGFFERDVMDPAFEEAAFALETIGDVSEPVKTEFGYHLIKLTDIKQPEGQEFSQ 358
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI-SRREKIVSIDLPLVDFAGKDV 425
V+ ++ R +A + ++L ++ + ++ G
Sbjct: 359 VRDEVEKLYRRQQAESIFYDKAEQLANLSYENPDNLDVAADDLELQIKTTESFTRNG--- 415
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
+ I +++++ FG D + + L D + + P+ + V
Sbjct: 416 ---TESGIASEQKVIAAAFGDDVLKNDLNSAVIELADDHLVVIHKNSYTPSTVLPFDSVS 472
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
+++ K +E+ ++ E + + + A E+
Sbjct: 473 PAIEQQLLFEKASEKAREHGESVLKELKQGNQATDLLPTWQEAEF--------YGRESDN 524
Query: 544 FGYDGISQVFSGPVEMVKCFPIE---NGLSYVVFKVTNSKVG-----PVQEKDKFISYLT 595
+ + F+ N +Y+V ++T G +++ LT
Sbjct: 525 ISMQILQRAFAMSKPESGSKFAGFTANNGNYIVIELTAVDEGKPADVEAEDQQALKQQLT 584
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
Q+ + + I L+ Q + + D +Q
Sbjct: 585 QVHANAEVQAFITSLREQADIEILDETLQ 613
>gi|163751873|ref|ZP_02159087.1| peptidyl-prolyl cis-trans isomerase D [Shewanella benthica KT99]
gi|161328223|gb|EDP99387.1| peptidyl-prolyl cis-trans isomerase D [Shewanella benthica KT99]
Length = 621
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 112/636 (17%), Positives = 237/636 (37%), Gaps = 41/636 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+AS+ +AK LV++ F G+S L S + +V +++ S+ ++
Sbjct: 1 MLEKIREASQGVIAKSILVLVIFSFAFSGVSSYL-GSSTEAAAATVNGEEISESALEQAY 59
Query: 61 KQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G + ++ + + +L+ LV+ LDQ ++GL ++
Sbjct: 60 QSERARLEQQLGEMFQALAADDTYLASVKQSVLERLVAEKLLDQSATELGLRVSDQQIKN 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D +F +D +++ L + G + + ++R +V VG
Sbjct: 120 AIMTEPAFQT-DGQFDNDRYLAILRQLGYQANTFRNMMRTDMTRRQLVASLVGSEFVLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R + Y +++ A + ++ +F+ + +PE + YI
Sbjct: 179 EISYLAGIQGQTRDIRYHIVDASPFVADVEVTDEQAQSFFDANLAQFMSPETLSLEYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------DEAFQSL 290
+ + + +++ E QA Y++NK++Y E R ++ + + + L
Sbjct: 239 NATDMANDVTVTDAEAQAYYDENKQQYLKAEKRLAAHILINLGDDESASKAKAEAIYAKL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ G F QLA+ + + L F + + D + KG ++ V+ SF
Sbjct: 299 QAGDDFAQLAKTESEDTFSGEQGGQLDWFEQGVM--ELAFDDVLYSLSKGSYSTVVKTSF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEIS 405
GY I + +I+P F +VK I Q++ A + + L + ++ E +
Sbjct: 357 GYHIIKLLDIQPEVEAPFVDVKDKIIAQLKDKAAVDTYYGLQQTLADVTYEVPDTLSEAA 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + P+ + + + M
Sbjct: 417 SELGVEVMTSPVFTRTNAPAPFDNSDVL-----KAAFSTNVLFDRMNSDVIEIDANHAMV 471
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++IK A +V + + K + E KA L+ ++ +
Sbjct: 472 IRIKSHTAAGTVDFTKVKAAIVERLKQEQANEVARDKAQTLMSSFNDAESS--------- 522
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVF-KVTNSK 580
+T + R + + S+ F V + NG + +V KV ++
Sbjct: 523 TEFVTKTNLGRFE---QGIDAAITSKAFQMAQPADSAVVDTVALANGYAVIVLDKVNAAE 579
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
L+ ++ ++IA LK++ V
Sbjct: 580 GIDDNLLSALKQRLSAQYSEGDYRAMIAILKAKADV 615
>gi|260773190|ref|ZP_05882106.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio metschnikovii CIP
69.14]
gi|260612329|gb|EEX37532.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio metschnikovii CIP
69.14]
Length = 619
Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats.
Identities = 111/631 (17%), Positives = 249/631 (39%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +R+ + KI L ++ + F+ G+ + + + VG+ ++ F ++
Sbjct: 1 MMERLREGVNSIAVKIILGLIILSFIFAGVGNYIVGGGN-NAAAKVGKTEISRGEFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ L + +LD++++ ++Q + +GL +V
Sbjct: 60 QNERNRMQSQLGDYFSTLLADPTYVASLRRSVLDSMINDILIEQHAQSLGLRVSDNQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F +F +++ S L R G + ++ + L R +V
Sbjct: 120 AIIAMPEFQSAG-QFDQNIYQSALRRAGFTPDAFAEYMRRSLVRDQLVAALQTSEFTLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + R V I L ++ + Q++++ D Y PE RISYI
Sbjct: 179 EVEGLSALVAQARDVRTITLPTTDFAKDVQLTDQEIEQYYQQNDDRYTRPEQMRISYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA--DEAFQSLKKGKK 295
+ ++ I I++++ +A Y+ +++KY S E R V ++ E L G
Sbjct: 239 AAQQLKEAITITDEQTKAFYDAHQDKYASKEQRKVSHIMIQGDDEQAAQAILDQLHNGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F QLA+E+ + LG + + D + + F+L + G+ + ++ FGY +
Sbjct: 299 FAQLAKEKSQDIGSSQEGGELGWIEPDTM-DAAFESAAFALQQVGEISGLVKSDFGYHVI 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K +++V +I +++ +A ++ + LE + + K +
Sbjct: 358 KLDELKAPVIKPYEQVAVEIKAELQDQQAVDRFYQLQTELERIAFESPDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D+ DF ++ P Q L + K+D L+ D + + + V+++++
Sbjct: 416 GADIQHTDFISVAELPAILS-APAVIQALRQPEVKEDQLNSD-AIEIAPEHVVVVRVEQT 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L EV + +K ++ AN LV + + D +
Sbjct: 474 RPEIILPLAEVREQIVATLSRLKAEQQALQLANDLVTGLNAGDNSLLD---THQLAFSEI 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG-PVQE 586
+++R + VFS P V + + VV + Q
Sbjct: 531 QRMDRSSPLAEI--------VFSMPKPEGEHHVYAHGKDAQGNVVVIALAAVTTEVDPQL 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L+++ + ++ ++ L+ +
Sbjct: 583 NQQIGAQLSRIGLQQNVEGILGVLRQNTKIQ 613
>gi|262171087|ref|ZP_06038765.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus MB-451]
gi|261892163|gb|EEY38149.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio mimicus MB-451]
Length = 619
Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats.
Identities = 115/631 (18%), Positives = 248/631 (39%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ K +LD +V+ L+Q +GL G+V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDGQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + KF +++ + L R G + ++ K L R ++ G
Sbjct: 120 MILEMPQFQSQG-KFDQELYQAALRRAGFTPDMFAEYLRKDLVRNQLMTALQGSEFSLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLVSQTRDIRTITLSLAEFAKKVTLSDEDIEQYYKANTERFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ +I I ++ Q Y+++ +KY S E R V ++ E L G
Sbjct: 239 SADALKAEIAIDDEAAQQYYQEHLDKYSSAEQRKVSHILIEGDDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +A+E+ + SLG ++ + D + + ++L +KG + ++ FGY I
Sbjct: 299 FTTVAKEKSQDVGSAQDGGSLGWIERDTM-DPAFEAAAYALTEKGQISGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ ++K + EV + I ++ +A + LE+ + + + K +
Sbjct: 358 RLDDVKAPVVKPYTEVAQAIKQELVDQQALDSFYAKQSELEKLAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + +A +P Q L K+D L+ + + + V+++ES
Sbjct: 416 SAKVEHTDFISAEQAPDLLA-VPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEES 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV T V + +K ++ N++V D+ G +
Sbjct: 474 RPETVLPLQEVKTQVVELLSQLKGEQQALELGNKIVTALKAGNS---DVLAENGVAFGEV 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-PVQE 586
I+R + V+S + VV ++ +
Sbjct: 531 QMIDRSSP--------LANTVYSMVKPQDGAKGYAQAKDFDGNVVVIELDKVESKVTPAY 582
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + L+++ ++ L VI+ L+ +
Sbjct: 583 HEQIATQLSRIGSQQDLAGVISVLRQSTDIE 613
>gi|221638406|ref|YP_002524668.1| YbaU [Rhodobacter sphaeroides KD131]
gi|221159187|gb|ACM00167.1| YbaU [Rhodobacter sphaeroides KD131]
Length = 621
Score = 241 bits (613), Expect = 3e-61, Method: Composition-based stats.
Identities = 128/628 (20%), Positives = 265/628 (42%), Gaps = 31/628 (4%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
+K V + ++ V +G+++ G STV SVG + + ++ + +QE+
Sbjct: 13 KKKGTQLVFWGLVGLMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTGAYARALQQEMR 69
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ +I V E A++ GLD+++ LV+ A L + IGL RV EI + F
Sbjct: 70 ALGAQINQPVTMEMAKAFGLDQQVRRRLVTEAALSNEADRIGLSVGDARVAREITGTDAF 129
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
HG +F + + L + ++E E+ + ++R+ + G GG ++D +
Sbjct: 130 HGPSGQFDRETYRLVLRQNNLSEGEFETGLREDMARSLLQGAVGGGFIAPAQMVDALHAY 189
Query: 186 YFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
E RS + + ++ A P++A L W+E + ++ APE KRI+Y +
Sbjct: 190 IAERRSFGLLRVTEANLAKPLAAPTDAELQAWYEAHPADFTAPETKRITYAALLPQDVAA 249
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
+ L+ Y++ ++ PE R VE+LVFP + A EA + L G F L E+G
Sbjct: 250 TLPTDEAALRRLYDERHAEFVQPERRLVERLVFPTAEAAAEARKRLDAGTPFETLVSERG 309
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
L+DI LG S++ + + D++F+L + G + G + V+ + + SF
Sbjct: 310 LELADIDLGDASRDALGGAA--DAVFALTEPG-IAGPVETDLGPALFRVNGVIAAHETSF 366
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
+EV+ D+ + + A + +++++ LA G ++++++ + + D
Sbjct: 367 EEVRDDLLTEYQQEAAGRAIAGRREQIDDLLAAGATLEDLAGEAGMKIATVDYAPGLDSD 426
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+ G + K T+ L DG + +++ E + + + EEV
Sbjct: 427 ISGY---------EAFRTAADKLQKDDFPETILLNDGGLLAMRLDEVVAPKLKPFEEVRD 477
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
DV + + ++++A ++ + ++EG + G + + R +
Sbjct: 478 DVAEAAHKDALTKALAARATEI-AKAAEEGTDLGSFG-----PVEDLGPMTRDGFV-EGV 530
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMM 598
+ F + + V ++ + + K + + Q +
Sbjct: 531 PETLVPAAFEMQQGAFRAIEGADFAG--VLRLDAVEPAAADDEAAKALKASLSAQIEQAL 588
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++D L + L + +T++D I
Sbjct: 589 SQDALALFSSSLMQEAGITLNDAAISAV 616
>gi|297579436|ref|ZP_06941364.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae RC385]
gi|297537030|gb|EFH75863.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae RC385]
Length = 619
Score = 241 bits (613), Expect = 3e-61, Method: Composition-based stats.
Identities = 118/627 (18%), Positives = 245/627 (39%), Gaps = 24/627 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ + A K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + F + + L R G + Y ++ K L R ++ G
Sbjct: 120 LILEIPQFQSQG-VFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++ + + Q Y+++ +KY + E R V ++ E L G
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + SLG + + D + + F+L +KG + ++ FGY I
Sbjct: 299 FATLAKEKSQDLGSAEEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ IK + EV++ I ++ +A + LE+ + + + K +
Sbjct: 358 RLDEIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + + + P Q L K+D L+ + + + V+++E
Sbjct: 416 SATVVHTDFISAEQAPEVLTT-PAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEEF 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV + V + +K ++ NQLV K G+ D+ G S
Sbjct: 474 RPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590
I+R Q E V + + VV +++ + ++
Sbjct: 531 QMIDRSSPLANTVYAMVKPQ----EGEKVYAQAKDFDGNIVVIELSKVESKLTPAYHEQI 586
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L ++ ++ L VI+ L+ +
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613
>gi|15641920|ref|NP_231552.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121591616|ref|ZP_01678864.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 2740-80]
gi|121727851|ref|ZP_01680918.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae V52]
gi|147674490|ref|YP_001217451.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae O395]
gi|153820108|ref|ZP_01972775.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae NCTC 8457]
gi|153823840|ref|ZP_01976507.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae B33]
gi|227082048|ref|YP_002810599.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae M66-2]
gi|229507986|ref|ZP_04397491.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae BX
330286]
gi|229511777|ref|ZP_04401256.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae B33]
gi|229518914|ref|ZP_04408357.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC9]
gi|229607532|ref|YP_002878180.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae MJ-1236]
gi|254849006|ref|ZP_05238356.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MO10]
gi|255745323|ref|ZP_05419272.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholera CIRS 101]
gi|262156047|ref|ZP_06029167.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae INDRE
91/1]
gi|262167880|ref|ZP_06035580.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC27]
gi|298498044|ref|ZP_07007851.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MAK 757]
gi|9656453|gb|AAF95066.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121546529|gb|EAX56737.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae 2740-80]
gi|121629887|gb|EAX62301.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae V52]
gi|126509350|gb|EAZ71944.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae NCTC 8457]
gi|126518637|gb|EAZ75860.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae B33]
gi|146316373|gb|ABQ20912.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae O395]
gi|227009936|gb|ACP06148.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae M66-2]
gi|227013816|gb|ACP10026.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae O395]
gi|229343603|gb|EEO08578.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC9]
gi|229351742|gb|EEO16683.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae B33]
gi|229355491|gb|EEO20412.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae BX
330286]
gi|229370187|gb|ACQ60610.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae MJ-1236]
gi|254844711|gb|EET23125.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MO10]
gi|255737153|gb|EET92549.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholera CIRS 101]
gi|262023607|gb|EEY42308.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae RC27]
gi|262030225|gb|EEY48869.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio cholerae INDRE
91/1]
gi|297542377|gb|EFH78427.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MAK 757]
Length = 619
Score = 241 bits (613), Expect = 3e-61, Method: Composition-based stats.
Identities = 117/627 (18%), Positives = 245/627 (39%), Gaps = 24/627 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPTYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + F + + L R G + Y ++ K L R ++ G
Sbjct: 120 LILEIPQFQSQG-VFDSTAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++ + + Q Y+++ +KY + E R V ++ E L G
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + SLG + + D + + F+L +KG + ++ FGY I
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +IK + EV++ I ++ +A + LE+ + + + K +
Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + + + P Q L K+D L+ + + + V+++E
Sbjct: 416 SATVVHTDFISAEQAPEVLTT-PAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEEF 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV + V + +K ++ NQLV K G+ D+ G S
Sbjct: 474 RPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590
I+R Q E V + + VV +++ + ++
Sbjct: 531 QMIDRSSPLANTVYAMVKPQ----EGEKVYAQAKDFDGNIVVIELSKVESKLTPAYHEQI 586
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L ++ ++ L VI+ L+ +
Sbjct: 587 ATQLERIGSQQDLAGVISVLRQNTDIE 613
>gi|330808576|ref|YP_004353038.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376684|gb|AEA68034.1| putative peptidylprolyl isomerase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 623
Score = 241 bits (613), Expect = 3e-61, Method: Composition-based stats.
Identities = 92/636 (14%), Positives = 217/636 (34%), Gaps = 34/636 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + V+ + G + + S+ V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVALMALTGFDAIFKATTNSNEAAKVNGENISQNELSQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G ++ L L L+ L Q D + I
Sbjct: 61 DMQRRQLMQQLGKDFDASLLDEKMLRDSALKGLIDRKLLLQGAHDAKFAFSEAALDQVIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KFS + F + + G + ++ + + + G ++ +
Sbjct: 121 QTPEFQV-DGKFSPERFDQVIRQLGYSRMQFRQMLAQEMLIGQLRAGLAGSGFVTDAQVL 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ LN + PA ++ + +++++ + P+ I Y+
Sbjct: 180 AFARLE--KQTRDFATLNIKADPASVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKKA 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSLKKG 293
++ + +++LQA Y+K + + + + +E L KG
Sbjct: 238 SFFDQVSVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKVTEAQAKAKIEEIQARLAKG 297
Query: 294 KKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ F LA+E + + LG + D ++++L K + + FG
Sbjct: 298 ESFEALAKEFSQDPGSANNGGDLGYAGPG-VYDPEFEKALYALNKDQ-VSAPVRTDFGLH 355
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + ++ +F +K + +++ + ++ E K+LE+ + + + ++ K
Sbjct: 356 LIKLLGVEAPEVPTFASLKDKLTRELKTQQVEQRFVEATKQLEDASFEASDLAQPAQDLK 415
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ G + A + + + + L + + ++ K
Sbjct: 416 LTVHTSAPFGREGGEGIAANRAVV-----TAAFSPEVLNEGANSTAIELDPETVVVLRAK 470
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
E LE V ++ + ++A++L+ G
Sbjct: 471 EHRKPEQLPLESVAGPIRAQLTKEHASAAAKTRADELIASLRDGKVALDKPVDGQG--WK 528
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-----GLSYVVFKVTNSK---V 581
T R + + +F P K P S +V ++
Sbjct: 529 ATQAATRN---QEGIDPAVLQALFRMPKPESKDKPTFTSVTLPDGSLMVVRLNGVNEAAA 585
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK ++ YL + + + L+SQ +
Sbjct: 586 PTDEEKAEYRRYLASRVGQQDFAAYRKQLESQAEIK 621
>gi|261855012|ref|YP_003262295.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
neapolitanus c2]
gi|261835481|gb|ACX95248.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
neapolitanus c2]
Length = 645
Score = 241 bits (613), Expect = 4e-61, Method: Composition-based stats.
Identities = 101/650 (15%), Positives = 234/650 (36%), Gaps = 39/650 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML +R+ + W+A + ++ +PF++WG+ + FS + V V + +F +
Sbjct: 1 MLMDLRERIQGWIAYAIIGLISIPFVLWGVGEY-FSGGKNQPVAEVDGLPISQQAFEQAV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
Q+ I QK+G V++E +S+ LD+++LD +++ L F++ G A V I
Sbjct: 60 SQQRQAIIQKLGGSVSAEMLQSLNLDQQVLDQMINERVLRVFVQKAGFRAPDAVVADLIR 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F D F + + +A G + + + + + LD
Sbjct: 120 SEPAFKT-DGAFDVKKYEAFVAARGTTVANFEAGLKQDIVMQTLENAISESTIVTAPELD 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Q + + R + + L+ V P++ + ++ +K + PE ++ YI
Sbjct: 179 QIVKLRDQTREIGMVRLDRARVIDTVAAPTDGAIEAYYAAHKGEFIRPERVKLRYIELSP 238
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+++++ +++ Y +K + +RTV ++ K AD A K K
Sbjct: 239 KTLAPSVKVTDAQVEQAYANYVKKQEAQVVRTVRHILISVPKNADGAAIEAAKNKALAAR 298
Query: 300 A-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
A ++ G LG + + + K G+ + +
Sbjct: 299 AAIVSGKTSFADEARAVSDDPGSKNKGGDLGEVAPGQMVKP--FEEAMDALKVGEVSEPV 356
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSM 401
FG+ + V+ +++ + +++ + + + ++L + S+
Sbjct: 357 RTQFGWHLIEVTKESHPDIKPLADMRDKMVAEVQEQQVEKIYYNEGEKLSDQSYEHPDSL 416
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
+ + +D G +AA Q F L+ + + L
Sbjct: 417 IPSAEALGLKVQASDWLDRNS----GTGIAANEKVRQAAFSKEVLKQKLN-SNLIELGVN 471
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ +++ + PA L EV + K + ++ + A + + + + + +
Sbjct: 472 HAVVIRVDQHEPATQLTLAEVKDQIATTLK-DQAIDKALADAAKNIGKKLTADADPQAVA 530
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV-------EMVKCFPIENGLSYVVF 574
GA+ + + R + + I F+ N VV
Sbjct: 531 TAAGATWVAPVWLKRTARDAPI-PAEAIQAAFALAPAPDGQLASKALALSDGNEALVVVE 589
Query: 575 KVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+ + Q+K+ + + Q + L ++ L+ + +T++
Sbjct: 590 AIKDGDPATISEQDKEALSAQIQQAQAQQTLGVLLKALRDEAKITINQKA 639
>gi|221135500|ref|ZP_03561803.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola sp.
HTCC2999]
Length = 626
Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats.
Identities = 92/634 (14%), Positives = 231/634 (36%), Gaps = 31/634 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE +R+ + A I + ++ + F+ G+ L S + V + + + ++
Sbjct: 1 MLERMREGLQGPWAMIIVALIVLSFVFAGVGSYLASPV-DTAAAKVNGEDISARALDQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + + G ++S + IL+ LV+ ++Q + +GL ++
Sbjct: 60 QNERARLESQFGEGISSLFANPEYLANFRQGILERLVADKLVEQKAQALGLRVSDTQIKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F F++D +++ L + G ++ ++ +++ + +
Sbjct: 120 TILSMPEFQV-GGVFNNDRYLAVLRQAGFQVDDFRNYMRNTMTKEQLSRALLATDFVVPN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R V Y + + + S+ +T +++ D Y E I Y+
Sbjct: 179 EVITQLNLGRQTRDVKYATIPTANFADTIELSDLDITNYYQTNIDTYDTQEQVSIEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------DEAFQSL 290
V + + ++ +++ Y+ N Y + R V ++ + + E L
Sbjct: 239 KVSDLMDGVNATDAQIEEYYQFNIANYRTEAQRRVSHILIESGDDTAAAEAKIAEVQAKL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G+ F +LA+ + L + + D + +++ +L GD + ++ F
Sbjct: 299 NAGEDFAELAKTYSDDTFSAENGGDLEFITIGDL-DPAFDEAVLALENVGDVSDIVATDF 357
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEIS 405
G+ + +++ P+ F +VK +IA +++ A+E + + E ++++++
Sbjct: 358 GFHLITLTDFTPAEVTPFVDVKDEIAEAVKLEIATEAFFVQQQTMAELAFEVPDTLEDVA 417
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ PL + A + + + L D +
Sbjct: 418 SAVDKAIVKTPLFSASNVPPALNNSAVLAN-----AFSAEFIEENMNSDVIELNDEHVLV 472
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++I + P R R LEEV V T K+ E + NQ++ + ++ G
Sbjct: 473 MRIAQYEPQRTRSLEEVKEQVVTALTTQKSQEAALAYVNQVIAA---SSEEQANLLSQQG 529
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV---VFKVTNSKVG 582
+L + + R + + +F+ + + V +
Sbjct: 530 LALTELSSVPREG--LEGIDSAAVEVLFTLSQSNAQAAVTLPSGDVAMVELVAVNDVTTP 587
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ ++ + +T ++ + + L + +
Sbjct: 588 DTELGEQLRNRMTGQRAQNSYQAFVDALTADAEI 621
>gi|295689570|ref|YP_003593263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
ATCC 21756]
gi|295431473|gb|ADG10645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
ATCC 21756]
Length = 653
Score = 240 bits (612), Expect = 4e-61, Method: Composition-based stats.
Identities = 120/642 (18%), Positives = 256/642 (39%), Gaps = 22/642 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML R +++ A + +L V F I+G+SD +F S V+ G +++ F +
Sbjct: 1 MLAGFRSFAKSPFAVLLFGLLIVSFAIFGISD-VFKGPRGSGVIDAGSREMSAQDFKLRF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
I ++ G + ++A G+DK+I+ L ++ I +G+ + +
Sbjct: 60 DNYRKEIERRNGEPMTPDQAVERGVDKQIVQELALQESIAAAIAKMGVVPSDKLIAKTVH 119
Query: 121 RSPL--------FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
F KF ++ + LA+ + + Y +++ G+
Sbjct: 120 EQMSSLPPGQRPFDPITGKFDSKLYAALLAQNNLTPQAYEASLRDEIAQAHFFSAVADGL 179
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
+ + + E R V +N V A P++A L + ++ D PE + +
Sbjct: 180 KAPRIYAALQAAYGLEARDVAAFAVNPASVEKPAPPTDAQLMAFMKENADRLTRPETRVL 239
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
S + E + ++ E+Q ++ K+ PE R++ Q+V P+ K A Q L +
Sbjct: 240 SIMRVSAKALEPTVTLNPAEVQKAFDFRKDSLAKPETRSLIQIVAPDAKTAATISQRLAR 299
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
G+ +A+ GKS ++L K +PD +AD+ G + I+G G +
Sbjct: 300 GEDPATVAKAYGKSP--VALIDKPKSALPDRKVADAA-FSLAVGQVSGPINGELGVSVVK 356
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V+ + P + V+ +I ++R A K + + ++ G + + + +
Sbjct: 357 VTKVTPGVVATLDSVRPEIEAEVRAQTAQSKAYDQTQAYQDAHDAGADLVAAASKAGAMV 416
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + G D G+ A + +++ FG D + L G Y V++++ +
Sbjct: 417 VTTAPITAQGADQMGQPAAGL--TPEMIKTAFGLPQGGESD-LIELGKGEYYAVKVEKVV 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
PA L E+ + W + + + +KA+ L K+G++ + + +++
Sbjct: 474 PAAMPPLAEIKPQLTAVWMGQEMGKRLKAKADALAAR-VKKGESLEAVAASAQSNVQRVP 532
Query: 533 QINRMDNENK-FFGYDGISQVFSGPVEMVKCF-PIENGLSYVVFKVTNSKVGPVQEKDKF 590
++R + + G + F V + G +YVV K+ P + ++
Sbjct: 533 GLSRQNAQQHMGLGPAFLGAAFDAKPNEVFTARAGQQGEAYVVAKLEAVHAAPTNDVARY 592
Query: 591 I----SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ + +DL ++ A K+Q + L ++ +
Sbjct: 593 AVLAQAQAANGLMRDLGEASRAAAKAQLKTKTNLTLARQAIG 634
>gi|313201268|ref|YP_004039926.1| ppic-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
MP688]
gi|312440584|gb|ADQ84690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
MP688]
Length = 632
Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats.
Identities = 102/652 (15%), Positives = 224/652 (34%), Gaps = 41/652 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S++W+AK+ L + +PF I G+ L S ++ V + + + NS
Sbjct: 1 MLEAIRERSKSWLAKLILAAVTIPFAIVGIDTYLRDAGSSVSIAKVDGESISVQEYNNSM 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + + + + ILD L+ L+ + + I
Sbjct: 61 QRLRNQL--QAEGKTDPSVLEQPDVKQSILDRLIINRLLNNAVTKSHFAIGDAALSDHII 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F ++ KFS + + L + ++ L +
Sbjct: 119 TLPEFQ-ENGKFSQETYDRLLTSNRLTPSQFESTMRTDLLVQQAREGLAALAYLPEPISK 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + R V + A + +++++KD ++ PE ++ ++LF +
Sbjct: 178 QTLATEHQQREVTIAEIKTADFLDQVKVDEAQIKAYYDQHKDKFKVPEQVKLEFVLFSSN 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290
K+++S++E++ Y++N K+ E R ++ A +
Sbjct: 238 NLIPKVQVSDEEVKKYYDENAAKFQGNEQRRASHILISFGVSATAEAKQQAKKQAEEVLA 297
Query: 291 ---KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+ +F LA++ K LGSF + + + K G+ + ++
Sbjct: 298 QVRQHPDQFADLAKKYSKDPGSAEKGGDLGSFGRGMMVKP--FEDAVFSMKPGEISNLVE 355
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
FGY I ++ I + F K I ++ KA E + + +
Sbjct: 356 SEFGYHIIKLTEIT-GQSQGFDAAKPQIKAELLYQKAIALFAEQAESFNNMVYEQS--TS 412
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ + + D+ K + K + V + +
Sbjct: 413 LKPVADAFGLQVQHTDWISHADGAKYFKS--DKLMNMVFAEEVLKDKRNTEAVEVSPNNL 470
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ ++ + PA R EEV ++ K + A+ K + + + K+
Sbjct: 471 ISARVVDYKPAAPRSYEEVKAGIEGVLKAEQAAKLAIKKGEAALADLRQG--------KS 522
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKV 581
+ I+R + + ++ F V + + ++ Y++ KV
Sbjct: 523 PQLDWIPPVTIDRSN--AQGLTDVAMNNAFKIDVSKLPAYAGVADSNKGYLLIKVNGVNT 580
Query: 582 GPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
P E L + + + + + LK + +TV+ L+ G++
Sbjct: 581 PPANEDTDKASARELQAALASEYVAAYVKSLKDKSKITVNSRLLLSSGTGDQ 632
>gi|313499610|gb|ADR60976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
BIRD-1]
Length = 623
Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats.
Identities = 101/635 (15%), Positives = 230/635 (36%), Gaps = 32/635 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ V + G + + S V Q + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L ++ L L+S L Q ED + I
Sbjct: 61 DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KFS D F + + G ++ + + + + G ++ +D
Sbjct: 121 QTPEFQV-DGKFSADRFDQVIRQMGYGRMQFREMLGEEMLIGQLRTGLAGSSFVTDQQVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + PA S+ + ++++ + +P+ I YI
Sbjct: 180 AFARLE--KQTRDFASLTFKADPAAVKVSDEEIKAHYDQHAKEFMSPDQVVIDYIELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSLKKG 293
+++++++EL+A+YEK + + + A+E Q L KG
Sbjct: 238 AFFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVTDAQAKARAEEIEQRLAKG 297
Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ F LA+E + + G F+ + D + +++ + G + + FGY +
Sbjct: 298 EDFAALAKEFSQDPGSANSGGDLGFAGPGVYDPAFEEAL-YQLQNGQVSAPVRTEFGYHL 356
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ ++ SF +K + +++ ++ + K+L++ + + + ++ +
Sbjct: 357 IKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQDAAYEASDLAQPAQDLNL 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
G + A + D + + L + + +++KE
Sbjct: 417 KVHTSAAFGREGGEGITANRAVV-----QAAFSEEVLDEGANSTAIELDPETTVVLRVKE 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
L+ V ++++ K E+ +KA++L+ + + G
Sbjct: 472 HRKPEQLPLDAVAKNIREHLAKEKATAELKAKADKLIAGLRDG--SIAAGSVHEGQGWKA 529
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-----GLSYVVFKVTNSKVGPV- 584
+ R + + +F K P+ S VV ++ G
Sbjct: 530 YEAVTRGE---DGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVNEGAAA 586
Query: 585 --QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK + YL + + L++ +T
Sbjct: 587 TDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621
>gi|293392541|ref|ZP_06636861.1| peptidyl-prolyl cis-trans isomerase D [Serratia odorifera DSM 4582]
gi|291424943|gb|EFE98152.1| peptidyl-prolyl cis-trans isomerase D [Serratia odorifera DSM 4582]
Length = 627
Score = 240 bits (611), Expect = 5e-61, Method: Composition-based stats.
Identities = 117/629 (18%), Positives = 250/629 (39%), Gaps = 23/629 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ + L SG V Q + + ++
Sbjct: 1 MMDNLRAAANNVVLKIILALIILSFVLTGVGNYLIGGSG-DYAAKVNGQVIERAQLEQAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++ L ++ L L+ LDQ+ + +GL +V
Sbjct: 60 QSERSRMQQQLGEQFSALAGNEGYMQQLRQQALSQLIDNMLLDQYAKKLGLSISDDQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F + +F + ++ + R G + Y + L V+ F
Sbjct: 120 AIRKAPYFQT-NGQFDNAKYLDLITRMGYSADNYAQSMRQQLLNQQVIQAFGNSGFVLPS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D + R V ++ + A + S+ L +++ + K+++ APE +SYI
Sbjct: 179 ESDAMAALVLQERDVRLATIDLNALQAKQNVSDDELKEYYNQNKNSFIAPEQVEVSYIPM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + KI +++ ++ A Y+++K Y PE + + + EA L KG F
Sbjct: 239 DAAAMQSKITVNDADISAYYDQHKSSYGQPERKNYSVIQLKTEAEAKAVLDELNKGADFA 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA+E+ + G PD + + L++KG + V+ S GY+I ++++
Sbjct: 299 TLAKEKSTDIISKRNGGELGWLEPDTTADELKEAKLSEKGQLSGVVKSSVGYLIVRLNDV 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P EV+ IA++++ KA + +++ E + ++ E+ +
Sbjct: 359 EPEKLKPLSEVRDSIADKVKQEKAVDAYYALQQKVSEAATN--DNESLASAEEAAGVKAA 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D E+ P + + + P S + + +++ P
Sbjct: 417 KTAWFTRDNVPAELNFKPVVQAIFDGSLIGENGSPGSNSDVINVEGDRAFVIRVSGHKPE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V V + K K ++ + +L++E + + K G S ++
Sbjct: 477 GVEPFDKVKDHVAELVKRNKAVQQAKLQGEKLLVELKQGKG--DEALKAAGLSFGAVQKM 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
R +++ VF+ P V + + V+ + K G P E
Sbjct: 535 ARAPEDSQ-----LTESVFALPHPQQGKPVYGMSQDRQDNVVLIALEAVKPGTLPADEMK 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
F + + DS++A L+ + +
Sbjct: 590 TFAGKMQESAIGVTFDSLLANLRKEAKIK 618
>gi|90579274|ref|ZP_01235084.1| putative peptidyl-prolyl cis-trans isomerase D [Vibrio angustum
S14]
gi|90440107|gb|EAS65288.1| putative peptidyl-prolyl cis-trans isomerase D [Vibrio angustum
S14]
Length = 630
Score = 240 bits (610), Expect = 6e-61, Method: Composition-based stats.
Identities = 117/637 (18%), Positives = 239/637 (37%), Gaps = 36/637 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +R+ + + KI L ++ F+ G+ L + V +++ +F ++
Sbjct: 1 MMERLREGANSIWVKIILSLIIFSFVFAGVGSYL-AGGNEQVAAKVNDKEISQRAFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + Q++G ++ + A +L+ +V+ ++Q ++GL +V
Sbjct: 60 QNQRNQMQQRLGDYFSTLMGDPAYVQQFRNSVLERMVNDELIEQRATELGLGVSDAQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D F+++ + L R GI+ +++ + K + R + G N
Sbjct: 120 AIVAMPAFQV-DGVFNNEQYNLTLRRAGISPEQFAESIRKDMLRQQFLSALEGSDFALNN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L++ ++ + R V + LN ++ ++EK K + P ++SYI
Sbjct: 179 ELNELRKLESQERVVRTLKLNLADFTDKVTVTDEEAKAYYEKNKTQFTRPAQVKVSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----ADEAFQSLKK 292
I+I++ E +A Y ++K KY + E V ++ + A+ LK
Sbjct: 239 SDKNLVNNIKITDKEAEAYYNEHKSKYSTAEKIQVSHILVKGDSDASKAKAEALLAELKA 298
Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F +A++ L F K + D + + FSLAK GD + ++ SFGY
Sbjct: 299 GANFADVAKKSSDDTFSAKDGGKLDWFGKGVM-DPAFEKAAFSLAKPGDMSGLVKSSFGY 357
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407
I + I+ F +VK I +++ + +E+ + +L E S+D+ +
Sbjct: 358 HIILLDGIEEPKVKPFADVKASIVAELQEQQVAEQFYKLQSKLAETAFESPDSLDDAAEA 417
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
K I + + ++ K Q + D + + + V+
Sbjct: 418 VKAKIIKTGFISL-----QDEKGVLSDKKVQEALQSPEVHDDGMNSDVIEIAPEHVVVVR 472
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ ++ P +V VK K ++ + KA+ ++ D+ G S
Sbjct: 473 VDDARPESVLPFTDVEAKVKTLLAQQKGEKQATEKADSIIAALRDGKS---DVVAKDGLS 529
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-------ENGLSYVVFKVTNSK 580
I R + + F+ P N + KV N
Sbjct: 530 FSGDQTITRSGPDA-----NVARVAFTLPKPKDGKVSYGMTRDNKGNVEIIALDKVVNVA 584
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+F + + M + L + + L+ VT
Sbjct: 585 PSKDDVDTQFATQVENMFAQQDLSATLQTLRESAKVT 621
>gi|156935006|ref|YP_001438922.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Cronobacter
sakazakii ATCC BAA-894]
gi|156533260|gb|ABU78086.1| hypothetical protein ESA_02857 [Cronobacter sakazakii ATCC BAA-894]
Length = 625
Score = 240 bits (610), Expect = 7e-61, Method: Composition-based stats.
Identities = 124/636 (19%), Positives = 253/636 (39%), Gaps = 32/636 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+S+ L S+ V Q++ + N+
Sbjct: 1 MMDNLRAAANHVVLKIILGLIILSFVLTGVSNYLI-GGNSNYAAKVNDQEISRAQLENAV 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + +++G + S L ++ L L+ A +DQ+ + L +V
Sbjct: 60 NIERNNLERRLGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLNISDEQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F D KF + + + + G++ +Y L+ +V +G
Sbjct: 120 SIFKNPAFQS-DGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMGSDFILPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
DQ + + R V + + S + +++++ +N+++PE R+SYI
Sbjct: 179 ESDQFAALFAQQRQVRTATIAVDALAQKQQVSEQEIKDYYQQHTNNFQSPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + S DE+QA Y+K+++++ P+ + + EA LK+G F
Sbjct: 239 DAAALAE--NASEDEIQAYYDKHQDEFGQPQRNRYSLIQTKTEDEAKAILAQLKQGADFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G PD ++ L +KG + VI S G++I +
Sbjct: 297 TLAKEKSVDVITARNGGDMGWLEPGTTPD-EFKNAG--LKEKGQLSDVIKSSVGFLIVRL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+I P+ EV DI+ +++ KA + +++ + + ++ EK +
Sbjct: 354 DDITPATVKPLSEVHNDISAKVKQEKALDAFFALQRKVSDAANN--DNESLASAEKAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL--FRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +D +E+ P + + + P S + + ++I +
Sbjct: 412 KAVETGWFSRDAVPEEINFKPVADAVFGGNLLGENGTPGSNSDIITVDGDRAFVLRITDH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P ++ L EV V K K + + +A L+ K GK + K G +
Sbjct: 472 KPQAEKPLAEVKDQVTALVKHQKALKAANEEAQNLLSAL-KAGKG-DEALKAAGIAFSPV 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVE--MVKCFPIENG--LSYVVFKVTNSKVG--PVQ 585
R + VF+ P+ + I N + V+ + + G P
Sbjct: 530 KTFERTTQDTLTQP------VFALPLPAKDKPSYGIGNDMQGNVVLLALDEVRSGTMPDA 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+K LTQ + D+++ L+ + + D
Sbjct: 584 QKKAMAQRLTQNNAEIAFDALLKGLRKDAKIKLGDA 619
>gi|260366277|ref|ZP_05778733.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
K5030]
gi|308114046|gb|EFO51586.1| peptidyl-prolyl cis-trans isomerase D [Vibrio parahaemolyticus
K5030]
Length = 555
Score = 240 bits (610), Expect = 7e-61, Method: Composition-based stats.
Identities = 96/567 (16%), Positives = 226/567 (39%), Gaps = 27/567 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ L + S ++ VG ++P F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYLVNGSN-NSAAKVGNTEIPRGEFEMAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ A K +LD +++ LDQ E +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDAQVRS 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + +F +++ + L R G + + ++ + L R ++
Sbjct: 120 MILEMPQFQS-NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLTALQSSEFTLPG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + R + + ++ + ++ + +++ DN+ PE ++SY+
Sbjct: 179 EVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKANPDNFTRPEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+K+I++++++++ Y+++ +KY S E R V ++ EA L G
Sbjct: 239 SAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEGDDEAKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +A+E+ + LG ++ + D + ++ F+L GD + ++ FGY I
Sbjct: 299 FAAVAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALKNPGDMSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +K + F EV +I ++ KA ++ E LE + + K +
Sbjct: 358 KLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELERVAFEYPDSLDDAS--KAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ DF + + + + LL + + + + V++++S
Sbjct: 416 NQEVKTTDFISQVDAPEVLRNQAVMQALLS--PEVKEDGLNSEAIEVAPEHIIVVRVEDS 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L EV V + VK + ++V ++ + +
Sbjct: 474 RDETVLPLAEVKDQVVAELSRVKGEQGALELGTKVVAALNEGNT---AVLAENNLTFGEQ 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVE 558
++R + VF+
Sbjct: 531 ETVDRRSP--------LATTVFAMAKP 549
>gi|148548673|ref|YP_001268775.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
F1]
gi|148512731|gb|ABQ79591.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
F1]
Length = 623
Score = 240 bits (610), Expect = 7e-61, Method: Composition-based stats.
Identities = 100/635 (15%), Positives = 229/635 (36%), Gaps = 32/635 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ V + G + + S V Q + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L ++ L L+S L Q ED + I
Sbjct: 61 DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KFS D F + + G ++ + + + + G ++ +D
Sbjct: 121 QTPEFQV-DGKFSADRFDQVIRQMGYGRMQFREMLGEEMLIGQLRTGLAGSSFVTDQQVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + PA S+ + ++++ + +P+ I YI
Sbjct: 180 AFARLE--KQTRDFASLTFKADPAAVKVSDEEVKAHYDQHAKEFMSPDQVVIDYIELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------DEAFQSLKKG 293
+++++++EL+A+YEK + ++ +E Q L KG
Sbjct: 238 AFFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVSDAQAKARAEEIEQRLAKG 297
Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ F LA+E + + G F+ + D + +++ + G + + FGY +
Sbjct: 298 EDFAALAKEFSQDPGSATSGGDLGFAGPGVYDPAFEEAL-YQLQNGQVSAPVRTEFGYHL 356
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ ++ SF +K + +++ ++ + K+L++ + + + ++ +
Sbjct: 357 IKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQDAAYEASDLAQPAQDLNL 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
G + A + D + + L + + +++KE
Sbjct: 417 KVHTSAAFGREGGEGITANRAVV-----QAAFSEEVLDEGANSTAIELDPETTVVLRVKE 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
L+ V ++++ K E+ +KA++L+ + + G
Sbjct: 472 HRKPEQLPLDAVAKNIREHLAKEKATAELKAKADKLIAGLRDG--SIAAGSVHEGQGWKA 529
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-----GLSYVVFKVTNSKVGP-- 583
+ R + + +F K P+ S VV ++ G
Sbjct: 530 YEAVTRGE---DGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVNDGATA 586
Query: 584 -VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK + YL + + L++ +T
Sbjct: 587 TDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621
>gi|170727449|ref|YP_001761475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
ATCC 51908]
gi|169812796|gb|ACA87380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella woodyi
ATCC 51908]
Length = 619
Score = 240 bits (610), Expect = 7e-61, Method: Composition-based stats.
Identities = 110/636 (17%), Positives = 238/636 (37%), Gaps = 43/636 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ +AK LV++ + F G+S L S + +V +++ S+ ++
Sbjct: 1 MLEKIREGSQGVIAKSILVLVILSFAFTGVSSYL-GSSTEAAAATVNGEEISESALEQAY 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G + ++ + + + +L+ LV+ LDQ ++GL ++
Sbjct: 60 QSERARLEQQLGEMFEALAADDSYLASVKQSVLERLVAEKLLDQSATELGLRVSDEQIRT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF +D + + L + G + D ++R +V VG
Sbjct: 120 AIMTEPAFQT-DGKFDNDRYQAILRQLGYQANSFRDMMRTDMTRRQLVASLVGSEFVLPS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D + R + Y V++ A A S+ +++ + +PE + YI
Sbjct: 179 EADYLAGIQGQTRDIRYHVIDATPYIAQAVVSDEDARAFYDANLAQFMSPETLSLEYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------DEAFQSL 290
+ + + ++++E Q Y++NK++Y PE R ++ + D + L
Sbjct: 239 NAKDMANDVVVTDEEAQTYYDENKQQYLKPEKRLAAHILVNLGDDESAAKAKADAIYAKL 298
Query: 291 KKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ G++F +LA+ + + L F K + + D + G+++ V+ SF
Sbjct: 299 QAGEEFAELAKTESEDTFSGEQGGQLDWFEKGVM-EPEFDD-VLFSLSNGEYSAVVKTSF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEIS 405
GY I + +++P F++VK I Q++ A + + L + ++ E +
Sbjct: 357 GYHIIKLLDLQPGAEAPFEDVKAKILAQLKEKHAIDTYFGLQQTLADVSYEVPDTLSEAA 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + P+ + + + + M
Sbjct: 417 KELGVEVQTTPVFARNSAPAPFDKPDVL-----KAAFSDSVLLDGMNSDVIEVDANHAMV 471
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++IK A ++V + + + + + E +A +L+ + +
Sbjct: 472 IRIKSHTAAGTVAFDKVKSGIVQRLQQEQANEVAREQAQELMTAF-----------PSTE 520
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIENGLSYVVFKVTNSKVG- 582
+T R + + I++ F P + + Y V +
Sbjct: 521 VEFVTKTNAGRFEQDIDG---AIINKAFQMAQPADSAVVDTVALASGYAVIVLDKVNAAQ 577
Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
L ++ ++IA LK+ V
Sbjct: 578 GIDENMLGALKQRLNAQYSEGSYRALIATLKANSEV 613
>gi|116747610|ref|YP_844297.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
fumaroxidans MPOB]
gi|116696674|gb|ABK15862.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
fumaroxidans MPOB]
Length = 632
Score = 240 bits (610), Expect = 7e-61, Method: Composition-based stats.
Identities = 97/638 (15%), Positives = 244/638 (38%), Gaps = 34/638 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML + R+ S++W+ K L+++ + F+ WG + + VV + + + + N +
Sbjct: 1 MLNLFREHSKSWMIKALLILVAIVFVWWGGATY--QSKSDTAVVQIDDEFISERDYYNVY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + ++G + + + L ++LD L++ + + ++GL A V I
Sbjct: 59 EKMVTRYRTQLGKAWSEKLVEEMNLKGQVLDMLINRYLVSKAARELGLSASTEEVRRRIL 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P+F D +F + L +E + + + + ++ ++ + ++ +
Sbjct: 119 EYPVFLN-DGRFDQLTYERVLRQERLTPEGFEKDIAESIAYERLLNFIKRQVVVTDEEVT 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R + + Y + + + ++F+ +++ Y PE +R S +L+
Sbjct: 178 ADYRTNYGQVQIAYALFDPKSFEDKVTVDEQGAQEYFQNHRERYMEPEKRRFSLVLYKPE 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQ 288
+ ++ D+++ Y+ + +Y + Q++F +++A E
Sbjct: 238 AYMDQAGVTGDDMRRYYDDHISEYRHEQQVRARQILFRLKEDAAEEEIAKARSEAEKVLA 297
Query: 289 SLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
+KGK F +LA + + + LG+F++ + + + KKG+ + ++
Sbjct: 298 EARKGKDFAELARKYSQDTATAKNGGDLGAFTRGQMLEPFSDAAFAM--KKGEISDLVET 355
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
G+ I V I P T SF+E + I ++ KA E E ++L + + + +
Sbjct: 356 PDGFHIIKVEEIIPEKTTSFEEARSGIEQAVKRQKAREAAYEKARKLLDQVYAKKDLAKS 415
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + + + + G + +L + P + Y+
Sbjct: 416 AEEQNMPVTGGDMWIAETDPLPGFQTPLADISRKLF------ELPEKDFSDIFDTPQGYL 469
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
Q+ P + ++V V+KD + + KA +L+ K + L
Sbjct: 470 IAQVTGIQPPQVPSFDKVKQRVEKDCRAERARVLAQQKAAELLDAARKA-NSLETAASGL 528
Query: 525 GASLLTTNQINRMDNENK--FFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKV 581
++ ++ +R + + QVF +E G ++V ++ ++
Sbjct: 529 KLAVRKSDWFSRHAPDKDLRLLRGGAVDQVFRLEENQPFPDSSLEFGNRFLVCQLLGRRL 588
Query: 582 GP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ + + LTQ + + + + + +
Sbjct: 589 PEGELEKVRADIVKRLTQQKQSMMWTAWLQEQRGKSKI 626
>gi|83644983|ref|YP_433418.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
2396]
gi|83633026|gb|ABC28993.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
2396]
Length = 628
Score = 240 bits (610), Expect = 7e-61, Method: Composition-based stats.
Identities = 111/637 (17%), Positives = 229/637 (35%), Gaps = 31/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++ +AK+ + ++ + F +G+ + +SG V SV + + S F +
Sbjct: 1 MLQNIRDNAQGVIAKVIVGLIVMTFAFFGVESIVGGLSGEPEVASVNGEPITKSQFERKF 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ +G + + L K LD ++ Q + G + I
Sbjct: 61 ERNRLQAIAGMGENYDPSKIDENKLRKTTLDEFITREVQLQAAREAGFAVSDATINNFIT 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P+ KD K+ ++ F+ L R G+ E+ + L + L+
Sbjct: 121 QWPMAQ-KDGKYDNNQFMEALRRIGMRPMEFRKELSDELLVGQLQSGIAQTSFVIGEELN 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R + RS Y LN V + S+A +++ KD + PE ++YI
Sbjct: 180 ELLRMERQTRSFSYYRLNAEDVAKDIEISDAEAEEYYNSNKDEFILPERIIVNYIELTRD 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAFQSLK 291
+ E+S++E+ YE+ K+++ E R ++ + A E Q LK
Sbjct: 240 ALVGRAEVSDEEVSERYEQEKKEFLPSEQRRASHILIETSDDVSDEQALAKAQEVEQKLK 299
Query: 292 KGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G F LA+E LG K + + GD + + +G
Sbjct: 300 DGGDFAALAKEFSSDLGSANDGGDLGYAQKGAFVEP--FEEKLFSMNVGDISEPVKTEYG 357
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y I ++++K S +E K I +++ KA E +L++ + +
Sbjct: 358 YHIIKLNDVKAVEMPSLEESKDRIVKELQEQKADSLFVEVNAKLKDITYTADDLAGPAGE 417
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ G G+ + + P Q F +D + + L + ++
Sbjct: 418 LGLTVQTSEPFSREG----GQGIFSGPQVVQEAFSADVIEDGHN-SQVIDLGREGSLVLR 472
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
KE +P+ ++ EV +K+ K + +++K+ ++V + + + K
Sbjct: 473 KKELLPSVPQQFAEVKEAIKQKLAVQKAKDTLAAKSEEMVAQLKSG--DLAPVSKGADGQ 530
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI---ENGLSYVVFKVTNSKVGPV 584
++N ++ D F P I E Y V + K
Sbjct: 531 QTGWVELN-DARRSQAGAADIARLAFKLPKPEEGKPVIEKFETNFGYAVIVLNEVKDNTE 589
Query: 585 Q----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
E+ + +++ + + ++ +
Sbjct: 590 DLSEAEQKTYRTFMASRNGQREYNDYNEKIQDAAEIE 626
>gi|330446589|ref|ZP_08310241.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490780|dbj|GAA04738.1| PPIC-type PPIASE domain protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 630
Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats.
Identities = 113/636 (17%), Positives = 239/636 (37%), Gaps = 34/636 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +R+ + + KI L ++ + F+ G+ L S V +++ F ++
Sbjct: 1 MMERLREGANSIWVKIILSLIILSFVFAGVGSYLASG-NEQVAAKVNDKEISQREFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + Q++G ++ K +LD +V+ ++Q ++GL +V
Sbjct: 60 QNQRNQMQQRLGDYFSTLMGNPEYVQQFRKSVLDRMVNDELIEQRATELGLGVSDAQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D F+++ + L R GI+ +++ + K + R + N
Sbjct: 120 AIIEMPAFQV-DGVFNNEQYNLTLRRAGISPEQFAESIRKDMLRQQFLSALQSSDFALNN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D+ ++ + R V + LN ++ ++++ K+ + P ++SYI
Sbjct: 179 EVDELRKLESQERVVRTLKLNLADFTNKVTVTDEEAKAYYDENKNQFTRPAQVKVSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-----ADEAFQSLKK 292
I+I++ E + Y ++K KY + E R V ++ + A+ LK
Sbjct: 239 SGKNLVNNIKITDQEAETYYNEHKSKYSTAEKRQVSHILVKGDSDASKAKAEALLAELKG 298
Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F +A++ L F K + D + ++ FSLAK GD + ++ SFGY
Sbjct: 299 GANFADVAKKSSDDTFSAKDGGKLDWFGKGVM-DPAFEEAAFSLAKPGDMSGLVKSSFGY 357
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I + I+ F EVK I +++ + +E+ + +L E + +
Sbjct: 358 HIILLDGIEEPKVKPFAEVKASIIAELQEQQVAEQFYKLQSKLAETAFESPDSLDAAAEA 417
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ ++ ++ K Q + D + + + V++
Sbjct: 418 VKAKVVTTGF----ISLQDEKGVLADQKVQEALQSPEVHDDGMNSDVIEIAPEHVVVVRV 473
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+S +V VK K ++ + KA+ ++ + D+ G S
Sbjct: 474 DDSREEAVLPFADVEAKVKTLLAQQKGEKQATEKADAIIAALREGKS---DVVAKDGLSF 530
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI----ENGLSYVVF---KVTNSKV 581
+ R + + F+ P +N + + KV N K
Sbjct: 531 SGDQTVTRSGPDA-----NVARVAFTLPKPKEGKVSYGMARDNNGNVEIIALDKVVNVKP 585
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ +F + + M + L + + L+ VT
Sbjct: 586 SADEVNSQFATQVENMFAQQDLAATLETLRESAKVT 621
>gi|26989028|ref|NP_744453.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
KT2440]
gi|24983852|gb|AAN67917.1|AE016424_3 peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas putida
KT2440]
Length = 623
Score = 239 bits (609), Expect = 9e-61, Method: Composition-based stats.
Identities = 100/635 (15%), Positives = 230/635 (36%), Gaps = 32/635 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ V + G + + S V Q + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L ++ L L+S L Q ED + I
Sbjct: 61 DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KFS + F + + G ++ + + + + G ++ +D
Sbjct: 121 QTPEFQV-DGKFSAERFDQVIRQMGYGRMQFREMLGEEMLIGQLRTGLAGSSFVTDQQVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + PA S+ + ++++ + +P+ I YI
Sbjct: 180 AFARLE--KQTRDFASLTFKADPAAVKVSDEEVKAHYDQHAKEFMSPDQVVIDYIELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSLKKG 293
+++++++EL+A+YEK + + + A+E Q L KG
Sbjct: 238 AFFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVTDAQAKARAEEIEQRLAKG 297
Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ F LA+E + + G F+ + D + +++ + G + + FGY +
Sbjct: 298 EDFAALAKEFSQDPGSANTGGDLGFAGPGVYDPAFEEAL-YKLQDGQVSAPVRTEFGYHL 356
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ ++ SF +K + +++ ++ + K+L++ + + + ++ +
Sbjct: 357 IKLLGVQAPEVPSFASLKDKLTRDLKMPLVEQRYVDASKQLQDAAYEASDLAQPAQDLNL 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
G + A + D + + L + + +++KE
Sbjct: 417 KVHTSAAFGREGGEGITANRAVV-----QAAFSEEVLDEGANSTAIELDPETTVVLRVKE 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
L+ V ++++ K E+ +KA++L+ + + G
Sbjct: 472 HRKPEQLPLDAVAKNIREHLAKEKATAELKAKADKLIGGLRDG--SIAAGSVHEGQGWKA 529
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-----GLSYVVFKVTNSKVGPV- 584
+ R + + +F K P+ S VV ++ G
Sbjct: 530 YEAVTRGE---DGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVNEGAAA 586
Query: 585 --QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK + YL + + L++ +T
Sbjct: 587 TDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621
>gi|207724194|ref|YP_002254592.1| peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum MolK2]
gi|206589405|emb|CAQ36367.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum
MolK2]
Length = 648
Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats.
Identities = 99/654 (15%), Positives = 231/654 (35%), Gaps = 44/654 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R R + L+++F F+ +G+ + GS VG + S
Sbjct: 1 MLDFVRTHRRLMFL-VLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDARV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ + Q +G + + + + +LD ++ + L +V I
Sbjct: 60 REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRMMVNEASRTNLSVADTKVRETIE 119
Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P D KF D ++ LA +G+ +++ L + V
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+D+ + R V ++L + + + +++ ++ + PE + Y++F
Sbjct: 180 LVDRLIEARDQQREVQALLLKPADYASKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
+ K+I ++ ++L+ Y++N ++ + E R ++ A A
Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299
Query: 287 --FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ K F +LA++ LG +K ++F+L + GD +
Sbjct: 300 VLAEVRKTPGNFAELAKKYSGDPGSAAQGGELGFLAKGATV-PQFDSALFALKQPGDISD 358
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
V+ FG+ I + +K S + VK ++ ++R A++K E
Sbjct: 359 VVQSDFGFHIIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVA 457
S+ ++ + K+ V ++ +++L +F D + V
Sbjct: 419 SLKPVADKLKLQVQTADNVTR---VPNPALGSSPINNDKVLKALFTDDVIKNHRNTQAVQ 475
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ + + ++ E PA +KL +V VK ++A + + +
Sbjct: 476 VGPTTLVAARVVEHRPASVKKLADVREQVKAKVLAEQSAALAKKAGEEKLAALKQSNS-- 533
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
+ GA I+R + + ++ + + + Y +++
Sbjct: 534 ---AEGFGA----AQMISRQ--QAQGTPPAALAAILRADATKLPATIGVDLGAQGYALYR 584
Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + L Q + L++ LK++ V ++ +I
Sbjct: 585 INKVLPPANVDPARRAADAQQLAQADGQADLNAYYEALKARSKVKINTTVIDAA 638
>gi|237803592|ref|ZP_04591177.1| periplasmic folding chaperone [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331025574|gb|EGI05630.1| periplasmic folding chaperone [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 627
Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats.
Identities = 98/640 (15%), Positives = 220/640 (34%), Gaps = 38/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ +SQ++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPALLDEKLLRESALKGLIDRKLLLQGASDAKFTFTDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+I ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQILQTPEFQV-DGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
++ R ++ D+ L + ++ + ++++ + +PE + YI
Sbjct: 180 AQVEAFARLE--KQTRDFASLTLPADTSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+++ +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDEQAKAKIEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L KG+ F LA+E + LG K + D + +++++L K + +
Sbjct: 298 LAKGEDFAALAKEFSQDPGSSSKGGDLGYAGKG-VYDPAFEEALYALNKDQ-VSQPVRTD 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + ++ +F +K + ++++ +K E K+LE+ + + + +
Sbjct: 356 FGWHLIKLLGVEAPSVPTFASLKGKLTDELKSQLVEQKFVEVTKQLEDSAFESSDLSQPA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + G + A I + S T+ L + +
Sbjct: 416 QDLGLKVQTTAPFGREGGEGLTANRAVI-----QAAFSPEVLEEGSNSSTLELDPETVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ KE + + L V ++ V +K L+ K G
Sbjct: 471 VRSKEHLQPQQLPLASVADKIRAQLVKEHATAAVKAKGEALLAGLRDGKIPLA--AKQDG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK 580
+ R + + +F P + K P + S+V+ ++
Sbjct: 529 REWKVMEAVTRSQ---EGVDPAVLQTLFRMPKPVGKDKPEFASITASDGSFVIVRLNGVN 585
Query: 581 ---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S+ +
Sbjct: 586 QAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625
>gi|119897859|ref|YP_933072.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
gi|119670272|emb|CAL94185.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
Length = 631
Score = 239 bits (608), Expect = 1e-60, Method: Composition-based stats.
Identities = 99/640 (15%), Positives = 219/640 (34%), Gaps = 40/640 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + +R R VA+I L +L +PF +GL G V V + + F +
Sbjct: 1 MFDAVRNNKR--VAQIILALLIIPFAFFGLDAYFKDGPGGGEVAVVDGAPITAAEFDRAL 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + ++G V+S S L + +L+ +VS L ++ D + ++ IA
Sbjct: 59 RERQDRLRNEMGGPVDSALLESPALRRAVLETMVSQRLLARYAADRHMVVTPQQLQETIA 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
FH ++ +FS + L + + + + + +
Sbjct: 119 AVEAFH-ENGQFSLQRYQDVLRAQNMTPAGFEARLAQDVRIQQLAASIGEAAFTPAASAK 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E R V + ++ +++ + P + Y++ D
Sbjct: 178 RFLLAQLEEREVRELRFPASRYLGEVKLADGAAQAFYDANAAGFEQPARLKAEYVVLDEA 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
K++++S++E++A Y+ N ++ PE R ++ A EA + K A
Sbjct: 238 ALAKQVKVSDEEVRAFYDGNPGRFGQPEERRARHILIQVDAGAPEAEVAKAKAAIDEIAA 297
Query: 301 -----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
++ G + LG F + + + KG PV+
Sbjct: 298 TLAKDPGRFEALAKASSQDSGSAARGGDLGFFGRGAMVKPFEDAA--FGQAKGVVGPVVR 355
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMD 402
FG+ I V++IKP+ T S V+ +I +++R A + E S+
Sbjct: 356 SDFGFHIIQVTDIKPATTRSLDSVRGEIVDELRKQAAGRRFAEVANDFSNMVYEQPDSLK 415
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
++ + + V V + + + L +
Sbjct: 416 PVAEQFGLEVRTSDWVQRGADAVGSVSSSKL----VDALFAEDASKNGRNTQAIELGPNA 471
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
++ PA+ ++V ++++ + + A+ + + + + K +
Sbjct: 472 LAAGRVAAFEPAQRLPFDQVRAEIEQQLRNEEAAKLATERGSAALAALEKG--------E 523
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
G ++ R + SG + + G Y V+++
Sbjct: 524 AAGGEFSAARKLQRGAPALPAAAMQAVFAAPSGKLPAHVGVALPEG-GYAVYRIDAVNRP 582
Query: 583 PVQEKD----KFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + D S ++M+ + S +A L+ +Y V +
Sbjct: 583 VLADDDPRIAAVASQYSRMVAERDFGSFLAGLRERYKVEI 622
>gi|83858361|ref|ZP_00951883.1| rotamase family protein [Oceanicaulis alexandrii HTCC2633]
gi|83853184|gb|EAP91036.1| rotamase family protein [Oceanicaulis alexandrii HTCC2633]
Length = 635
Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats.
Identities = 123/637 (19%), Positives = 242/637 (37%), Gaps = 16/637 (2%)
Query: 1 MLEIIRKASRT-WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML +IR +R+ + + + +L F +WG+SD S+ V VG Q V S +
Sbjct: 1 MLSLIRSLARSPIIGGMIIALLIAAFALWGVSDIFSGGGTSALV--VGPQTVSASEVQRN 58
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
++++L I Q+ + E+A +GL ++ L++ +D + +GL ++ +
Sbjct: 59 YERQLFQI-QRDNPQITREQADQMGLGDSVVRRLIAETAVDAKADQMGLTISDDTLFETL 117
Query: 120 ARSPLFHGK-DNKFSHDVFVSRLARE----GINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
P F N+F + S L + E+++ T L R V +GG+R
Sbjct: 118 RSIPAFQNPFTNQFDPGTYASILRENGYRGSMAERQFESDITSELRRAQFVAAALGGVRA 177
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
++ + + E RS+ + L V P + LT + + + E +R++
Sbjct: 178 PDIYAEIRAAYENERRSLRALFLRPVLVETPEAPDDETLTAFIGENARIFERAEQRRLTL 237
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE--QLVFPNQKEADEAFQSLKK 292
+ + + +E+S ++LQA Y+ + + T Q P+Q+ A+ A L
Sbjct: 238 VRITPTDLLRDVEVSEEDLQALYDYRLQNGELADPATRSLTQWPAPDQQTAETAAARLGA 297
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
G+ + E G ++L +PD +A+ F + + G+ +
Sbjct: 298 GESVASVVAELGLGDE-VALADVEAYQVPDAQIAERAFQMQAGEL--AAVESQLGWRVLR 354
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
+ T F V+ ++ ++ A + + EE G +++E +R + +
Sbjct: 355 IDAANDPDTPDFAAVESELRTELARDTAEGMMLDALGVFEEARGNGATLEEAAREAGLFA 414
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ V G + + +L F + D DG Y V++ E
Sbjct: 415 ERIDFVGANGYSPDREPALTLLQNPDILSAAFAAQQGFATDLEGYGEDGGYFVVRVDEIE 474
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
PAR +L+EV D + W +T + + + G+ I +LGA +
Sbjct: 475 PARLYELDEVREDASRFWVMRETDNRLQEVVDDVQARLD-AGETLDAIAASLGAGARVES 533
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-VQEKDKFI 591
+ + F ++Q F P +N + + V
Sbjct: 534 AVLGREETAGPFNAQLVAQAFRQPEGGRFVSRADNQTTRALVLVDEVIAAEGGAVTQAQR 593
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ +T + D V L + Y V + +LI + L
Sbjct: 594 NEMTGELRDDATQIVTNALINAYDVRQNQDLIDQALG 630
>gi|83745917|ref|ZP_00942974.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
gi|207743054|ref|YP_002259446.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum
IPO1609]
gi|83727607|gb|EAP74728.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
gi|206594451|emb|CAQ61378.1| peptidyl-prolyl cis-trans isomerase protein [Ralstonia solanacearum
IPO1609]
Length = 648
Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats.
Identities = 98/654 (14%), Positives = 232/654 (35%), Gaps = 44/654 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R R + L+++F F+ +G+ + GS VG + S
Sbjct: 1 MLDFVRTHRRLMFL-VLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDARV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ + Q +G + + + + +LD ++ + L +V I
Sbjct: 60 REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRMMVNEASRTNLSVADTKVRETIE 119
Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P D KF D ++ LA +G+ +++ L + V
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSSAFVPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+D+ + R V ++L + + + +++ ++ + PE + Y++F
Sbjct: 180 LVDRLIEARDQQREVQALLLKPADYASKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
+ K+I ++ ++L+ Y++N ++ + E R ++ A A
Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299
Query: 287 --FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ K F +LA++ + LG +K ++F+L + GD +
Sbjct: 300 VLAEVRKTPGNFAELAKKYSEDPGSAAQGGELGFLAKGATV-PQFESALFALKQPGDISD 358
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
V+ FG+ + + +K S + VK ++ ++R A++K E
Sbjct: 359 VVQSDFGFHVIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVA 457
S+ ++ + K+ V ++ +++L +F D + V
Sbjct: 419 SLKPVADKLKLQVQTADNVTR---VPNPALGSSPINNDKVLKALFTDDVIKNHRNTQAVQ 475
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ + + ++ E PA +KL +V VK ++A + + +
Sbjct: 476 VGPTTLVAARVVEHRPASVKKLADVREQVKAKVLAEQSAALAKKAGEEKLAALKQSNS-- 533
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
+ GA I+R + + ++ + + + Y +++
Sbjct: 534 ---AEGFGA----AQMISRQ--QAQGTPPAALAAILRADATKLPATIGVDLGAQGYALYR 584
Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + L Q + L++ LK++ V ++ +I
Sbjct: 585 INKVLPPANVDPARRAADAQQLAQADGQADLNAYYEALKARSKVKINTTVIDAA 638
>gi|242277701|ref|YP_002989830.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
salexigens DSM 2638]
gi|242120595|gb|ACS78291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
salexigens DSM 2638]
Length = 633
Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats.
Identities = 108/645 (16%), Positives = 237/645 (36%), Gaps = 33/645 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++I+R+ +++W KI ++ F+ F+ + + V Q VP F+ +
Sbjct: 1 MMDILRQNAQSWGIKIAFGIIIAVFIFA-FGAGGFNGNTDPVIAYVNDQPVPTQEFMQVY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + ++S++ +S K +L+ LVS L+ E +GL + + I+
Sbjct: 60 RETAEALRAQ-NPNLDSDQLQSPEFKKAVLEQLVSQKLLEAEAEKLGLSVSNSELSYSIS 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F KD KF +++ + L ++ + + + + ++P+
Sbjct: 119 KIPAFADKDGKFDMNLYQAFLQSRAMSAATFENDMRNSALISKLQEYVTMPVKPTEADAR 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
E +DY ++ S+ + +++ D + P + YI F
Sbjct: 179 ALFDSAAEKVQIDYYYVSGADFVKNIKISDKQIEDFYKANPDKFTIPARSVVKYIAFTPE 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQKEADEAFQ 288
E ++ +E++A YE NKE + + V +K+ +
Sbjct: 239 ELSINETVTPEEIKAYYEANKETFQQEAQVNARHILITVDENASDKDVAAAEKKIKKVLA 298
Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
K G+ F +LA++ S LG F + + + KKG+ + +
Sbjct: 299 KAKSGQDFGKLAKKYSEGPSSSKGGELGWFGRGAMVKP--FEEAAFALKKGEISEPVRTR 356
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + +++ + +VK +I + + KA++ + + + LA G +D++S
Sbjct: 357 FGWHLIKIDDVREAGQKDIDQVKDEINSLIAQEKAADSITDKLDHAIDLLASGMKLDKVS 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
I + L + D P++ DG Y+
Sbjct: 417 EELGIAFKKSEQATVENLSRAFGMTESAAQTIIALPKGNATDMPVAI-------DGGYIL 469
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ + +P L++ D++ + +KA L+ + S E K K +
Sbjct: 470 VEKEADVPPSLSPLKDQKQDIESFLSQQQAMNLAKAKALALMGQLSNE-KTEAAALKVIK 528
Query: 526 ASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
L T+ R + + E ++V +V
Sbjct: 529 KDLKTSEPFGRDGFVPGLGMNPKLAQAALAAKKDQWMSEVFELPGGFIVARVDERIPPKE 588
Query: 585 Q----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT-VHDNLIQ 624
+ +KD + + Q ++ + + L+S+ V V +L+
Sbjct: 589 EAWAAQKDMVMDAIFQQRANEVFGAFLNELRSKAKVEYVRKDLLN 633
>gi|167032914|ref|YP_001668145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
GB-1]
gi|166859402|gb|ABY97809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
GB-1]
Length = 623
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 103/635 (16%), Positives = 228/635 (35%), Gaps = 32/635 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ V + G + + S V Q + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L ++ L L+S L Q ED + I
Sbjct: 61 DMQRRQLMQQLGKDFDPALLDDKLLREEALKGLISRKLLLQGAEDAKFAFSEAALDQVIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KFS D F + + G ++ + + + + G ++ +D
Sbjct: 121 QTPEFQV-DGKFSADRFDQVIRQMGYGRMQFREMLAEEMLIGQLRTGLAGSSFVTDQQVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + PA S + ++++ + +P+ I YI
Sbjct: 180 AFARLE--KQTRDFASLTFKADPAAVKVSEEEVKAHYDQHAKEFMSPDQVVIDYIELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSLKKG 293
+++++++EL+A+YEK + + + A+E Q L KG
Sbjct: 238 VFFDQVKVTDEELKAQYEKEIANLAEQRHAAHILIEVNDKVTEAQAKARAEEIEQRLAKG 297
Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ F LA+E + + G F+ + D + D++ + G + + FGY +
Sbjct: 298 EDFAALAKEFSQDPGSANNGGDLGFAGPGVYDPAFEDAL-YKLQDGQVSTPVRTEFGYHL 356
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ ++ SF +K + ++I ++ + K+L++ + + + ++ +
Sbjct: 357 IKLLGVQAPEVPSFASLKDKLTRDLKIPLVEQRYVDASKQLQDAAYEASDLAQPAQDLNL 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
G + + + D + + L + + +++KE
Sbjct: 417 KVHTSAAFGREGGEGITANRSVV-----QAAFSEEVLDEGANSTAIELDPETTVVLRVKE 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
LE V ++ + K E+ +KA++L+ + + G
Sbjct: 472 HRKPEQLPLEAVAKNISEHLAKEKATAELKAKADKLIAGLRDG--SIAAGSVHEGQGWKA 529
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-----GLSYVVFKVTNSKVGP-- 583
+ R + + +F K P+ S VV ++ G
Sbjct: 530 YEAVTRGE---DGIDPAELQALFRLGKPQAKDKPVYGSVVLRDGSLVVLQLKGVNEGATA 586
Query: 584 -VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK + YL + + L++ +T
Sbjct: 587 TDEEKQQIRRYLASRAGQQDFAAYRKQLEANADIT 621
>gi|260768943|ref|ZP_05877877.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio furnissii CIP
102972]
gi|260616973|gb|EEX42158.1| peptidyl-prolyl cis-trans isomerase PpiD [Vibrio furnissii CIP
102972]
Length = 619
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 119/628 (18%), Positives = 247/628 (39%), Gaps = 26/628 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGSN-NAAAKVGGTEIGRGEFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ K +LD +++ LDQ + +GL ++
Sbjct: 60 QNERNRMQSQLGDYFSNLLADPEYVASFRKSVLDRMINDLLLDQHAQALGLRVSDTQIRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF +++ S L R G + + ++ + L R ++ G
Sbjct: 120 MILDMPQFQT-DGKFDQEIYQSALRRAGFSPDSFAEYMRRDLVRNQLLSALQGSEFTLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + R + I L+ + S+ + Q++++ + Y PE ++SYI
Sbjct: 179 EVEAQGELITQTRDIRTITLSPAEFAKSIELSDDEIEQYYKQNSERYTRPEQVKLSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA--DEAFQSLKKGKK 295
+ + I IS+++ + YE + +KY S E R V ++ E L G
Sbjct: 239 SAEQLKNAITISDEQAKQYYESHMDKYSSAEQRQVSHILIQGDDEKAAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + SLG + + D + + F+L K GD + ++ FGY I
Sbjct: 299 FATLAKEKSQDIGSAEEGGSLGWIEHDTM-DPAFESAAFALKKAGDVSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ ++K + EV DI ++++ +A +K E LE+ + + K +
Sbjct: 358 KLDDVKAPVAKPYAEVAADIKSELKDQQAIDKFYELQTELEKVAFESPDSLDDA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + K + + + + + + V+++ES
Sbjct: 416 SAHIVSTDFVSEQQLPKALNN--ADVLKAIQSPEVKEDGLNSEAIEVAPEHVVVVRVEES 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L EV V +K ++ + ANQLV K + + +
Sbjct: 474 RPEMVLPLNEVKDQVVAQLSKLKGEQQALALANQLVDGLKKGDLSL---LEQHQLAFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-GLSYVVFKVTNSKVGPVQEK-DK 589
N I+R + + V ++ + VV ++ + + ++
Sbjct: 531 NMIDRSSPLAGT-----VYAMAKPADGAVTYAQAKDFDGNIVVVELDKVEAKVNPQYNEQ 585
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L +M + L V++ L+ +
Sbjct: 586 IGAQLARMGVQQDLAGVLSVLRQNADIK 613
>gi|229591358|ref|YP_002873477.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25]
gi|229363224|emb|CAY50307.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens SBW25]
Length = 624
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 94/636 (14%), Positives = 226/636 (35%), Gaps = 33/636 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL-FSVSGSSTVVSVGRQKVPFSSFINS 59
ML+ IR S+ W+AK + ++ G+ S + V V +++ + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAIFQASGNSKQDVAKVNGEEITQTELSQA 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ + Q++G ++ L + L +L+ L Q D + I
Sbjct: 61 VDMQRRQLMQQLGKDFDASLLDEKLLREAALKSLIDRKLLLQGAADSKFGFSEAALDQVI 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
++P F D KF+ + F + + G + ++ T+ + V G ++ +
Sbjct: 121 LQTPEFQV-DGKFNAERFDQVIRQLGYSRLQFRQMLTQEMLIGQVRAGIAGSGFVTDSEV 179
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
R ++ D+ +N + PA ++ + +++++ + P+ I Y+
Sbjct: 180 LAFARLE--KQTRDFATVNIKANPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKK 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSLKK 292
++ + +DELQA Y+K + + + + +E L K
Sbjct: 238 SSFFDQVAVKDDELQAAYQKETANLAEQRRAAHILIEVNDKVTDAQAKAKIEEIQARLAK 297
Query: 293 GKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
G+KF LA+E + S G F+ + D ++++L+K + + +FG+
Sbjct: 298 GEKFEALAKEFSQDPGSASNGGDLGFAGPGVYDPDFETALYALSKDQ-VSAPVRSTFGWH 356
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + ++ +F +K + +++ + ++ E K+LE+ + + + + K
Sbjct: 357 LIKLLGVEAPQVPTFASLKDKLTKELKTQQVEQRFVEATKQLEDAAFEASDLAQPASDLK 416
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ G + A + D + + L + + ++ K
Sbjct: 417 LTVHTSAPFGREGGEGVAANRAVV-----TAAFSPEVLDEGANSTAIELDPETIIVLRAK 471
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
E + LE V ++ + + + A++L+ G +
Sbjct: 472 EHLKPAQLPLESVAAAIRTQMAKERASAAAKTHADELIASLRDGKTPLNQ--PVDGQAWK 529
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-----GLSYVVFKVTNSK---V 581
T R + + +F P K P S V+ ++
Sbjct: 530 VTEAATRSQ---ETIDPAVLQALFRMPKPAAKDKPTFTTVTLADGSLVIVRLNGVNEAAA 586
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK ++ +L + + + L+++ +
Sbjct: 587 PTDEEKAQYRRFLASRVGQQDFAAYRKQLETKADIK 622
>gi|253999166|ref|YP_003051229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
SIP3-4]
gi|253985845|gb|ACT50702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
SIP3-4]
Length = 632
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 100/652 (15%), Positives = 221/652 (33%), Gaps = 41/652 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S++W+AK+ L + +PF I G+ L S ++ V + + + NS
Sbjct: 1 MLEAIRERSKSWLAKLILAAVTIPFAIVGIDTYLRDAGSSVSIAKVDGESISVQEYNNSM 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + + + + ILD L+ L+ + + I
Sbjct: 61 QRLRNQL--QAEGKTDPSVLEQPDVKQSILDRLIINRLLNNAVTKSHFAIGDAALSDHII 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F ++ KFS + + L + ++ L +
Sbjct: 119 TLPEFQ-ENGKFSQETYDRLLTSNRLTPSQFESTMRTDLLVQQAREGLAALAYLPEPISK 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + R V + A + +++++KD ++ PE ++ ++LF +
Sbjct: 178 QTLATEHQQREVTIAEIKTADFLDQVKVDEAQIKAYYDQHKDKFKVPEQVKLEFVLFSSN 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290
K+++S++E++ Y++N K+ E R ++ A +
Sbjct: 238 NLIPKVQVSDEEVKKYYDENAAKFQGNEQRRASHILISFGVSATTEAKQQAKKQAEEVLA 297
Query: 291 ---KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+ +F LA++ K LGSF + + + K G+ + ++
Sbjct: 298 QVRQHPDQFADLAKKYSKDPGSAEKGGDLGSFGRGMMVKP--FEDAVFSMKPGEISNLVE 355
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
FGY I ++ I + F K I ++ KA E + + +
Sbjct: 356 SEFGYHIIKLTEIT-GQSQGFDAAKPQIKAELLYQKAIALFAEQAESFNNMVYEQS--TS 412
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ + + D+ K + K + V + +
Sbjct: 413 LKPVADAFGLQVQHTDWISHADGAKYFKS--DKLMNMVFAEEVLKDKRNTEAVEVSPNNL 470
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ ++ + PA R EEV ++ K A+ K + + + K+
Sbjct: 471 ISARVVDYKPAAPRSYEEVKAGIEGVLKAELAAKLAIKKGEAALADLRQG--------KS 522
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSK- 580
+ I+R + + ++ F V + + ++ Y++ KV
Sbjct: 523 PQLDWIPPVTIDRSN--AQGLTDVAMNNAFKIDVSKLPAYAGVADSNKGYLLIKVNGVNT 580
Query: 581 -VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + + + + + LK + +TV+ L+ G++
Sbjct: 581 LPANEDADKASARELQAALASEYVAAYVKSLKDKSKITVNSRLLLSSGTGDQ 632
>gi|77459915|ref|YP_349422.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
fluorescens Pf0-1]
gi|77383918|gb|ABA75431.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas fluorescens Pf0-1]
Length = 623
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 91/636 (14%), Positives = 220/636 (34%), Gaps = 34/636 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + V+ + G + + + V +++ + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVALMALTGFDAIFQATTHKNEAAKVNGEEISQNELSQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G ++ L + L L+ L Q E + I
Sbjct: 61 DMQRRQLMQQLGKDFDASLLDEKMLRESALKGLIDRKLLLQGAEQSKFAFSEAALDQVIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KFS D F + + G + ++ + + + G ++ +
Sbjct: 121 QTPEFQV-DGKFSSDRFDQVIRQLGYSRMQFRQMLAQEMLIGQLRAGVAGSGFVTDAQVL 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ LN + P+ ++ + +++++ + P+ I Y+
Sbjct: 180 AFARLE--KQTRDFATLNIKADPSAVKLTDDEVKAYYDEHAKEFMTPDQVVIDYLELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-------EADEAFQSLKKG 293
++ + +++LQA Y+K + ++ + +E L KG
Sbjct: 238 SFFDQVAVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKTTEAQAKAKIEEVQARLAKG 297
Query: 294 KKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+KF LA+E + + LG + D + +++SL K + + FG+
Sbjct: 298 EKFEALAKEFSQDPGSANNGGDLGYAGPG-VYDPAFEKALYSLNKDQ-VSEPVRTDFGFH 355
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + ++ + +K + +++ + ++ E K+LE+ + + + ++ K
Sbjct: 356 LIKLLGVEAPEVPTLASLKDKLTRELKTQQVEQRFVEATKQLEDSSFEASDLAQPAQDLK 415
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ G + A + + + + L + + ++ K
Sbjct: 416 LTVHTSKPFGREGGEGVAANRAVV-----TAAFSTEVLEEGANSTAIELDPETVIVLRAK 470
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
E + LE V ++ + + A QL+ G S
Sbjct: 471 EHLKPAQLPLESVAAAIRTQLTKEHASAAAKTHAEQLIASLRDGKTPLDKAVD--GQSWK 528
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-----GLSYVVFKVTNSK---V 581
T NR + + +F P K P S + ++
Sbjct: 529 VTEAANRAQ---EGVDPAVLQALFRMPKPAAKDKPTFTSVTLADGSLTIVRLNGVNEAAA 585
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK ++ +L + + + L+++ +
Sbjct: 586 PTDEEKAQYRRFLASRVGQQDFAAYRKQLEAEADIK 621
>gi|212703745|ref|ZP_03311873.1| hypothetical protein DESPIG_01793 [Desulfovibrio piger ATCC 29098]
gi|212672827|gb|EEB33310.1| hypothetical protein DESPIG_01793 [Desulfovibrio piger ATCC 29098]
Length = 650
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 98/659 (14%), Positives = 225/659 (34%), Gaps = 44/659 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++++ K+ ++ + F+ WG+ L S+ V V + + F ++
Sbjct: 1 MLDYIRSNAQSFGVKVAFAIIILVFMFWGVGS-LTDGGSSNVVAKVNGEAITAQQFEQAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + + E L +++L+ L+S + Q +G+ + ++
Sbjct: 60 QRA-AEYAMRNDPSLTREALVQQKLGRQVLNELISAQLIRQEAARVGMTVSPEEMHYVVS 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F KF + + + + ++ EY + R V+ G +
Sbjct: 119 KLPAFQDAQGKFDPEAYKRAIEAQRMSVAEYEQGLADSILRDKVMRTVAGSAWAAGGEAR 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ F + R+V+Y+ L A P+ L W+E +K + + Y+
Sbjct: 179 KYYDFLTQQRAVEYLYLPAADFAASVKPTEEELGAWYEAHKAELASQPRVEVEYVAVAPE 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----------NQKEADEAFQS 289
+ +S + YE NK+++ PE V ++ P E +S
Sbjct: 239 SLVRPESVSAEAALKWYEANKQRFRQPEQVKVAHILVPLAENAPEAAVKQAMEKAARIRS 298
Query: 290 LKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ F +A+ + LG + + + G + + F
Sbjct: 299 EAEKGDFAAVADANNGPNAAGPGGELGWIQRGQTVKPFEDAA--WALQPGQISEPVRSQF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G I + + K + F EV+ ++ + + EKV + L + E +
Sbjct: 357 GLHIIKMEDRKDASVQPFAEVEAEVRATLAKQEGVEKVNDVLDSLIGDNINNRPLQESAA 416
Query: 407 REKI------VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
R L + G + + A+ +++ + D + D
Sbjct: 417 RAGSYKDADGKDQPLLKAERTGLVGQAELQKALGISDEMAASLMKAPANSPVDTALEAGD 476
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
Y+ V++ S P+ L++ V K K + KA L + D
Sbjct: 477 -RYLVVRVLTSEPSTTPSLDQARDRVMKALVAEKALQAAMGKATALRKAMTDGQLPAEDA 535
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEM-------VKCFPIENGLSYV 572
+ + + + R F ++Q +F + V + +
Sbjct: 536 AR------VQSADLTRDGALAGFVPNPVMNQVIFRAAPQTWIDQAFSVYEQEDSSKCGAL 589
Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMN----KDLLDSVIAYLKSQYSVTV-HDNLIQRY 626
+ +VT + + LT+++ + + + + L+ + + V + +++
Sbjct: 590 LCRVTAVEQPKADGWAGMENLLTELVQRKRVEGMYQTFMRMLEQKAKIEVYNSRVLESA 648
>gi|308050304|ref|YP_003913870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica
DSM 9799]
gi|307632494|gb|ADN76796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ferrimonas balearica
DSM 9799]
Length = 624
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 97/632 (15%), Positives = 222/632 (35%), Gaps = 36/632 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ AKI L + + F + G+ L + V +++ ++
Sbjct: 1 MLEKIREGSQGVAAKIILGAVILSFALTGVYSYL-GTNSEMLAAEVNGEEITRYDLDQAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + +S + GL + +LD L++ +DQ + D+GL ++
Sbjct: 60 QNEQARMRAQLGEMFDSLSADPTYMAGLRQSVLDRLIAERLIDQKVADLGLRVSDDQIQQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF + + + L + ++ + D + +SR +V +G ++
Sbjct: 120 AIVAMPEFQV-DGKFDNARYQAVLRQNNLSGVQLRDMLRRDMSRQQLVVGLLGSEFVTDA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R + Y++++ A + S++ ++ +++ + + PE + Y+
Sbjct: 179 EAQALTALQQQTRDLRYLLVSQADYNAGIEVSDSEISDFYQANQARFATPEEVSVEYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-------EADEAFQSL 290
V + + ++++E +A Y+ Y PE R ++F
Sbjct: 239 AVSDLAGDVSVTDEEAKAFYDSQANAYQQPERRLAAHMLFEGDDAQARAEAALARVRAGE 298
Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ +++ + + L + + D+ ++G+ + VI +GY I
Sbjct: 299 AFAAVAAEASDDTFTAENGGELDWMTPGQM--EPAFDAALFALQEGETSDVIKTEYGYQI 356
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREK 409
+ I+ + F EVK I ++ KA + ++L + S+ E +
Sbjct: 357 VNAKKIEAATQRPFDEVKASIIATLQADKAQTEFYGLQQKLADVSFQVPDSLVETAEAVG 416
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ A+ V + +G + +++K
Sbjct: 417 GEVKTTEMFSRNNAPAPMDNPRALA-----AAFSDSVLLDGMNSEVVQIDNGHILVLRVK 471
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
A LE+V ++ T K +++ ++A + + + I
Sbjct: 472 AHQAAGTETLEQVKERIRAQLVTEKASDKAMTEAAAIEAAWQAGTEPTDVIA-------- 523
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVG--PV 584
+ R + + VF+ V + + G
Sbjct: 524 -VAGVGRFGQPD--LDPTLVQSVFTMAKPVDGSVFSHFRLPSGDIAIVALDKVTDGSAEA 580
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ L Q M + S+I L++ +
Sbjct: 581 ELVGALKGRLAQQMGEADYRSLIDSLRADAEI 612
>gi|315180639|gb|ADT87553.1| peptidyl-prolyl cis-trans isomerase D [Vibrio furnissii NCTC 11218]
Length = 619
Score = 238 bits (606), Expect = 2e-60, Method: Composition-based stats.
Identities = 119/628 (18%), Positives = 248/628 (39%), Gaps = 26/628 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGSN-NAAAKVGGTEIGRGEFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ K +LD +++ LDQ + +GL ++
Sbjct: 60 QNERNRMQSQLGDYFSNLLADPEYVASFRKSVLDRMINDLLLDQHAQALGLRVSDTQIRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF +++ S L R G + + ++ + L R ++ G
Sbjct: 120 MILDMPQFQT-DGKFDQEIYQSALRRAGFSPDSFAEYMRRDLVRNQLLSALQGSEFTLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + R + I L+ + S+ + Q++++ + Y PE ++SYI
Sbjct: 179 EVEAQGELITQTRDIRTITLSPAEFAKSIELSDDEIEQYYKQNSERYTRPEQVKLSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA--DEAFQSLKKGKK 295
+ + I IS+++ + YE + +KY S E R V ++ E L G
Sbjct: 239 SAEQLKNAITISDEQAKQYYESHMDKYSSAEQRQVSHILIQGDDEKAAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + SLG + + D + + F+L K GD + ++ FGY I
Sbjct: 299 FATLAKEKSQDIGSAEEGGSLGWIEHDTM-DPAFESAAFALKKAGDVSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ ++K + EV DI ++++ +A +K E LE+ + + K +
Sbjct: 358 KLDDVKAPVAKPYAEVAADIKSELKDQQAIDKFYELQTELEKVAFESPDSLDDA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + K + + + + + + V+++ES
Sbjct: 416 SAHIVSTDFVSEQQLPKALNN--ADVLKAIQSPEVKEDGLNSEAIEVAPEHVVVVRVEES 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L EV V +K ++ + A+QLV +K + + +
Sbjct: 474 RPEMVLPLNEVKDQVVAQLSKLKGEQQALALASQLVDGLNKGDLSL---LEQHQLAFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-GLSYVVFKVTNSKVG-PVQEKDK 589
N I+R + + V ++ + VV ++ + Q ++
Sbjct: 531 NMIDRSSPLAGT-----VYAMAKPADGAVTYAQAKDFDGNIVVVELDKVEAKVNPQYNEQ 585
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L +M + L V++ L+ +
Sbjct: 586 IGAQLARMGVQQDLAGVLSVLRQNADIK 613
>gi|82703453|ref|YP_413019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
multiformis ATCC 25196]
gi|82411518|gb|ABB75627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
multiformis ATCC 25196]
Length = 626
Score = 238 bits (605), Expect = 2e-60, Method: Composition-based stats.
Identities = 99/646 (15%), Positives = 234/646 (36%), Gaps = 41/646 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + + K R + +I L + +PF+ WG+ + V +K+ F +
Sbjct: 1 MFDFVNKKRR--IVQIILGLATLPFVFWGVESY-RNADAGDHVALAAGEKISRQEFEQAL 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + +G + + IL+ L+ L Q +GL ++ I
Sbjct: 58 RNQQENMRATLGENFSPALLEKPEVRAAILEGLIQQRLLRQEASRVGLGVADAQLIEMIQ 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
LF +D FS + L +G+N + + + L R +V F S+ + +
Sbjct: 118 NIDLFQ-EDGNFSKQRYEEWLRNQGMNARAFEARLRQDLMRQQLVDPFSKNAFISHSVAE 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R E R V + + A P N + ++E +K ++ PE R+ Y++ +
Sbjct: 177 RILRLGDEKREVRVVQIQPEQFLANVKPGNDAIRAYYEAHKAEFQVPEQARVEYVVLSMD 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQS 289
+K +++ DE A YE++K ++ PE R ++ A + +
Sbjct: 237 ALAEKAQVTADEALAYYEEHKHEFGQPEERRASHILISAPASASDRATARAKAEELLAEV 296
Query: 290 LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
K ++F +LA++ + LG F++ + + K G+ + ++
Sbjct: 297 RKSPQRFTELAKQHSQDPGSAPTGGDLGFFARNMMTKS--FEDAVFRMKPGEISDIVETE 354
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEI 404
G+ I ++ + S +EVKK + ++R KA++ E S+ +
Sbjct: 355 HGFHIILLAEARGGKQASLEEVKKQVEQEVRKQKAAKTFGEMADSFSNMVYEQSDSLKPV 414
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + + + + A + + + + +
Sbjct: 415 AESLGLTIQESGWIRMNSDEPPYLNNARLLQ----AIFSEDAIKDKRNTEAIEVSSNTLV 470
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
++ + PA ++E+ + + + ++ + + + + K
Sbjct: 471 SARVVDYKPAATPSVDELRDKIAALVAREEASRAAINEGKEQLAQLQQG--------KTA 522
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNS--- 579
Q++R E + F + + +F + + + + +V
Sbjct: 523 PIKWTPGQQVSR--RERQGFDNETVQAIFRAETNHLPAYSGLPNAQGGFTLIRVDRVIES 580
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +E+ F L+Q+ ++ S + +K +Y V+V +++
Sbjct: 581 RPPSAEERKTFAGQLSQLFAQEEFSSYLDGIKKRYDVSVRSESLEK 626
>gi|120554754|ref|YP_959105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
aquaeolei VT8]
gi|120324603|gb|ABM18918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
aquaeolei VT8]
Length = 617
Score = 238 bits (605), Expect = 3e-60, Method: Composition-based stats.
Identities = 114/632 (18%), Positives = 239/632 (37%), Gaps = 28/632 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR +++ +AK+ + +L + IWG+ + +G V +V Q + F+ +
Sbjct: 1 MLQDIRDNAQSTIAKVIVGLLIISLSIWGMDAIIGGFTGEPEVATVNGQDITEREFLRTV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E ++ + + + +LD L+ A L Q + GLE + I
Sbjct: 61 QMESQQRLMQM-ENRDQSLLDEDQIRRDVLDALIREAVLTQDAQSQGLELTDADIDSLIT 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F D +F+ D FV+ + G+ E+ + K + +
Sbjct: 120 QMPQFQV-DGQFNRDRFVATVRNVGMGVAEFRESIRKNYVVNQIRAAIAQTGVVAPENAA 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R + L+ V D + A + ++++ + +R PE +YI
Sbjct: 179 HLLAIQNQTRDFRVLTLDGSSVQDQVDVTEADVQAYYDENLNQFRQPEQVDAAYITLSQG 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV---FPNQKEADEAFQSLKKGKKFI 297
+ IE++ DEL+ YE+ E+Y E R LV Q Q L+KG+ F
Sbjct: 239 ALAESIEVAEDELRTYYEERAEEYAREERRAAHILVEAGDEGQATLATIQQRLEKGESFA 298
Query: 298 QLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LAEE G F+ + D + D++ ++G+ + + SFG + +
Sbjct: 299 VLAEEYSVDTVSAQEGGDLGFAGRGVYDEAFEDAL-FGLEEGEVSGPVETSFGLHLIKLE 357
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
++ S +F E+++D+ ++ TKASE+ E +L + + + +
Sbjct: 358 EVRRSDVPAFDELREDLRLELARTKASERFAEVRSQLADAAYAADDLAGPAEELGLEIRV 417
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ V G + + + + D + +++E
Sbjct: 418 VEGVSRDGGAAPFDHAGLVRQ-----LFSEDVLEGGYNTELIDVGDNVSVVARVREYHEP 472
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R L +V ++++ + +T + ++++ ++LV + + G + ++G + Q
Sbjct: 473 RQLALADVEPEIRRILERTETRDALAARVDELVAQL-ESGTSADELG------VGEWQQF 525
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIE---NGLSYVVFKVTNSKVGPVQ----EK 587
+ +VFS + V +T G V E
Sbjct: 526 EDQGRSVSGLSPRVVQEVFSMARPDGDSPTVGRAVTADQAAVIVLTGVNEGEVDQEGAEY 585
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
+ + +L Q+ + + YL++ V +
Sbjct: 586 QQLMRFLAQLEGQREYTAYQQYLRNTAEVERN 617
>gi|94502167|ref|ZP_01308665.1| peptidyl-prolyl cis-trans isomerase D [Oceanobacter sp. RED65]
gi|94425692|gb|EAT10702.1| peptidyl-prolyl cis-trans isomerase D [Oceanobacter sp. RED65]
Length = 608
Score = 238 bits (605), Expect = 3e-60, Method: Composition-based stats.
Identities = 92/627 (14%), Positives = 217/627 (34%), Gaps = 27/627 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ A+I + ++ + F ++G+ + G V +++ +
Sbjct: 1 MLQAIRDGSKGIAARIIVGLIILTFALFGIESIVALGGGEDAPAEVNGEEITLLEVQQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + ++ G + L + + +L+ L Q + G+ + I
Sbjct: 61 NAQKTRLQRQFGENFDPAMFDENLLRQAAVRSLIDQELLAQAATESGVYISDQDIDRLIV 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+SP F + F + + G Y + + + V + G ++L +
Sbjct: 121 QSPNFQV-NGAFDAATYDLTIRSMGFTRMTYREAVRESIKTQQVQSAWQGTEFATDLEKE 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + RS+ Y + + S+ + ++E + E + Y++FD
Sbjct: 180 QLSLLENQIRSIKYKEYKSDNFKESVQLSDEDIQSFYEANDSRFMTTESVIVDYVIFDKE 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLKKGKK 295
+ +++ ++ DE+Q Y+ ++ + V ++ + + EA L +G+
Sbjct: 240 KLAEQVIVTEDEIQERYDAMLQESQENKEYRVAHIMLLSADDEARKTLSEAKSKLGQGES 299
Query: 296 FIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
F LAE + + G F+ I + AD++ + G + ++ G +
Sbjct: 300 FESLAERYSEDDTSKYAGGDLGFASATIYEPEFADAVL-SLEVGAVSDIVETRDGLHLIK 358
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
+ + + ++ E+K I + + + E + ++ + S+ ++ +V
Sbjct: 359 LVDTRQPEIAAYDEMKDTIEQNLVNEQIEVRYIEMLESFKDAVFASNSLQTVAEDFNLVV 418
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
P G +A P F + + D + + GS + V++KE
Sbjct: 419 QTSPEFTRN----AGTGIAENPVIRDAAFSDVVLYESMVSD-VIEIDAGSAVAVRLKEHN 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
++ + LE V + + K E + A + G +
Sbjct: 474 ESKLKPLEVVKDQIVTTLTSQKAGELAKASAEADLDALEAGGDI---------EGWIAVE 524
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
I R + +SQ F P + G ++ + PV + +
Sbjct: 525 DITRNAEKVDSL---ILSQAFETPEGDSSLVAMRQGNHALLQVTKVVRDVPVIDLESSAQ 581
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVH 619
+ + + + K+ V +
Sbjct: 582 KIERTNAVNQYQAYFNSFKNDSDVETN 608
>gi|300703976|ref|YP_003745578.1| peptidyl-prolyl cis-trans isomerase (rotamase d) [Ralstonia
solanacearum CFBP2957]
gi|299071639|emb|CBJ42963.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
solanacearum CFBP2957]
Length = 649
Score = 238 bits (605), Expect = 3e-60, Method: Composition-based stats.
Identities = 97/654 (14%), Positives = 230/654 (35%), Gaps = 44/654 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R R + L+++F F+ +G+ + GS VG + S
Sbjct: 1 MLDFVRTHRRLMFL-VLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDAVITTSELDARV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ + Q +G + + + + +LD ++ + L +V I
Sbjct: 60 REQTERLRQMLGGQYDPRQFEGPQMRRDVLDGIIQQRVMANEASRTNLSIADSKVRETIE 119
Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P D KF D ++ LA +G+ +++ L + V
Sbjct: 120 QIPAVAQLRKPDGKFDTDAYIKLLAAQGMTPEQFDARVRSELVLQQIPQSIVASAFVPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+D+ + R V ++L + + + +++ ++ + PE + Y++F
Sbjct: 180 LVDRLIDARDQQREVQALLLKPADYVSKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVF 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
+ K+I ++ ++L+ Y++N ++ + E R ++ A A
Sbjct: 240 SGEDMMKQIPVTPEQLKEYYDQNVARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEE 299
Query: 287 --FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ K F +LA++ LG +K ++F+L + GD +
Sbjct: 300 VLAEVRKAPGNFAELAKKYSGDPGSAAQGGELGFLAKGATV-PQFESALFALKQPGDISD 358
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
V+ FG+ I + +K S + VK ++ ++R A++K E
Sbjct: 359 VVQSDFGFHIIKLEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSD 418
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVA 457
S+ ++ + K+ V ++ +++L +F D + V
Sbjct: 419 SLKPVADKLKLQVQTADNVTR---VPNPALGSSPINNDKVLKALFTDDVIKNHRNTQAVQ 475
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ + + ++ E PA +KL +V VK ++A + + +
Sbjct: 476 VGPTTLVAARVVEHRPASVKKLADVREQVKAKVLAEQSAALAKKAGEEKLAAVKQSNS-- 533
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
+ GA ++R + + ++ + + + Y +++
Sbjct: 534 ---AEGFGA----AQTVSRQ--QAQGTPPAALAAILRADAAKLPATIGVDLGAQGYALYR 584
Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + L Q + ++ LK++ V ++ +I
Sbjct: 585 INKVLPPANVDPARRAADAQQLAQADGQADFNAYYEALKARSKVKINTTVIDAA 638
>gi|114765314|ref|ZP_01444431.1| hypothetical protein 1100011001355_R2601_24744 [Pelagibaca
bermudensis HTCC2601]
gi|114542294|gb|EAU45323.1| hypothetical protein R2601_24744 [Roseovarius sp. HTCC2601]
Length = 615
Score = 238 bits (605), Expect = 3e-60, Method: Composition-based stats.
Identities = 109/629 (17%), Positives = 243/629 (38%), Gaps = 28/629 (4%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
I +L F+ +G + G + SVG + S + + + EL +
Sbjct: 7 GITKYIVWAILIASFVGFGAFGTVNFSGGVGNIGSVGDTTISTSDYARALQSELRAQQAQ 66
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
G + E+AR GL ++L +V+ A L+ IGL RV +++ F+G D
Sbjct: 67 TGRAITVEQARQSGLTDQVLAQVVTNAALEDETTRIGLSVGDERVAEDLSNVEAFNGPDG 126
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
F + L G+NE E+ ++ + +R+ + + G + +D + E+R
Sbjct: 127 NFDRSAYAYALQNAGLNEGEFEENLRRDAARSILSAAVISGTTLPDAYVDTLLEYIGESR 186
Query: 191 SVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
+ + L + PS L W++ D + PE K I++ +E+
Sbjct: 187 AFTWATLERDALNTGLPVPSEDELQAWYDDNIDLFTLPETKVITFAWLTPDMIVDTVEVE 246
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLS 308
D L+A Y++ E++ PE R +E+LVF + EA A + F + +E+G +L
Sbjct: 247 EDALRAAYDERAEEFNLPERRLIERLVFSTEAEAQAAADRIASVEADFETVVDERGLALI 306
Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
D +G +++ + D + A+ GD SFG + V+ + P+ ++E
Sbjct: 307 DTDMGDVTRDTLGDAA---EPVFSAEVGDVVGPAPSSFGPALYRVNGVLPAQETPYEEAV 363
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
D+ + + + +A ++ +++ LA G +++E+++ + + + G
Sbjct: 364 PDLRDALVLDRARRVIEGMASSIDDELAGGATLEELAQDTDMELGQIDWTASTDTGIAGY 423
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
Q L DG +++ E E+V V++
Sbjct: 424 ---------QSFREAASAVAEGDYPAIAELGDGGIFALRLDELRAPAPAPFEDVRDRVEQ 474
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
W+ + + + ++A ++ S+ G + + R +
Sbjct: 475 LWEQEQATDALLTQAEEIATRISE-----DQSFGENGLDASAESGLTRESRI-QGLPAAV 528
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD------KFISYLTQMMNKDL 602
+ VF + + + ++ ++ + +++ +++DL
Sbjct: 529 LEAVFDMAAGEARA--VRGDGAALIVRLDDVTPVNMEDPQIQQLGNALRDQAAGSVSQDL 586
Query: 603 LDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
++ A ++S+ +++ + + L +
Sbjct: 587 FRALNADIQSRAGISIDQSAVNSVLSTLQ 615
>gi|91775766|ref|YP_545522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
flagellatus KT]
gi|91709753|gb|ABE49681.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
flagellatus KT]
Length = 626
Score = 237 bits (604), Expect = 4e-60, Method: Composition-based stats.
Identities = 102/645 (15%), Positives = 219/645 (33%), Gaps = 42/645 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR S+ W+AK+ L + +PF + G+ L S V V + + + N+
Sbjct: 1 MLEAIRNRSKGWLAKVILAAITIPFALVGVDSYLRDAGSSVAVAKVDGESITVQEYSNAL 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + V+ L + ++D+LV G L ++ ++ I
Sbjct: 61 QNLRNRL--QSEGKVDQAVIDGPELKQAVIDHLVEGRLLANEVKRAKFVVSDEQLSHYIM 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ FH +D +FS ++ LA ++ + L N + +
Sbjct: 119 QEESFH-QDGQFSQALYDQFLAERRRTPSQFENEVRTDLLTMQAREGLSALAFVPNGVAN 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
A + ++R V + + + ++++++D ++ PE ++ ++L +
Sbjct: 178 NAIKVAHQSREVSIAEFRTADYLSQVKVTEDEVNAYYKEHQDKFKVPEQVKLEFVLLSAN 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+++ +E + Y +N ++ E R ++ + K K LA
Sbjct: 238 ALIPSQQVTEEEAREYYAQNAAQFQGDEQRRASHILIGFGVSPTPETKQKAKEKAEEVLA 297
Query: 301 -----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
++ G LG F + + K G + ++
Sbjct: 298 LVKKNPERFEQLAHQYSQDPGSKDKGGDLGLFGPGTMVKP--FEDAVFSMKPGTISDLVE 355
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402
FGY I ++ I SF++V+ I ++ KA + E + + S++
Sbjct: 356 TDFGYHIIKLTEIH-GSGQSFEDVQGQIRAELMYQKALAQFSEQAENFSNMVYEQADSLE 414
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+++ + + K L V + +
Sbjct: 415 PVAKEFGLQVQTSGWLSR-----ADGAKFFKNDKLMNLVFSDEVLKDRRNTEAVEVSPNN 469
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ ++ E PA R EEV ++ K K A K + E K
Sbjct: 470 LISARVVEHKPAAARAFEEVKAGIEDFLKHEKAANLAREKGEAALAELRAG--------K 521
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-IENGLSYVVFKVTNSKV 581
+ + ++R + +S F + + + + Y++ KV K
Sbjct: 522 AVSLNWTEPVTVDRYNPN--TLTELSVSTAFKADASKLPAYNGVADRNGYLIAKVHAVKF 579
Query: 582 GPVQEKDK--FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
E+D+ + L + + + I LK + VT++ L+
Sbjct: 580 AVESEEDQRAAKAQLQAALAAEYRRAYINSLKQKAKVTINTQLLD 624
>gi|86138848|ref|ZP_01057420.1| hypothetical protein MED193_03732 [Roseobacter sp. MED193]
gi|85824495|gb|EAQ44698.1| hypothetical protein MED193_03732 [Roseobacter sp. MED193]
Length = 614
Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats.
Identities = 126/634 (19%), Positives = 252/634 (39%), Gaps = 32/634 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I+K S T+V I + +L V +G + S+S V VG ++V ++
Sbjct: 1 MATGIKKLSNTFV-WILMGLLIVGLAGFGAVNFSSSMS---AVALVGEEEVTVDEYLREM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++E + + G ++ + + GLD+ +L L+S A +D ++++G+ + E+A
Sbjct: 57 QREQRALQAQGGQALSLSQMAAFGLDQAVLGRLISIAAIDNEVKNLGISVGDDNLRQELA 116
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F F + L +NE ++ + +RT V G V G + + L
Sbjct: 117 EIPAFQDPSGNFDRQTYSFALQNANLNESDFEADLRRESARTLVQGAIVVGAKMPDTLTK 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ RS Y+ + + P +AVL ++E D++ PE KRI+Y
Sbjct: 177 TLTSYIGARRSFSYVPFSPDQISLIQVVPEDAVLMAFYEANADDFTLPETKRITYARLSP 236
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADEAFQSLKKGKKFIQ 298
+E+ + L+ Y E+Y E R VE+LVF + AD Q G F
Sbjct: 237 DMILDTVEVDEEALRTLYSDRSEQYQIAERRLVERLVFADDTSAADAKAQLDVAGTTFEA 296
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
L E +G +L DI LG ++ ++ D + A+ G + G + V+
Sbjct: 297 LVEGRGLALQDIDLGDVTQSFLGDAA---EAVFAAEVGTIVGPLPSDLGPALYRVNGQLE 353
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ +F++ + ++ +++ +A +++ + + + LA G ++++++ + L
Sbjct: 354 ARHTTFEQAEPELRDELAADRARRLIEQQAEEINDLLAGGATLEDLANESDMEVASLGWS 413
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
G+ + + L DGS +++ E +P R
Sbjct: 414 GETGEGITAY---------EGFRTAASLVTVEDFPTAEFLGDGSLFALRLDEILPERPEA 464
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
E+ V W+ + A + ++A L+ ++ G G+ + + R
Sbjct: 465 FEDAKAKVLAAWEADRVATALQAEAEALLATVTQTGDFPE------GSQVQQETGLTRTA 518
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISY 593
+ D ++Q+FS +K E G VV ++ E +
Sbjct: 519 YLDNT-PADMMNQIFSMEPGDLKVIKGEAGT--VVVRLDAVLAAEENEEMQLLAKALSTQ 575
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
L Q +++ L + I+ + + + V + L
Sbjct: 576 LDQAVSEALFTAFISDAQLRAAPRVDQQALNAVL 609
>gi|330952802|gb|EGH53062.1| periplasmic folding chaperone [Pseudomonas syringae Cit 7]
Length = 627
Score = 237 bits (603), Expect = 4e-60, Method: Composition-based stats.
Identities = 97/640 (15%), Positives = 222/640 (34%), Gaps = 38/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ +SQ++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
++ R ++ D+ L + ++ + ++++ + +PE + YI
Sbjct: 180 AQVEAFARLE--KQTRDFASLTLPADTSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+++ +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDEQAKAKIEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L KG+ F LA+E + LG K + D + +++++L K + +
Sbjct: 298 LAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKG-VYDPAFEEALYALNKDQ-VSQPVRTD 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + ++ +F +K + N ++ +K E K+LE+ + + + +
Sbjct: 356 FGWHLIKLLGVEAPSVPTFASLKSKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQPA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + G + A I + + +T+ L + +
Sbjct: 416 QDLGLKVQTTAPFGREGGEGLTANRAVI-----QAAFSPEVLEEGANSNTLELDPETVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ KE + + LE V + ++ + +K L+ + K G
Sbjct: 471 VRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGLREGKIPLA--AKQDG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK 580
+ R + + +F P K P + S+V+ ++
Sbjct: 529 RDWKMMEAVTRSQ---EGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLNGVN 585
Query: 581 ---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S+ +
Sbjct: 586 QAAAPTDAEKAQYRRFLASREGQQDFAAYRAQLESKAKIE 625
>gi|104781017|ref|YP_607515.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas entomophila L48]
gi|95110004|emb|CAK14709.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
entomophila L48]
Length = 619
Score = 237 bits (603), Expect = 5e-60, Method: Composition-based stats.
Identities = 106/635 (16%), Positives = 226/635 (35%), Gaps = 36/635 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ V + G + + S V Q + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAATHSQDAAKVNGQTISQNELSQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L + L L+ L Q ED + I
Sbjct: 61 DMQRRQLMQQLGKDFDPALLDEKMLREAALKGLIDRKLLLQGAEDAKFAFSEAALDQLIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KFS + F S + + G ++ + + + + G ++ ++
Sbjct: 121 QTPEFQV-DGKFSAERFDSVIRQMGYGRMQFREMLAQEMLIGQLRTGLAGSSFVTDKQVE 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + PA S+ + ++++ + P+ I YI
Sbjct: 180 AFARLE--KQTRDFAALTFKADPAAVKVSDEEVKAHYDQHAKEFMTPDQVVIDYIELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-------EADEAFQSLKKG 293
++++++DEL+A YEK + ++ +E Q L+KG
Sbjct: 238 AFFDQVKVNDDELKALYEKEIANLGEQRHAAHILIEVNDKTTDAQAKARIEEIQQRLEKG 297
Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ F +LA+ + + G F+ + D + D+++ L K + + FGY +
Sbjct: 298 EDFAKLAKAFSQDPGSANAGGDLGFAGPGVYDPTFEDALYKLNKDQ-VSAPVRTQFGYHL 356
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ ++ SF +K + +++ + ++ E K+LE+ + + + ++ +
Sbjct: 357 VKLLGVQAPDVPSFASLKDKLTRELKTQQVEQRFVEATKQLEDAAFEASDLVQPAQDLGL 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
G + A I + + + + L + + +++KE
Sbjct: 417 KVQTSAAFGREGGEGITANRAVI-----QAAFSEQVLEESANSNGIELDPETVVVLRVKE 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
LE V ++ + K E+ +KA++L+ + K G S
Sbjct: 472 HRKPEQLPLEAVAKNISQHLAKEKATAELKAKADKLIAGLREGS------VKAAGQSWKV 525
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSKVGPV- 584
R + VF K P + S VV ++ G
Sbjct: 526 QEAATRGQ---DGIDPAELQAVFRMAKPESKDKPVYGSVVLGDGSLVVLQLKGVNEGAAA 582
Query: 585 --QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK + YL + L+ +T
Sbjct: 583 TDEEKAQIRRYLASRAGSQDFAAYRKLLEGSADIT 617
>gi|289207782|ref|YP_003459848.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
K90mix]
gi|288943413|gb|ADC71112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
K90mix]
Length = 633
Score = 237 bits (603), Expect = 5e-60, Method: Composition-based stats.
Identities = 103/643 (16%), Positives = 234/643 (36%), Gaps = 29/643 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR + W+A + + ++ +PF +WGL + F SG V + N
Sbjct: 1 MLQAIRDRASGWLAYVIIGLITIPFAVWGLGEY-FGGSGPLVAAEVNGTDIQVRDVHNEA 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +++ G + + G+ + L+ L+ L Q + G +A + EI
Sbjct: 60 RAQRDQMARMFGGQIPDDLLDEEGIRMQALETLIRQELLRQAADSAGFKAAGDSILREIR 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P+F + +FS + + L + ++ ++ + + + + G P++ L+D
Sbjct: 120 GMPVFQ-EGGQFSRERYAQLLNAQRLSPSDFERDIGRSIILSQLQGGIQATGFPADALVD 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R + R + + + + ++E +D++ E RI+Y+ D
Sbjct: 179 DFSRLRNQTRVASWRIFPVDDFDQPDVVDDKAIEAYYEANQDDFTTEERVRIAYLQLDPE 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLKKGKK 295
E +++S D+++ YE N+ +Y PE+R V Q+ + E +E L G+
Sbjct: 239 ALEDAVDVSEDDVRQHYEVNRSRYEEPELREVRQIRIQDTGEEGEAKINELRDRLDDGED 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +LAE + SLG ++ + ++I +G + + G+ I
Sbjct: 299 FAELAEAYSEDSLSADRGGSLGEIARGDL--DRTLETIIFTLPEGLISRPVRTDRGWFIL 356
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
V++I+ + F++V+ ++ +R A + + L A E +
Sbjct: 357 EVTSIQEARPQPFEDVRDEVERDLRDRSAEQMQIDALDDLMGQAAEYPDSLEPAAE--AT 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+++ D+ + + + + L DGS + ++I+E
Sbjct: 415 RLEIQTSDWFTRGSGDGIAQH--RSIRNAAFDPRVLEDGHNSEAIDLQDGSTVVLRIEEH 472
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P+ R L EV ++++ + A+ +L+ I +
Sbjct: 473 EPSEVRPLAEVEDEIRERLRREAAADAAREAGEELIARLRDADDWADAI--EDDDAWQME 530
Query: 532 NQINRMDNENK--FFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNSKVGPVQ 585
++ R + +F I + V + ++ +
Sbjct: 531 REVRRDSPVDGDNGVPGGLQQHLFRLSAPGEDAVEISGTRLGTGDFAVAILHEVRLDEQE 590
Query: 586 EKDKFISY----LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + +A+L+S+ +T + +
Sbjct: 591 ADAAMRQQARELMRNAYASAEFRAYLAWLESEADITRYPENLD 633
>gi|289679420|ref|ZP_06500310.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
syringae FF5]
gi|330897791|gb|EGH29210.1| periplasmic folding chaperone [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330939710|gb|EGH43005.1| periplasmic folding chaperone [Pseudomonas syringae pv. pisi str.
1704B]
Length = 627
Score = 237 bits (602), Expect = 5e-60, Method: Composition-based stats.
Identities = 97/640 (15%), Positives = 221/640 (34%), Gaps = 38/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ +SQ++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
++ R ++ D+ L + ++ + ++++ + +PE + YI
Sbjct: 180 AQVEAFARLE--KQTRDFASLTLPADTSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+++ +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDEQAKAKIEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L KG+ F LA+E + LG K + D + +++++L K + +
Sbjct: 298 LAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKG-VYDPAFEEALYALNKDQ-VSQPVRTD 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + ++ +F +K + N ++ +K E K+LE+ + + + +
Sbjct: 356 FGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQPA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + G + A I + + +T+ L + +
Sbjct: 416 QDLGLKVQTTAPFGREGGEGLTANRAVI-----QAAFSPEVLEEGANSNTLELDPETVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ KE + + LE V + ++ + +K L+ K G
Sbjct: 471 VRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGLRDGKIPLA--AKQEG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK 580
+ R + + +F P K P + S+V+ ++
Sbjct: 529 RDWKMMEAVTRSQ---EGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLNGVN 585
Query: 581 ---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S+ +
Sbjct: 586 QAAAPTDAEKAQYRRFLASREGQQDFAAYRAQLESKAKIE 625
>gi|330503121|ref|YP_004379990.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
mendocina NK-01]
gi|328917407|gb|AEB58238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
mendocina NK-01]
Length = 615
Score = 237 bits (602), Expect = 5e-60, Method: Composition-based stats.
Identities = 89/635 (14%), Positives = 216/635 (34%), Gaps = 40/635 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR SR W+AKI + ++ + G + S + V + + +
Sbjct: 1 MLQNIRDNSRGWIAKIIIGLIVMLMAFTGFEAIVTGTSNRNNAADVNGDTITLNELNQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + Q++G ++ L + L L+ L Q D G + I
Sbjct: 61 EMQRRQLLQQLGRDFDASLLDEKLLREASLKGLIERKLLLQAANDAHFAFSQGSLDQVIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D +F F + + G ++ + + + +
Sbjct: 121 QTPEFQV-DGRFDASRFDQVIRQMGYTRLQFRQMLEEEMLIGQLRAGLGASSFVTEQEAR 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
++ D+ L + PA + ++A + +++++ + +PE + Y+
Sbjct: 180 AFANLE--RQTRDFASLTIKADPAAVELNDADVKAYYDEHASEFMSPEQVVLEYVELQKD 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN---QKEADEAFQSLKKGKKFI 297
++E+S+++L+ YE + + + + +E + + G+ F
Sbjct: 238 SFFDQVEVSDEDLKPLYESEIANLAEQRQAAHILIEGDDEAARSKIEEIKKRVDAGEDFA 297
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E + LG + D + ++ ++G + + FG+ + +
Sbjct: 298 ALAKEFSQDPGSAVDGGDLGYAGPG-VYDPAFEKAL-YALQQGQVSEPVKSEFGWHLIKL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
++ SF +K +A + + + E K+LE+ + + + ++ +
Sbjct: 356 LGVQAPEVPSFDSLKDKLARDFKAQQVEQHFVEATKQLEDAAFQASDLAQPAQELGLEVK 415
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKES 471
G I Q+L F D + + T+ L + + V++KE
Sbjct: 416 TSAAFGREG------GATGITANRQVLQAAFSPDVLEDGANSSTIELDPSTVVVVRVKEH 469
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
LE+V ++ + + ++ + + + + A+
Sbjct: 470 NKPEQLPLEQVAESIRGHLLQERASAAAKAEGEKQLAAAEAG--------EAVAANWQVQ 521
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSKVGPV-- 584
R + +F P P N YVV ++ V
Sbjct: 522 EAATRSQ---DGVEPKVLQALFRMPKPAKAGEPTFAGVTLNNGDYVVLRLDGVNVPEETL 578
Query: 585 --QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+E + ++L + ++ L+++ +
Sbjct: 579 ADEELAMYRNFLASRAGQQDFAALRKQLEAKADIE 613
>gi|299066735|emb|CBJ37929.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
solanacearum CMR15]
Length = 637
Score = 237 bits (602), Expect = 5e-60, Method: Composition-based stats.
Identities = 93/640 (14%), Positives = 220/640 (34%), Gaps = 39/640 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ + L+++F F+ +G+ + GS VG + S +++ + Q +G
Sbjct: 1 MFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRVREQTERLRQMLG 60
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKD 129
+ + + + +LD ++ + L +V I + P D
Sbjct: 61 AQYDPRQFEGPQMRRDVLDGIIQQRVMVNEASRANLSVADSKVRETIEQIPAVTQLRKPD 120
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
KF D ++ LA +G+ ++ L + V L+D+ +
Sbjct: 121 GKFDTDAYIKLLAAQGMTPDQFDARVRSELVLQQIPQSIVSSAFVPKSLVDRLIEARDQQ 180
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
R V ++ A + + +++ ++ + PE + Y++F + K+I ++
Sbjct: 181 REVQALLFKPADYAAEVTADDKAIQAYYDAHQQEFAVPEQVKAEYVVFSGEDMMKQIPVT 240
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------------FQSLKKGKKF 296
++L+ Y++N ++ + E R ++ A A + K F
Sbjct: 241 PEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKSPGSF 300
Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+LA++ LG +K +++F+L + GD + V+ FG+ I
Sbjct: 301 AELAKKYSGDPGSAAQGGELGFLAKGATV-PPFENALFALKQPGDISDVVESDFGFHIIK 359
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIV 411
+ +K S VK ++ ++R A++K E S+ ++ + K+
Sbjct: 360 LEEVKGGGVQSLDAVKPELEREVRTQLANKKYTELADAFSNGVEDQSDSLKPVADKLKLQ 419
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
V G + LF + + V + + + + E
Sbjct: 420 IQTADPVTRVPNPALGNSPINNEKVLKALFVDDVTKNHRNT-QAVQVGPTTLVAARAVEY 478
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
PA +KL +V VK ++A + + + + GA
Sbjct: 479 RPATVKKLADVREQVKAKVLAEQSAALAKKVGEEKLAALKQSNS-----AEGFGA----A 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVG---PVQE 586
++R + + + + + + Y ++++
Sbjct: 530 QTLSRQ--QAQGTPPAALVAILRADAAKLPVTIGVDLGAQGYALYRINKVLPPANVDPSR 587
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ LTQ+ + ++ LK++ V ++ +++
Sbjct: 588 RAADAQQLTQVAGQADFNAYYEALKTRSKVKINGSVVDAA 627
>gi|89073234|ref|ZP_01159764.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium sp.
SKA34]
gi|89050944|gb|EAR56408.1| putative peptidyl-prolyl cis-trans isomerase D [Photobacterium sp.
SKA34]
Length = 630
Score = 237 bits (602), Expect = 6e-60, Method: Composition-based stats.
Identities = 113/637 (17%), Positives = 236/637 (37%), Gaps = 36/637 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +R+ + + KI L ++ F+ G+ L + V +++ +F ++
Sbjct: 1 MMERLREGANSIWVKIILSLIIFSFVFAGVGSYL-AGGNEQVAAKVNDKEISQRAFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + Q++G + + A +L+ +V+ ++Q ++GL +V
Sbjct: 60 QNQRNQMQQRLGDYFSKLMGDPAYVQQFRNSVLERMVNDELIEQRATELGLGVSDAQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D F+++ + L R G + +++ + K + R + G N
Sbjct: 120 AIVAMPAFQV-DGVFNNEQYNLTLRRAGFSPEQFAESIRKDMLRQQFLSALEGSDFALNN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L++ ++ + R V + LN ++ +++K K + P ++SYI
Sbjct: 179 ELNELRKLESQERVVRTLKLNLADFTDKVTVTDKEAKAYYDKNKTQFTRPAQVKVSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLKK 292
I+I++ E +A Y ++K KY + E V ++ + + LK
Sbjct: 239 SDKNLVNNIKITDKETEAYYNEHKSKYSTAEKIQVSHILVKGDSDTSKAKAEALLAELKG 298
Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F +A++ L F K + D + ++ FSLAK GD + ++ SFGY
Sbjct: 299 GANFADVAKKSSDDTFSAKDGGKLDWFGKGVM-DPAFEEAAFSLAKPGDMSGLVKSSFGY 357
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407
I + I+ F +VK I +++ + +E+ + +L E S+D+ +
Sbjct: 358 HIILLDGIEEPKVKPFADVKASIVAELQEQQVAEQFYKLQSKLAETAFESPDSLDDAAEA 417
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
K I + + ++ K Q + D + + + V+
Sbjct: 418 VKAKIIKTGFISL-----QDEKGVLSDKKVQEALQSPEVHDDGMNSDVIEIAPEHVVVVR 472
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ ++ +V VK K ++ + KA+ ++ D+ G S
Sbjct: 473 VDDARSESVLPFTDVEAKVKTLLAQQKGEKQATEKADSIIAALRDGKS---DVIAKDGLS 529
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-------ENGLSYVVFKVTNSK 580
I R + + F+ P N + KV N
Sbjct: 530 FSGDQTITRSGPDA-----NVARVAFTLPKPKDGKVSYGMSRDNKGNVEIIALDKVVNVT 584
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+F + + M + L + + L+ VT
Sbjct: 585 TSKSDVDTQFATQVENMFAQQDLSATLQTLRESAKVT 621
>gi|260596813|ref|YP_003209384.1| periplasmic folding chaperone [Cronobacter turicensis z3032]
gi|260215990|emb|CBA28646.1| Peptidyl-prolyl cis-trans isomerase D [Cronobacter turicensis
z3032]
Length = 645
Score = 237 bits (602), Expect = 7e-60, Method: Composition-based stats.
Identities = 123/636 (19%), Positives = 251/636 (39%), Gaps = 32/636 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+S+ L S+ V Q++ + N+
Sbjct: 21 MMDNLRAAANHVVLKIILGLIILSFILTGVSNYLI-GGNSNYAAKVNDQEISRAQLENAV 79
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + +++G + S L ++ L L+ A +DQ+ + LE +V
Sbjct: 80 NIERNNLERRMGDRFSELASNEQYMAELRQRALQGLIDEALIDQYARSLHLEISDEQVRQ 139
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F D KF + + + + G++ +Y L+ +V +G
Sbjct: 140 SIFKNPAFQS-DGKFDNARYNAIITSMGMSADQYAQALRNQLTTDQLVSAVMGSDFILPG 198
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
DQ + + R + + S + +++++ +N+++PE R+SYI
Sbjct: 199 ESDQFAALFAQQRQARTATIVVDALAEKQQVSEQEIKDYYQQHANNFQSPEQFRVSYIKL 258
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + S DE+QA Y+K+++++ PE + + EA LK+G F
Sbjct: 259 DAAALAE--NASEDEIQAYYDKHQDEFGQPERNRYSLIQTKTEAEAKAILAQLKQGADFA 316
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G PD ++ L KG + VI S G++I +
Sbjct: 317 TLAKEKSVDVITARNGGDMGWLEPGTTPD-EFKNAG--LKDKGQLSDVIKSSVGFLIVRL 373
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ P+ EV DI+ +++ KA + +++ + + + EK +
Sbjct: 374 DDTTPAKVKPLSEVHDDISAKVKQEKALDAFFALQRKVSDAANN--DNESLVSAEKAAGV 431
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLL--FRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D+ +D E+ P + + + P S + + ++I +
Sbjct: 432 KAVDTDWFSRDAVPVELNFKPVTDAVFGGNLLGANGTPGSNSDIITVDGDRAFVLRITDH 491
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P ++ L +V V K K + + +A +L+ K GK + K G +
Sbjct: 492 KPQAEKPLADVKEQVTALVKHQKALKAANEEAQKLLSAL-KAGKG-DEALKAAGIAFSPA 549
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVE--MVKCFPIENG--LSYVVFKVTNSKVG--PVQ 585
R + VF+ P+ + I N + V+ + + + G P
Sbjct: 550 KTFERTTQDTLTQP------VFALPLPAKDKPSYGIGNDMQGNVVLLALDDVRSGTMPDA 603
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+K L Q + D+++ L+ + + D
Sbjct: 604 QKKAMGQRLIQNNAEIAFDALLKGLRKDAKIKLGDA 639
>gi|257093852|ref|YP_003167493.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046376|gb|ACV35564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 635
Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats.
Identities = 97/645 (15%), Positives = 241/645 (37%), Gaps = 38/645 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+ +R R V ++FL ++ +PF WG+ + + + + SVG K+ F +W+
Sbjct: 3 FDAVRNNKR--VVQVFLALITLPFAFWGVDSYVRNSGAGTDLASVGDSKITRPQFDQAWR 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + Q +G E + +L++LV L L + I +
Sbjct: 61 VQQDRMRQVLGANFRPESMNTPEAKLAVLNSLVDQRLLLIEAAKDRLAVGDDLLREVIGK 120
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P ++ +FS + + LA +G+++ ++ + L+ +V S D
Sbjct: 121 IPALQ-ENGQFSLARYRAVLAAQGMSQSQFEAQVRQDLTLQQLVAAIGDTGIASTTTADA 179
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
R E R V + + A + ++++ + + E + +++ +
Sbjct: 180 MLRIQSEERQVAELRFSPDQFLERVQVDPAAVRKFYDDNANRFEIAEQAKAEFVVLSLDG 239
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----------LK 291
+K ++S+ E+ YE +K++Y PE R ++ + D K
Sbjct: 240 LLEKAKVSDAEVTGWYESHKDRYQQPEERRASHILILANADVDREKARAKAEEVLKEIQK 299
Query: 292 KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+F +LA++ + LG F + + + A++ + + ++ FG
Sbjct: 300 SPGRFAELAKQHSQDPGSAEKGGDLGFFGRGMMVKA--FEDTVFKAQENEVSGLVQSEFG 357
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISR 406
Y I V+ IK + +V+ +I +++ AS + E + S+ +
Sbjct: 358 YHIIKVTGIKVGTQRALVDVRPEIEAELKRQAASRQFAEAAEAFSNLVYEQPDSLQPAAD 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYM 464
R K+ + + + ++L +F +D + V + + +
Sbjct: 418 RFKVTIQQSGWLPRNPPVEALPALGQL-NSPKVLAALFSEDSLKNRRNTEAVEIAPNTLL 476
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
++ E PA R + V T+++ KT + A + + + ++
Sbjct: 477 AARVIEHRPATVRPFDTVKTEIEASLKTQEAAALARKAGEAQLGQLQQGAES-------- 528
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVG 582
+ +++R+++ + +F V + + G +YV++K+
Sbjct: 529 KVAWGPAREVSRIESRQ--LPAVALKAIFKANVGKLPAYAGAEVGGGNYVLYKIMRVSHP 586
Query: 583 ---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + ++ ++ + +A L+ +Y + ++ + ++
Sbjct: 587 EKVDDKRRAALQREQETILAQEDFAAYLAGLRLRYKIDINKSALE 631
>gi|290474659|ref|YP_003467539.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
outer membrane proteins [Xenorhabdus bovienii SS-2004]
gi|289173972|emb|CBJ80759.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
outer membrane proteins [Xenorhabdus bovienii SS-2004]
Length = 623
Score = 236 bits (601), Expect = 7e-60, Method: Composition-based stats.
Identities = 113/635 (17%), Positives = 250/635 (39%), Gaps = 29/635 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G++ L S G + V Q + + ++
Sbjct: 1 MMDNLRTAANGPVLKIVLALIILTFVLTGVTGYLSSEGG-NYAAKVNGQTISRAQLEQAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+Q+ + ++G + S+ + + + LD L++ DQ+ +GL A +V
Sbjct: 60 QQDKIALQDRLGDQFSTLLSDEQKVQQIRRSSLDRLITVILSDQYARKLGLSASDEQVKE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI P F D KF ++ +++ L + + + + L ++ + G
Sbjct: 120 EIRNLPFFQT-DGKFDNNKYLTLLTGANRSPDNFAEQVRQDLINRQLMSILTGSEIALPT 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ Q F+ R+V + L + + A ++ L +++ +++ PE ++SYI
Sbjct: 179 EIKQETALAFQERTVRFATLELKSIEAQQKVTDKELKNYYDVNSNSFTVPEKVKVSYIKM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ K + +S+ +++ Y+ N +Y E + + + EA LKKG F
Sbjct: 239 DAADELKSVTVSDADIEKYYKNNLPQYMQVEQKKYSMVQLVSDAEAKSVLDELKKGADFS 298
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+LA E+ LG + +PD L +KG + VI S GY I +
Sbjct: 299 KLAAEKSTDKFSAQKGGDLGWMEESSLPDE---IKSAKLIEKGQLSGVIKLSGGYAIFRL 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+IKP S EV+ +I ++ KA + +++ + A + EK
Sbjct: 356 DDIKPQIIKSLVEVRSEIEKIVKQEKAVDAFYALQRKVSDAAANDNESLTAA--EKAAGY 413
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKES 471
D+ +D E+ + + D + +++ V++ +
Sbjct: 414 KAVTTDWFDRDHIPAEINFGSVVQTIFSGNLIDDKGASGTNSDVISVDGDRAFIVRVDDI 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + E+ T + + K K +++ ++ +L+ + K G +
Sbjct: 474 KPETIQPYEQAKTQIAELVKRQKAEKQLQLESEKLLAALKEGKG--EQALKAAGIQFGVS 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKC----FPIENGLSYVVFKVTNSKVG--PVQ 585
I + N+ + F+ P + + V+ ++ G +
Sbjct: 532 TVIKHLSQTNQ-----ATNVAFTLPHPKDGKSEYGLAQDGFGNAVLIQLDKVVPGSVSEE 586
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ ++I+ + +L+S++ L+ + +
Sbjct: 587 QVKQYIAAYQYQIGTFMLESLMINLRDDAEIKMGQ 621
>gi|312961785|ref|ZP_07776283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
fluorescens WH6]
gi|311284044|gb|EFQ62627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
fluorescens WH6]
Length = 624
Score = 236 bits (601), Expect = 8e-60, Method: Composition-based stats.
Identities = 94/636 (14%), Positives = 219/636 (34%), Gaps = 33/636 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL-FSVSGSSTVVSVGRQKVPFSSFINS 59
ML+ IR S+ W+AK + ++ G+ S + V V + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAIFQASGTNKQDVAKVNGEAITQPELSQA 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ + Q++G ++ L L L+ L Q D + I
Sbjct: 61 VDMQRRQLMQQLGKDFDASLLDEKLLRDAALKGLIDRKLLLQGAADSKFGFSEAALDQVI 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
++P F D KF+ + F + + G + ++ T+ + V G ++ +
Sbjct: 121 LQTPEFQV-DGKFNAERFDQVIRQLGYSRLQFRQMLTQEMLIGQVRAGIAGSGFVTDAEV 179
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
R ++ D+ +N + PA ++ + +++++ + P+ I Y+
Sbjct: 180 LAFARLE--KQTRDFATVNLKANPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKK 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSLKK 292
++ + +DELQA YEK + + + + +E L K
Sbjct: 238 SSFFDQVTVKDDELQAAYEKETANLAEQRRAAHILIEVNDKVTEAQAKAKIEEIQARLAK 297
Query: 293 GKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
G+KF LA+E + + G F+ + D ++ K+ + + +FG+
Sbjct: 298 GEKFDALAKEFSQDPGSANNGGDLGFAGPGVYDPDFETAL-YALKQDQVSAPVRSTFGWH 356
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + ++ +F +K + +++ + ++ E K+LE+ + + + + K
Sbjct: 357 LIKLLGVEAPEVPTFASLKDKLTRELKAQQVEQRFVEATKQLEDAAFEASDLAQPASDLK 416
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ G + A + D + + L + + ++ K
Sbjct: 417 LTVHTSAPFGREGGEGVAANRAVV-----TAAFSPEVLDEGANSTAIELDPETIIVLRAK 471
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
E LE V ++ + + + A++L+ G +
Sbjct: 472 EHRKPAQLPLESVAAAIRTQMAKERASAAAKTHADELIASLRDGKTPLNQ--PVDGQAWK 529
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-----GLSYVVFKVTNSK---V 581
T +R + + +F P K P S V+ ++
Sbjct: 530 VTEAASRS---AEAVDPAVLQALFRMPKPAAKDKPTFTTVTLADGSLVIVRLNGVNEASA 586
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK ++ +L + + + L++Q +
Sbjct: 587 PTDEEKAQYRRFLASRVGQQDFAAYRKQLETQADIK 622
>gi|253996686|ref|YP_003048750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
mobilis JLW8]
gi|253983365|gb|ACT48223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
mobilis JLW8]
Length = 632
Score = 236 bits (601), Expect = 8e-60, Method: Composition-based stats.
Identities = 105/645 (16%), Positives = 229/645 (35%), Gaps = 41/645 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++ WV K L + VPF ++G+ L ++ + V ++ ++ N+
Sbjct: 1 MLDGIRSVAKGWVGKAILAFITVPFALFGIDSYLSQAGNNAAIAKVDGSEISVQAYANAM 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + + + + + +LD L++ L++ I+ + ++ I
Sbjct: 61 QNLRSRM--QAEGKADQAQLDNPEVKAMVLDQLINEQLLEKEIQRANYKISDAQLATYIT 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F KD KFS +++ L + K++ L S D
Sbjct: 119 AMPSFQ-KDGKFSQELYDELLQQNRYTPKKFEAEIRATLLAQQAQDGIAKLGFISTARAD 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + + R V L + S + +++K+KD R PE +I ++L
Sbjct: 178 KTLKLLNQKRVVTVSELKTKDYLDQVKVSPEEVKAYYDKHKDKLRDPEQVKIEFLLLSAS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL- 299
I++ + E++ Y++N K+ E R ++ A + K K L
Sbjct: 238 SLVPGIKVDDAEVKRYYDENSAKFKGNEQRRASHILIGFGVNATPEQKQEAKNKAQALLD 297
Query: 300 ----------------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+++ G + LGSF + + + K + + ++
Sbjct: 298 TIKKNPKSFEELAIKNSQDPGSATKGGDLGSFGRGAMVKP--FEEAAFKMKVNEVSDLVE 355
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
FGY I V+ I F+ +K I + KA + E + + + D
Sbjct: 356 SEFGYHIIKVTEIT-GQGSDFESLKAQIKGDLIFQKAQAEFVEKAESFSNAVYEQS--DS 412
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
++ K+ L L + ++ K K L V + +
Sbjct: 413 LAPVAKMFGGQLQLSGWTSREEAAKFFKN--DKIVSLIFSPESIKEHRNTEAVEISPNNL 470
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ ++ E PA + + V ++ K ++ +K + + G
Sbjct: 471 VSARVLEYKPAATKTFDAVKAGIEDLLKLEAASKLAIAKGEEALKTLRAGG-------SV 523
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKV 581
+ +++R + + ++QVF V + + ++ L Y++ K+
Sbjct: 524 ANLDWIPEVKVDRKN--AQGLTQLAMTQVFKTDVSKLPAYSGLADSKLGYLIVKIIAVDT 581
Query: 582 ---GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ L+Q++ + L + L+ + VTV+ L+
Sbjct: 582 ESIADAESVKTAKGELSQVLVDEYLSAYKQSLREKAKVTVNQRLL 626
>gi|297569902|ref|YP_003691246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
alkaliphilus AHT2]
gi|296925817|gb|ADH86627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
alkaliphilus AHT2]
Length = 630
Score = 236 bits (601), Expect = 8e-60, Method: Composition-based stats.
Identities = 104/646 (16%), Positives = 244/646 (37%), Gaps = 36/646 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML ++R+ +R+ + + +V++ + F++W + TV +V Q + F +
Sbjct: 1 MLSLLRRKARSPLIQAAVVIIILVFILW--VPQMGGNGDPGTVATVNDQPISTREFQRRY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
LG + + SE ++GL +++L +V L Q GL + +
Sbjct: 59 NDLLGQYRDQFEGAIPSELIEALGLREQVLSQMVQETLLLQSARKTGLPVSSEELQQAVQ 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F ++ +FS ++ LA ++ E+ L R ++ +G + S+ +
Sbjct: 119 SMGEF-TENGQFSLQLYRQILAASRLSVHEFEAGLRTDLLRRKILEHLMGFAQVSDQEVR 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + + Y+ L A DP++ + +F + YR P RI Y+LF
Sbjct: 178 ERFHRDHDQVRLSYLYLRADDFRAAQDPTSEEIEAYFAEKDHRYRTPPQVRIDYLLFPAD 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQ 288
+ E + I ++L A YE+N++++ +PE R ++ ++ +A E +
Sbjct: 238 DTE--MTIEEEDLVAYYEQNRDRFDTPEQRRARHILIRSRSDAPEETRARQRQQAETVQE 295
Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
++G+ F QLA + S LG F + + + + + G+ + ++ S
Sbjct: 296 LAREGQDFRQLALLYSEDRSAEDGGDLGFFRRGEMLEP--LEEAVFAMEPGEISDIVETS 353
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
G+ + + I+ T++ E + +I ++ ++ + + E + S+ +
Sbjct: 354 LGFHVIKLEEIQEPQTITLAEAEAEIRREILRSRGRQMAFNRANEVYESILTTGSLARGA 413
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ L + AA+ + + F + + Y
Sbjct: 414 EEGGVSLQSTGLFT------PEQPPAALRRHPEAVSSAFELNRGELSS--IISTQDGYAI 465
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ ++E + L EVL V+ D + A A +L+ +EG++ + + G
Sbjct: 466 IYVQEREEPQVPPLAEVLDRVRADLIEEQAAMAARRAAEELLAAL-QEGQDLQHLAAAEG 524
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
+ + ++ + V + V K+ +
Sbjct: 525 YRVRESAWFSQATAAATDLPARVARTGLTLTKENPVPGTVQSANDRFYVIKLQQRRTADE 584
Query: 585 QEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ ++ + + + ++D+ I +L + +TV + ++
Sbjct: 585 ELFQRWAEPIENDLLMAKQEAMIDTWIQHLLQEAKITVSEGTLRSL 630
>gi|70731342|ref|YP_261083.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens
Pf-5]
gi|68345641|gb|AAY93247.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens
Pf-5]
Length = 623
Score = 236 bits (601), Expect = 8e-60, Method: Composition-based stats.
Identities = 95/635 (14%), Positives = 221/635 (34%), Gaps = 32/635 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + V+ + G + + + V +++ + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVALLALTGFDAIFKATTHNQDAAKVNGEEITQNELSQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G ++ L + L L+ L Q +D G + I
Sbjct: 61 DMQRRQLMQQLGKDFDASLLDEKMLREAALKGLIDRKLLLQGAQDSKFAFSEGALDQVIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KFS + F + + G ++ T+ + V G ++ +
Sbjct: 121 QTPEFQV-DGKFSPERFDQVIRQLGYTRLQFRQMLTQEMLIGQVRAGLAGSGFVTDAQVL 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + PA ++ + +++++ + P+ I YI
Sbjct: 180 AFARLE--KQTRDFASLTIKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYIELKKA 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSLKKG 293
++ + +++LQA Y+K + + + + +E L KG
Sbjct: 238 AFFDQVSVKDEDLQALYQKEIANLSEQRRAAHILIEVNDKVNEAQAKAKIEEIQARLAKG 297
Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ F LA+E + S G F+ + D + ++++L K + + FG+ +
Sbjct: 298 ESFEALAKEFSQDPGSASNGGDLGFAGPGVYDPTFEKALYALNKDQ-VSAPVRTGFGFHL 356
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ ++ SF +K + ++ + ++ E K+LE+ + + + ++ K+
Sbjct: 357 IKLLGVEAPEVPSFASLKGKLTRDLKTQQVEQRFVEATKQLEDSSFEASDLAQPAQDLKL 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
G D A I D + + L + + ++ KE
Sbjct: 417 TVHTSAPFGREGGDGIAANRAVI-----QAAFSTEVLDEGANSTAIELDPETVVVLRAKE 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
LE V + ++ + +KA +L+ G
Sbjct: 472 HRKPEQLPLESVASAIRTQLAKEHASAAAKTKAEELIASLRDGKTALNK--PVDGQDWKV 529
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-----GLSYVVFKVTNSK---VG 582
+ + R + + +F K P + +V ++
Sbjct: 530 AHAVTRG---QEGIDPAVLQALFRMTKPESKDKPTFTSVTLPNGNLLVLQLNGVNEAAAP 586
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK ++ +L + + + L++Q +
Sbjct: 587 TEEEKAQYRRFLASRVGQQDFAAYRKQLENQADIK 621
>gi|183601065|ref|ZP_02962558.1| hypothetical protein PROSTU_04689 [Providencia stuartii ATCC 25827]
gi|188019406|gb|EDU57446.1| hypothetical protein PROSTU_04689 [Providencia stuartii ATCC 25827]
Length = 618
Score = 236 bits (600), Expect = 1e-59, Method: Composition-based stats.
Identities = 97/626 (15%), Positives = 235/626 (37%), Gaps = 20/626 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R + + K+ L ++ + F++ G++ + S+ V Q + F ++
Sbjct: 1 MMDNLRTKANSPFIKVLLAIIILSFVLTGVAGYMI-GGSSNDAAKVNGQSISREQFQTAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
QE + +G + L ++L+NL++ + ++ ++ L A +V
Sbjct: 60 SQERQSLQDSLGDKFSEIAGNEESMKFLRNQVLNNLINSTLMAEYANELNLSASDQQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P+F + KF D + LA + + L + + F+
Sbjct: 120 AIFEMPVFQT-NGKFDGDKYRQILAANNYSADNLAEQVRANLILSQLSDSFIKTDFALPS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R + L+ A + + ++ +D++ APE ++SY+
Sbjct: 179 EVKTYAELVLQEREIRVATLSLADEQAKQTATEDEIKAYYNANQDSFIAPEKVQVSYVEI 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + ++++E++ YE+N + Y E + + ++KEA+ LK G F+
Sbjct: 239 DAAALPPQ-SVTDEEVKTYYEQNLKNYTQAEQKHYSMIQVASEKEANAIIDELKAGADFV 297
Query: 298 QLAEEQGKSL-SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA E+ S + G +L +KG + I +VI + +I
Sbjct: 298 ALATEKSTDKLSAGNKGIIGWMEEASTPSEIVNANLTEKGQISTPIKSDSNFVIFRLDDI 357
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP VK +I N++ K S++ + +++ E + ++ E++ + +
Sbjct: 358 KPESIKPLDSVKDEIKNKLIQDKNSKQFYDLQQKVSEAATNDN--ESLASVEEVSGLKVV 415
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKESIPA 474
D+ K+ + ++ + + + V++ + P
Sbjct: 416 ATDWFDKNNPPAALNYPKVINEIFSERLVDQNGSTGINSDVIDVQGDRAFVVRVSQYAPE 475
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ + LE V + V+ K K + ++ +LV + + ++
Sbjct: 476 QTQPLEAVKSQVETLVKRQKANAALKAEVEKLVAALKEGKGD------TANIQFSAPEKV 529
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK--DKFIS 592
+R+ + G ++ + + + V+ ++ G +K ++ +
Sbjct: 530 SRLMPQTPVIG-AAMAMAKPADGKATYTTVRDEKDNLVIIQLDKVIPGKASDKELEQLTA 588
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTV 618
MM + +++I L++ + V
Sbjct: 589 NYRGMMGMAVNEALIQNLRNNAKIEV 614
>gi|330972584|gb|EGH72650.1| periplasmic folding chaperone [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 627
Score = 236 bits (600), Expect = 1e-59, Method: Composition-based stats.
Identities = 97/640 (15%), Positives = 222/640 (34%), Gaps = 38/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ +SQ++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KF+ D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQAPEFQV-DGKFNADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
++ R ++ D+ L + ++ + ++++ + +PE + YI
Sbjct: 180 AQVEAFARLE--KQTRDFASLTLPADTSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+++ +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDEQAKAKIEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L KG+ F LA+E + LG K + D + +++++L K + +
Sbjct: 298 LAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKG-VYDPAFEEALYALNKDQ-VSQPVRTD 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + ++ SF +K + N ++ +K E K+LE+ + + + +
Sbjct: 356 FGWHLIKLLGVEAPSVPSFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQPA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + G + A I + + +T+ L + +
Sbjct: 416 QDLGLKVQTTAPFGREGGEGLTANRAVI-----QAAFSPEVLEEGANSNTLELDPETVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ KE + + LE V + ++ + +K L+ K G
Sbjct: 471 VRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGLRDGKIPLA--AKQEG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK 580
+ R + + +F P K P + S+V+ ++
Sbjct: 529 RDWKVMEAVTRSQ---EGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLNGVN 585
Query: 581 ---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L+ + + A L+S+ +
Sbjct: 586 QAAAPTDAEKAQYRRFLSSREGQQDFAAYRAQLESKAKIE 625
>gi|186475780|ref|YP_001857250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phymatum STM815]
gi|184192239|gb|ACC70204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phymatum STM815]
Length = 642
Score = 236 bits (600), Expect = 1e-59, Method: Composition-based stats.
Identities = 99/650 (15%), Positives = 221/650 (34%), Gaps = 39/650 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + + ++V+ G+ S+ V SV K+ F N+W
Sbjct: 1 MLDFFRNHQR-LMMFMLILVILPGLGFVGIQGFRGFFDESANVASVNGHKITRGEFDNAW 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G +++ + K +LD L+ L + + L + +
Sbjct: 60 RQQMDRARQMLGAQFDAKMFDTPERRKDMLDGLIQQRVLADETQRLHLTVSDDALRRALL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + LA +GI +Y + +S +
Sbjct: 120 ADPVIGSLKNPDGSIDVNKYKELLAMQGITPDQYQEQVRYSMSMQQLPAAITQTSFTPKT 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + R V + + + P++A + +++ ++D++ P I Y++
Sbjct: 180 LAQHLTELAEQQREVQGLAFRAKEYESKVQPTDAQIQAYYDAHRDDFATPATATIQYLVL 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
S+ EL+ Y+ N + +P ++ K+A A + K K
Sbjct: 240 SPATLAAAANPSDAELKKYYDDNIAHFRTPGEVRASHILIVAPKDASSADKEKAKQKARE 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + LG FS I D KK + +
Sbjct: 300 VLAQVKAHPDQFAQLAQQNSQDPGSASKGGDLGYFSPGMIAGGKAFDDAVFKMKKDEVSD 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
+I FGY I V++++PS T F+EVK IA ++ A++ +D + +
Sbjct: 360 LIQSDFGYHIVKVTDVRPSVTKPFEEVKDSIAKDLKAQLATKAFGDDSEGFTSTVYEQAK 419
Query: 401 M-DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + K+ + A + +F + + +
Sbjct: 420 SLQPAADKYKLQIQTATVTPRANSALPPDSPLNNAKFLAAVFANDSA-KDRNNTQAIDVG 478
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + + + + PA L V V++ + A+ + + + K K+
Sbjct: 479 NNTLIAAHVTDYKPAAVPALAVVRDAVRQKVVAQRAADLARKEGEAKLADLRKS-KSTDG 537
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
L S N+ + + ++ + + + + Y +++V
Sbjct: 538 FSSALKVS----------RNDAQGVPPAALGAIYKADAQKLPAYVGVDLGADGYAIYRVN 587
Query: 578 NSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + + + + + +S + L+++ V ++ +L
Sbjct: 588 SIVPPAPTDAQRLTSAQQQIASVNAQAEAESYLDALRARSKVKIYGSLEN 637
>gi|209694402|ref|YP_002262330.1| peptidyl-prolyl cis-trans isomerase D [Aliivibrio salmonicida
LFI1238]
gi|208008353|emb|CAQ78508.1| peptidyl-prolyl cis-trans isomerase D [Aliivibrio salmonicida
LFI1238]
Length = 618
Score = 236 bits (600), Expect = 1e-59, Method: Composition-based stats.
Identities = 115/628 (18%), Positives = 227/628 (36%), Gaps = 27/628 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ IR+ S V KI L ++ F+ G+ L VG +++ + F +
Sbjct: 1 MMDRIREGSTGLVVKIILGLIIFSFVFAGVGSYLV-GGSQPLAAKVGEREITRNDFEQVY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ + A K +LD +V+ A LD +++GL ++
Sbjct: 60 QNERNRMQSQLGEYFSTLLGDPAYVEQFRKSVLDRMVNDALLDNQAQELGLRVSDEQIRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F KD KF ++F L R G + ++ L R +V +
Sbjct: 120 AILSMPQFQ-KDGKFDEEIFNVSLRRAGFTSDSFAEYLRGDLVRNQLVSALESTEFTLSN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R + I L+ A + + ++++ K + PE ++SYI
Sbjct: 179 EVKAQGELEGQQREIRTITLDTATFAKNAKVTEEEVKEYYDANKQQFVRPEQVKVSYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-VFPNQKEADEAFQSLKKGKKF 296
+ + I+++E+Q Y +N++KY + E R V + + ++ +A L G+ F
Sbjct: 239 SGESLKAQAPITDEEIQTYYNENQDKYSTQEKREVSHILIKGDEADAQAVLARLDAGEDF 298
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+E + SLG + + D D+ F L GD + ++ +FGY I
Sbjct: 299 ATVAKEDSQDIPTAKEGGSLGWIERG-VIDPEFEDAAFQLVNVGDHSGLVKSAFGYHIIQ 357
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIV 411
+ I+ T +V DI + A++ L E S+D+ +
Sbjct: 358 LDAIEAPKTKPLAKVSADIKAFLVDEHAADAFYSMQTELAEKAFESPDSLDDAAEAVNAK 417
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIK 469
I A A+ +L ++ + + + + V+++
Sbjct: 418 VITSDFFSQADA-------PALLANSDVLQAIYSAEVKEDGLNSDVIEIAPEHVVVVRVE 470
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
ES LEEV V K ++ A ++ +K + G
Sbjct: 471 ESRDEMVLPLEEVKASVITRLSQAKGEQKALELAKNIITALNK---DDDAYLSEQGLVFT 527
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
I R D G + +V ++ ++
Sbjct: 528 EARMITRADELANDVYRLQKPTA---DKPTYAQVMDRQGNNVIVALDDVLELDNSAMAEQ 584
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L + + L + + LKS ++
Sbjct: 585 VSTRLLRTQTQQDLTATLDTLKSNTEIS 612
>gi|119476198|ref|ZP_01616550.1| peptidyl-prolyl cis-trans isomerase D, putative [marine gamma
proteobacterium HTCC2143]
gi|119450825|gb|EAW32059.1| peptidyl-prolyl cis-trans isomerase D, putative [marine gamma
proteobacterium HTCC2143]
Length = 640
Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats.
Identities = 97/640 (15%), Positives = 207/640 (32%), Gaps = 37/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR+ S+ +AK + ++ + F ++G+ D+L +G + V +V ++ +
Sbjct: 15 MLQNIRENSQGLIAKFIIGLIILTFALFGI-DSLVGNNGPAVVAAVNGDEISLAELEQGV 73
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E + +G + L +LD L+ L Q D + + I
Sbjct: 74 SLERRRLLNYMGENADPSLLDDQRLRGPVLDRLIQQKLLLQAAADASVGVSDAALDQTII 133
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F +D KFS + + S L G + Y ++ L+ + G + L
Sbjct: 134 AMEQFQ-EDGKFSPERYQSILRGSGYSTAFYKQLMSQDLTVAQLNSGISGSDFVISNELS 192
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + + RS Y +L V A S + Q + D Y++ E + +V
Sbjct: 193 EVSKIVGQQRSFRYFILPREKVAAQVIISEEEIQQHYNDNIDKYQSEEQ--VMLEYVEVK 250
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------FQSLK 291
+ + D+++ EY + + E R V ++ + D + + L
Sbjct: 251 TADFFKPVEADDIEREYALEIAAFEADEERRVSHILIEITDDRDASEARQLAEQLAEKLT 310
Query: 292 KGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
F +A E + LG F+ ++ + I G
Sbjct: 311 GDTDFATIAREFSEDPGSSSDAGDLG-FTMGDTFPPEF-EAALFELALDQISEPIQTDAG 368
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y + + I+ F E I +++ A + + L + + +
Sbjct: 369 YHLLKATEIRGVSPAPFSERGSVIEGRLQQAAAEAEFVNAVEDLRDLAFNSEGLTGPAED 428
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + + + + + L ++ V
Sbjct: 429 LSLTLKKSNFLSRSSATGSLANAQVLA-----AAFSSEVIVDGNNSDVLELAADHFIVVS 483
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + PA+ + L +V + + + A + E K GK +I G
Sbjct: 484 VLKHEPAKAKPLSDVQPFIIAELSQQRATALSLELAASAI-EAMKAGKEVAEIALEGGYE 542
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGP---VEMV-KCFPIENGLSYVVFKVTNSKVGP 583
I R + + + VF+ P V + V ++ + G
Sbjct: 543 WQVQQNITRSSS---VVDTNLMVAVFAMPDIHNGEVRREAVALANGDVAVVQLEEVEEGS 599
Query: 584 VQEKD-----KFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+Q+ + S L + + + L+S+ +++
Sbjct: 600 LQQFSTAEQRELKSQLQRNNADVSMSGFLRSLRSKADISI 639
>gi|66044996|ref|YP_234837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
pv. syringae B728a]
gi|63255703|gb|AAY36799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
pv. syringae B728a]
Length = 627
Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats.
Identities = 97/640 (15%), Positives = 222/640 (34%), Gaps = 38/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ +SQ++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADARFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KF+ D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFNADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
++ R ++ D+ L + ++ + ++++ + +PE + YI
Sbjct: 180 AQVEAFARLE--KQTRDFASLTLPADTSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+++ +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDEQAKAKIEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L KG+ F LA+E + LG K + D + +++++L K + +
Sbjct: 298 LAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKG-VYDPAFEEALYALNKDQ-VSQPVRTD 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + ++ SF +K + N ++ +K E K+LE+ + + + +
Sbjct: 356 FGWHLIKLLGVEAPSVPSFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQPA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + G + A I + + +T+ L + +
Sbjct: 416 QDLGLKVQTTAPFGREGGEGLTANRAVI-----QAAFSPEVLEEGANSNTLELDPETVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ KE + + LE V + ++ + +K L+ K G
Sbjct: 471 VRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGLRDGKIPLA--AKQEG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK 580
+ R + + +F P K P + S+V+ ++
Sbjct: 529 RDWKVMEAVTRSQ---EGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLNGVN 585
Query: 581 ---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L+ + + A L+S+ +
Sbjct: 586 QAAAPTDAEKAQYRRFLSSREGQQDFAAYRAQLESKAKIE 625
>gi|291616553|ref|YP_003519295.1| PpiD [Pantoea ananatis LMG 20103]
gi|291151583|gb|ADD76167.1| PpiD [Pantoea ananatis LMG 20103]
Length = 646
Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats.
Identities = 107/629 (17%), Positives = 250/629 (39%), Gaps = 27/629 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R AS V KI L ++ + F++ G+ + L + V Q++ + ++
Sbjct: 24 MMDNLRAASNHVVLKIILGLIILSFVLTGVGNYLI-GGNNDYAAKVNGQEISRAQLDQAF 82
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E Q +G + + ++ L L+ A LD +I+D+ + +V
Sbjct: 83 NSERNRQQQMLGDQFSQLAGNDGYMQQMRQQALSQLIDQALLDSYIKDLHIAISDDQVKQ 142
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I F + KF + + + + G +Y + K L+ ++
Sbjct: 143 AIFNQAAFQT-NGKFDNAKYNAMIGNMGFTADQYAEALRKQLATQQLINAIANTDFMLKN 201
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R + L+ + A ++ + Q+++++K+++ APE R+SYI
Sbjct: 202 ETSKLVDLVAQKRDIQTATLDVNALAAKQTVNDDEINQYYQQHKNSFMAPEQFRVSYIKL 261
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ S+ ++QA Y+++K Y P+ + + +A+ LK G F
Sbjct: 262 DAAGMQE--NASDADIQAWYDQHKADYTQPQRDRYSVIQTKTEADANAILAQLKSGADFA 319
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+LA+ + G P + + L +KG + VI S G++IA + +I
Sbjct: 320 ELAKTKSIDPISARKGGDMGWLEPSTTPDELKNAGLKEKGQLSGVIKSSVGFLIARLDDI 379
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
P +V+ ++A++++ KA + + +++ E + + ++ E+ +
Sbjct: 380 IPEQVKPLADVRSEVADEVKQEKAVDAFYKLQQKVSEAASN--DNESLAGAEQASGMKAT 437
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D K++ K+ + V P + +++ ++I E P
Sbjct: 438 ETGWFSRDDVPKDLDFDAVKQAIFNGGLVGQNGAPGNNSDIISVDGDRAFVLRISEHKPE 497
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
LE+V + K K ++ ++A++L+ + + D+ K G +L + +
Sbjct: 498 AVEPLEKVKAQIIDTLKHDKATQQAKAQADKLLADLKAGKQ---DVLKAAGLTLSASKTV 554
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R + F+ P + + V+ V G P + +
Sbjct: 555 DRNTQD------PVAQAAFNLPQPEDNKPSWGVSEDMQGNVVLVAVDKVSTGTMPQAQIN 608
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + +TQ + ++++ L+ + +
Sbjct: 609 EMVKGVTQNNAQLAFEALLQNLRKEAKIK 637
>gi|170720931|ref|YP_001748619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
W619]
gi|169758934|gb|ACA72250.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas putida
W619]
Length = 623
Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats.
Identities = 101/637 (15%), Positives = 217/637 (34%), Gaps = 36/637 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ V + G + S S V Q + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMALTGFEAIFQAASHSQDAAKVNGQTISQNELSQAA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L L L+ L Q +D + I
Sbjct: 61 DMQRRQLMQQLGKDFDPALLDEKLLRDAALKGLIERKLLLQGAKDAKFAFSEAALDQVIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KF+ D F + + G ++ + + + V G ++ +D
Sbjct: 121 QTPEFQV-DGKFNADRFDQVIRQMGYGRLQFREMLAEEMLIGQVRTGIAGSSFVTDQQVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + PA S+ + +E++ + P+ I Y+
Sbjct: 180 AFARLEN--QTRDFASLTFKANPAAVKVSDDEVKAHYEQHAKEFMTPDQVVIDYVELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSLKKG 293
++++++DEL+A+YEK + + + +E Q L KG
Sbjct: 238 AFFDQVKVTDDELKAQYEKEIANLAEQRHAAHILIEVNDKVTDAQAKARIEEVEQRLAKG 297
Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ F +LA+E + + G F+ + D D++ G + + FGY +
Sbjct: 298 EDFAKLAKEFSQDPGSANSGGDLGFAGPGVYDPVFEDAL-YKLDDGQVSAPVRTQFGYHL 356
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ + SF +K + ++ ++ + K+L++ + + ++ +
Sbjct: 357 IKLLGKQAPEVPSFASLKDKLTRDLKTPLVEQRYVDASKQLQDAAYEAADLAQPAQDLNL 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQI 468
G + I ++ F ++ + L + + +++
Sbjct: 417 KVHTSAPFGREGGEG-------ITANRAVVQAAFSEEVLEEAANSTAIELDPETTVVLRV 469
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
KE LE V + + K E+ +K ++L+ + G S
Sbjct: 470 KEHRKPEQMPLEAVAKSISEHLAKEKATAELKAKTDKLIAGLRDG--SVAAGTAQEGQSW 527
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-----GLSYVVFKVTNSK--- 580
+ R + +F K P+ S VV ++
Sbjct: 528 KAYEAVTRNQ---DGIDPAELQALFRLAKPQAKDKPVYGSVVLADGSLVVLQLKGVNEGA 584
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK + YL + + L+ +T
Sbjct: 585 AASDEEKQQIRRYLASRAGQQDFAAYRKQLEGSADIT 621
>gi|297538717|ref|YP_003674486.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
301]
gi|297258064|gb|ADI29909.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
301]
Length = 633
Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats.
Identities = 102/645 (15%), Positives = 228/645 (35%), Gaps = 40/645 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++ WV K L ++ +PF ++G+ L S + V VG + ++ N+
Sbjct: 1 MLDQIRTVAQGWVGKALLALITIPFALFGIDSYLSSAGNNVAVAKVGGNSISVQAYDNAL 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
K + + + S + +LD L++ L I + ++ +
Sbjct: 61 KNMRNRL--QSEGKFEQAQLDSPEVKSLVLDQLINKQLLSDEIHNAKYAISDSQLATYVT 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F KD KFS +++ L++ ++ ++ L SN D
Sbjct: 119 GMPEFQ-KDGKFSQELYDQTLSQNQLSPSKFEAGMRADLLAQQAQDGIARLGFISNARAD 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + + R V + + + ++E++K+ PE +I ++
Sbjct: 178 EVLKLANQQRVVTVSEIKTKDFVDQVTVKPEEVKAYYEQHKNKLIVPEQVKIEFLSLAPV 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ + +S+DE++ Y+ N K+ E R ++ A + K K LA
Sbjct: 238 NFMRNVNVSDDEVKKYYDDNAAKFQGNEQRRASHILIAFGVSATPEQKQQAKAKAEEILA 297
Query: 301 -----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
++ G ++ LGSFS+ + + K + ++
Sbjct: 298 QIKKDPSKFEQLAVKNSQDPGSAVKGGDLGSFSRGAMVKPFEDAAFSM--KVNQVSDLVE 355
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
FGY I V+ F +K I + KA ++ + + + + + E
Sbjct: 356 SEFGYHIIKVTE-ISGQNADFNSLKPQIKGDLMFQKAKDEFAKQAEAFSDLVYTQSGSLE 414
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ K + D+ ++ K L+F D + + + +
Sbjct: 415 PA--AKAFGGQVQKSDWLSRESGAKFFKNNEKIMSLIFSNEVLKDRRNT-EAIEVSTDNM 471
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ ++ + PA + +EV ++ K ++ SK + +
Sbjct: 472 VSARVVDYKPAAPKSFDEVKAGIEALLKLEAASKLAISKGEAALKDLRDGKN-------V 524
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSK- 580
G + ++R + + ++QVF + + ++ Y++ KV
Sbjct: 525 AGIEWIKEVTVDRKN--AQGLTDLAMNQVFKTNTAKLPAYSGLADSKQGYLLVKVIKVDS 582
Query: 581 --VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ + K + L + + + + L+ + VTV++ L+
Sbjct: 583 SSLADEETKKAAKAQLNAALANEYIAAYKQSLREKAKVTVNEKLL 627
>gi|85703584|ref|ZP_01034688.1| hypothetical protein ROS217_22622 [Roseovarius sp. 217]
gi|85672512|gb|EAQ27369.1| hypothetical protein ROS217_22622 [Roseovarius sp. 217]
Length = 604
Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats.
Identities = 113/622 (18%), Positives = 249/622 (40%), Gaps = 32/622 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
+ + +L +G ++ +V VG ++ +++ + + E+ + + G
Sbjct: 1 MWVLMGLLIAGLAGFGATNL---SGTVRSVGHVGTAEIDLTTYARALQNEIRALEAERGS 57
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
++ AR+ G+D +L L++ A L+ + +GL + +I P F G D F
Sbjct: 58 AISLAEARAAGVDTDVLSRLIARAALEHEADRLGLSIGDANLREQIVEIPAFQGLDGSFD 117
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + L + G+NE ++ ++ + T V + G++ LD + E RS+
Sbjct: 118 REAYRFALDQAGLNETQFEENIRAETASTLVQAAALAGLQTPATYLDTMMTYLAERRSLA 177
Query: 194 YIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ VL+ + PS L + + ++ PE K+I++ +E+
Sbjct: 178 FAVLDRSALQSGLPVPSEEDLQAYHQANLPSFTTPETKKIAFAWITPAMIIDSVEVEEAA 237
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
L+ Y + + ++ PE R VE+L+F + + A A + +G L E+G +SD+ L
Sbjct: 238 LRDAYAEREAEFNLPERRLVERLIFADTEAATRARARIDEGIALEMLVSERGLEMSDVDL 297
Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
G ++E + + A+ G+ I S G + V+ I + F+E + +
Sbjct: 298 GDVAREDLGSAA---EPVFSAEAGEVVGPIDTSLGPALFRVNAILAAQVTPFEEAEPQLR 354
Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
+Q+ +A ++ +++ LA G +++++++ + +L +D+ +G
Sbjct: 355 DQLAGDRARRVIEAQIDTVDDLLAGGATLEDVAKETNM---ELGSIDWHPGLTEGM---- 407
Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
V L DG +++ R + LE+V V W+T
Sbjct: 408 --AAYDSFREAADAVATGDYPEVVQLADGGIFALRLDGIDEPRVQPLEDVRDAVLNGWRT 465
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
T E + ++ + E + G +F D+ G + + + R D + + I V
Sbjct: 466 KATVEALKTQVEPQLAEL-RAGASFADL----GLTATDISNMTRRDYRPEA-PAEFIDTV 519
Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--------FISYLTQMMNKDLLD 604
F V+ IE V ++ + +D+ + + +DL
Sbjct: 520 FDMEEGEVR--VIEGEGRLFVLRLDSIAPPAEDAEDEDLTRLRSALQDQVAGDLGQDLFQ 577
Query: 605 SVIAYLKSQYSVTVHDNLIQRY 626
+ ++++ V ++ +
Sbjct: 578 VLANDIRARAGVELNQAALNAV 599
>gi|293605682|ref|ZP_06688060.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
43553]
gi|292815920|gb|EFF75023.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
43553]
Length = 684
Score = 235 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 103/663 (15%), Positives = 227/663 (34%), Gaps = 46/663 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IR R W+ I L+++ F + G+ + + +V Q + + F +
Sbjct: 31 MFEFIRSHRR-WMQLILLLLIVPSFFLVGIQGYDSFMRKEPELATVAGQPISRAEFDQAH 89
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ +L + Q+ G + + + L + +L+ L++ L D + IA
Sbjct: 90 RNQLEQMRQRQGARFDPAVSDTPALREGLLNQLINQRLLANVAVDNRFNVSDETLRNTIA 149
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P + +FS + + LA +G++ + + L+ V+ R ++
Sbjct: 150 AIPEVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVGRVLDPVGQSARAPAEVVA 208
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R+V + S A + W++ K + PE ++ Y++ D
Sbjct: 209 SLESALTQQRTVQLRRFAAEDYRSQVTVSPADIQAWYDANKQQLQIPEQVQVQYLVLDEA 268
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------------F 287
+ I++ +++L + YE+NK ++ PE R ++ A E
Sbjct: 269 AATQGIQVKDEDLASYYEQNKNRFGQPERRRASHIMIELAPGASEEARKAARAKAEDLAK 328
Query: 288 QSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
Q+ KF +LA + + LG + + + K + V+
Sbjct: 329 QAAADPSKFAELATKNSQDAGSASKGGDLGWLAPGMLSGP--LEKAIFGQAKDQVSGVVE 386
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR-LEEFLALGTSMD 402
G I V+ I+P+ EVK I +++R A+ E + ++ S+
Sbjct: 387 SPAGLHIVKVTEIQPAAIKPLAEVKDQITSEVRKQLAAVHFSEMASQLNKQVYDQRDSLQ 446
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD-----------PLS 451
+ + V G K +
Sbjct: 447 PAADAVGLKLRTASGVTREGLLPADKVGPGSAADSPDAELLDNPRVRQALFSGEVLREKQ 506
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ L + V++ PA LE+V ++ ++AE +
Sbjct: 507 NSGVIELSPAVMLAVRVANVEPAHVPVLEKVSDSIRARLLQERSAEAAKKAGEAALAADK 566
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-IENGLS 570
+ I+R D ++ + P + + +++G
Sbjct: 567 ANPAAAPE-------GFSPAVVISRQDPKD--LPQPVVDAAMRLPASPLPGYTGVQSGAD 617
Query: 571 YVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
Y + ++ + G KD+ L+ + + +++++ L+ QY V V + + +
Sbjct: 618 YTLVRLEKVEAGTVDASAKDRLAQQLSGGLGQAEIEALLKMLREQYKVQVLPSAAE-VIR 676
Query: 629 GEK 631
G++
Sbjct: 677 GDQ 679
>gi|49475360|ref|YP_033401.1| peptidyl-prolyl cis-trans isomerase protein [Bartonella henselae
str. Houston-1]
gi|49238166|emb|CAF27375.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella henselae
str. Houston-1]
Length = 629
Score = 235 bits (597), Expect = 2e-59, Method: Composition-based stats.
Identities = 151/638 (23%), Positives = 305/638 (47%), Gaps = 16/638 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML+IIR A+ +W+A+IFL +L + F++ WG+ ++S G + + +
Sbjct: 1 MLDIIRNATNSWIARIFLAILLLCFILLWGIPQ--LHTKSERDLISSGESIITIDDYRLA 58
Query: 60 WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ ++ ++G + + + + + L D+ + + +
Sbjct: 59 LADQSARLALASRLGRMFTPNEMQQYQIPAFVFNQLQQDVLFDEQTRQMKINLSKDAIAR 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+I +F + F HD+F + L + I+E ++D+YTK R ++ + GM+ +L
Sbjct: 119 KIGADNMFQ-INGVFKHDLFRNYLQQLHISESNFLDYYTKKEKRNQLISASLSGMKAPDL 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R DY+VL+ + I++P L +WFE +++ +R PEY+ IS++
Sbjct: 178 FYKALAFYQRETRIADYLVLDLKEKEIISEPHQETLQKWFETHRNKFRVPEYRTISFLSM 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ + K +IS DE++ Y +N ++ +PE RT+E+L FP ++ AD A + + G F
Sbjct: 238 ELADFIKPKDISEDEVKNYYTQNSSRFITPEKRTIEELRFPTREAADNAVKKIADGLSFD 297
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L + + K+L+DI G F++ +P S K+G + VI+ G VI V++I
Sbjct: 298 DLVKAENKTLNDIKKGPFTENELPS--YLSSEIFELKQGQISAVINDLQGPVIIRVTDIT 355
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P+ + F++V+ +I + +A++ ++ Y +E G S E++ + K+ +
Sbjct: 356 PAGPIPFEKVEDNIRQTLAQNRAADDIRNSYTEIENARFEGASFKELADQYKLPLRTI-T 414
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+D GK ++G + +P K+ LL ++ ++ D ++LP+G Y+W +I IPARD+
Sbjct: 415 LDKTGKTIEGTILTDLPQKDLLLNSIYQSNEGADLD-PLSLPNGGYLWYKINTIIPARDK 473
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
EE +V WK + + KA + + EGK+ + LG + TT + R
Sbjct: 474 TFEEAKQEVIAQWKKEEIQRLLDEKAKDALKQL-TEGKSLVSLAHILGVTKQTTQPLRRQ 532
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593
D+ ++ G++G+ +FSGP + +++++ P S
Sbjct: 533 DS-SEILGFEGVKALFSGPKGHYGIVKGPIAKNRILYQIKEVTTPKDISPHTLSSDIRSN 591
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ M+ +DL ++ ++ + ++ + +
Sbjct: 592 IDMMIREDLKLEMLHVANKEHPLKINSANYNQIFQALQ 629
>gi|52425898|ref|YP_089035.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
gi|52307950|gb|AAU38450.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
Length = 622
Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats.
Identities = 107/637 (16%), Positives = 246/637 (38%), Gaps = 33/637 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E + AS + +KI ++ V F++ G++ + + + +S V + +++ +F +
Sbjct: 3 MEKMHNASNSIFSKIIFALISVAFVVSGMAGYMVATADTSAV-KINGEEISQQAFQQQYN 61
Query: 62 QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
E +SQ++G + S GL K +L+ L+ L Q++ D+ L A V E
Sbjct: 62 DEYQRLSQQLGAQFSAVADTPEFSEGLRKSVLNRLIDQELLRQYVTDLKLVASDASVKQE 121
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I +P F D KF ++ + L + Y ++ + L + G +
Sbjct: 122 IVTTPAFQA-DGKFDNNAYQQTLRANNMTADMYAEYVREALRLDQLQSGLAGTVLMLPAQ 180
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
++ + +F+ R+ L A ++ + ++ K + PE ++ Y+
Sbjct: 181 QEEFAKLFFQKRTFRLAKLPLTAEMAKQTVTDQEVADYYNANKSAFMVPELVKVQYLDIT 240
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
EK +++++ E+Q Y+ NK ++ S + + F + +A +A+Q+L+ G F
Sbjct: 241 RAAAEKAVKVTDVEIQQYYQDNKAQFVSKAQDRLAHIQFAKETDALDAYQALQNGADFAA 300
Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+E+ + LG + +P + + + G ++ + Y I +
Sbjct: 301 LAKEKSLDKPSAVNGGELGWLNAGDLPKA--FEEAAAALQIGQYSQPVKVDNQYHIIKLE 358
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ K S +EVK IA+Q+R + + K++ E S E + K+ ++
Sbjct: 359 DRKEPKAQSLEEVKDLIASQIRQDLLNNQFYSLEKQVAEKAFEDQSSLEAA--AKVAGVE 416
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ D+ + + + + + D + V++ +
Sbjct: 417 IKETDYFSRKDIPAALNFPSVASAIFD--GDISQGNQNSEPMNVADQHSIVVRVVDHKAE 474
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ LEE ++ K K + +AN+ V E + + +
Sbjct: 475 GTKSLEEAKAEITAYLKRQKAETVMLEQANKTVEELNLGKQPALNFAAAETWVYAENKD- 533
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGP--VQEKD 588
+ +FS + V+ +T + G ++
Sbjct: 534 -----------PALNNAIFSMAKPEQDKTTYAAAKADNGDVVIVALTAVENGEVSAEQGA 582
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+F + + Q DL +++ L+++ + V++ +++
Sbjct: 583 QFAAQVMQAEQTDLQANLLKSLRNKAKIEVNEEFMKQ 619
>gi|317403066|gb|EFV83601.1| peptidyl-prolyl cis-trans isomerase D [Achromobacter xylosoxidans
C54]
Length = 656
Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats.
Identities = 95/662 (14%), Positives = 225/662 (33%), Gaps = 45/662 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IR R W+ I L+++ F + G+ + + +V Q + + F +
Sbjct: 1 MFEFIRSHRR-WMQFILLLLIVPSFFLVGIQGYESFMRKEPELATVAGQPISRAEFDQAH 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ +L Q++G + + L + +L+ L++ L D + IA
Sbjct: 60 RNQLEQYRQRLGAQFDPAVIDTPQLREALLNQLINQRLLANVAVDNRFSVSDETLRNTIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P + +FS + + LA +G++ + + L+ V+ R ++
Sbjct: 120 AIPEVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLEPVGQSARAPAEVVA 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R+V + + A + W++ K + PE ++ Y++ +
Sbjct: 179 SLETALTQQRTVQLRRFAAADFRSQVTVTPADIQAWYDANKQQLQVPEQVQVQYLVLNEA 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------------F 287
+ +++ +++L + YE+NK ++ PE R ++ A E
Sbjct: 239 AATEGVQVKDEDLTSYYEQNKNRFGQPERRRASHIMIEVPAGASEDARKAARAKAEALAT 298
Query: 288 QSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
Q+ +F +LA + + + LG + + + K + V+
Sbjct: 299 QAAANPAQFAELARKNSQDAGSAANGGDLGWLAPGMLSGP--LEKAIFSQSKDQVSGVVE 356
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR-LEEFLALGTSMD 402
G+ + V+ I+P+ EVK I ++R A+ + E + ++ S+
Sbjct: 357 SPSGFHVVKVTEIQPAAIKPLAEVKDQITAEVRKQLAAVRFSEMASQLNKQVYDQRDSLQ 416
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD-----------PLS 451
+ + V G + +
Sbjct: 417 PAADAVGLKLRTASGVTREGLLPADQAGPGSAVDSPDAALLDNPRVRQVLFSPDVLREKQ 476
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ L + + V++ PA L++V ++ ++AE +
Sbjct: 477 NSGVIELSPDTMLAVRVAAVQPAHVPPLDKVSDSIRAKLLDERSAEAAKKAGEAALAADQ 536
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-IENGLS 570
+ ++R D +N + V P + + +++G
Sbjct: 537 ANPAAAPE-------GFGGPLVVSRQDPKN--LPRSVLDAVMRLPAAKLPAYTGVQSGAD 587
Query: 571 YVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
Y + ++ + G +K++ L + ++++ L+ +Y V V +
Sbjct: 588 YTLVRLEKVEAGTVEAADKERLAQQLAGAWGQAENEALVRMLREEYKVQVLPAAAEAIRG 647
Query: 629 GE 630
G+
Sbjct: 648 GD 649
>gi|329894935|ref|ZP_08270734.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
IMCC3088]
gi|328922664|gb|EGG29999.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
IMCC3088]
Length = 624
Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats.
Identities = 85/640 (13%), Positives = 219/640 (34%), Gaps = 36/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR +++ V K+ + ++ + F ++G+ L +V V K+ +
Sbjct: 1 MLQDIRNSTQGPVFKVIVGLIVLSFALFGVESILL-GGSDDSVALVNGDKIRAVEVQQAA 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ I+ +G + L + L+ LV Q+ E +GL A ++ ++A
Sbjct: 60 NRQKQQIAAMLGENFDPSLIDDAQLSARALEGLVGNKLQQQWAESLGLTASDVQLGAQVA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F D KFS +++ LA G + + + G + +
Sbjct: 120 AIPAFQ-IDGKFSAELYKQSLAAAGFTPLTFREALRVDEIVKQLNGGLLASEFVTGAEAR 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R E RSV Y + + + + +++ + + E + +
Sbjct: 179 ALARVNGETRSVRYAKVAGDRFQNTVEITQDQIQAYYDSNAAQFVSEE--AVVLDYITLR 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF---- 296
+ ++ +L+A YE+ Y + V ++ + + + +
Sbjct: 237 ADDFVEPVAEADLRAAYEQEISSYAYQDEARVSHILLIQGDDEADEAYAQRIQSAQTALT 296
Query: 297 ---------IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+L+++ G S LG + + + ++I L + + G
Sbjct: 297 DGEAFSVVAERLSDDIGSSSDGGDLGY-TAGDVFPAEMEEAIKGLDINE-VSGPVLTDAG 354
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ V++ + S SF E++ ++ + A ++ + L++ T + E ++
Sbjct: 355 THLITVTDRRSSEPPSFMEMRSELEASLSQADAQRRLVSQVEALKDLTYTATDLREPAQT 414
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + + G + + + + + +++ ++
Sbjct: 415 LGLDVVRSGPITRRG------GQGVLGDDRVIAAAFSDLVIEEGWSEVIEVSENAFVALK 468
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ E PA + +E+V + E + + N+L+ + + G+ DI +
Sbjct: 469 LVEHQPAAPQSIEQVSDRIVSVLTAQAEEEALRAFGNELLDQLA-GGRTIEDIAQEHNLE 527
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK--CFPIENGLSYVVFKVTNSKVGPVQ 585
Q R + + +F+ + F + + ++++V + G +
Sbjct: 528 WQVALQSRRGSAD---IPRQWQANIFAESSTGLPRRNFAVGDNGDALLYEVFAVQAGDEE 584
Query: 586 E-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
S + + L + L+ + ++
Sbjct: 585 ALPETLFAAMKSRQLRGLQTALQRGLSETLRDNADIEIYQ 624
>gi|85712920|ref|ZP_01043960.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
baltica OS145]
gi|85693226|gb|EAQ31184.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
baltica OS145]
Length = 624
Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats.
Identities = 107/640 (16%), Positives = 251/640 (39%), Gaps = 37/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+++ AK LV++ + F + G+ + + ++TV V ++ + ++
Sbjct: 1 MLERIREGSQSFTAKAVLVLIILTFALAGVGSYV-TGGATTTVAEVNDAEISQQALERAY 59
Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++ G + +S+ + +L+ L+ L Q+ D G+ RV
Sbjct: 60 ENERNRLQEQFGDMFEAVSSQPGYMQSVRANVLEQLIQQELLVQYARDHGMRVSAARVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI P F +F +D+++ L G +++ L R+ +
Sbjct: 120 EIRDIPAFRSAG-QFDNDIYLMALRNAGYTPEQFATVLRDDLIRSQIAQAIGATEFALPA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+R + RS YI+ N + + S++ + ++ + + ++ PE +++++
Sbjct: 179 EALALQRLQKQTRSGAYIIAENANFVDQVELSDSDIENYYNENQQQFQTPEQLKVAFVQL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-----DEAFQSLKK 292
E +++S+DE++A Y+ + ++Y + E R V ++ + + EA L
Sbjct: 239 SKAELYNDVKVSDDEVKAYYQGSIDQYRTDEERRVAHILIESDSDNAQEKAQEALAQLND 298
Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F +A+E L +K + D ++ F+L GD + ++ SFGY
Sbjct: 299 GADFAAIAKEYSDDTFSAEQGGDLDWITKGSM-DEDFDNAAFALENVGDVSDIVETSFGY 357
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I + +++P F++V +I +++ + +K E ++L E E +
Sbjct: 358 HIIKLLDVRPGEVTPFEDVAGEIRQKLKAQQVDDKYFELQQKLAEVSFEQPDTLEPA--A 415
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
++ + D + ++ ++ D + D + V++
Sbjct: 416 DAINSTVRTSDLFTRQNAPTALSDEATLNRIFD--PQLIDEKLNSDVIETADDRSLVVRV 473
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
P + L++V + + K +A ++ ++G+ D
Sbjct: 474 LAHEPQAVKPLDDVREQIVSQLRVQKAQALALEQAEAWKKQWREQGEPDADYM------- 526
Query: 529 LTTNQINRMDNENKFFGYDGISQVFS-------GPVEMVKCFPIENGLSYVVFKVTNSKV 581
++ + +N+ + +FS P P + + KV + +
Sbjct: 527 ----TLDAIGMDNQNHPRAVLRALFSEAPSAGDAPALTTIEMPNGDAAVVALTKVNEADI 582
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ + + L ++ +L + I L Q S++ +
Sbjct: 583 EGEEANQQVVQQLQNRQSQLMLQAFIETLVEQASISRSQS 622
>gi|256556956|gb|ACU83578.1| parvulin-like peptidyl-prolyl isomerase [uncultured bacterium
HF130_AEPn_2]
Length = 623
Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats.
Identities = 94/635 (14%), Positives = 227/635 (35%), Gaps = 32/635 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ V G+ + + S V +++ + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIVVLMAFTGIEAIFQATTNSQDAAKVNGEEISQNELSQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G ++ L + L L+ L Q D + I
Sbjct: 61 DMQRRQLMQQLGKDFDASLLDEKMLREAALKGLIERKLLLQGAADSKFSFSEAALDQVIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F +D KFS + F + + G + ++ T+ + + G ++ +
Sbjct: 121 QTPEFQ-EDGKFSAERFDQVIRQLGYSRMQFRQMLTQEMLIGQLRAGIAGSGFVTDQEVL 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ ++ + PA ++ + +++++ + P+ I Y+
Sbjct: 180 NFARLE--KQTRDFATVSVKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKKA 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSLKKG 293
++ +++DELQA YEK + + + + DE L KG
Sbjct: 238 SFFDQVTVNDDELQALYEKETANLAEQRRAAHILIEVNDKVTEAQAKAKIDEVQARLAKG 297
Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ F LA+E + + G F+ + D +++ L + + + SFG+ +
Sbjct: 298 ESFEALAKEFSQDPGSANNGGDLGFAGPGVYDPEFESALYGLNQDQ-VSAPVRSSFGWHL 356
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ ++ SF +K + +++ + ++ E K+LE+ + + + + K+
Sbjct: 357 IKLLGVEAPEVPSFASLKDKLTRELKTQQVEQRFVEATKQLEDAAFEASDLAQPASDLKL 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
G + A I D + + L + + ++ KE
Sbjct: 417 TVHTSAPFGREGGEGITANRAVI-----QAAFSPEVLDEGANSTAIELDPETIVVLRAKE 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
LE V T ++ + + + A++L+ G +
Sbjct: 472 HRKPEQLPLESVATAIRAQMTKERASAAAKAHADELIANLRDGKLALDK--PVDGQAWKV 529
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK---VG 582
T R + + +F + K P S ++ ++ +
Sbjct: 530 TEAATRGQ---EGVEPAVLQALFRMAKPVAKDKPTFADVTLRDGSLMIVRLNSVTEGAAP 586
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK+++ +L + + + L+++ +
Sbjct: 587 TEEEKEQYRRFLASRVGQQDFAAFRKELEAKADIK 621
>gi|163856532|ref|YP_001630830.1| peptidyl-prolyl cis-trans isomerase D [Bordetella petrii DSM 12804]
gi|163260260|emb|CAP42562.1| peptidyl-prolyl cis-trans isomerase D [Bordetella petrii]
Length = 653
Score = 234 bits (596), Expect = 3e-59, Method: Composition-based stats.
Identities = 99/663 (14%), Positives = 224/663 (33%), Gaps = 45/663 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E++R R W+ I L+++ F + G+ + + +V Q + S F +
Sbjct: 1 MFELLRNHRR-WMQFILLILIVPSFFLVGIQGYESFIRREPELATVAGQPITRSEFDMAH 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ +L Q++G + + + +++L+ L+ L Q D G + IA
Sbjct: 60 RNQLEQFRQRLGSQFDPALVDTPAMREQLLNQLIDQRLLAQVAIDNRFSVSDGTLRNTIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P + +FS + + LA +G+ + + L+ V+ + ++
Sbjct: 120 AIPQVQD-NGRFSPERYRQVLAAQGMTPTSFEAGLRRDLAVGRVLEPINQSAGAPDAVVA 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R+V A S + W++ K PE Y++ D
Sbjct: 179 SLESALTQQRTVQLRRFAAADYRAQVSVSPEDIQTWYDGNKQQLTVPEQVTAQYLVLDEA 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--------- 291
+ +++ +++ + YE+NK ++ PE R ++ A E +
Sbjct: 239 AATQGVQVKEEDIASYYEQNKNRFGQPERRRASHIMIELPAGASEDARKAAHAKAEALAK 298
Query: 292 ----KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+F +LA + LG + + + K + V+
Sbjct: 299 QAAADPAQFAELARANSQDAGSAGKGGDLGWLAPGMLAGP--LEKSVFGLAKDQVSGVVE 356
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMD 402
G I V+ I+P+ EV+ +I ++R A+ + E +L E + S+
Sbjct: 357 SPSGLHIVKVTEIQPAAIKPLAEVRDEITAEIRKQIAATRFSEMATKLTEIVYDQRDSLQ 416
Query: 403 EISRREKIVSIDLPLVDFAGKDVK---------GKEVAAIPYKEQLLFRVFGKDD--PLS 451
+ + + G A + ++ +F D
Sbjct: 417 PAADALGLKLRTASGITREGLLPADQAGADAAASGPDAQLLDNPRVRQALFSPDVLRDKQ 476
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ L + + V++ + P L++V ++++ + AE + +
Sbjct: 477 NSGVIELSPDTMLAVRVAQVQPEHVPPLDKVSANIRERLLDERAAEAARKAGTAALDGWK 536
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-IENGLS 570
+ + + ++R D ++ P E + + + +G
Sbjct: 537 ADPATLPE-------GFGASAVVSRQQP--GQLSQDVLNAAMRLPAEPLPAYAGVNDGND 587
Query: 571 YVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
YVV ++ + G +D L + +V+ L+ QY V +
Sbjct: 588 YVVVRLDKVEAGASEASARDLLARQLGAAWGQAEDAAVLKVLREQYQVKILPEAASALQG 647
Query: 629 GEK 631
++
Sbjct: 648 QDQ 650
>gi|238898000|ref|YP_002923680.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465758|gb|ACQ67532.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 624
Score = 234 bits (595), Expect = 4e-59, Method: Composition-based stats.
Identities = 115/626 (18%), Positives = 250/626 (39%), Gaps = 15/626 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E R +++ KI L + + F+ GL + V V +K+ + +
Sbjct: 1 MMEYFRTSTKNLTLKIILFFIVLSFIAGGLGSYFI-GRATDYVAKVNGEKISRAQLEQAL 59
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G + + L KK++D L++ + Q+ +GL+ D V
Sbjct: 60 QNERHRLKQQLGEHFLALADNKDYMQQLRKKVIDQLINQILIVQYTHHLGLKIDDEHVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + F + +F + +++ ++ G E+ + + L ++ +F
Sbjct: 120 TIRKMSYFQTDN-QFDNKKYLNLISNMGYTPDEFAELQRQQLINDQLLQIFGNSEFVLPN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V LN ++ + +++K K+ + PE ++S+I+
Sbjct: 179 EIKRISALLLQKRHVRLATLNLNTFQNRQKVTDEEIKDYYDKNKNTFTNPEQVKVSFIIM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D E KI ++ E++ YE++ ++ PE++ + +KEAD LKKG F
Sbjct: 239 DAESMENKITVNKSEIKDFYEQHSAEFIQPELKNYSVIQLKTKKEADTTLDKLKKGALFS 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA+ + G PD ++ + +L +KG + VI S GY I +++I
Sbjct: 299 DLAKNKSIDSISRKKGGQLGWLEPDTTVDEIKQANLTEKGQLSGVIESSTGYFIFRLNDI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KPS+ V+ + +++ KA + K++ E + ++ E + +
Sbjct: 359 KPSYVKPLSIVRNQLIEKIKQEKAIQAYYVLQKKVSEAMINNH--KSLASAETVSGLKAQ 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLL--FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
F G++ E+ P + + V K S + L + +++ E P
Sbjct: 417 HTAFFGRNDVPSELNIKPVIKAIFDGDWVAKKTQTGSDADMINLDGDRAVVIRVDEHKPK 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R L++V V+K + K +++ + + + + K+ G S +
Sbjct: 477 RIEPLKKVRDKVQKQIRAQKAQKQILVEGEKFLAALKEGKGTSE--MKSAGLSFGEEKAL 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV--FKVTNSKVGPVQEKDKFIS 592
+ + N + + + +N ++ VT K+ EK FIS
Sbjct: 535 SYNSDHNALVESIFALNLPTKNKPVYGFSFDQNNNGVLIEFLSVTEGKLTS-SEKQAFIS 593
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ N +++++ L+ + + +
Sbjct: 594 NIQSGYNIANIEALLKNLRKEADIEI 619
>gi|292487473|ref|YP_003530345.1| putative protease maturation protein [Erwinia amylovora CFBP1430]
gi|292898715|ref|YP_003538084.1| peptidyl-prolyl cis-trans isomerase D [Erwinia amylovora ATCC
49946]
gi|291198563|emb|CBJ45671.1| peptidyl-prolyl cis-trans isomerase D [Erwinia amylovora ATCC
49946]
gi|291552892|emb|CBA19937.1| putative protease maturation protein [Erwinia amylovora CFBP1430]
Length = 623
Score = 234 bits (595), Expect = 4e-59, Method: Composition-based stats.
Identities = 115/640 (17%), Positives = 245/640 (38%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R AS KI L ++ + F++ G+ L SG V Q++ + F ++
Sbjct: 1 MMDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSG-DYAAKVNGQEISRAQFERAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E Q +G + + ++ L L+ L Q+ +DIGL ++
Sbjct: 60 SSERARQQQMLGEQFSVLAGNDGYMQQMRQQALSQLIDEMLLTQYAKDIGLTISDDQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F KF + ++S + G +Y + K L+ ++ G
Sbjct: 120 AIFTQPAFQTAG-KFDNAKYISIINNMGFTADQYAEALRKQLTTQQLIESVTGTDFVLGN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D + R V + +N + A + + + ++++++ + + E R+SYI
Sbjct: 179 EADSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSSEQFRVSYIKM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S ++Q+ YEK++ Y P+ + + EA LKKG F
Sbjct: 239 DAATMQQ--PVSESDIQSWYEKHQGDYTQPQRNRYSIIQTKTEAEARSVLDVLKKGGDFA 296
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+LA+E+ + +G E PD + L +KG + VI S G+++A +
Sbjct: 297 RLAKEKSADPISARNGGDMGWLEPETTPDELKRAA---LKEKGQLSGVITSSVGFIVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ +P + EV DIAN+++ KA + +++ + + + ++ E+ +
Sbjct: 354 DDTQPEKVKALSEVHDDIANKLKQEKAVVAFYKLQQKVSDAASN--DNESLASAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ G D E+ ++ + + P S + + ++I E
Sbjct: 412 KAVETGWFGHDNIPAELKFKAVQDAIFNGALLGENAAPGSNSDVITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L++V + K K ++ ++A++L+ E D K
Sbjct: 472 KPEAVKALQDVTAQITDTLKQQKGLQQAKAQADKLLAELKAGKG--DDALKAANLRFAAQ 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVG--PVQ 585
+ R + FS P+ + + V+ + + G P
Sbjct: 530 QTLTRTGQD------ALSQAAFSLPLPSQGKSSYGISEDAQGNVVLIALDKVQKGEMPQA 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + ++++ L+ + + +
Sbjct: 584 QKQALVQGITQNNAQLAFAAMLSNLRKEAKIKYGAAAQAQ 623
>gi|240850253|ref|YP_002971646.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
gi|240267376|gb|ACS50964.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
Length = 629
Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats.
Identities = 146/638 (22%), Positives = 312/638 (48%), Gaps = 16/638 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML+IIR A+ +W+ +IFL +L + F++ WG+ +++ G+ V + +
Sbjct: 1 MLDIIRNATNSWIFRIFLAILLLCFILLWGVPQ--LHKKSERDLITSGKSTVTVDDYRLA 58
Query: 60 WKQELGM--ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + +G + + + + + + L LD+ + + + +
Sbjct: 59 LADQSARLAYAAHLGRMFTANEMQQYQIPAFVFNQLQQNLLLDEQVRKMKISLSKDTIAH 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +F + F ++F + L I+E ++++YTK R ++ + M+ NL
Sbjct: 119 TIGSDKMFQV-NGTFDKNLFYNYLQHLRISESAFLNYYTKQEKRNQLIAALLSDMKAPNL 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R DY+V++ + IADP + L +WF+ ++ +RAPEY+ +S +
Sbjct: 178 FYKALALYQGEMRIADYLVIDLKEKETIADPDDEKLQKWFKTHQSQFRAPEYRTVSLLSM 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++++ K +IS DE +A Y +N ++ +PE RT E+L FP+++EAD A + + G F
Sbjct: 238 ELNDFVKPKDISTDEAKAYYTQNASRFVTPEKRTFEELQFPSREEADNAAKKIADGLSFD 297
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+L + + K+L+DI G ++ +P S ++G + VI+ G +I V++I+
Sbjct: 298 ELVKAENKTLNDIKKGPLAENELPS--HLASGIFELQQGQVSTVINDLQGPIIIRVTHIE 355
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
PS ++ F++V+++I + +A++ ++ +Y +E G S+ E++ + K+ +
Sbjct: 356 PSSSLPFEKVEENIRQTLAKNRATDDIRNNYVAIENARFEGASLKELADQYKLSLRTI-T 414
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+D GK ++G + +P K+ LL ++ ++ + D ++ +G Y+W ++ + IPARD+
Sbjct: 415 IDKTGKTLEGAILTDLPQKDILLNAIYQSNEGVDLD-PLSFQNGGYLWYKVDKIIPARDK 473
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
LEE DV WK+ + + KA + + EGK+ + + LG + TT + R
Sbjct: 474 TLEEAKLDVLSQWKSEEIQRLLDEKAQNALKQL-TEGKSLVALARTLGVTKQTTPALRRQ 532
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593
D+ + G +GI +FS P + +++++ + P + +
Sbjct: 533 DSSDP-LGVEGIKALFSAPKGHYGIIKGPVATNRIIYQIKTVTMPKDITPHTLSTEVRAN 591
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ M+ +DL ++ ++ + ++ + + +
Sbjct: 592 IDMMIREDLKLEMLQIANKEHPLEINSTNYNQIFNALQ 629
>gi|15603844|ref|NP_246918.1| hypothetical protein PM1979 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12722418|gb|AAK04063.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 626
Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats.
Identities = 115/635 (18%), Positives = 245/635 (38%), Gaps = 23/635 (3%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + +WV+K L ++ V F++ G++ +F+ +S V + +++ +F
Sbjct: 1 MLIEKLHGMTNSWVSKFLLGLIAVAFVLSGITGYVFTRVDTSAV-KINGEEISQQTFYQR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++ E + Q++G + GL + +L+NL++ L Q+ +++ + RV
Sbjct: 60 YESESERLRQQLGAQFAALSGSPEFVAGLRQSVLNNLINQELLRQYADELKIGISDERVK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
EI S F ++ KF + ++ L G+ Y + + L +
Sbjct: 120 QEIVTSQFFQ-QEGKFDNALYQRMLQLNGLTPDAYANIVREGLRLEQLQTGLAESEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
Q +F+ R+V + V S+ ++ ++E K + PE ++ Y+
Sbjct: 179 AQQAQLTELFFQARTVRLAPFSLDQVLEKQTISDEEVSAYYEANKGAFLVPELAKVQYMT 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ EK I++S+ E+ Y+ NK Y S + + + + EA E +Q+L+ G F
Sbjct: 239 LTRADVEKHIQVSDVEIAQYYQDNKALYVSQGQQRLSHIQVATEAEAKEIYQALQDGANF 298
Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
LA ++ + + L S P + + + G F+ + + I
Sbjct: 299 AGLASARSLDKISAENGGDLSWASAGTFPKA--FEEAANALQVGQFSQPVKVDDQFHIIL 356
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V+ K T+ + VK IA+Q+R + + K+L E E + +
Sbjct: 357 VTERKEPSTLPLEVVKTQIADQIRQNLVNNQYFSIEKQLAEKAFEHPEGLEKAAE--VAG 414
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + DF + + + + + + + V++ +
Sbjct: 415 LTIQETDFFSANDVPAALNYPNVISAIFHSDIS--QGGVNSEPMNVGEQHAVLVRVIANK 472
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
P R LEE D+ K K E V ++ANQ + + G +
Sbjct: 473 PEGTRSLEEAKADIISYLKRQKAEEIVLAEANQAAQRLNDNASS----TLPEGVQFGSAE 528
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--PVQEKDKF 590
+ +N + + + NG V+ ++++ + G E + F
Sbjct: 529 KWVFAENRDAALNNVIFAMSLTDNKPSYIASKASNGE-VVLVELSHIEQGALSAAESELF 587
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
L Q L ++++ L+++ + V++ Q+
Sbjct: 588 TKQLAQARQVALQNTLLQALRAKAKIEVNEKFFQQ 622
>gi|312171578|emb|CBX79836.1| putative protease maturation protein [Erwinia amylovora ATCC
BAA-2158]
Length = 623
Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats.
Identities = 114/640 (17%), Positives = 244/640 (38%), Gaps = 32/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R AS KI L ++ + F++ G+ L SG V Q++ + F ++
Sbjct: 1 MMDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSG-DYAAKVNGQEISRAQFERAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E Q +G + + ++ L L+ L Q+ +DIGL ++
Sbjct: 60 SSERARQQQMLGEQFSVLAGNDGYMQQMRQQALSQLIDEMLLTQYAKDIGLTISDDQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F KF + ++ + G +Y + K L+ ++ G
Sbjct: 120 AIFTQPAFQTAG-KFDNAKYIIIINNMGFTADQYAEALRKQLTTQQLIESVTGTDFVLGN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D + R V + +N + A + + + ++++++ + + E R+SYI
Sbjct: 179 EADSLAALVAQQRLVREVTINVNALAAKQNVTQEEIANYYQQHQSSLMSSEQFRVSYIKM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ +S ++Q+ YEK++ Y P+ + + EA LKKG F
Sbjct: 239 DAATMQQ--PVSESDIQSWYEKHQGDYTQPQRNRYSIIQTKTEAEARSVLDVLKKGGDFA 296
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+LA+E+ + +G E PD + L +KG + VI S G+++A +
Sbjct: 297 RLAKEKSADPISARNGGDMGWLEPETTPDELKRAA---LKEKGQLSGVITSSVGFIVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ +P + EV DIAN+++ KA + +++ + + + ++ E+ +
Sbjct: 354 DDTQPEKVKALSEVHDDIANKLKQEKAVVAFYKLQQKVSDAASN--DNESLASAEQAAGV 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ G D E+ ++ + + P S + + ++I E
Sbjct: 412 KAVETGWFGHDNIPAELKFKAVQDAIFNGALLGENAAPGSNSDVITVDGDRAFVLRISEH 471
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + L++V + K K ++ ++A++L+ E D K
Sbjct: 472 KPEAVKALQDVTAQITDTLKQQKGLQQAKAQADKLLAELKAGKG--DDALKAANLRFAAQ 529
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVG--PVQ 585
+ R + FS P+ + + V+ + + G P
Sbjct: 530 QTLTRTGQD------ALSQAAFSLPLPSQGKSSYGISEDAQGNVVLIALDKVQKGEMPQA 583
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K + +TQ + ++++ L+ + + +
Sbjct: 584 QKQALVQGITQNNAQLAFAAMLSNLRKEAKIKYGAAAQAQ 623
>gi|254480567|ref|ZP_05093814.1| SurA N-terminal domain family protein [marine gamma proteobacterium
HTCC2148]
gi|214039150|gb|EEB79810.1| SurA N-terminal domain family protein [marine gamma proteobacterium
HTCC2148]
Length = 626
Score = 233 bits (594), Expect = 5e-59, Method: Composition-based stats.
Identities = 97/640 (15%), Positives = 214/640 (33%), Gaps = 37/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IRK S+ +AKI + ++ V F +G+ L GS V V +++ +
Sbjct: 1 MLQDIRKNSQGTLAKIIVGIIVVAFAGFGIESILLGGGGS-AVAEVNGEEITPQELQQAV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +G ++ L ++ + L+S L Q +D+GL +V I
Sbjct: 60 NNQKRQLISMMGENLDPAMLDDQLLSQQAMQTLISRKLLVQSADDMGLTVSDTQVGALIG 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F D +FS +++ +RL G + T + V G + L+
Sbjct: 120 SMEQFQ-LDGQFSPELYRARLGEAGFTPLLFKTTLTDDIKVGQVRSGLAGSEFATPGELE 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI----- 235
R E R + YI + + A S+ + Q++ D++ + E + YI
Sbjct: 179 LNARIVGEQRDLRYITIPLETHASEAVISDPQIQQYYADNSDSFLSEEAVELDYIELRSD 238
Query: 236 ------LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
+ + EI+N + Q E + + +
Sbjct: 239 SFREAVEEQMIVDAYEQEIANSQYQTENRVSHILFEQGGDESDSSYQERLSDAQSRLAAG 298
Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+L+++ G + S LG F+ + ++I L G + + G
Sbjct: 299 EAFAAVAQELSDDIGSASSGGDLG-FTSGDAFPAEMEEAIAELELNG-ISAPVVTDAGTH 356
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
I ++ + +E++ + Q+ +++A ++ + L++ S+ + +
Sbjct: 357 IILLTERRSGEAPPLEELRAGLEEQLAMSEARVELLRMVETLKDLAFNAESLADPATELS 416
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQ 467
+ + + + L+ F D + + L ++ +
Sbjct: 417 LQIGQTEKISR-------DQKDGLFANANLIAAAFSDDVLNAGHNSDVIELDQDHWVVLS 469
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
++ PA LE+V + + V + A Q + G+ + G
Sbjct: 470 VRAHHPAEVMPLEDVQGVIVAQLTDERARAAVDAAAVQATSSL-RAGEQVEAYATSAGYQ 528
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVG- 582
+R + D + F V + + +V++VT G
Sbjct: 529 WQVELAADRRNT---MVPADILQSAFQLAAPAEGSSVIDYVLSANGDALVYEVTRVSPGE 585
Query: 583 ----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P ++ + + + + L+ ++V
Sbjct: 586 LASLPESDRAGLEQIVGGEYGQLIDNEYRQGLQDSADISV 625
>gi|187478461|ref|YP_786485.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
gi|115423047|emb|CAJ49578.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
Length = 648
Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats.
Identities = 109/652 (16%), Positives = 242/652 (37%), Gaps = 45/652 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IR R W+ I LV++ F I G+ V+ + ++G Q + F +
Sbjct: 1 MFEFIRTHRR-WMQFILLVLVVPSFAIVGVQGYSSFVNTEVELANIGGQGITQPQFDAAH 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ +L Q++G + + L +++L+ L+ L D + IA
Sbjct: 60 RNQLEQFRQRMGSQFDPAVIDTPALREQLLNQLIDQRLLLMVAADNRFSVSDETLRNTIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P D +FS + + LA +G++ + + + L+ V+ R +++
Sbjct: 120 AIPQVQD-DGRFSPERYRQVLAAQGLSPTSFENGLRRDLAVARVLEPIGLSARVPQEVVN 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
++ + R++ + + S + W++ K++ R PE + Y++ D
Sbjct: 179 NVEQALTQKRTIQLRSFLAADYRSKVNVSPQDIQAWYDANKESLRIPEQVQAQYLVLDEA 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290
+ +++ ++++ + YE+NK ++ +PE R ++ + ++
Sbjct: 239 AATQGVQVKDEDIASYYEQNKNRFGTPEQRRASHILIEAPASGEARDKARAKAEAIAREA 298
Query: 291 -KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
F +LA++ + LG + +P S+ +I L K G + V+
Sbjct: 299 AANPASFAELAKKDSQDAGSAARGGDLGWIAANSVP-PSVQQAIDGLPKDG-VSGVVESP 356
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEI 404
FG+ I V++IKP+ EVK+ I N++R AS + E +L+ S+
Sbjct: 357 FGFHIIKVTDIKPAQIKPLAEVKEQITNEIRKQLASARFAEMATKLQSAVYDQRDSLQPA 416
Query: 405 SRREKIVSIDLPLVDFAGKDVKGK---------EVAAIPYKEQLLFRVFGKDDPLSKDH- 454
+ + + +G + AA+ ++ +F D K +
Sbjct: 417 ADALGLKLRTAAGISRSGLLPADQAGAGSAAASPDAALLDNPRVRQALFANDVLREKQNT 476
Query: 455 -TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ L + + +++ P+ L++V ++ ++A+ + +
Sbjct: 477 GVIELAPDTLLALRVAVLEPSHIPPLDKVKDSIRARLLDERSAQAARQAGEEALK----- 531
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-IENGLSYV 572
++ ++R D+ + V + + + +G YV
Sbjct: 532 ----ASQAQDSDQGFSAPQTVSRQDS--GNLPRSLLEAVMRLDAAKLPAYTGVASGSDYV 585
Query: 573 VFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
V ++ + G Q S L + +V+ L+ Y V V
Sbjct: 586 VLRLDKVEAGQADPQAAATLASQLGSAWGEAEDQAVLKMLREAYKVQVLPAA 637
>gi|146282422|ref|YP_001172575.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri A1501]
gi|145570627|gb|ABP79733.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri A1501]
Length = 618
Score = 233 bits (593), Expect = 6e-59, Method: Composition-based stats.
Identities = 97/638 (15%), Positives = 226/638 (35%), Gaps = 43/638 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + V+ V + G + S + V +++ +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVVLLALTGFDAIFNAASNAQNAAEVNGEEISRYDLDQAM 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ ++Q++G + L L +L+ L Q + + I
Sbjct: 61 NMQRRQLAQQLGQDFDPSLLDDRLLRDAALGSLIDRMLLLQAAKGANFAFSREALDQLIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D F+ F + + G + ++ + + + G ++ +
Sbjct: 121 QTPEFQV-DGAFNPARFDQVIQQMGYSRLQFRQLLEQEMLIGQLRAGISGTGFVTDQQVQ 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + S+ + +++E D +R PE + Y+
Sbjct: 180 NFARLE--MQTRDFATLTVPAQHEAIEVSDEQINEFYEANADRFRTPEQVVVEYVELKKE 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQSLKKG 293
++E S++ELQ Y+K + + + DE +K G
Sbjct: 238 SFFDQVEASDEELQELYQKQIANLAEQRRAAHILIETGGELSDDEAKAKIDEIAARVKNG 297
Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ F +A+E + + G F+ + D + D++++L + G+ + + FG+ I
Sbjct: 298 EDFATVAKEVSQDPGSANEGGDLGFAGPGVYDPAFEDALYALNE-GEVSAPVKSEFGWHI 356
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ ++ SF+ +K ++ +++ + ++ E K+LE+ + + + ++ +
Sbjct: 357 IKLLGVQSPEVPSFESMKPELVRELKAQQVEQRFVETSKQLEDAAFEASDLAQPAQELGL 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQI 468
+ G + I Q++ F ++ + + L + + +++
Sbjct: 417 MVQTTEAFGREGGEG-------ITANRQVIQAAFSEEVLVDGANSSVIELDPDTAVVIRV 469
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
KE + L +V D+ + + AE ++ QL+ E + K
Sbjct: 470 KEHLKPAAIPLADVRDDIVQQLQRKLAAETARTQGEQLLAELREG--------KQPKGQW 521
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEM-----VKCFPIENGLSYVVFKVTNSKVGP 583
R + + VF P N YVV ++
Sbjct: 522 QAVEAATRSQ---EGVAPALLQAVFRMPRPEQQDKPSYSGVALNNGDYVVVRLNGVNEAD 578
Query: 584 V----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK +L M + + L+++ +
Sbjct: 579 AALSDEEKLNIRRFLASRMGQQDFAAFRQKLQAEAKIE 616
>gi|327480677|gb|AEA83987.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas stutzeri DSM
4166]
Length = 618
Score = 233 bits (592), Expect = 8e-59, Method: Composition-based stats.
Identities = 97/638 (15%), Positives = 226/638 (35%), Gaps = 43/638 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + V+ V + G + S + V +++ +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIVVLLALTGFDAIFNAASNAQNAAEVNGEEISRYDLDQAM 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ ++Q++G + L L +L+ L Q + + I
Sbjct: 61 NMQRRQLAQQLGQDFDPSLLDDRLLRDAALGSLIDRMLLLQAAKGANFAFSREALDQLIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D F+ F + + G + ++ + + + G ++ +
Sbjct: 121 QTPEFQV-DGAFNPARFDQVIQQMGYSRLQFRQLLEQEMLIGQLRAGISGTGFVTDQQVQ 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + S+ + +++E D +R PE + Y+
Sbjct: 180 NFARLE--MQTRDFATLTVPAQHEAIEVSDDQINEFYEANADRFRTPEQVVVEYVELKKE 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQSLKKG 293
++E S++ELQ Y+K + + + DE +K G
Sbjct: 238 SFFDQVEASDEELQELYQKQIANLAEQRRAAHILIETGGELSDDEAKAKIDEIAARVKNG 297
Query: 294 KKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ F +A+E + + G F+ + D + D++++L + G+ + + FG+ I
Sbjct: 298 EDFATVAKEVSQDPGSANEGGDLGFAGPGVYDPAFEDALYALNE-GEVSAPVKSEFGWHI 356
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ ++ SF+ +K ++ +++ + ++ E K+LE+ + + + ++ +
Sbjct: 357 IKLLGVQSPEVPSFESMKPELVRELKAQQVEQRFVETSKQLEDAAFEASDLAQPAQELGL 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQI 468
+ G + I Q++ F ++ + + L + + +++
Sbjct: 417 MVQTTEAFGREGGEG-------ITANRQVIQAAFSEEVLVDGANSSVIELDPDTAVVIRV 469
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
KE + L +V D+ + + AE ++ QL+ E + K
Sbjct: 470 KEHLKPAAIPLADVRDDIVQQLQRKLAAETARTQGEQLLAELREG--------KQPEGQW 521
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEM-----VKCFPIENGLSYVVFKVTNSKVGP 583
R + + VF P N YVV ++
Sbjct: 522 QAVEAATRSQ---EGVAPALLQAVFRMPRPEQQDKPSYSGVALNNGDYVVVRLNGVNEAD 578
Query: 584 V----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK +L M + + L+++ +
Sbjct: 579 ATLSDEEKLNIRRFLASRMGQQDFAAFRQKLQAEAKIE 616
>gi|254240198|ref|ZP_04933520.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 2192]
gi|126193576|gb|EAZ57639.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa 2192]
Length = 621
Score = 233 bits (592), Expect = 9e-59, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 225/639 (35%), Gaps = 42/639 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + V+ V + G + + S+ V + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L + L L+ L Q +D + I
Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KF+ D F + + + ++ + + + G ++ L
Sbjct: 121 QTPEFQV-DGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + + + S+ + ++E +K + PE + Y+
Sbjct: 180 SFARLE--KQTRDFATLAIKADASKSSVSDDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQSLKKG 293
++++ ++L+A Y+K + + + DE L KG
Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLSEQRDAAHILIEVNDKVGDEQAKAKIDEIKARLAKG 297
Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ F LA+E + + LG + + D + +++ K+G+ + + +GY
Sbjct: 298 EDFAALAKEFSQDIGSAATGGDLGYAGRG-VYDPAFEEAL-YALKQGEVSAPVKTPYGYH 355
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + ++ S + +K + ++++ ++ E K LE + + ++
Sbjct: 356 LIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEMG 415
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQ 467
+ +G D I Q++ F + + L + + ++
Sbjct: 416 LKVQTSQPFGRSGGDG-------IAANRQIVQTAFSPEVLEEAANSGAIELDPDTVVVLR 468
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+KE +++ LE+V ++++ K AEE + L+ E + + G S
Sbjct: 469 VKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAELREGRTS-----SAAGES 523
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG-----LSYVVFKVTNSKVG 582
+R + + VF K P +G YVV ++
Sbjct: 524 WKVVEAASRGQ---EGVDPKLLQAVFRMQRPEAKDKPSLSGVTLANGDYVVIRLNGVSEP 580
Query: 583 PV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK + +L + + L+ + V
Sbjct: 581 EEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619
>gi|152980145|ref|YP_001353225.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp.
Marseille]
gi|151280222|gb|ABR88632.1| peptidyl-prolyl cis-trans isomerase [Janthinobacterium sp.
Marseille]
Length = 638
Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats.
Identities = 102/653 (15%), Positives = 221/653 (33%), Gaps = 38/653 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + IR R + + L+V+F F ++GL S+TV V Q + + +
Sbjct: 1 MFDFIRTHQR-LMQFLLLLVIFPSFALFGLESYTSMGDSSTTVAKVDGQAITQPEWDAAQ 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ Q G + + + + +LD L++ L + L + I
Sbjct: 60 REQMERFRQMFGGQFDPKMFDTPEAKQDVLDGLIAQRVLAAEAKRNKLSVSDQTLQQTIM 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
D KF + + S LA +G+ Y + L V + L
Sbjct: 120 GIAGLTTADGKFDVERYKSLLAAQGMTPAMYEASLRQDLIVQQVNAAIQSTAFAPDSLAQ 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R V Y+ + ++ +L ++ + + PE + Y++
Sbjct: 180 RLSELGEQEREVQYLTFKAADYASQVKVTDDMLKAYY-DKSNEFSVPEQVKAEYVVLTAD 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----------- 289
+I +S+ ++++ YE+N ++Y E R ++ K+A A ++
Sbjct: 239 ALASQINVSDADIKSYYEQNAKQYGVDEQRRASHILIAANKDAPAAEKAAAKAKAEKLLE 298
Query: 290 --LKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
K + F +LA+E L FSK + + K+G+ + ++
Sbjct: 299 TLRKSPQDFAKLAKENSNDPGSAERGGDLDFFSKGMMVKPFEDAA--FKLKQGELSDLVE 356
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMD 402
+G+ I V+ IKP+ ++VK DIAN +R ++K E S+
Sbjct: 357 SDYGFHIIKVTAIKPATLKPLEQVKGDIANDIRKQLVTKKYAETADVFSNTVYEQSDSLK 416
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
++ + K+ + + K V + +
Sbjct: 417 SVADKLKLKIETVNNLSRQPNPAVAATAPFNSPKFLSALFSEDSLKNKRNTEAVEVAPNT 476
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ ++ + PA R +EV V+ + + + + K
Sbjct: 477 LIAGRVVDYKPASKRPFDEVKAQVRDRVIQTEALVLAKNAGEEKLAALK---------AK 527
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSK 580
+ + T ++R + + V + + G Y V +VT
Sbjct: 528 DDASGFSATQTVSRAKS--QGVNPALFLAVMKADTSKLPSYVGVEVPGQGYGVLRVTRVV 585
Query: 581 VG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
++ +T + ++ + + + LK + V + + + E
Sbjct: 586 QPSNVDKAKRQAEQQQITAALAQEEMQAYLDVLKEKAKVKIIKPAVAKADGAE 638
>gi|311106582|ref|YP_003979435.1| peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans A8]
gi|310761271|gb|ADP16720.1| peptidyl-prolyl cis-trans isomerase [Achromobacter xylosoxidans A8]
Length = 653
Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats.
Identities = 101/663 (15%), Positives = 232/663 (34%), Gaps = 46/663 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IR R W+ I L+++ F + G+ + + +V Q V + F +
Sbjct: 1 MFEFIRSHRR-WMQFILLLLIVPSFFLVGIQGYDSFMRAEPELATVNGQPVTRAEFDQAH 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ +L Q++G + + L + +L+ L++ L D + IA
Sbjct: 60 RNQLEQFRQRLGAQFDPAVIDTPALREGLLNQLINQRLLANVAVDNRFSVSDETLRNTIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P + +FS + + LA +G++ + + L+ V+ R ++
Sbjct: 120 AIPEVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLEPVGQSARAPGEVVA 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R+V + + A + W++ K + PE ++ Y++ D
Sbjct: 179 ALETALTQQRTVQLRRFAAADFRSQVSATPADIQAWYDANKQQLQIPEQVQVQYLVLDEA 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------------F 287
+ +++ +++L + YE+NK ++ PE R ++ A E
Sbjct: 239 AATQGVQVKDEDLASYYEQNKNRFGQPERRRASHIMINLAPGASEDARKAARAKAEDLAK 298
Query: 288 QSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
Q+ +F +LA + + + LG + + + K + VI
Sbjct: 299 QAAADPAQFAELARKNSQDAGSAANGGDLGWLAPGMLTGP--LEKAIFGQAKDQVSGVIE 356
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR-LEEFLALGTSMD 402
G + V+ I+P+ EVK I ++R A+ + E + ++ S+
Sbjct: 357 TPSGLHVVKVTEIQPAAIKPLAEVKDQITAEVRKQLAAVRFSEMASQLNKQVYDQRDSLQ 416
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD-----------PLS 451
+ + V G K +
Sbjct: 417 PAADTVGLKLRTASGVTREGLLPADKAGPGSAAASPDAALLDNPRVRQVLFSPDVLREKQ 476
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ L + + +++ PA L++V ++ ++AE +
Sbjct: 477 NSGVIELSPDTMLALRVAAVEPAHVPPLDKVSEIIRAKLLDERSAEAAKKA---GEAALA 533
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-IENGLS 570
+ N + GA ++ ++R D ++ + V P + + +++G
Sbjct: 534 ADQANPAATPEGFGAPVI----VSRQDPKD--LPRPVLDAVMRLPATTLPAYAGVQSGAD 587
Query: 571 YVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
Y + ++ + G +K++ L+ + ++++ L+ +Y V V +
Sbjct: 588 YTLARLEKVEAGTVDPADKERLAQQLSGAWGQAENEALVRMLREEYKVQVLPAAA-AVIR 646
Query: 629 GEK 631
GE+
Sbjct: 647 GEQ 649
>gi|163868048|ref|YP_001609252.1| peptidyl-prolyl cis-trans isomerase D [Bartonella tribocorum CIP
105476]
gi|161017699|emb|CAK01257.1| peptidyl-prolyl cis-trans isomerase D [Bartonella tribocorum CIP
105476]
Length = 628
Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats.
Identities = 151/638 (23%), Positives = 315/638 (49%), Gaps = 17/638 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML++IR A+ +W+ +IFL +L + F++ WG+ +++ G+ + + +
Sbjct: 1 MLDVIRSAANSWIFRIFLAILLLCFILLWGIPQ--LHTKSERDLITSGKSIITIDDYRLA 58
Query: 60 WKQELGMISQK--IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ ++Q +G + + + + + L LD+ + + +
Sbjct: 59 LADQSARLAQAAHLGRMFTPNEMQQYQIPAFVFNQLQQNVLLDEQARKMKISLSKDTIAH 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +F + F+ D+F + L I E ++++YTK R ++ + M+ NL
Sbjct: 119 TIGSDKMFQ-INGTFNKDLFYNYLQHLRIGESAFLNYYTKQEKRNQLIAALLSDMKAPNL 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E RS DY++++ + IADP + L +WFE ++ +RAPEY+ +S +
Sbjct: 178 FYKALALYQEEKRSADYLIIDLKEQ-TIADPDHETLQKWFETHQSEFRAPEYRTVSLLSM 236
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++++ K +IS DE +A Y +N + +PE RT E+L FP ++EAD A + + G F
Sbjct: 237 ELNDFVKPKDISTDEAKAYYTQNTSHFVTPEKRTFEELRFPTREEADNAAKKIADGLSFD 296
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+L + + K+L+DI G ++ +P+ S ++G +PVI+ G V+ V++I+
Sbjct: 297 ELVKAEKKTLNDIKKGPLAENELPN--HLASEIFELQQGQVSPVINDLQGPVLIRVTHIE 354
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
PS ++ F+ V++ I + +A++ ++ +Y +E G S+ E++ + K+ +
Sbjct: 355 PSSSLPFESVEESIRQTLAKNRATDDIRNNYVAIENARFEGASLKELADQYKLSLRTI-T 413
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+D GK ++G+ + +P K+ LL ++ ++ + D ++ +G Y+W ++ + IPARD+
Sbjct: 414 LDKTGKTLEGETLTDLPQKDALLDAIYQSNEGVDLD-PLSFQNGGYLWYKVDKIIPARDK 472
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
LEE DV WK+ +T + KA L+ EGK+ D+ + LG + TT + R
Sbjct: 473 TLEEAELDVLSQWKSEETQRLLDEKAQN-ALKQFMEGKSLVDLARTLGVTKQTTPPLRRQ 531
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISY 593
D + G +G+ +FSGP + +++++ + + P + +
Sbjct: 532 DPF-EILGVEGVKALFSGPKGHYGIIKGPVATNRIIYQINSVTMPKDITPHTLSPEVRTN 590
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ M+ +DL ++ ++ + ++ + + +
Sbjct: 591 IDMMIREDLKLEMLQIANKEHPLEINSKNYNQIFNALQ 628
>gi|119945205|ref|YP_942885.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
ingrahamii 37]
gi|119863809|gb|ABM03286.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
ingrahamii 37]
Length = 631
Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 110/638 (17%), Positives = 252/638 (39%), Gaps = 32/638 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R+ ++ AKI +VV+ + F + G+S L SG S V+V +++ ++ ++
Sbjct: 1 MLDKMREGAQGATAKIIIVVIILSFALAGVSSYL-GGSGISVAVTVNDEEISKATVDQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q+ G S + + ++ + ++S L Q I+D+GL +V
Sbjct: 60 QNERTRLEQQYGEQFALLASTPNFNQKIRQQAMQTVISERLLTQAIKDMGLRIGDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI + F D F+++ ++S L R ++ + L+R ++ M +G +
Sbjct: 120 EIRKMKEFQV-DGNFNNEQYLSLLRRASYTPAQFSQSIKQDLARRQLLTMVLGSEFILPM 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ QA R + R + + S ++ ++E ++ E + Y++
Sbjct: 179 EVQQANRLQAQKRVARVLTVKASDFADKDPISEQEISTYYENNSQFFQTAEQVSVDYVVL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-----FPNQKEADEAFQSLKK 292
D ++ +S++EL+ Y+ + Y E R V ++ +++A L++
Sbjct: 239 DGSLLADRVTLSSEELEKYYDMHASDYQRGEKRKVAHILLLGDNSAAKEKAQAILSELEE 298
Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F QLA ++ + ++ L F + + D + D+ F L K+ + ++ FGY
Sbjct: 299 GADFAQLAAQKSEDSYSAENNGELDWFERGVM-DPAFDDAAFKLTKEAPLSNIVKSQFGY 357
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I + +I+ S + EV + N + + + E ++RL E + + R
Sbjct: 358 HIIKLVDIQESKKLPLSEVTAQVENAAKREEMNNLYYELHQRLSEAAFERPDNLDEAAR- 416
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
++ D+ + + + + + F +D + L + + V +
Sbjct: 417 -VLGTDIQHTELFSAAEAPEPLTDNAVLKIVFDSAFREDRM--NSELIELSENKVIVVHV 473
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
A + L +V + + K + L+++ K ++ I +
Sbjct: 474 NRYQAAALQPLADVSEQIIAQLQAQKAHKNTEEFVKSLMVKL-KAQESIETILTEKNLAF 532
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNSKVGPV 584
+ R D+E Y + VF + + + Y + ++T+ +
Sbjct: 533 SDPSTFTRNDSE---LDYRVMQAVFKLAKPTEQQATYDWVTTSTDDYALIELTSVEELDS 589
Query: 585 QEK-----DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ K K L ++ ++ ++ L + +
Sbjct: 590 ELKNVDKIQKLEERLQRLFSESTYQALSMALMANADIK 627
>gi|15597002|ref|NP_250496.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1]
gi|107101237|ref|ZP_01365155.1| hypothetical protein PaerPA_01002270 [Pseudomonas aeruginosa PACS2]
gi|9947788|gb|AAG05194.1|AE004606_8 peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PAO1]
Length = 621
Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 226/639 (35%), Gaps = 42/639 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + V+ V + G + + S+ V + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L + L L+ L Q +D + I
Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KF+ D F + + + ++ + + + G ++ L
Sbjct: 121 QTPEFQV-DGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + + + S+ + ++E +K + PE + Y+
Sbjct: 180 SFARLE--KQTRDFATLAIKADASKSSVSDDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQSLKKG 293
++++ ++L+A Y+K + + + DE L KG
Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLSEQRDAAHILIEVNDKVGDEQAKAKIDEIKARLAKG 297
Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ F LA+E + + LG + + D + +++ K+G+ + + +GY
Sbjct: 298 EDFAALAKEFSQDIGSAATGGDLGYAGRG-VYDPAFEEAL-YALKQGEVSAPVKTPYGYH 355
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + ++ S + +K + ++++ ++ E K LE + + ++
Sbjct: 356 LIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEMG 415
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQ 467
+ +G D I Q++ F + + L + + ++
Sbjct: 416 LKVQTSQPFGRSGGDG-------IAANRQIVQTAFSAEVLEEAANSGAIELDPDTVVVLR 468
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+KE +++ LE+V ++++ K AEE + L+ E + + G S
Sbjct: 469 VKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAELREGRTS-----SAAGES 523
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG-----LSYVVFKVTNSKVG 582
+R ++ + VF K P +G YVV ++
Sbjct: 524 WKVVEAASRG---HEGVDPKLLQAVFRMQRPEAKDKPSFSGVTLANGDYVVIRLNGVSEP 580
Query: 583 PV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK + +L + + L+ + V
Sbjct: 581 EEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619
>gi|116049755|ref|YP_791438.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
UCBPP-PA14]
gi|313110502|ref|ZP_07796387.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
aeruginosa 39016]
gi|115584976|gb|ABJ10991.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
aeruginosa UCBPP-PA14]
gi|310882889|gb|EFQ41483.1| putative peptidyl-prolyl cis-trans isomerase D [Pseudomonas
aeruginosa 39016]
Length = 621
Score = 232 bits (590), Expect = 2e-58, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 224/639 (35%), Gaps = 42/639 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + V+ V + G + + S+ V + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L + L L+ L Q +D + I
Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KF+ D F + + + ++ + + + G ++ L
Sbjct: 121 QTPEFQV-DGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + + + S + ++E +K + PE + Y+
Sbjct: 180 SFARLE--KQTRDFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQSLKKG 293
++++ ++L+A Y+K + + + DE L KG
Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLSEQRDAAHILIEVNDKVGDEQAKAKIDEIKARLAKG 297
Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ F LA+E + + LG + + D + +++ K+G+ + + +GY
Sbjct: 298 EDFAALAKEFSQDIGSAATGGDLGYAGRG-VYDPAFEEAL-YALKQGEVSAPVKTPYGYH 355
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + ++ S + +K + ++++ ++ E K LE + + ++
Sbjct: 356 LIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEMG 415
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQ 467
+ +G D I Q++ F + + L + + ++
Sbjct: 416 LKVQTSQPFGRSGGDG-------IAANRQIVQTAFSPEVLEEAANSGAIELDPDTVVVLR 468
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+KE +++ LE+V ++++ K AEE + L+ E + + G S
Sbjct: 469 VKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAELREGRTS-----SAAGES 523
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG-----LSYVVFKVTNSKVG 582
+R + + VF K P +G YVV ++
Sbjct: 524 WKVVEAASRGQ---EGVDPKLLQAVFRMQRPEAKDKPSLSGVTLANGDYVVIRLNGVSEP 580
Query: 583 PV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK + +L + + L+ + V
Sbjct: 581 EEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619
>gi|66769563|ref|YP_244325.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
campestris str. 8004]
gi|66574895|gb|AAY50305.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
campestris str. 8004]
Length = 656
Score = 232 bits (589), Expect = 2e-58, Method: Composition-based stats.
Identities = 108/672 (16%), Positives = 225/672 (33%), Gaps = 65/672 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA P F D KFS D + + LA+ ++
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ E R V+ +L A S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLTLMGETRDVELAMLPEPTADT-APVSDAQIKQWYD 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + L+ YE+ K ++ P+ R ++
Sbjct: 238 GHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297
Query: 279 NQKEADEAFQ-----------SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+A + + G F LA+ + LG K +
Sbjct: 298 AGSDAAAQKAGEEKAAKLAAQAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K GD I FGY + + +K SF++V+ +A + A +
Sbjct: 358 --FEDALFAMKAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L I +L
Sbjct: 416 FADLSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRTDASG-------IAANPAVLRS 468
Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
F + + + + + +++ + L++V V +T +
Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQTLPLDKVREKVIAAVHADRTKKSAV 528
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+ A+ L+ K G+ + + + + R +FS P
Sbjct: 529 AAADALLARVQK-GETLQSLAAAEKLQVTPIPGLPRTAPVPT---PAANRAIFSAPRPTE 584
Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
+ G Y VF V+ S G P +++ L+Q+ + + + ++
Sbjct: 585 GKPSVGKVELTGGRYAVFVVSKSTPGDLKQMPAEQQTMLREQLSQIDGGNAAQAYVKEMR 644
Query: 612 SQYSVTVHDNLI 623
+Y + + + +
Sbjct: 645 KRYKIQIEEAQL 656
>gi|254234899|ref|ZP_04928222.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
C3719]
gi|296389804|ref|ZP_06879279.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas aeruginosa PAb1]
gi|126166830|gb|EAZ52341.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
C3719]
Length = 621
Score = 232 bits (589), Expect = 2e-58, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 224/639 (35%), Gaps = 42/639 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + V+ V + G + + S+ V + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L + L L+ L Q +D + I
Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KF+ D F + + + ++ + + + G ++ L
Sbjct: 121 QTPEFQV-DGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + + + S + ++E +K + PE + Y+
Sbjct: 180 SFARLE--KQTRDFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQSLKKG 293
++++ ++L+A Y+K + + + DE L KG
Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLSEQRDAAHILIEVNDKVGDEQAKAKIDEIKARLAKG 297
Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ F LA+E + + LG + + D + +++ K+G+ + + +GY
Sbjct: 298 EDFAALAKEFSQDIGSAATGGDLGYAGRG-VYDPAFEEAL-YALKQGEVSAPVKTPYGYH 355
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + ++ S + +K + ++++ ++ E K LE + + ++
Sbjct: 356 LIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEMG 415
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQ 467
+ +G D I Q++ F + + L + + ++
Sbjct: 416 LKVQTSQPFGRSGGDG-------IAANRQIVQTAFSAEVLEEAANSGAIELDPDTVVVLR 468
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+KE +++ LE+V ++++ K AEE + L+ E + + G S
Sbjct: 469 VKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAELREGRTS-----SAAGES 523
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG-----LSYVVFKVTNSKVG 582
+R + + VF K P +G YVV ++
Sbjct: 524 WKVVEAASRGQ---EGVDPKLLQAVFRMQRPEAKDKPSLSGVTLANGDYVVIRLNGVSEP 580
Query: 583 PV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK + +L + + L+ + V
Sbjct: 581 EEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619
>gi|94987556|ref|YP_595489.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
PHE/MN1-00]
gi|94731805|emb|CAJ55168.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
PHE/MN1-00]
Length = 629
Score = 232 bits (589), Expect = 2e-58, Method: Composition-based stats.
Identities = 108/643 (16%), Positives = 222/643 (34%), Gaps = 36/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR +++W KI ++ + F+ WG+ S VVSV Q +
Sbjct: 1 MLDFIRSNAQSWGVKIAFGLIIIVFIFWGIG--TLSGGPEVEVVSVNGQSITIQELQKRC 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ I Q +++ + + + L+ + Q IGL + I
Sbjct: 59 EEIEQNIRQNF-PTISAAEINTFRIKQLATQQLILETLVLQEANRIGLIITPIELRKTIE 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF +++ L + L + G S
Sbjct: 118 SFPAFHNTEGKFDPAIYLQFLKERNDTPGHFESQIRTNLLINKIQQEITAGAYISPTEAY 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R++ Y++ + S + +++ + + ++ P + Y+L
Sbjct: 178 DVYMYESATRTIQYLLFPTEDYLNKVNISADEVAKFYNESSEQFKTPTELNLEYLLITPR 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV------------FPNQKEADEAFQ 288
I + + Y+K+KE + SPE + +V Q++ ++A
Sbjct: 238 SLANNQTIDDTTVSEYYQKHKEDFKSPEQIHAQHIVVFAPENSEPEVLKKAQEKINQAAN 297
Query: 289 SLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
++KKG+ F +A++ + + LG F+ E + G+ + I
Sbjct: 298 AIKKGEDFSSVAKKFSQDNVAQNGGDLGWFTYEQAVPAFADVA--FSLTPGEISQPIQTP 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
GY I + + KP SF EV K I ++ KAS ++++ + ++ L S+ E
Sbjct: 356 VGYHIIKLIDKKPEEIKSFDEVSKTIQQRLAEDKASIELQDVLENVQLALIENKSLTEAG 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + I G + + + P + + Y+
Sbjct: 416 KPYNLSPIST------GLFPIKDIASQLELAKPDELSKLTHVSPGTILENPLITKTGYVI 469
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++K+ P + +E V + K K E A + + I +
Sbjct: 470 IKVKDIKPESIKSIEVVENQISSLLKKQKANELAMKAAEEQLTILKNS-----SIPPAVA 524
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+L T+ I R + F P ++ V+ V P +
Sbjct: 525 KNLKTSPAIIRSATIENLKNPQLVPDTFKATPGSWLTTPYTVEQGVLIAYVSKEVVYPSK 584
Query: 586 E-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
E K+ F+S + + + + + L+ Q +T+ + I
Sbjct: 585 EQWDNIKEAFMSAIVKSKREQMFKGFLTMLEKQAKITIKEEKI 627
>gi|146279132|ref|YP_001169291.1| hypothetical protein Rsph17025_3102 [Rhodobacter sphaeroides ATCC
17025]
gi|145557373|gb|ABP71986.1| hypothetical protein Rsph17025_3102 [Rhodobacter sphaeroides ATCC
17025]
Length = 655
Score = 232 bits (589), Expect = 2e-58, Method: Composition-based stats.
Identities = 124/628 (19%), Positives = 258/628 (41%), Gaps = 31/628 (4%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
+K V + ++ V +G+++ G STV SVG + + + + + +QE+
Sbjct: 47 KKKGTQIVFWGLVALMAVGLGGFGVTNF---GGGLSTVGSVGDRDITTADYARALQQEMR 103
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ +I V E AR+ GLD+++ LV+ A L + +GL RV EI S F
Sbjct: 104 ALGAQINQPVTMEMARAFGLDQQVRRRLVTQAALSNEADRVGLSVGDARVAEEITGSDSF 163
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
HG +F + + L + ++E E+ + + +SR+ + G GG L+D +
Sbjct: 164 HGPSGQFDRETYRLVLRQNNLSESEFENGLREDISRSLLQGAVGGGFVAPAALVDTLHAY 223
Query: 186 YFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
E RS + + ++ A +P+ L W+E + ++ APE KRI+Y E
Sbjct: 224 IAERRSFSLLRVQEANLGAPLPEPTEDELQAWYEAHPADFTAPERKRITYAALLPQEVAP 283
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
+ + + L+ Y++ ++ PE R VE+L F + A EA + +G F L E+G
Sbjct: 284 TLPVDEEALRRLYDQRLGEFVQPERRLVERLAFSTPEAAAEARARIDEGTPFETLVSERG 343
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
L DI +G +++ + + +++F+L + G + G + V+ + + F
Sbjct: 344 LELIDIDMGDVTRDELGAAA--EAVFALTEPG-IAGPVETGLGPALFRVNGVIAAQETPF 400
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
+ V+ D+ + + A+ + ++++ LA G +++E+ + + D
Sbjct: 401 EAVRDDLLAEYQQDAAARAISGRRDQIDDLLAAGATLEELGTEAGMKIATVDYAPGLDSD 460
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+ G + P TV L DG + +++ E +P + + EEV
Sbjct: 461 IAGY---------EAFRTAADALQPDDFPETVQLNDGGLLAMRLDEVVPPQLKPFEEVRD 511
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
+V + + ++ + + ++EG + G + + R +
Sbjct: 512 EVAEAVRAD-ALDKALAARAAEIATAAEEGTDLGSFG-----PVEDLGPMTRDGFV-ENV 564
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMM 598
++ F ++ V ++ + + K + + Q +
Sbjct: 565 PETLVTTAFGMEEGALRAIDGPGFAG--VLRLDTVEPAAGDDEAARALKASLSAQIEQAL 622
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++D L L + +T++D I
Sbjct: 623 SQDALALFSNSLMQEAGITLNDAAISAV 650
>gi|157369342|ref|YP_001477331.1| peptidyl-prolyl cis-trans isomerase D [Serratia proteamaculans 568]
gi|157321106|gb|ABV40203.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Serratia
proteamaculans 568]
Length = 627
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 118/637 (18%), Positives = 256/637 (40%), Gaps = 24/637 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + FL+ G+ S V Q + + ++
Sbjct: 1 MMDNLRAAANHVVLKIILGLIILSFLLTGVVSY--QGSAGDYAAKVNGQVIERAQLEQAF 58
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++ + + L L+ LDQ+ + +GL +V
Sbjct: 59 QSERSRMQQQLGDQFSALAGNEGYMQQMRHQALSQLIDNMLLDQYAKKLGLSVSDDQVKE 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F + +F + ++ ++R G + + L V+ F G
Sbjct: 119 AIRKAPYFQT-NGQFDNAKYLDLISRMGYTADNFAQSMRQQLVNQQVIQAFGGSGFILPA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R V L+ + + A ++ L ++ + K+++ APE ++SYI
Sbjct: 178 EAQDMTALVLQQRDVRLATLDLKALQAKQTVTDDELKDYYSQNKNSFIAPEQVKVSYIPM 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + K+ +++ ++ A Y+++K Y PE + + + EA+ LKKG F
Sbjct: 238 DAAAMQDKVTVADADISAYYDQHKSSYGQPERKNYSVIQLKTEAEANAVLDELKKGGDFA 297
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA+++ + G PD + + +L +KG + V+ S GY++ +++I
Sbjct: 298 TLAKDKSTDIISRRTGGELGWLEPDTTADELKQANLTEKGQLSGVVKSSVGYLVIRLNDI 357
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
P EV+ IA Q++ KA + +++ E + + ++ E+ +
Sbjct: 358 APEKVKPLSEVRDAIAKQVKQEKAVDAYYALQQKVSEA--ATSDNESLASAEEAAGVKAA 415
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
D+ +D + P + + + P S + + +++ P
Sbjct: 416 QTDWFTRDNIPAALNFKPVIQSIFDGSLIGEGGSPGSNSDVITVDGDRAFVIRVSGHKPE 475
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V V + K K +E + +L++E + + K G S + ++
Sbjct: 476 GIEPFDQVKDRVAELVKRNKAEQEAKLQGEKLLVELKQGKG--DEAMKAAGLSFGSVQKM 533
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
R +++ + VF+ P V + + V+ + K G P +E
Sbjct: 534 ARAPEDSQ-----LVQSVFALPHPQEGKPVYGMSQDRQDNVVLIALDAVKPGTLPAEEMK 588
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
F+S + + DS++A L+ + +T+ Q+
Sbjct: 589 TFVSKMEEGATGVSFDSLLASLRKEAKITMGAAEQQQ 625
>gi|218892241|ref|YP_002441108.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
LESB58]
gi|218772467|emb|CAW28249.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa
LESB58]
Length = 621
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 225/639 (35%), Gaps = 42/639 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + V+ V + G + + S+ V + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L + L L+ L Q +D + I
Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KF+ D F + + + ++ + + + G ++ L
Sbjct: 121 QTPEFQV-DGKFNADRFDQVIRQMNYSRMQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + + + S + ++E +K + PE + Y+
Sbjct: 180 SFARLE--KQTRDFATLAIKADASKSSVSEDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQSLKKG 293
++++ ++L+A Y+K + + + DE L KG
Sbjct: 238 SFFDQVKVKQEDLEALYQKEIANLSEQRDAAHILIEVNDKVGDEQAKAKIDEIKARLAKG 297
Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ F LA+E + + LG + + D + +++ K+G+ + + +GY
Sbjct: 298 EDFAALAKEFSQDIGSAATGGDLGYAGRG-VYDPAFEEAL-YALKQGEVSAPVKTPYGYH 355
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + ++ S + +K + ++++ ++ E K LE + + ++
Sbjct: 356 LIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEMG 415
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQ 467
+ +G D I Q++ F + + L + + ++
Sbjct: 416 LKVQTSQPFGRSGGDG-------IAANRQIVQTAFSAEVLEEAANSGAIELDPDTVVVLR 468
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+KE +++ LE+V ++++ K AEE + L+ E + + G S
Sbjct: 469 VKEHNKPKEQPLEQVAANIRERLAAEKAAEEAQKRGEALIAELREGRTS-----SAAGES 523
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG-----LSYVVFKVTNSKVG 582
+R ++ + VF K P +G YVV ++
Sbjct: 524 WKVVEAASRG---HEGVDPKLLQAVFRMQRPEAKDKPSFSGVTLANGDYVVIRLNGVSEP 580
Query: 583 PV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK + +L + + L+ + V
Sbjct: 581 EEAISDDEKAMYRRFLASRSGQADFAAFRRQLQDKAEVE 619
>gi|126737880|ref|ZP_01753610.1| hypothetical protein RSK20926_19602 [Roseobacter sp. SK209-2-6]
gi|126721273|gb|EBA17977.1| hypothetical protein RSK20926_19602 [Roseobacter sp. SK209-2-6]
Length = 613
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 130/633 (20%), Positives = 255/633 (40%), Gaps = 32/633 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M +++ S+T+V I + +L V +G A+ S+V VG ++V +
Sbjct: 1 MAAGMKQLSKTFV-WILMGMLIVGLAGFG---AVNFSGSVSSVALVGDEEVSVEEYFREL 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++E + Q+ G VV + + GLD+ +L L+S A LD + +G+ + E+
Sbjct: 57 QREQRSLQQQTGQVVTLAQMTAFGLDRAVLGRLISLAALDNEVNSLGISIGDENLLDELT 116
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F G F + + L + E E+ K +RT V G + + L D
Sbjct: 117 QIPSFQGPSGNFDREAYRFALQNANLTEAEFEADLRKEAARTLVQGAIISNAEMPSTLAD 176
Query: 181 QAKRFYFENRSVDYI-VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
++ RS Y+ + + P +A L ++E + +R PE K+I+Y
Sbjct: 177 TLTKYIGARRSFSYVLLEPAQFSLIQIVPDDAELKSFYEANPEAFRLPETKQITYARLSP 236
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298
IE+ + L+A YE+ K++Y PE R VE+LVF +Q AD A L+ G F +
Sbjct: 237 DMILDGIEVDAEALKALYEERKDQYQVPERRLVERLVFSDQAAADRATADLQAGTVTFEE 296
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
L +G L DI +G +KE + A A G + + G I ++
Sbjct: 297 LVGNRGLDLQDIDMGDVTKEDL---GAAAEGVFAAAVGSVSSPLPSDLGPAIFRINGQLD 353
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ SF+ + ++ ++ +A +++ + +++ LA G +++E+ + L
Sbjct: 354 ARITSFEAAEAELRQELAADRARRVIEQQAESIDDILAGGATLEELKDEADMEVATLGWT 413
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
G + + L DGS +++ E +P R
Sbjct: 414 GIPGDGI---------AAYEGFRTAADAVTLEDFPAVEFLGDGSIFALRLDEVLPERPEP 464
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
+ V W + A+ ++++A +++ G D + T + R
Sbjct: 465 FDAAKEKVLAAWDADRQAKAITARAGEILTATKNAGAFPDD------LEVATEEGLTRTA 518
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISY 593
++ D ++Q+F+ VK E+ VV ++ E ++ F +
Sbjct: 519 YLDRT-PADMMNQIFTMTPGEVKIITGEDST--VVVSLSEILPAEEGEEMALMREAFTAQ 575
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L Q ++ L + ++ + + + + +
Sbjct: 576 LDQALSNALFQAYVSDAQLRAAPRLDQQALNAV 608
>gi|327484462|gb|AEA78869.1| Peptidyl-prolyl cis-trans isomerase ppiD [Vibrio cholerae
LMA3894-4]
Length = 616
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 116/627 (18%), Positives = 245/627 (39%), Gaps = 27/627 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S ++ ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGNNAAA----NAEISRGDFEQAY 56
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ + A K +LD +V+ L+Q +GL +V
Sbjct: 57 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 116
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + F + + L R G + Y ++ K L R ++ G
Sbjct: 117 LILEIPQFQSQG-VFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLAG 175
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + PE ++SY+
Sbjct: 176 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIDQYYKTNTERFTRPEQVKVSYVEL 235
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++ + + Q Y+++ +KY + E R V ++ E L G
Sbjct: 236 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 295
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + SLG + + D + + F+L +KG + ++ FGY I
Sbjct: 296 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 354
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +IK + EV++ I ++ +A + LE+ + + + K +
Sbjct: 355 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEA--AKAI 412
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + + + P Q L K+D L+ + + + V+++E
Sbjct: 413 SATVVHTDFISAEQAPEVLTT-PAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEEF 470
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV + V + +K ++ NQLV K G+ D+ G S
Sbjct: 471 RPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGEL 527
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590
I+R Q E V + + VV +++ + ++
Sbjct: 528 QMIDRSSPLANTVYAMVKPQ----EGEKVYAQAKDFDGNIVVIELSKVESKLTPAYHEQI 583
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L ++ ++ L VI+ L+ +
Sbjct: 584 ATQLERIGSQQDLAGVISVLRQNTDIE 610
>gi|188534628|ref|YP_001908425.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Erwinia
tasmaniensis Et1/99]
gi|188029670|emb|CAO97549.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia tasmaniensis Et1/99]
Length = 622
Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats.
Identities = 114/639 (17%), Positives = 249/639 (38%), Gaps = 32/639 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++ +R AS KI L ++ + F++ G+ L SG V Q++ + ++
Sbjct: 1 MDNLRAASNHVALKIILGLIILSFVLTGVGGYLTGGSG-DYAAKVNGQEISRAQLERAFS 59
Query: 62 QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
E Q +G + S + ++ L L+ L Q+ +DIGL ++
Sbjct: 60 SERARQQQMLGEQFSVLASNEGYMQQMRQQTLSQLIDEVLLTQYAKDIGLTIGDDQIKQA 119
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I P F +F + ++S + G + +Y + K L+ ++
Sbjct: 120 IFTQPAFQTAG-QFDNAKYLSIINNIGFSADQYAEALRKQLTTQQLINAVTKTDFVLGNE 178
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
D + R V + ++ + A D + ++ ++++++ + + E R+SYI D
Sbjct: 179 ADSLAALVSQQRLVREVTIDVNALAAKQDVTQEEISNYYQQHQSSLMSSEQFRVSYIKMD 238
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
E+ +S ++Q+ YEK+++ Y P+ + + EA SLKKG F +
Sbjct: 239 AAAMEQ--AVSESDIQSWYEKHQDDYTQPQRNRYSIIQTNTEAEARSVLDSLKKGDDFAK 296
Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+E+ + +G + PD SL +KG + VI S G++IA +
Sbjct: 297 LAKEKSVDPISARNGGDMGWLEPQTTPDEL---KGASLKEKGQLSGVITSSPGFIIARLD 353
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+P EV DIA +++ KA + +++ + + + ++ E++ +
Sbjct: 354 ETQPEKVKPLSEVHDDIAAKLKQEKAVAAFYKLQQKVSDAASN--DNESLASAEQVAGVK 411
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
D+ +D ++ ++ + + P S +++ ++I E
Sbjct: 412 AVDTDWFDRDNLPADLKFKAVQDAIFNGALLGENGAPGSNSDVISVDGDRAFVLRIHEHK 471
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
P + L++V + K K ++ ++A++L+ E D K
Sbjct: 472 PEAVKPLKDVTAQITATLKQQKALQQAKTQADKLLAELKAGKG--DDALKAADLKFAAQQ 529
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQE 586
+ RM + FS P+ ++ + V+ + + G P +
Sbjct: 530 TLTRMGQD------ALSQAAFSLPLPSEGKPSYGVSEDDKGNVVLIALDKVQKGEIPEAQ 583
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
K + +TQ + ++++ L+ + + +
Sbjct: 584 KQSLVQGITQNNAQLAFAAMLSNLRKEAKIKYGAAAQAQ 622
>gi|149378497|ref|ZP_01896176.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
DG893]
gi|149357219|gb|EDM45762.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
DG893]
Length = 608
Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats.
Identities = 113/624 (18%), Positives = 245/624 (39%), Gaps = 30/624 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR+ ++ +AKI + +L V IWG+ + SG V +V + + F+ +
Sbjct: 1 LQDIRENAQGTIAKIIIGLLIVSLSIWGMDAIVGGFSGEPEVATVNGEDITEREFLRVVQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
E ++ + + + +LD L+ + ED GLE + I +
Sbjct: 61 IESQRRLSEM-ENPDPSLLDEDQVRQDVLDALIQQKVMTLNAEDQGLELSDADIDSLITQ 119
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F D F+ D FVS + G+ E+ + K + ++ + Q
Sbjct: 120 MPQFQV-DGTFNRDRFVSAVRNMGMGVAEFRETMRKQYVVNQIRAGISQSGVVTDENVAQ 178
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
R + R+ L+ V + ++A + ++++ K+ ++ PE SYI+ +
Sbjct: 179 LLRIQNQTRNFRVTTLSADAVSDQVEVTDADVEAYYDENKEAFKLPESVDASYIVLSLAA 238
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF---QSLKKGKKFIQ 298
+ IEIS+++L+ YE+ + E R L+ + + + L G+ F
Sbjct: 239 LAETIEISDEQLRDYYEQRASELMREERRASHILIEDGENAEETMATIQERLAGGESFAA 298
Query: 299 LAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
LAEE G F++ + D + D++ ++G+ + + SFG + + +
Sbjct: 299 LAEEFSVDTVSAEQGGDLGFAERGVYDPAFEDAL-FALEEGEVSEPVSTSFGVHLIKLED 357
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
++ + E++ + ++ +A+E+ E L + ++ + + +
Sbjct: 358 VQKTEAPPLAELEDQLRRELAQREATERFAEVRSELADLAYAADNLAGPAEELGLEVREK 417
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ G D I + LF ++ + + + D + ++ E A+
Sbjct: 418 SGITRNGGDAPFDHAGLI----RQLFSEDVLNEGFNT-ELIDVGDNMSVVARVGEYQEAQ 472
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
+ LE+V +++ KT E ++ +A+ ++ + + GK+ ++G L
Sbjct: 473 QQPLEDVAEEIRAALTRQKTREALNERADAIIADL-ESGKDIEELG------LGEWQSYE 525
Query: 536 RMDNENKFFGYDGISQVFSG----PVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EK 587
N G +SQVFS V + +G + +V + G V E
Sbjct: 526 EQPRSNPALGGAVMSQVFSLQRPGDGGNVYGSVVSDGSASIVA-LDAVNEGEVNRDGGEF 584
Query: 588 DKFISYLTQMMNKDLLDSVIAYLK 611
+ +L + + + +L+
Sbjct: 585 RQLRGFLASLEGQREYQAYQQFLR 608
>gi|295676521|ref|YP_003605045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1002]
gi|295436364|gb|ADG15534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1002]
Length = 644
Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats.
Identities = 93/642 (14%), Positives = 219/642 (34%), Gaps = 37/642 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + + ++V+ G+ S+ V SV K+ + ++
Sbjct: 1 MLDFFRNHQR-LMMFMLILVILPGLGFVGIQGFRGFFDESANVASVNGHKITRVEYDDAM 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + +++LD ++ L + + L A V +
Sbjct: 60 RQQIDRGRQMLGAQFDMKAFDTPERRREMLDGMIEQRVLADETQRLHLTASDDAVRRALL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + LA +G+ +Y + L+ + S
Sbjct: 120 SDPVISSLKNPDGSIDLERYKQLLAMQGMTPDQYDERMRYNLAMQQLPASIAASAFTSKT 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + R V I + A P++A L +++ +++++ P I Y++
Sbjct: 180 LAQHLSELAQQQREVQGIAFHPHDYEAKIQPTDAQLQAYYDAHRNDFATPATAAIQYVVM 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ S+ +L+ Y+ N + + ++ K+A A ++ K K
Sbjct: 240 SPATLGASVQPSDADLKKYYDDNIAHFRTEGEVRASHILIAAPKDASTADKAKAKQKAEE 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + LG F + I D KK + +
Sbjct: 300 LLAQLKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFALKKDEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ FG+ I V+ +KP+ T SF EVK IA +++ AS+ ++ + +
Sbjct: 360 IVQTDFGFHIIKVTEVKPAVTKSFDEVKDQIAKEVKTQLASKAFTDNSEGFTSLVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + + I V + K + + + D
Sbjct: 420 SLQPAADKFKLPIQTATVTPQPDAKLPPDSPLNNPKFLAAVFANDSVSAHNNTQAIDVGD 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + PA + V V++ + E + E+ K
Sbjct: 480 NTLIAARVTDYKPAAVPAFDAVKDAVRQKVIAEQANEAAHKDGAAKLAEFEKS------- 532
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
A+ ++ + N+ + +S ++ + + + + Y +++V
Sbjct: 533 ----KATAGFSSPLKVSRNDAQGVPPAALSAIYKVDAQKLPAYVGVDLGDDGYAIYRVNR 588
Query: 579 SKVGPVQEKDKFI---SYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q+ + ++ + L+ + V
Sbjct: 589 IVPPAATDAQHLAVAQQQIAQVDAQSQAEAYLKALRERSKVQ 630
>gi|30250138|ref|NP_842208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
europaea ATCC 19718]
gi|30139245|emb|CAD86118.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
europaea ATCC 19718]
Length = 630
Score = 231 bits (587), Expect = 3e-58, Method: Composition-based stats.
Identities = 91/644 (14%), Positives = 251/644 (38%), Gaps = 47/644 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + + + V +I L++ +PF+ WG+ S + V +++ + +
Sbjct: 1 MFDFV--NKKKTVVQIVLLIAVLPFMFWGVESY-RSAGDAGYAAVVDGEEISRQEYEQAI 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + +G ++ + + +L+NL+ L + E +GL R+ EI
Sbjct: 58 RNQQENLRNMLGEKFDASLLDNPQMRLAVLENLIQERLLRREAERVGLTVLDSRLTAEIQ 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
FH +D KFS+ + L R+G++ + L R ++ G + +
Sbjct: 118 NISFFH-EDEKFSYQRYRDLLQRQGMSPAMFEARVAGELMRQQLLEGITGSVIVPRTVAG 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ ++ + ++ A+P A + +++ + ++ PE ++ Y++ +
Sbjct: 177 KVASLSATMYEINRMTISPEQYIDQAEPDEAAIQSYYDSHYQDFTLPERVKVEYVVLSLD 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----------- 289
E ++ +IS++E++ Y+++++++ E R ++ +A E ++
Sbjct: 237 ELARQEQISDEEIRKYYDEHQDEFGQAEERRASHILLSVPADATEEQKTSTKARAEQILE 296
Query: 290 ------LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
K + +L+E+ G + LG F++ + + ++G+ +
Sbjct: 297 QVRQDPEKLPELAAELSEDPGSAKEGGDLGFFARGLMVKP--FEDEVFQMQRGEIRGPVE 354
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMD 402
FG+ I ++ +K + +VK+ I ++ K +++ E + ++
Sbjct: 355 TPFGFHIIRLTEVKGADVAGLDDVKEQIRQLLQHQKVADRFGELSEDFSNIVYEQNDTLQ 414
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPD 460
+++ + +D ++ + E++L +F + ++ +
Sbjct: 415 PVAQMFNLSVQQSDWIDRNSREPS------VITNERMLQAIFSESAVRDHFNTESIEVAP 468
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+++ ++ E PA + + V + K +E+ ++ Q + +
Sbjct: 469 DTFVAARVVEHRPASAQSIGLVKDRIVALLKQQLASEQAENEGKQKLAGLQAGEVD---- 524
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF--PIENGLSYVVFKVTN 578
+++++ + K + + +F VE + + + + Y + ++
Sbjct: 525 ---ESLEWGESSEVSF--AQKKGDNEEILHALFQTDVEKLPAYTGVVTSKGGYDLIRINQ 579
Query: 579 SKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K + + L Q+ ++ L + IA L+ +Y VT+
Sbjct: 580 VKRPDIGNESSQYNLLFDQLQQIYGQEELSAYIAGLRQRYEVTI 623
>gi|307544940|ref|YP_003897419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
DSM 2581]
gi|307216964|emb|CBV42234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
DSM 2581]
Length = 607
Score = 231 bits (587), Expect = 3e-58, Method: Composition-based stats.
Identities = 111/633 (17%), Positives = 235/633 (37%), Gaps = 44/633 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD--ALFSVSGSSTVVSVGRQKVPFSSFIN 58
ML+ IR S +W AKI + + V ++G L + +V V + +P
Sbjct: 1 MLQSIRDRSASWGAKIIIGAVVVAMALFGAESLVGLLGGNDGDSVAKVNGESIPRQQLEL 60
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
++ + V E+ R L ++LD+L+S L Q+ E+ GL ++
Sbjct: 61 EVQRAIRS------GQVPPEQERE--LRSQMLDSLISERLLTQYAEEGGLHLSESQIDQL 112
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I P F +D KFS ++F +RL+ G + D + R +
Sbjct: 113 IVNLPEFQDQDGKFSRELFRNRLSSAGFTPLAFRDQLRADMKRRQLQQGLAVSEFSLESE 172
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
+ + RS + L + + + S L ++E + D+Y+ PE +++Y++ D
Sbjct: 173 ERRLAALQRQTRSFRHHALTVDDLESRPEASEQELQAYYEAHADDYQRPEQVKLAYVVLD 232
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-----EQLVFPNQKEADEAFQSLKKG 293
+ ++ ++S +L+ + + + ++ + +E Q L G
Sbjct: 233 REQMAEQADVSEQDLRDAWNAEAAEADRRVSHIMVRFGDQRTRQEAEARLEEVRQRLADG 292
Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
F LA E S LG S+ + + D +G + ++ G
Sbjct: 293 ASFADLAAEYSDDTSTSDEGGDLGVISRGFFGEA--FDEAAFSLGEGQVSDIVETDNGLH 350
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ V+ + SF+E + +A Q+ + S + +RL + + ++
Sbjct: 351 LIKVTEL---DRPSFEESRDRLARQVARKQVSTAFDDRAQRLIDESFAAEDLQSVAEELN 407
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ V V A P + F ++ + + L + M +++
Sbjct: 408 LERKTTDWVSRQNVSG----VLAEPGVMRQAFTPDVLEEGFN-SEVIELDEDRRMVLRVL 462
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ A LEEV + V + + KT E + ++A++L+
Sbjct: 463 DHREATTLPLEEVRSQVVEAVQAQKTREALENEADRLIEALRSGETPA--------IDWQ 514
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE---NGLSYVVFKVTNSKVGPVQE 586
T ++R D+ + + F P +G V+ + G V E
Sbjct: 515 RTEGLSRQDDTD--LAQPVVDAAFRLPHPEADETVYGRAIDGQRVVLIALDEVAEGQVDE 572
Query: 587 K-DKFISYLTQMM-NKDLLDSVIAYLKSQYSVT 617
+ + F++ + Q + ++ ++ ++ +L+ Q +
Sbjct: 573 QSEAFVARMAQQLRSQAAVNGLLGFLREQAEIK 605
>gi|322834042|ref|YP_004214069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602]
gi|321169243|gb|ADW74942.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rahnella sp. Y9602]
Length = 626
Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats.
Identities = 105/637 (16%), Positives = 243/637 (38%), Gaps = 23/637 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + F++ G+ + L SG V Q++ + +
Sbjct: 1 MMDNLRAAANHVVLKIILALIILSFILTGVGNYLIGGSG-DYAAKVNGQEIGRAQLEQAV 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + Q++G ++ L ++ L NL+ LDQ+ + +G+ ++
Sbjct: 60 QNQRSRLQQQLGDQFSALAGSDGYMQQLRQESLSNLIDVTLLDQYSKKLGITVSDQQIKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D +F + ++ + G + + L + + +
Sbjct: 120 AIFATPQFQT-DGRFDNAKYLQSIQGMGYTADNFAQLMKQQLISQQLEQAYGQSDFVLPV 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++R V L+ + A ++A L ++++ K+++ +PE ++SYI
Sbjct: 179 ESKSLGGLILQSRDVQTATLDTDALAAKQQVTDAELQAFYDQNKNSFLSPEQVKVSYIEM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + K +++ ++ A Y+++K ++ PE R +V +Q +AD LKKG F
Sbjct: 239 DAAAMQGKTNVTDADISAYYDQHKSEFGQPERRRYSVIVLKSQADADAVAAELKKGTDFA 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+LA+ + G P+ +L + +L KG + VI G+ I + ++
Sbjct: 299 ELAKTKSTDALSARQGGDLGWMEPETTLPEFKNANLTTKGQVSGVIKSDSGFFILRLDDV 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
P +V+ IA++++ K+ + +++ E + ++ E +
Sbjct: 359 TPEQVKPLADVRNTIADKLKQEKSLDAYYALQQKVSEAATN--DNESLASAEDVAGTKAV 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
D+ ++ + P + + + P S + + V++
Sbjct: 417 HTDWFTQNQIPAGINFKPVVQAIFDGGLIGQDGSPGSNSDIITVDGDRAFVVRVDAHKAE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ +V V K K ++ + +L+ + D K G + ++
Sbjct: 477 GVKPFADVKDQVTTLVKRQKAQDQARMEGEKLLTALKEGKG--DDAMKAAGLTFGAVQKV 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
R V++ P V ++ + V+ K+ G P +
Sbjct: 535 QRSQQ-----PSAFEENVYALPHPQKDQPVYGLTQDDKGNSVLVKLNAVTPGTIPAADTA 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+F + Q + DS++ L+ + + +
Sbjct: 590 RFNQEMQQTSSNVAFDSLLTNLRQEAKIKYGSAAQNQ 626
>gi|149913756|ref|ZP_01902288.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
AzwK-3b]
gi|149812040|gb|EDM71871.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
AzwK-3b]
Length = 613
Score = 230 bits (585), Expect = 6e-58, Method: Composition-based stats.
Identities = 108/627 (17%), Positives = 237/627 (37%), Gaps = 31/627 (4%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
I + +L + +G ++ + TV VG ++ + + + + E+ + G
Sbjct: 10 FVWILMGLLIIGLAGFGATNLGGAFG---TVARVGTAEIRTNDYARALQNEIRAREAERG 66
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
++ ++AR +G+ ++L LV+ A+ D +G+ + +I P F G D F
Sbjct: 67 GAISFQQAREMGIPDQVLAQLVTTASFDHEATRLGVSIGDDNLRQQILGIPAFQGIDGNF 126
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ + L R G+ E E+ D + +R V + G+ + + + E R V
Sbjct: 127 DREAYAFTLDRIGLTEAEFEDDMREETARALVQSAVMAGVTVPDAYFETLLTYLGEERDV 186
Query: 193 DYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
+ VL + P+ L + + ++ PE KR++Y +E+
Sbjct: 187 TWAVLERADLDTGLPTPTEEDLRSYHQGNLPSFTTPETKRLTYAWLTPEMIIDTVEVEEQ 246
Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG-KKFIQLAEEQGKSLSDI 310
L+ YE+ +++ PE R VE+L F + A+ A + G F L ++G L D+
Sbjct: 247 SLRDAYEERIDEFNQPERRLVERLAFADTGTAETAIAGINDGSTDFETLVAQRGLDLVDV 306
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
LG ++E + + + A+ GD + G + ++ I + +F+E +
Sbjct: 307 DLGDVAREDLGTAA---EVVFAAQAGDVVGPVETDLGPALFRINAILSAQETAFEEAEPL 363
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + + +A + R+ + LA G ++++++ ++ +D+ +G
Sbjct: 364 LRDTLAADRARRVIDSRIDRIADLLAGGATIEDLAAE---TDMEQGQIDWHPGVTEGIGA 420
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
+ L DG +++ + + L+EV V W
Sbjct: 421 Y------DAFRQAAQAITEDDFPDVEQLGDGGIFAMRLDRVVDPEIQPLDEVRDAVLAGW 474
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+ T ++ KA LV + + G++F D+ G L + R + + I
Sbjct: 475 RQQATVAALTEKAEPLVADL-RNGRDFADL----GLDTLDAQNLTRQGFQPDT-PTEFIE 528
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD------KFISYLTQMMNKDLLD 604
VF + IE + ++ + ++ M +D
Sbjct: 529 TVFDMEQGGI--ALIEGTTRVFILRLDAVRPPSSDNEELARLRTALRDQSASSMAQDFYQ 586
Query: 605 SVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ ++++ + + I +
Sbjct: 587 LLATDIRTRAEIEIDQQAINAVHGTFQ 613
>gi|329850639|ref|ZP_08265484.1| rotamase family protein [Asticcacaulis biprosthecum C19]
gi|328840954|gb|EGF90525.1| rotamase family protein [Asticcacaulis biprosthecum C19]
Length = 645
Score = 230 bits (585), Expect = 6e-58, Method: Composition-based stats.
Identities = 111/637 (17%), Positives = 251/637 (39%), Gaps = 16/637 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+ I+R ++TW+ K ++++ F+ G + FS S S+ V+ G KV + F +
Sbjct: 1 MISILRDFTKTWIFKGLMILIAASFIGVGGASY-FSGSNSTDVIVAGNVKVTAAEFKANV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ G + +E+ + + ++L L +++ +G+ + E+A
Sbjct: 60 DSMKRYYETQ-GQTITNEQLIAENIPGRLLAQLTDRKATIAWLDRLGVRPSSKLILAEVA 118
Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ PLF +F D + +LA + +K + + ++ + G+ +
Sbjct: 119 KIPLFFNSVTGRFDMDTYRQQLASRDMTDKMFEADLREQIAEQQYISSAQAGLEAPRVFA 178
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
F ++R L+ ++V +P+ A + +++ + PE + S I F V
Sbjct: 179 ATDAAFGLQSRDASMFFLSPQNVTMPGEPTQADIETFYKANLQRFTLPESRAASVITFSV 238
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K + +S+++L+ YE + +PE+RT Q+ P+ A++ +LK G+ +
Sbjct: 239 VNYAKSVSVSDEDLRQLYESRRASLATPEVRTFVQVRAPDMAAANKVSAALKAGRSAEEA 298
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
A+ + SL + + G+ + + G+ G + + IK
Sbjct: 299 AKANKGEVISYSLRPQTA---VADDKIAEAAFKMQTGEISAPVQGTLGISVIKMGEIKIG 355
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
SF+ + + ++R +A+EK+ E + LA G D +RR + L +
Sbjct: 356 SAPSFESARAQLDEELRRQRATEKLNEATNAFADALAKGEEFDAAARRLNLTVAPLEPIT 415
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
G G + + +F + S + L +G Y +++ P+ L
Sbjct: 416 ADGMGRSGTNYSTYGALVKGIFDLPQ---VGSVSEVLPLGEGEYFALKLTGLQPSGAPPL 472
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
+V ++ W+ K AE ++++A++ + +K G+ + + A + + I
Sbjct: 473 AQVQAELAVLWRREKAAETINAEADKAMARLAK-GETLAAVAASYKAEVRSQKAITLQTA 531
Query: 540 ENKFFGYDGISQVFSGPVEMVKCF--PIENGLSYVVFKVTNSKVGPVQEKDKF----ISY 593
+ ++VFS P++ + + ++ G + + +
Sbjct: 532 QQMQMPQAVAARVFSSKAGETFVAEMPVQGVPAVAIGRLDAIHQGDATQANTMATMSKAQ 591
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
+Q + +D+ + + + R L E
Sbjct: 592 ASQALGQDMGTVIQKNARVAVKAKSNTEAAYRALGLE 628
>gi|260912811|ref|ZP_05919297.1| peptidyl-prolyl cis-trans isomerase D [Pasteurella dagmatis ATCC
43325]
gi|260633189|gb|EEX51354.1| peptidyl-prolyl cis-trans isomerase D [Pasteurella dagmatis ATCC
43325]
Length = 625
Score = 230 bits (585), Expect = 6e-58, Method: Composition-based stats.
Identities = 115/634 (18%), Positives = 253/634 (39%), Gaps = 23/634 (3%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + +WV+K+ L ++ V F++ G++ +F+ ++V V +++ +F
Sbjct: 1 MLIEKLHSITNSWVSKLVLGLIAVAFVLSGITGYVFTNV-DTSVAKVNGEEITQQAFHQR 59
Query: 60 WKQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++ E ++Q++G + + L + +L++LV+ L Q+ D+ L R+
Sbjct: 60 YESEFERLNQQLGSQFAAVAGSKGFVSNLRQSVLNSLVNQELLRQYANDLKLAVSDERIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
EI S LF D KF ++++ RL G+N Y + + L +
Sbjct: 120 QEIVTSELFQT-DGKFDNNLYQRRLQLNGMNADMYAAYVGEALRLDQLQSGLAESAFSVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
DQ +F+ R + + + A + + +++ K + PE ++ YI
Sbjct: 179 AQQDQLTELFFQTRKLRLAKFDLKDEIAQQQVTEEEIKAYYDANKSAFSVPELAKVQYIE 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ EK I++++ E+ Y+ NK Y S + + + +++A E + +L+ G F
Sbjct: 239 LTRADVEKNIQVTDVEIAQYYQDNKALYVSQGQQRISHIELATEQDAQEVYAALQDGANF 298
Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
LA ++ + + L S +P + + G F+ + Y I
Sbjct: 299 AGLASARSLDKISAANGGDLSWLSAGGLPKAFEDAAN--ALEVGKFSQPVKVDSHYHIIL 356
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V++ K + + VK IA+Q+R + + K++ E + +++ ++
Sbjct: 357 VTDRKSAEALPLSVVKTQIADQIRQNLVNNQYFSVEKQMAEKAFENP--ESLAKAAEVAG 414
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+++ DF + E+ + + + D + V++ ++
Sbjct: 415 LEIKETDFFSANDMPMELNYPNVVSAIFHSDIS--QGGVNSEPMNVGDQHSIVVRVLKNT 472
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
P R LEE D++ K K V + +++ ++ K G +
Sbjct: 473 PEGVRSLEEAKADIETLLKRQKAESAVLAAVSEIAKNLTQNPKQ----ELPKGVNFAKEE 528
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKF 590
N ++ + F + NG V+ ++ + G +++ F
Sbjct: 529 SWVFAQNSDQTLANAVFAMPFKAGETTYQAAKSGNGE-IVLIQLNAVEQGSLTEEQRKAF 587
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ Q +L +S+I L+SQ + V+D +
Sbjct: 588 DLQVEQTREFELQNSLIQALRSQAKIEVNDKFYE 621
>gi|33597580|ref|NP_885223.1| peptidyl-prolyl cis-trans isomerase D [Bordetella parapertussis
12822]
gi|33574008|emb|CAE38331.1| peptidyl-prolyl cis-trans isomerase D [Bordetella parapertussis]
Length = 671
Score = 230 bits (584), Expect = 7e-58, Method: Composition-based stats.
Identities = 101/659 (15%), Positives = 231/659 (35%), Gaps = 40/659 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M EIIR R W+ I L+++ F++ G+ ++ + +V Q V S F +
Sbjct: 21 MFEIIRTHRR-WMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 79
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ +L + Q++G + + + +++L+ L+ L D G G + IA
Sbjct: 80 RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 139
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P + +FS + + LA +G++ + + L+ V+ +
Sbjct: 140 AIPQVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 198
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R+V A S + W++ ++ R PE + Y++ D
Sbjct: 199 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 258
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-------------EADEAF 287
+ +++ ++++ + YE+NK ++ PE R V ++ + A
Sbjct: 259 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAA 318
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
Q+ F +LA + + + G + P + K + V+
Sbjct: 319 QAAADPAGFAELARKNSQDTGSAAQGG-DLGWAPLPAPLQQAAQALAKDQVSGVVDTPTA 377
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISR 406
+ I V++ +P EVK ++ +++R AS + + + + S+ +
Sbjct: 378 FHILKVTDFQPGSVKPLSEVKDEVVSEIRKQLASARFADMATDMTRLVYDQRDSLQPTAD 437
Query: 407 REKIVSIDLPLVDFAGKDVKGK---------EVAAIPYKEQLLFRVFGKDDPLS--KDHT 455
+ + + G + + A + ++ +F D
Sbjct: 438 KLGLKLRTAGGITRTGLLPAEQAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSGV 497
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
+ L + + V++ P+ LE+V ++ + A+ + K
Sbjct: 498 IELTPDTMLAVRVAAVEPSHIPPLEQVRASIEDRLLGERAAQAARQAGEAAL-------K 550
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-GLSYVVF 574
+ + ++R D +N + V + + G YVV
Sbjct: 551 SVQADASATPEGFAPAIVVSRQDAQN--LPRRVLDAVMRQAPSPLPAYTGVELGADYVVA 608
Query: 575 KVTNSKVGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
++ + G Q+ D + L+ + +V+ L+ QY V + + +
Sbjct: 609 RIEKVEAGQSTEQDLDLLKTQLSGAWGQAEDAAVLRQLRDQYKVQILPEAAEAIKGDAQ 667
>gi|332290245|ref|YP_004421097.1| peptidyl-prolyl cis-trans isomerase [Gallibacterium anatis UMN179]
gi|330433141|gb|AEC18200.1| peptidyl-prolyl cis-trans isomerase [Gallibacterium anatis UMN179]
Length = 621
Score = 230 bits (584), Expect = 7e-58, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 239/639 (37%), Gaps = 33/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +R + + V K+ + V+ + F++ G++ L S + + +V ++ F +
Sbjct: 1 MMEKLRGYTHSMVWKVLMSVIAISFVLSGVAGYLISRQNT-SAATVNGVEISQRLFQQQY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + ++ ++G + GL +LD L+ L Q+ +++GL +
Sbjct: 60 QSQYQQLAMQMGDKFAAVADSAEFTNGLRHSVLDRLIDDELLRQYSKELGLGVGDEAIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F KD +F + V+ LA + +Y + + L + ++G + +
Sbjct: 120 AIVMNPAFQ-KDGQFDNAVYQQLLANNNLTPDQYAEIVRQDLVLSQLMGSLLASDFLTEA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q + +F+ RSV + A S+ + +++ +K + PE ++ YI
Sbjct: 179 QQQQFVKLFFQKRSVRLATFPVADLAAKQTISDQEIEKYYNDHKAAFATPELVKVQYIDV 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + K +++S+ E+ Y+ NK ++ + + + Q EAD+ + L++G F
Sbjct: 239 NKDKLAKDLQVSDVEVAQYYQDNKSQFMGQAKQHIAHIQVNTQAEADDIYNKLQQGADFA 298
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+LA++ + L +P ++ G ++ Y I V
Sbjct: 299 ELAKKYSIDRLTAVNGGDLSWVVAGQLPKA--FEAAADNTAVGAYSKPTKVDDKYHIIKV 356
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ + +EVK I + +R A K K + + S + +E ++
Sbjct: 357 LARNEATVLPLEEVKSRITDLVRQDLAERKYFSVEKVVADKAFEDQSGLATAAKEG--NL 414
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ + +D + ++ +++ + + ++ +
Sbjct: 415 TVEETGYFARDDVPAALNFSNVISEMFS--PELVQGGMNSQMISVGENHSVIFRVVDYKA 472
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
A + L E T + + K + LV + + + +NL +
Sbjct: 473 AGTKPLAEAKTQITALLQREKAENIELDRVKALVAKLQAGDNSAVEFKQNLTTVYAESKN 532
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKC----FPIENGLSYVVFKVTNSKVG--PVQEK 587
Q+F+ P+ ++ V + + G +++
Sbjct: 533 ------------PALDKQIFAMPLPTAGKPSYHVGVDQNGDIVAIALDKVEDGQLSAEQQ 580
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
F+S L Q DL +++ L+ + + ++ ++ +
Sbjct: 581 KAFVSQLMQFRVNDLQATLLKALREKAKIEINQEMLDQL 619
>gi|270263574|ref|ZP_06191843.1| putative protease maturation protein [Serratia odorifera 4Rx13]
gi|270042458|gb|EFA15553.1| putative protease maturation protein [Serratia odorifera 4Rx13]
Length = 627
Score = 230 bits (584), Expect = 8e-58, Method: Composition-based stats.
Identities = 114/637 (17%), Positives = 254/637 (39%), Gaps = 24/637 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + FL+ G+ S V Q + + ++
Sbjct: 1 MMDNLRAAANHVVLKIILGLIILSFLLTGVVSY--QGSAGDYAAKVNGQVIERAQLEQAF 58
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G ++ + + L L+ LDQ+ + +GL +V
Sbjct: 59 QSERSRMQQQLGDQFSALAGNEGYMQQMRHQALSQLIDNMLLDQYAKKLGLSVSDDQVKD 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F + +F + ++ ++R G + + L V+ F
Sbjct: 119 AIRKAPYFQT-NGQFDNAKYLDLISRMGYTADNFAQSMRQQLVNQQVIQAFGQSGFVLPS 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R+V L+ + + A ++ L ++ + K+++ APE ++SYI
Sbjct: 178 ESQGMAALVLQERNVRLATLDLKALQAKQTVTDDELKDYYSQNKNSFIAPEQVKVSYIPL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + K+ +++ ++ A Y+++K Y PE + + + EA+ LKKG F
Sbjct: 238 DAASMQDKVTVADADISAYYDQHKSSYGQPERKNYSVIQLKTEAEANAVLDELKKGGDFA 297
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA+E+ + G P+ + + +L +KG + V+ S GY++ +++I
Sbjct: 298 TLAKEKSTDIISRRTGGELGWLEPETTADELKQANLTEKGQLSGVVKSSVGYLVVRLNDI 357
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
P EV+ DIA Q++ KA + +++ E + + ++ E+ +
Sbjct: 358 APEKVKPLSEVRDDIAKQVKQEKAVDAYYALQQKVSEA--ATSDNESLASAEEAAGVKAA 415
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
++ +D + P + + + P S + + +++ P
Sbjct: 416 QTEWFTRDNVPAALNFKPVIQSIFDGSLIGEGGSPGSNSDVITVDGDRAFVIRVSGHKPE 475
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V V + K K +E + +L++E + + K G S + ++
Sbjct: 476 GIEPFDQVKDRVAELVKRNKAEQEAKLQGEKLLVELKQGKG--DEAMKAAGLSFGSVQKM 533
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
R +++ + VF+ P V + + V+ + G P +E
Sbjct: 534 ARAPEDSQ-----LVQSVFALPHPQEGKPVYGMSQDRQDNVVLIALDAVNPGTLPAEEMK 588
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
F+ + + DS++A L+ + + + Q+
Sbjct: 589 TFVGKMEEGATGVSFDSLLASLRKEAKIKMGAAEQQQ 625
>gi|167581584|ref|ZP_02374458.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
thailandensis TXDOH]
Length = 644
Score = 230 bits (584), Expect = 8e-58, Method: Composition-based stats.
Identities = 91/643 (14%), Positives = 221/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + L+++ I G+ S+ V +V K+ + F
Sbjct: 1 MLDFFRNHQR-LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGML 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G +++ + +++LD L+ L + + L A G V +
Sbjct: 60 RQQVDQARQMLGAQFDAKAFDTPQRRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D F + + LA +G+ +Y + L+ + V
Sbjct: 120 SDPVVASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V ++L + P++A ++ +++ +K + E I Y+++
Sbjct: 180 VARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S+ +++ Y+ N +Y + V + K+A A ++ K K
Sbjct: 240 SQAAAAAAAQPSDIDVKKYYDDNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ + D KKG+ +
Sbjct: 300 LLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKGEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G FG+ I +++KP+ EVK I ++ A++ ++ + +
Sbjct: 360 VVQGDFGFHILKATDLKPAVVKPLAEVKDSIVADLKQQFAAKAFADNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V + K + + + +
Sbjct: 420 SLQPAADKYTLTIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADAVKNGNNTQAIDVGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ P+ L+ + V+ + A + E K
Sbjct: 480 NTLIAARVTSYQPSTVPALDAIKDQVRAKVVADEAARLAKQDGEAKLAELRKSKSTAGFA 539
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
++I+R + +S ++ + + + + Y +F+V +
Sbjct: 540 A---------ADKISRT--QAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNS 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + L Q+ + ++ +A L+++ V +
Sbjct: 589 VVAAAPADDQRLAAAQQQLAQVYAQSETEAYLASLRARSKVKL 631
>gi|33601983|ref|NP_889543.1| peptidyl-prolyl cis-trans isomerase D [Bordetella bronchiseptica
RB50]
gi|33576421|emb|CAE33499.1| peptidyl-prolyl cis-trans isomerase D [Bordetella bronchiseptica
RB50]
Length = 671
Score = 230 bits (584), Expect = 8e-58, Method: Composition-based stats.
Identities = 101/659 (15%), Positives = 231/659 (35%), Gaps = 40/659 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M EIIR R W+ I L+++ F++ G+ ++ + +V Q V S F +
Sbjct: 21 MFEIIRTHRR-WMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 79
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ +L + Q++G + + + +++L+ L+ L D G G + IA
Sbjct: 80 RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 139
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P + +FS + + LA +G++ + + L+ V+ +
Sbjct: 140 AIPQVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 198
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R+V A S + W++ ++ R PE + Y++ D
Sbjct: 199 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 258
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-------------EADEAF 287
+ +++ ++++ + YE+NK ++ PE R V ++ + A
Sbjct: 259 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAA 318
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
Q+ F +LA + + + G + P + K + V+
Sbjct: 319 QAAADPAGFAELARKNSQDTGSAAQGG-DLGWAPLPAPLQQAAQALAKDQVSGVVDTPTA 377
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISR 406
+ I V++ +P EVK ++ +++R AS + + + + S+ +
Sbjct: 378 FHILKVTDFQPGSVKPLAEVKDEVVSEIRKQLASARFADMATDMTRLVYDQRDSLQPTAD 437
Query: 407 REKIVSIDLPLVDFAGKDVKGK---------EVAAIPYKEQLLFRVFGKDDPLS--KDHT 455
+ + + G + + A + ++ +F D
Sbjct: 438 KLGLKLRTAGGITRTGLLPAEQAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSGV 497
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
+ L + + V++ P+ LE+V ++ + A+ + K
Sbjct: 498 IELTPDTMLAVRVAAVEPSHIPPLEQVRASIEDRLLGERAAQAARQAGEAAL-------K 550
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-GLSYVVF 574
+ + ++R D +N + V + + G YVV
Sbjct: 551 SVQADASATPEGFAPAIVVSRQDAQN--LPRRVLDAVMRQAPSPLPAYTGVELGADYVVA 608
Query: 575 KVTNSKVGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
++ + G Q+ D + L+ + +V+ L+ QY V + + +
Sbjct: 609 RIEKVEAGQSTEQDLDLLKTQLSGAWGQAEDAAVLRQLRDQYKVQILPEAAEAIKGDAQ 667
>gi|308270798|emb|CBX27408.1| hypothetical protein N47_H22300 [uncultured Desulfobacterium sp.]
Length = 632
Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats.
Identities = 111/639 (17%), Positives = 245/639 (38%), Gaps = 34/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RK + +W+ K L ++ V F + ++ V V + + + ++
Sbjct: 1 MLDFMRKNAGSWMIKAILGIIVVV--FVFWGVGSFRSNRANRVAKVNGEVITVREYQEAY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ I K+G N E ++ KK LD+L+ L Q + + + I
Sbjct: 59 NNLVEQIRAKLGTNYNEETLKAFNFKKKALDDLIVKKLLVQEAKKLKFRVTDDELVKLIG 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F D F+ + L+R E+ + L ++ ++ S+
Sbjct: 119 SIKAFQV-DGVFNKKEYERVLSRNHTVPDEFEATVRESLIMERLISFITSSVKVSDNEAL 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + + +VDY+ +PS L ++F+K K++YR + +++Y+LF
Sbjct: 178 EWFNWKGASVNVDYVFFTP-DKYNGINPSQKELNEYFDKNKESYRTEKKVKVAYLLFSPD 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADEAFQ 288
++++ ++E++ YE N +K+ +PE ++ + +AD F+
Sbjct: 237 SFITQVKVDDNEVKEYYENNIDKFTNPETVEASHILCKIDEGANPAAVQAAKQKADNVFK 296
Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
+K+G+ F +LA++ S LG+F K+ + + + + K+G+ + +
Sbjct: 297 MIKEGQPFEELAKKYSDCPSKADGGHLGAFGKKDMVEPFASKAFSM--KQGEISEPVLTK 354
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ I V + + +E + +I ++ KA + ++ +++ + M+++
Sbjct: 355 FGWHIIKVEKVNKEKMLVLKEAESEIRKKLISEKAKKLAYDEAEKICDLAIN---MNDLI 411
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + + DF K AA Q L + + V Y
Sbjct: 412 KASEKSGVKIKTTDFFSKK---DASAAAGADNQALMEAGVFEMSDKEISDVKEIGNRYCV 468
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++ + + + L++V VK D E+ A L+ K GK+F G
Sbjct: 469 AEVTDIMLPKIPVLKDVAETVKSDVIKEMQWEKAKKDAEVLLSAL-KTGKDFTQESLKYG 527
Query: 526 ASLLTTNQINRMDNENK-FFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ T R + F P++ Y + + + P
Sbjct: 528 LTPHETGFFARSGPVGSIGYEPQLSEAAFKLSDDNKYAETPVKGKNGYYIMRFKERENPP 587
Query: 584 V----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+EK++ + L + ++ S + +KS + +
Sbjct: 588 EQDFDKEKERIVKALLEQKKENTFSSWLEKIKSSSEIII 626
>gi|153827658|ref|ZP_01980325.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MZO-2]
gi|149737864|gb|EDM52769.1| peptidyl-prolyl cis-trans isomerse D [Vibrio cholerae MZO-2]
Length = 592
Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats.
Identities = 114/606 (18%), Positives = 237/606 (39%), Gaps = 24/606 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ + A K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRVSDEQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + F + + L R G + Y ++ K L R ++ G +
Sbjct: 120 LILEIPQFQSQG-VFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLMSALQGSEFSLSG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + I L+ S+ + Q+++ + + E ++SY+
Sbjct: 179 EVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKTNTERFTRSEQVKVSYVEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++ + + Q Y+++ +KY + E R V ++ E L G
Sbjct: 239 SADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHILIEGNDEQKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + SLG + + D + + F+L +KG + ++ FGY I
Sbjct: 299 FATLAKEKSQDLGSAAEGGSLGWIEPDTM-DPAFEAAAFALTEKGQVSGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +IK + EV++ I ++ +A + LE+ + + + K +
Sbjct: 358 RLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAKQSELEKMAFEHSDSLDEA--AKAI 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S + DF + + + IP Q L K+D L+ + + + V+++E
Sbjct: 416 SATVVHTDFISAEQAPEVLT-IPAVLQALKSPEVKEDGLN-SEVIEVAPEHVVVVRVEEF 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P L+EV + V + +K ++ NQLV K G+ D+ G S
Sbjct: 474 RPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTAL-KAGET--DLLAQKGVSFGEL 530
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKF 590
I+R Q E V + + VV +++ + ++
Sbjct: 531 QMIDRSSPLANTVYAMVKPQ----EGEKVYAQAKDFDGNIVVIELSKVESKLTPAYHEQI 586
Query: 591 ISYLTQ 596
+ L +
Sbjct: 587 ATQLER 592
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/481 (10%), Positives = 137/481 (28%), Gaps = 24/481 (4%)
Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
I+ ++ Y +R ++ + R +R V+ ++L
Sbjct: 47 NAEISRGDFEQAYQNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAA 106
Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
S+ + Q + + +Y + +
Sbjct: 107 SLGLRVSDEQVRQLILEIPQFQSQGVFDSAAYQATLRRAGFTPEMYAEYLRKDLVRNQLM 166
Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
++ V + + A++ S +I +
Sbjct: 167 SALQGSEFSLSGEVNLQDQLISQTRDIRTITLSLEDFAKKVTLSDEEIEQYYKT------ 220
Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
F+ +++ + V + G + + + + K + R
Sbjct: 221 ---NTERFTRSEQVKVSYVELSADGLKAQVSVDDAAAQQYYQEHLDKYSTAEQRNVSHIL 277
Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
D ++ + L + + + K S DL G + P E F
Sbjct: 278 IEGNDEQKAQAILDELNAGADFATLAKEKSQDLGSAAEGGSLGWIEPDTMDPAFEAAAFA 337
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + D Y +++ + + EV +K++ + + +K
Sbjct: 338 LTE----KGQVSGLVKSDFGYHIIRLDDIKAPVVKPYSEVEQAIKQELIDQQALDSFYAK 393
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-------G 555
++L + + + K + A+++ T+ I+ + + S
Sbjct: 394 QSELEKMAFEHSDSLDEAAKAISATVVHTDFISAEQAPEVLTIPAVLQALKSPEVKEDGL 453
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLK 611
E+++ P + V + + + K + + L++M + L + ++ LK
Sbjct: 454 NSEVIEVAPEHVVVVRVEEFRPETVLPLDEVKSQVVEQLSRMKGEQQALELGNQLVTALK 513
Query: 612 S 612
+
Sbjct: 514 A 514
>gi|21230443|ref|NP_636360.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|21112006|gb|AAM40284.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 656
Score = 229 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 108/672 (16%), Positives = 226/672 (33%), Gaps = 65/672 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA P F D KFS D + + LA+ ++
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ E R V+ +L A S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLTLMGETRDVELAMLPEPTADT-APVSDAQIKQWYD 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + L+ YE+ K ++ P+ R ++
Sbjct: 238 GHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297
Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+ A A ++ + G F LA+ + L K +
Sbjct: 298 AGSDAAAQKAAEEKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLSWVEKGTMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K GD I FGY + + +K SF++V+ +A + A +
Sbjct: 358 --FEDALFAMKAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L I +L
Sbjct: 416 FADLSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRTDASG-------IAANPAVLRS 468
Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
F + + + + + +++ + L++V V +T +
Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQTLPLDKVREKVIAAVHADRTKKSAV 528
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+ A+ L+ K G+ + + + + R +FS P
Sbjct: 529 AAADALLARVQK-GETLQSLAAAEKLQVTPIPGLPRTAPVPT---PAANRAIFSAPRPTE 584
Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
+ G Y VF V+ S G P +++ L+Q+ + + + ++
Sbjct: 585 GKPSVGKVELTGGRYAVFVVSKSTPGDLKQMPAEQQTMLREQLSQIDGGNAAQAYVKEMR 644
Query: 612 SQYSVTVHDNLI 623
+Y + + + +
Sbjct: 645 KRYKIQIEEAQL 656
>gi|167619701|ref|ZP_02388332.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
thailandensis Bt4]
gi|257138861|ref|ZP_05587123.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
thailandensis E264]
Length = 644
Score = 229 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 91/643 (14%), Positives = 221/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + L+++ I G+ S+ V +V K+ + F
Sbjct: 1 MLDFFRNHQR-LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGML 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G +++ + +++LD L+ L + + L A G V +
Sbjct: 60 RQQVDQARQMLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D F + + LA +G+ +Y + L+ + V
Sbjct: 120 SDPVVASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V ++L + P++A ++ +++ +K + E I Y+++
Sbjct: 180 VARRLTELAEQQREVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S+ +++ Y+ N +Y + V + K+A A ++ K K
Sbjct: 240 SQAAAAAAAQPSDIDVKKYYDGNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ + D KKG+ +
Sbjct: 300 LLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKGEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G FG+ I +++KP+ EVK I ++ A++ ++ + +
Sbjct: 360 VVQGDFGFHILKATDLKPAVVKPLAEVKDSIVADLKQQFAAKAFADNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V + K + + + +
Sbjct: 420 SLQPAADKYTLTIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADAVKNGNNTQAIDVGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ P+ L+ + V+ + A + E K
Sbjct: 480 NTLIAARVTSYQPSTVPALDAIKDQVRAKVVADEAARLAKQDGEAKLAELRKSKSTAGFA 539
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
++I+R + +S ++ + + + + Y +F+V +
Sbjct: 540 A---------ADKISRT--QAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNS 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + L Q+ + ++ +A L+++ V +
Sbjct: 589 VVAAAPADDQRLAAAQQQLAQVYAQSETEAYLASLRARSKVKL 631
>gi|254418312|ref|ZP_05032036.1| hypothetical protein BBAL3_622 [Brevundimonas sp. BAL3]
gi|196184489|gb|EDX79465.1| hypothetical protein BBAL3_622 [Brevundimonas sp. BAL3]
Length = 635
Score = 229 bits (582), Expect = 1e-57, Method: Composition-based stats.
Identities = 105/635 (16%), Positives = 230/635 (36%), Gaps = 20/635 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+ R SR+ A LV++ + F+I G +F+ G V+ G + + + F ++
Sbjct: 1 MITAFRAFSRSKWAAALLVLIAISFVIVGARMDVFANLGPKHVIDAGDRSMNEAEFSAAF 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ I Q+ G V +E + + + LD+ + G+ + +I
Sbjct: 61 GRVRENIQQQAGRPVTNEDLIAENIHTRFLDSQTEQFGFLNWAWKAGIRPGKELIVKQIR 120
Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ P F +F + S LA++ + + G R +
Sbjct: 121 QIPAFFNSVTGQFDQQAYESALAQQNLTPAMLEQDLRDQYATEHFGAAIFAGARAPRIYG 180
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
FE R + + I P++A L + ++ RAPE+ R+ ++
Sbjct: 181 ALLAGAAFETRDGRWFEVTPAMAGEIPAPTDAQLNAFIQENAARLRAPEF-RMVSVVLFT 239
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ +S++ ++ +E K+ PE RT L P++ A + +L+ G+ +
Sbjct: 240 PDPGAAPVVSDERIRERFEFKKDSLGKPETRTFVTLTAPSRDVAQKIAAALRAGQSPADV 299
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + + + + + + + G+ +A V+ I+P
Sbjct: 300 GRANSIQPASF---NVTPRAAVGDAATAAAVFGLQVNQVSDPVQAGVGFAVAKVTAIQPG 356
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + ++ I ++R + ++ E G ++ + +R IDLP
Sbjct: 357 QPATLENSREQIVAELRAEDVKGQTYAKVEKYEAARTAGKNLADAAREAGGRVIDLPPFT 416
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
GK G+ + A P +F + + G Y V++ + P+ L
Sbjct: 417 KDGKLPNGQALNAPPQ----VFETAWSLTKGGESDVIDAGQGQYFAVRVNDIRPSALPTL 472
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
EV + W + + +++KA +L ++G++ + +++ A L + R
Sbjct: 473 AEVRAPLAAQWTQREISRRLAAKAEEL-ASRVRQGQDIAAVARSVNAPLTVRTGVVRDQA 531
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
+ G + +F V P E G Y+V +V +
Sbjct: 532 TQESLGQGVLQGLFGQAKGQVFSQPGEGG--YLVGRVDGVHAANPAVAGPLAEQARPRIT 589
Query: 600 KDLLDSVIA------YLKSQYSVTVHDNLIQRYLD 628
++L+ +++ +S+ V L ++ L
Sbjct: 590 QELVQAMVQTEMTAGAQRSKAKNDV--ALARQALG 622
>gi|302344093|ref|YP_003808622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
baarsii DSM 2075]
gi|301640706|gb|ADK86028.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
baarsii DSM 2075]
Length = 649
Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats.
Identities = 107/637 (16%), Positives = 231/637 (36%), Gaps = 38/637 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE++R+ + W+ KI L ++ + F + + S + V Q + + +
Sbjct: 1 MLELMRRQAGNWIIKIILGLIALAFALS-FGLSPNFGSNPGVAMKVNDQPIMEDAVSELY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ Q+ G + + A + L ++ L +L+ L Q + +GL + + I
Sbjct: 60 GRMTEQARQQFGDNFD-KLAPMLNLRQQALYSLMDRLLLAQAAQRMGLGVSNRELASSIQ 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F + KF ++ RLA + E+ + + L + + M G + + L +D
Sbjct: 119 DMAAFQVEG-KFDMRLYQQRLAANRLTEERFENSVRADLLQGKIAAMVGGSGQVTPLQVD 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
QA + Y+++ + + + +E +K Y P R+ Y+ V
Sbjct: 178 QALQEALSRADAVYLLVKPEDLLDSVKVGEDEIAEHYESHKGLYMNPATLRVDYVALPVS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------AFQ 288
K +++ DE+ YE + +Y PE ++ EADE +
Sbjct: 238 AFRDKADVAEDEIIDAYEMDWRQYSRPEEVRARHILIELAPEADEAQKAKAKAQALALLE 297
Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
+ G+ F ++A+E + LG F + + D + G V+
Sbjct: 298 KARAGEDFAKMAKEYSKGPSADKGGDLGYFQRGQMVGP--FDELVFKMTPGQI-EVVETE 354
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + + K + V +E + +I ++ +A + + + L + LA G ++ +
Sbjct: 355 FGWHVVKLEDKKKARIVPLEEARGEIKARLAEQQAKDLAMQAAEGLFDALAAGQPLEAAA 414
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ K+V P V + + Q L + DG +
Sbjct: 415 KERKLVVEQPPAVTADQPVPGLTGLKDLFAAAQGLEA--------GQPLRPMTFDGGAVV 466
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
I++ + + L++V V+ ++ K + +A +++ + + + K G
Sbjct: 467 AVIRQRTAPQPKPLDKVREQVEMAVRSEKANQLAQVQAKEIIAKLNAAKDPAAALSKLGG 526
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQV--FSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
T + + G + + Q + V P+ + V VT +
Sbjct: 527 ---KPTGPLTSSEPIEGLPGSEQLQQAIHALAQDKTVLAQPVPVAGGFAVAVVTKRQPPE 583
Query: 584 VQEKDKFI----SYLTQMMNKDLLDSVIAYLKSQYSV 616
D+ L + M +A L++ +
Sbjct: 584 PGAMDQMREGMTQQLRRTMQNQTYQRFLADLRNNADI 620
>gi|71278179|ref|YP_270447.1| peptidyl-prolyl cis-trans isomerase D [Colwellia psychrerythraea
34H]
gi|71143919|gb|AAZ24392.1| peptidyl-prolyl cis-trans isomerase D [Colwellia psychrerythraea
34H]
Length = 638
Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats.
Identities = 97/642 (15%), Positives = 238/642 (37%), Gaps = 34/642 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ AKI L ++ + F + G+ SV ++V +V + + +F ++
Sbjct: 1 MLEDIREKSQGLTAKIILGLIILTFAVAGVGSYTNSV--DTSVATVNGEPISQQAFNKAY 58
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + G ++Q+ G + + ++ + +LDNL++ +DQ E + + R+
Sbjct: 59 QAQRGRMAQQFGEMFDTLSNDANYMANFRQGVLDNLINEKLIDQNSEALAIRVSDLRLKE 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINE-KEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I + P F D F ++ +++ + + G + ++ D+ ++R + +
Sbjct: 119 TIRKMPEFQV-DGTFDNNRYLAIINQAGFFQSSDFRDYLRVEMTRRQLSQALIATEFNLP 177
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ R + + ++ A + ++ + ++ + ++ E ++ YI
Sbjct: 178 YQEKLQLALQNQTRDIRFATISAEQFKATVELTDEEVNSYYLANQARFQNKEQVKVDYIS 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK----------EADEA 286
+V K I ++++E+ Y++N + R + ++ +A
Sbjct: 238 LNVANIAKGINVTDEEVAKYYQENSASFTESAQRRISHILIEFNDGNADDEAAKIQAQAV 297
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
L++G+ F LA+E G + + + + + ++ +L GD + ++
Sbjct: 298 LARLEQGEDFAVLAKEVSNDTFSGENGGDLEWLEPGVMEETFDEAALALVNVGDTSQLVK 357
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMD 402
SFGY + +++ K + +V+ ++ +++ +A EK + + S++
Sbjct: 358 TSFGYHVLKLTDYKEEVVKALIDVQTELRSKLSNDQAQEKFFTLQQEMARISFEFPDSLE 417
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + + P + G + A+ + + + D
Sbjct: 418 DAAAEVNVTIQTSPWLLRGGNSAPFDQAKAVEAAFSDIVLQDNM-----NSDLIEVNDDV 472
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ +++ A + L EV +K K E+ + L+ ++ G +
Sbjct: 473 ALVLRLNTFQEANVKPLSEVEAQIKDIIVNQKATEKAQQTVDSLLADF-NAGTDISTQLT 531
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTN 578
L S ++ ++ R E F P + + +VT
Sbjct: 532 ALNTSFVSKEKVARYSPE---IDQSISRAAFVLPHPVSGVISASTVALSNGDLALIEVTA 588
Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
V V T + + S + LK +T
Sbjct: 589 VDVNDVAATPNLAQQQTSQLAQSAYQSFVNSLKVGAKITRKQ 630
>gi|300715595|ref|YP_003740398.1| peptidyl-prolyl cis-trans isomerase D [Erwinia billingiae Eb661]
gi|299061431|emb|CAX58543.1| Peptidyl-prolyl cis-trans isomerase D [Erwinia billingiae Eb661]
Length = 623
Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 108/637 (16%), Positives = 246/637 (38%), Gaps = 26/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R AS V KI L ++ + F++ G+ + L +G V Q++ + N++
Sbjct: 1 MMDNLRAASNHVVLKIILALIILSFVLTGVGNYLIGGNG-DYAAKVNGQEISRAQLENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E Q++G + A + ++ L LV + L + +D+GL ++
Sbjct: 60 SNERSRQQQQLGEQFSQLAGNPAYIQQIRQQALSQLVDESLLTGYAKDLGLAISDDQIKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I F + KF + ++ + + G +Y + K L+ ++
Sbjct: 120 AIFNQSAFQT-NGKFDNTKYLGLINQMGFTADQYAEALRKQLTTQQLIAAVTNTDFMLTG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D + R V +N + A S + ++E+ K+N+ +PE R+SYI
Sbjct: 179 ETDALAALVSQERLVREATINVAALAAKQTVSAEEIKNYYEQNKNNFMSPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ S ++Q+ Y++++ Y P+ + + EA A ++KKG F
Sbjct: 239 DAASMQE--TASEADIQSWYDQHQADYTQPQRSRYSIIQTKTEAEAQSALDAMKKGGDFA 296
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA+E+ G PD + + L +KG + VI S G+++A ++++
Sbjct: 297 ALAKEKSADPISARNGGDMGWLEPDTTPDELKSAGLKEKGQLSGVIKSSVGFIVARLTDV 356
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P V DIA +++ KA + + +++ + + ++ E+ +
Sbjct: 357 QPQQIKPLAAVHDDIAAKVKQEKAIDAYYKLQQKVSDAATN--DNESLAGAEQAAGVKAV 414
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ D E+ ++ + V P S + + +++ E P
Sbjct: 415 ETGWFSHDNPPAELNFKQVEQAIFNGGLVGENGAPGSNSDIITVDGDRAFVLRVSEHKPE 474
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ L++V + KT K + ++A++L+ + + K S + +
Sbjct: 475 AVKPLDQVTAQITDTLKTQKAQAQAKAQADKLLADLKAGKG--DEAMKAANLSFGSQKTL 532
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
R + F+ + + + ++ + + G P +K
Sbjct: 533 TRNGQD------AVTQAAFTMSLPAKDKPSYATSEDGEGNVLLVALDQVRSGSMPDAQKK 586
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +TQ + +++++ L+ + + +
Sbjct: 587 AMVQGITQNNAQITFEAMLSNLRKEAKIKYGAAAQAQ 623
>gi|33592803|ref|NP_880447.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama
I]
gi|33572451|emb|CAE42019.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis Tohama
I]
gi|332382216|gb|AEE67063.1| peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis CS]
Length = 651
Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 101/659 (15%), Positives = 229/659 (34%), Gaps = 40/659 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M EIIR R W+ I L+++ F++ G+ ++ + +V Q V S F +
Sbjct: 1 MFEIIRTHRR-WMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAH 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ +L + Q++G + + + +++L+ L+ L D G G + IA
Sbjct: 60 RNQLEQLRQRLGSQFDPAMIDTPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P + +FS + + LA +G++ + + L+ V+ +
Sbjct: 120 AIPQVQD-NGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVARVLDPISQSASVPAEVAR 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R+V A S + W++ ++ R PE + Y++ D
Sbjct: 179 SVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEA 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-------------EADEAF 287
+ +++ ++++ + YE+NK ++ PE R V ++ + A
Sbjct: 239 AATEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAA 298
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
Q+ F +LA + + G + P + K + V+
Sbjct: 299 QAAADPAGFAELARKNSQDTGSAGQGG-DLGWAPLPAPLQQAAQALAKDQVSGVVDTPTA 357
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISR 406
+ I V++ +P EVK ++ ++R AS + + + + S+ +
Sbjct: 358 FHILKVTDFQPGSVKPLAEVKDEVVGEIRKQLASARFADMATDMTRLVYDQRDSLQPTAD 417
Query: 407 REKIVSIDLPLVDFAGKDVKGK---------EVAAIPYKEQLLFRVFGKDDPLS--KDHT 455
+ + + G + + A + ++ +F D
Sbjct: 418 KLGLKLRTAGGITRTGLLPAEQAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSGV 477
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
+ L + + V++ P+ LE+V ++ + A+ + K
Sbjct: 478 IELTPDTMLAVRVAAVEPSHIPPLEQVRASIEDRLFGERAAQAARQAGEAAL-------K 530
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-GLSYVVF 574
+ + ++R D +N + V + + G YVV
Sbjct: 531 SVQADASATPEGFAPAIVVSRQDAQN--LPRRVLDAVMRQAPSPLPAYTGVELGADYVVA 588
Query: 575 KVTNSKVGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
++ + G Q+ D + L+ + +V+ L+ QY V + + +
Sbjct: 589 RIEKVEAGQSTEQDLDLLKTQLSGAWGQAEDAAVLRQLRDQYKVQILPEAAEAIKGDAQ 647
>gi|188992771|ref|YP_001904781.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris
str. B100]
gi|167734531|emb|CAP52741.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris]
Length = 656
Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats.
Identities = 108/672 (16%), Positives = 223/672 (33%), Gaps = 65/672 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRARFEQSRMQERQRQGENFDPRQFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA P F D KFS D + + LA+ ++
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQ-IDGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ E R V+ +L A S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLTLMGETRDVELAMLPEPTADT-APVSDAQIKQWYD 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + L+ YE+ K ++ P+ R ++
Sbjct: 238 GHPQDFRQPETVTIEYVELNAATLPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297
Query: 279 NQKEADEAFQ-----------SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+A + + G F LA+ + LG K +
Sbjct: 298 AGSDAAAQKAGEEKAAKLAAQAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K GD I FGY + + +K SF++V+ +A + A +
Sbjct: 358 --FEDALFAMKAGDVVGPIKTEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L I +L
Sbjct: 416 FADLSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRTDASG-------IAANPAVLRS 468
Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
F + + + + + +++ + L++V V +T +
Sbjct: 469 AFSETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVREKVIAAVHADRTKKSAV 528
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+ A+ L+ K G+ + + + + R +FS P
Sbjct: 529 AAADALLARVQK-GETLQSLAVAEKLQVTPIPGLPRTAPVPT---PAANRAIFSAPRPNE 584
Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
G Y VF V S G P +++ L+Q+ + + + ++
Sbjct: 585 GKPSAGKVELTGGRYAVFVVGKSTPGDLKQMPAEQQTMLREQLSQIDGGNAAQAYVKEMR 644
Query: 612 SQYSVTVHDNLI 623
+Y + + + +
Sbjct: 645 KRYKIQIEEAQL 656
>gi|77918655|ref|YP_356470.1| peptidyl-prolyl cis-trans isomerase [Pelobacter carbinolicus DSM
2380]
gi|77544738|gb|ABA88300.1| peptidyl-prolyl cis-trans isomerase [Pelobacter carbinolicus DSM
2380]
Length = 649
Score = 228 bits (579), Expect = 3e-57, Method: Composition-based stats.
Identities = 110/660 (16%), Positives = 241/660 (36%), Gaps = 42/660 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSF 56
ML++IRK R+ + KI + F+ S S + V + + F
Sbjct: 1 MLDLIRKKQRSVLVKIVFWTIIAAFVGTIFLVWGKGNSGSGGDGSAIAHVNGDAISYQDF 60
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ + ++ G + E + + L+ + + LV+ L Q ++ + D +
Sbjct: 61 QITYQNMRQEMEKRFGRSLPPEIEKQLQLNTQAYEQLVNRLLLLQEADNRDIAVDKDELR 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
IA P F KD +F + LA + + + + + + L VV ++
Sbjct: 121 QAIADIPAFQ-KDGQFDRKRYQEVLAYQHLTSRAFERNMREQLLLGKVVEAIKQDAEVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+D R E + ++ L + ++ L +F++ ++++R PE + ++
Sbjct: 180 QDIDHEYRNRNEKIDLAFVKLAPGRYESKVTVTDEALQAYFQENREDFRQPEKIALRFVR 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEAD 284
FD K I + + +Q Y+K+K++Y+ E ++F + A
Sbjct: 240 FDPDNVAKDISVDDAAIQDYYDKHKDQYWVEEQVKASHILFRITAGLDEDGRQKKRAAAQ 299
Query: 285 EAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ + + GK F QLA + +LG F+ + + K G +
Sbjct: 300 KVLEQARAGKDFAQLARTHSDDAGSAIKGGALGYFTHGSMVPDFENVA--FALKPGQISD 357
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ S GY I + T +V+ D+ +R A + +
Sbjct: 358 LVETSMGYHIIKCEGRIEAQTKPLDDVRDDVRANLRKELARQDALDKAMMAYSAHRQDGD 417
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+D + + + L G+ + + ++L F + V D
Sbjct: 418 IDAAASANGLQVRETGLFSR------GEAIDGLGSDDELSMAAFALKEGELARPIVR--D 469
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ +KE + +L+E +V++ ++ ++ A ++ E K GK D+
Sbjct: 470 QGVLTFVVKERHASYIPELKEARAEVERAYRRQESVGLARQAAEAVLAEL-KAGKKLADV 528
Query: 521 GKNLGASLLTTNQINRM--DNENKFFGYDGISQV-FSGPVEM-VKCFPIENGLSYVVFKV 576
+ + T R + + + ++ F+ E V +VV +
Sbjct: 529 ARKEKVEMGETGLFPRSYGNFIPRIGSSEALATAGFALTKEAPVADEVYVIDGRFVVATL 588
Query: 577 TNSKVGPV-----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ +++ + + + LL ++ LKS+ + V + +Q L+GEK
Sbjct: 589 MHRMEADPAKLTDAAREQLRTSVLTNKREKLLTELVEKLKSEAKIKV-EPTLQNILEGEK 647
>gi|319404079|emb|CBI77667.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella rochalimae
ATCC BAA-1498]
Length = 629
Score = 228 bits (579), Expect = 3e-57, Method: Composition-based stats.
Identities = 158/638 (24%), Positives = 304/638 (47%), Gaps = 16/638 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML+ +R + +WVAKIFL L + F++ WG+ + + +++ G+ + ++ +
Sbjct: 1 MLKTMRNSVNSWVAKIFLSTLLLCFILLWGVPQ--LHTTNKNELLTSGKSTITVDTYHLA 58
Query: 60 WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ ++ + + + + + +L+ L D+ + + +
Sbjct: 59 LADQSLRLALTSNLRRMFTPDEIQRYKIPFFVLNQLQQDVLFDEQARKMKINLSKDMIAR 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +F + F+ D+F++ L + NE ++ +YTK R ++ + GMR ++
Sbjct: 119 IIGNDDIFQ-YNRVFNRDLFLNYLQQLQTNENNFLKYYTKKEKRNQLISASLAGMRAPDI 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ E R DY+V++ + IADP+ +L +WF+ +K+ +RAPEY+ +S
Sbjct: 178 FYKALATYHEEKRIADYLVIDLKKEKKIADPNPEILEKWFDTHKNKFRAPEYRTVSLFSI 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
E K IS +E+Q Y +N ++ +PE R +E+L F ++ AD A + + +G F
Sbjct: 238 TSEEFLKPQNISVNEIQTYYTQNTSRFITPEKRIIEELRFSTREAADNAAKKIAEGLSFD 297
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L +E+ K+LSDI+ G ++ +P+ S KKG+ + VI+ G VI V +I
Sbjct: 298 ALVKEEKKNLSDITRGPLAENELPN--HLASEIFELKKGEISAVINDLQGPVIIRVVHIT 355
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
PS + Q+V+ DI + A ++ Y +E G S+ E++++ K+ +
Sbjct: 356 PSTQIPLQKVENDIRQTLAQNYAVTHLRNKYTEIENARFKGASLTELAKQYKLPHRKI-T 414
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+D GK +G + +P KE LL ++ + + D ++LP+G Y+W Q+ IPARDR
Sbjct: 415 IDKTGKTTEGIILTDLPQKEVLLNAIYQSHEGIDVD-PLSLPEGGYLWYQVDTIIPARDR 473
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
L EV + WK + + KA ++ + +K GK+ + LG TT + R
Sbjct: 474 TLSEVKQNAIVQWKEEEIQRLLDEKAQDILKKLAK-GKSLDALATELGIIKQTTPALRRQ 532
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFISY 593
D ++ FG +G+ +F G + N + +V+K+T S V +
Sbjct: 533 DP-SQIFGVEGVKALFYGTKDHYGVVKGVNATNRIVYKITTSIVPEDITAHTLSSDIRTN 591
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ M+ +DL ++ +Y + ++ + R +
Sbjct: 592 IDTMIREDLKLEMLQAANKEYPIKINSSNYTRIFINFQ 629
>gi|187928946|ref|YP_001899433.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
12J]
gi|187725836|gb|ACD27001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
12J]
Length = 646
Score = 228 bits (579), Expect = 3e-57, Method: Composition-based stats.
Identities = 86/652 (13%), Positives = 227/652 (34%), Gaps = 44/652 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R R + L+++F F+ +G+ + S V + + +
Sbjct: 1 MLDFVRTHRRLMFL-VLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ + Q +G + + + + +LD ++ L + L + ++ I
Sbjct: 60 REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVLANEVVRANLTISNEKIRDTIL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P D F + +V L+ + + ++ + LS+ + V
Sbjct: 120 QIPAVAALRKPDGSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+++ + + R V ++ A + + + +++ ++ + PE + Y++F
Sbjct: 180 LVERLIQVRDQQREVQTLLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVF 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
E K+I ++ ++++ Y++N ++ + E R ++ A A
Sbjct: 240 SGEEMMKQIPVTPEQIKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEE 299
Query: 287 --FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ K F +LA++ LG K +++F+L + GD +
Sbjct: 300 VLAEVRKNPASFAELAKKYSGDPGSAAQGGELGFLGKGATV-PPFENALFALKQPGDISD 358
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-T 399
V+ FG+ I + +K + VK ++ ++R A++K E +
Sbjct: 359 VVQSDFGFHIIKLEEVKGGGVQPLEAVKPELERELRTQLANKKYSELADAFSNTVEDQSD 418
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVA 457
S+ ++ + K+ V + + +++L +F D + +
Sbjct: 419 SLKPVADKLKLQIQTTDNVTRT---PSPAQSGSPIGNDKVLKALFADDVIKNHRNTAAIQ 475
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ + + + E PA +KL +V VK + A + + +
Sbjct: 476 VGPTTLVAARAAEYRPATVKKLADVREQVKAKVIAEQAAALAKKAGEEKLAAVKQSNSAD 535
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--SYVVFK 575
++R + + ++ + + + Y +++
Sbjct: 536 G---------FGAAQTVSRQ--QAQGTPPAALTAILRADATKLPTTIGVDLGPQGYALYR 584
Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + L Q + ++ LK++ V ++ + +
Sbjct: 585 INKVLPPANVDETRRAADAQQLAQAAGQTEFNAYYEALKARSKVKINSSAVD 636
>gi|330994544|ref|ZP_08318468.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter sp.
SXCC-1]
gi|329758398|gb|EGG74918.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter sp.
SXCC-1]
Length = 665
Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats.
Identities = 116/638 (18%), Positives = 246/638 (38%), Gaps = 18/638 (2%)
Query: 1 MLEII-RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFI 57
ML + R +WV +I + F+ F+ +G+ D L ++ VG + + S+
Sbjct: 22 MLSFLYRVFVDSWVGRIVAGLFFLAFIGFGVGDVLMNIGTERADVAARVGSRPILVQSYQ 81
Query: 58 NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
N+ + E+ ++Q + ++ A + +++L LV A + + + GL V
Sbjct: 82 NALQSEMPQVAQSMHLSDPAQIPPATREQVARQVLQRLVLQAEIAEAADRHGLIVPDSVV 141
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI P F G + +F +F RL R G+ E I+ + + ++ G
Sbjct: 142 RDEIFSIPAFRGTNGQFDRALFNDRLHRTGMTEGRLIELVRQEQASRVLLEPIRDGATVP 201
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
++++ + F + R++D + + A P+ A L ++ + + APEY+ +
Sbjct: 202 DVMVRRLFDFEAQTRTIDLVRVPFDSQQVTATPTPAQLARYHANHPWEFTAPEYRHARVV 261
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ + ++I++ ELQ Y+ + + +PE R+V+ + P Q A
Sbjct: 262 VLSADTIGRMLDITDAELQKSYQDQAQTFSAPERRSVQIVTVPTQDRATALRARWTDAGA 321
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+ Q+ ++ G+ + + L + IP L + A + G+V+ V+
Sbjct: 322 WAQVQKDAGRDAAAVELPGMKQTDIPSADLGRA-IFAAPVDVTQGPVKSEGGWVVFRVTT 380
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ P+ T F +VK+ + +Q+ T+A + + ++L++ +A G + +
Sbjct: 381 LTPAHTTPFADVKQALHDQIAHTRAQALLADRVQKLQDAIAGGGLDSIPADLGAVAV--S 438
Query: 416 PLVDFAGKDVKGKEVAAIPYK--EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+D +G +G Q + + V PDG++ V + P
Sbjct: 439 GDLDASGNTHEGTPAPIPGSDAVRQAVIARVFSQAKGASPVLVQGPDGAWYAVSVDGVTP 498
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
L E V W+ +A + +G G +
Sbjct: 499 GHALDLAEAGPRVAAAWQADARRHMADQQATAFYNQAQGQGGLAHVTPAVPGLE--HSQP 556
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF--- 590
I+ M + + + +F + + E G SYVV +T +
Sbjct: 557 ISPMQPAPEI-PREVAALIFRLEK-VGQNVMTEAGDSYVVATLTAINHPDPATQKDLYGR 614
Query: 591 -ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ LTQ M +D+ L++ +++ ++ +
Sbjct: 615 VRAGLTQSMGEDIEMGYGGALEAIVKPRPNESALRAVM 652
>gi|261346360|ref|ZP_05974004.1| peptidyl-prolyl cis-trans isomerase D [Providencia rustigianii DSM
4541]
gi|282565674|gb|EFB71209.1| peptidyl-prolyl cis-trans isomerase D [Providencia rustigianii DSM
4541]
Length = 622
Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats.
Identities = 89/626 (14%), Positives = 228/626 (36%), Gaps = 16/626 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +R + + K+ L ++ + F++ G++ + S+ V Q + ++
Sbjct: 1 MMEDLRTKANSPFIKVLLAIIILSFVLTGVAGYVI-GGSSNDAAEVNGQPISREQLQQAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+QE + + +G S L + L+NL++ ++Q+ ++ L A ++
Sbjct: 60 QQERQSLQEYLGDKFAEVASNDEYMKELRTQALNNLINTQLINQYANELNLSASDKQIEQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +F D KF + + L+R IN + + L R + F G
Sbjct: 120 AIFAMQIFQT-DGKFDSEKYREILSRYNINADSFAAQIRQDLVRAQLGKSFTGTEFALPS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V +L V A + L +++ ++++ +PE ++SY+
Sbjct: 179 EVKAYAELFMQQREVRTAMLPLAEVQAKQTVTEEELKAYYDANQNSFISPEQVQVSYV-E 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
K ++++E+ Y++N + + E + + ++K+A LK G F
Sbjct: 238 MDAASMPKATVNDEEITTYYQQNLKNFTKAEQKLYSMIQVASEKDAQALETELKNGADFA 297
Query: 298 QLAEEQGKSLSDI-SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA E+ + G +L +KG + I YV+ + +I
Sbjct: 298 ALAAEKSTDKFSASNKGVIGWMEAASTPSEIISANLTEKGQVSAPIKVQDNYVLFRLDDI 357
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
P EVK I + K+ ++ + +++ E + ++ E + + +
Sbjct: 358 TPEAIKPLDEVKDSIKTSLTQDKSIKQFYDLQQKVSEAATNDN--ESLASVESVSGLKVS 415
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKESIPA 474
++ + + + ++ + + + V++ +
Sbjct: 416 NTEWFDRKNPPEALNFPKVINEIFSERLIDKNGATGINSDVINVEGDRAFVVRVTQYKAE 475
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V +++ K K ++ + ++L+ E + K G + +
Sbjct: 476 MTEPFDQVKSEIATLVKRQKAFTQLKADGDKLITELKAGKG--DEALKAAGTQFGSVQTV 533
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFIS 592
+ + + + + + +V ++ + +E + S
Sbjct: 534 SFIAPATDVTDVA-MKMTPPIDGKPTYSIAYDKQDNLLVVQLDKVTLGQPTAEELSQLGS 592
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTV 618
MM+ + +S++ L++ + +
Sbjct: 593 QYQAMMSSVVNESLMQNLRANAKIEI 618
>gi|149203720|ref|ZP_01880689.1| hypothetical protein RTM1035_06628 [Roseovarius sp. TM1035]
gi|149142837|gb|EDM30879.1| hypothetical protein RTM1035_06628 [Roseovarius sp. TM1035]
Length = 614
Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats.
Identities = 111/622 (17%), Positives = 249/622 (40%), Gaps = 32/622 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
+ + +L V +G ++ ++ VG ++ +++ + + E+ + + G
Sbjct: 11 MWVLMGLLIVGLAGFGATNL---SGNVRSIGHVGTAEIDVTTYARALQNEIRALEAERGS 67
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
++ AR+ G+D +L LV+ A L+ + +GL + +I P F G D F
Sbjct: 68 AMSFAEARAAGVDTDVLGRLVARAALEHEADRLGLSIGDENLREQILDIPSFQGLDGSFD 127
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + L + G+NE ++ ++ + T V + G++ + +D + E RS+
Sbjct: 128 REAYRFALDQAGLNESQFEENIRAETASTLVQAAALAGLQTPSTYMDTMMTYLAERRSLA 187
Query: 194 YIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ VL+ + PS L + + + ++ PE K I++ +E+
Sbjct: 188 FAVLDRAALQSGLPVPSEDDLKTYHQGHLPDFTTPETKTITFAWVTPAMILDSVEVDEAA 247
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
L+ Y + + ++ PE R VE+LVF + A A + G L E+G ++DI +
Sbjct: 248 LREAYAERETEFNMPERRLVERLVFADSAAATRARTRIDDGIALEMLVSERGLDMADIDM 307
Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
G S+E + + A+ G+ I + G + V+ + + +F+E + +
Sbjct: 308 GDVSREDLGAAA---DPVFSAQAGEVVGPIDTNLGPALFRVNAVLAAQITTFEEAEPRLR 364
Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
++ +A ++ +++ LA G +++++++ + +L +D+ +G
Sbjct: 365 EELAADRARRVIEAKIDTVDDLLAGGATLEDVAKETDL---ELGSIDWHPGLTEGM---- 417
Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
L DG +++ + R + LE+V V + W+
Sbjct: 418 --AGYDSFRAAAQAVATGDYPEVEQLADGGIFALRLDGIVEPRIQPLEDVRDAVLRGWRA 475
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
T + ++ + E + G +F D+ G + + R D + + I V
Sbjct: 476 EATVTALRAQLEPQLAEL-RAGASFADL----GLTATEVTDMTRRDYRPEA-PAEFIDTV 529
Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT--------QMMNKDLLD 604
F V+ IE V ++ + E+D+ ++ L + +DL
Sbjct: 530 FDMVQGEVR--VIEGNGRLFVLRLDSIAPPLPAEEDEDLARLRAALQDQAAADLGQDLFQ 587
Query: 605 SVIAYLKSQYSVTVHDNLIQRY 626
+ ++S+ V + +
Sbjct: 588 VLANDIRSRAGVELDQAALNAV 609
>gi|241663130|ref|YP_002981490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
12D]
gi|240865157|gb|ACS62818.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
12D]
Length = 646
Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats.
Identities = 87/652 (13%), Positives = 226/652 (34%), Gaps = 44/652 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R R + L+++F F+ +G+ + S V + + +
Sbjct: 1 MLDFVRTHRRLMFL-VLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ + Q +G + + + + +LD ++ L + L + ++ I
Sbjct: 60 REQTERLRQMLGAQYDPRQFEGPQMRRDVLDGIIQQRVLANEVTRANLTISNEKIRDTIL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P D F + +V L+ + + ++ + LS+ + V
Sbjct: 120 QIPAVAALRKPDGSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+D+ + + R V ++ A + + + +++ ++ + PE + Y++F
Sbjct: 180 LVDRLIQVRDQQREVQALLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVF 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
E K+I ++ ++++ Y++N ++ + E R ++ A A
Sbjct: 240 SGEEMMKQIPVTPEQIKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEE 299
Query: 287 --FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ K F LA++ LG K +++F+L + GD +
Sbjct: 300 VLAEVRKNPASFADLAKKYSGDPGSAAQGGELGFLGKGATV-PPFENALFALKQPGDISD 358
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-T 399
V+ FG+ I + +K + VK ++ ++R A++K E +
Sbjct: 359 VVQSDFGFHIIKLEEVKGGGVQPLEAVKPELERELRTQLANKKYSELADAFSNTVEDQSD 418
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVA 457
S+ ++ + K+ V + + +++L +F D + +
Sbjct: 419 SLKPVADKLKLQIQTADNVTRT---PSPAQSGSPIGNDKVLKALFADDVIKNHRNTAAIQ 475
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ + + + E PA +KL +V VK + A + + +
Sbjct: 476 VGPTTLVAARAAEYRPATVKKLADVREQVKAKVIAEQAAALAKKAGEEKLAAVKQSNSAD 535
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
++R + + ++ + + + Y +++
Sbjct: 536 G---------FGAVQTVSRQ--QAQGTPPAALTAILRADATKLPTTIGVDLGAQGYALYR 584
Query: 576 VTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + L Q + ++ LK++ V ++ + +
Sbjct: 585 INKVLPPANVDETRRAADAQQLAQAAGQTEFNAYYEALKARSKVKINSSAVD 636
>gi|325914922|ref|ZP_08177254.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
ATCC 35937]
gi|325538815|gb|EGD10479.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
ATCC 35937]
Length = 685
Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats.
Identities = 103/672 (15%), Positives = 226/672 (33%), Gaps = 65/672 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 30 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPTWW 88
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S ++LD LV +
Sbjct: 89 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 148
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V I F D KFS D + + LA+ ++
Sbjct: 149 LGAEDAGIVIGDATVRDYITNIQAFQV-DGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 207
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L A S+A + QW++
Sbjct: 208 LQQSVIPQAVAESGFATKTEFERLLKLMGETRDVELAMLPAPAADT-APVSDAQIKQWYD 266
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + L+ YE+ K ++ P+ R ++
Sbjct: 267 THAQDFRQPETVSIEYVELNAATMPPATAADEATLRKRYEEEKARFVEPDQRLASHILIT 326
Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+ A A + + G F LA+ + LG K +
Sbjct: 327 AGSDAAAQKAAEAKAAKLAADAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 386
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K GD I FGY + + +K SF++V+ A + A +
Sbjct: 387 --FEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQFAAEQLKADADKA 444
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L I +L
Sbjct: 445 YADISGKLVDQVYKNPTALEPAAKQVGVPVQTLGPFSRTTASG-------IAANPAVLRS 497
Query: 443 VFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
F + + + + + +++ + L++V V ++ + +
Sbjct: 498 AFSETLVQDGTVSDPITIAPNHSVMLRVTNHTAEQALPLDKVRDKVTAAVHADRSEKAAA 557
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+ A+ L+ K G+ + + + + + R +FS P
Sbjct: 558 AVADALLARVQK-GETLQALAASEKLQVQPIPGLPRTAPIPT---PAANRAIFSAPRPTE 613
Query: 561 KCFPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
+ +G + VF ++ + G P +++ L+Q+ + + + ++
Sbjct: 614 GKPSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMR 673
Query: 612 SQYSVTVHDNLI 623
+Y + + + +
Sbjct: 674 KRYKIQIEEAQL 685
>gi|317047179|ref|YP_004114827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b]
gi|316948796|gb|ADU68271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pantoea sp. At-9b]
Length = 622
Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats.
Identities = 103/629 (16%), Positives = 253/629 (40%), Gaps = 27/629 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A V KI L ++ + F++ G+ + L S V ++ + ++
Sbjct: 1 MMDNLRAAGNHVVLKIILGLIILSFVLTGVGNYLI-GGNSDYAAKVNGHEISRAELDQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E Q +G + S + ++ L L+ A LDQ+I+D+ + +V
Sbjct: 60 NTERNRQQQMLGDQFSQLASNEGYMQQMRQQALSQLIDQALLDQYIKDLHIGISDDQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I F + KF + + + G +Y + K L+ ++
Sbjct: 120 AIFNQQAFQT-NGKFDNVKYNGLITSMGFTADQYAEALRKQLATQQLINAVANTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R + ++ + A ++ ++Q+++++++++ APE R+SYI
Sbjct: 179 ETSKLVDLVAQQREIRQATIDVNALAAKQTVTDDEISQYYQQHQNSFMAPEQFRVSYIKM 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D ++ S ++Q+ ++++K Y P+ + + +A+ +LKKG+ F
Sbjct: 239 DAASLQE--NASEADIQSWFDQHKADYSQPQRNRYSVIQTKTEADANAVLDALKKGEDFA 296
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA+ + G P+ + + +L +KG + VI S G++IA + +I
Sbjct: 297 TLAKSKSIDPISARKGGDMGWLEPNTTPDELKNANLTEKGQLSGVIKSSVGFLIARLDDI 356
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P EV +A++++ KA + + +++ E + + ++ + + +
Sbjct: 357 QPEQVKPLSEVHDAVADKVKQEKAVDAFYKMQQKVSEAASN--DNESLAGAAEASGLKVV 414
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
D+ +D +++ K+ + V P + +++ ++I E P
Sbjct: 415 ETDWFSQDSVPQDLDFDAVKQAVFNGGLVGQNGAPGNNSDIISVDGDRAFVLRISEHKPE 474
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ L++V + K K ++ +AN+L+ + + ++ G +L + +
Sbjct: 475 AVKPLDQVKAQIADTLKHDKATQQAKEQANKLLADLNAGKQDGLQAA---GLTLSASKTV 531
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
+R + F+ P + + + V+ + G P + D
Sbjct: 532 DRNAQD------PVAQSAFNLPQPVDNKPSWGVSEDMQGNVVLVALDKVSTGSMPQPQID 585
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + +TQ + ++++ L+ + +
Sbjct: 586 QMVKGVTQNNAQIAFEALLENLRKEAKIK 614
>gi|319408341|emb|CBI81994.1| conserved exported hypothetical protein [Bartonella schoenbuchensis
R1]
Length = 628
Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats.
Identities = 151/635 (23%), Positives = 295/635 (46%), Gaps = 16/635 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML+ +R A +W A++F +L + F+ WG+ +++ G+ + ++ +
Sbjct: 1 MLDTLRSAKNSWFARLFFAILLLCFIFLWGIPQLYTQG--ERDLLTSGKSTITVDTYRLA 58
Query: 60 W--KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ ++ +G + E + + +L+ L ++ + + +
Sbjct: 59 LADQSLRLALNSHLGRMFTPEEIQQYRISAFVLNQLQQDVLFNEQARKMKINLSKDMIAQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I+ +F ++ FS D+F++ L + +N+ ++ D+YT+ R + + GM+ +L
Sbjct: 119 AISADNIFQ-ENGAFSRDLFLNFLQQLRVNQNDFFDYYTQKEKRNQLTLALLSGMKVPDL 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R DY ++N + + ADP L +WF+ +K+ +RAPEY+ +S +
Sbjct: 178 FYKAFAIYQEETRIADYFIVNLKEKESTADPDQKTLQKWFDTHKNAFRAPEYRTVSLLSI 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + +IS DE + Y +N ++ +PE R +E+L FP +K ADEA + + G F
Sbjct: 238 TPEKLVQLEDISKDEAKTYYTQNISRFTTPEKRIIEELRFPTRKAADEAAKKIADGLSFD 297
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L + + K+L+DI G K P+ +S KKG + VI G VI V +I
Sbjct: 298 DLVKAEKKTLNDIKKGPLVKSERPN--YLESEIFELKKGQVSTVIDDLQGPVIIRVIDIT 355
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
PS + F+ V+K+I + +A+ + Y +E G S+ EI+ + + +
Sbjct: 356 PSSPIPFETVEKNIRQTLAQNRAATDMHNKYTEIENARFEGASLKEIADQYNLPLRKV-T 414
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+D G ++G + +P K+ LL ++ + D ++L +G Y+W Q+ IP+RDR
Sbjct: 415 IDKKGITIEGITLTDLPEKDILLDAIYQANVETEPD-LLSLQEGGYLWYQVDTIIPSRDR 473
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
LEEV D WK+ + + KA + + +K GK+ + G TT + R
Sbjct: 474 ALEEVKQDAIAQWKSEEIQRLLDEKAENALKQLNK-GKSLDSLAAEFGVKKQTTQALRRQ 532
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
D+ ++ FG++ I +FS P + +V+K+T S + S +
Sbjct: 533 DS-SEVFGFEDIKALFSKPKGHYGIAKGTLTTNRIVYKITASAIPDNITAQTISSDVRNN 591
Query: 598 M----NKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ +DL ++ ++ V ++++ R +
Sbjct: 592 LDMMIREDLKLEILQVANKEHPVKINNSNYNRIFN 626
>gi|325927445|ref|ZP_08188692.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
91-118]
gi|325542195|gb|EGD13690.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
91-118]
Length = 656
Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats.
Identities = 105/670 (15%), Positives = 229/670 (34%), Gaps = 61/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA P F D KFS D + + LA+ ++
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQV-DGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L A S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLKLMGETRDVELAMLPPPAADT-APVSDAQIKQWYD 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-- 276
+ ++R PE I Y+ + L+ YE K ++ PE R ++
Sbjct: 238 GHAQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297
Query: 277 ---------FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
K A A ++ + G F LA+ + LG K +
Sbjct: 298 AGADAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K G+ I FGY + + +K SF++V+ +A + A +
Sbjct: 358 --FEDALFSMKAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L + A +
Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRSDASGVAANPAVL-----RAAF 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + + +++ + L++V V + + E+V++
Sbjct: 471 SETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRA-EKVAAA 529
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A +L ++G+ + + + + + R +FS P
Sbjct: 530 AADALLARLQKGETLQALADSEKLQVQPIPVLPRTAPIPT---PAANRAIFSAPRPTEGK 586
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ +G + VF ++ + G P +++ L+Q+ + + + ++ +
Sbjct: 587 PSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMRKR 646
Query: 614 YSVTVHDNLI 623
Y + + + +
Sbjct: 647 YKIQIEEAQL 656
>gi|218781789|ref|YP_002433107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
alkenivorans AK-01]
gi|218763173|gb|ACL05639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
alkenivorans AK-01]
Length = 624
Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats.
Identities = 105/638 (16%), Positives = 224/638 (35%), Gaps = 41/638 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML ++R+ + +W+ KI L ++ + F+ + + + V + + ++F +
Sbjct: 1 MLSMMREHATSWIIKILLGIIVLVFVFS--FGYSSFQNRGNRLAVVNGETISRNTFERMY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
K +K G + + L + + D+LV L Q D+G++ + +IA
Sbjct: 59 KNVYDYNREKFGDSFDYDL-----LRQNVFDDLVDNVLLLQHARDLGMQVTEDELVQDIA 113
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++ +F +F + L+R G+ K+Y + + T + + + S+
Sbjct: 114 QTQVFQTSSGQFDPKRYEYILSRSGVTSKDYEAEKARNMLSTKIRSYLMAMAQVSDEEAR 173
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + + S+ Y++ + + + +++ + +Y ++SY+ F+
Sbjct: 174 QWYNWDAKQVSMKYVLFEPSTFTDVVA-TEDQIQAYYDAHSADYETLPMAKVSYLYFNPK 232
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290
+ K++ I +E++ Y+ N + Y+ + ++ K+A E +
Sbjct: 233 DFLKEVSIPQEEIELFYDDNLDSYYEDQQVHARHILISLAKDAPEEKAAEALKKAQEIEA 292
Query: 291 --KKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
K G+ F +LA+E + + LGSF + + + G+ + +
Sbjct: 293 KAKAGEDFAELAKEFSDGPTAKNGGDLGSFPRGRMVKPFEDAA--FALNAGEISDPVRTD 350
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ I V IK + T EV+ I +++ A ++ + + L M + +
Sbjct: 351 FGFHIIKVEEIKEARTKELSEVEDSIRSKLAADVALDEAYNAAEAAFDNLLSDMDMAKAA 410
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ G D V D +
Sbjct: 411 ADAGVELKTTDYFTEQGPAGVANPQEM---------ADEVFDMYKDSFSDVLQFDDGFYI 461
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V + + PA +LEEV V D K A+ KA + + E K GK+ D
Sbjct: 462 VWMLDKKPAIIPELEEVKAKVAADVKKEVMAQAAIDKAAEFLEE-VKGGKSMEDAAAAYN 520
Query: 526 ASLLTTNQINRMDNENKFFGYDGI--SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
++ T R + + + P+E V V K
Sbjct: 521 VTVKNTGFFKRGGYIPDLGDEPAVASAAFLADAANPYPDAPVEGVKGVFVTCVLEEKYPE 580
Query: 584 VQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVT 617
+ Q + +L+ + L+ + V
Sbjct: 581 ADGFADQKESIKQRLLWGKRSRVLEDTLDVLRERGEVK 618
>gi|99080985|ref|YP_613139.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. TM1040]
gi|99037265|gb|ABF63877.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. TM1040]
Length = 611
Score = 227 bits (578), Expect = 4e-57, Method: Composition-based stats.
Identities = 127/629 (20%), Positives = 249/629 (39%), Gaps = 30/629 (4%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
++K S+T+V I + +LFV +G A+ + T+ +VG V + + +QE
Sbjct: 1 MKKLSKTFV-WILMGLLFVGLAGFG---AINVSGTTRTLATVGDATVSVDDYARALQQEQ 56
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
I + G + + ++G+D+ +L LV+ A LD + +IGL + EI R
Sbjct: 57 RAIQAQSGQSIPLSQLIAMGVDRGVLSGLVATAALDNELTEIGLSVGDEVLLEEITRISA 116
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
F G D FS D + L G++E E+ +RT + G GG R +L +
Sbjct: 117 FQGSDGSFSRDNYRFALDNAGLSEAEFEADMRSETARTLLQGAITGGTRMPAVLGETLTN 176
Query: 185 FYFENRSVDYIV-LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+ RS Y+ P+ L ++E + +++ PE K I+Y+
Sbjct: 177 YIGARRSFSYVRLAEANVPLTAIAPTEDALKAYYETHIEDFTLPETKVITYVALRPDALV 236
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAFQSLKKGKKFIQLAEE 302
++E+ L+ YE+ ++ PE R VEQLVFP++ + G F L +
Sbjct: 237 DQVEVDETALRGLYEERDAEFNVPERRLVEQLVFPDEDAAQTAKAELDVGGTTFETLVAD 296
Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
+ SLSDI +G + + A G + FG + V+ + +
Sbjct: 297 RELSLSDIDMGDVAIGDLGAAG---EAVFAADVGAVVGPLPSDFGPALYRVNGVLEANFT 353
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
SF+E + ++ + +A ++ + L++ LA G ++++++ E + L +D+
Sbjct: 354 SFEEALPVLREELALDRARRLIESRAEGLDDALAGGATLEDLAEEEN--GVVLGQLDWTA 411
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
L DGS +++ E +P R E+
Sbjct: 412 NTTDDI------AAYDTFRNAAEAVTTEDFPEVGYLEDGSLFALRLDEVLPPRPEPFEDA 465
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
T V + ++ + A+ ++++A Q+ F + G ++ + R ++
Sbjct: 466 RTAVSEAYEGDRIAKALAAQAEQIKTATEGNNGQFPE-----GREVIEQTGLTRTAYLDQ 520
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-----DKFISYLTQM 597
D ++QVF V V+ G VV ++ L Q
Sbjct: 521 T-PVDLLNQVFEMEVGEVRVVSDAEGT--VVVRLDEILPPDDGNDMQFLSQALGDQLNQS 577
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ ++ + ++++ V+ +
Sbjct: 578 LSNEIFQIYLQSVQTRARPQVNQQAVNAV 606
>gi|291614259|ref|YP_003524416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
lithotrophicus ES-1]
gi|291584371|gb|ADE12029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sideroxydans
lithotrophicus ES-1]
Length = 628
Score = 227 bits (577), Expect = 4e-57, Method: Composition-based stats.
Identities = 93/647 (14%), Positives = 245/647 (37%), Gaps = 45/647 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + +++ R + +I L ++ +PF WG++ + SG++ + +V +K+ F ++
Sbjct: 1 MFDFVQEKRR--LVQIVLALIILPFAFWGVTSY-RNSSGTAPLATVNGEKIGQQEFDSAM 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
Q+ + + G + + +LD LV+ + + +GL +V I
Sbjct: 58 NQQQQRVREMAGANFDPAFFDKPEIKFSLLDRLVTQHLMAMEAKKVGLSITDEQVGQIIV 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F +D +F + + L +G + + + + + + +
Sbjct: 118 NIGAFQ-QDGRFDRQRYEAVLRDKGKTPSGFDAEIRQAVLLQQLTESYTQNGYAPESIAE 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R V L+ S+ +++++ K ++ PE ++ Y++
Sbjct: 177 KLIHLNEQQRVVAIADLDAAAFVKQVKLSDGAVSEYYNKNLQEFQLPERAQVQYVVLSSD 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----------- 289
++++ ++E++ YE+++ + + E R ++ K+A +A +
Sbjct: 237 SLLSQVKVRDEEVKQYYEEHQADFGTQEQRHAAHILITVPKQASDAEKQAARTKAEQILK 296
Query: 290 --LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+ KF LA++ + + LG F + + + K G + ++
Sbjct: 297 LVKQSPAKFAALAKQYSQDPGSASNGGDLGEFGRGAMVKP--FEDSVFSLKVGQVSDLVQ 354
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
FGY I + +KP+ + EV+ I Q+++ +A++ E ++ + + +
Sbjct: 355 TDFGYHIIKLIAVKPAKIQALAEVRDMIIQQLKLQRANDMFAELAEKFNNTVYEQSDSLK 414
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDG 461
+ +S+ + G+ G + +++L VF D +K +T + +
Sbjct: 415 PAAELAKLSVQQGVWLSKGQPPAG------LWTDKVLQAVFSDDAIKNKRNTAALEVGPN 468
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ ++ + PA R L EV +++ ++ +E + + + K
Sbjct: 469 KLLAARVTDYKPASVRPLTEVSAAIQQKLLQLQASELARQQGRDFLGKLQHGEKP----- 523
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-SYVVFKVTNSK 580
G I R N + + +FS + + + + + ++ K
Sbjct: 524 ---GVKWTAAQSITRNQRSN--IDPELLQAIFSADTSKLPAYVGVDSASGFKLARIDEVK 578
Query: 581 VG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++ + Q+ L + + + + S+T+ + +
Sbjct: 579 DAATVDEGKIARYEQQIRQITGDALWRAYMEDARKRASITMKEFAAE 625
>gi|126439578|ref|YP_001059347.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
668]
gi|126219071|gb|ABN82577.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
668]
Length = 644
Score = 227 bits (577), Expect = 5e-57, Method: Composition-based stats.
Identities = 93/643 (14%), Positives = 221/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + L+++ I G+ S+ V +V K+ + F +
Sbjct: 1 MLDFFRNHQR-LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G +++ + +++LD L+ L + + L A G V +
Sbjct: 60 RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D F + + LA +G+ +Y + L+ + V
Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V +VL + A P++A ++ +++ +K + E I Y+++
Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S+ +++ Y+ N Y + V + K+A A ++ + K
Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAARAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ + D KK + +
Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G FG+ I +++KP+ EVK IA +R A++ ++ + +
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V + K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAIDIGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ P+ L+ + V+ + A + E K
Sbjct: 480 NTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKSKSTAGFA 539
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
++I+R + +S ++ + + + + Y +F+V +
Sbjct: 540 A---------PDKISRT--QAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNS 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + L Q+ + + +A L+++ V +
Sbjct: 589 VVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631
>gi|121601506|ref|YP_993264.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
SAVP1]
gi|124383444|ref|YP_001029291.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
NCTC 10229]
gi|126449228|ref|YP_001080774.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
NCTC 10247]
gi|167738127|ref|ZP_02410901.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia
pseudomallei 14]
gi|217421364|ref|ZP_03452868.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei 576]
gi|237812671|ref|YP_002897122.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
MSHR346]
gi|251766653|ref|ZP_04819742.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
PRL-20]
gi|254179433|ref|ZP_04886032.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
1655]
gi|254198164|ref|ZP_04904586.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei S13]
gi|254297318|ref|ZP_04964771.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
406e]
gi|254358198|ref|ZP_04974471.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
2002721280]
gi|121230316|gb|ABM52834.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
SAVP1]
gi|124291464|gb|ABN00733.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
NCTC 10229]
gi|126242098|gb|ABO05191.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
NCTC 10247]
gi|148027325|gb|EDK85346.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
2002721280]
gi|157806973|gb|EDO84143.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
406e]
gi|169654905|gb|EDS87598.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei S13]
gi|184209973|gb|EDU07016.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
1655]
gi|217395106|gb|EEC35124.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei 576]
gi|237505475|gb|ACQ97793.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
MSHR346]
gi|243065067|gb|EES47253.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
PRL-20]
Length = 644
Score = 227 bits (577), Expect = 5e-57, Method: Composition-based stats.
Identities = 94/643 (14%), Positives = 221/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + L+++ I G+ S+ V +V K+ + F +
Sbjct: 1 MLDFFRNHQR-LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G +++ + +++LD L+ L + + L A G V +
Sbjct: 60 RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D F + + LA +G+ +Y + L+ + V
Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V +VL + A P++A ++ +++ +K + E I Y+++
Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S+ +++ Y+ N Y + V + K+A A ++ K K
Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ + D KK + +
Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G FG+ I +++KP+ EVK IA +R A++ ++ + +
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V + K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAIDIGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ P+ L+ + V+ + A + E K
Sbjct: 480 NTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKSKSTAGFA 539
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
++I+R + +S ++ + + + + Y +F+V +
Sbjct: 540 A---------PDKISRT--QAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNS 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + L Q+ + + +A L+++ V +
Sbjct: 589 VVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631
>gi|289668772|ref|ZP_06489847.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 656
Score = 227 bits (577), Expect = 5e-57, Method: Composition-based stats.
Identities = 105/670 (15%), Positives = 229/670 (34%), Gaps = 61/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L VPFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMVPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA F D KFS D + + LA+ ++
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIQAFQV-DGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L V A S+A + QW+E
Sbjct: 179 LQQSVIPQAVAESGFATKAEFERLLKLMGETRDVELAMLPPSAVDT-APVSDAQIKQWYE 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + + L+ YE+ K ++ P+ R ++
Sbjct: 238 GHTQDFRQPETVTIEYVELNAAKMPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297
Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+ A A ++ + G F LA+ + LG K +
Sbjct: 298 AGSDAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKNAGGDLGWVEKGAMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K GD I FGY + + +K SF++V+ +A + A +
Sbjct: 358 --FEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L A +
Sbjct: 416 FADISGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRTDASGVAANPAVL-----RAAF 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + + +++ + L++V V + ++ + ++
Sbjct: 471 SETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRSEKAAAAA 530
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A+ L+ K G+ + + + + + R +FS P
Sbjct: 531 ADALLARVQK-GETLQALAASEKLQVQPIPGLPRTAPIPT---PAANRAIFSAPRPTEGK 586
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ +G + VF ++ + G P +++ L+Q+ + + + ++ +
Sbjct: 587 PSVGKVQLDGGRFAVFVISKATPGDLKQMPAEQQAMLREQLSQIDGNNAAQAYVKEMRKR 646
Query: 614 YSVTVHDNLI 623
Y + + + +
Sbjct: 647 YKIQIEEAQL 656
>gi|134277039|ref|ZP_01763754.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
305]
gi|134250689|gb|EBA50768.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
305]
Length = 644
Score = 227 bits (576), Expect = 6e-57, Method: Composition-based stats.
Identities = 93/643 (14%), Positives = 220/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + L+++ I G+ S+ V +V K+ + F +
Sbjct: 1 MLDFFRNHQR-LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G +++ + +++LD L+ L + + L A G V +
Sbjct: 60 RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D F + + LA +G+ +Y + L+ + V
Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V +VL + A P++A ++ +++ +K + E I Y+++
Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S+ +++ Y+ N Y + V + K+A A ++ K K
Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ + D KK + +
Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G FG+ I +++KP+ EVK IA + A++ ++ + +
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLTQQFAAKAFADNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V + K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAIDIGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ P+ L+ + V+ + A + E K
Sbjct: 480 NTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKSKSTAGFA 539
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
++I+R + +S ++ + + + + Y +F+V +
Sbjct: 540 A---------PDKISRT--QAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNS 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + L Q+ + + +A L+++ V +
Sbjct: 589 VVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631
>gi|152986261|ref|YP_001348850.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PA7]
gi|150961419|gb|ABR83444.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas aeruginosa PA7]
Length = 621
Score = 227 bits (576), Expect = 6e-57, Method: Composition-based stats.
Identities = 96/639 (15%), Positives = 221/639 (34%), Gaps = 42/639 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + V+ V + G + + S+ V + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGVIIVLLSLTGFDAIIRATDHSNVAAKVNGDDISLNEVQQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G + L + L L+ L Q +D + I
Sbjct: 61 DMQRRQLLQRLGKDFDPSMLDDKLLKEAALKGLIERTLLLQAAKDDKFAFSDQALDQLIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D KF+ D F + + + ++ + + + G ++ L
Sbjct: 121 QTPEFQV-DGKFNADRFDQVIRQMNYSRLQFRQMLGQEMLIGQLRAGLAGTGFVTDNELQ 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L + + + + + ++E +K + PE + Y+
Sbjct: 180 SFARLE--RQTRDFATLAVKADASKSSVAEDEVKAFYEGHKSEFMTPEQVVVEYVELKKS 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-------EADEAFQSLKKG 293
++++ ++L A Y+K + ++ + DE L KG
Sbjct: 238 SFFDQVKVKQEDLDALYQKEIANLSEQRDAAHILIEVNDKTSDEQARAKIDEIKARLAKG 297
Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ F LA+E + + LG + + D + +++ K+G+ + + +GY
Sbjct: 298 EDFAALAKEFSQDIGSAATGGDLGYAGRG-VYDPAFEEAL-YALKQGEVSAPVKTPYGYH 355
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + ++ S + +K + ++++ ++ E K LE + + ++
Sbjct: 356 LIKLLGVQAPEVPSLESLKPKLEDELKKQMVEQRFVEATKDLESSAYEAADLSQPAQEMG 415
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQ 467
+ +G D I Q++ F + + L + + ++
Sbjct: 416 LKVQTSQPFGRSGGDG-------IAANRQIVQAAFSTEVLEEAANSGAIELDPDTVVVLR 468
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+KE +++ LE+V ++ K AE + L+ E + G +
Sbjct: 469 VKEHNKPKEQPLEQVAAGIRDRLAAEKAAEAAKKQGEALIAELREGRAP-----SKPGEA 523
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG-----LSYVVFKVTNSKVG 582
+R + + VF K P +G YVV ++
Sbjct: 524 WKVVEAASRGQ---EGIDPKLLQTVFRMQRPEAKDKPSFSGVTLANGDYVVIRLNGVSEP 580
Query: 583 P----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK + +L ++ + L+ + V
Sbjct: 581 EQAISDDEKAMYRRFLASRSGQEDFAAFRRQLQDKAEVE 619
>gi|320540341|ref|ZP_08039993.1| putative peptidyl-prolyl cis-trans isomerase (rotamase D) [Serratia
symbiotica str. Tucson]
gi|320029661|gb|EFW11688.1| putative peptidyl-prolyl cis-trans isomerase (rotamase D) [Serratia
symbiotica str. Tucson]
Length = 628
Score = 227 bits (576), Expect = 6e-57, Method: Composition-based stats.
Identities = 115/638 (18%), Positives = 252/638 (39%), Gaps = 25/638 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ KI LV++ + F++ G+ + L G V Q + + +
Sbjct: 1 MMDNLRAAANHVALKIILVLIILSFILTGVGNYLIGGFG-DYAAKVNGQVIERAQLEQVF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + Q++G + + +++L L+ L Q+ + +GL ++
Sbjct: 60 QSERQRMQQQLGDQFSVLAGNEGYMQRMRQQVLSQLIDNMLLAQYAKKLGLSVSDEQIKN 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I ++P F D +F + ++ L G ++ + L V F
Sbjct: 120 AIRKTPYFQT-DGQFDNAKYLDLLGSMGYTVDDFAQSMRQQLVNQQVTQAFGESGFMLPA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ R+V ++ + A + S+ L ++++ ++++ APE ++SYI
Sbjct: 179 ESQAMAALLLQQRNVRLATIDLSALQAKQNVSDDELKAYYQQNQNSFIAPEQIKVSYISI 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + K+++S+ ++ A Y+++K Y PE + + + EA+ LKKG F
Sbjct: 239 DAVSMQDKVKVSDTDISAYYDRHKSSYGQPERKNYSVIQLKTETEANAVLSELKKGGDFA 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA+++ + G P+ + + L +KG + V++ S GY+I +++I
Sbjct: 299 TLAKDKSTDIISRRTGGELGLLEPETTADELKQAHLTEKGQLSSVVNSSIGYLIVRLNDI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P +V + IA Q+R KA + +++ + + ++ E++ +
Sbjct: 359 EPEKMKPLSDVHETIAKQVRREKAIDAYYALQQKVSAA--ATSDNESLASAEEVAGVKAA 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ +D + P + + + P S + + V++
Sbjct: 417 QTGWFTRDSIPAALNFKPVVQSIFDGSLLGENGAPGSNSDVITVEGDRAFVVRVTAHKAE 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V V + K K E+ + QL++E + + K G S + ++
Sbjct: 477 GIEPFDQVKDRVAEWVKHNKALEKAKLQGEQLLVELKQGKG--DEAMKAAGLSFGSVQKM 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKD 588
R +N + VF+ P V + + V+ + K G P E
Sbjct: 535 VRASEDN-----PLVENVFALPHPQEGKPVYGMSQDRQDNVVLIALDVVKPGSLPADEIK 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
F+S + Q S++A L+ + + ++Y
Sbjct: 590 TFVSKMEQSAASGTFYSLLASLRKDAKI--NMGAAEQY 625
>gi|121602029|ref|YP_988842.1| hypothetical protein BARBAKC583_0527 [Bartonella bacilliformis
KC583]
gi|120614206|gb|ABM44807.1| conserved hypothetical protein [Bartonella bacilliformis KC583]
Length = 629
Score = 227 bits (576), Expect = 6e-57, Method: Composition-based stats.
Identities = 144/638 (22%), Positives = 299/638 (46%), Gaps = 16/638 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML+ IR + +WV KIF +L + F+ WG+ ++ S +++ G+ + + +
Sbjct: 1 MLDSIRNTTNSWVTKIFFAILLLCFVFLWGIPQ--LNIKNESNLLTSGKSVITVDDYRLA 58
Query: 60 WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++ ++G +++ + + G+ + L D+ + + +
Sbjct: 59 LADYSLRLALASQLGRMLSPDEIQQYGIPAFVFYQLQQDILFDEQARKMKISLSQDALAH 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I+ +F + F+ ++F++ L + I++ ++D+YT+ R ++ + G + NL
Sbjct: 119 IISSDSIFQT-NGNFNRNLFLNYLQQLNISQSHFLDYYTQREKRNQLILASLSGAKIPNL 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R+ DY+V+N I+ P+ L +WF+ +++ +RAPEY+ +S +
Sbjct: 178 FYEAFALHREEKRTADYLVVNLEKEKKISTPNKETLQKWFDTHRNMFRAPEYRTVSLLSI 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ K IS +E Y +N ++ PE R +E+L FP ++ AD+A Q + G F
Sbjct: 238 TPNDFVKLENISANEAMTYYNQNASRFTVPEKRIIEELRFPTREAADKAAQKIANGMSFD 297
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
QL + + K+L DI G ++ +P+ S K+G + VI+ G +I V I
Sbjct: 298 QLVQSEKKTLKDIKKGPLAESELPN--YLASDIFELKQGQISAVINDLQGPIIVRVMQII 355
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
PS + F+++++DI + +A ++ Y +E G S+ E++ + + +
Sbjct: 356 PSGPIPFEDIEQDIRQTLAQNRAVTDLRSKYTEIENARFEGASLKELADQYNLSLRQI-T 414
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+D GK ++G + +P KE +L ++ + D ++L +G Y+W Q+ PARD+
Sbjct: 415 IDKEGKTIEGVMLTDLPQKEIVLSAIYQATEGSELD-PLSLQEGGYLWYQVDAITPARDK 473
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
LEEV + +WK K + + KAN ++ + EGK+ + L TT + R
Sbjct: 474 ALEEVEKEAVAEWKNAKIQQLLDEKANNILKQL-TEGKSLDSLAAKLSVKKKTTPALRRQ 532
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
D+ + G +G+ +FSGP + +++K+T S + S + +
Sbjct: 533 DS-SDILGIEGVKALFSGPKGHYGIIKGAVATNRIIYKITESSIPKNVTAQTIPSDIRED 591
Query: 598 ----MNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ +DL ++ ++ + ++ + + +
Sbjct: 592 MDMTLKEDLKLGMLQIANEEHPIEINGSNYNQLFSTSQ 629
>gi|226197150|ref|ZP_03792727.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei Pakistan 9]
gi|225930529|gb|EEH26539.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei Pakistan 9]
Length = 644
Score = 227 bits (576), Expect = 6e-57, Method: Composition-based stats.
Identities = 94/643 (14%), Positives = 221/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + L+++ I G+ S+ V +V K+ + F +
Sbjct: 1 MLDFFRNHQR-LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G +++ + +++LD L+ L + + L A G V +
Sbjct: 60 RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D F + + LA +G+ +Y + L+ + V
Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V +VL + A P++A ++ +++ +K + E I Y+++
Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S+ +++ Y+ N Y + V + K+A A ++ K K
Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ + D KK + +
Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G FG+ I +++KP+ EVK IA +R A++ ++ + +
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKRLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V + K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAIDIGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ P+ L+ + V+ + A + E K
Sbjct: 480 NTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKSKSTAGFA 539
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
++I+R + +S ++ + + + + Y +F+V +
Sbjct: 540 A---------PDKISRT--QAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNS 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + L Q+ + + +A L+++ V +
Sbjct: 589 VVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631
>gi|289664180|ref|ZP_06485761.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 656
Score = 227 bits (576), Expect = 7e-57, Method: Composition-based stats.
Identities = 104/670 (15%), Positives = 229/670 (34%), Gaps = 61/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L VPFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMVPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA F D KFS D + + LA+ ++
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIQAFQV-DGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L V A S+A + QW+E
Sbjct: 179 LQQSVIPQAVAESGFATKAEFERLLKLMGETRDVELAMLPPSAVDT-APVSDAQIKQWYE 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + + L+ YE+ K ++ P+ R ++
Sbjct: 238 GHTQDFRQPETVTIEYVELNAAKMPPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297
Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+ A A ++ + G F LA+ + LG K +
Sbjct: 298 AGSDAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKNAGGDLGWVEKGAMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K GD I FGY + + +K SF++V+ +A + A +
Sbjct: 358 --FEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L A +
Sbjct: 416 FADISGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRTDASGVAANPAVL-----RAAF 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + + +++ + L++V V + ++ + ++
Sbjct: 471 SETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRSEKAAAAA 530
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A+ L+ K G+ + + + + + R +F+ P
Sbjct: 531 ADALLARVQK-GETLQALAASEKLQVQPIPGLPRTAPIPT---PAANRAIFTAPRPTKGK 586
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ +G + VF ++ + G P +++ L+Q+ + + + ++ +
Sbjct: 587 PSVGKVQLDGGRFAVFVISKATPGDLKQMPAEQQAMLREQLSQIDGNNAAQAYVKEMRKR 646
Query: 614 YSVTVHDNLI 623
Y + + + +
Sbjct: 647 YKIQIEEAQL 656
>gi|53723660|ref|YP_103105.1| peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei ATCC
23344]
gi|67642012|ref|ZP_00440775.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia mallei GB8
horse 4]
gi|254177616|ref|ZP_04884271.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
ATCC 10399]
gi|254200054|ref|ZP_04906420.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
FMH]
gi|254206388|ref|ZP_04912740.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
JHU]
gi|52427083|gb|AAU47676.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia mallei
ATCC 23344]
gi|147749650|gb|EDK56724.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
FMH]
gi|147753831|gb|EDK60896.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
JHU]
gi|160698655|gb|EDP88625.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia mallei
ATCC 10399]
gi|238523056|gb|EEP86497.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia mallei GB8
horse 4]
Length = 644
Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats.
Identities = 93/643 (14%), Positives = 220/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + L+++ I G+ S+ V +V K+ + F +
Sbjct: 1 MLDFFRNHQR-LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G +++ + +++LD L+ L + + L G V +
Sbjct: 60 RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSTSDGAVRQTLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D F + + LA +G+ +Y + L+ + V
Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V +VL + A P++A ++ +++ +K + E I Y+++
Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S+ +++ Y+ N Y + V + K+A A ++ K K
Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ + D KK + +
Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G FG+ I +++KP+ EVK IA +R A++ ++ + +
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V + K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAIDIGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ P+ L+ + V+ + A + E K
Sbjct: 480 NTLIAARVTNHQPSTVPALDAIKDQVRAKVVADEAARLAQQAGEAKLAELRKSKSTAGFA 539
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
++I+R + +S ++ + + + + Y +F+V +
Sbjct: 540 A---------PDKISRT--QAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNS 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + L Q+ + + +A L+++ V +
Sbjct: 589 VVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631
>gi|300721987|ref|YP_003711267.1| peptidyl-prolyl cis/trans isomerase [Xenorhabdus nematophila ATCC
19061]
gi|297628484|emb|CBJ89049.1| peptidyl-prolyl cis-trans isomerase, for periplasmic folding of
outer membrane proteins [Xenorhabdus nematophila ATCC
19061]
Length = 626
Score = 226 bits (575), Expect = 7e-57, Method: Composition-based stats.
Identities = 109/638 (17%), Positives = 246/638 (38%), Gaps = 32/638 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ V KI L ++ + FL+ G++ L S SGS V Q + + ++
Sbjct: 1 MMDNLRTAANGPVLKIVLALIILTFLLTGVTGYLSSESGS-YAAKVNGQTISRAELEQAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
QE ++ +++G + S+ + + ++ LD L++ ++Q+ +GL A +V
Sbjct: 60 LQEKDVLQERLGDQFSALLSDEQQVRQIRRQSLDRLINTVLIEQYANKLGLSASDDQVAE 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSR---LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
EI + F D KF + + LAR I+ + K L ++ + +G
Sbjct: 120 EIRNT-SFLQTDGKFDNKKYQDYLNMLARSNISPDHFAAQVRKELINRQLMQVLMGSEIA 178
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
+ Q + R+V + L + + A ++ L ++ + PE +ISY
Sbjct: 179 LPTEIKQEVMLILQERTVRFATLELKSLEAQQKVTDEELKNYYSANSKRFTVPEKVKISY 238
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
I D ++ K I +S +++ Y+ N KY +PE + + + A L KG
Sbjct: 239 IKMDAVDELKNITVSEADIEKYYKNNLSKYTTPEQKKYSFIQLVSDSAAKSVLDELNKGA 298
Query: 295 KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
F QLA E+ LG + +P+ +L +KG + ++ S Y I
Sbjct: 299 DFSQLAAEKSTDKFSAQKGGDLGWMEESSLPNEL---KSANLTQKGQLSEIVKLSNAYAI 355
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ +IKP ++ +I ++ K+ + + +++ + A + ++ EK
Sbjct: 356 FRLDDIKPQVIKPLADIHAEIDKIVKQEKSVDAFYDLQRKVSDAAAN--DNESLAAAEKA 413
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQI 468
D+ +D ++ + + D + +++ V++
Sbjct: 414 AGYAAVNTDWFDRDHIPADINFSQVVQAIFSGNLIDDKGATGTNSDVISVEGDRAFIVRV 473
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+ P + + +++ + K K +++ ++ +L++ + K G
Sbjct: 474 NDVKPETVQPFGQAKSEMAELLKRQKAEKQLQVESEKLLVALKEGKG--EQALKAAGIQF 531
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF----PIENGLSYVVFKVTNSKVG-- 582
I R ++ F+ P + + V+ ++ G
Sbjct: 532 GQPTVIKRFPQTHQ-----ATDIAFTLPHPKEGKVQYGLAQDEIGNAVLIQLDKVIPGSI 586
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
++ ++ +L+S++ L+ + +
Sbjct: 587 SDEQIKQYQEGYQYQTGNMMLESLMINLRDEADIKFGQ 624
>gi|126452826|ref|YP_001066614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei 1106a]
gi|242317337|ref|ZP_04816353.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei 1106b]
gi|126226468|gb|ABN90008.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei 1106a]
gi|242140576|gb|EES26978.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei 1106b]
Length = 644
Score = 226 bits (574), Expect = 9e-57, Method: Composition-based stats.
Identities = 94/643 (14%), Positives = 221/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + L+++ I G+ S+ V +V K+ + F +
Sbjct: 1 MLDFFRNHQR-LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G +++ + +++LD L+ L + + L A G V +
Sbjct: 60 RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D F + + LA +G+ +Y + L+ + V
Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V +VL + A P++A ++ +++ +K + E I Y+++
Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S+ +++ Y+ N Y + V + K+A A ++ K K
Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ + D KK + +
Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G FG+ I +++KP+ EVK IA +R A++ ++ + +
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V + K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAIDIGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ P+ L+ + V+ + A + E K
Sbjct: 480 NTLIAARVTNHQPSTVPALDAIKDQVRAKVVAGEAARLAQQAGEAKLAELRKSKSTAGFA 539
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
++I+R + +S ++ + + + + Y +F+V +
Sbjct: 540 A---------PDKISRT--QAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNS 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + L Q+ + + +A L+++ V +
Sbjct: 589 VVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631
>gi|53719046|ref|YP_108032.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei K96243]
gi|76809896|ref|YP_333865.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
1710b]
gi|254189176|ref|ZP_04895687.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
Pasteur 52237]
gi|254259824|ref|ZP_04950878.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
1710a]
gi|52209460|emb|CAH35412.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei K96243]
gi|76579349|gb|ABA48824.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
1710b]
gi|157936855|gb|EDO92525.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
Pasteur 52237]
gi|254218513|gb|EET07897.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia pseudomallei
1710a]
Length = 644
Score = 226 bits (574), Expect = 9e-57, Method: Composition-based stats.
Identities = 93/643 (14%), Positives = 221/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + L+++ I G+ S+ V +V K+ + F +
Sbjct: 1 MLDFFRNHQR-LMMFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGTL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G +++ + +++LD L+ L + + L A G V +
Sbjct: 60 RQQVDQARQVLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLSASDGAVRQTLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D F + + LA +G+ +Y + L+ + V
Sbjct: 120 SDPVIASLKKADGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V +VL + A P++A ++ +++ +K + E I Y+++
Sbjct: 180 VARRLTELAEQQREVQPMVLKSADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S+ +++ Y+ N Y + V + K+A A ++ + K
Sbjct: 240 SQAAAAAAAQPSDVDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAAEKAAARAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ + D KK + +
Sbjct: 300 LLAEVKAHPDRFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G FG+ I +++KP+ EVK IA +R A++ ++ + +
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIATDLRQQFAAKAFADNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V + K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAIDIGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ P+ L+ + V+ + A + E K
Sbjct: 480 NTLIAARVTNHQPSTVPALDAIKDQVRAKVVAGEAARLAQQAGEAKLAELRKSKSTAGFA 539
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
++I+R + +S ++ + + + + Y +F+V +
Sbjct: 540 A---------PDKISRT--QAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNS 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + L Q+ + + +A L+++ V +
Sbjct: 589 VVAAAPADDQRLAAAQQQLAQVYAQSETQAYLASLRARSKVKL 631
>gi|88703271|ref|ZP_01100987.1| peptidyl-prolyl cis-trans isomerase D [Congregibacter litoralis
KT71]
gi|88701985|gb|EAQ99088.1| peptidyl-prolyl cis-trans isomerase D [Congregibacter litoralis
KT71]
Length = 622
Score = 226 bits (574), Expect = 1e-56, Method: Composition-based stats.
Identities = 96/636 (15%), Positives = 221/636 (34%), Gaps = 33/636 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++ VAKI + ++ + F I+G+ LFS V V +++ +
Sbjct: 1 MLQDIRANAQGTVAKIIIGLIVISFSIFGIESLLFSGGSDG-VAEVNGEEITPFALQQEV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +G + L ++ L+ L+ + Q D+ L + I
Sbjct: 60 SVQQRRLLSILGENADPALLDQAQLSQQALETLIQREIIKQAAADLELTTSDQALADIIG 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F D +FS D+F S LA G + + ++ + + G + L+
Sbjct: 120 SMGQFQ-IDGQFSPDMFQSALASAGFTPALFRERLSEDVEIGQLRAGIAGSDFTTAAELE 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
A E R V Y+ L A + S+ + ++ + +++ E + Y+ +
Sbjct: 179 LASAIALEGRDVRYVSLPLIDFMASVEVSDEAVEAFYNDNPERFQSEEQLVLEYVEITLD 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-----GKK 295
+ I+ ++ E+E ++++ V ++ E A + + G
Sbjct: 239 RYIEDIDEER--VREEFELVRDEFELATEARVSHILVEGDDEERAARIAEAQAALDAGMS 296
Query: 296 FIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F + A E + LG + + P+ + + G+ + + G +
Sbjct: 297 FAEAAAEYSDDIGSSQFEGDLGYTAGDTFPEA--MEDAVANLAVGERSAPVETEAGTHLL 354
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
V++ + VSF+EV +++ +++ A+ ++ D +RL + +D + ++
Sbjct: 355 LVTDRREGSNVSFEEVAEELEDRIARRDAAAELLSDVERLRDIAFNAADLDAPAEALELT 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
V ++ + + + L ++ +++ E
Sbjct: 415 VQTSDPVTRNQREGLFSRPVLL-----QAAFSEDVLEAGHNSEVLELSPEQFVLLRVAER 469
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P LE V +++ D + A E ++ + +L +G + G
Sbjct: 470 RPPAQVPLESVAGEIE-DLLRDRLAREAAAAEARELLAALDDGNTVEEAANAAGFQWQVE 528
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG----- 582
R ++FS V+ ++ + + ++ G
Sbjct: 529 LGARRDSPT---LPPVVRERLFSMAAPTDGNAVREIVSDDPDATYIVELARVNAGDPEDL 585
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P +E++ + L L+ + V V
Sbjct: 586 PAEEQNSLRQRIAGETGGTLQQQYERSLRERVEVIV 621
>gi|331005209|ref|ZP_08328603.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
IMCC1989]
gi|330420991|gb|EGG95263.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
IMCC1989]
Length = 635
Score = 226 bits (574), Expect = 1e-56, Method: Composition-based stats.
Identities = 98/638 (15%), Positives = 224/638 (35%), Gaps = 26/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R ++ A + +L +P + G+ + + S V + +
Sbjct: 1 MLQGMRNKTKGLTAVFLIGLLTIPLALVGVENLFYGSSTVGEAAEVDGTIITERDVQLAI 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+E + + G + ++ L + ++ +LV + E + + I
Sbjct: 61 SRERQRLQSQFGENLPADFFTDERLRESVMSSLVQRTLMINIAEKGDMTFSDTEIDKTIV 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P+F + F F+ + G + L + V ++ +D
Sbjct: 121 DLPIFQLEG-NFDQQRFLQGVRNLGHTPASFRTLLKNDLLANQMQNAIVASDFITDKEID 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R Y+ L +P S+ ++ ++ K+ Y + E I YI +V
Sbjct: 180 SVVSLSRQTRDFSYVTLPLGELPQEMTVSDEEISTRYDLNKNQYLSTEEVAIEYIELNVA 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----FQSLKKGKK 295
EK I I+++ +Q +Y+ Y + R ++ EA + + L G
Sbjct: 240 SIEKDITITDEAIQQQYDSIVASYNATTQREAAHIMIEGDNEAAQQKIISVKEQLASGAD 299
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA E + +LG + + P+ + +G + +
Sbjct: 300 FSALASEYSDDFGTRDNGGNLGVSAGDGFPEA--FEEALLSLTEGQVSEAVEIDGATHFI 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + +F K I ++++ +A E+ D + LEE ++DE++ I
Sbjct: 358 KLIALTEKTAPTFDSQKIKIESELKRAQAEEQFILDLQTLEELAYNAENLDEVAAELGIS 417
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+I L + + ++ S +++ + V++ E
Sbjct: 418 AIKTGLFTRDNAATVDTILQDSRVVDAAFSEQVVQEKHSSDLLSLSSDKS--VVVKLLEH 475
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P R L+E D+ + + K +++ +A L G + + + G ++ T
Sbjct: 476 KPVRTLTLDEKRGDIVAELQLEKAKAQIAEQARALREALET-GTDITTLAEEKGVAISTQ 534
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE---NGLSYVVFKVTNSKVGP----- 583
+ R + ++ VF +E + YV+ ++ G
Sbjct: 535 KEAQRNTT---GVPEELLASVFEMSHPTDSPVLLERHLDNGDYVIASLSQVTSGNTEGLT 591
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+E+ F S L+ ++ D + A L+++ + ++ +
Sbjct: 592 EEERASFRSSLSSGISGDEYRAWQAQLEAEADINIYRS 629
>gi|103486661|ref|YP_616222.1| hypothetical protein Sala_1173 [Sphingopyxis alaskensis RB2256]
gi|98976738|gb|ABF52889.1| hypothetical protein Sala_1173 [Sphingopyxis alaskensis RB2256]
Length = 673
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 107/639 (16%), Positives = 226/639 (35%), Gaps = 16/639 (2%)
Query: 1 MLEIIRKASRTWVAKIF----LVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSS 55
M+ IR + + K +V++ V F + + ++ F G + V VG +++
Sbjct: 26 MITAIRAMFSSTIGKFLALAFVVLVGVAFALSDVTGNSTFGGIGGANVAKVGGEEIGVGE 85
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ +Q + + G ++L L+ G DQ+ ++G +
Sbjct: 86 LRDRVRQAYDQARRN-QPGLTMAAFVENGGLDQVLGQLIDGLAFDQYATELGFGVSKRLI 144
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
G IA P F G KF VF + L + GI+E + + + + R +
Sbjct: 145 DGRIADLPAFAGVSGKFDQTVFENFLRQNGISEAQLRRDLRQQILLEQLAAPIAQMPRIA 204
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
L + E R + DP +A L ++ + + PE R+
Sbjct: 205 PALAEPYAALLLEQRRGQATFIPASAFAPKGDPGDAALRRFLTQNAAKFTVPER-RVIQY 263
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+++ E+ Y+ N +Y + E R Q++ P+Q A+ ++ G
Sbjct: 264 AMFDRASVPVPAVTDAEIARVYKDNAAQYAATETRRFAQVILPDQAAANRLAAKVRSGAS 323
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
A E G S S S + AK+G+ + G+ + V +
Sbjct: 324 LASAAAEAGLSASTTGDLGQSAYAATTSAAVARAAFAAKRGEVVGPLQTGLGWTVVRVED 383
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ S + +I ++ KA+E + + Y +++ + G S++EI+ K+ ++
Sbjct: 384 VTTRPARSLADASAEIRAELASNKANEAIVDYYNAIQDAVNSGASIEEIATDRKLQIVET 443
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
P + G+ L+ + F + + + +K I A
Sbjct: 444 PAILPNGRAPGQPGFTLAADLAPLVAQAFQVGGEGEGQIATIVENEKFAVFAVKSIIAAA 503
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
++ ++ +W+ + + KA + + GK+ + G ++ I
Sbjct: 504 PPPFAQIRGELLSEWRFAEGQKVARDKARAI-ARAVEGGKSLNEAVAAAGPNIGNVQAIG 562
Query: 536 RMDNENKFFGYDG---ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD---- 588
E G ++ +FS VK I ++V + + + +
Sbjct: 563 GRRAELGANGERVPPELALLFSMAEGSVKTLEIPGNRGWMVIALDEVRRPDPKAIEPERV 622
Query: 589 -KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L +LL+ + A + + VT++ L+ +
Sbjct: 623 AAIARPLAPAFGNELLEQLAAEARRRVGVTINKGLVDQL 661
>gi|254785729|ref|YP_003073158.1| peptidyl-prolyl cis-trans isomerase [Teredinibacter turnerae T7901]
gi|237683903|gb|ACR11167.1| putative PPIC-type PPIASE domain protein, peptidyl-prolyl cis-trans
isomerase [Teredinibacter turnerae T7901]
Length = 624
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 93/633 (14%), Positives = 209/633 (33%), Gaps = 27/633 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVL-FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML+ +R + + + +++ +P +I G+ + + V + +
Sbjct: 3 MLQSVRDNLKGTIVSVIVILFFILPMVITGVGSSFLGSVAGTDAAVVDGRSITKKELSRE 62
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ + + G +++ + L + +L+ L A + E G+ + G I
Sbjct: 63 IYMQKQRLLAQQGVDPSADYLKDENLAQPVLERLTRKAAVLAAAEKGGMAVSEKSINGAI 122
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
F D KFS + S LAR G+ Y + + + +
Sbjct: 123 VGQEEFKV-DGKFSSQQYRSLLARVGLTPAAYKAATAEEMMLGQLNKGLELSSFVTEKEK 181
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ E RS + + + + ++A + +++ + +R PE + YI V
Sbjct: 182 SEIIAIINEKRSFFTVKIPADDLADSIEVTDAEIAAYYQANEAEFREPEKLSVDYIELSV 241
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK--EADEAFQSLKKGKKFI 297
+ + + +++++YE+ E + + TV ++ + E L G +F
Sbjct: 242 NSIAATVTVDEADVRSQYEQEAESFDATPELTVAHILLEEDSSAKLTEVQAKLAAGDEFA 301
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+A+ LG P+ + + G+ + + G V
Sbjct: 302 DVAKAYSDDAGSRDQGGELGVLVAGAFPEAFESAARELGE--GEVSGPVKTDSGTHFIKV 359
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
SF+ K I +++ KA + ++L+E + ++ I
Sbjct: 360 LKKDVPEVPSFESRKAAIERSLKVAKAEGIYLSEMEKLDELTFGAPDLSGAAKELGIEVK 419
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
G VA P F D + + L + V+ P
Sbjct: 420 TTQPFQRNT----GLGVAGNPEVRNAAFGDEVLIDNRN-SQVIELAGNRALVVRKNTHSP 474
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+ LEEV V K + + KA + E K ++ + ++ G +
Sbjct: 475 EHIKPLEEVKEQVVSKLTESKLNDLLEEKAETFIAEA-KSSEDLNALAESSGYAYAMFED 533
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN---GLSYVVFKVTNSKVGPVQEKDK- 589
++R D + + VFS P+ + + Y V V G + +
Sbjct: 534 VSRSDPVSD---PATRNTVFSMPLIEGETAFDASPVRDGGYQVVGVVKKSAGTADDMEPT 590
Query: 590 ----FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ L++ ++ + + + + + +
Sbjct: 591 QVAGLATQLSRENSRFEGSAFESEVVANADIKI 623
>gi|152995753|ref|YP_001340588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
MWYL1]
gi|150836677|gb|ABR70653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
MWYL1]
Length = 607
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 108/635 (17%), Positives = 226/635 (35%), Gaps = 47/635 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ V KI + + V F ++G+ + S + S TV V + + +
Sbjct: 1 MLQDIRDKSQGIVVKIIVGFIVVTFALFGVDALVTSFNSSDTVAEVDGVDITRTQMLQGA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + +G VN L ++ LD LV L + +GL +V +
Sbjct: 61 ETQRRQLISMMGGQVNPALLEDNLLQRRALDELVQRVVLANQAKGLGLGVSDAQVNAYLL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++ F + +F + +++ + G + + + + G +D
Sbjct: 121 QAEQFQT-NGQFDQNKYLNFIRSLGFTPLAFKERIKQDVLIQQPRNAIAGSEFVLPYQVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R+ DY+ + S+ L ++E K+N++ PE +++Y++
Sbjct: 180 SVSKLQSQERTYDYVSFSLADESENTSVSDDELKAYYEANKENFKTPEQVKVNYVVISSS 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-------LKKG 293
+ K++I++ ELQ Y+ + E L+ + + DEA + LK G
Sbjct: 240 DFYGKVKITDAELQDAYQASISVLAQEERSASHILIETSDRSDDEAKKRLEEVEAKLKAG 299
Query: 294 KKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
KF LA + +LG K + + D++FS+ K + + G +GY
Sbjct: 300 AKFADLAAKYSDDIGSNKDGGNLGYVEKGIM-GSAFDDTLFSMKKGEVKS--VKGQYGYH 356
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + +I SF K+++ ++R KA + + ++ + + +D I++
Sbjct: 357 LIKLDDISKPDVPSFASKKEELLQKLREDKARDALLTAHEDITDLAYASDKLDAIAKEYG 416
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ + G + A+ + + + + + L D + + +
Sbjct: 417 VDVLQSAYFGRDGGSDEITSSPAVIAAAFGVSVL----EDGQNSNLIELGDDQVVVLHLN 472
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ P + EE V K E + +KA +
Sbjct: 473 DHKPEAFQSYEETKEQVASIVVQNKAVESLRAKAEK--------------AKSASNTKWT 518
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVG---- 582
+ R + S FS P V + + ++ G
Sbjct: 519 SVKDAKRGQ-------DEMTSLAFSLPHPEGKPVIEVKGLSNGDLALIRLNKVDAGNATV 571
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P +K + YL Q YLK++ +
Sbjct: 572 PDDQKLAYERYLNQTQVTLSTQGQQDYLKNKAKIE 606
>gi|259418802|ref|ZP_05742719.1| putative peptidyl-prolyl cis-trans isomerse D [Silicibacter sp.
TrichCH4B]
gi|259345024|gb|EEW56878.1| putative peptidyl-prolyl cis-trans isomerse D [Silicibacter sp.
TrichCH4B]
Length = 611
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 130/629 (20%), Positives = 260/629 (41%), Gaps = 30/629 (4%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
++ S+T+V I + +LFV +G A+ + T+ +VG V + + +QE
Sbjct: 1 MKNLSKTFV-WILMGLLFVGLAGFG---AINVSGTTRTLATVGDATVSVDDYARALQQEQ 56
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
I + G + + S+G+D+ +L LV+ A LD + ++GL + EI +
Sbjct: 57 RAIQAQSGRSIPLSQLISMGVDRGVLSGLVASAALDNELGELGLSVGDEVLLKEITQISA 116
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
F G D FS D + L G++E ++ + +RT + G GG R +L +
Sbjct: 117 FQGSDGNFSRDNYRFALDNAGLSEADFEEDMRSETARTLLQGAITGGTRMPAVLGETLTD 176
Query: 185 FYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+ RS Y+ L+ V +P+ L ++E + +++ PE K I+Y+
Sbjct: 177 YIGARRSFAYVRLSENDVILTAVEPTEDELKSFYETHIEDFTLPETKVITYVALRPDALV 236
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAFQSLKKGKKFIQLAEE 302
++E+ L+A YE+ ++ PE R VEQLVFPN+ A Q G F L EE
Sbjct: 237 DEVEVDETALRALYEERDAEFNVPERRLVEQLVFPNEDAAATAKAQLDVGGTTFETLVEE 296
Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
+ +LSDI +G + + + A+ GD + FG + V+ + +
Sbjct: 297 RELTLSDIDMGDVAIDTLGTAG---DAVFAAEVGDVVGPLPSEFGPALYRVNGVLEANFT 353
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
SF++ + ++ + +A ++ + +++ LA G +++++++ E + L +D+
Sbjct: 354 SFEDALPTLREELALDRARRVIETRSEGIDDALAGGATLEDLAKEEN--GMVLGQLDWTA 411
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
L DGS +++ E + R + E+
Sbjct: 412 DTTDDI------AAYDTFRNAAEAITIEDFPAVDYLEDGSLFALRLDEVLAPRPQPFEDA 465
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
T V + +K + A+ ++ +A+Q+ F + ++ + R ++
Sbjct: 466 RTAVTEAFKGDRIAKALAEQADQIKAATESNDGQFPE-----DHEVVEQTGLTRTAYLDQ 520
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-----DKFISYLTQM 597
D ++QVF V V+ G VV ++ + L Q
Sbjct: 521 T-PVDLLNQVFEMEVGEVRVVSDAEGT--VVVRLDETLPPDDGNDMQFLTQALNEQLNQS 577
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ ++ + ++S+ V+ +
Sbjct: 578 LSNEIFQIYLQAVQSRARPQVNQQAVNSV 606
>gi|152978448|ref|YP_001344077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
succinogenes 130Z]
gi|150840171|gb|ABR74142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
succinogenes 130Z]
Length = 624
Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats.
Identities = 101/636 (15%), Positives = 238/636 (37%), Gaps = 30/636 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E + A+ WV+K L + V F++ G+ L S S SS V V +++ +F +
Sbjct: 3 MEKLHHAANNWVSKAILGAIAVSFVVSGMYGYLGSSSDSSAV-KVNGEEISQQNFQQQYN 61
Query: 62 QELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
E + Q++G + + GL + +L+ L+ L Q+ +++ + ++ E
Sbjct: 62 NEFQRLEQQLGPQFAALSDTPEFTAGLRQTVLNRLIDQELLRQYGDELNIAVSDEQIKRE 121
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I R+P F D KFS++ + L ++ Y + + L +
Sbjct: 122 IVRTPEFQV-DGKFSNETYQLFLRNNNLSSDTYAQYLREALRLAQLQSALTDTAFLLPAN 180
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
+ + +F++R+V L A + + ++ K + PE ++ Y+
Sbjct: 181 QEAFAKGFFQSRAVRLAHLPLAAEIAKQTVTEEEIQNYYNSNKSAFTVPELIKVQYLDLT 240
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
EK +++++ E+Q Y+ +K + + + + N+KEA +A+++L+KG F
Sbjct: 241 QAAAEKTVKVTDVEIQQYYQDHKADFTTKGQERLAHIQLANEKEALDAYEALQKGADFAT 300
Query: 299 LAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+E+ + LG + +P + + + G ++ ++ + I V
Sbjct: 301 LAKEKSNDKVSAVNGGDLGWLNTGDLPKEFEDAAT--ILEVGHYSTPVNVDGQFHIIQVL 358
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
K S + ++VK+ I +R + K+ E ++ K ++
Sbjct: 359 ERKDSALLPLEQVKERITQAIRQDLVGNQFYAMEKQAAEK--AFEDRTSLAAAAKAAGVE 416
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ D+ + G + + + + V++ +
Sbjct: 417 IKETDYFPR--NGVPAELNFPSVVNAMFDGDVSQGNVNSEPMNVGEQHSIVVRVLDHKAE 474
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R LE+ ++ K K + ++A +V + + I +
Sbjct: 475 GTRSLEDAHQEIADFLKRRKAETAMLAQAENIVKDLDADKPLPAGINFGAEEQWVYAENK 534
Query: 535 NRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVGPVQE--KDK 589
+ +F+ N ++ + + G V + +
Sbjct: 535 ----------DPALNNIIFTMQPKENGTAYKAAKANNGDVMIVALDKVEDGQVDNALRQR 584
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
F + + Q +D ++ L+++ + V+++ I++
Sbjct: 585 FDAQVLQDKMRDAQLHLLQSLRAKAKIEVNESFIKQ 620
>gi|190573026|ref|YP_001970871.1| putative peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
maltophilia K279a]
gi|190010948|emb|CAQ44557.1| putative peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
maltophilia K279a]
Length = 651
Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats.
Identities = 98/662 (14%), Positives = 216/662 (32%), Gaps = 50/662 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+ + L +L +PFL + ++ G+ V V
Sbjct: 1 MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++QE Q+ G + S +LD L+ +
Sbjct: 60 PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESTENKLAVLDQLIDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA--REGINEKEYIDHYTKM 158
E G+ G V IA P F + KF+ + + LA ++ + +
Sbjct: 120 LVGEQAGVVIGDGAVREYIATIPAFLDSNGKFNENNYRLALAGGNPPRTPTQFQELVRES 179
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ L A ++A + QW++
Sbjct: 180 LQQSVIPSGLQNSGFVTQSETERLLKLLGETRDVELAALPEVPADT-APVTDAQIKQWYD 238
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-- 276
+ ++R E + Y+ + L+ YE K K+ +PE R ++
Sbjct: 239 SHGKDFRQAESVSLEYVEINGANLPAPTAADEATLRKRYEDEKAKFTTPEQRQASHILIT 298
Query: 277 ------FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
N+ A+ +E+ G LG + + +
Sbjct: 299 GDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKGQGGDLGWVERGAMVKP--FEDAL 356
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
AK GD + FGY I V+ ++ SF+EV+ +A + E R
Sbjct: 357 FAAKAGDVIGPVKTEFGYHIIKVAAVRGGQGKSFEEVRDTLAAEQLKADGERGFNELAGR 416
Query: 391 LEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
L + + + ++ + L + A + + V +D
Sbjct: 417 LVDAINKSPSDLAAAAKEVNLPLQTLGPITRATASGIAADPGVL---RAAFSDVLVQDGT 473
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
S + + +++ P + L++ V + + + A+ ++ +
Sbjct: 474 ASDPIALGGATNHSVVIRVAAHTPEQAMPLDKAREQVIAAIRADRQRQASDKAADAVLAK 533
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIE 566
K G + + + L + R + +FS PV ++
Sbjct: 534 L-KAGATLQSLAASEKLQLSPMPGLPRSQPVPT---PEINRAIFSAPVPADGKPSYGKVD 589
Query: 567 NGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
++F V G +++ + L+Q+ + + ++ ++ + +
Sbjct: 590 VNGHALLFAVNKVNPGDVKEVTAEQQKQLKDQLSQIDGMAAAKAYVEAMRKKFVIQTTEA 649
Query: 622 LI 623
+
Sbjct: 650 NL 651
>gi|194364618|ref|YP_002027228.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
maltophilia R551-3]
gi|194347422|gb|ACF50545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stenotrophomonas
maltophilia R551-3]
Length = 651
Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats.
Identities = 99/662 (14%), Positives = 215/662 (32%), Gaps = 50/662 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+ + L +L +PFL + ++ G+ V V
Sbjct: 1 MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++QE Q+ G + S +LD L+ +
Sbjct: 60 PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESNESKMAVLDQLIDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA--REGINEKEYIDHYTKM 158
E G+ G V I P F + KF+ + + LA ++ + +
Sbjct: 120 LVGEQAGVVIGDGAVREYITTIPAFLDSNGKFNENNYRLALAGGNPPRTPTQFQELVRES 179
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ L A ++A + QW++
Sbjct: 180 LQQSVIPSGLQNSGFVTQAETERLLKLLGETRDVELAALPEVPADT-APVTDAQIKQWYD 238
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-- 276
+ ++R E + Y+ + L+ YE K K+ SPE R ++
Sbjct: 239 SHGKDFRQAESVSLEYVEINGGNLPAPTAADEATLRKRYEDEKAKFTSPEQRQASHILLT 298
Query: 277 ------FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
N+ A+ +E+ G LG + + +
Sbjct: 299 GDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKEQGGDLGWVERGAMVKP--FEDAL 356
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
AK GD + FGY I V+ ++ SF+EV+ +A + E R
Sbjct: 357 FAAKAGDVIGPVKTDFGYHIIKVAAVRGGEGKSFEEVRDTLAAEQLKADGERGFNELAGR 416
Query: 391 LEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
L + + + ++ + L + A + A + V +D
Sbjct: 417 LVDAINKSPSDLAAAAKEVNLPLQTLGPITRATASGIATDPAVL---RAAFSDVLVQDGT 473
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
S + + +++ P + L++ V + + + A+ ++ +
Sbjct: 474 ASDPIALGGATNHSVVIRVAAHTPEQAMPLDKAREQVIAAIRADRQRQASDKAADAVLAK 533
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP---VEMVKCFPIE 566
K G + + + L + R + +FS P ++
Sbjct: 534 L-KAGATLQSLAASEKLQLSPMPGLPRSQPVPT---PEINRAIFSAPVPAEGKPSYGKVD 589
Query: 567 NGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
++F V G +++ + L+Q+ + I ++ ++ + +
Sbjct: 590 VNGHALLFAVNKVNPGDIKEVTAEQQKQLKDQLSQIDGMAAAKAYIEAMRKKFVIQTTEA 649
Query: 622 LI 623
+
Sbjct: 650 NL 651
>gi|285017392|ref|YP_003375103.1| peptidylprolyl isomerase (rotamase d) protein [Xanthomonas
albilineans GPE PC73]
gi|283472610|emb|CBA15115.1| probable peptidylprolyl isomerase (rotamase d) protein [Xanthomonas
albilineans]
Length = 661
Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats.
Identities = 107/676 (15%), Positives = 227/676 (33%), Gaps = 68/676 (10%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R+ + W+A + +L +PFL + G++ V V
Sbjct: 1 MLQTLREKTSGWIATAIIGLLMIPFLFV-IDTGYLGGVGANNVAKVQAPPSWWLSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S+ +K+LD L+ +
Sbjct: 60 PVSLLWQHHEISTEQFRMGFEQARQQARQQQGEAFDPREFESIDNKRKVLDQLIDEQVVK 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
E G+ V IA P F + KF + + LA +
Sbjct: 120 LAAEQAGVVIGDASVRDYIASIPAFQN-NGKFDPERYRLALASGTPPRTPAMFQQLVRDA 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + S ++ + E R V+ +L A S+A + QW++
Sbjct: 179 LQQSVIPTGLMESAFGSKQETERLMKMLGETRDVELAMLPEMPADT-APVSDAQVQQWYD 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ +++ PE I Y+ + + L+ YE+ K ++ P+ R ++
Sbjct: 238 THTSDFKQPETVSIEYVELNAAKLPASKPADEATLRKRYEEEKARFVEPDQRLASHILIS 297
Query: 279 NQKEADEA-----------FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
K+A ++ + G F LA LG K +
Sbjct: 298 AGKDAASQKAAEAKAVKLAAEAKRPGADFAALARANSDDPGSKNAGGDLGWVEKGVMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K G+ + FGY + + +K SF++V+ +A++ +
Sbjct: 358 --FEDALFAMKPGEIVGPVKSEFGYHVIQLREVKGGKGKSFEQVRDQLASEQLQADNEKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T + ++ + L A + A +
Sbjct: 416 LSALSGKLVDEVYKNPTELASAAKDVGLPVQTLGPFTRASASGIAAQPAVL-----RAAF 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + L + +++ + P + L +V V +TA+ ++K
Sbjct: 471 SDALVQDGTVSDPINLGPNHSVMIRVTQHQPEQILPLAKVHEQVIAAVHADRTAKAAAAK 530
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE---- 558
A+ L++ K G+ + + + ++R + + +FS P
Sbjct: 531 ADALLVRLRK-GETLQALAGPEKLQINPMPALSR----SPMPSPEANRTIFSAPRPVAGK 585
Query: 559 ------MVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVI 607
+ P G Y +F VT G P +++ F L Q+ + +
Sbjct: 586 PSFGKVALPAAPGAGGKRYALFAVTKVMPGDLSKVPAEQQTTFKQQLAQIEGAADAKAYV 645
Query: 608 AYLKSQYSVTVHDNLI 623
++ +Y V+V + +
Sbjct: 646 DAMRKRYKVSVQEAQL 661
>gi|312796419|ref|YP_004029341.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI
454]
gi|312168194|emb|CBW75197.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia
rhizoxinica HKI 454]
Length = 638
Score = 225 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 98/643 (15%), Positives = 224/643 (34%), Gaps = 39/643 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + + ++++ G+ S+ V SV +K+ + + +
Sbjct: 1 MLDFFRNHKR-LMMFLLVILIAPGLGFVGVQGFRNFFDDSADVASVAGRKITRAEYEGAM 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV---WG 117
+++L Q +G +++ + + + ILD+LV L + ED+ L A V
Sbjct: 60 REQLDRARQVLGANFDAKAIDTPEMRRAILDSLVQQRVLAKATEDLHLSASDQAVLRAEQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I D + D + LA +G+ + + + L+ +
Sbjct: 120 SIPAIAALRKPDGTYDVDQYKQLLAMQGMTPELFDERVRYQLASRQLPDGIQASAFAPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L Q ++R V ++L PS+ L Q+++ + D + PE + Y++
Sbjct: 180 LAQQLASLSEQSREVQGLMLRATDYADKVQPSDVQLKQYYDAHHDAFAMPERASVEYLML 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ + S EL+ Y+ + K+ +P ++ A +A + + K
Sbjct: 240 SADALAQRAQPSEAELKKYYDDHAAKFKTPGEVRASHILIAVAASASQAERDKARQKAES 299
Query: 298 QLAE-----------------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA+ + G LG F + + KK +
Sbjct: 300 ILAQVTAHPEQFAKLAQQNSDDPGSKNKGGDLGFFGPGMMVKPFSDAA--FKLKKDQISS 357
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ FGY I V++IKP T F EVK IA +++ +A++ E + + +
Sbjct: 358 IVQSDFGYHIIKVTDIKPEQTKPFDEVKATIATELKAEQATKAYVEQAEAFTNMVYEQSD 417
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I + G K + + +
Sbjct: 418 SLKPAADKFKLTIQTATLMREGNPALPLTRPLNNPKLLAAVFADDSVKSKHNTPAIDVGN 477
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + PA + + V V++ +A++ + + E K
Sbjct: 478 NTLVSARVVDYKPASVQPYDTVAAQVRQKVVAQLSADKARQQGEAKLAEVQKSEST---- 533
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
A ++ R D ++ +F + + + + Y +++V
Sbjct: 534 -----AGFSAVTKVTRADTR--GVPPQAVAAIFKVDPQKLPAYVGVDLGDAGYAIYRVNA 586
Query: 579 SKVGPVQEKDKFIS---YLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + + Q++ S + L+++ V +
Sbjct: 587 VDMPSSIDAQRLSGAQLQIGQVLGDAEWASYVDALRARSRVKL 629
>gi|315634906|ref|ZP_07890188.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
33393]
gi|315476458|gb|EFU67208.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
33393]
Length = 615
Score = 225 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 103/630 (16%), Positives = 231/630 (36%), Gaps = 25/630 (3%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E + AS W +K + V F+I ++ L++ ++ V +++ +F N +
Sbjct: 3 MEKLHGASTNWASKFLFGFITVTFVISSMAGYLYTRV-DNSAAKVNGEEISQQAFQNQYN 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
++ + A+ L +++L +L+ L Q+ ++ L R+ EI
Sbjct: 62 IASRNLTPQEIDSP----AQVANLKRQVLASLIDQELLRQYANELKLGVSDARIKQEIVT 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+P F + KF + ++ L GI+ + Y + + L + ++
Sbjct: 118 TPTFQN-NGKFDNTLYQQTLQNNGISAETYAGYVREALRLEQLQSGLGTTTFSVPAQQEK 176
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ +F++R + L+ + A + S+ + +++ +K + PE ++ Y+
Sbjct: 177 LTKLFFQSRQIRLANLSLANEIAKQEVSDEEIQAYYDAHKAEFTIPETVKVQYLDLSGAA 236
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
E I I++ E+ Y+ NK ++ + + + + +++A E +Q L+ G F LA+
Sbjct: 237 MENNINITDVEIAQYYQDNKPQFTTQGQQRLAHIQVKTEQQAQELYQQLQNGANFADLAK 296
Query: 302 EQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ L S P V + G ++ ++ Y I V K
Sbjct: 297 NHSIDPTSAERGGDLSWVSAGEFPKVFEDAAN--ALAVGQYSQPVNLDNHYHIILVEERK 354
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ VK IA Q+R + + KR+ E S + + +
Sbjct: 355 EPQLQPLESVKAQIAAQIRQNLVNTQFYSIEKRVAEKAFEDPSSLNAAAEVG--GVKVQE 412
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ +D E+ + S + + + + V++ + P +
Sbjct: 413 TAYFSRDDIPAELNYPNVVSAVFDS--DLSQGGSNSEPMNVGEQHSVVVRVLDHKPQSIK 470
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
L+E D+ K K V ++A Q+V S+ G
Sbjct: 471 TLDEAKADITAHLKHQKAEAVVLAQAEQIVQNLSEGK-------SVEGVKFSAEQTWVFA 523
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYLT 595
+N++ S + V+ + G QE+ +F +
Sbjct: 524 ENKDPVLNNTVFSMAKPEEGKTTYKAASNANGDVVIIALDKVVDGKLTEQEQKQFAVQIE 583
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
Q+ L +S++ L+++ + ++D+ I +
Sbjct: 584 QLSQVSLQNSLLNALRAKAKIKINDSFINQ 613
>gi|254465313|ref|ZP_05078724.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales
bacterium Y4I]
gi|206686221|gb|EDZ46703.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales
bacterium Y4I]
Length = 613
Score = 225 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 124/633 (19%), Positives = 250/633 (39%), Gaps = 32/633 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M ++K S+T+V I + +L V +G A+ S SS+V VG ++V S++
Sbjct: 1 MAAGMKKLSKTFV-WILMGMLIVGLAGFG---AVNFTSSSSSVAQVGDEEVSIGSYVREL 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++E + + G V + + G+D+ +L L+S A LD +GL + E++
Sbjct: 57 QREQRALQAQTGQAVTMAQMSAFGMDRMVLGRLISLAALDHESRQLGLSIGDDNLIEELS 116
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F F + + L G+ EKE+ D + +RT V + G + L +
Sbjct: 117 AIDAFKNVSGGFDREAYRFALRNAGLTEKEFEDDLRREAARTMVQNAMLSGTKMPATLTE 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
F RS Y+ LN + A+ PS+A L ++E +D + PE K I+Y
Sbjct: 177 TLTSFIGARRSFSYVQLNAADIALTAEAPSDADLQAFYEANQDQFMLPETKVITYAALRP 236
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAFQSLKKGKKFIQ 298
+IE+ +LQ +E ++Y PE R VE+LVF ++ A Q G F
Sbjct: 237 STLLDEIEVDEAQLQRLFEDRADQYQVPERRLVERLVFGSEDAAASAKAQLETGGATFES 296
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
L E +G +L D +G + + + GD + G + V+
Sbjct: 297 LVEARGLTLQDTDMGDVAMGDLGAAGT---EVFATQVGDVAGPLPSDLGPALYRVNGRLE 353
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ +F++ K ++ ++ +A V+ + +++ LA G +++E++ + +
Sbjct: 354 AQITTFEDAKPELIEELASDRARRLVESQAEGIDDMLAGGATLEELATESGLELAQINWT 413
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
+ + + L DGS +++ + +P R
Sbjct: 414 EDTSDGI---------AAYEAFRTAAAAVTAEDFPEAGFLEDGSLFALRLDDVLPERPEP 464
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
+ V W+ + A+ + + ++ + + G GA + T + R
Sbjct: 465 FADAKDKVLAAWQADRLAKALKDQGEAVLAQAEQAGGFAE------GADVKTEPGLTRTA 518
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-----DKFISY 593
+ +SQVF+ + +++ S VV ++ + +
Sbjct: 519 YID-TVPEPLVSQVFTMETGDFRL--VQDADSAVVVRLDAILPPEQSDDMTLLAQALQAQ 575
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L Q + ++L ++ + ++++ V +
Sbjct: 576 LDQSLAEELFEAYVQDVQARAEPRVDQQALNAA 608
>gi|167836273|ref|ZP_02463156.1| putative peptidyl-prolyl cis-trans isomerse D [Burkholderia
thailandensis MSMB43]
Length = 644
Score = 225 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 92/643 (14%), Positives = 220/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + L+++ I G+ ++ V +V K+ + F
Sbjct: 1 MLDFFRNHQR-LMMFFLLLIVLPGLGIVGIQGFRGFFDENANVAAVNGHKITRAEFDGML 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G +++ + +++LD L+ L + + L A G V +
Sbjct: 60 RQQVDQARQMLGAQFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D F + + LA +G+ +Y + L+ + V
Sbjct: 120 SDPVIASLKKPDGSFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVASAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V +VL A P++A ++ +++ +K + E I Y+++
Sbjct: 180 IARRLTELAEQQREVQPMVLKPADYAAKVQPTDAQISAYYDAHKQAFATRETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S+ +++ Y+ N Y + V + K+A A ++ K K
Sbjct: 240 SQAAAVAAAQPSDIDIKKYYDDNIAHYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ + D KK + +
Sbjct: 300 LLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKDEVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G FG+ I +++KP+ EVK IA ++ A++ ++ + +
Sbjct: 360 VVQGDFGFHILKATDVKPAVVKPLAEVKDSIAADLKQQFAAKAFADNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V + K + + + +
Sbjct: 420 SLQPAADKYKLTIQTAAVSPQPNPALPPDSPLNNAKFLAAVFAADSVKNGNNTQAIDVGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ P+ L+ + V+ + A + E K
Sbjct: 480 NTLIAARVTNHQPSAVPALDAIKDRVRAKVVADEAARLAKQDGEAKLAELRKSKSTAGFA 539
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
++I+R + +S ++ + + + + Y +F+V +
Sbjct: 540 A---------ADKISRT--QAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNS 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + L Q+ + ++ +A L+++ V +
Sbjct: 589 VVAAAPADDQRLAAAQQQLAQVYAQSETEAYLASLRARSQVKL 631
>gi|167855404|ref|ZP_02478170.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis 29755]
gi|167853470|gb|EDS24718.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis 29755]
Length = 624
Score = 225 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 98/637 (15%), Positives = 214/637 (33%), Gaps = 28/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + S WV KI ++ + F++ G+ L + ++V V +++ F +
Sbjct: 1 MIEKMHEKSGGWVFKIIFALVSLSFVLGGIGGGLMAT--DNSVAKVNGEEISQQVFSRAK 58
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
Q+ +++ ++G + + IL+ LV L Q+ + + ++ ++
Sbjct: 59 NQQQNILNAQLGERFWDLMDNPIYVKQFHESILNGLVDDELLRQYAKSLKIDVSADQIKS 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI SP F +D KF+++++ L G+ Y + + + V
Sbjct: 119 EIVNSPAFQ-QDGKFNNNLYQQALRNNGLTADGYAAIVYEGMLFAQIQEAIVNSSFTVPA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V + S + ++E K N+ PE + YI
Sbjct: 178 QQELLAKLLLQKRQVRLATYSIAKEVNNQTASTEEMQAYYEANKANFVNPEKLTVEYISI 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + KI+++N+++ Y+ NK KY + + + + EA+E Q+L KG+ F
Sbjct: 238 EPKDLANKIQVTNEQIDTYYQTNKAKYTTKGEAKIAHIQVATEAEANEIVQALAKGEDFA 297
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
QLA+ + + LG P + G + I + I V
Sbjct: 298 QLAKAKSQDKLSAAQGGDLGWAKAGVFPKAFEDAANM--LDAGKTSQPIKVDNAFHIIKV 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412
V ++VK I + +R + + + S++ +++ ++
Sbjct: 356 LERNVETVVPLEKVKAQITDTIRNELLLTEYSNITREMANVAFENSGSLEAVAKVANVLV 415
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + M+V++
Sbjct: 416 HKTDAFTRETVPAELDNEKVLRVLFD--SEVRQNGQNSEAIDLSDATNTKTMFVRVSHYQ 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ +E + V++ K K + + KA V +K G +
Sbjct: 474 AENVQTFDEAKSAVEQAVKQQKALKVLEEKATTQVAALNKGETVEVAFGASEELVF---- 529
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
+ + VFS VV + G E
Sbjct: 530 ------AQAQITEPALAQAVFSMAKPAEKPTYQTARNTNGDVVVIALDKVSDGTADEFKP 583
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ Q L + ++ L+ + + V+ + + +
Sbjct: 584 LQAQFNQAERVVLRNDLLKDLRERAKIEVNQDFLDQL 620
>gi|92114164|ref|YP_574092.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
salexigens DSM 3043]
gi|91797254|gb|ABE59393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
salexigens DSM 3043]
Length = 602
Score = 225 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 99/629 (15%), Positives = 224/629 (35%), Gaps = 41/629 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINS 59
ML+ IR+ S+ WVAK+ + + V F ++G + SGS + +V + + +
Sbjct: 1 MLQRIREGSQGWVAKMIVGAIIVTFALFGAESLVGVFTSGSDDIATVNGEPIKRQAVELQ 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
++ + V E+ R L +++D +++ LDQ+ E+ G+ ++ I
Sbjct: 61 VQRGIRS------GQVPPEQERE--LRAQVIDQMITTELLDQYAEEGGMHLSDAQIDQLI 112
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F + FS ++F +RLA G + + + R +
Sbjct: 113 VSRPEFQDSEGNFSQELFSNRLASAGYTPLSFRRELRRDMKRQQLQQGVALSTFVLPGEA 172
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
++ + + R Y L + A + + + + ++E ++D Y+ PE +++Y++ +
Sbjct: 173 ERLQALQNQTRDFRYASLTADDLEAPVEVTESDMQAYYEAHQDQYQRPEQVKVAYVVLNQ 232
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-----EQLVFPNQKEADEAFQSLKKGK 294
+ + +++ +L+ Y +E + E+ +EA L +G
Sbjct: 233 QDVAQDVDVDEQQLRDAYAAEREDAPREVAHVMVDYGDERSRDEAMARIEEAQGQLAEGA 292
Query: 295 KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
F +A E +LG ++ + D + +G + V+ G +
Sbjct: 293 DFADVAAEYSDDATTANKGGNLGVINRGFFGDAFDDAA--FSLDEGQVSSVVDSGDGLHL 350
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
V++I SF E + ++A Q+R+ + + E ++LE+ + ++ +
Sbjct: 351 IKVTDIDMP---SFDEQRDELAEQVRLDNSRDAFNERAQQLEDRSYAADDLQSVADELGL 407
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
V + E + + L D +++ +
Sbjct: 408 DVQTSDWVSADSAEGVLAEPGM-----MDAAFSEDVLENGYNSDVIELDDQRRAVLRVVD 462
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
A L+EV V++ + VKT E + ++A +LV +
Sbjct: 463 HREATTLSLDEVSERVREATREVKTREALEARAERLVASLRNG--------DAVSLDWQQ 514
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKD 588
+ R + Q F P + ++T + G +E
Sbjct: 515 VDDATRRG---DAAPEPVLRQAFRLPHPNDGQTYGHAMTDAGVAIIELTQVRDGDAEEAG 571
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + + + L+ +
Sbjct: 572 NSARMAERLRAQAAIQGLTESLREDAEIE 600
>gi|261868689|ref|YP_003256611.1| peptidyl-prolyl cis-trans isomerase D [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261414021|gb|ACX83392.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Aggregatibacter actinomycetemcomitans D11S-1]
Length = 615
Score = 225 bits (571), Expect = 3e-56, Method: Composition-based stats.
Identities = 113/634 (17%), Positives = 234/634 (36%), Gaps = 33/634 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E + AS W +K + V F+I ++ L+S S+ V +++ +F N +
Sbjct: 3 MEKLHGASNNWASKFLFGFITVTFVISSMAGYLYSRI-DSSAAKVNGEEISQQAFQNQYN 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+S + L +++L +L+ L Q+++D+ L R+ EI
Sbjct: 62 IASQNLSPQEADSPT----VVANLKRQVLSSLIDQELLRQYVKDLKLGVSDERIKQEIVT 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+P F + KF + ++ L GI+ + Y + + L + + +
Sbjct: 118 TPSFQN-NGKFDNVLYQQLLQSNGISAETYAGYVREALHLEQLQSGLGITAFTVPVQQEA 176
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ +F+ R V L+ A S + +++ +K ++ PE ++ Y+
Sbjct: 177 LTKLFFQRRDVRLATLSLADEIAKQTVSAEEIQAYYDAHKADFTLPESVKVQYLDLSGAN 236
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
EK I ISN E+ Y+ NK ++ + + + + +++A + +Q L+ G F LA+
Sbjct: 237 MEKNINISNVEIAQYYQDNKSQFMTQGQQRLAHIEVKTEQQAQDLYQQLQNGADFATLAK 296
Query: 302 EQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L S P V + G F+ + Y I V K
Sbjct: 297 NHSIDPISAEKGGDLSWVSAGEFPKVFEDAAN--ALDVGKFSQPVKLDNSYHIILVEERK 354
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
S + + V+ I Q+R + + KR+ E +S + + +
Sbjct: 355 DSAVLPLERVRPQIVAQIRQNLVNNQFFSVEKRVAEKAFEDSSSLNAAAEAG--GVKVQE 412
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ + + + S +++ D + +++ E +
Sbjct: 413 TGYFSRKDIPAALNYPNVVSAIFDSDIS--QGGSNSEPMSIGDQHSVVIRVLEHKAESVK 470
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
L+E D+ K K V ++AN+LV E GK T +
Sbjct: 471 SLDEAKNDITARLKRQKAEAVVLAEANKLVQEL-TAGKTVD------SLKFGATQSLVFA 523
Query: 538 DNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKDKFI 591
+N + + VF+ P V E VV + G QE+ +F
Sbjct: 524 ENNDPMLY----NAVFAMPKPTEGKAVYQATKETKGDIVVIALDKVVDGALSEQEQQQFA 579
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
L + L ++++ L+++ + ++D+++ +
Sbjct: 580 VQLARADQIALQNNLLNALRAKAKIEINDSVVNQ 613
>gi|294666558|ref|ZP_06731799.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603702|gb|EFF47112.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 656
Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats.
Identities = 103/670 (15%), Positives = 227/670 (33%), Gaps = 61/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA P F D KFS D + + LA+ ++
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQV-DGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L A S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLKLMGETRDVELAMLPPPAADT-APVSDAQIKQWYD 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + L+ YE K ++ PE R ++
Sbjct: 238 GHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297
Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+ A A ++ + G F LA+ + LG K +
Sbjct: 298 AGPDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K G+ I FGY + + +K SF++V+ +A + A +
Sbjct: 358 --FEDALFSMKAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L + A +
Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRSDASGVAANPAVL-----RAAF 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + + +++ + L++V V + + + ++
Sbjct: 471 SETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAAAA 530
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A+ L+ K G+ + + + + + R +FS P
Sbjct: 531 ADALLARVQK-GETLQALADSEKLQVQPIPGLPRTAPIPT---PAANRAIFSAPRPTEGK 586
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ +G + VF ++ + G P +++ L+Q+ + + + ++ +
Sbjct: 587 PSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMRKR 646
Query: 614 YSVTVHDNLI 623
Y + + + +
Sbjct: 647 YKIQIEEAQL 656
>gi|238783605|ref|ZP_04627626.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia bercovieri ATCC
43970]
gi|238715483|gb|EEQ07474.1| Peptidyl-prolyl cis-trans isomerase D [Yersinia bercovieri ATCC
43970]
Length = 607
Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats.
Identities = 116/616 (18%), Positives = 250/616 (40%), Gaps = 23/616 (3%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS---E 78
+ F++ G+ L S V Q++ + + + E G + Q++G ++
Sbjct: 1 MLSFILTGVGSYLIGGSN-DFAAKVNGQEISRAQLEQAVQSERGRLQQQLGEQFSALAAN 59
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
L +++L LV+ LDQ+ + +GL A +V I ++P F + KF ++ ++
Sbjct: 60 EGYMQQLRQQVLGQLVNNMLLDQYAKKLGLTASDEQVKDAIRQAPYFQTDN-KFDNNKYL 118
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
+ R G ++ + L ++ F + + R V ++
Sbjct: 119 ELVNRMGYTPDQFAQLQRQQLINQQLLQAFGDTGFVLPIEAQAMSELILQQREVRLATID 178
Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
+ + A ++ L ++++ K+++ APE +IS+I D + KI ++ +++ A Y+
Sbjct: 179 LKALQAQQKVTDEELKAYYDQNKNSFIAPEQMKISFIAMDAAAMQDKITVTEEDIAAYYD 238
Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
++K Y PE R + F N+ EA A + LKKG F +A+E+ + G
Sbjct: 239 QHKSSYTQPERRNYSVIQFKNEAEAKAALEELKKGADFAAMAKEKSTDIISRKNGGDLGW 298
Query: 319 YIPDVSLAD-SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
P+ + + L++KG + V+ S GY+I +++IKP EV +A Q++
Sbjct: 299 LEPETTADELKQAKLSEKGQLSDVVKSSVGYLIVRLNDIKPEQVKPLSEVHDALAKQVKQ 358
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
KA + +++ E + + ++ E+ D+ +D EV P +
Sbjct: 359 EKAVDAYYALQQKVSEA--ATSDNESLASAEEAAGAKAKHTDWFTRDSIPAEVNFKPVAQ 416
Query: 438 QLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ + P S + + ++I P E+V V + K K
Sbjct: 417 AIFDGGLIGENGAPGSNSDVITVDGDRAFVIRIDGHKPEGIEPFEQVRDQVAELVKRQKA 476
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
+ +++ + + K G S ++R ++++ + +F+
Sbjct: 477 EQLARVDGEKILTALKQGKG--EEAMKAAGISFGEKKTLSRAPDDDQ-----LVQTIFTL 529
Query: 556 PVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAY 609
P V + + V+ ++ + G P E FI+ + + + D+++A
Sbjct: 530 PHPQKDQPVYGLSQDRQDNIVLIELLSVTAGKLPEGEMKTFIAKMQEGSSGVTFDALMAN 589
Query: 610 LKSQYSVTVHDNLIQR 625
L Q ++ + Q+
Sbjct: 590 LHKQATIKMGPAEQQQ 605
>gi|302878839|ref|YP_003847403.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
capsiferriformans ES-2]
gi|302581628|gb|ADL55639.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
capsiferriformans ES-2]
Length = 631
Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats.
Identities = 107/641 (16%), Positives = 236/641 (36%), Gaps = 45/641 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + + + R +I L+++ +PF +G+ S + +V +K+ F +
Sbjct: 1 MFDFVHEKRR--FVQIVLLLIILPFAFFGVDSYRHSGDTDAP-ATVNGEKITKQEFDTAM 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+ + Q +G + + + ILDNLV+ L + + GL ++ I
Sbjct: 58 RQQQDKMRQVLGENFDPALFEKAEMKRAILDNLVAQRLLLERAKAAGLTVTDEQIAQVIG 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F KF + S LA + + + L+ + + SN + D
Sbjct: 118 GIDAFKD-GGKFDKARYTSALAAQNMTPAIFEARVKDELTGQQMRDAYTQNGYVSNAVAD 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R V + +R A A +A + +F+ + ++ PE ++ Y+ F +
Sbjct: 177 NIIAINEQQRIVSIAPILSRSFMAQAKVDDAAIKTYFDANQKEFQVPEQVKVEYVKFSIA 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------------F 287
+ K +I +E++ Y++++ ++ S E R ++ A +A
Sbjct: 237 DLIAKADIKAEEVRQYYDEHQSEFASAEQRQASHILLVVAATAPQAEQDAVKAKAEKLLA 296
Query: 288 QSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
Q ++ KF LA + + + LG F + + D K G+ + ++
Sbjct: 297 QVKQEPGKFADLARQNSQDPGSAVNGGDLGMFGRGMMVKP--FDEAVFSLKAGEISGLVK 354
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
FGY I ++ IK S F EV+ +IA ++R KA++ E + + + +
Sbjct: 355 SDFGYHIIKLTAIKASRATPFNEVQAEIAGKLRQQKAADSFAELADKFSNTVYEQSDTLK 414
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDG 461
+ + + + + K E+ +++ +F D + V +
Sbjct: 415 PAAV--LAGVKVEQSGWLSKGAAAGEIWT----AKMMQAIFSDDVIKNHRNTAAVEVAGS 468
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ + ++ E PA R L +V +K+ + + L+ + + GK
Sbjct: 469 TLVAARLLEHKPAAVRGLADVADSIKQKLLLKIALDMSVKQGTMLLGQLQQGGK------ 522
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGLSYVVFKVTNSK 580
+ ++ + ++F + + E Y + ++ K
Sbjct: 523 --AALDWSVAQPVT--HGQHSALDAAMVRKLFQADGSKLPQYVGSETADGYTIVRIDAVK 578
Query: 581 V---GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
++ ++ L QM +L + IA K + +
Sbjct: 579 EGAKPDEVKRSRYAQQLRQMAGDELFQAYIADAKKDAKIKL 619
>gi|300691410|ref|YP_003752405.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
solanacearum PSI07]
gi|299078470|emb|CBJ51122.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Ralstonia
solanacearum PSI07]
Length = 637
Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats.
Identities = 94/642 (14%), Positives = 224/642 (34%), Gaps = 43/642 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ + L+++F F+ +G+ + GS VG + S +++ + Q +G
Sbjct: 1 MFLVLLILVFPSFVFFGVQGYSRFMDGSHDAAKVGDTVITTSELDTRVREQTERLRQMLG 60
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKD 129
+ + + + +LD ++ + + L +V I + P D
Sbjct: 61 AQYDPRQFEGSQMRRDVLDGIIQQRVMVNEASRVNLSVADSKVRETIEQIPAVAQLRKPD 120
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
KF D ++ LA +G+ +++ L + V L+D+ +
Sbjct: 121 GKFDTDAYIKLLAAQGMTPEQFDARLRSELVLQQIPQSIVSTAFVPKSLVDRLIEARDQQ 180
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
R V ++L + + +++ ++ + PE + Y++F + K+I ++
Sbjct: 181 REVQALLLKPADYAGKVAVDDKAIQAYYDAHQQEFAVPEQVKAEYVVFSGEDMMKQIPVT 240
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------------FQSLKKGKKF 296
++L+ Y++N ++ + E R ++ A A + K F
Sbjct: 241 PEQLKEYYDQNAARFKTEEQRRAAHILIKLPDNAKPADKDAAKKRAEEVLAEVRKTPGNF 300
Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+LA++ LG +K +++F+L + GD + V+ FG+ I
Sbjct: 301 AELAKKYSGDPGSAAQGGELGFLAKGATV-PPFENALFALKQPGDISDVVESDFGFHIIK 359
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIV 411
+ +K S + VK ++ ++R A++K E S+ ++ + K+
Sbjct: 360 LEEVKGGGVQSLEAVKPELEREVRTQLANKKYTELADAFSNGVEDQSDSLKPVADKLKLQ 419
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIK 469
V + +++L +F D + V + + + +
Sbjct: 420 VQTADNVTR---VPNPALANSPINNDKVLKALFADDVIKNHRNTQAVQVGPTTLVAARAV 476
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
E PA +KL +V VK ++A + + + + GA
Sbjct: 477 EHRPATVKKLADVREQVKAKVLAEQSAVLAKKAGEEKLAAVKQSNS-----AEGFGA--- 528
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVG---PV 584
++R + + ++ + + + Y ++++
Sbjct: 529 -AQTVSRQ--QAQGMPPVALAAILRADAVKLPVTIGVDLGARGYALYRINKVLPPANVDP 585
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ L Q + ++ LK++ V V+ +I
Sbjct: 586 ARRAADAQQLAQAAGQADFNAYYEALKARSKVKVNSAVIDAA 627
>gi|319763570|ref|YP_004127507.1| ppic-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
denitrificans BC]
gi|330824229|ref|YP_004387532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
denitrificans K601]
gi|317118131|gb|ADV00620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
denitrificans BC]
gi|329309601|gb|AEB84016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
denitrificans K601]
Length = 640
Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats.
Identities = 100/644 (15%), Positives = 223/644 (34%), Gaps = 43/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IRK ++ WV + +++ F++ G+ F GS V V + + + + N+
Sbjct: 1 MLESIRKHTK-WVMGLLFLLIIPSFILVGIDRNYF-GGGSPVVARVDGKDITQADWDNAH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E I + ++++ S L+ LV L + + + R+ E+
Sbjct: 59 RMESDRIRAQS-PGIDAKLLDSPQARYATLERLVRDRVLQVAAQKMHMLTSDARLARELQ 117
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + + +G+ + +S + V+G V
Sbjct: 118 SIPQIAALKRPDGTLDAEAYRALAGAQGLTPEGLEARVRHDISVSQVMGSVVASAFAGPA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
A F+ R + + + ++A L +++ + ++ PE + Y++
Sbjct: 178 ESKLALDALFQRREIQVARFDPSAFVSKVAVTDADLEAYYKAHLAKFQQPEQATVEYVVL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ + I ++ D+L+ Y++N + E R ++ K+A A + K K
Sbjct: 238 DLDAVKAGITLNEDDLRTYYKENLSRLSGKEERRASHILVNAAKDAPAAEREKAKAKAQE 297
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + S LG F + + KKG+ +
Sbjct: 298 LLAEVRKAPGRFAEIARKESQDTGSAASGGDLGFFGHGAMVKP--FEDAVFSLKKGEISD 355
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
V+ FGY + ++++K SF+E++ + ++R +A K E +
Sbjct: 356 VVETDFGYHVIMLTDVKTPRQPSFEELRPSLEAELRQQQAQRKFAEVAETFANTVYEQPD 415
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ ++ + K+ V G++ A + + +
Sbjct: 416 SLQPVADKLKLKIHTATGVTRTSA--PGEKGALANPRLLEALFQPDSVQSKRNTEAIEIG 473
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + +I PA L++ V+ + K+AE + + +
Sbjct: 474 NSTLAAARITAYQPAMTLPLDKAREQVRSLYVADKSAEFARQEGQVRLAAWKASPDGAAG 533
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
+ + ++R +N+ + P + + + + G Y V KV
Sbjct: 534 LSAPV--------TVSRDRPQNQ--PRAVVDAALRAPTDKLPVWTGVDLAGQGYAVLKVN 583
Query: 578 NSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
++ Q+ + LK ++ V +
Sbjct: 584 RIVPRDAADEATARMEREQYLQLWVSAEAQAYYELLKQRFKVQI 627
>gi|296157831|ref|ZP_06840665.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
Ch1-1]
gi|295892077|gb|EFG71861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
Ch1-1]
Length = 645
Score = 224 bits (570), Expect = 3e-56, Method: Composition-based stats.
Identities = 98/642 (15%), Positives = 222/642 (34%), Gaps = 37/642 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + + ++V+ G+ S+ V SV K+ + + ++
Sbjct: 1 MLDFFRNHKR-LMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAM 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L Q +G + + + ++LD L+ L + + L A V +
Sbjct: 60 RQQLDRARQMLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D D + LA +G+ +Y + ++ + G S
Sbjct: 120 NDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKT 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + R V I + R A P++A L +++ +++++ P I Y++
Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
++ S+ +L+ Y+ N Y ++ K+A A
Sbjct: 240 SPATLATSVQPSDADLKKYYDDNIAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAEE 299
Query: 287 --FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
Q +F QLA++ + LG F + I D KK + +
Sbjct: 300 LLAQIKAHPDQFAQLAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFALKKDEVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ FGY I V+++KP+ T F EVK I+ ++ AS+ +D + +
Sbjct: 360 IVQTDFGYHIVKVTDVKPAITKPFDEVKDQISKDLKTQLASKAFTDDSEGFTSIVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + + + V + K + + +
Sbjct: 420 SLQPAADKYKLQLQTATVTPQPDPKLAPDSPLNNAKFLAAVFANDAVTARNNTQAIDVGG 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + A L+ V V++ V++ E + ++ K
Sbjct: 480 NTLIAARVTDYKAAAVPSLDAVKDAVRQKVIAVQSNEAAHKDGAAKLADFEKSKST---- 535
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
A + +++R D + +S ++ + + + + Y +++V
Sbjct: 536 -----AGFSSPLKVSRND--AQGVPPAALSAIYKADAQKLPAYVGVDLGDDGYAIYRVNA 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
G + + + Q+ + ++ + L+++ V
Sbjct: 589 VVAGTTVDPQRLAAAQQQIAQVDAQSEAEAYLEALRARSKVK 630
>gi|114330677|ref|YP_746899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
eutropha C91]
gi|114307691|gb|ABI58934.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
eutropha C91]
Length = 630
Score = 224 bits (569), Expect = 4e-56, Method: Composition-based stats.
Identities = 104/646 (16%), Positives = 252/646 (39%), Gaps = 47/646 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + + + + +I L + +PFL WGL S S V SV +++ + +
Sbjct: 1 MFDFV--NQKKTIVQIVLFIALLPFLFWGLESYQGMGSASD-VASVDGEEISRQEYEQAL 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + +G ++ S + +L+NL+ L +GL R+ EI
Sbjct: 58 RNQQENLRNMLGENFDASLLDSPQMRMAVLENLIQQKLLRHEAGRVGLAVLDSRLTAEIQ 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
LFH +D+KFS++ + L R+G++ + L R ++ G + S + D
Sbjct: 118 NIALFH-EDDKFSYERYRELLQRQGMSPAMFEARLAGDLMRQQLLEGITGSVIVSKTVAD 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ ++ + +N A+P A + +++ ++ ++ PE RI Y++ +
Sbjct: 177 RIASLSETKYEINRVTINPEQYINQAEPDEAAIQSYYDSHRQDFTLPERVRIEYVVLSLE 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS----------- 289
E K+ +IS++E++ ++++++++ E R ++ +A E ++
Sbjct: 237 ELAKQEQISDEEIKKYFDEHQDEFGRVEERRASHILLTVPVDATEEQKAAIKAKAEQILE 296
Query: 290 ------LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
K + +L+E+ G + + LG F++ + + + +
Sbjct: 297 QVKQDPDKFPELAKELSEDPGSAKAGGDLGFFARGLMVKAFEDTAFEMQLD--EIRGPVE 354
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMD 402
FG+ I ++ +K + F EVK+ I ++ KA+++ E + ++
Sbjct: 355 TPFGFHIIRLTAVKDANVAKFDEVKEGIRQTLQRQKAADRFGELSEDFSNIVYEQSDTLQ 414
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPD 460
+++ + +D K+ + E++L +F + + +
Sbjct: 415 PVAQMFNLSVQQSDWIDRNSKEPS------VIANERMLQAIFSEGAIRDHYNTEAIEVAP 468
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+++ ++ E PA + + V + + K A + Q + +
Sbjct: 469 DTFVSARVLEHRPASVQSIGLVKDKIIELLKQQIAAATAEEEGKQKLAKLQ--------- 519
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTN 578
SL + + + + + +F VE + + + + ++
Sbjct: 520 AGETDESLEWGEPVEISYTQKRGSDEEMLHALFQTDVEKLPAYTGVKTKKGGFDLIRINQ 579
Query: 579 SKVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
KV + + I+ L Q+ ++ L++ +A L+ +Y V +
Sbjct: 580 VKVPAAESGSSQYTMLINQLQQVHGQEELNAYLAGLRQRYEVKIKP 625
>gi|237746606|ref|ZP_04577086.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS]
gi|229377957|gb|EEO28048.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes HOxBLS]
Length = 647
Score = 224 bits (569), Expect = 4e-56, Method: Composition-based stats.
Identities = 106/644 (16%), Positives = 224/644 (34%), Gaps = 41/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR R I LV + F+ G+ V V + + + N+
Sbjct: 1 MLDFIRSHKR-LTQIILLVFIIPSFIFVGVEGY-KRFGDGDAVAKVNGKAITQQEWDNAQ 58
Query: 61 KQELGMISQKI---GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+++ Q+ G +S+ S +L NL++ L + L V
Sbjct: 59 REQAERFRQRAAVQGQPFDSKWIESSQFKWAVLQNLINRRVLLATLNKEHLTVPEQVVLQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+I P G D K + + LA +G+N + T+ ++ +
Sbjct: 119 KIREIPGLIGPDGKLNEARYKEVLAAQGLNPDMHFALMTQDMAMQQIAAPIEFSAFEPKA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + + R V +V + + LT ++ ++ + PE+ + ++
Sbjct: 179 VVTRVWNLFEQERDVQRLVFDAGAYRNKVSVTEDDLTAFYRAHEAQFTIPEHADVEVVVL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE------------ 285
D+ EK ++IS+ +LQ+ YE+N++++ PE R + ++ K A +
Sbjct: 239 DMPTVEKNVKISDADLQSYYEQNRDRFSIPEERRAQHILIAVAKNASDSEKAEAKKKAEE 298
Query: 286 -AFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
Q +F +LA+ + + LG F++ + + KKG+ +
Sbjct: 299 LLAQLKADPSRFAELAKAHSQDPGSARNGGDLGFFTRGKMVKP--FNDAVFGMKKGEISD 356
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGT 399
+ FGY + V++IKP+ +VK + +++ + S+K E +
Sbjct: 357 PVQTDFGYHLIAVTDIKPAVAKPLSQVKDSVLQELKRQETSKKFAEMSETFSNMVYEKPD 416
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ ++ K+ P + + K V +
Sbjct: 417 SLKPVADALKLTVHTFPNLARDPAVAARQNPLLADPKILQAIFSDDAVKGKHNTEAVEVS 476
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ +I + PA E+V + VK K + + + G
Sbjct: 477 PQVLVAARIAKHYPAELTPFEKVKSVVKAQVTNEKAMALAKAAGEAELARLKEGGAP-SG 535
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
L S R D ++ V V + + Y+++++T
Sbjct: 536 FSPGLLVSRQKITMAGRSD----------LAPVMKADVSKLPAYVGVEMAPNGYIIYRIT 585
Query: 578 NSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ ++ +T +M + L + + YLK + V +
Sbjct: 586 RVVTPEKTDGKLREAMSRQMTNVMAQQDLAAYMNYLKQEAKVEI 629
>gi|293391759|ref|ZP_06636093.1| SurA protein [Aggregatibacter actinomycetemcomitans D7S-1]
gi|290952293|gb|EFE02412.1| SurA protein [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 615
Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats.
Identities = 112/634 (17%), Positives = 235/634 (37%), Gaps = 33/634 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E + AS W +K + V F+I ++ L+S S+ V +++ +F N +
Sbjct: 3 MEKLHGASNNWASKFLFGFITVTFVISSMAGYLYSRI-DSSAAKVNGEEISQQAFQNQYN 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+S + L +++L +L+ L Q+++D+ L R+ EI
Sbjct: 62 IASQNLSPQEADSPT----VVANLKRQVLSSLIDQELLRQYVKDLKLGVSDERIKQEIVT 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+P F + KF + ++ L GI+ + Y + + L + + +
Sbjct: 118 TPSFQN-NGKFDNVLYQQLLQSNGISAETYAGYVREALRLEQLQSGLGITAFTVPVQQEA 176
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ +F+ R V L+ A S + +++ +K ++ PE ++ Y+
Sbjct: 177 LAKLFFQRRDVRLATLSLADEIAKQTVSAEEIQAYYDAHKADFTLPELVKVQYLDLSGAN 236
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
EK I IS+ E+ Y+ NK ++ + + + + +++A + +Q L+ G +F LA+
Sbjct: 237 MEKNINISDVEIAQYYQDNKSQFMTQGQQRLAHIEVKTEQQAQDLYQQLQNGAEFSTLAK 296
Query: 302 EQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L S P V + G F+ + Y I V K
Sbjct: 297 NHSIDPISAEKGGDLSWVSAGEFPKVFEDAAN--ALDVGKFSQPVKLDNSYHIILVEGRK 354
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
S + + V+ I Q+R + + KR+ E +S + + +
Sbjct: 355 DSAVLPLERVRPQIVAQIRQNLVNNQFFSVEKRVAEKAFEDSSSLNAAAEAG--GVKVQE 412
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ + + + S +++ D + +++ E +
Sbjct: 413 TGYFSRKDIPAALNYPNVVSAIFDSDIS--QGGSNSEPMSIGDQHSVVIRVLEHKAESVK 470
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
L+E D+ K K V ++AN+LV E GK T +
Sbjct: 471 SLDEAKNDITARLKRQKAEAVVLAEANKLVQEL-TAGKTVD------SLKFGATQSLVFA 523
Query: 538 DNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKDKFI 591
+N + + VF+ P V E VV + G QE+ +F
Sbjct: 524 ENNDPMLY----NAVFAMPKPTEGKAVYQATKETKGDIVVIALDKVVDGALSEQEQQQFA 579
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
L + L ++++ L+++ + ++D+++ +
Sbjct: 580 VQLARADQIALQNNLLNALRAKAKIEINDSVVNQ 613
>gi|83951843|ref|ZP_00960575.1| hypothetical protein ISM_14810 [Roseovarius nubinhibens ISM]
gi|83836849|gb|EAP76146.1| hypothetical protein ISM_14810 [Roseovarius nubinhibens ISM]
Length = 609
Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats.
Identities = 113/598 (18%), Positives = 243/598 (40%), Gaps = 27/598 (4%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
+V SVG K+ + + + + E+ + + G ++ +AR +GLD+ +L LV+
Sbjct: 26 SGNVQSVGSVGDTKIDINDYARTLQNEIRALEAQRGERLSFAQARELGLDQAVLGRLVTT 85
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
L+ + IG+ + EI F G D KF + L + G+NE + +
Sbjct: 86 TALEDETQRIGISIGDANLRDEILNIQAFQGLDGKFDRQAYEFALQQAGLNETRFEEDMR 145
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQ 215
+RT + G V G+R D + E R + + VL + +P+ L
Sbjct: 146 AETARTLLQGAVVAGVRAPEAYGDTLINYLGERRDISWAVLARADLQTGLPEPTEEDLAA 205
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
+ E ++ + PE K I+Y +E+ D L+A Y++ +Y PE R VE+L
Sbjct: 206 YHEAHQAEFTTPETKAITYAWLTPDMILDTVEVDEDALRAAYDERSAEYNQPERRLVERL 265
Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
VF + A +A ++ G+ F L + LSD+ +G ++ + A+
Sbjct: 266 VFLDSAAASDALARIESGEASFEDLVAARDLELSDVDIGDVTRAQLGAAG---DTVFAAE 322
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
GD + G + V+ + + V F+E + + +++ +A ++ +++
Sbjct: 323 AGDVVGPVDTDLGPALFRVNGVLAAQVVPFEEAEPMLRDELAGDRARRVIESSMDNIDDL 382
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
LA G +++ +++ + +L +D+ + +G + +
Sbjct: 383 LAGGATIEGLAQETDL---ELGKIDWHPEVTEGIGGY------ESFRQAAAAVTTDDYPQ 433
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
+ L DG +++ E+I R + +EEV + + W E + S++ + S+ G
Sbjct: 434 VIELDDGGLFAMRLDETIAPRVQPVEEVRDALAEAWTRQTIVEALRSQSEADIAALSQ-G 492
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+F ++G + T I R + + I VF V+ +E +
Sbjct: 493 TSFEELGF---TDISTAKDITRRGFDVDA-PREFIETVFEMEPGQVEI--VEGNGRLFLL 546
Query: 575 KVTNSKVGPVQEKDK------FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ + +D + +++DL ++ ++++ + + + +
Sbjct: 547 RLDAVNAPDAEAQDLVVLSQVLKNQAANSLSQDLFQALADDIRARAGIALDQSALNAV 604
>gi|325920988|ref|ZP_08182874.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
19865]
gi|325548522|gb|EGD19490.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
19865]
Length = 656
Score = 223 bits (568), Expect = 6e-56, Method: Composition-based stats.
Identities = 102/670 (15%), Positives = 226/670 (33%), Gaps = 61/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGDNFDPRTFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V I F D KFS D + + LA+ ++
Sbjct: 120 LGAEDAGIVIGDATVRDYITGIQAFQV-DGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L A S+A + QW++
Sbjct: 179 LQQSVIPQAIAESGFATKAEFERLLKLMGETRDVELAMLPPPAADT-APVSDAQIKQWYD 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + + + L+ YE+ K ++ P+ R ++
Sbjct: 238 GHAQDFRQPETVTIEYVEINAAKLQPATAADEATLRKRYEEEKGRFVEPDQRLTSHILIS 297
Query: 279 NQKEA-----------DEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+ A ++ + G F LA+ + LG K +
Sbjct: 298 AGSDPAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKGAGGDLGWVEKGTMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K GD I FGY + + +K SF++V+ +A + A +
Sbjct: 358 --FEDALFAMKAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T ++ +++ + L A A +
Sbjct: 416 FADVSGKLVDQVYKNPTVLEPAAKQVGLPVQTLGPFSRADASGIAANPAVLRS-----AF 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + + +++ + L++V V +T + ++
Sbjct: 471 SETLVQDGTVSDPITIAPNHSVVLRVTNHGAEQALPLDKVRDKVIAAIHADRTEKAAAAA 530
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A+ L+ K G+ + + + + + R +FS P
Sbjct: 531 ADALLARVQK-GETLQALAASEKLQVQPIPGLPRTAPIPT---PAANRAIFSAPRPTEGK 586
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ +G + VF + + G P +++ L+Q+ + + + + ++ +
Sbjct: 587 RSVGKVELDGGRFAVFVIAKATPGDLKQMPAEQQTMLREQLSQIDSNNAAQAYVKEMRKR 646
Query: 614 YSVTVHDNLI 623
Y + + + +
Sbjct: 647 YKIQIEEAQL 656
>gi|319405521|emb|CBI79140.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella sp. AR
15-3]
Length = 629
Score = 223 bits (567), Expect = 7e-56, Method: Composition-based stats.
Identities = 158/638 (24%), Positives = 310/638 (48%), Gaps = 16/638 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
MLE IR A +WVAKIFL L + F+ WG+ + +++ G+ + ++ +
Sbjct: 1 MLETIRNAVNSWVAKIFLTTLLLCFIFLWGVPQ--LHIMNEKELLTSGKSTITIDNYRLA 58
Query: 60 WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ ++ +G + + + + +L+ L D+ + + +
Sbjct: 59 LADQSLRLAITSHLGRMFTPDEIQRYKIPVFVLNQLQQDVLFDEQARKMKINLSKDMLAR 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I+ +F ++ F+ D+F++ L R NE+ ++++YTK R ++ + GM+ N+
Sbjct: 119 IISNDNIFQ-RNRAFNRDLFLNYLQRLHTNERNFLNYYTKKEKRKQLILASLSGMKAPNI 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ E R DY+V++ + +ADP+ +L +WF +K +RAPEY+ +S +
Sbjct: 178 FYKALATYHEEKRIADYLVIDLKKEEKVADPNQEILEKWFNTHKKKFRAPEYRTVSLLSI 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
E K ++S +E+Q Y +N ++ PE RT+E+L F ++ AD A + + +G F
Sbjct: 238 TSEEFLKPQDVSVNEIQTYYTQNASRFIIPEKRTIEELRFSTREAADNAAKKIAEGLSFD 297
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L +E+ K LSDI+ G ++ +P+ S KKG + VI+ G VI V++I
Sbjct: 298 ALVKEEKKKLSDITKGPLAENELPN--HLASEIFELKKGQISAVINDLQGPVIIRVAHIT 355
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
PS + Q+V+K+I + A+ V+ Y +E G S+ E++++ K+ +
Sbjct: 356 PSTQIPLQKVEKEIRQILAKNYATTHVRNKYTEIENARFEGASLAELAKQYKLPLRKI-T 414
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+D GK +G + +P K+ LL ++ + + D ++LP+G Y+W Q+ IPARDR
Sbjct: 415 IDKTGKTTEGISLTDLPQKDILLNAIYQSRENIDMD-PLSLPEGGYLWYQVDTIIPARDR 473
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
L E +V W+ + + KA ++ + + GK+ + LG TT + R
Sbjct: 474 TLSEAKQNVIIQWREEEIQRLLDEKAQDILKQLAN-GKSLDALATELGIIKQTTPALRRQ 532
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFISY 593
D+ ++ FG +G+ +F P + N + +++K+T S + +
Sbjct: 533 DS-SQIFGVEGVKALFYDPQDHYGVVKGVNAENRIIYKITTSIIPEDITAHTLLPDIRTN 591
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ M+ +DL ++ +Y + ++++ R + +
Sbjct: 592 IDMMIREDLKLEMLQVANKEYPIEINNSNYTRIFNNFQ 629
>gi|302383248|ref|YP_003819071.1| rotamase family protein [Brevundimonas subvibrioides ATCC 15264]
gi|302193876|gb|ADL01448.1| rotamase family protein [Brevundimonas subvibrioides ATCC 15264]
Length = 638
Score = 223 bits (567), Expect = 7e-56, Method: Composition-based stats.
Identities = 108/634 (17%), Positives = 226/634 (35%), Gaps = 15/634 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA-LFSVSGSSTVVSVGRQKVPFSSFINS 59
M+ + R +++ A V+L + FL+ G S +FS G +V+ G + V F
Sbjct: 1 MISLFRAFAKSKWAAGLFVLLILSFLVVGGSQTDIFSSLGPKHIVTAGDRSVDALQFRTE 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+++ + ++ G V +E + + L+ + + G+ V I
Sbjct: 61 FERVRTGMQEQAGRPVTNEDLVKENVHVRYLEGQTNRLGFLDWAYKAGIRVSEELVLTRI 120
Query: 120 ARSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
P F + +F + LA + + D + G+R +
Sbjct: 121 REIPAFFNQVTGQFDQAQYEQALAAQNVTPVMLEDEFRDTAVSQHYGTAIQAGLRTPRIY 180
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
F+ R + + P++A LT + + R PE++ + +LF+
Sbjct: 181 GALLAGQAFQVRDGRWFEVTQAMAGTTPAPTDAQLTAFINENAAQLRRPEFRIATVLLFN 240
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
I + + K+ +PE RT L Q AD +L+ G+
Sbjct: 241 DAPGFTPPAIPEARVVERFNFRKDALSTPERRTFTTLTVSTQAAADRIAGALRAGQTPQA 300
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+AE S+ + + +PD ++A ++F LA + I G G+ +A VS I P
Sbjct: 301 VAEA--NSIQPAVYDAQPRSALPDPAVATAVFGLAANQ-VSAPIQGRVGFTVAKVSVILP 357
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ V++ + +++ +V + E+ G + + + + LP
Sbjct: 358 GTPATLDSVREAVTAELQEEDMKARVYARVEAYEKARTEGKPLAAAAEQVGARFVQLPPF 417
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
G+ G+ + A P Q + + + + G Y +++ + PA
Sbjct: 418 TQDGRLPDGQPMNAPPQILQSAYAL----TKGGESDVIDAGQGQYFVLRLDDIRPAALPT 473
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
L E+ + + W + A +S+KA +L + G++ + + GA+L+ + +
Sbjct: 474 LAEIRGPLAEQWTQRENARRLSTKAEELATR-VRGGQDIAAVAASAGATLINRTGLQQNA 532
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
G + +F V P +VV +V + + + +
Sbjct: 533 ETQTALGQGVLEGLFGQARGQVFTGPGTEN-RFVVGRVDAVRSADPATASRLADQIRSRI 591
Query: 599 NKDLLDSVIAYLKSQY----SVTVHDNLIQRYLD 628
D++ + + L + L
Sbjct: 592 GNDIVTAGVEQLVTAAAVRSKAKNDPAAAVAALG 625
>gi|254521282|ref|ZP_05133337.1| peptidylprolyl isomerase [Stenotrophomonas sp. SKA14]
gi|219718873|gb|EED37398.1| peptidylprolyl isomerase [Stenotrophomonas sp. SKA14]
Length = 651
Score = 223 bits (567), Expect = 7e-56, Method: Composition-based stats.
Identities = 102/662 (15%), Positives = 217/662 (32%), Gaps = 50/662 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+ + L +L +PFL + ++ G+ V V
Sbjct: 1 MLQKLRDKTSGWIVTVILGLLMIPFLFV-IDNSYLGGVGAQNVAKVSAPPTWWRSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++QE Q+ G + S +LD L+ +
Sbjct: 60 PVRMLWQHHEISAQDFRTRFEQERMRERQQQGENFDPRAFESTENKLAVLDQLIDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA--REGINEKEYIDHYTKM 158
E G+ G V IA P F + KF+ + + LA ++ + +
Sbjct: 120 LVGEQAGVVIGDGAVREYIATIPAFLDSNGKFNENNYRLALAGGNPPRTPTQFQELVRES 179
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ L A ++A + QW++
Sbjct: 180 LQQSVIPSGLQNSGFVTQSETERLLKLLGETRDVELAALPEVPADT-APVTDAQIKQWYD 238
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-- 276
+ ++R E + Y+ + L+ YE K K+ SPE R ++
Sbjct: 239 SHGKDFRQAESVSLEYVEINGGTLPAPAAADEATLRKRYEDEKAKFTSPEQRQAAHILIT 298
Query: 277 ------FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
N+ A+ +E+ G LG + + +
Sbjct: 299 GDGAEAKANKIAAEAKAAGADFAALAKANSEDPGSKAQGGDLGWVERGAMVKP--FEDAL 356
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
AK GD + FGY I V+ ++ SF+EV+ +A + E R
Sbjct: 357 FAAKAGDVIGPVKTDFGYHIIKVAAVRGGQGKSFEEVRDTLAAEQLKADGERGFNELAGR 416
Query: 391 LEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
L + + + ++ K+ L + A + A + V +D
Sbjct: 417 LVDAINKSPSDLAAAAKEVKLPLQTLGPITRATASGIAADPAVL---RAAFSDVLVQDGT 473
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
S + + +++ P + L++ V + + + A+ ++ +
Sbjct: 474 ASDPIALGGASNHSVVIRVSAHTPEQAMPLDKAREQVIAAIRADRQRQASDKAADAVLAK 533
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIE 566
K G + + + L + R D +FS P ++
Sbjct: 534 L-KGGATLQSLAASEKLQLSPMPGLPRSQPVPT---PDIHRAIFSAPAPVNGKPSYGKVD 589
Query: 567 NGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
++F V G +++ + L+Q+ + + ++ ++ V +
Sbjct: 590 VNGHALLFAVNKINPGDIKEVTAEQQKQLKDQLSQIDGMAAAKAYVEAMRKKFVVQTTEA 649
Query: 622 LI 623
+
Sbjct: 650 NL 651
>gi|110834075|ref|YP_692934.1| peptidyl-prolyl isomerase [Alcanivorax borkumensis SK2]
gi|110647186|emb|CAL16662.1| peptidylprolyl isomerase [Alcanivorax borkumensis SK2]
Length = 643
Score = 223 bits (566), Expect = 9e-56, Method: Composition-based stats.
Identities = 113/649 (17%), Positives = 238/649 (36%), Gaps = 39/649 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++ R+ R V K+ L + +PF+I G S V V K+ +
Sbjct: 1 MQEFRRFVRGPVGKVLLAAIILPFVISGFYGYFVGGSTGDVVAEVEGSKITRGVVNQRVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ M+ ++ +N S + +LD +V+ + E + +V +I +
Sbjct: 61 RVRNMLREQS-PNMNPALLDSFVRPEMVLDGIVNEQLILSAAEQSNMVFSEKQVAADIYK 119
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
PLF D KFS F L G+N + Y+ + + + F+ L L++
Sbjct: 120 VPLFQV-DGKFSEQRFERELRARGMNPQTYVQGLRQDMLKEQFRAGFMQTDFSLPLELNE 178
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+R ++R + Y+ L+ + S+ + +++ + + PE ++SY+ +
Sbjct: 179 QRRLGEQSRDIRYVQLDIDSLRKQFTVSDEDVKAFYDDNQGEFMRPEEFKVSYVELSADK 238
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK---------- 291
++ ++++E++AEY+ K + V E ++ +
Sbjct: 239 YTDQVSVTDEEVEAEYDVRKSIMEEAGAGDARRHVSHILIELNDDRDLDQAKARAREAAK 298
Query: 292 ---KGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
G F +A + S LG SK +P+ + +I L+ PV+
Sbjct: 299 AIADGASFADVAAQYSDDLGSAQSGGELGVVSKGALPE-EMETAIAELSPGTVSAPVVTD 357
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+ ++I + S ++ I + +A + ED +LEE L +
Sbjct: 358 AGVHLIFVTQEDTATALPSLADLSDQIRADLTKARAESLLNEDVSKLEELLYEHPDLQSP 417
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + + + +D A ++P +Q L + + D + + Y+
Sbjct: 418 AEQVGVSVVTTDWIDLAAA----NAPLSLPQVQQALNSEQVRQQGHNSD-LIEVDSTHYI 472
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
V+I E PA L+EV +++ K ++V A ++ + +EG N +
Sbjct: 473 AVRIAEDKPAEPMPLDEVSFAIRERLKGELAMDKVQQLA-KMAEKTIEEGGNLESVATLF 531
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGP---VEMVKCFPIE--NGLSYVVFKVTNS 579
+ + R E + ++ FS P I S V ++VT+
Sbjct: 532 DVEIAEQEGLQRGGAEPAM---EVVNGAFSAPRAAEGDASPVSITRLGNGSVVAYQVTSV 588
Query: 580 KVGPVQEKDKFISY-----LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
G + L + + V+A L+ + V ++ + +
Sbjct: 589 ADGNAEPLSAAQQQAALIELGNVEGQRNFRQVVALLRDEGDVELYPSRL 637
>gi|319407091|emb|CBI80728.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella sp. 1-1C]
Length = 629
Score = 223 bits (566), Expect = 9e-56, Method: Composition-based stats.
Identities = 157/638 (24%), Positives = 308/638 (48%), Gaps = 16/638 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML+ +R + +WVAKIFL L + F++ WG+ + + +++ G+ + ++ +
Sbjct: 1 MLKTMRNSVNSWVAKIFLSTLLLCFILLWGVPQ--LHTTNKNELLTSGKSTITVDTYHLA 58
Query: 60 WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ ++ +G + + + + +L+ L D+ + + +
Sbjct: 59 LADQSLRLALTSHLGRMFTPDEIQKYKIPFFVLNQLQQDVLFDEQARKMKINLSKDMIAR 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +F + F+ D+F++ L + NE ++ +YTK R ++ + GMR ++
Sbjct: 119 IIGNDDIFQH-NRVFNRDLFLNYLQQLQTNENNFLKYYTKKEKRNQLISASLAGMRAPDI 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ E R DY+V++ + IADP+ +L +WF+ +K+ +RAPEY+ +S
Sbjct: 178 FYKALATYHEEKRIADYLVIDLKKEKKIADPNPEILEKWFDTHKNKFRAPEYRTVSLFSI 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
E K IS +E+Q Y +N ++ +PE R +E+L F ++ AD A + + +G F
Sbjct: 238 TSEEFLKPQNISVNEIQTYYTQNASRFITPEKRIIEELRFSTREAADNAAKKIAEGLNFD 297
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L +E+ K+LSDI+ G + +P+ S KKG+ + VI+ G VI V++I
Sbjct: 298 ALVKEEKKNLSDITRGPLEENELPN--HLASEIFELKKGEISAVINDLQGPVIIRVAHIT 355
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
PS + Q+V+ DI + A ++ Y +E G S+ E++++ K+ +
Sbjct: 356 PSTQIPLQKVENDIRQTLAKNYAVTHLRNKYTEIENARFEGASLKELAKQYKLPHRKI-T 414
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+D GK +G + +P KE LL ++ + + D ++LP+G Y+W Q+ IPARDR
Sbjct: 415 IDKTGKTTEGITLTDLPEKEVLLNAIYQSREGIDMD-PLSLPEGGYLWYQVDTIIPARDR 473
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
L EV + WK + + KA ++ + +K GK+ + LG TT + R
Sbjct: 474 TLSEVKQNAIFQWKEEEIQRLLDEKAQNILKQLAK-GKSLDALATELGIIKQTTPALQRQ 532
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFISY 593
+ ++ FG +G+ +F G + N + +V+K+T S + +
Sbjct: 533 NR-SQIFGVEGVKALFYGTKDHYGVVKSVNAANRIVYKITASIIPKNITAHTLSPDIRTN 591
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ +M+ +DL ++ +Y + ++++ R + +
Sbjct: 592 IDKMIREDLKLEMLQVANKEYPIEINNSNYTRIFNNFQ 629
>gi|301154695|emb|CBW14158.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Haemophilus
parainfluenzae T3T1]
Length = 625
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 105/635 (16%), Positives = 228/635 (35%), Gaps = 29/635 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + +++ K +L V FLI G+S L+ S V + + F+N
Sbjct: 1 MLIEKMHGVAHSFIGKAIFALLPVSFLIGGMSGYLY-GGNESFAAKVNGETISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE +Q+ G L + ++ LV + Q+ +++ L +
Sbjct: 60 YNQEFEARAQQEGESFLAKTDSVEFVTALRQNLIQRLVDQELIRQYAKELKLGVSDDMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P + KF + + L + G+ Y L+ +
Sbjct: 120 RAIVSDPNLQS-NGKFDNARYQQLLTQNGLTSDTYAAILRNALTLEQMQNGLADSEFVVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + + +F+ R L A + + +++ + PE ++ YI
Sbjct: 179 AQVKDSAQTFFQKRIARLATLPLADEVAKQKVTEEEIKAYYDANAKSLVQPEQAKVQYIR 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+E K ++ ++ Y++NK ++ S + + +KEAD +Q L+KG F
Sbjct: 239 VSANELGKLQPVTETQIAQYYQENKAQFISQ---KLAHIQLATEKEADAVYQELQKGADF 295
Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+LA+ + LG +P ++ L G ++ ++ Y I
Sbjct: 296 AELAKAKSVDKLSGAQGGELGWVKDNELPKNFEDAAL--LLNVGQYSTPVNVDGAYHIIL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V + K + EVK+ IA+ +R A + + K + A + D ++ +
Sbjct: 354 VQDRKE---RTLDEVKEQIADSVRKNLAGSRFQAVEKAVRAKAAESS--DSLAAVAEAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ GK+ + + + + + + ++ V++ +
Sbjct: 409 VKVEETDYFGKNNVPAALNFPNVTSAIFESDIAN--GGANSEPLTVGENEFVVVRVVDHK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ L+E + +++ K K + ++ KA Q V S + G S
Sbjct: 467 AEGLQSLDEAKSTIEQFLKREKADKVLTEKAEQAVKALSADPTKLPA-----GISFGEPQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--PVQEKDKF 590
MDN++ + + + VV + + QE KF
Sbjct: 522 TFTLMDNKDPVLYEGVFAIAKPQDGKAAYQVARNSKGDVVVVALERVEEPTLSEQELAKF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ L + +L ++ L+ + + ++ + I +
Sbjct: 582 STQLVRARQGELQGQLMQALREKAQIEINTSFINQ 616
>gi|78046641|ref|YP_362816.1| peptidylprolyl isomerase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78035071|emb|CAJ22716.1| peptidylprolyl isomerase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 656
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 104/670 (15%), Positives = 227/670 (33%), Gaps = 61/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA P F D KFS D + + LA+ ++
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQV-DGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L A S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATKSEFERLLKLMGETRDVELAMLPPPAADT-APVSDAQIKQWYD 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-- 276
+ ++R PE I Y+ + L+ YE K ++ PE R ++
Sbjct: 238 GHAQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297
Query: 277 ---------FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
K A A ++ + G F LA+ + LG K +
Sbjct: 298 AGADAAAQKAAEAKAAKLAAEAKQPGADFAALAKANSQDPGSKDAGGDLGWVEKGAMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K G+ I FGY + + +K SF++V+ +A + A +
Sbjct: 358 --FEDALFSMKAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L + A +
Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRSDASGVAANPAVL-----RAAF 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + + +++ + L++V V + + + ++
Sbjct: 471 SETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAAAA 530
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A+ L+ K G+ + + + + + R +FS P
Sbjct: 531 ADALLARLQK-GETLQALADSEKLQVQPIPGLPRTAPIPT---PAANRAIFSAPRPTEGK 586
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ +G + VF ++ + G P +++ L+Q+ + + + ++ +
Sbjct: 587 PSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMRKR 646
Query: 614 YSVTVHDNLI 623
Y + + + +
Sbjct: 647 YKIQIEEAQL 656
>gi|325577782|ref|ZP_08148057.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
ATCC 33392]
gi|325160527|gb|EGC72653.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
ATCC 33392]
Length = 625
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 108/635 (17%), Positives = 232/635 (36%), Gaps = 29/635 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + +++ K ++ V FLI G+S L+S S S V + + F+N
Sbjct: 1 MLIEKMHGIAHSFIGKAIFALIPVSFLIGGMSGYLYS-SNDSFAAKVNGETISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE +Q+ G L + ++ LV + Q+ +++ L +
Sbjct: 60 YNQEFEARAQQEGESFLAKTDSVEFVTALRQNLIQRLVDQELIRQYAKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P + KF + + L++ G+ Y L+ +
Sbjct: 120 RAIVSDPNLQS-NGKFDNVRYQQLLSQNGLTSDTYAAILRNALTLEQMQNGLADSEFVVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L A ++ + +++ + PE ++ YI
Sbjct: 179 AQVKDNAQVFFQKRIARLATLPLADEIAKQKVTDEEIKAYYDANAKSLVQPEQAKVQYIH 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+E K ++ ++ Y++NK ++ S + + +KEAD +Q LKKG F
Sbjct: 239 VSANELGKLQPVTETQIAQYYQENKAQFISQ---KLAHIQLSTEKEADSVYQELKKGADF 295
Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+LA+ + LG +P ++ L G ++ ++ Y I
Sbjct: 296 AELAKTKSLDKLSGAQGGELGWVKDNELPKNFEDAAL--LLNVGQYSTPVNVDGAYHIIL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V + K + +EVK+ IA+ +R A + + K + E A + D ++
Sbjct: 354 VQDRKE---RTLEEVKEQIADTVRKNLAESRFQAVEKAVREKAAESS--DSLAAVADAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ GK+ + + + + + + ++ V++ +
Sbjct: 409 VKVEETDYFGKNNVPAALNFPNVTSAIFESDIAN--GGANSEPLTVGENEFVVVRVVDHK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ L+E + +++ K K + ++ KA Q V S + G S
Sbjct: 467 AEGLQSLDEAKSTIEQFLKREKADKVLAEKAEQAVKALSTDSTKLPA-----GISFSEPQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--PVQEKDKF 590
MDN++ + + + VV + + QE KF
Sbjct: 522 TFTLMDNKDPMLYEGVFAIAKPQDDKAAYQVARNSKGDVVVIALERVEEPTLSEQELAKF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ L + +L ++ L+ + + +++ I +
Sbjct: 582 STQLVRARQGELQGQLMQALREKAQIEINNTFINQ 616
>gi|304322182|ref|YP_003855825.1| putative peptidyl-prolyl cis-trans isomerse D [Parvularcula
bermudensis HTCC2503]
gi|303301084|gb|ADM10683.1| putative peptidyl-prolyl cis-trans isomerse D [Parvularcula
bermudensis HTCC2503]
Length = 616
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 124/631 (19%), Positives = 249/631 (39%), Gaps = 21/631 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML RKA++ A + L + + F G+ S SG + VG ++ +
Sbjct: 1 MLTTFRKATKGVGAWVVLGLAILAFAFVGVP--TLSGSGGQEAIRVGGTVFEVAAVEEEF 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + E A + GL +++ + A + + + +GL + +
Sbjct: 59 SRRFQRQQRGENAPASREEAVAAGLLDQVVRDYGLRALILEEADTLGLAVSPEMLTTYLR 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F +D +F + F LA ++ E D + L + G+ +L
Sbjct: 119 AQPAFLDEDGEFDSNRFNRVLAANQLSLTELRDRLSLELIEGQLNRAVATGVGAPAILAQ 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
E R V + + IA PS L Q++E+ + YR E + +Y+L
Sbjct: 179 SLALRQGEERDVSLVTFSAPE---IAAPSEENLRQYYEERQGRYRTGEARGFTYLLLTDD 235
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+I IS+++++ Y+ +PEIR++ Q F + A +A +++ G F
Sbjct: 236 TIGAEIAISDEDVRQLYDARVGSLGTPEIRSLTQAQFRDASAARDALAAIEAGAAFNDAV 295
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
E G +L +L ++ I D ++A A I G FG V+ +++ I P+
Sbjct: 296 EAAGGTL--ATLDGVTESAIADQAVA-EAAFAAASPAILGPIDGIFGTVLVNLTQIVPAT 352
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
T SF+EV++D+ +R +++ + Y ++ GT + E ++ + ++ +
Sbjct: 353 TPSFEEVREDLEAALRQEDLGQRIDDIYTEIQFAGDDGTPLAEAAQGLDLSAVTISPKPL 412
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
A + L P + V LP+G + ++ E +P+ + E
Sbjct: 413 AALQDDDRLPP-------ALLAAVFTTAPGAYFEEVRLPEGGVAFFELGEIVPSSVQPFE 465
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
V +V DW+T + E + + V+ +G++F D G ++ T +
Sbjct: 466 AVEEEVATDWRTDQRIEALRG-VREAVMSAIADGQSFADAVAAEGETVSTRTL--SANVL 522
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK---VGPVQEKDKFISYLTQM 597
N + +FS P+ V + + KV + + + L++
Sbjct: 523 NDDLPPALVEAIFSRPIGEVLDALGSDRTDLTLAKVEDVRFIAPSTAPSLAQLRQTLSRD 582
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ DL ++ + + Y + V+D L+
Sbjct: 583 IATDLFEAYLLSAEQDYGIRVNDGLLAERFG 613
>gi|226941261|ref|YP_002796335.1| peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis
HLHK9]
gi|226716188|gb|ACO75326.1| Probable peptidyl-prolyl cis-trans isomerase [Laribacter
hongkongensis HLHK9]
Length = 607
Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats.
Identities = 112/641 (17%), Positives = 235/641 (36%), Gaps = 59/641 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E ++K T V KI L + + F+ +G+ + + + + VG +K+ +
Sbjct: 1 MFEFVQK--NTLVIKIILGAVALTFVGFGVGSY-TAATDDAYLAKVGGEKIYKQDIERAL 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
G +S + +++L++L+ L G+ + IA
Sbjct: 58 N----------GQPADSA------VRQQVLESLIRQKLLLADAGQHGMRVTDAELRRVIA 101
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + F + L + ++ +++ L + FV S ++
Sbjct: 102 GIPAFQD-NGHFDSKRYEEYLQSQYMSAEQFQARIRDELMVQQQLSAFVDATFVSPGAVE 160
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + E R ++ L +A + ++++ K ++ PE R+ Y+L +
Sbjct: 161 RVHKLLAEQRQINQYRLTAAQFLPGVKVDDADVQRFYDSNKARFQTPEKVRLEYVLLSLE 220
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-------------AF 287
E K +++S +++ YE++K + E R V ++ K A
Sbjct: 221 ELAKTVQVSEADVRKYYEEHKAELAGDEQRQVAHILIAVPKGASAADKARLKTEAEAIVK 280
Query: 288 QSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+ +F LA+E+ LG F + + + KG + +
Sbjct: 281 EVRSNPARFAALAQEKSADPGSAAKGGDLGWFGRGVMVKPFEDSA--FKLAKGQVSDPVE 338
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
FGY I V I T ++ DI ++ KA ++ + L + + D
Sbjct: 339 TEFGYHIIKVEGI---KTPDLSTMQADIHARLARQKAGALYRQQLETLGDVSYQQS--DS 393
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ + + + + ++ K G + A P ++ F + L +
Sbjct: 394 LKPVSEALKLPVQQTEWIVKGQPGSGIVANPKVDEAAFS-DDVFKGKHNSEVIDLGNERS 452
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ V++ + PA+ + L EV ++K+ K A E++ KA + +L K GK
Sbjct: 453 VVVRVAAAEPAKLQPLAEVAPVIRKEL-ADKAARELAVKAGEKLLAELKAGKTPD----- 506
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGLSYVVFKVTNSKVG 582
+ Q++R D + G D VFS V + + G + + ++
Sbjct: 507 --VAWSAAQQVSRRDPAS--LGRDVQRAVFSASVSKLPAYAGAAEGDGFTLVRIDRLLPA 562
Query: 583 PV---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
E+ + + L Q+ + S + L++ Y VT+
Sbjct: 563 GALTGAERQQLVGMLAQLQTAADVTSYLNGLRAAYPVTLKQ 603
>gi|163742798|ref|ZP_02150183.1| hypothetical protein RG210_15675 [Phaeobacter gallaeciensis 2.10]
gi|161384053|gb|EDQ08437.1| hypothetical protein RG210_15675 [Phaeobacter gallaeciensis 2.10]
Length = 613
Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats.
Identities = 118/633 (18%), Positives = 246/633 (38%), Gaps = 32/633 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M ++K S T+V I + +L + +G A+ S+V VG Q+V +
Sbjct: 1 MAAGMKKLSNTFV-WILMGMLIIGLAGFG---AVNFTGSVSSVAVVGDQEVSVDDYAREL 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++E + + G V + ++GLD+ +L L++ A LDQ D+GL ++ EI+
Sbjct: 57 QREQRALEAQTGQRVPIAQMTALGLDRVVLGRLIAIAALDQESSDLGLSIGDQNLFDEIS 116
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
R P F F+ D + L G+ E + + +RT V G + G + L D
Sbjct: 117 RIPAFQDGTGAFNRDTYQYALDNIGLTEAAFEADLRRESARTLVQGAIMAGTEMPDTLRD 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ RS D++ ++ + +PS L +++ D + P K I+Y
Sbjct: 177 TLTSYVGARRSFDWLTVSEDSIALTEVEPSEDELRAFYDANIDQFTLPRTKVITYAALRP 236
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAFQSLKKGKKFIQ 298
+IEI L+ + +Y PE R VE+LVF N+ Q G F
Sbjct: 237 DALVDEIEIDAAALEQLFNDRSAEYQVPERRLVERLVFANRDAADSAKAQLDINGTTFDA 296
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
L ++G SL D+ LG + + A+ GD + G + ++
Sbjct: 297 LVADRGLSLQDVDLGDVTMGDLASAGQ---DVFAAQVGDVVGPLDSDLGPALFRINGRLE 353
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ S ++VK ++ ++ +A ++ + + + LA G +++E+ + +L +
Sbjct: 354 ARVTSLEDVKDELRAELATDRARRLIETRSEEINDMLAGGATLEELIDEPGM---ELGKI 410
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D+ G + L DGS +++ E + R
Sbjct: 411 DWHNGSTDGI------AAYDGFRQAASAVTAEDFPEVAFLEDGSLFAIRLDEELEPRPEP 464
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
+ ++ W++ + + + ++A +L + ++ + G L + + R
Sbjct: 465 FADAQDKLRAAWQSKRLQDALEAEAERL-AGMLRNDEDLPE-----GIELTSETGLTRAA 518
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS-----KVGPVQEKDKFISY 593
+ +++VF V + + + VV ++T + + +
Sbjct: 519 YIDAA-PQPLMARVFDLAEGDV--AVVSDDTATVVVRLTETLPVADTPEMTALAEAMGTQ 575
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L Q + + L ++ + +++ + + +
Sbjct: 576 LDQALAQALFEAFVQDAQTRAAPRIDPQALNAV 608
>gi|320325365|gb|EFW81432.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
glycinea str. B076]
Length = 627
Score = 222 bits (564), Expect = 1e-55, Method: Composition-based stats.
Identities = 98/640 (15%), Positives = 217/640 (33%), Gaps = 38/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++Q++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+D R ++ D+ L ++ + ++++ + +PE + YI
Sbjct: 180 AQVDAFARLE--KQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+++ +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDEQAKAKIEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L KG+ F LA+E + LG K + D + D++++L K + +
Sbjct: 298 LAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKG-VYDPAFEDTLYALNKDQ-VSQPVRTD 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + ++ +F +K + ++ +K E K+LE+ + + + +
Sbjct: 356 FGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSSFESSDLSQPA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + G + A I + S +T+ L + +
Sbjct: 416 QDLGLKVQTTAPFGREGGEGITANRAVI-----QAAFSPEVLEEGSNSNTLELDPETVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ KE + + LE V + ++ +K L+ K G
Sbjct: 471 VRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGLRDGKIPLA--AKQDG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK 580
+ + R + + +F P K P S+V+ ++
Sbjct: 529 RDWKSMEAVTRS---QEGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLNGVN 585
Query: 581 ---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S+ +
Sbjct: 586 QAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625
>gi|319943847|ref|ZP_08018128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis
ATCC 51599]
gi|319743080|gb|EFV95486.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis
ATCC 51599]
Length = 649
Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats.
Identities = 108/642 (16%), Positives = 224/642 (34%), Gaps = 31/642 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + +R R + LV++ F+ +G+S +V SV + VP + F ++
Sbjct: 1 MFDFVRTHQR-LAQGLLLVLIMPAFVFFGISGYDRMFGDGDSVASVDGEPVPRAYFEQTY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ + Q +G ++ + ++L+NL++ L + G + I
Sbjct: 60 RQQVQQMQQMMGDNYDAAVFDNQATRMEVLENLITRQALLADARRARITVTPGEIQKAIL 119
Query: 121 RSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ KF + + LA G+ +Y +ML+ V ++
Sbjct: 120 DQHADLRDANGKFDIEGYKRLLAANGLTPAQYEAQMGQMLAVGAVERAVADSAMVPQTVV 179
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
D R V +++ R P++ L +++ + + PE ISY+
Sbjct: 180 DGVFASQENRRVVRTLLVTPRDYEKGLAPTDEQLKAYYDAHASAFDLPESVDISYVALRR 239
Query: 240 HEK-EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-------- 290
+ K +E S EL+A Y+K++ ++ E R ++ + AD A +
Sbjct: 240 TDMLPKDVEPSEKELEAYYQKHRNQFNEAEERQASHILLKVPEGADAAAKEKVKARAEAL 299
Query: 291 -----KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
KF +LA++ + LG F ++ + AD+ F L K G V
Sbjct: 300 LAEAKAHPDKFAELAKKNSEDPGSAEQGGDLGFFERDTMVKP-FADAAFGLDKPGFT-DV 357
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ +G+ + V+ +K EVK + R +A+ + + + L +
Sbjct: 358 VETEYGFHVIQVTGVKGGGEKPLAEVKPQLVKMWREEEAARRYNQAAEALSNMVYEQAES 417
Query: 402 -DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ R K+ V + + + + +
Sbjct: 418 LKPAAERFKLNIEQAKGVGRKPAANAPEGSPLANARLLEQLYAPDALEEKRNTTAIEVSP 477
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
G + ++ P R + L+EV V++ W + A + + E + +D
Sbjct: 478 GVLVSARVDAHHPQRRQTLDEVKDTVRQRWIADEAARLAREAGEKRLAELREA-AGAKDA 536
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
L + L N I+R + F + + + + Y + V
Sbjct: 537 KAALPSGLSEENTISRSQP--GRLQQPALKAAFGVSADQLPAWVGADLGKDGYQLIHVEK 594
Query: 579 SKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + D + + L Q+M + + LKS +
Sbjct: 595 ALPPDEAARQRLDTYRTQLRQLMANAERQAWVDTLKSTLKID 636
>gi|90416122|ref|ZP_01224055.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
HTCC2207]
gi|90332496|gb|EAS47693.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
HTCC2207]
Length = 618
Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats.
Identities = 110/630 (17%), Positives = 224/630 (35%), Gaps = 28/630 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R + +A ++++ + F G+ S SG+ T V V +KV S + +
Sbjct: 1 MLDSFRHNMKG-IAFGIVILIAIVFAFSGIGSLSMSGSGADTAVIVNGEKVTELSVLRAI 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E I +++ + ++++ L+ L Q + G+ +
Sbjct: 60 SSEKRRIL-NENEGLDASLLEDELIRPQVVEQLIGRRLLSQAAKSGGMGISSRTTSKLLL 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P F +D +F D+++ + +G +++ L V FV + LD
Sbjct: 119 GTPAFLSEDGRFDQDLYLYTIRAQGYTSGTFLEMLRDDLLIEQYVRGFVASGFVTASELD 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ RS Y+ L + D S+ + ++E Y+APE I YI +
Sbjct: 179 LIASITEQQRSYYYLTLPLQPAVDAVDLSDEQIATYYEDNNQRYQAPEQVIIDYIELNPE 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD--EAFQSLKKGKKFIQ 298
++ +++ A YE+ ++ S R ++ + E + L G+ F
Sbjct: 239 LFSATQSVAEEQILARYEEQRDSLESTTSRQAAHILLAQPSDDVLAEINEKLAAGEAFEA 298
Query: 299 LAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+E + + LG S + P+ ++ + G+ +P + G + +
Sbjct: 299 LAKEYSEDVGSADFGGDLGYTSGDTFPES--FETALEALQVGEVSPPVSTDSGIHLIKLL 356
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ V F + I ++ + E L+E ++ EI+ ++ +
Sbjct: 357 D-IQEKIVDFDSERARIEQELVTELTDVWLVEKLANLKELSYNAENLAEIATDLELTAQI 415
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
AG G ++A P + F +D + D + L D Y+ +++ +SIPA
Sbjct: 416 SEPFTRAG----GAGISANPAVYKAAFSSQVLEDSYASD-VLELGDDRYVVLKLNKSIPA 470
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R + L EV V ++++ +L+ G++ + K
Sbjct: 471 RQKALSEVRGAVVASLTDQLARANLATRGAELLAR-VDSGEDIETVAKAEDLEWQVVLDA 529
Query: 535 NRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVGP-----VQE 586
R + F P E + +VV +T+ + G +
Sbjct: 530 KRST---GGTNNEIKRFAFQLPATATEDLIESFYARSGDFVVLALTSVEAGDSSKLSEDQ 586
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
K L +V L+ V
Sbjct: 587 KASLSYAGVSSTGGRELQAVQKSLRDNADV 616
>gi|257483811|ref|ZP_05637852.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|320327650|gb|EFW83658.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330985643|gb|EGH83746.1| periplasmic folding chaperone [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331012683|gb|EGH92739.1| periplasmic folding chaperone [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 627
Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats.
Identities = 98/640 (15%), Positives = 217/640 (33%), Gaps = 38/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++Q++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+D R ++ D+ L ++ + ++++ + +PE + YI
Sbjct: 180 AQVDAFARLE--KQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+++ +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDEQAKAKIEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L KG+ F LA+E + LG K + D + D++++L K + +
Sbjct: 298 LAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKG-VYDPAFEDTLYALNKDQ-VSQPVRTD 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + ++ +F +K + ++ +K E K+LE+ + + + +
Sbjct: 356 FGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQPA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + G + A I + S +T+ L + +
Sbjct: 416 QDLGLKVQTTAPFGREGGEGITANRAVI-----QAAFSPEVLEEGSNSNTLELDPETVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ KE + + LE V + ++ +K L+ K G
Sbjct: 471 VRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGLRDGKIPLA--AKQDG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK 580
+ + R + + +F P K P S+V+ ++
Sbjct: 529 RDWKSMEAVTRS---QEGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLNGVN 585
Query: 581 ---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S+ +
Sbjct: 586 QAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625
>gi|58580660|ref|YP_199676.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58425254|gb|AAW74291.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 675
Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats.
Identities = 103/670 (15%), Positives = 225/670 (33%), Gaps = 61/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 20 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 78
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S ++LD LV +
Sbjct: 79 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 138
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA F D KFS D + + LA+ ++
Sbjct: 139 LGAEDAGIVIGDASVRDYIANIQAFQV-DGKFSPDKYRAALAQGTPPRTPAQFDALVRDS 197
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L A S+A + QW++
Sbjct: 198 LQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPA-MDTAPVSDAQIKQWYD 256
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + L+ YE+ K ++ P+ R ++
Sbjct: 257 GHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 316
Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+ A A ++ G F LA+ + LG K +
Sbjct: 317 AGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 376
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K GD I FGY + + +K SF++V+ +A + A +
Sbjct: 377 --FEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLAAEQLKADADKA 434
Query: 384 VKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L + A +
Sbjct: 435 FADVSGKLVDQLYKNPTALEPAAKQVGLPVQTLGPFSRSDASGVAANPAVL-----RAAF 489
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + + +++ + L++V V + AE+ ++
Sbjct: 490 SETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALLLDKVRDKVTAAIRAD-RAEKAAAA 548
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A +L + G+ + + + + + R +FS P
Sbjct: 549 AADALLARVQRGETLQALAASEKLQVQPIPGLPRTAPIPT---PAANRAIFSAPRPTEGK 605
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+G + VF ++ + G P +++ L+Q+ + + + ++ +
Sbjct: 606 PSFGKVELDGGRFAVFAISKATPGNLKQMPAEQQTMLREQLSQIDGNNAAQTYVKQMRKR 665
Query: 614 YSVTVHDNLI 623
Y + + + +
Sbjct: 666 YKIQIEEAQL 675
>gi|170692414|ref|ZP_02883577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
graminis C4D1M]
gi|170142844|gb|EDT11009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
graminis C4D1M]
Length = 646
Score = 222 bits (564), Expect = 2e-55, Method: Composition-based stats.
Identities = 99/643 (15%), Positives = 223/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + + ++V+ G+ S+ V SV K+ + + N+
Sbjct: 1 MLDFFRNHKR-LMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDNAM 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L Q +G + + + ++LD L+ L + + L A V +
Sbjct: 60 RQQLDRARQMLGAQFDIKAFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D D + LA +G+ +Y + ++ + G S
Sbjct: 120 NDPVISSLKNPDGSIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPAAIQGSAFTSKT 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + R V I + R A P++A L +++ +++++ P I Y++
Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ ++ EL+ Y+ N Y + ++ K+A A ++ K K
Sbjct: 240 SPATVAASVQPADAELKKYYDDNIAHYRTEGQVRASHILIAAPKDASAADKAKAKQKADE 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + LG F + I D KK + +
Sbjct: 300 LLAQIKAHPDQFAQIAQQNSQDPGSAAKGGDLGYFGRGMIAGGKAFDDAVFALKKDEVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ FGY I V+++KP+ T F EVK IA ++ AS+ +D + +
Sbjct: 360 IVQTDFGYHIVKVTDVKPAATKPFDEVKDQIARDLKTQLASKAFSDDSEGFTSIVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + + + V + K + + + +
Sbjct: 420 SLQPAADKYKLQLQTATVTPQPDPKLPPDSPLNNAKFLAAVFANDSVNARNNTQAIDVGG 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + A L+ + V++ ++ E + E K
Sbjct: 480 NTLIAARVTDYKAAAVPALDAIKDTVRQKVIAAQSNEAAHKDGIAKLAELEKSKAT---- 535
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
+ +++R D + +S ++ + + + + Y +++V
Sbjct: 536 -----TGFSSPLKVSRND--AQGMPPAALSAIYKADAQKLPAYVGVDLGDDGYAIYRVNA 588
Query: 579 SKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G Q + Q+ ++ ++ + L+++ V +
Sbjct: 589 VVTGGAVDPQRLAAAQQQIAQVQSQSEAEAYVEALRARSKVKL 631
>gi|190150329|ref|YP_001968854.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307263670|ref|ZP_07545279.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189915460|gb|ACE61712.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306870983|gb|EFN02718.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 625
Score = 222 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 230/639 (35%), Gaps = 32/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + ++ V KI ++ + F+I G+ L G + V V ++ +F +
Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGLV--GGDTAAVKVNGTEITQQAFNAAR 58
Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++
Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI SP+F +D KFS+D++ L G++ Y + + + + +G
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSEFNV 175
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + R V + S L ++++ +K PE + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLTVEYV 235
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ +++++++++ YEKNK Y + + N+ +A + +K G
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +LA+ + LG P ++ + + G + V++ Y I
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPKA--FEAAAASLQDGQVSAVVNVDGAYHII 353
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
V K + ++VK I +R + + + S++ +++ +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESLAQAGGV 413
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + R G++ P ++ ++ +
Sbjct: 414 KVQKSAQFTQQNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMFV--RVSD 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
R + LEE +V + K K + + +KA + V ++ K+ S
Sbjct: 472 YQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNEG--------KDEKVSFGN 523
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ E++ VFS P V ++ + G ++E
Sbjct: 524 AQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDGSLEEF 581
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
Q L + ++ L+++ S+ V+ + + +
Sbjct: 582 KPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620
>gi|330959391|gb|EGH59651.1| periplasmic folding chaperone [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 627
Score = 222 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 101/640 (15%), Positives = 223/640 (34%), Gaps = 38/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ +SQ++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSEAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
++ R ++ D+ L PA ++ + ++++ + +PE + YI
Sbjct: 180 AQVEAFARLE--KQTRDFASLTLPADPAAVKVTDDEIKAHYDQHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+++ +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLAEQRRAAHILIEVNDKLNEEQAKAKIEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L KG+ F LA+E + LG K + D + D++++L K + +
Sbjct: 298 LAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKG-VYDPAFEDALYALNKDQ-VSQPVRTD 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + ++ +F +K + N ++ + +K E K+LE+ + +++ +
Sbjct: 356 FGWHLIKLLGVEAPSVPTFASLKDKLTNDLKSQQVEQKFVEVTKQLEDSAFESSYLNQPA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + G + A I + S +T+ L + +
Sbjct: 416 QDLGLKVQTTAPFGREGGEGLTANRAVI-----QAAFSPEVLEEGSNSNTLELDPETVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ KE + + LE V + ++ + +K L+ K G
Sbjct: 471 VRAKEHLQPQQLPLESVASSIRAQLVKEHASAAAKAKGEALLAGLRDGKIPLA--AKQQG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK 580
+ R + + +F P K P S+V+ ++
Sbjct: 529 QDWKVMEAVTRSQ---EGVDPQVLQTLFRMPKPNGKDKPEFASITAADGSFVIVRLNGVN 585
Query: 581 ---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S+ +
Sbjct: 586 QATAPNDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625
>gi|90407416|ref|ZP_01215600.1| putative peptidyl-prolyl cis-trans isomerase D [Psychromonas sp.
CNPT3]
gi|90311447|gb|EAS39548.1| putative peptidyl-prolyl cis-trans isomerase D [Psychromonas sp.
CNPT3]
Length = 635
Score = 222 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 110/642 (17%), Positives = 245/642 (38%), Gaps = 37/642 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R+ S+ AKI L+V+ + F + G+S L +S ++V ++ +S +
Sbjct: 1 MLDKMREGSQGIAAKIILIVIILSFALAGVSGYL-GGGNASVAITVNGDEISNASVEQEY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
K E + Q+ G + + + + L+S + Q I D+ L +V
Sbjct: 60 KNERSRLQQQYGEQFDIIAASPGFVKQVRAQAKQTLISNLLIAQSIADMDLRIGDEQVKD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + P F K +F+++ ++S L R ++ + L R ++ V +
Sbjct: 120 AIRKMPEFQVKG-EFNNEQYLSTLRRASYTPAKFSQSIKQDLVRRQLLNTLVSSEFILPI 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+D + + R + ++ R P S + ++++++ N+++ + + Y+L
Sbjct: 179 EIDNVDKLQAQQRVARILNISGRAFPQTTPISIKDIQAYYDQHEQNFQSLQQVSVDYVLL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ-----KEADEAFQSLKK 292
D H+ +K IS+ + QA Y+ ++ Y E R V ++ K+A +L+K
Sbjct: 239 DAHKLSQKTVISDVQAQAYYDDHQVDYQRVERRKVAHILVQGHSADALKKAQTILLALEK 298
Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F LA + + +D +L F + D + F+L K + ++ +FGY
Sbjct: 299 GADFSVLARAKSEDILSAKNDGALDWFEHGVM-DEQFDKASFALTAKAPLSDIVKSTFGY 357
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRR 407
I + +I+ T+ F +VK + ++ A E+ + ++L E S+DE +
Sbjct: 358 HIIKLLDIQQKQTLPFAQVKATVMKTLKKENADERYYDLQQQLREVAFEAPDSLDEAAGV 417
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ L + A + L + L D + V+
Sbjct: 418 VNTQIQHIALFSRDNVPALLDDPALL-----NLLFDIDFREEGLNSDVFELSDKRSIVVR 472
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ A L++V +K + + Q++ + +K G++ + ++
Sbjct: 473 VSNFKEAATESLDKVSDTIKSQLSEQNSRAKAHDFTLQVLEKLNK-GESVEALLQDKSLQ 531
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE-------NGLSYVVFKVTNSK 580
++R E + +VF+ + + + +++
Sbjct: 532 FSKALTLSRYSRE---VNPQVVQKVFTLAKPQADKVTRDWVSTNDTGDTGFAIIELSKVL 588
Query: 581 VGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
K++ + L + ++ + I L +
Sbjct: 589 DTKSATTMPALKEQLGAMLVRGGSEATYQAWIMQLMQNADIK 630
>gi|307250251|ref|ZP_07532205.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306857692|gb|EFM89794.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 625
Score = 222 bits (563), Expect = 2e-55, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 230/639 (35%), Gaps = 32/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + ++ V KI ++ + F+I G+ L G + V V ++ +F +
Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGLV--GGDTAAVKVNGTEITQQAFNAAK 58
Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++
Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI SP+F +D KFS+D++ L G++ Y + + + + +G
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSEFNV 175
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + R V + S L ++++ +K PE + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLTVEYV 235
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ +++++++++ YEKNK Y + + N+ +A + +K G
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +LA+ + LG P ++ + + G + V++ Y I
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPKA--FEAAAASLQDGQVSAVVNVDGAYHII 353
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
V K + ++VK I +R + + + S++ +++ +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + R G++ P ++ ++ +
Sbjct: 414 KVQKSAQFTQQNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMFV--RVSD 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
R + LEE +V + K K + + +KA + V ++ K+ S
Sbjct: 472 YQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNEG--------KDEKVSFGN 523
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ E++ VFS P V ++ + G ++E
Sbjct: 524 AQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDGSLEEF 581
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
Q L + ++ L+++ S+ V+ + + +
Sbjct: 582 KPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620
>gi|188578367|ref|YP_001915296.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188522819|gb|ACD60764.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 675
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 102/670 (15%), Positives = 225/670 (33%), Gaps = 61/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 20 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 78
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S ++LD LV +
Sbjct: 79 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 138
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA F D KFS D + + LA+ ++
Sbjct: 139 LGAEDAGIVIGDASVRDYIANIQAFQV-DGKFSPDKYRAALAQGTPPRTPAQFDALVRDS 197
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L + S+A + QW++
Sbjct: 198 LQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPAMDTAL-VSDAQIKQWYD 256
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + L+ YE+ K ++ P+ R ++
Sbjct: 257 GHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 316
Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+ A A ++ G F LA+ + LG K +
Sbjct: 317 AGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 376
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K GD I FGY + + +K SF++V+ +A + A +
Sbjct: 377 --FEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLAAEQLKADADKA 434
Query: 384 VKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L + A +
Sbjct: 435 FADVSGKLVDQLYKNPTALEPAAKQVGLPVQTLGPFSRSDASGVAANPAVL-----RAAF 489
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + + +++ + L++V V + AE+ ++
Sbjct: 490 SETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRAD-RAEKAAAA 548
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A +L + G+ + + + + + R +FS P
Sbjct: 549 AADALLARVQRGETLQALAASEKLQVQPIPGLPRTAPIPTPVAN---RAIFSAPRPTEGK 605
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+G + VF ++ + G P +++ L+Q+ + + + ++ +
Sbjct: 606 PSFGKVELDGGRFAVFAISKATPGNLKQMPAEQQTMLREQLSQIDGNNAAQTYVKQMRKR 665
Query: 614 YSVTVHDNLI 623
Y + + + +
Sbjct: 666 YKIQIEEAQL 675
>gi|187923900|ref|YP_001895542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phytofirmans PsJN]
gi|187715094|gb|ACD16318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phytofirmans PsJN]
Length = 645
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 98/643 (15%), Positives = 224/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + + ++V+ G+ S+ V SV K+ + + ++
Sbjct: 1 MLDFFRNHKR-LMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAM 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L Q +G + + + ++LD L+ L + + L A V +
Sbjct: 60 RQQLDRARQMLGAQFDMKSFDTPERRAQMLDGLIEQRVLADETQRLHLTASDDAVRRVLM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D D + LA +G+ +Y + ++ + G S
Sbjct: 120 SDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKT 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + R V I + R A P++A L +++ +++ + P I Y++
Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNEFATPATATIQYVVM 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S+ +L+ Y+ N Y + ++ K+A A ++ K K
Sbjct: 240 SPATLAASAQPSDADLKKYYDDNIAHYRTDGQVRASHILIAAPKDASAADKAKAKQKAEE 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + LG F + I D KK + +
Sbjct: 300 LLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGKAFDDAVFALKKDEVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ FGY I V+++KP+ T F EVK I+ ++ AS+ +D + +
Sbjct: 360 IVQTDFGYHIVKVTDVKPAVTKPFDEVKDQISKDLKAQLASKAFTDDSEGFTSIVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + + + V + K + + +
Sbjct: 420 SLQPAADKYKLQVQTATVTPQPDPKLAPDSPLNNAKFLAAVFASDATTARNNTQAIDVGG 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + A L+ V V++ V++ E + E+ K
Sbjct: 480 NTLIAARVTDYKAAAVPALDAVKDAVRQKLIAVQSNEAAHKDGVAKLAEFEKSKST---- 535
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
A + +++R D + +S ++ + + + + Y +++V +
Sbjct: 536 -----AGFSSPLKVSRND--AQGVPPAALSAIYKADAQKLPAYVGVDLGDDGYAIYRVNS 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G + + + Q+ + ++ + ++++ V +
Sbjct: 589 VVAGTTVDPQRLAAAQQQIAQVDAQSEAEAYVEAVRARSKVKL 631
>gi|301169728|emb|CBW29329.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Haemophilus
influenzae 10810]
Length = 622
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 103/641 (16%), Positives = 242/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQF---MTQHLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ + + LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + ++ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLNENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
++++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSESKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + ++D+ I + + ++
Sbjct: 582 GLQLLRSHQSELQVQLIQGLRERAKIEINDSFINQDDEAQQ 622
>gi|289627508|ref|ZP_06460462.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289649941|ref|ZP_06481284.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330868371|gb|EGH03080.1| periplasmic folding chaperone [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 627
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 99/640 (15%), Positives = 216/640 (33%), Gaps = 38/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++Q++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+D R ++ D+ L ++ + ++++ + +PE + YI
Sbjct: 180 AQVDAFARLE--KQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+++ +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDEQAKAKIEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L KG+ F LA+E + LG K + D + DS+++L K + +
Sbjct: 298 LAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKG-VYDPAFEDSLYALNKDQ-VSQPVRTD 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + ++ +F +K + ++ +K E K+LE+ + + + +
Sbjct: 356 FGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQPA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + G + A I + S +T+ L + +
Sbjct: 416 QDLGLKVQTTAPFGREGGEGITANRAVI-----QAAFSPEVLEEGSNSNTLELDPETVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ KE + + LE V + ++ +K L+ K G
Sbjct: 471 VRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGLRDGKIPLA--AKQDG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK 580
+ + R + + +F P K P S+V+ ++
Sbjct: 529 RDWKSMEAVTRSQ---EGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLNGVN 585
Query: 581 ---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S +
Sbjct: 586 QAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESNAKIE 625
>gi|239814796|ref|YP_002943706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
S110]
gi|239801373|gb|ACS18440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
S110]
Length = 636
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 96/644 (14%), Positives = 215/644 (33%), Gaps = 47/644 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + RK ++ V +++ F+++G+ G V V Q + +
Sbjct: 1 MFDFFRKYNK-IVMIFLFLLIIPSFVLFGVERY-QGSGGEVKVARVDGQNITRPEWDAQH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E I Q+ V+ S + L+ +V L + R+ A
Sbjct: 59 RLETDRIRQQS-PNVDPTLLESDVMRYATLERMVRDRVLAAAAAKSNVTISEERLSRIFA 117
Query: 121 RS---PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ F D KF + F R ++Y L+ ++ G
Sbjct: 118 QDTGLAAFRTPDGKFDRESFQRVTGR---TPEQYEASMRAELATQQMLLGVTGTAFTPPA 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L +++ R + + + S+A + +++ + ++APE I Y++
Sbjct: 175 LAAATINAFYDRREIQVARFSPESFASKVTVSDADVEAYYKAHTAQFQAPEQASIEYLVL 234
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ +K I ++ +L+ YE+N ++ + E R ++ A A ++ K K
Sbjct: 235 DLEAAKKNISVNEADLKTYYEQNTARFGTKEERRASHILITAPASAPAADRAKAKAKAEQ 294
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + L ++ + + KKGD +
Sbjct: 295 LLAEVKKAPATFADVARKNSQDPGSAEKGGDLDFVTRGAMVKP--FEDALFALKKGDISD 352
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGT 399
V+ FGY I +++IKP+ F++V+ I N++R +A+++ + + +
Sbjct: 353 VVETEFGYHIIRLADIKPAVVPPFEQVRATIENEVRSQQATQEFAKAAETFTDAVYQQPD 412
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ + + ++ V G D + +
Sbjct: 413 SLKPAAEKLRLTIQTASNVSRT--PPPGAAGVLANRNFLNALFAADSLDRKQNTEAIEVG 470
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
++ + PA L EV ++ T + A ++ + ++
Sbjct: 471 SNQLAAGRVTQYTPAHPMPLAEVKDKIRAQLITERAAVMAKAEGEAKLAAWT-------- 522
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
K GA+ ++R + + + I + + Y V +VT
Sbjct: 523 -AKADGATFGAPVTVSRREAQAQ--PLAVIDAALRADASKLPALVGVDLGTQGYAVVRVT 579
Query: 578 NS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
++ + + + Q + + LK ++ +
Sbjct: 580 KVVPRTPSAPEQTQQENAQVGQSVAAAEEVAYYNLLKERFKAEI 623
>gi|302187980|ref|ZP_07264653.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
syringae 642]
Length = 627
Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats.
Identities = 97/640 (15%), Positives = 221/640 (34%), Gaps = 38/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ +SQ++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
++ R ++ D+ L + ++ + ++++ + +PE + YI
Sbjct: 180 AQVEAFARLE--KQTRDFASLTLPADTSAVKVTDDEVKAHYDEHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+++ +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNEEQAKAKIEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L KG+ F LA+E + LG K + D + +++++L K + +
Sbjct: 298 LAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKG-VYDPAFEEALYALNKDQ-VSQPVRTD 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + ++ +F +K + N ++ +K E K+LE+ + + + +
Sbjct: 356 FGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFESSDLSQPA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + G + A I + + +T+ L + +
Sbjct: 416 QDLGLKVQTTAPFGREGGEGLTANRAVI-----QAAFSPEVLEEGANSNTLELDPETVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ KE + + LE V + ++ + +K L+ K G
Sbjct: 471 VRSKEHLQPQQLPLESVASSIRAQLVKEHASAAAKTKGEALLAGLRDGKIPLA--AKQEG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK 580
+ R + + +F P K P + S+V+ ++
Sbjct: 529 RDWKMMEAVTRSQ---EGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSFVIVRLNGVN 585
Query: 581 ---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S+ +
Sbjct: 586 QAAAPTDAEKAQYRRFLASREGQQDFAAYRAQLESKAKIE 625
>gi|254448800|ref|ZP_05062257.1| peptidyl-prolyl cis-trans isomerase D, putative [gamma
proteobacterium HTCC5015]
gi|198261641|gb|EDY85929.1| peptidyl-prolyl cis-trans isomerase D, putative [gamma
proteobacterium HTCC5015]
Length = 643
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 120/652 (18%), Positives = 252/652 (38%), Gaps = 39/652 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML IR+ VA + + L + ++ L D + + G ++ ++V + V +
Sbjct: 1 MLLAIREKVTGAVALVIIAALGLFMVVPMLYDYV-AGMGDNSAITVDGESVSIQQYNQRL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
Q ++Q G + + L K+ D + +Q + G + I
Sbjct: 60 SQNRQRLTQAFGGELPESFGDQL-LAKRTTDQFIQQLLQEQATLNDGYAISDEDLVRVIQ 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P F D +F + + +L G + Y TK + + L+
Sbjct: 119 EAPQFQT-DGQFDPEAYKRQLRSIGYSPALYEQTMTKRFVQGQFQEGITQTAFVAPGQLE 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + R ++YI + + + S+A + +FE +++ + PE + Y+ +
Sbjct: 178 QMAALMHQERDIEYIAFSGEAFRSDIELSDAEIEAYFEDHREQFMHPEKVSVEYVAINFE 237
Query: 241 EKEKKIEISNDELQAEYEK--NKEKYFSPEIRTVEQLVFPNQKEADEA------------ 286
+ + +E++ +E+Q EY+ + +Y S E R+ ++F +ADE
Sbjct: 238 DYKNGLEVTEEEVQQEYQAGVDSGRYTSQEERSASHILFAFDSDADEDARAAVRSEAEQV 297
Query: 287 FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ +G F LA+E SLG K + ++F+L ++G + ++
Sbjct: 298 LTQINEGGDFSALAKEHSDDPGSAEQGGSLGVVQKGVMV-PEFEQAVFNLPEEGAVSDLV 356
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSM 401
FGY I + P+ F E+ I ++ KA + D + S+
Sbjct: 357 ESQFGYHIIRLDEYTPAEAQPFDEISAKIRQELLDNKARLRYDSDIDEMSNLAFESSGSL 416
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
+ +++ + G+ +A+ P + F+ DD + T+ L +G
Sbjct: 417 EPVAQALSLELQSSDWFTRTS----GEGIASDPVVREAAFKTDILDDGYN-SGTLDLSNG 471
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ +++KE P ++ LEE +DV+ T AE++S+ +Q + + G++ I
Sbjct: 472 DVVVLRVKEHEPRHEKTLEEARSDVESALMTKTVAEQLSAAQSQAAEAW-RSGESGEAIA 530
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE---NGLSYVVFKVTN 578
+ LG T + R + E I F + + +G V K+ +
Sbjct: 531 ERLGGEFNTALGVTRKNPEQ--LPRGLIQVTFKMAMGEAEASVANANLSGEDRAVVKLLD 588
Query: 579 SKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ G E+++ L +V+ L+ + + ++ +LI +
Sbjct: 589 KRPGQWEQLTQSEQEQIKQQLLASKGGMDYAAVLNQLREEADIDINQSLIDQ 640
>gi|254514389|ref|ZP_05126450.1| peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium
NOR5-3]
gi|219676632|gb|EED32997.1| peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium
NOR5-3]
Length = 622
Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats.
Identities = 97/636 (15%), Positives = 230/636 (36%), Gaps = 33/636 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++ VAK+ + ++ + F I+G+ LFS GS+ V V +++ +
Sbjct: 1 MLQDIRANAQGTVAKVIIGLIVISFSIFGIESLLFSG-GSNGVAEVNGEEISPFALQQEL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +G + + ++ L+ L+ + Q +D+GL + +
Sbjct: 60 SVQQRRLLSILGEDADPALLDQAQMSQQALETLIQREIIKQAAKDMGLNTSDQAIADIVG 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F D +FS D+F LA G + + + + + G + LD
Sbjct: 120 SMEQFQ-IDGQFSPDLFQGALASAGFTPALFRERLAEDVEIGQLRAGVAGSDFSTEAELD 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
A E R V YI L A + S+ + ++++ + +++ E + ++
Sbjct: 179 LAASIALEGRDVRYISLPLLDFIASVELSDEAVETFYQQNPERFQSEE--SVILEYLELG 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF-----QSLKKGKK 295
+ ++ + L+ E+E ++++ V ++ ++L +G
Sbjct: 237 IDAYRKDVDEERLREEFELVRDEFELSAEARVSHILIEGSDADRAERIAAAQKALSEGMS 296
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F A E LG + + P+ + + G+ + + G +
Sbjct: 297 FADAAAEFSDDIGSAQDGGDLGYTAGDTFPEA--MEEAIAALGVGEQSAAVETEAGTHLL 354
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
V++ + +VSF++V ++ ++++ A+ + D +RL + ++ + ++
Sbjct: 355 LVTDRREGSSVSFEDVAAELEDRIQSRDAAADLLVDVERLRDIAFNAADLNAPAEALELE 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
V ++ A + + + L ++ +++ E
Sbjct: 415 VQTSEPVSRNQQEGLFARPAL-----RQAAFSEDVFEAGHNSEVIELNPEQFVLLRVAER 469
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
PA + LE+V ++ + + E +++A +L+ S+ G + G
Sbjct: 470 RPAALKPLEDVRAAIEVELREQLAKEAAAAQAMELMAALSQ-GSTVEEAANAAGLQWQVE 528
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG----- 582
R ++F+ P + E+ + + ++ G
Sbjct: 529 LGARRNSRS---LPGVVRERLFAMPAPEDGSPTREIVDEDPDATYLVELARVSSGNPADM 585
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
PVQE++ + L L+ + V V
Sbjct: 586 PVQERELLRQRIAGETGGILQQQFETGLRERAEVIV 621
>gi|145637308|ref|ZP_01792969.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae PittHH]
gi|145269560|gb|EDK09502.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae PittHH]
Length = 622
Score = 221 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 105/641 (16%), Positives = 243/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIINLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQF---MTQRLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ ++ + LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKSFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + ++D+ I + + ++
Sbjct: 582 AMQLLRSHQSELQVQLIQGLRERAKIEINDSFINQDDEAQQ 622
>gi|303253594|ref|ZP_07339732.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245913|ref|ZP_07527996.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307247999|ref|ZP_07530028.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307254886|ref|ZP_07536708.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307257049|ref|ZP_07538824.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307259327|ref|ZP_07541054.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|302647514|gb|EFL77732.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306853132|gb|EFM85354.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306855397|gb|EFM87571.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306862127|gb|EFM94099.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306864420|gb|EFM96328.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306866563|gb|EFM98424.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 625
Score = 221 bits (561), Expect = 3e-55, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 230/639 (35%), Gaps = 32/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + ++ V KI ++ + F+I G+ L G + V V ++ +F +
Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGLV--GGDTAAVKVNGTEITQQAFNAAK 58
Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++
Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI SP+F +D KFS+D++ L G++ Y + + + + +G
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNV 175
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + R V + S L ++++ +K PE + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYV 235
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ +++++++++ YEKNK Y + + N+ +A + +K G
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +LA+ + LG P ++ + + G + V++ Y I
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPKA--FEAAAASLQDGQVSAVVNVDGAYHII 353
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
V K + ++VK I +R + + + S++ +++ +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + R G++ P ++ ++ +
Sbjct: 414 KVQKSAQFTQQNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMFV--RVSD 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
R + LEE +V + K K + + +KA + V ++ K+ S
Sbjct: 472 YQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNEG--------KDEKVSFGN 523
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ E++ VFS P V ++ + G ++E
Sbjct: 524 AQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDGSLEEF 581
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
Q L + ++ L+++ S+ V+ + + +
Sbjct: 582 KPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620
>gi|163736555|ref|ZP_02143974.1| putative peptidyl-prolyl cis-trans isomerse D [Phaeobacter
gallaeciensis BS107]
gi|161390425|gb|EDQ14775.1| putative peptidyl-prolyl cis-trans isomerse D [Phaeobacter
gallaeciensis BS107]
Length = 613
Score = 221 bits (561), Expect = 4e-55, Method: Composition-based stats.
Identities = 117/633 (18%), Positives = 246/633 (38%), Gaps = 32/633 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M ++K S T+V I + +L + +G A+ S+V VG Q+V +
Sbjct: 1 MAAGMKKLSNTFV-WILMGMLIIGLAGFG---AVNFTGSVSSVAVVGDQEVSVDDYAREL 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++E + + G V + ++GLD+ +L L++ A LDQ D+GL ++ EI+
Sbjct: 57 QREQRALEAQTGQRVPIAQMTALGLDRVVLGRLIAIAALDQESSDLGLSIGDQNLFDEIS 116
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
R P F F+ D + L G+ E + + +RT V G + G + L D
Sbjct: 117 RIPAFQDGTGAFNRDTYQYALDNIGLTEAAFEADLRRESARTLVQGAIMAGTEMPDTLRD 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVP-AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ RS D++ ++ + +PS L +++ D + P K I+Y
Sbjct: 177 TLTSYVGARRSFDWLTVSEESIALTAVEPSEDELRTFYDANIDQFTLPRTKVITYAALRP 236
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAFQSLKKGKKFIQ 298
+IEI L+ + +Y PE R VE+LVF N+ Q G F
Sbjct: 237 DALVDEIEIDAAALEQLFNDRSAEYQVPERRLVERLVFANRDAADSAKAQLDINGTTFDA 296
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
L ++G SL D+ LG + + A+ G+ + G + ++
Sbjct: 297 LVADRGLSLQDVDLGDVTMGDLASAGQ---DVFAAQVGNVVGPLDSDLGPALFRINGRLE 353
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ S ++VK ++ ++ +A ++ + + + LA G +++E+ + +L +
Sbjct: 354 ARVTSLEDVKDELRAELATDRARRLIETRSEEINDMLAGGATLEELIDEPGM---ELGKI 410
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D+ G + L DGS +++ E + R
Sbjct: 411 DWHNGSTDGI------AAYDGFRQAASAVTAEDFPEVAFLEDGSLFAIRLDEELEPRPEP 464
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
+ ++ W++ + + + ++A +L + ++ + G L + + R
Sbjct: 465 FADAQDKLRAAWQSKRLQDALEAEAERL-AGMLRNDEDLPE-----GIELTSETGLTRAA 518
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS-----KVGPVQEKDKFISY 593
+ +++VF V + + + VV ++T + + +
Sbjct: 519 YIDAA-PQPLMARVFDLAEGDV--AVVSDDTATVVVRLTETLPVADTPEMTALAEAMGTQ 575
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L Q + + L ++ + +++ + + +
Sbjct: 576 LDQALAQALFEAFVQDSQTRAAPRIDPQALNAV 608
>gi|303251064|ref|ZP_07337250.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307252639|ref|ZP_07534532.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302650074|gb|EFL80244.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306859884|gb|EFM91904.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 625
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 230/639 (35%), Gaps = 32/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + ++ V KI ++ + F+I G+ L G + V V ++ +F +
Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGLV--GGDTAAVKVNGTEITQQAFNAAK 58
Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++
Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI SP+F +D KFS+D++ L G++ Y + + + + +G
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSEFNV 175
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + R V + S L ++++ +K PE + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQTASAEELQKYYDAHKSELIEPEKLMVEYV 235
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ +++++++++ YEKNK Y + + N+ +A + +K G
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRSAHIQLANETDAKAVAEQVKNGAD 295
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +LA+ + LG P ++ + + G + V++ Y I
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPKA--FEAAAASLQDGQVSAVVNVDGAYHII 353
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
V K + ++VK I +R + + + S++ +++ +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + R G++ P ++ ++ +
Sbjct: 414 KVQKSAQFTQQNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMFV--RVSD 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
R + LEE +V + K K + + +KA + V ++ K+ S
Sbjct: 472 YQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNEG--------KDEKVSFGN 523
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ E++ VFS P V ++ + G ++E
Sbjct: 524 AQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDGSLEEF 581
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
Q L + ++ L+++ S+ V+ + + +
Sbjct: 582 KPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620
>gi|254486655|ref|ZP_05099860.1| putative peptidyl-prolyl cis-trans isomerse [Roseobacter sp.
GAI101]
gi|214043524|gb|EEB84162.1| putative peptidyl-prolyl cis-trans isomerse [Roseobacter sp.
GAI101]
Length = 614
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 119/620 (19%), Positives = 256/620 (41%), Gaps = 30/620 (4%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
I + +L + +G A+ S++ +VG + + + +Q++ I + G
Sbjct: 13 VWILMGMLILGLGGFG---AVNFNGNVSSIGTVGDKDISVDQYARELQQQIRAIEGQTGE 69
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
++ ++A+++GLD+ +L LV LD ++G+ + I P F G D F
Sbjct: 70 TLSFQQAQAIGLDRAVLQRLVRLRALDNETAEMGISIGDENLRERIIDIPSFQGIDGNFD 129
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + L + G++E E+ + +R+ + G GG+ ++ F E RS
Sbjct: 130 REGYRFALQQAGLSEAEFETSLREEAARSLLQGAISGGVTMPDVYAQTLVNFVGEKRSFT 189
Query: 194 YIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ L + A P++A L +++ +N+ P K I+YI+ + ++EI+ DE
Sbjct: 190 WAALTEDDLQTPLAAPTDADLQAFYDANPENFMLPASKSITYIILTPQDVLDEVEITQDE 249
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDIS 311
L+ Y+ + PE R VE+LVFPN++ A+ A +L+ G F L +++G +L DI
Sbjct: 250 LRKAYDDRAADFIQPERRLVERLVFPNEEAANMAAAALEVSGTTFDALVQDRGLTLEDID 309
Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
+G S+ + A+ GD + + G + V+ I PS +F+E +
Sbjct: 310 MGDVSRLELGAAG---EAVFAAEAGDVVGPLPSNLGPALFRVNGILPSLNTTFEEASPAL 366
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
+ +A+ V+ + L++ LA G ++++++ K+ + + +
Sbjct: 367 QQDLAGDRAARLVEVRAQELDDQLAGGATLEQLAEETKMTLGTTEWTADSDQGI------ 420
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
+ L DGS +++ + P R E+ V W
Sbjct: 421 ---AAYESFRAAAAALTDGDFPKIDQLEDGSVFALRLDGTKPERPNPFEDARASVAAAWT 477
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ + ++++A + + G +F D+ G + + R + +++
Sbjct: 478 ADQLLQALTAQA-ETAQSALEGGSDFADL----GLTPTDQQNLTREAVISGA-PDGLMTE 531
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-----DKFISYLTQMMNKDLLDSV 606
VF ++ + S + +V + E+ D+ + L Q +++D+
Sbjct: 532 VFDAAPGDIRTIAGTD--SVAILRVDSITAAEESEQTRQLLDQLTTQLNQQLSQDVFALY 589
Query: 607 IAYLKSQYSVTVHDNLIQRY 626
+ + + + + I
Sbjct: 590 SSDVVRRTAPMIDQQAINAV 609
>gi|260580093|ref|ZP_05847923.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae RdAW]
gi|260093377|gb|EEW77310.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae RdAW]
Length = 622
Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats.
Identities = 106/641 (16%), Positives = 242/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQF---MTQHLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ + + LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + V+D+ I + + ++
Sbjct: 582 AMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQDDEAQQ 622
>gi|260433616|ref|ZP_05787587.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417444|gb|EEX10703.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 613
Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats.
Identities = 128/606 (21%), Positives = 252/606 (41%), Gaps = 28/606 (4%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
G S TV VG + + ++ ++E+ + + G + +AR +GLD+
Sbjct: 25 AGFGAVNLSG-TVRTVAQVGDEVITVDAYARELQREIRAVEAQTGQPLQMSQARDLGLDQ 83
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
+ L LV+ A LD + +G+ + EI R F G D F + + +L + G+
Sbjct: 84 RALSRLVALAALDNEVAQLGISVGDENLQKEILRIQAFQGADGSFDREAYRFQLEQIGMT 143
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA- 206
E E+ + K +RT V G + G+ +L D + RS L+ + A
Sbjct: 144 EAEFEEDLRKETARTIVQGAIMNGIEMPAVLTDTLADYVQARRSFTVATLSADALDAPVP 203
Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
+P++A + ++E D + P K+I+Y + + +E+ D L+ Y++ KE+Y
Sbjct: 204 EPTDADIQAFYEANTDRFTLPRTKKITYAVLSPAMLQDTVEVDEDALRRLYDQRKEQYQQ 263
Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
PE R VE+LV+P++ EA EA L+ G F QL + LSD+ LG +++ + + +
Sbjct: 264 PERRLVERLVYPSEAEATEAKAQLEVGGVDFEQLVRARELELSDVDLGDVTRDDLGEAA- 322
Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
A+ GD + +FG + V+ V+F E + ++ ++ +A ++
Sbjct: 323 --DAVFAAEVGDVVGPLPSAFGPALFRVNGTLAEHNVTFDEAEPELREELAAERARRVIE 380
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + LA G +++E++ ++L +D+ + +
Sbjct: 381 SQAEEYNDMLAGGATLEELAAE---TEMELGQIDWTAQTDEDI------AAYDAFRSAAQ 431
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
L DGS +++ E +P R LE V + WK + + + KAN
Sbjct: 432 AVGEGDFPEIGFLEDGSVFALRLDEELPPRPEPLESARDRVIEAWKQEEIGKALLEKANT 491
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+V + EG G N + R + D ++QVF ++ P
Sbjct: 492 VVTSLAVEGD-----FAATGLPFRVENALTRTAFLDD-VPGDFMTQVFEMEPGELRVIPG 545
Query: 566 ENGLSYVVFKVTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ + + ++ + KD + L Q + +++ D+ + +++ T+
Sbjct: 546 Q--GAAFIVRLDEVLPPAETDEQRQMKDAVAAQLNQALAQNIFDAYVRDAQTRARPTLDQ 603
Query: 621 NLIQRY 626
+
Sbjct: 604 RALNAV 609
>gi|21241842|ref|NP_641424.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
citri str. 306]
gi|21107222|gb|AAM35960.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
citri str. 306]
Length = 656
Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats.
Identities = 103/670 (15%), Positives = 227/670 (33%), Gaps = 61/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPAWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRTRFEQARMQERQRQGEKFDPRSFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA P F D KFS D + + LA+ ++
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQV-DGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L A S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATTSEFERLLKLMGETRDVELAMLPPPAADAAP-VSDAQIKQWYD 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + L+ YE K ++ PE R ++
Sbjct: 238 GHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297
Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+ A A ++ + G F LA+ + LG K +
Sbjct: 298 AGTDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K G+ I FGY + + +K SF++V+ +A + A +
Sbjct: 358 --FEDALFSMKAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L + A +
Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRSDASGVAANPAVL-----RAAF 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + + +++ + L++V V + + + ++
Sbjct: 471 SETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAAAA 530
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A+ L+ K G+ + + + + + R +FS P
Sbjct: 531 ADALLARVQK-GETLQALADSEKLQVQPIPGLPRTAPIPT---PAANRAIFSAPRPTEGK 586
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ +G + VF ++ + G P +++ L+Q+ + + + ++ +
Sbjct: 587 PSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMRKR 646
Query: 614 YSVTVHDNLI 623
Y + + + +
Sbjct: 647 YKIQIEEAQL 656
>gi|71737764|ref|YP_273939.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558317|gb|AAZ37528.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 627
Score = 220 bits (560), Expect = 5e-55, Method: Composition-based stats.
Identities = 99/640 (15%), Positives = 218/640 (34%), Gaps = 38/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++Q++G +S L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLAQQLGKDFDSAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+D R ++ D+ L ++ + ++++ + +PE + YI
Sbjct: 180 AQVDAFARLE--KQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+++ +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDEQAKAKIEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L KG+ F LA+E + LG K + D + D++++L K + +
Sbjct: 298 LAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKG-VYDPAFEDTLYALNKDQ-VSQPVRTD 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + ++ +F +K + ++ +K E K+LE+ + + + +
Sbjct: 356 FGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQPA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + G + A I + S +T+ L + +
Sbjct: 416 QDLGLKVQTTAPFGREGGEGITANRAVI-----QAAFSPEVLEEGSNSNTLELDPETVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ KE + + LE V + ++ +K L+ K G
Sbjct: 471 VRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGLRDGKIPLA--AKQDG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK 580
+ + R + + +F P K P S+V+ ++
Sbjct: 529 RDWKSMEAVTRSQ---EGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLNGVN 585
Query: 581 ---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S+ +
Sbjct: 586 QAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625
>gi|284006425|emb|CBA71661.1| peptidyl-prolyl cis-trans isomerase D [Arsenophonus nasoniae]
Length = 623
Score = 220 bits (559), Expect = 5e-55, Method: Composition-based stats.
Identities = 109/632 (17%), Positives = 245/632 (38%), Gaps = 23/632 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ + F++ G+ L S+ V V + ++
Sbjct: 1 MMDNLRTAANSLVLKIVFVIIILSFVLTGVGSYLI-GGSSNHVAKVNGTAISQVQLQQAF 59
Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+QE ++ +++G S L ++ L+ L+ L+Q+ +GL A +V
Sbjct: 60 QQEKQVLQERLGDQFAEIASSEQGMQMLRRQALERLIGVTLLNQYSNQLGLTASDNQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+I P+F + F + + + L++ +N + + L + M++
Sbjct: 120 DIYNMPIFQTDGH-FDSEKYRTILSQHNVNADDLAQEIRQNLINRQLSKMYITDEFVLPE 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V L+ + + ++ L ++ +++++ +PE ++SYI
Sbjct: 179 EVKSYAQLLLQQREVKTATLSLANYQSKQTVTDKELQDYYNAHQNSFISPEQVQVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + + + + ++EL+ YE+N + P + + P +KEAD +SL G F
Sbjct: 239 DAASQRENVAVKDEELKNYYEQNIANFTQPAQKHYSMIQLPTEKEADSVVKSLAGGADFK 298
Query: 298 QLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
QL E+ S + G+ +L KKG + VI + Y+I + +I
Sbjct: 299 QLVAEKSTDKFSAANHGALGWMEATSTPSEIIAANLTKKGQISAVIKSASNYIIFRLDDI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP FQ VK +IAN ++ KA + + ++ EK I
Sbjct: 359 KPEVVKPFQSVKTEIANTLKNEKAINAFYSLQQTASRA--AMDDNESLTAAEKATGIKAV 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKESIPA 474
+ ++ +E+ + + + + + +++++ P
Sbjct: 417 TTGWFSRNNLPEEIRFDKVADTIFNGNLVDKNGPTGINSDVINVDGDRAFVIRVEKYKPQ 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ +EV V + K K +E+ ++ N+L+ + LG + I
Sbjct: 477 VTQPFDEVKKTVAELVKLNKATKEMEAEGNKLLTALKQGAG--EAALAKLGINFGDAKII 534
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSK--VGPVQEKD 588
R + + + +F P+ + + V+ ++ +E
Sbjct: 535 ERFEQNDV-----LVEPIFQMPIPKENTPTYFSTKDAKNNLVIIQLIKVTQGQPTDEELK 589
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
F ++ +++S++ L+ V +
Sbjct: 590 VFSQRYKMILGNVMMESLMLNLRDSAKVDLGR 621
>gi|325982743|ref|YP_004295145.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
AL212]
gi|325532262|gb|ADZ26983.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
AL212]
Length = 627
Score = 220 bits (559), Expect = 6e-55, Method: Composition-based stats.
Identities = 88/646 (13%), Positives = 235/646 (36%), Gaps = 46/646 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M +++ + V ++ L + +PF+ WG+ + V V +++ + +
Sbjct: 1 MFDLV--NRKKRVVQVILGLAVLPFMFWGVESY-RNDGSEGYVAVVEGEEISRREYEQAL 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +G +S + + +L+ L+ L Q G ++ I
Sbjct: 58 RDHHERMRAMLGANFDSAMLDTSEVRSSVLERLIQQRLLYQEAVKNGFVVLDSQLIKTIQ 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F K+NKFS + L +G+ + L ++ + +
Sbjct: 118 DVQAFQ-KNNKFSKQQYEELLRNQGLTPVIFESRVRNELLLQQLLDGYSENAITPRTTTE 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R + + + A P A ++ ++E++K ++ PE ++ Y++ +
Sbjct: 177 RVQYLSEVRREISQSKITPDQFLSQAIPEEADISAYYEQHKTDFDLPERAKVEYLVLSLE 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290
+ K +S++ + + +++ ++ E R ++ +A E + +
Sbjct: 237 KVAKNEFVSDEAINTYFLEHQSEFGQSEERKASHILISVSPDAPEEEKQMAREKAKRILE 296
Query: 291 ---KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+ +F ++A+E LG F++ + + + + + ++
Sbjct: 297 QVKQNPDQFAEIAKEHSDDPGSAMRGGDLGFFARGVMVKS--FEDEIFSMQLDEISDIVE 354
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM-D 402
FG I ++ IK +EV++ I N +++ E + +
Sbjct: 355 TDFGLHIIKLTAIKEERHPDLEEVREQIENTLKVEMVESVFGEIVEDFSNVVYEQGESLQ 414
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460
+ + +++ + K+ I E LL +F + + +T + +
Sbjct: 415 AAAEKFELIIEKSDWITKDSKEPA------ILANENLLSAIFSDEVISNNRNTEAIEVNP 468
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+++ +I E PA + L V ++ + K ++ + ++ + G+ D+
Sbjct: 469 DTFVSARIIEYKPATSQSLAVVKDEIVEKLKKEMAVSMAVAEGQEKLVRL-QAGEVLDDV 527
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTN 578
I+ M + ++ + +F V+ + + + + +++
Sbjct: 528 A------WDDAQLISYMQP--QGLDHEVLRAIFRAEVDELPVYVGAVKPEGGFNLIRISK 579
Query: 579 SKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
EK + F L QM+ ++ + S +A ++ +Y V + N
Sbjct: 580 VIEPDSDEKTPPENFAKQLQQMITQEEISSYLAAIRQRYDVKIIQN 625
>gi|298486267|ref|ZP_07004330.1| Peptidyl-prolyl cis-trans isomerase ppiD [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|298159274|gb|EFI00332.1| Peptidyl-prolyl cis-trans isomerase ppiD [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
Length = 627
Score = 220 bits (559), Expect = 6e-55, Method: Composition-based stats.
Identities = 98/640 (15%), Positives = 216/640 (33%), Gaps = 38/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++Q++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGATDAKFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+D R ++ D+ L ++ + ++++ + +PE + YI
Sbjct: 180 AQVDAFARLE--KQTRDFASLTLPADTTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+++ +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVQVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDEQAKAKIEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L KG+ F LA+E + LG K + D + D++++L K + +
Sbjct: 298 LAKGEDFAALAKEYSQDPGSSSKGGDLGYAGKG-VYDPAFEDTLYALNKDQ-VSQPVRTD 355
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FG+ + + ++ +F +K + ++ +K E K+LE+ + + + +
Sbjct: 356 FGWHLIKLLGVEAPSVPTFASLKDKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQPA 415
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + G + A I + S +T+ L + +
Sbjct: 416 QDLGMKVQTTAPFGREGGEGITANRAVI-----QAAFSPEVLEEGSNSNTLELDPETVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V+ KE + + LE V + ++ +K L+ K G
Sbjct: 471 VRSKEHLQPQQLPLESVASSIRTQLVKEHATAAAKAKGEALLAGLRDGKIPLA--AKQDG 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK 580
+ + R + + +F P K P S+V+ ++
Sbjct: 529 RDWKSMEAVTRSQ---EGVDPQVLQTLFRMPKPDGKGKPEFASITAADGSFVIVRLNGVN 585
Query: 581 ---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S +
Sbjct: 586 QAAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESNAKIE 625
>gi|330963316|gb|EGH63576.1| periplasmic folding chaperone [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 627
Score = 220 bits (559), Expect = 6e-55, Method: Composition-based stats.
Identities = 100/639 (15%), Positives = 225/639 (35%), Gaps = 36/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60
Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++Q++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+D R ++ D+ L P+ ++ + ++++ + +PE + YI
Sbjct: 180 AQVDAFARLE--KQTRDFASLTLPADPSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+ + +D+LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVTVKDDDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDEQAKAKVEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
L KG+ F LA+E + S G F+ + + D + +++++L K + + F
Sbjct: 298 LAKGESFAALAKEFSQDPGSSSKGGDLGFAGKGVYDPAFEEALYALNKDQ-VSQPVRTDF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ + + ++ +F +K+ ++N ++ +K E K+LE+ + + + ++
Sbjct: 357 GWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLEDSAFESSDLTQPAQ 416
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ G + A I + S +T+ L + + V
Sbjct: 417 DLGLKVQTTAPFGREGGEGLTANRAVI-----QAAFSPEVLEEGSNSNTLELDPETVVVV 471
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+ KE + + LE V + ++ +K L+ K G
Sbjct: 472 RSKEHLQPQQLPLESVASSIRAQLVKEHATAAAKTKGEALLAGLRDGKIPLA--AKQDGR 529
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK- 580
+ ++R + + +F P + K P S+V+ ++
Sbjct: 530 DWKSMEAVSRSQ---EGVDPQVLQTLFRMPKPVAKDKPEFASITAADGSFVIVRLNGVNQ 586
Query: 581 --VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S+ +
Sbjct: 587 AAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625
>gi|329123025|ref|ZP_08251596.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
11116]
gi|327471956|gb|EGF17396.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
11116]
Length = 622
Score = 220 bits (559), Expect = 6e-55, Method: Composition-based stats.
Identities = 105/641 (16%), Positives = 242/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQF---MTQHLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ + + LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKFLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + ++ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLNENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + V+D+ I + + ++
Sbjct: 582 AMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQDDEAQQ 622
>gi|30995417|ref|NP_439165.2| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae Rd
KW20]
gi|3183576|sp|P44092|PPID_HAEIN RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
D; AltName: Full=Rotamase D
Length = 622
Score = 220 bits (559), Expect = 6e-55, Method: Composition-based stats.
Identities = 106/641 (16%), Positives = 242/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQF---MTQHLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ + + LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNGKAQQAVKKLSENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + V+D+ I + + ++
Sbjct: 582 AMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQDDEAQQ 622
>gi|145628054|ref|ZP_01783855.1| lipoprotein signal peptidase [Haemophilus influenzae 22.1-21]
gi|144979829|gb|EDJ89488.1| lipoprotein signal peptidase [Haemophilus influenzae 22.1-21]
Length = 622
Score = 220 bits (559), Expect = 6e-55, Method: Composition-based stats.
Identities = 106/641 (16%), Positives = 243/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQF---MTQHLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ + + +LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKAKSLDKISGENGGNLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + V+D+ I + + ++
Sbjct: 582 GMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQDDEAQQ 622
>gi|28870877|ref|NP_793496.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28854126|gb|AAO57191.1| peptidyl-prolyl cis-trans isomerase D, putative [Pseudomonas
syringae pv. tomato str. DC3000]
gi|331019234|gb|EGH99290.1| periplasmic folding chaperone [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 627
Score = 220 bits (559), Expect = 6e-55, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 225/639 (35%), Gaps = 36/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60
Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++Q++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+D R ++ D+ L P+ ++ + ++++ + +PE + YI
Sbjct: 180 AQVDAFARLE--KQTRDFASLTLPADPSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+ + +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVTVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDDQAKAKVEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
L KG+ F LA+E + S G F+ + + D + +++++L K + + F
Sbjct: 298 LAKGEDFAALAKEFSQDPGSSSKGGDLGFAGKGVYDPAFEEALYALNKDQ-VSQPVRTDF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ + + ++ +F +K+ ++N ++ +K E K+LE+ + + + ++
Sbjct: 357 GWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLEDSAFESSDLTQPAQ 416
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ G + A I + S +T+ L + + V
Sbjct: 417 DLGLKVQTTAPFGREGGEGLTANRAVI-----QAAFSPEVLEEGSNSNTLELDPETVLVV 471
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+ KE + + LE V + ++ +K L+ K G
Sbjct: 472 RSKEHLQPQQLPLESVASSIRAQLVKEHATAAAKTKGEALLAGLRDGKIPLA--AKQDGR 529
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK- 580
+ ++R + + +F P + K P S+V+ ++
Sbjct: 530 DWKSMEAVSRSQ---EGVDPQVLQALFRMPKPVAKEKPEFASITAADGSFVIVRLNGVNQ 586
Query: 581 --VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S+ +
Sbjct: 587 AAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625
>gi|213968838|ref|ZP_03396979.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
tomato T1]
gi|301384116|ref|ZP_07232534.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
tomato Max13]
gi|302059522|ref|ZP_07251063.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
tomato K40]
gi|302135027|ref|ZP_07261017.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|213926441|gb|EEB59995.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas syringae pv.
tomato T1]
Length = 627
Score = 220 bits (558), Expect = 7e-55, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 225/639 (35%), Gaps = 36/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60
Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++Q++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+D R ++ D+ L P+ ++ + ++++ + +PE + YI
Sbjct: 180 AQVDAFARLE--KQTRDFASLTLPADPSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+ + +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVTVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDDQAKAKVEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
L KG+ F LA+E + S G F+ + + D + +++++L K + + F
Sbjct: 298 LAKGEDFAALAKEFSQDPGSSSKGGDLGFAGKGVYDPAFEEALYALNKDQ-VSQPVRTDF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ + + ++ +F +K+ ++N ++ +K E K+LE+ + + + ++
Sbjct: 357 GWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLEDSAFESSDLTQPAQ 416
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ G + A I + S +T+ L + + V
Sbjct: 417 DLGLKVQTTAPFGREGGEGLTANRAVI-----QAAFSPEVLEEGSNSNTLELDPETVLVV 471
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+ KE + + LE V + ++ +K L+ K G
Sbjct: 472 RSKEHLQPQQLPLESVASSIRAQLVKEHATAAAKTKGEALLAGLRDGKIPLA--AKQDGR 529
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK- 580
+ ++R + + +F P + K P S+V+ ++
Sbjct: 530 DWKSMEAVSRSQ---EGVDPQVLQALFRMPKPVAKDKPEFASITAADGSFVIVRLNGVNQ 586
Query: 581 --VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S+ +
Sbjct: 587 AAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625
>gi|254463425|ref|ZP_05076841.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacterales
bacterium HTCC2083]
gi|206680014|gb|EDZ44501.1| putative peptidyl-prolyl cis-trans isomerse [Rhodobacteraceae
bacterium HTCC2083]
Length = 615
Score = 220 bits (558), Expect = 7e-55, Method: Composition-based stats.
Identities = 110/628 (17%), Positives = 251/628 (39%), Gaps = 31/628 (4%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
A I L +L V +G ++ +V +VG + + + + +++L
Sbjct: 6 NALSKTFIWILLALLIVGLAGFGATNL---GGNIRSVGAVGDKTISVELYSRTLQEDLRA 62
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
IS + G + A+++G+D++ L +++ LD ++GL ++ +I F
Sbjct: 63 ISAQAGQNIPFSTAQALGVDRQALARVITTRALDHETAELGLSVGDAQLQQQILSMSAFQ 122
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
G + +F + + L G++E E+ + + +RT V G + G + + +
Sbjct: 123 GINGQFDREAYRFTLENAGLSEAEFEETLREEAARTLVQGAILSGNTVPDTYANTLVAYI 182
Query: 187 FENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
E R+ L + +P+ A L ++++ D Y PE K+I+Y L
Sbjct: 183 GERRNATVARLKAEDLATPVAEPTEAQLQTYYDENIDAYTLPETKQITYALLSPDMIADT 242
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADEAFQSLKKGKKFIQLAEEQG 304
+E+ LQ Y++ + ++ PE R +E+LV+ + + Q G F L E++G
Sbjct: 243 VEVDEAMLQTAYDERESEFNKPERRLIERLVYGNDDSASAAKAQLEAGGTTFETLVEDRG 302
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
+L+DI LG + + A+ GD + G + ++ I + SF
Sbjct: 303 LALADIDLGDLDQGALGAAG---ESIFAAETGDVVGPLQSDLGPALFRINGILAAQETSF 359
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
++ + + +++ +A V+ +++ LA G +++++++ +V L +D++ +
Sbjct: 360 EDARAQLRDELAADRARRVVEAQINDIDDLLAGGATLEDLAKETDMV---LGNIDWSSEA 416
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
G +AA + + D P L DG +++ E R + L ++
Sbjct: 417 GDG--IAAYEVFREGAQAITVDDFP----KIEVLEDGGIFAMRLDEVHAPRPQPLAKITE 470
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
V W+T T E + ++A L+ + ++ T ++ R
Sbjct: 471 RVSVGWRTQATLEALRAEAEALLSQI-----TAESDFADVDLEADTLTEVTRTGFVADI- 524
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD------KFISYLTQMM 598
I +F +++ ++ ++ + D + + +
Sbjct: 525 PPAAILALFEAEKG--ASVVVDDVTDVLIVRLDDVLAADEDSDDIQALRTQLNNQAATAV 582
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+DL ++ ++ + + + N +
Sbjct: 583 AQDLFEAYATEIQQRAGIQLDQNALNAV 610
>gi|325518979|gb|EGC98507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
TJI49]
Length = 644
Score = 220 bits (558), Expect = 7e-55, Method: Composition-based stats.
Identities = 100/655 (15%), Positives = 224/655 (34%), Gaps = 37/655 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGGQFDIKAFDTPDHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + L+ +G+ ++Y + L+ + V
Sbjct: 120 SDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + R V +VL A P++A L +++ +K ++ PE I Y+++
Sbjct: 180 LAQHLSELAAQQREVQALVLKTSDYAAKVQPTDAQLAAYYDAHKQSFATPETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ ++ +++ Y+ N + + V + +A A ++ K K
Sbjct: 240 SPAAAAASAQPTDADVKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+G+ +
Sbjct: 300 LLADVKAHPDQFAQIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGEVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G+ I + +KPS F EVK +IA ++ AS+ ++ + +
Sbjct: 360 VVQSDLGFHILKATEVKPSAVKPFAEVKDEIAASLKQQYASKAFSDNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNPKFLAAVFANDSVKNQNNTQAIDVGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ E PA L+ + V++ + AE + E K K+
Sbjct: 480 NTLISARVTEHKPATVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KSTEGF 538
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
S + + +S V+ + + + + Y +++V
Sbjct: 539 AAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIYRVNA 588
Query: 579 SKVGPVQEKDKFI---SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
G + + + Q+ + ++ +A L+ + V ++ + + DGE
Sbjct: 589 VVPGSAVDPQQLAGAQQQMAQVEAQSEGEAYLAALRDRSKVKLYGSTASQSKDGE 643
>gi|166710933|ref|ZP_02242140.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 656
Score = 220 bits (558), Expect = 8e-55, Method: Composition-based stats.
Identities = 100/670 (14%), Positives = 224/670 (33%), Gaps = 61/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q ++ G + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERKRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA F D KFS D + + LA+ ++
Sbjct: 120 LGAEDAGIVIGDATVREYIANIQAFQV-DGKFSPDQYRAALAQGTPPRTPAQFDALVRDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L A S+A + QW++
Sbjct: 179 LQQSVIPQAVADSGFATKSEFERLLKLMGETRDVELAMLPPPA-MDTAPVSDAQIKQWYD 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + L+ YE+ K ++ P+ R ++
Sbjct: 238 GHTQDFRQPEAVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297
Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+ A A ++ G F LA+ + LG K +
Sbjct: 298 AGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K GD I FGY + + +K SF++V+ +A + +
Sbjct: 358 --FEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADTDKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L + A +
Sbjct: 416 FADVSGKLVDHVYKNPTALEPAAKQVGLPVQTLGPFSRSDASGIAANPAVL-----RAAF 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + + +++ + L++V V + + + ++
Sbjct: 471 SETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAAAA 530
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A+ L+ K G+ + + + + + R +FS P
Sbjct: 531 ADALLARVQK-GETLQALAASEKLQVQPIPGLPRTAPIPT---PAANRAIFSAPRPTEGK 586
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+G + VF ++ + G P +++ L+Q+ + + + ++ +
Sbjct: 587 PSFGKVELDGGRFAVFAISKATPGNLKQMPAEQQTMLREQLSQIDGNNAAQAYVKQMRKR 646
Query: 614 YSVTVHDNLI 623
Y + + + +
Sbjct: 647 YKIQIEEAQL 656
>gi|229843938|ref|ZP_04464079.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 6P18H1]
gi|229812932|gb|EEP48620.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae 6P18H1]
Length = 622
Score = 220 bits (558), Expect = 8e-55, Method: Composition-based stats.
Identities = 107/641 (16%), Positives = 242/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + V+K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQH---LAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ + + LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + V+D+ I + + ++
Sbjct: 582 GMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQDDEAQQ 622
>gi|323526043|ref|YP_004228196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1001]
gi|323383045|gb|ADX55136.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1001]
Length = 646
Score = 220 bits (558), Expect = 8e-55, Method: Composition-based stats.
Identities = 99/643 (15%), Positives = 225/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + + ++V+ G+ S+ V SV K+ + + N+
Sbjct: 1 MLDFFRNHKR-LMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDNAM 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L Q +G + + + ++LD L+ L + + L A V +
Sbjct: 60 RQQLDRARQMLGAQFDIKAFDTPERRSEMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D D + LA +G+ +Y + ++ + G S
Sbjct: 120 NDPVISSLKKPDGSIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKT 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + R V I + R A P++A L +++ +++++ P I Y++
Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ S+ +L+ Y+ N Y + ++ K+A A ++ K K
Sbjct: 240 SPATLAASVQPSDADLKKYYDDNIAHYRTEGQVRASHILIAAPKDASPADKAKAKQKAEE 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + LG F + I D KK + +
Sbjct: 300 LLAQVKAHPDQFAQIAQQNSQDPGSAAKGGDLGYFGRGMIAGGQAFDDAVFALKKDEVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ FGY I V+++KP+ T F EVK IA ++ AS+ +D + +
Sbjct: 360 IVQTDFGYHIVKVTDVKPAVTRPFDEVKDQIARDLKTQLASKAFSDDSEGFTSIVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + + + V + K + + + +
Sbjct: 420 SLQPAADKYKLQVQTATVTPQPDPKLPPDSPLNNAKFLAAVFANDSVNARNNTQAIDVGG 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + + + PA L+ + V++ V++ E + E+ K
Sbjct: 480 NTLIAAHVTDYKPAAVPPLDAIKDAVRQKVIAVQSDEAAHKDGLAKLAEFQKSKAT---- 535
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
+ +++R D + +S ++ + + + + Y +++V
Sbjct: 536 -----TGFSSPLKVSRND--AQGVPPAALSAIYKADAQKLPAYVGVDLGDDGYAIYRVNA 588
Query: 579 SKVGPVQEKDKFISYLTQMM---NKDLLDSVIAYLKSQYSVTV 618
+ + + Q+ ++ ++ + L+++ V +
Sbjct: 589 VVAAAPVDPQRLAAAQQQIAQVESQSETEAYVKALRARSKVKL 631
>gi|145640678|ref|ZP_01796261.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021]
gi|145274604|gb|EDK14467.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae
22.4-21]
Length = 622
Score = 220 bits (558), Expect = 8e-55, Method: Composition-based stats.
Identities = 106/641 (16%), Positives = 242/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQF---MTQHLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ + + LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKSFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + V+D+ I + + ++
Sbjct: 582 GMQLLRSHQSELQIQLIQGLRERAKIEVNDSFINQDDEAQQ 622
>gi|296116178|ref|ZP_06834796.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter hansenii
ATCC 23769]
gi|295977284|gb|EFG84044.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter hansenii
ATCC 23769]
Length = 639
Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats.
Identities = 118/631 (18%), Positives = 232/631 (36%), Gaps = 16/631 (2%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFINSWKQE 63
R +WV ++ + + F+ F+ WG+ D L ++ V VG + ++ + + E
Sbjct: 3 RIFVDSWVGRVIVGLFFLTFVGWGVGDVLMNIGTERADVVARVGPDPILVPAYEQALRTE 62
Query: 64 LGMISQKIGFVVNSER--ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ I+Q++ S+ A + +++L L+ + + GL V EI
Sbjct: 63 MPQIAQQMHLDDPSQIPAATREQIAQQVLQRLILQDEVALAARNHGLLVPDSAVRAEIFA 122
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F K+ KF F +RL G+ E I+ + ++ G +LL +
Sbjct: 123 IPAFQDKNGKFDRTTFNNRLRSSGMTEARLIELVRAEQASKALMEPIRNGAGAPDLLTRR 182
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ R VD + + A PS+A ++ + + APEY+ ++
Sbjct: 183 IFDLEAQTRKVDIVRVP-FAAQTPAAPSDAQARRFHTNHPWLFEAPEYRHARIVVLSPET 241
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
+ + I + +L YE+ +++ +PE R+V+ + PN+ A E + + G + + +
Sbjct: 242 VARSMTIPDADLHHMYEQQAQRFNTPETRSVQVITAPNEARARELLTTWQGGASWDAMQK 301
Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
GK + + + IP L A +P IH G+ I V ++ P+
Sbjct: 302 SAGKDSASVEMDDIRISSIPSQELGR-QIFNAPSDTVSPPIHTDGGWAIFRVLHVTPAHI 360
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
F+ + + Q + ++ + ++L++ +A G S + VD
Sbjct: 361 SDFESARPALQAQALAERVQAQIGDRVQKLQDAIAGGGLDSIPSELGAVAV--AGNVDAH 418
Query: 422 GKDVKGKEVAAIPYK--EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
G +G Q + S + P+G++ V + PAR
Sbjct: 419 GMTQEGTPAPIPGSDAVRQAIVARVFSQPKGSSPELLQAPEGTWYAVSVDGVTPARPLSY 478
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
E+ V+ W A L + G I + L+ + +R +
Sbjct: 479 EDSAQKVRDAWMDDARRHAADQTATTLYTQAQTMG-GLAHIQPAV-PDLVHSTPFSR-AH 535
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQ 596
+ +D F +G YV S P ++ D+ + LTQ
Sbjct: 536 DVTEVPHDIAEIAFRLDHTGQSLMVEADGAFYVATLTDISTPDPASQRMLFDRIRTTLTQ 595
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ D+ S L+S + + I +
Sbjct: 596 AVADDVEMSYAQALQSIVKPKPNPSAISAVM 626
>gi|94310820|ref|YP_584030.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
metallidurans CH34]
gi|93354672|gb|ABF08761.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans
CH34]
Length = 647
Score = 219 bits (557), Expect = 9e-55, Method: Composition-based stats.
Identities = 102/644 (15%), Positives = 211/644 (32%), Gaps = 40/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R R + + ++V F+ +G+ + S V + + N
Sbjct: 1 MLDFVRNNRRLMLLLLLVLVF-PSFVFFGVESYSRFMDSSHDAAKVDGRAITVQEVDNVV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + Q +G + + +LD L+ + + + L ++ I
Sbjct: 60 RDQSERMRQMLGNNYDPRMFEGPAARQAVLDQLIQQRVISEATQKKHLTVSDAQIAAAIQ 119
Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D KF +V LA +G+ ++ LS + G
Sbjct: 120 SIPAIAQLRTADGKFDEKAYVQLLAAQGMTPEQLDARMRFELSTQQLGGAIGTTAFVPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
LLD+ + R V IV+ A P A L ++E + Y PE ++ Y++
Sbjct: 180 LLDRLIAIRDQQRDVQAIVIKPADFTAKVTPDAAALKAYYESHLAAYTMPEQAKVEYLVL 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
I+ D+L++ Y+ N +++ + E R ++ K+ EA
Sbjct: 240 SGDALAASQTITPDQLKSYYDSNIQRFHTDEQRRASHILIAAPKDGKEADRKAAKEKAEK 299
Query: 287 --FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
K F +A++ + LG + + + K G +
Sbjct: 300 LLEDLRKHPDTFADVAKKNSQDPGSAEKGGDLGFMGRGALVKP--FEDAMFALKDGQISD 357
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ +GY I ++ IKP+ T + V+ ++ +++ A++ E + +
Sbjct: 358 VVETDYGYHIIKLTGIKPAATEPLEAVRPELEIELKKQLAAKAYTEQADAFGNMVYEQSE 417
Query: 401 M-DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + K+ V V GK+ K V +
Sbjct: 418 SLKPAADKFKLTIQTADNVTRTPNPVLGKDNPLNNEKVLKALFSDDAIKNKRNTEAVQVG 477
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + +I + PA RK EEV V++ + + AE + K G
Sbjct: 478 PTTLVSARIVDYRPAAARKFEEVEALVRQAYVAQQAAELARKDGEARLDALKKSGS---- 533
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
G + + + + + + + Y ++++
Sbjct: 534 -ADGFG------SMVTVSRAKADGVSPKAVDSIMRADASKLPSLVGVDLGADGYAIYRIA 586
Query: 578 NSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P +++ L QM + L + LK+ V +
Sbjct: 587 KVGTPPQANANQREADAQQLGQMAGQTELAAFYDVLKAGAKVKI 630
>gi|294627916|ref|ZP_06706495.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292597830|gb|EFF41988.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 656
Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats.
Identities = 103/670 (15%), Positives = 228/670 (34%), Gaps = 61/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPTWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGEKFDPRTFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA P F D KFS D + + LA+ ++ +
Sbjct: 120 LGAEDAGIVIGDATVRDYIANIPAFQV-DGKFSPDQYRAALAQGTPPRTPAQFDALVSDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L A S+A + QW++
Sbjct: 179 LQQSVIPQAVAESGFATTSEFERLLKLMGETRDVELAMLPPPAADAAP-VSDAQIKQWYD 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + L+ YE K ++ PE R ++
Sbjct: 238 GHTQDFRQPETVTIEYVELNAATMPPATAADEATLRKRYEDEKARFVEPEQRLASHILIS 297
Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+ A A ++ + G F LA+ + LG K +
Sbjct: 298 AGPDAAAQKAAEAKAAKLAAEAKQTGTDFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K G+ I FGY + + +K SF++V+ +A + A +
Sbjct: 358 --FEDALFSMKAGEVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDQLAAEQLKADADKA 415
Query: 384 VKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L + A +
Sbjct: 416 FADVSGKLVDQVYKNPTALEPAAKQVGLPVQTLGPFSRSDASGVAANPAVL-----RAAF 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + + +++ + L++V V + + + ++
Sbjct: 471 SETLVQDGTVSDPITIAPNHSVVLRVTNHTAEQALPLDKVRDKVTAAIRADRAEKAAAAA 530
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A+ L+ K G+ + + + + + R +FS P
Sbjct: 531 ADALLARVQK-GETLQALADSEKLQVQPIPGLPRTAPIPT---PAANRAIFSAPRPTEGK 586
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ +G + VF ++ + G P +++ L+Q+ + + + ++ +
Sbjct: 587 PSVGKVELDGGRFAVFVISKATPGDLKQMPAEQQTMLREQLSQIDGNNAAQAYVKEMRKR 646
Query: 614 YSVTVHDNLI 623
Y + + + +
Sbjct: 647 YKIQIEEAQL 656
>gi|330878776|gb|EGH12925.1| periplasmic folding chaperone [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 627
Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 225/639 (35%), Gaps = 36/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEAMFTATSNKQNAAEVNGEDITQNELSQAV 60
Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++Q++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAGDARFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRMQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+D R ++ D+ L P+ ++ + ++++ + +PE + YI
Sbjct: 180 AQVDAFARLE--KQTRDFASLTQPADPSAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIE 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEADEAFQS 289
K+ + +++LQA Y+K + + + +E Q
Sbjct: 238 LKKSSFFDKVTVKDEDLQAAYQKEIANLSEQRRAAHILIEVNDKLNDEQAKAKVEEIQQR 297
Query: 290 LKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
L KG+ F LA+E + S G F+ + + D + +++++L K + + F
Sbjct: 298 LAKGESFAALAKEFSQDPGSSSKGGDLGFAGKGVYDPAFEEALYALNKDQ-VSQPVRTDF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ + + ++ +F +K+ ++N ++ +K E K+LE+ + + + ++
Sbjct: 357 GWHLIKLLGVEAPSVPTFASLKEKLSNDLKSQLVEQKFVEVTKQLEDSAFESSDLTQPAQ 416
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ G + A I + S +T+ L + + V
Sbjct: 417 DLGLKVQTTAPFGREGGEGLTANRAVI-----QAAFSPEVLEEGSNSNTLELDPETVVVV 471
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+ KE + + LE V + ++ +K L+ K G
Sbjct: 472 RSKEHLQPQQLPLESVASSIRAQLVKEHATAAAKTKGEALLAGLRDGKIPLA--AKQDGR 529
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK- 580
+ ++R + + +F P + K P S+V+ ++
Sbjct: 530 DWKSMEAVSRSQ---EGVDPQVLQALFRMPKPVAKDKPEFASITAADGSFVIVRLNGVNQ 586
Query: 581 --VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK ++ +L + + A L+S+ +
Sbjct: 587 AAAPTDAEKAQYRRFLASRAGQQDFAAYRAQLESKAKIE 625
>gi|309973498|gb|ADO96699.1| Putative peptidyl-prolyl cis-trans isomerase [Haemophilus
influenzae R2846]
Length = 622
Score = 219 bits (556), Expect = 1e-54, Method: Composition-based stats.
Identities = 107/641 (16%), Positives = 242/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + V+K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQFMTQH---LAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ + + LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLHTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + V+D+ I + + ++
Sbjct: 582 GMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQDDEAQQ 622
>gi|319897486|ref|YP_004135683.1| peptidyl-prolyl cis-trans isomerase d [Haemophilus influenzae
F3031]
gi|317432992|emb|CBY81363.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
F3031]
Length = 622
Score = 219 bits (556), Expect = 1e-54, Method: Composition-based stats.
Identities = 103/641 (16%), Positives = 242/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQF---MTQHLAHIQFANEQDAKVAYEELEKGANF 295
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ + + LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ K+ Q V + ++ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNEKSQQAVKKLNENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + ++D+ I + + ++
Sbjct: 582 AMQLLRSHQSELQVQLIQGLRERAKIEINDSFINQDDEAQQ 622
>gi|319775064|ref|YP_004137552.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
F3047]
gi|317449655|emb|CBY85861.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
F3047]
Length = 622
Score = 219 bits (556), Expect = 1e-54, Method: Composition-based stats.
Identities = 105/635 (16%), Positives = 239/635 (37%), Gaps = 29/635 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQF---MTQHLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ + + LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKFLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + ++ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENSLNEKAQQAVKKLNENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
L + +L +I L+ + + V+D+ I +
Sbjct: 582 GMQLLRSHQSELQLQLIQGLRERAKIEVNDSFINQ 616
>gi|68249587|ref|YP_248699.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
86-028NP]
gi|68057786|gb|AAX88039.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
86-028NP]
Length = 622
Score = 219 bits (556), Expect = 1e-54, Method: Composition-based stats.
Identities = 108/635 (17%), Positives = 239/635 (37%), Gaps = 29/635 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + V+K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKVSKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEVFFQKRLARLATLSLEDEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQF---MTQHLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ + + LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S E + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
L + +L +I L+ + + V+D+ I +
Sbjct: 582 GMQLLRSHQSELQFQLIQGLRERAKIEVNDSFINQ 616
>gi|307729660|ref|YP_003906884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1003]
gi|307584195|gb|ADN57593.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1003]
Length = 646
Score = 219 bits (556), Expect = 1e-54, Method: Composition-based stats.
Identities = 98/643 (15%), Positives = 223/643 (34%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + + ++V+ G+ S+ V SV K+ + N+
Sbjct: 1 MLDFFRNHKR-LMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRVEYDNAM 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L Q +G + + + ++LD L+ L + + L A V +
Sbjct: 60 RQQLDRARQMLGAQFDIKAFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + LA +G+ +Y + ++ ++ G S
Sbjct: 120 NDPVISSLKKPDGSIDVERYKQLLAMQGMTPDQYDERVRYSIATQELPASIQGSAFTSKT 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + R V I + R A P++A L +++ +++++ P I Y++
Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKIQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ S +L+ Y++N Y + ++ K+A A ++ K K
Sbjct: 240 SPATLAASVQPSEADLKKYYDENIAHYRTEGQVRASHILIAAPKDASAADKAKAKQKAEE 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + LG F + I D KK + +
Sbjct: 300 LLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFALKKDEVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ FGY I +++KP+ T F EVK+ IA ++ AS+ +D + +
Sbjct: 360 IVQTDFGYHIIKATDVKPAVTRPFDEVKEQIARDLKTQLASKAFSDDSEGFTSIVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + + + V + K + + + +
Sbjct: 420 SLQPAADKYKLQVQTATVTPQPDPKLPPDSPLNNAKFLAAVFANDSVNARNNTQAIDVGS 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + A L+ + V++ ++ E + E+ K
Sbjct: 480 NTLIAARVTDYKAAAVPALDAIKDAVREKVIAAQSNEAAHKDGIAKLAEFEKSKAT---- 535
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
+ +++R D + +S ++ + + + + Y +++V
Sbjct: 536 -----TGFSSPLKVSRND--AQGVPAAALSAIYKADAQKLPAYVGVDLGDAGYAIYRVNA 588
Query: 579 SKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G Q + Q+ ++ + I L+++ V +
Sbjct: 589 VVAGGPVDPQRLAAAQQQIAQVQSQSETQAYIDALRARSKVKL 631
>gi|307261487|ref|ZP_07543156.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306868770|gb|EFN00578.1| Peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 625
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 98/639 (15%), Positives = 229/639 (35%), Gaps = 32/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + ++ V KI ++ + F+I G+ L G + V V ++ +F +
Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGLV--GGDTAAVKVNGTEITQQAFNAAK 58
Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++
Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI S +F +D KFS+D++ L G++ Y + + + + +G
Sbjct: 117 KSEIVNSSVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNV 175
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + R V + S L ++++ +K PE + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYV 235
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ +++++++++ YEKNK Y + + N+ +A + +K G
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +LA+ + LG P ++ + + G + V++ Y I
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPKA--FEAAAASLQDGQVSAVVNVDGAYHII 353
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
V K + ++VK I +R + + + S++ +++ +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + R G++ P ++ ++ +
Sbjct: 414 KVQKSAQFTQQNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMFV--RVSD 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
R + LEE +V + K K + + +KA + V ++ K+ S
Sbjct: 472 YQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNEG--------KDEKVSFGN 523
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ E++ VFS P V ++ + G ++E
Sbjct: 524 AQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDGSLEEF 581
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
Q L + ++ L+++ S+ V+ + + +
Sbjct: 582 KPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620
>gi|145638176|ref|ZP_01793786.1| lipoprotein signal peptidase [Haemophilus influenzae PittII]
gi|145272505|gb|EDK12412.1| lipoprotein signal peptidase [Haemophilus influenzae PittII]
gi|309751332|gb|ADO81316.1| Putative peptidyl-prolyl cis-trans isomerase [Haemophilus
influenzae R2866]
Length = 622
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 106/641 (16%), Positives = 241/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQF---MTQRLAHIQFANEQDAKMAYEELQKGANF 295
Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ ++ + LG + +P + + G ++ I+ Y I
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + + + + + + + + D + V++ +
Sbjct: 409 VKVQESGYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLSENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + V+D+ I + + ++
Sbjct: 582 AMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQDDEAQQ 622
>gi|329908176|ref|ZP_08274836.1| Peptidyl-prolyl cis-trans isomerase ppiD [Oxalobacteraceae
bacterium IMCC9480]
gi|327546752|gb|EGF31691.1| Peptidyl-prolyl cis-trans isomerase ppiD [Oxalobacteraceae
bacterium IMCC9480]
Length = 642
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 94/641 (14%), Positives = 211/641 (32%), Gaps = 37/641 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E +R R + + L+++ F + GL + + VG Q + + +
Sbjct: 1 MFEFVRTHKR-LMQFLLLLIIVPSFALVGLGSYKSFGDAENVIAKVGGQPITQVEYDAAQ 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ Q G + + + + ILDNL++ L L + I
Sbjct: 60 REQMARFKQMFGAQFDPKMFDTPEARQGILDNLIAQRALSVEAARQHLSVADAALQQSIT 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
G D KF + + S LA +G+ Y + ++ + +
Sbjct: 120 GIAGLVGPDGKFDGERYRSLLAMQGMTPAMYEQRLRQDMAVQQLNSAIQSTAFAPKTVAT 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R+V ++ A + + +L +++K + PE I Y++
Sbjct: 180 RLSDINDQERTVQELLFKPADYAAKVNVTADMLKAYYDKNARQFEVPEQATIQYVVLSSD 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+I +++ E+ YE+NK+ + E R ++ +K A ++ K K LA
Sbjct: 240 ALASQIAVTDQEVADFYEQNKKSFGVDEQRRASHILINLKKGASATEKAAAKAKAEQVLA 299
Query: 301 E-----------------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+ +QG + L F K + + K + + ++
Sbjct: 300 QVRKAPGDFAKIAKASSEDQGSAPEGGDLDFFGKGAMTPP--FEEAVFKLKLNEISGLVE 357
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMD 402
FG+ I V+ IKP+ + +VK I ++ KA+++ E + S+
Sbjct: 358 SDFGFHIIEVTAIKPASFRTLDQVKPQIVADIKRQKAAKQYSEAAESFGNTVYEQADSLK 417
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
++ + K+ + + + K + + +
Sbjct: 418 PVADKLKLKIETVSGLTRTPNPLAAPTALFNNAKFLNAVFADDTLKNKHNTEAIEVAPST 477
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
M +I + P R EV V++ ++A + D
Sbjct: 478 LMAGRIVDYKPVGKRPFAEVEAVVREKVIAEESAVLAKKAGEAKLAALKTA-----DDAS 532
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSK 580
G ++R N+ G V + + + Y V++++
Sbjct: 533 GFGV----AKVVSRSKND--GMNGPGFDSVMKADISKLPAIAGADLSRQGYAVYRISKVA 586
Query: 581 VG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + + + + + + LK + V +
Sbjct: 587 QAEKIDAPRRLEEQQQIANALAQQEMIAYLNVLKEKAKVKI 627
>gi|226944452|ref|YP_002799525.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Azotobacter
vinelandii DJ]
gi|226719379|gb|ACO78550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Azotobacter
vinelandii DJ]
Length = 624
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 97/635 (15%), Positives = 219/635 (34%), Gaps = 31/635 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AKI + V+ V + G L S S S V K+ +
Sbjct: 1 MLQNIRDNSQGWIAKIIIGVIIVLLALTGFDAILTSTSNSQNAAEVNGAKIGLAELNREV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + Q++G ++ + L L L+ L Q E + I
Sbjct: 61 ETQRRQLLQQLGKDFDASQLNEGLLRNAALSGLIERKLLLQGAEAADFAFSQNALDQLIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++P F D +F + F +A+ G + ++ + + + G ++ +
Sbjct: 121 QTPEFQV-DGRFDANRFDQVIAQMGYSRPQFRQMLEQEMLIGQLRAGLAGSGFATDREIG 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++ D+ L PA + V+ ++E++ +Y E + YI
Sbjct: 180 DFVRLE--RQTRDFYTLTLSADPAQVTVGDEVVQAYYEEHASSYMTSEQLVVEYIELKRD 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN-------QKEADEAFQSLKKG 293
++EI +++LQA Y++ L + + + +E + KG
Sbjct: 238 AFFDQVEIRDEDLQALYQREIANLAEQRQAAHILLEVNDKLSEEQAKAKLEELKARIDKG 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
+ F LA+E + G PD + + K+G+ + + FG+ +
Sbjct: 298 EDFAALAKEFSQDPGSADKGGDLGYAGPDVYDPAFEKVLYSLKEGEVSSPVRSEFGWHLI 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ +++ SF +K+ + ++++ + + E + LE + + + ++ +
Sbjct: 358 KLLDVQAPEIPSFDTLKEKLVHELKAEQVEQAFVEASRDLENAAFEASDLAQPAQELGLQ 417
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
P G + + + + + + L + + +++KE
Sbjct: 418 IKVTPPFGREGGEGLTANRQVV-----QIAFSPEVLEQGNNSSAIELDPDTVVVLRVKEH 472
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
++V +++ AEEV + L+ E + + G ++
Sbjct: 473 KKPEQIPFDQVAGKIREQLLKKHAAEEVRVRGEALLGELRQGHTPIDQAQQGEGWHVVEA 532
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG-----LSYVVFKVTNSKVG---- 582
+ + + F P P G Y + ++T
Sbjct: 533 AA-----RDQEGVDPAILQSAFHMPKPAGTDKPSFAGVELPNGDYALIRLTGVSDPSDAL 587
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+EK + +L + + L+S +
Sbjct: 588 SEEEKGMYRRFLASRNGQQDFAAYRRQLQSVADIE 622
>gi|84622593|ref|YP_449965.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|84366533|dbj|BAE67691.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 656
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 103/670 (15%), Positives = 225/670 (33%), Gaps = 61/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG------------- 47
ML+ +R + W+A L +L +PFL + ++ G++ V V
Sbjct: 1 MLQKLRDKTSGWIATAILGLLMIPFLFV-IDNSYLGGIGANNVAKVQAPPNWWKSAPSWW 59
Query: 48 -------RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ F ++Q Q+ G + S ++LD LV +
Sbjct: 60 PVSLLWQHHEISTQDFRARFEQARMQERQRQGENFDPRTFESRENKLQVLDQLVDEQVVR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR--EGINEKEYIDHYTKM 158
ED G+ V IA F D KFS D + + LA+ ++
Sbjct: 120 LGAEDAGIVIGDASVRDYIANIQAFQV-DGKFSPDKYRAALAQGTPPRTPAQFDALVRDS 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ + + ++ + E R V+ +L A S+A + QW++
Sbjct: 179 LQQSVIPQAIADSGFATKSEFERLLKLMGETRDVELAMLPPPA-MDTAPVSDAQIKQWYD 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++R PE I Y+ + L+ YE+ K ++ P+ R ++
Sbjct: 238 GHTQDFRQPETVTIEYVELNAATMRPATAADEATLRKRYEEEKARFVEPDQRLASHILIS 297
Query: 279 NQKE-----------ADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDV 323
+ A A ++ G F LA+ + LG K +
Sbjct: 298 AGSDAAAQKAAEAKAAKLAAEAKAPGADFAALAKANSQDPGSKDAGGDLGWVEKGTMVKP 357
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K GD I FGY + + +K SF++V+ +A + A +
Sbjct: 358 --FEDALFSMKAGDVVGPIKSEFGYHVIQLREVKGGQGKSFEQVRDKLAAEQLKADADKA 415
Query: 384 VKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + T+++ +++ + L + A +
Sbjct: 416 FADVSGKLVDQLYKNPTALEPAAKQVGLPVQTLGPFSRSDASGVAANPAVL-----RAAF 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + + +++ + L++V V + AE+ ++
Sbjct: 471 SETLVQDGTVSDPINIAPNHSVVLRVTNHTAEQALLLDKVRDKVTAAIRAD-RAEKAAAA 529
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A +L + G+ + + + + + R +FS P
Sbjct: 530 AADALLARVQRGETLQALAASEKLQVQPIPGLPRTAPIPT---PAANRAIFSAPRPTEGK 586
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+G + VF ++ + G P +++ L+Q+ + + + ++ +
Sbjct: 587 PSFGKVELDGGRFAVFAISKATPGNLKQMPAEQQTMLREQLSQIDGNNAAQTYVKQMRKR 646
Query: 614 YSVTVHDNLI 623
Y + + + +
Sbjct: 647 YKIQIEEAQL 656
>gi|32033981|ref|ZP_00134237.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208477|ref|YP_001053702.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae L20]
gi|126097269|gb|ABN74097.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 625
Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats.
Identities = 98/639 (15%), Positives = 229/639 (35%), Gaps = 32/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + ++ V KI ++ + F+I G+ L G + V V ++ +F +
Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVITGIGTGLV--GGDTAAVKVNGTEITQQAFNAAK 58
Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++
Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI S +F +D KFS+D++ L G++ Y + + + + +G
Sbjct: 117 KSEIVNSSIFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNV 175
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + R V + S L ++++ +K PE + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYV 235
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ +++++++++ YEKNK Y + + N+ +A + +K G
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +LA+ + LG P ++ + + G + V++ Y I
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPKA--FEAAAASLQDGQVSAVVNVDGAYHII 353
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
V K + ++VK I +R + + + S++ +++ +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + R G++ P ++ ++ +
Sbjct: 414 KVQKSAQFTQQNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMFV--RVSD 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
R + LEE +V + K K + + +KA + V ++ K+ S
Sbjct: 472 YQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNEG--------KDEKVSFGN 523
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ E++ VFS P V ++ + G ++E
Sbjct: 524 AQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDGSLEEF 581
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
Q L + ++ L+++ S+ V+ + + +
Sbjct: 582 KPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620
>gi|49474119|ref|YP_032161.1| peptidyl-prolyl cis-trans isomerase protein [Bartonella quintana
str. Toulouse]
gi|49239623|emb|CAF25982.1| Peptidyl-prolyl cis-trans isomerase protein [Bartonella quintana
str. Toulouse]
Length = 629
Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats.
Identities = 143/628 (22%), Positives = 293/628 (46%), Gaps = 16/628 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML IIR A+ +WVA+IFLV L + F+ WG+ ++S G + + +
Sbjct: 1 MLNIIRNATNSWVARIFLVSLLLCFIFLWGIPQ--LHTKSERDLISSGESTITVDDYHLA 58
Query: 60 WKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ ++ +G + + + + L D+ + + +
Sbjct: 59 LADQSSRLALASHLGRMFTPNEMQQYQIPTFVFSQLQQDVLFDEETRQMKINLSKDAIAR 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ +F + F+ ++F + L + I+E ++D+YTK R ++ + GM+ +
Sbjct: 119 SLGADNMFQ-INGVFNQNLFRNYLQQLHISESNFLDYYTKKEKRKQLIAASLSGMKAPDF 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R DY+VL+ + I+DP L +WFE +K+ +R PEY+ +S +
Sbjct: 178 FYKALALYQGETRIADYLVLDLKEKKTISDPDQETLQKWFETHKNEFRVPEYRTVSLLSM 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + K +IS DE +A Y +N ++ +PE RT+E+L FP ++ AD A + + G F
Sbjct: 238 KLAKFIKPEDISEDEARAYYTQNTSRFIAPEKRTIEELRFPTREAADNAAKKIADGLSFD 297
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L + + K+L+DI G ++ +P+ ++ K+G + VI+ G VI V++I
Sbjct: 298 DLVKAEKKTLNDIKKGPLAESELPNRLASE--IFELKQGQVSAVINDLQGPVIIRVTSIV 355
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
PS + F+ V+++I + +A++ ++ +Y +E G S+ E++ + K+ +
Sbjct: 356 PSSPIPFENVEENIRQMLAKNRAADDMRNNYTAIENARFEGASLKELADQYKLPLRTI-T 414
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+D GK +G + +P K+ LL ++ ++ D ++L G Y+W ++ IPARD+
Sbjct: 415 IDKTGKTSEGTILIDLPEKDILLNSIYQSNEGADLD-PLSLQGGGYLWYKVDTIIPARDK 473
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
EE + WK+ + + KA + + G++ + LG + TT + R
Sbjct: 474 TFEEAKQNAIVQWKSEEIQRLLDEKAKDALKQL-TAGQSLVSLAHILGVTKQTTQPLRRQ 532
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK----FISY 593
D+ ++ FG +GI +FS + +++++ + +
Sbjct: 533 DS-SEIFGLEGIKALFSDSKGHYGIVKGPVATNRILYQIKEVTMPKDFTAQTLSPDIRTN 591
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ +M+ +DL ++ ++ + ++
Sbjct: 592 IDRMIREDLKLEMLQVANKKHPLKINSA 619
>gi|255262468|ref|ZP_05341810.1| peptidyl-prolyl cis-trans isomerse D, putative [Thalassiobium sp.
R2A62]
gi|255104803|gb|EET47477.1| peptidyl-prolyl cis-trans isomerse D, putative [Thalassiobium sp.
R2A62]
Length = 622
Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats.
Identities = 114/629 (18%), Positives = 253/629 (40%), Gaps = 31/629 (4%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
R + + I + +LFV + +G + ++ SVG +++ ++ N QE+
Sbjct: 3 RSKTSNFFVWIVIGLLFVGLIGFGATGL---SGNIRSIGSVGDKELDLQTYANQLNQEIR 59
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ G V+ A+++GLD+ +L ++ LD +GL RV +I P F
Sbjct: 60 AFEAQTGSSVSFPEAQTIGLDRAVLARVIGVRALDNEAAQVGLSVGDARVRAQILEIPSF 119
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
G +F D + L G+ E + + ++RT + G + G+ S+ + +
Sbjct: 120 RGPSGEFDRDAYRFSLGNNGLTEATFETQLREEMARTVLQGAVLTGVEASDTYAETLSGY 179
Query: 186 YFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
E+R ++ L+ + ++ L +++ ++ P KR++Y+
Sbjct: 180 IGESRDFTWVRLSQADLETELTAATDEQLLDYYQANPIDFTEPAKKRLTYVSLTPEMIVD 239
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303
+EI LQ Y + + PE R VE+LVF +Q++AD A L +G+ F L EE+
Sbjct: 240 TVEIDETALQDLYNTRLDTFVQPERRLVERLVFSSQEDADAAAARLTEGEITFDALVEER 299
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
G +LSDI LG ++ + D A+ GD + G + ++ + + +
Sbjct: 300 GLALSDIDLGDLAQPELGDAG---DAVFAAQTGDVVGPLPTDLGPALFRMNAVLSAQETT 356
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
+++ ++ ++ +A + + + +++ L G +++E++ ++V + + +
Sbjct: 357 YEQALPELREELATERARRIIDDASREIDDLLVGGATLEEVAAETEMVLGQIDWFAGSEE 416
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
+ G DG +++ E+I A LE++
Sbjct: 417 IIAGY---------DNFRAAANAVTSNDFPDIERFEDGGLFALRLDETIDAELVPLEDIR 467
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
V W+T +T+ ++ +A L+ + EG+ + G + R D
Sbjct: 468 GKVVAGWETQETSRLLNEQAQGLI-DQVNEGRTLVSL----GVEANVETGMTRTDFIAGA 522
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK------FISYLTQM 597
+ VF+ V + + + ++ + ++ Q
Sbjct: 523 -PGQMLPSVFALDVGGSEILEAF--GAVYLVRLDVIGAADTEGEEATARLDLLSQQAEQG 579
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ +DLLD+ ++++ + ++ +
Sbjct: 580 IAQDLLDAYSRAVQAKAGIELNQAALNAV 608
>gi|145632388|ref|ZP_01788123.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 3655]
gi|144987295|gb|EDJ93825.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae 3655]
Length = 622
Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats.
Identities = 107/635 (16%), Positives = 235/635 (37%), Gaps = 29/635 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + S + AK L ++ + FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLSNSKAAKFILGLITLSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEARAQREGEAFMAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K +++++ E+ Y+ NK ++ + + + F N+++A ++ L+KG F
Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQF---MTQRLAHIQFANEQDAKVVYEELQKGANF 295
Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ ++ + LG + +P + + G ++ I+ Y I
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK I + +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIVDLVRKSLIESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DSTNIGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSENPES-----KIDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S E + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
L + +L +I L+ + + V+D+ I +
Sbjct: 582 GMQLLRSHQSELQLQLIQGLRERAKIEVNDSFINQ 616
>gi|145634178|ref|ZP_01789889.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
PittAA]
gi|145268622|gb|EDK08615.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
PittAA]
Length = 622
Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats.
Identities = 107/635 (16%), Positives = 239/635 (37%), Gaps = 29/635 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQF---MTQRLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ ++ + LG + +P + + G ++ I+ Y I
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + ++ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENALNEKAQQAVKKLNENPES-----KVDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S E + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
L + +L +I L+ + + V+D+ I +
Sbjct: 582 GMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616
>gi|145630100|ref|ZP_01785882.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021]
gi|144984381|gb|EDJ91804.1| peptidyl-prolyl cis-trans isomerase [Haemophilus influenzae R3021]
Length = 622
Score = 218 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 106/641 (16%), Positives = 241/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNSVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K +++++ E+ Y+ NK ++ + + + F N+++A ++ L+KG F
Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQF---MTQRLAHIQFANEQDAKVVYEELQKGANF 295
Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ ++ + LG + +P + + G ++ I+ Y I
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSETPES-----KIDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S + + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + V+D+ I + + ++
Sbjct: 582 AMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQDDEAQQ 622
>gi|251791833|ref|YP_003006553.1| peptidyl-prolyl cis-trans isomerase D [Aggregatibacter aphrophilus
NJ8700]
gi|247533220|gb|ACS96466.1| peptidyl-prolyl cis-trans isomerase D (PPIase D)(Rotamase D)
[Aggregatibacter aphrophilus NJ8700]
Length = 615
Score = 218 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 106/630 (16%), Positives = 234/630 (37%), Gaps = 25/630 (3%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E + AS W +K + V F+I ++ L++ ++ V +++ +F N +
Sbjct: 3 MEKLNGASNNWASKFLFGFISVTFVISSMAGYLYTR-TDNSAAKVNGEEISQHAFQNQYN 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+S + A+ L ++IL +L+ L Q+ ++ L R+ EI
Sbjct: 62 IASRNLSPQE----ADSPAQVANLKRQILSSLIDQELLRQYTNELKLGVSDERIKQEIVT 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
SP F + KF + ++ L GI+ + Y + + L + G D
Sbjct: 118 SPNFQN-NGKFDNALYQQVLQTNGISAETYASYVREALRLEQLQGGLAITAFSVPAQRDA 176
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ +F+ R++ L+ A ++A + +++ +K ++ PE ++ Y+
Sbjct: 177 LAKLFFQRRNIRLANLSLADEIAKQTVTDAEIQAYYDAHKADFTIPESVKVQYLDLSGAN 236
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
EK I I++ E+ Y+ NK ++ + + + + +++A + + L+ G F LA+
Sbjct: 237 MEKNINITDVEIAQYYQDNKAQFTTQGQQRLAHIQVKTEQQAQDLYNQLQNGAAFADLAK 296
Query: 302 EQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L S P V + + G ++ + Y I V K
Sbjct: 297 NHSIDPTSAEKGGDLSWVSAGEFPKVFEDAA--NALAVGQYSQPVKLDNNYHIILVKERK 354
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ + + VK IA Q+R + + KR+ E S + + E + +
Sbjct: 355 DAGVLPLENVKAQIAAQIRQNLINNQFFSVEKRVAEKAFEDPSSLKAAADE--AGVKVQE 412
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ ++ + + S +++ + + V++ E +
Sbjct: 413 TGYFSRNNIPAALNYPNVASAIFDSEIS--QGGSNSEPMSVGEQHSLVVRVLEHKAQSTK 470
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
LEE ++ K K V ++A++ V E + GK G
Sbjct: 471 SLEEAKAEIIATLKQQKAETVVLAQADKFVQELA-SGKTVD------GVKFGAEQTWVFA 523
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYLT 595
+N+N S + + V+ + G +E+ +F +
Sbjct: 524 ENKNPALNNQVFSMAKPTEGKTTYKAAKDTKGDVVIIALDKVTDGKLSEEEQKQFAVQIE 583
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
Q L +++ L+++ + ++D+ I +
Sbjct: 584 QATQVGLQSNLLNALRAKAKIEINDSFINQ 613
>gi|237748739|ref|ZP_04579219.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13]
gi|229380101|gb|EEO30192.1| peptidyl-prolyl cis-trans isomerase [Oxalobacter formigenes OXCC13]
Length = 647
Score = 218 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 111/644 (17%), Positives = 232/644 (36%), Gaps = 41/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR R I LV + F+ G+ V V + + + N+
Sbjct: 1 MLEFIRNHKR-LTQIILLVFIIPSFIFVGVEG-FKRFGDGDAVAKVAGKSITQQEWDNAQ 58
Query: 61 KQELGMISQK---IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+++ + Q+ G +++ S +L NL+ L + + L V
Sbjct: 59 REQAERLRQRAAASGQPFDNKWIESSEFKWNVLQNLIVKRVLLETVNKENLSVPEQIVLQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P G D K + LA +G+N + + ++ +
Sbjct: 119 RIREIPGLIGPDGKLDEARYKEALAAQGLNPDMHFAMVRQDMAIQQLAAPIEYSAIEPTA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + R V ++ NN + ++ L +++ ++ + PE+ + I+
Sbjct: 179 VTQRVFNLFEQEREVQHLFFNNAAYRSKVSVTDEELNAFYKAHEAQFTIPEHADVEVIVL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ K I+IS+ +LQ+ Y +NK+++ PE R + ++ K A EA +S K K
Sbjct: 239 DMPSVAKNIKISDADLQSYYSQNKDRFSIPEERRAQHILIAVNKNATEAEKSEAKKKAEG 298
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + + LG F++ + + KKGD +
Sbjct: 299 ILAELKANPARFAELAKANSQDPGSAQNGGDLGFFTRGKMVKP--FNDAVFGMKKGDISD 356
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGT 399
++ FGY I VS+IKP+ +V+ + ++ +A+ K E +
Sbjct: 357 LVQTDFGYHIITVSDIKPAVAKPLAQVRDRVLQELTREQANRKFAEMSETFSNMVYEKPD 416
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ ++ K+ P + + K +
Sbjct: 417 SLKPVADALKLTIHSFPNLARDPAIAAKQNQLLANPKILQAIFTDDVVKGKHNTEAIEAA 476
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ +I + PA ++V + + K + + + + KEG N
Sbjct: 477 PQVLVAARIAKHYPATLTPFDKVKQVITAEVINEKAQKLAKAAGEAELAKL-KEGSNANG 535
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
++ S NR + ++ V V + + + G+ YV++++T
Sbjct: 536 FSSSIMVSRHKIAMANRAE----------LAPVMKADVSKLPAYVGADVPGMGYVIYRIT 585
Query: 578 NSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+K + + + ++ L++ + YLK + V +
Sbjct: 586 KVVTPSNPDKNLREAMSKQMANVASQQDLNAYLNYLKKEAKVEI 629
>gi|309781952|ref|ZP_07676683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia sp.
5_7_47FAA]
gi|308919296|gb|EFP64962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia sp.
5_7_47FAA]
Length = 635
Score = 218 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 84/640 (13%), Positives = 221/640 (34%), Gaps = 43/640 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ + L+++F F+ +G+ + S V + + + +++ + Q +G
Sbjct: 1 MFLVLLILVFPSFVFFGVQSYSSFMDSSHDAAKVDGKVISTNEVDARVREQTERLRQMLG 60
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP---LFHGKD 129
+ + + + +LD ++ L + L + ++ I + P D
Sbjct: 61 AQYDPRQFEGPQMRRDVLDGIIQQRVLANEVTRANLTISNEKIRDTILQIPAVAALRKPD 120
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
F + +V L+ + + ++ + LS+ + V L+D+ + +
Sbjct: 121 GSFDQEAYVRLLSAQNMTPEQLEGNLRFELSQQQIPQSIVSSAFVPKSLVDRLIQVRDQQ 180
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
R V ++ A + + + +++ ++ + PE + Y++F E K+I ++
Sbjct: 181 REVQALLFKPADYAAKVNADDKAIQAYYDAHQQEFSVPEQVKAEYVVFSGEEMMKQIPVT 240
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------------FQSLKKGKKF 296
++L+ Y++N ++ + E R ++ A A + K F
Sbjct: 241 PEQLKEYYDQNAARFKTQEERRAAHILIKLPDNAKPADKEAAKKKAEEVLAEVRKNPASF 300
Query: 297 IQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
LA++ LG K +++F+L + GD + V+ FG+ I
Sbjct: 301 ADLAKKYSGDPGSAAQGGELGFLGKGATV-PPFENALFALKQPGDISDVVQSDFGFHIIK 359
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIV 411
+ +K + VK ++ ++R A++K E + S+ ++ + K+
Sbjct: 360 LEEVKGGGVQPLEAVKPELERELRTQLANKKYSELADAFSNTVEDQSDSLKPVADKLKLQ 419
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIK 469
V + + +++L +F D + + + + + +
Sbjct: 420 IQTADNVTRT---PSPAQSGSPIGNDKVLKALFADDVIKNHRNTAAIQVGPTTLVAARAA 476
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
E PA +KL +V VK + A + + +
Sbjct: 477 EYRPATVKKLADVREQVKAKVIAEQAAALAKKAGEEKLAAVKQSNSADG---------FG 527
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVG---PV 584
++R + + ++ + + + Y ++++
Sbjct: 528 AVQTVSRQ--QAQGTPPAALTAILRADATKLPTTIGVDLGAQGYALYRINKVLPPANVDE 585
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ L Q + ++ LK++ V ++ + +
Sbjct: 586 TRRAADAQQLAQAAGQTEFNAYYEALKARSKVKINSSAVD 625
>gi|148828172|ref|YP_001292925.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
PittGG]
gi|148719414|gb|ABR00542.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
PittGG]
Length = 622
Score = 218 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 106/635 (16%), Positives = 238/635 (37%), Gaps = 29/635 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISRNLQVTDVEIAQYYQDNKAQF---MTQHLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ + + LG ++ +P + + G ++ I+ Y I
Sbjct: 296 ADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D+ + + + + + + D + V++ +
Sbjct: 409 VKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSENPES-----KIDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S E + + VV + + + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQSSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
L + +L +I L+ + + V+D+ I +
Sbjct: 582 GMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQ 616
>gi|269468957|gb|EEZ80538.1| Parvulin-like peptidyl-prolyl isomerase [uncultured SUP05 cluster
bacterium]
Length = 613
Score = 218 bits (553), Expect = 3e-54, Method: Composition-based stats.
Identities = 105/626 (16%), Positives = 243/626 (38%), Gaps = 26/626 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML IR ++ W+A + + ++ VPF ++G+++ F+ + + V S+ ++ F+N +
Sbjct: 1 MLSSIRNKTKGWLAYLIVGLITVPFALFGINEY-FTGTSNIIVASIDGDEISKEDFLNEF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++ ++E L + ++ ++V+ L QF + + + I
Sbjct: 60 NPQKRRLQQRLSERYDTE--FDAVLKQSVMRDMVNRRLLSQFSDGLDYATTSVELQAMIQ 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ LF D KFS D + L G + EY K L+++ + F+ + L
Sbjct: 118 SNDLFQV-DGKFSIDTYQKLLRLNGYSTAEYESIKLKELTQSQIKYNFLDSAFITPSALK 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R YI ++ + + + ++ K ++ P+ +I ++ +
Sbjct: 177 NLQALNDQQRKFSYIQIDADNYLDKVKVNVKSVKDFYNNQKASFFDPQKVKIDFVELSLE 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ K I+I++DEL YE K+++ + R + ++ Q+ A + + G F +LA
Sbjct: 237 KIAKNIKINDDELFNFYEDEKDRFTTEGERKAQHILVQTQETAKKVVGLINAGGDFAKLA 296
Query: 301 EEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+E + LG F+K + ++ ++G+ + + FGY I ++ I
Sbjct: 297 KEYSEDTGSKDDAGDLGFFTKGVMVPE--FETKVFGMQEGEVSGAVKSEFGYHIIKLNKI 354
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP SF+ + ++ + + + + +L + ++E+S + +V
Sbjct: 355 KPGSVKSFESARSELTKLYTQNQVQKSLYDLTDQLANLAYEVS-LEEVSDQMNLVVNTTQ 413
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D + K V A + + L ++ V++KE R
Sbjct: 414 FFAKNTNDYEKKFVDAAFSD--------VVLNKGENSEIIELSKDKFIVVRLKEKTVKRQ 465
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ +EV ++ K + V + A +V + + + + R
Sbjct: 466 KTFDEVKDEINKHLTVLLAKTFVDNIAKDIVASLNNNDDSVNKLMDKNQLKWNDVGWVER 525
Query: 537 MDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
+ +++VF+ V S VV ++ K +
Sbjct: 526 DSKKTDV---TVVNKVFALSKPNNGDTVYSAQSLGRSSAVVISLSAVKTSDSKPSKGLER 582
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTV 618
L + ++ +++ L++ + V
Sbjct: 583 SLLSFESNEMFAAILKTLRANAEIKV 608
>gi|83718610|ref|YP_442650.1| peptidyl-prolyl cis-trans isomerse D [Burkholderia thailandensis
E264]
gi|83652435|gb|ABC36498.1| peptidyl-prolyl cis-trans isomerse D, putative [Burkholderia
thailandensis E264]
Length = 632
Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats.
Identities = 87/630 (13%), Positives = 215/630 (34%), Gaps = 36/630 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
L+++ I G+ S+ V +V K+ + F +Q++ Q +G
Sbjct: 1 MFFLLLIVLPGLGIVGIQGFRGFFDESANVAAVNGHKITRAEFDGMLRQQVDQARQMLGA 60
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP---LFHGKDN 130
+++ + +++LD L+ L + + L A G V + P D
Sbjct: 61 QFDAKAFDTPERRQQLLDGLIQQRALADETQRLHLTASDGAVRQTLLSDPVVASLKKADG 120
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
F + + LA +G+ +Y + L+ + V + + + R
Sbjct: 121 SFDAERYTQMLAMQGMTPDQYQERVRYNLALQQIPASIVSSAFTPKSVARRLTELAEQQR 180
Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
V ++L + P++A ++ +++ +K + E I Y+++ + S+
Sbjct: 181 EVQQMMLKSADYATKVQPTDAQISAYYDAHKQAFATREAATIQYLVYSQAAAAAAAQPSD 240
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA---------- 300
+++ Y+ N +Y + V + K+A A ++ K K LA
Sbjct: 241 IDVKKYYDGNIARYRTDAQVRVSHIFIAAAKDASAADKAAAKAKAEQLLAEVKAHPDQFA 300
Query: 301 -------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
++ + LG ++ + D KKG+ + V+ G FG+ I
Sbjct: 301 QIAEKNSQDAPSAAKGGDLGFITRGSTAGGAAFDDAAFALKKGEISGVVQGDFGFHILKA 360
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+++KP+ EVK I ++ A++ ++ + + + + + ++I
Sbjct: 361 TDLKPAVVKPLAEVKDSIVADLKQQFAAKAFADNAEGFTSTVYEKAKSLQPAADKYTLTI 420
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
V + K + + + + + + ++ P
Sbjct: 421 QTATVSPQPNPALPPDSPLNNAKFLAAVFAADAVKNGNNTQAIDVGNNTLIAARVTSYQP 480
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+ L+ + V+ + A + E K ++
Sbjct: 481 STVPALDAIKDQVRAKVVADEAARLAKQDGEAKLAELRKSKSTAGFAA---------ADK 531
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQEKDKF- 590
I+R + +S ++ + + + + Y +F+V + + +
Sbjct: 532 ISRT--QAHGLPPAAVSAIYKVDPKTLPAYVGVDLGNDGYAIFRVNSVVAAAPADDQRLA 589
Query: 591 --ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
L Q+ + ++ +A L+++ V +
Sbjct: 590 AAQQQLAQVYAQSETEAYLASLRARSKVKL 619
>gi|126726381|ref|ZP_01742222.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales
bacterium HTCC2150]
gi|126704244|gb|EBA03336.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacterales
bacterium HTCC2150]
Length = 653
Score = 217 bits (552), Expect = 4e-54, Method: Composition-based stats.
Identities = 101/597 (16%), Positives = 244/597 (40%), Gaps = 25/597 (4%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
+ +V SVG ++V + + + EL +SQ+ G + E+AR+ G+ +L L+S
Sbjct: 67 GGSTQSVASVGDREVGVNEYARAVNNELSRLSQQFGQQITLEQARAFGVVDNVLQQLLSQ 126
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
A +D + +G V +I P F +F + RL G++ KE+ ++
Sbjct: 127 AAVDNEVVRLGFSIGDEEVRKQILEIPAFQSLGGQFDKVNYEERLRSSGLSTKEFENNLR 186
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
+RT + G GG+ ++ D F + R+ ++ +L+ + ++A L +
Sbjct: 187 IQTARTFLQGAVGGGVIGNSAYGDAVIDFLTQERNFEWALLDASALSEEVTATDADLQAY 246
Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
+++ + PE ++I+Y + IE+ E+QA Y++ ++ PE R E+L
Sbjct: 247 YDENPATFTLPESRQITYAVLLPETVAATIEVPASEIQAVYDERAAEFQKPERRLTERLA 306
Query: 277 FPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
F ++ A+ A L G+ +F L E+ +L D+ +G +++ + + A+++F+
Sbjct: 307 FADEAAANAAKARLDSGEVRFADLLAERDLTLEDVDMGEVTRDDLYE-ETANALFADGFL 365
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
G + S G I V+ + ++V++DI +++ ++A ++ + +++ L
Sbjct: 366 G-IAGPLPSSVGPAIFRVNGALAAIDTPLEDVQEDIRSELAQSRARREILDYITEVDDLL 424
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
A G +++E++ ++ + + +D+
Sbjct: 425 AGGATLEEVAAETQMTLETTDITTESAEDMAAYN---------EFRAAALSAQDGDFPEI 475
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
L DG +++ P + +E V + + W +T +++ A++
Sbjct: 476 TELSDGGIFALRLDGITPPTLQDIEAVTDQLNEAWTYAETQIRLNTLADEKAASLEG--- 532
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
+ + G + + R + + F+ + + N + +
Sbjct: 533 --DVLFADQGLRSIAEVNLRRDGTVAGT-PPTTVFEAFNLELGQLTTIDGVNE--VYIVR 587
Query: 576 VTNSKVGPVQEKDK-----FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ E+D+ + + ++ D+ + +++ V+++ + L
Sbjct: 588 LNAINTDTQTEEDEGLSAIVANEVNGSLSNDIYAAFTNAVRADAGVSINTTAVNAVL 644
>gi|304311294|ref|YP_003810892.1| Peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium HdN1]
gi|301797027|emb|CBL45240.1| Peptidyl-prolyl cis-trans isomerase D [gamma proteobacterium HdN1]
Length = 641
Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats.
Identities = 110/648 (16%), Positives = 238/648 (36%), Gaps = 38/648 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++ R WV K LV++ VPF+I G+ +F+ + V ++ + + +
Sbjct: 1 MDAFRSMLTGWVGKSLLVLISVPFVIVGIEG-IFTSGRDRAALVVDDHEISNAEIQQAVE 59
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
I +++G V+ + + + L+ L F + G +
Sbjct: 60 NRRTQILEQLGKGVDPSFITAEMVRPAVEQELIKRQLLIGFADKDGFSVPEEAAKSYVRA 119
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F +FS + S L+R GI K +++ + L + G G + +++
Sbjct: 120 VPQFQTPAGEFSQPLLNSYLSRAGITAKGLLNNVSTSLLTEQIQGGLGGSAFATPADVER 179
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL-FDVH 240
+ R + + A +PS+ LT+++E ++D+Y++ E ++SY+
Sbjct: 180 ILSLDKQVRDIGVAYIKPEEFRAGINPSDFDLTEYYEAHQDDYQSEERVKVSYVHLSQEQ 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE---------ADEAFQSLK 291
IS+ E+Q + ++ + E R E ++F + A++A LK
Sbjct: 240 FAANDEPISDAEIQDKLDEMIKDAEGNERRHAEHILFETGSKHSDAEARSLAEKALAELK 299
Query: 292 KGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
GK F +LA E+ + + LG + + D++F+L D + V+ FG
Sbjct: 300 AGKNFEELAKAQSEDFESAKNGGDLGYAGRG-VYAPEFEDALFALQAPNDISGVVKTEFG 358
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y I + + Q+ + I ++R + + + ++ + EIS +
Sbjct: 359 YHIIKLIGVDEPPLPDMQKSRDHIIAEIRKERIASNIGTIIDDIDRMAFESNDLSEISAQ 418
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMW 465
+ G I +++ F + + L DGS +
Sbjct: 419 YDQKPEVSDWLTRKGGTG-------IFADPKVVEAAFSSEILQEQRNSDVIELEDGSLVV 471
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++ + P R+ L+EV V++ K E + +A +L+ G++ + +
Sbjct: 472 LRMDQHEPVRELSLDEVKDKVREQVIASKAQELATEQAKELLGRL-NAGEDRVAVLASAK 530
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNS-- 579
+ + R + + F P + + V+N
Sbjct: 531 LFWQDSPALARNATMP---PQAVVQKAFELPKPAAGKYSNTTLPLASGEIALISVSNVVS 587
Query: 580 ---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
K E+ F + L ++ ++ L+S+ + + N +
Sbjct: 588 GDGKAKSEAEQRAFQNGLAMRYGSMDMEGFLSTLESKAVIKRNQNEAE 635
>gi|84500963|ref|ZP_00999198.1| hypothetical protein OB2597_02472 [Oceanicola batsensis HTCC2597]
gi|84391030|gb|EAQ03448.1| hypothetical protein OB2597_02472 [Oceanicola batsensis HTCC2597]
Length = 612
Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats.
Identities = 122/598 (20%), Positives = 247/598 (41%), Gaps = 28/598 (4%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
V SVG Q++ + + + EL + + G ++ E+A+++G+D+++L L++
Sbjct: 30 TGTVRNVGSVGDQEITVQEYGRTLQSELRAMEAQTGEAISLEQAQAMGIDRRVLSRLLTN 89
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
A D + +GL + + P F G D +FS D + + R G+ E+ D
Sbjct: 90 AAFDLEADRVGLSIGDETLVRLVRDIPAFRGVDGQFSRDGYEFAIERSGLTVGEFEDGIR 149
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQ 215
K +R + G G + LD ++ E R V + + + +PS L
Sbjct: 150 KETARALLQGAVFSGRALPDAYLDTVLNYFAERRRVTWARVESSQLDGESFEPSEEDLRA 209
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
+++ +++ PE KRI+Y ++EI D L+ EYE ++Y PE R VE+L
Sbjct: 210 LYDELIEDFTLPERKRITYAWLTPEMILDQVEIDEDLLRQEYEARSDQYNRPERRLVERL 269
Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
++ +Q A EA L+ G+ F L EE+G +LSDI +G S+ + A+
Sbjct: 270 IYADQGRAAEAADRLENGEADFETLVEERGLTLSDIDMGDVSRADLGAAG---DPVFAAE 326
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
G+ + G V+ I + +F+E D+ ++ +A +V + + E+
Sbjct: 327 SGEIVGPVETDLGPAFFRVNGILSAEETTFEEALPDLRQELAFDRARRRVANEAEPAEDM 386
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
LA G +++E++ + L VD+A +G + + D +
Sbjct: 387 LAGGATLEELAAETDMR---LGSVDWAEGQSEGI------AAYEGFDAAAARLDETAYPE 437
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
+ L DG +++ E +P E V V+ W+T +T + + ++A + + +
Sbjct: 438 VMRLTDGGIFAMRLDEVLPPEPAPFENVRERVRNIWETRQTMQRLRTQAGEHIDRLRES- 496
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+LG + T + R + + VF + ++ + ++
Sbjct: 497 ----ADFDSLGLEVQTEEALTRQGSVMGA-PEAFVETVFQMEEGQI--AMVDGFGAVLIV 549
Query: 575 KVTNSKVGPVQE------KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ ++ ++ L + +D+ ++S+ V + I
Sbjct: 550 RLDEVLPPNPEDPDTAAMRNNLSQQLHSSVTQDVNRLFTQDIRSRAGVELDQEAINAV 607
>gi|260581919|ref|ZP_05849715.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
NT127]
gi|260095112|gb|EEW79004.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus influenzae
NT127]
Length = 622
Score = 216 bits (549), Expect = 8e-54, Method: Composition-based stats.
Identities = 107/635 (16%), Positives = 238/635 (37%), Gaps = 29/635 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISKNLQVTDIEIAQYYQDNKAQF---MTQRLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ ++ + LG + +P + + G ++ I+ Y I
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAG 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + + + + + + + + D + V++ +
Sbjct: 409 VKVQESGYFSRQNVPAGLNFPNVIYTIFES--DSTNIGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ D G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSETPESTVD-----GINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S E + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
L + +L +I L+ + + V+D+ I +
Sbjct: 582 GMQLLRSHQSELQLQLIQELRERAKIEVNDSFINQ 616
>gi|84686955|ref|ZP_01014838.1| hypothetical protein 1099457000244_RB2654_01575 [Maritimibacter
alkaliphilus HTCC2654]
gi|84664929|gb|EAQ11410.1| hypothetical protein RB2654_01575 [Rhodobacterales bacterium
HTCC2654]
Length = 613
Score = 216 bits (548), Expect = 9e-54, Method: Composition-based stats.
Identities = 112/634 (17%), Positives = 245/634 (38%), Gaps = 34/634 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I + I + ++ V + +G ++ ++ VG ++ S++
Sbjct: 1 MFSNI----SRFFVWIIMALVMVGLIGFG---SVNFGGSGQSIGKVGDTEIDASAYFREL 53
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E Q+ G + A+ +GLD+++L +V+ ++ + +GL + +
Sbjct: 54 NAEFQGWQQQTGQNLTMAEAQEIGLDQRVLSRVVAITAVENETDRLGLSVGDQNLASRVT 113
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F G + +F D + L + G+ +E+ + ++RT + G + ++ D
Sbjct: 114 EIPAFQGPNGQFDRDTYDFVLEQSGLTAREFEETLRLEVARTILAGAVTSDLEMPDVYTD 173
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ E R + + + +P+ A L ++E D++ PE ++I+Y
Sbjct: 174 TLFGWARETRDFTWAPVTRSALEEPLPEPTEADLEAYYEANPDDFTTPETRQITYGWLKP 233
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQ 298
+ +I + + +LQA Y++ +++ PE R VE+LVF + EA A ++ G+ F Q
Sbjct: 234 EDVLDEIPMDDTQLQALYDQRIDEFQVPERRLVERLVFGSADEAQAAADRIEAGETTFDQ 293
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+ +G SLSD+ +G ++ + I G + ++ I
Sbjct: 294 EVQARGLSLSDVDMGDVTRRALGQAG---EPIFALDAPGVVGPIETDLGPALFRMNAILS 350
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ SF+EV+ + + A V+ ++E +A G +++E++ I + +
Sbjct: 351 AQETSFEEVRDQLFEEYAADAARRLVRTRATEIDEMMAGGATLEELAAE---GLITVDTI 407
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
+ + G + L DGS +++ E P +
Sbjct: 408 GYFDGNQDGI------AAYAPFREAASEASESDFPEVTELEDGSVFALRLDEITPPALQP 461
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
L+EV V W+ E + ++A L+ ++ ++ + +G + + I R
Sbjct: 462 LDEVRDAVVAGWEAQTLTEALVARAEALIPQF----ESGAEAPSTVGLTEVLEEDIARTS 517
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI------S 592
I F + + VV +T+ + +
Sbjct: 518 FIQGT-PSTMIETAFEMEEGTWQ--VVSGDGQVVVLGLTDVNAPDQDSAEAQEIKTTFGA 574
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++Q + D+ D+ A L++ VT+ +I
Sbjct: 575 RVSQQIAADVQDAFAAALEADAGVTLDQAMINAV 608
>gi|241763692|ref|ZP_04761741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
delafieldii 2AN]
gi|241367081|gb|EER61455.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
delafieldii 2AN]
Length = 641
Score = 216 bits (548), Expect = 1e-53, Method: Composition-based stats.
Identities = 104/644 (16%), Positives = 222/644 (34%), Gaps = 43/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IRK S+ V + +++ F++ G+ + FS S V V + + + N+
Sbjct: 1 MFESIRKHSK-VVMLLLFLLIIPSFVLVGIDRSYFSQKSS-VVARVDGHDISQTDWDNAH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
K E I + V+++ S L+ LV + + L R+ +
Sbjct: 59 KVETDRIRAQS-PTVDAKLLDSPQARYATLERLVRDRVFQAASQKMHLVTSDSRLARSLQ 117
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + + + +G++ + + + + +S V+G +G ++
Sbjct: 118 EIPAIAALKRPDGSLDAEAYRALVGAQGMSPEGFEANVRRDISVNQVLGGVMGTAFGTDA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ A ++ R V N PS+A L +++ + +++ E + Y++
Sbjct: 178 QVKLALDALYQRREVQVARFNPADFAGKVTPSDADLEAYYKAHTADFQQAEQATVEYVVL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
D+ I ++ D+L+ Y++N + E R ++ K+A A
Sbjct: 238 DLDSVRAGITLNEDDLRTYYKENLTRLAGKEERRASHILINASKDAPAADREKAKARATQ 297
Query: 287 --FQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
Q K F ++A++ + L F + + + KKGD +
Sbjct: 298 LLEQVRKAPATFAEVAKKSSDDTGSAPAGGDLNFFGRGAMVKPFEDAAFAM--KKGDISD 355
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
V+ FGY I +++IK +F+E++ + +++ +A K E +
Sbjct: 356 VVETDFGYHIIMLTDIKTPRQPNFEELRPSMEAELKQQQAQRKFAEVAESFANGVYEQSD 415
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ ++ + K+ V + G K + V +
Sbjct: 416 SLKPVAEKLKLKVQTATGVTRS--PAPGATGPLANGKLLEALFSAESLENKRNTEAVEVG 473
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
++ AR L+EV V+ + K+AE + + +
Sbjct: 474 PSQMAAARVTAYTAARTLPLDEVRARVRTLYVAEKSAELARKEGEAKLAAWKS------- 526
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
A L ++R +N+ + V + + + Y V KVT
Sbjct: 527 -AAGNPAGLQAAVVVSRDQPQNQ--PRPLVDAVLGASTAALPAWVGVDLGAQGYAVAKVT 583
Query: 578 NSKVGPVQEKD---KFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + Q + + LK ++ V +
Sbjct: 584 RIVPRDAPNEQVARQERQQYLQWWSNAEGLAYYELLKERFKVQI 627
>gi|229846060|ref|ZP_04466172.1| lipoprotein signal peptidase [Haemophilus influenzae 7P49H1]
gi|229811064|gb|EEP46781.1| lipoprotein signal peptidase [Haemophilus influenzae 7P49H1]
Length = 622
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 107/641 (16%), Positives = 241/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNSVYQRILQQNRLTSDGYASILRASLPLEQIQNGVANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISKNLQVTDVEIAQYYQDNKAQF---MTQRLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ ++ + LG + +P + + G ++ I+ Y I
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAD 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + + + + + + + + D + V++ +
Sbjct: 409 VKVQESGYFSRQNVPAGLNFPNVIYTIFES--DSTNIGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSENPES-----KIDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S E + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + V+D+ I + + ++
Sbjct: 582 AMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQDDEAQQ 622
>gi|148826351|ref|YP_001291104.1| lipoprotein signal peptidase [Haemophilus influenzae PittEE]
gi|148716511|gb|ABQ98721.1| lipoprotein signal peptidase [Haemophilus influenzae PittEE]
Length = 622
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 107/641 (16%), Positives = 241/641 (37%), Gaps = 29/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML E + + + ++K L ++ V FL+ G+S LFS S + V + + F+N
Sbjct: 1 MLIEKMHNLTNSKISKFILGLITVSFLVGGMSGYLFS-SNDTYAAKVNGEVISQQDFLNR 59
Query: 60 WKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ QE + +Q+ G + L + I++ ++ L Q+++++ L +
Sbjct: 60 YNQEFEIRAQREGEAFMGQSDSPEFVTALRQNIVNLMIDQELLRQYVKELKLGVSDEMIK 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F K KF + V+ L + + Y L +
Sbjct: 120 RAIVTDPNFQVKG-KFDNSVYQRILQQNRLTSDGYASILRASLPLEQIQNGIANSEFIVP 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + +F+ R L+ A S+ + ++E + ++ PE ++ YI
Sbjct: 179 AQVKNSAEIFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEANQKSFVQPEQVKVQYID 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K +++++ E+ Y+ NK ++ + + + F N+++A A++ L+KG F
Sbjct: 239 LSADNISKNLQVTDVEIAQYYQDNKAQF---MTQRLAHIQFANEQDAKVAYEELQKGANF 295
Query: 297 IQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+A+ ++ + LG + +P + + G ++ I+ Y I
Sbjct: 296 ADVAKTKSLDKISGENGGDLGWVNANELPKAFEDAAA--ALQVGQYSQPINVDGNYHIVL 353
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V K S + VK IA+ +R + + K+ + + + +
Sbjct: 354 VQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAFEDSKSLNTA--AQAAD 408
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + + + + + + + + D + V++ +
Sbjct: 409 VKVQESGYFSRQNVPAGLNFPNVIYTIFES--DSTNIGMNSEPINVGDYHTIIVRVLDRK 466
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ LEE D++ K K ++ KA Q V + S+ ++ K G + +
Sbjct: 467 AEGVKSLEEAKIDIETFLKRQKAENVLNEKAQQAVKKLSENPES-----KIDGINFSSEQ 521
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--KF 590
+N++ S E + + VV + + G + EK+ +F
Sbjct: 522 TFTLSENKDPILTNGIFSIAKPKSNEALYQVVHNSNGDVVVVALNKVEQGSLSEKELSQF 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
L + +L +I L+ + + V+D+ I + + ++
Sbjct: 582 AMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQDDEAQQ 622
>gi|94497171|ref|ZP_01303743.1| hypothetical protein SKA58_13253 [Sphingomonas sp. SKA58]
gi|94423276|gb|EAT08305.1| hypothetical protein SKA58_13253 [Sphingomonas sp. SKA58]
Length = 650
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 135/642 (21%), Positives = 258/642 (40%), Gaps = 20/642 (3%)
Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSV---SGSSTVVSVGRQKVPF 53
ML + R+ + A +FL V+ F++ ++ F SG T K+
Sbjct: 1 MLSVFRRIIHSKFGAIFAFLFLGVIAAAFILGDVTSGQFGGASLSGGGTAAKAKGYKLTV 60
Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
+ + ++ + + + G ++ D LV TL + +D G+
Sbjct: 61 AELQDRVQRVFENARRSS-PELQIGEFFAQGGGAQVFDQLVQSLTLRAYADDQGIHISKR 119
Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
V +IA+ P F FS+D F + LARE ++E+ D ++ + + ++ G R
Sbjct: 120 LVDAQIAQIPAFQDAAGNFSNDNFRALLARERLSEQALRDDISREILQRQLLAPIGIGAR 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
PS L+ E R + DP++A L +++K D + PE +RI
Sbjct: 180 PSENLVLPYASLLLEARQGQVAAIPAVAFLDDKDPTDAQLADFYKKNSDRFTIPEQRRIR 239
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
Y + D + S+ E+ A Y +NK Y + E R+VEQLV P + A +K G
Sbjct: 240 YAVVDAERFAQASMPSDAEISAYYNQNKANYAASENRSVEQLVLPTEAGAKAIAAQVKAG 299
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF--SLAKKGDFTPVIHGSFGYVIA 351
K Q A+ G S+S +L + S+ + + A++G+ + G G+++
Sbjct: 300 KSLPQAAQGAGLSVS--TLDAQSRGQLTSATSKAVADAVFAARQGELIGPVRGPLGWLLL 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
V+ ++ V+ +I +R+ K + + + +LE+ +A G + DE+++ +
Sbjct: 358 RVTAVQDKPARPLAAVRDEIVKTLRVQKEKQLLGDFTAKLEDQIADGGTFDEVAKDNGLK 417
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
P + GK VK A + LL F PD Y + +
Sbjct: 418 LETTPPLLATGKQVKDMAYVAPADVQPLLSPAFTMSADDDAQLVPITPDKRYALIAPGQI 477
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
I A L EV + V+ +K ++ + A Q+ + +K G D G L
Sbjct: 478 IAAAPPPLAEVKSLVQAQYKLNAGNQKAKALAEQIRAKVAK-GTKLADAISQAGVKLPAP 536
Query: 532 NQINRMDNE---NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ--- 585
+ + + +S +F+ VK PI G Y V ++T + G +
Sbjct: 537 QTLGGRRADIMRAEQRPPAEVSILFAMAENSVKTLPISEGRGYFVVQLTKIERGDAKGNP 596
Query: 586 -EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + +++ ++ + ++ + VT + +++
Sbjct: 597 QLLAQVRDQMGEVIGQEYGEQFERAVEKELGVTRNPKAVEQV 638
>gi|254476823|ref|ZP_05090209.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. R11]
gi|214031066|gb|EEB71901.1| putative peptidyl-prolyl cis-trans isomerse D [Ruegeria sp. R11]
Length = 613
Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats.
Identities = 117/633 (18%), Positives = 244/633 (38%), Gaps = 32/633 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M ++K S+T+V I + +L V +G + SV V VG Q+V +
Sbjct: 1 MAAGMKKLSKTFV-WILMGMLIVGLAGFGAVNFTGSVGS---VAVVGEQEVSVDDYAREL 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++E + + G + + ++GLD+ +L L++ A LDQ D+GL ++ EI+
Sbjct: 57 QREQRALEAQTGQRMPIAQLTTLGLDRVVLGRLIAIAALDQESSDLGLSIGDENLFEEIS 116
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
R F FS + + L G+NE+ + + +RT V G + G + L D
Sbjct: 117 RIEAFQDPAGNFSRENYQFALENIGLNERAFEADLRRESARTLVQGAVMVGTEMPDTLRD 176
Query: 181 QAKRFYFENRSVDY-IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ RS D+ ++ +P+ L +++ D + P K I+Y
Sbjct: 177 TLTNYIGARRSFDWLVIDPASIALTAVEPTEEELRAFYDANIDQFTLPRTKVITYAALRP 236
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK-EADEAFQSLKKGKKFIQ 298
+IE+ LQ + ++Y PE R VE+LVF +Q A Q G F
Sbjct: 237 DALVDEIEVDEAALQQLFNDRSDEYQVPERRLVERLVFADQDAAASAKAQLDINGTTFEA 296
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
L E +G +L DI +G + + + A+ G + G + V+
Sbjct: 297 LVENRGLTLQDIDMGDVTMGDLGTAAQ---DVFSAEVGTVVGPLDSDLGPALYRVNGRLE 353
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ +V+ ++ ++ +A ++ + + + LA G +++E+ + + +L +
Sbjct: 354 ARVTQLDDVRDELRAELATDRARRLIETRAEDINDMLAGGATLEELEQEPGM---ELGQI 410
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D+ G V L DGS +++ E + R
Sbjct: 411 DWHTGSSDGI------AAYDGFRSVASAVTIEDFPEVEFLEDGSLFALRLDEELEPRPEP 464
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
E+ ++ W+ + E + ++A++ V + G + + L + + R
Sbjct: 465 FEDAQDKLRAAWQDNRLQEAMKAEADR-VAALLRSGDDLPE-----DLILTSEEGLTRTA 518
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN-----SKVGPVQEKDKFISY 593
+ + + +VF V + + + V ++ + +
Sbjct: 519 FI-EAAPQEMMIRVFDMAPGDV--AVVSDPRATAVVRLIEELPVAETPEMAALSEAMGTQ 575
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L Q + + L ++ + ++++ + + +
Sbjct: 576 LDQALAQALFEAFVQDVQTRAAPRIDPQALSAV 608
>gi|209521454|ref|ZP_03270162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
H160]
gi|209498110|gb|EDZ98257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
H160]
Length = 644
Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats.
Identities = 93/643 (14%), Positives = 219/643 (34%), Gaps = 39/643 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + + ++V+ G+ ++ V SV K+ + ++
Sbjct: 1 MLDFFRTHQR-LMMFMLILVILPGLGFVGIQGFRGFFDENANVASVNGHKITRVEYDDAM 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L Q +G + + + + +LD ++ L + + L A V +
Sbjct: 60 RQQLDRGRQMLGAQFDMKSFDTPERRRMMLDGMIEQRVLADETQRLHLTASDDAVRRTLM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D D + LA +G+ +Y + L+ + S
Sbjct: 120 SDPVISSLKNPDGSIDLDRYKQLLAMQGMTPDQYDERVRYNLAMQQLPASIEASAFTSKT 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + R V I + A P++A L +++ +++++ P I Y++
Sbjct: 180 LAQHLTELAQQQREVQGIAFHPHDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ S+ +L+ Y+ N + + ++ K+A A ++ K
Sbjct: 240 SPATLSASMQPSDADLKKYYDDNIAHFRTEGEVRASHILIAAPKDASAADKAKAKQTAEE 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + LG F + I D KK + +
Sbjct: 300 LLAQVKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAAFALKKDEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ FG+ I V+++KP+ T SF EVK IA +++ A++ + + +
Sbjct: 360 IVQSDFGFHIIKVTDVKPTVTKSFDEVKDQIAKELKTQLATKAFTDSSEGFTSLVYEKAK 419
Query: 401 M-DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + K+ + + P +F + + +
Sbjct: 420 TLQPAADKFKLQIQTATVTPQPDAKLPPDSPLNNPKFLAAVFANDSVSAH-NNTQAIDVG 478
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + + ++ + PA + V V++ ++ E + E+ K
Sbjct: 479 NNTLIAARVTDYKPAAVPAFDAVKDAVRQKVIAEQSNEAAHKDGIAKLAEFEKSKST--- 535
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
G S + + N+ + +S ++ + + + + Y +++V
Sbjct: 536 ----TGLS----SPLKVSRNDAQGVPPAALSAIYKVDAQKLPAYVGVDLGDDGYAIYRVN 587
Query: 578 NSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q+ + ++ + L+ + SV
Sbjct: 588 QIVPPAATDAQHLAAAQQQIAQVDAQSQAEAYLKALRERSSVK 630
>gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isomerase D [Herbaspirillum seropedicae
SmR1]
gi|300074334|gb|ADJ63733.1| peptidyl-prolyl cis-trans isomerase D protein [Herbaspirillum
seropedicae SmR1]
Length = 639
Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats.
Identities = 107/641 (16%), Positives = 228/641 (35%), Gaps = 39/641 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + IR R + + L+ +F F +GL ++ + V V Q + + +
Sbjct: 1 MFDFIRTHQR-LMQFLLLLFIFPSFAFFGLEGY-SRLTDDNGVAKVAGQTITKEEWDAAH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L + Q G +S+ S + ILDNL++ L + L + I
Sbjct: 59 RQQLERMRQVYGNQFDSKIFDSPQARRAILDNLIAQRALGAEVVASKLVVPDQVLQQSIL 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P D KF ++ + LA +G+ K Y + ++ + + +
Sbjct: 119 QIPGLTKADGKFDNEQYRVLLAAQGMTPKSYEAGLRREMAVQQLNAAIQTTAFAPKTVAE 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R+V + + S+ +L +++K + PE I Y++ D
Sbjct: 179 NLSALNDQERTVQMLNFKPDSYASQVKLSDEMLKDYYDKNSARFETPEQADIEYVVLDAA 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------------F 287
+ +++D+++A YE+NK+ Y + E R ++ +K+A A
Sbjct: 239 AVAAQAAVTDDDIKAYYEQNKKLYATEEQRRASHILIAVKKDASAADQAAAKSKAEGLVA 298
Query: 288 QSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
Q K +F +LA+ + + LG F K + + K+G+ + +
Sbjct: 299 QLRKNPGEFAKLAKANSQDPGSAENGGDLGYFGKGAMVKPFEDAA--FSLKQGEISDPVQ 356
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMD 402
FGY I V+ IKP+ + VK +I ++++ A++K E + G S+
Sbjct: 357 SDFGYHIIEVTGIKPAAVKPLESVKAEIGSEIKKQIAAKKYSEMADQFNNLVYENGDSLK 416
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+S + K+ V G LF V +
Sbjct: 417 AVSDKLKLKIQTATGVTRTPNPAAGPLPYNNAKFLTALFT-DDVIKAKHNTEAVQTAPNT 475
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ ++ P R +EV DV+K + + + + K
Sbjct: 476 LVAGRVTSYKPVTKRPFDEVKADVQKAVLAQQEQLLAVKAGQERLAQLQ---------AK 526
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSK 580
+ A ++R+ + + + V + + G+ Y +++++ +
Sbjct: 527 DDAAGFSEAKVVSRVKADGWT--QEAFNAVMKADTAKLPAYVGAETPGMGYQIYRISKVE 584
Query: 581 VG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + +++ S + YL+ + +
Sbjct: 585 QPKTVDAARRQAEREQIASALSQQEALSYLDYLREKAKTKL 625
>gi|163746559|ref|ZP_02153917.1| peptidyl-prolyl cis-trans isomerse D, putative [Oceanibulbus
indolifex HEL-45]
gi|161380444|gb|EDQ04855.1| peptidyl-prolyl cis-trans isomerse D, putative [Oceanibulbus
indolifex HEL-45]
Length = 614
Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats.
Identities = 119/597 (19%), Positives = 239/597 (40%), Gaps = 27/597 (4%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
++ SVG + + + +QE+ I + G ++ RA+ +GLD+ +L +V
Sbjct: 33 SGNLRSIGSVGDKSISVDQYARQLQQEIRAIEAQTGESLSFARAQEMGLDRAVLQRIVRN 92
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
LD ++G+ + EI F G D F + + L + G++E E+
Sbjct: 93 RALDHEAAEMGISIGDATLRDEIVAISAFQGIDGNFDREGYRFALQQSGMSEAEFETSIR 152
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215
+ +R + +GG+ + + E RS + L+ + +P+ L
Sbjct: 153 EESARGLLQRAVLGGVSMPDTYARTLVDYVAEERSFTWARLSADDLDTPVAEPTEEELQA 212
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
+++ D++ P K I+Y + ++E+ +EL+AEY+ +Y PE R VE+L
Sbjct: 213 YYDANADDFMLPASKSITYAWLRPEDLLDEVEVPEEELRAEYDARSSEYDQPERRLVERL 272
Query: 276 VFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
VF NQ+ AD+A +L+ G F L EE+G +L+D+ +G +K + A+
Sbjct: 273 VFANQEAADQAAAALEVDGTTFEALVEERGLALADVDMGDVAKSDLDGAG---DAVFSAE 329
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
G + S G + V+ I P+ V F+E ++ + + I++A+ V+ + +++
Sbjct: 330 SGAIVGPLPSSLGPALFRVNAILPAQNVPFEEAREVLEETLAISRATRAVEARAQEIDDR 389
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
LA G +++++ + K+ + + + + D
Sbjct: 390 LAGGATLEDLGKETKMNLGTIDWTEDSSDGIAAYGAFREAAAGLSADAFPQIDQ------ 443
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
L DG +++ E+ P R + +V+ W+ + E +++KA L + + G
Sbjct: 444 ---LDDGGIFAMRLDETKPERPNPFDAARAEVEAAWRNAQIVEALTAKAENLTADLADGG 500
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+ G + R + + QVF V P G VV
Sbjct: 501 D-----FEAAGLEPQLGEGMTRSSYVDGT-PDTFMDQVFDLDEGGVAVLPA--GDHVVVL 552
Query: 575 KVTNSKVGPVQEK-----DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+V + ++ D+ L Q + + L D + + +
Sbjct: 553 RVDSVTAAGENDQTQALMDRLSQQLDQALAQGLFDIYSNAVMRDADPQIDQRAVSAV 609
>gi|56697010|ref|YP_167372.1| hypothetical protein SPO2145 [Ruegeria pomeroyi DSS-3]
gi|56678747|gb|AAV95413.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
Length = 614
Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats.
Identities = 119/626 (19%), Positives = 243/626 (38%), Gaps = 28/626 (4%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K+ I + +L +G A+ TV VG Q V ++ ++E+
Sbjct: 6 KSLSKTFVWILMGLLIAGLAGFG---AVNLSGTVRTVAQVGEQTVSVDAYARELQREIRG 62
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
I + G + + R +G+D+ +L LV+ A LD + +G+ + EI + P F
Sbjct: 63 IEAQTGQPLQMSQVRDLGIDQAVLARLVAIAALDNEVAGLGISIGDENLSREIVQIPAFQ 122
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
G D KF + + L G++E E+ + +RT V G + G+ + D +F
Sbjct: 123 GVDGKFDPEGYRYALDNAGLSEAEFEADLRRESARTLVQGAIMEGLVMPDTYADTLAQFV 182
Query: 187 FENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
RS ++ + + P A + ++ +D + P KR++Y L +
Sbjct: 183 GARRSFTMATVDTGALDSPVAAPDAAQIEAFYADNQDQFMLPRSKRLTYALLTPEMLLDR 242
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVF-PNQKEADEAFQSLKKGKKFIQLAEEQG 304
+E+ ++ YE+ + Y PE R VE+LVF Q G F L E +G
Sbjct: 243 VELDEGAVRRLYEERESSYQQPERRLVERLVFADQASAESAMAQVEVGGATFELLVEGRG 302
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
SL+D+ +G + + + + A+ GD + G + V+ + +F
Sbjct: 303 LSLTDVDMGDLTAQDLGAAA---EAVFAAEVGDVVGPLPSDLGPALFRVNGTLDARITTF 359
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
+ V+ ++ +++ +A ++ + L + LA G +++E+++ ++L +D+
Sbjct: 360 ESVEAELRDELAGERARRLIEAQAESLNDMLAGGATLEELAQD---TDMELGQIDWTEDS 416
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
G V + L DG+ +++ E + R L+
Sbjct: 417 SDGV------AAYAGFRAVATEVAEGDFPEIGFLEDGAVFALRLDEELEPRPEPLDSARE 470
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
V W +T + KA + + +G G N + R +
Sbjct: 471 RVIAAWTAAETRRALQDKAASVATGLATDGD-----FTATGLPHRVENGLTRTAFIDGT- 524
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI----SYLTQMMNK 600
+D + QVF+ +K ++ +++V E + + +TQ + +
Sbjct: 525 PFDFMEQVFAMQPGDLKVIAGDD-AAFIVRLEEELPPADTDELTQMKRALSAQMTQALAQ 583
Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRY 626
+L D + +++ T+ +
Sbjct: 584 NLFDIYVRDAQTRAQPTLDQRALNAV 609
>gi|319792645|ref|YP_004154285.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus
EPS]
gi|315595108|gb|ADU36174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
EPS]
Length = 638
Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats.
Identities = 98/644 (15%), Positives = 218/644 (33%), Gaps = 47/644 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + RK ++ V +++ F+++G+ V + + +
Sbjct: 1 MFDFFRKYNK-IVMIFLFLLIIPSFVLFGVERY-QGSGRDEKVAHIEGGDITKPEWDAQH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E I Q+ V+ S L L+ +V L + R+ A
Sbjct: 59 RIETDRIRQQS-PNVDPTVLDSDALRYATLERMVRDRVLAAAAAKANMTVSEDRLSRIFA 117
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P F D KF + F L G ++Y +S V+ G
Sbjct: 118 QDPGLASFRTPDGKFDRETF---LRVTGRTPEQYEAQVRADMSTQQVLLGVSGTALTPPA 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+ +++ R + + S+A + +++ + ++APE I Y++
Sbjct: 175 LVAATVNAFYDRREIQVARFAPDGFASKVTVSDADIEAYYKDHTSQFQAPEQANIEYLVL 234
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ +K + ++ +L+ YE+N ++ + E R ++ A + K K
Sbjct: 235 DLDAAKKNVVVNEADLKTYYEQNTARFGTKEERRASHILITAPASMSAADREKAKAKAEQ 294
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + L +K + + KKG+ +
Sbjct: 295 LLAEVKKAPNTFADVARKNSQDPGSAEKGGDLDFVTKGAMVKP--FEDAMFALKKGEISG 352
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGT 399
V+ FGY I H+ +IKP+ F++V+ I +++R +A+++ + + +
Sbjct: 353 VVETEFGYHIIHLVDIKPAVVPPFEQVRATIESEVRAAQAAQEFAKAAEVFTDAVYQQPD 412
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ + + K+ V G + + + +
Sbjct: 413 SLKPAAEKLKLTIQTATNVPRT--PAPGAKGPLASRNFLSALYASDSLERKQNTEAIEVG 470
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
++ + PA L EV ++ T + A ++ + ++
Sbjct: 471 SSQLASGRVTQYTPAHPIPLAEVKDKIRAQLVTERAAVLAKTEGEAKLAAWT-------- 522
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
K GA+ ++R+D +++ I + + Y V +VT
Sbjct: 523 -AKADGATFAAPVTVSRIDAQSQPMP--VIDAALRANAAKLPSLVGVDLGAQGYAVVRVT 579
Query: 578 NS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P ++ + + + Q + D+ LK ++ +
Sbjct: 580 KVVPRTPPPPEQAQQESAQVGQSVTAAEADAYYKLLKERFKAEI 623
>gi|319787632|ref|YP_004147107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoxanthomonas
suwonensis 11-1]
gi|317466144|gb|ADV27876.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoxanthomonas
suwonensis 11-1]
Length = 654
Score = 215 bits (545), Expect = 2e-53, Method: Composition-based stats.
Identities = 110/669 (16%), Positives = 227/669 (33%), Gaps = 61/669 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-------------- 46
ML+ +R S W A I + +L +PFL + + G++ V V
Sbjct: 1 MLQKLRDRSSGWAATIIIALLMIPFLFV-VDQSYLGGMGANNVAQVKAPPSWWKGAPGFW 59
Query: 47 ------GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++V F +Q + Q+ G + + ++ILD LV +
Sbjct: 60 PVSLLWEHEEVSVEDFRQRLEQARMLARQQQGEAFDPREFEGIENKRRILDELVDEKVML 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN--EKEYIDHYTKM 158
G+ V IA P F D KF + + L+ + +++ D
Sbjct: 120 LASARDGVVVSDAAVREYIASIPAFQV-DGKFDQNAYQMALSSQFPPRTPRQFEDLVRTT 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L ++ V ++ LD+ R E R V+ ++ ++A W+E
Sbjct: 179 LRQSLVPVGVGSSAFVTDAELDRLLRLSGETRDVELALMPEIAEDTTP-VTDADAKAWYE 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++ +PE I Y+ + + L+ YE K+++ PE R ++
Sbjct: 238 AHTADFMSPEKVAIEYVEVTALQVPEPAAADEATLRERYEAEKQRFGDPERRLASHILVR 297
Query: 279 NQKEADEAF----------QSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVS 324
+ D A Q+ G F LA E + LG + + +
Sbjct: 298 VPEGGDAAAAEAKAKQLAGQAAAPGADFAALAREHSEDPGSRDTGGDLGWVEQGMMVEP- 356
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ + G+ + + FG+ + + ++P F+EV++++A +
Sbjct: 357 -FEQALFAMQAGETSGPVKTEFGWHVLQLREVQPGALKPFEEVREELAREQAQADRERAY 415
Query: 385 KEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
E RL + +S++ + K+ L A + +
Sbjct: 416 SELLGRLTDLAYENPSSLEPAANELKLELRKLGPFSR-----DDMVGIAAAPEVKRAAFS 470
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
+ + + + + +++ E PA R L +V +V+ + +T++ + A
Sbjct: 471 EELVEDGTASDPIEIGPQHNVVIRVVEHQPAAARALADVRAEVEAAVRADRTSKAAIAAA 530
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
+ K G+ + + G ++ + R + +FS PV
Sbjct: 531 EAALERLRK-GEAMAAVVGSEG-EVMPLPGLPRGAPAPT---PEANRAIFSAPVPEEGKA 585
Query: 564 PIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
VF V G P +++ Q+ + I ++SQ+
Sbjct: 586 TFGRFALPDGRQAVFAVNAVHPGKPEELPQEQRAMLRQQFAQVDGATMAQDYIRRVRSQF 645
Query: 615 SVTVHDNLI 623
V V ++ +
Sbjct: 646 KVQVDESQL 654
>gi|294339748|emb|CAZ88110.1| putative Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase
D) PpiD [Thiomonas sp. 3As]
Length = 640
Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 107/644 (16%), Positives = 220/644 (34%), Gaps = 42/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IRK S+ + + V++F F+++G+ + VG Q + +
Sbjct: 1 MLESIRKHSK-LMQIVLFVLIFPSFVLFGIQGYSSFEGSADAAAKVGGQTISMQQLDAAN 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E+ + +G V+ ++ + + LD ++ L LE +V I
Sbjct: 60 RDEIARLQSMLGSAVDIKQLDTPEQKLRTLDGMIRQTLLQLEARREHLEVTDAQVQQAIL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P D F + S +A +G+N ++ + L V+ G + S
Sbjct: 120 QIPQIAALRKPDGSFDVQAYRSLIAAQGMNTAQFEAQVREQLILQQVLSGLAGSVIDSQA 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L A + + R V + A + + +++ ++ PE I Y++
Sbjct: 180 LATAAAKAAAQQRVVRLALFKPADYTAQVQVTPQEVETFYKNNTARFQKPESADIQYVVL 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
E I+++ ++ +A Y+ N K+ +P R ++ +A A Q K +
Sbjct: 240 SAAEVAAGIKVTAEQAKAFYDANLSKFSTPAERRASHILIAVPTDATAAQQEQAKARAEA 299
Query: 298 -----------------QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ +++ G + LG F+ + + AD++F + K G+
Sbjct: 300 IAKQVKANPAEFPALARKDSQDPGSAEKGGDLGYFTADAMVKP-FADAVFGMQKIGEIAG 358
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-T 399
I FGY I ++ IKP F VK I Q++ A +++ D + +
Sbjct: 359 PIKTQFGYHIIELTGIKPGAQQPFDAVKASIEKQLQQEAAQKQMSADVEAFTNAVFEHPD 418
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVAL 458
S + + + V + V+ + K + +
Sbjct: 419 SFQAVEDKLHLKVQSASNVTRTPQPAAPDAVSPLSSKAFLDALFAESSLRNKHNLQAIQI 478
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ ++ PA+ L +V T ++ K AE Q
Sbjct: 479 APNVWASARVLSFSPAQTLPLAQVQTQARQMLVDQKAAELARKAGEQ------------- 525
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576
+ + IN +S+ F + + Y V ++
Sbjct: 526 ALKSPATLTFGAPQTINLTQPT-PGVSPLIVSKAFGLSASKLPATAGVDLGAQGYAVLQL 584
Query: 577 TNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G P Q + Q + + ++++ I LK ++ V +
Sbjct: 585 DKVIEGQAPAQLISAAANAEQQALTQGVMNAYIEALKKRFGVEI 628
>gi|315499883|ref|YP_004088686.1| ppic-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
excentricus CB 48]
gi|315417895|gb|ADU14535.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
excentricus CB 48]
Length = 642
Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 117/634 (18%), Positives = 252/634 (39%), Gaps = 18/634 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+ R+ +++ KI + L + F ++G+ D LFS S VV G ++ + +
Sbjct: 1 MISSFRQFTKSLTFKILMAALILSFAVFGMHD-LFSRPSSRNVVDAGDRQTTTDDYRRQF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
Q Q+ G + E A GL +I++ L ++ ++ +GL V +IA
Sbjct: 60 DQWKTGAEQQSGQTLTYEDAVKQGLHVRIMEELADMDSVSAWLVKVGLRPSAKVVTDQIA 119
Query: 121 RSPLFHGK-DNKFSHDVFVSRLA-REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ P+F KF + LA + ++E ++ + ++ + V G++P +
Sbjct: 120 KYPIFFDSITGKFDKAKYQQELATQMKMSETKFEQIISDDIANRQFIEASVAGLKPPRIY 179
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
F E R +V+ ++ P++ L ++++ K+ R PE ++ + + F
Sbjct: 180 AALQSAFASETRDTTLLVVTPDNIEKPGQPTDVELKKFYDDNKERLRRPELRQFTVVSFA 239
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ K+ + EL+ YE ++ +PE RT Q+ P+QK A+ Q+L+ G
Sbjct: 240 PGDFASKVTVDEAELKKLYEFRRDTLSNPETRTFVQVTVPDQKAAEAVAQALRSGTDPKT 299
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
A+ ++ + + K+G+ + I GS G + VS I
Sbjct: 300 AAKANKGTVIAYDAKPKTAVA---DAKVADAAFALKQGEVSGPIQGSLGLAVVKVSGITA 356
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ F V+ + + + KA + + + E+ + G +++ + I+LP +
Sbjct: 357 ASVTGFDTVRGQLEAEYKADKAKDLAYKASEVFEKERSAGADFLAAAQKAGVRVINLPPM 416
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
G+ G+ P + + + L +G Y +++ E +P+
Sbjct: 417 TAEGQMGNGQPFQYAP-----ILKAAFDQPKGGETDVTELGNGEYFALRVNEVLPSEVPA 471
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
L+ + + + W+ + V++K+ + K G++ + ++G + T + R
Sbjct: 472 LDTIKPQMIQAWQQKTAGDRVAAKSEEAAARLRK-GESLEAVASSMGLKVETRAGLARQT 530
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
+ G + ++FS V + N + VV KVT G ++ + Q +
Sbjct: 531 APQQ-VGPELTGRIFSAKNNEVFTARL-NEMVSVVGKVTAINKGEAAAVNQASAMTGQAV 588
Query: 599 NKDLLDSVIAYLKSQY----SVTVHDNLIQRYLD 628
L + ++ + + L
Sbjct: 589 AYGLFQDLSFTMRKGARAAVKTKTNPDAAIAALG 622
>gi|149184601|ref|ZP_01862919.1| peptidyl-prolyl isomerase [Erythrobacter sp. SD-21]
gi|148831921|gb|EDL50354.1| peptidyl-prolyl isomerase [Erythrobacter sp. SD-21]
Length = 645
Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 121/646 (18%), Positives = 240/646 (37%), Gaps = 22/646 (3%)
Query: 1 MLEIIRKASRTWV----AKIFLVVLFVPFLIWGLSDALFSVS--GSSTVVSVGRQKVPFS 54
ML R +T + A FL ++ F +S+ G +V VG K+ +
Sbjct: 1 MLTFFRNFFKTKIGLAIALAFLGLIGFAFASMDVSNTGAFGGVAGGDSVAVVGGSKISTA 60
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ L ++ V + + G ++L+ L+ L + E+ G A
Sbjct: 61 ELNEAMDNALRRAREE-NPDVTMQTLIAEGEMDRVLEGLIDRYALMAWAEENGFRAGANL 119
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
V EI + P G F + + L I + + + V + G +
Sbjct: 120 VNSEIRQIPAARGPSGNFETAAYEAFLRNNSITDSQLRQQLRTTVYFQQAVFPALYGTQL 179
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
+ R + E RS + DP++A L++++ + + + PE + + Y
Sbjct: 180 PESIARTYARSFKERRSGGIATIPAALFAPQGDPTDAQLSEFYAENRSRFVRPERRTLRY 239
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
FD I S++++ A Y+ N E+Y + E R + QL+ P ++ A+ ++ G+
Sbjct: 240 ATFDSSALGGSINPSDEDIAAYYQDNAEEYAARETRNLTQLIVPTREGAEALAARVRGGE 299
Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
F Q A G + + S + A +G T S G+ IA V+
Sbjct: 300 SFAQAASSSGLRTTQLDGRERSDIRSAASQAVADAYFSASEGAVTAPARSSLGWHIARVN 359
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
++ P S EV+ I +R K + E +E+ LA G S+ ++ + D
Sbjct: 360 SVDPQPARSLAEVRDSIVEVLREQKRQRGIAELAVGIEDRLADGASLSSVASELGVELQD 419
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
P + +G +P + + D + +++ ++ + P+
Sbjct: 420 TPPLTDSGLIY--GTGERVPDMLAPVLEFAFQIDEGEPEIGALADQQTFLIYEVADITPS 477
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
L E+ +V +W+ V+ E AN+ VL +EG + ++ Q+
Sbjct: 478 AAAPLAEIRNEVTAEWRRVRGNEGAEEAANR-VLRRVEEGATLAEAVAAEEKAIGAPQQV 536
Query: 535 NRMDNENKFFG----YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-- 588
E G I+ +F K L + V + + + +++ D
Sbjct: 537 TYSREELARMGNTRVPAPIALLFGMAKGTAKKLEGSRDLGWYVVDLEDIVLEDLEDNDPL 596
Query: 589 --KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI----QRYLD 628
+ S + Q + + +IA ++S+ V ++ I ++ L
Sbjct: 597 IGQAKSQIAQAWGNEYGEQLIAAMRSKLGVERNEEAIAAVRRQLLG 642
>gi|261493077|ref|ZP_05989616.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261311256|gb|EEY12420.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 623
Score = 214 bits (544), Expect = 3e-53, Method: Composition-based stats.
Identities = 98/636 (15%), Positives = 228/636 (35%), Gaps = 28/636 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + + V KI ++ + F+I G+ L S ++V V +++ F N+
Sbjct: 1 MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQ--DNSVAKVNGEEISQQLFNNTL 58
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+E ++ ++G + + ++ +L+ L+ L Q+ +++ L ++
Sbjct: 59 NREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQYAKELKLGISADQIKS 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI S +F +D KFS++++ L ++ Y + + ++ + +
Sbjct: 119 EIVNSQMFQ-QDGKFSNELYQQTLRHNNLSADGYAAIVQEGMLQSQLQEGIINSDFNVPA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R V + S L ++E K APE + Y+
Sbjct: 178 QQALLAKLLLQQREVRLAEFSVAKEMENQTVSEQELRAYYEANKTKLLAPEKLAVEYVTL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ E K+EI+N+++Q Y++NK Y + + + ++ EA Q+LK G+ F
Sbjct: 238 SPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQALKNGEDFA 297
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+ + + LG P + + G + + Y I V
Sbjct: 298 TLAKNKSSDTLSANNGGDLGWAKAGTFPKA--FEDAVANLTAGQMSAAVKVDNAYHIIKV 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412
KP + +VK IA +R + + + +S++E+++ +
Sbjct: 356 LERKPEQVIELAQVKDKIAQTIRQELVLTEYSTVAREMANKAFENNSSLEEVAKAGNVEL 415
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
L + + + + + ++V++ +
Sbjct: 416 QKTDLFTRENVPTALQNEKVLKVLFEG--ELRQNKQNSDALDVGNDANPQTLFVRVSDYD 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
R + +E V+ K K + + +K + V ++ K++
Sbjct: 474 AERPQTFDEAKAAVENFVKAEKAEKALLAKVEENVKALNEG--------KSVDVKFNAPQ 525
Query: 533 QINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
+ M E + +F+ + V+ + N G ++
Sbjct: 526 TLVYMQAEVE--NPVLAGTIFAMKKAQDKTTYQMARNQKGDVVIVALDNITEGNAEQFKT 583
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
Q L + + L+++ S+ V+++ +Q+
Sbjct: 584 LAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQ 619
>gi|121604540|ref|YP_981869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
naphthalenivorans CJ2]
gi|120593509|gb|ABM36948.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
naphthalenivorans CJ2]
Length = 645
Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats.
Identities = 111/644 (17%), Positives = 225/644 (34%), Gaps = 43/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + IRK ++ W + +++ F++ G++ S G V V ++ +
Sbjct: 1 MFDFIRKHTK-WTMALLFLLIVPSFILVGMNSNPSSEKGG-VVAKVDGTEITQPEWDREH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+E+ + + ++++ S L+ +V + E + L + E+
Sbjct: 59 LKEVDRLRASM-PTLDAKLLDSPEARYATLERMVRDRVVAVAAEKLKLSTSDQHLARELQ 117
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
SP D D + L +G++ + + + LSR V+ G SN
Sbjct: 118 NSPEIAALRRADGSLDMDRYRQLLGTQGMSPEMFEANVRTDLSRRQVLAGVSGSGFASNS 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D A YFE R + N A P++A L Q+++ + ++APE I Y+L
Sbjct: 178 AADMALNAYFEKREIQLARFNAADYAAKLTPTDADLEQYYKANEKLFQAPEQASIEYVLL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ +K I ++ +L+ YE+N + E R ++ K A + K K
Sbjct: 238 DLEALKKGIAVNEADLKTYYEQNARQLSGTEERRASHILITASKTASPEEREKAKTKAEE 297
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + + L F++ + + KGD +
Sbjct: 298 LLATVKKSPENFADVARKNSQDPGSATNGGDLDFFARGAMVKSFEDAAFSM--NKGDISE 355
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
V+ FGY I +++IK +F+E++ + +++ +A +K E +
Sbjct: 356 VVASDFGYHIIKLTDIKAPKQRTFEEMRPQLEAELQKQQAQKKFSEAAEAFSNGVYEQSD 415
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ ++ R K+ V + G A K + + +
Sbjct: 416 SLKPVAERLKLEVKTAGNVGR--QPASGVTGALANPKFLTALFSPDSIEKKRNTEAIEVG 473
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ +I + PAR + L +V +V++ W ++AEE + E+
Sbjct: 474 PSQLVSGRIVQYTPARTQPLADVKDNVRQRWLAQRSAEEARKDGVAKLTEWKAAPSTATA 533
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
+ T+ I + + + + F + Y + KV
Sbjct: 534 L----------TSPILVSREQAQQLPVQVVDAALRADTGALPIFSGIDLGAQGYAIVKVN 583
Query: 578 NSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ S Q + LK ++ +
Sbjct: 584 KVVPRDAPLEAAAKQERSQYGQWWTSAEALAYYNGLKDRFKAEI 627
>gi|291287880|ref|YP_003504696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
acetiphilus DSM 12809]
gi|290885040|gb|ADD68740.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
acetiphilus DSM 12809]
Length = 633
Score = 214 bits (543), Expect = 4e-53, Method: Composition-based stats.
Identities = 103/646 (15%), Positives = 238/646 (36%), Gaps = 46/646 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVP---FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ +R + ++ V+ F +WG+ D + V + F
Sbjct: 1 MISSLRNKKKLITFSLWFVIAAFVGTIFFVWGVGDKV---QSQLYAAKVDGVTITDQEFR 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + Q G ++ E + L+K +++ L++ L + + A V
Sbjct: 58 DKVENTRNQFRQLFGNNID-EILKGDTLEKTVMETLITETLLRNEANRLNIPASDAEVAA 116
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I F D +F ++V L+R + + + + ++ + + + S+
Sbjct: 117 NIQSVQAFQ-TDGQFDQQLYVQLLSRNRLTPQIFESSIRRDITLKKIEDLIRQSVAVSDQ 175
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++Q + ++ Y+ L + + ++ LT +F+++K+ YR PE Y+ F
Sbjct: 176 EVEQEFIYQNTVATIRYLELGADNFIGNVEITDNALTAFFDEHKEQYRVPEKADFKYVTF 235
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADE 285
D + + S+ E++ + +NK + PE ++F ++A +
Sbjct: 236 DPETYKGEFITSDKEIENYFIQNKASFNEPERVRAAHILFRVENWDDEKAATEIYQKAKK 295
Query: 286 AFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ + G F ++AE+ + + LG F++ + + G+ + V+
Sbjct: 296 VRKEIVDGADFAKMAEKYSEDSTAQNGGELGFFTRGQMVPEFENAA--FTTNPGEVSDVV 353
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
FG+ I +V PS + EVK +IA ++ K++ + + + +++
Sbjct: 354 KTQFGFHIINVEEYIPSTDPTLDEVKDEIAALIKDQKSASSFRTHVYDTYKAILDKSNIT 413
Query: 403 EISRREK--IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + + ++ + AG + A+ + L + + + +
Sbjct: 414 AYNEQAETPLPVREIKGLTAAGNVEPLNGMPAVAKRLLALTKS-------EISQVLEVGE 466
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
M ++ E + +LE++ V D+ VK+ E +KA + E D
Sbjct: 467 PK-MIFEMTEKYDSYIPELEDIKEQVTADFVKVKSLELAKAKAVEA-----SELDTMDDA 520
Query: 521 GKNLGASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
L S TT + R D N + +F G + + +V +
Sbjct: 521 ANTLKESYTTTPKFKRTDPINGLGMNARLMGDIFKAEPGDFIKDVYTVGSNVYIVQVKDI 580
Query: 580 KVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
Q K++ S L + + + S + LK+ + ++
Sbjct: 581 IKPDIATMDDQTKEQIKSSLFGVKSNQAVQSYVENLKANAKIEINP 626
>gi|91783524|ref|YP_558730.1| putative PpiC-type peptidyl-prolyl cis- trans isomerase
[Burkholderia xenovorans LB400]
gi|91687478|gb|ABE30678.1| Putative PpiC-type peptidyl-prolyl cis- trans isomerase
[Burkholderia xenovorans LB400]
Length = 645
Score = 214 bits (543), Expect = 4e-53, Method: Composition-based stats.
Identities = 98/642 (15%), Positives = 222/642 (34%), Gaps = 37/642 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + + ++V+ G+ S+ V SV K+ + + ++
Sbjct: 1 MLDFFRNHKR-LMMFMLILVIVPGLGFVGIQGFRGFFDESANVASVNGHKITRAEYDDAM 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L Q +G + + + ++LD L+ L + + L A V +
Sbjct: 60 RQQLDRARQMLGAQFDMKSFDTPERRSQMLDGLIEQRVLADETQRLHLTASDDAVRRVLL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D D + LA +G+ +Y + ++ + G S
Sbjct: 120 NDPVISSLKNPDGTIDVDRYKQLLAMQGMTPDQYDERVRYSIATQQLPASIQGSAFTSKT 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + R V I + R A P++A L +++ +++++ P I Y++
Sbjct: 180 LAQHLTELAEQQREVQGIAFHPRDYAAKVQPTDAQLQAYYDAHRNDFATPATATIQYLVM 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ + +L+ Y+ N Y ++ K+A A ++ K K
Sbjct: 240 SPATLAASVQPGDADLKKYYDDNIAHYRVEGQVRASHILIAAPKDASAADKAKAKQKAEE 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + LG F + I D KK + +
Sbjct: 300 LLAQIKAHPDQFAQIAQQNSQDPGSASKGGDLGYFGRGMIAGGQAFDDAVFALKKDEVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ FGY I V+++KP+ T F EVK I+ ++ AS+ +D + +
Sbjct: 360 IVQTDFGYHIVKVTDVKPAVTKPFDEVKDQISKDLKTQLASKAFTDDSEGFTSIVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + + + V + K + + +
Sbjct: 420 SLQPAADKYKLQLQTATVTPQPDPKLAPDSPLNNAKFLAAVFASDAVTAHNNTQAIDVGG 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + A L+ V V++ V++ E + E+ K
Sbjct: 480 NTLIAARVIDYKAAAVPSLDAVKDAVRQKVIAVQSDEAAHKDGAAKLAEFEKSKST---- 535
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
A + +++R D + +S ++ + + + + Y +++V
Sbjct: 536 -----AGFSSPLKVSRND--AQGVPPAALSAIYKVDAQKLPAYVGVDLGDDGYAIYRVNA 588
Query: 579 SKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
G + + + Q+ + ++ + L+++ V
Sbjct: 589 VVAGAAVDPQRLAAAQQQIAQVDAQSEAEAYLQALRARSKVK 630
>gi|121594957|ref|YP_986853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
gi|120607037|gb|ABM42777.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
Length = 640
Score = 214 bits (543), Expect = 5e-53, Method: Composition-based stats.
Identities = 99/644 (15%), Positives = 216/644 (33%), Gaps = 43/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IRK S+ V + +++ F++ G+ FS GS V V + + + + N+
Sbjct: 1 MFESIRKHSK-IVMFLLFLLIIPSFILVGIDSNYFSG-GSPVVARVDGKDITQADWDNAH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E I + ++++ S L+ LV L +D+ + R+ E+
Sbjct: 59 RMESDRIRAQS-PGIDAKLLDSPQARYATLERLVRDRVLQVAAQDMHMLTSDARLARELQ 117
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + + +G+ + + LS V+G +G
Sbjct: 118 SIPQIAALKRADGTLDAEAYRALAGAQGLTPEGLEARIRQDLSVNQVMGGVMGSAFSGPA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
A F+ R + N + ++A L ++ + ++ E + Y++
Sbjct: 178 EARLALDALFQRREIQIARFNASAFVSKVVVTDADLEAYYTAHPAKFQQAEQASVEYVVL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ + I +S D+L+ Y++N + E R ++ K+A ++ K K
Sbjct: 238 DLDAVKAGITLSEDDLRTYYKENLNRLAGKEERRASHILINASKDAPADARTQAKAKAEE 297
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + S LG F + + + KKG+ +
Sbjct: 298 LLAQVRKAPGSFAEIAKKESQDPGSAPSGGDLGFFGRGAMVKP--FEDAVFSMKKGEISD 355
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
V+ FG+ I +S+IK SF+E++ + +++ +A K E +
Sbjct: 356 VVETDFGFHIILLSDIKTPRQPSFEELRPSLEAELKQQQAQRKFAEVAEAFANGVYEQAD 415
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ ++ + K+ V G + + +
Sbjct: 416 SLQPVADKLKLKIQTAEGVTRT--PAAGGAGPLANARFLEALFQSDSLQNKRNTEAIEIG 473
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
++ PA L++ V+ + K+AE + + +
Sbjct: 474 TSVLAAGRVTAYQPAMTLPLDKARDQVRAIYIAEKSAELARQEGQAKLTAWKAAPDAASG 533
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
+ L ++R +++ + V+ + + + Y V K+
Sbjct: 534 LTAAL--------TVSRDRLQDQ--PRSVVDAALRANVDQLPAWTGVDLGAQGYAVVKIN 583
Query: 578 NSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + Q + LK ++ V +
Sbjct: 584 RVVPRDGVDDARARMEREQYLQSWASAEALAYYDLLKQRFKVQI 627
>gi|84515600|ref|ZP_01002962.1| hypothetical protein SKA53_03041 [Loktanella vestfoldensis SKA53]
gi|84510883|gb|EAQ07338.1| hypothetical protein SKA53_03041 [Loktanella vestfoldensis SKA53]
Length = 613
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 111/629 (17%), Positives = 246/629 (39%), Gaps = 31/629 (4%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
+K A I + V+ V +G T+ +VG + + +++ + Q++
Sbjct: 3 QKKKTKIGAWIIVGVVLVGLAGFGTGGL---TGNIRTLGTVGDKDITVAAYQRNLDQQIR 59
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+S + G ++ ++A++ G+D++ L +V TLD +G+ A V+ I+ F
Sbjct: 60 ALSAQFGTQISFQQAQAFGIDRQALSQVVQTRTLDNEAARMGISAGDLAVFDRISAIGAF 119
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
F+ D + L + G +E E+ + L+RT + V G+ + D R+
Sbjct: 120 QSAGG-FNRDTYRLVLQQSGQSESEFEAEIREDLARTLLQAAIVSGVPGAAASADALVRY 178
Query: 186 YFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
E R V + ++ + A ++A +T ++E D + PE + I+Y +
Sbjct: 179 VAEARDVTVLRVSADMLTAPVPGATDADITAFYEANGDEFLLPEAREITYAWMTPAMIQD 238
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303
++E+++ ++ Y+ + PE R VE+L + + A A L G F L E+
Sbjct: 239 QMEVTDLAIETLYQDRIADFVQPERRLVERLNYADPAAAQLAGGRLASGDATFDALVTER 298
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
G +L+D+ +G ++ +P + A GD S G + V+ + + V+
Sbjct: 299 GLTLADVDMGDLGRDELPANTADA--VFTATPGDVVGPFPTSLGAALFRVNAVLNAQEVT 356
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
E D+ ++ A + +D+ R+ + LA G ++++++ R +V L + +
Sbjct: 357 LDEASDDLRAELAAEAARSVINDDFDRITDLLAGGATLEDLAERTDLV---LGQISWTPD 413
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
G + L DG +++ PAR L+++
Sbjct: 414 VTDGI------AAYDNFRAAAEALSEGAFPALEVLSDGGVFALRLDSVTPARVPPLQDIR 467
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
DV W+ + + ++A ++ + LG + + + R +
Sbjct: 468 ADVAARWQLQAQQDALLARAAEIAADL-----TADTDLAALGMTPRVESNLTRRSFV-EG 521
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP------VQEKDKFISYLTQM 597
VF+ + NG ++ ++ ++ +
Sbjct: 522 MPEGFNDAVFALAPGEARVEDAGNGA--LIVRLDAITDADPTATDQAAQRASISDSIAAG 579
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ +DL D+ + ++ +T++ +
Sbjct: 580 IAQDLFDAYVQAVQQATRITINQATVDAV 608
>gi|222110395|ref|YP_002552659.1| ppic-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
TPSY]
gi|221729839|gb|ACM32659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
TPSY]
Length = 640
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 99/644 (15%), Positives = 216/644 (33%), Gaps = 43/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IRK S+ V + +++ F++ G+ FS GS V V + + + + N+
Sbjct: 1 MFESIRKHSK-IVMFLLFLLIIPSFILVGIDSNYFSG-GSPVVARVDGKDITQADWDNAH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E I + ++++ S L+ LV L +D+ + R+ E+
Sbjct: 59 RMESDRIRAQS-PGIDAKLLDSPQARYATLERLVRDRVLQVAAQDMHMLTSDARLARELQ 117
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + + +G+ + + LS V+G +G
Sbjct: 118 SIPQIAALKRADGTLDAEAYRALAGAQGLTPEGLEARIRQDLSVNQVMGGVMGSAFSGPA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
A F+ R + N + ++A L ++ + ++ E + Y++
Sbjct: 178 EARLALDALFQRREIQIARFNASAFVSKVVVTDADLEAYYTAHPAKFQQAEQASVEYVVL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ + I +S D+L+ Y++N + E R ++ K+A ++ K K
Sbjct: 238 DLDAVKAGITLSEDDLRTYYKENLNRLAGKEERRASHILINASKDAPADARTQAKAKAEE 297
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + S LG F + + + KKG+ +
Sbjct: 298 LLAQVRKAPGSFAEIAKKESQDPGSAPSGGDLGFFGRGAMVKP--FEDAVFSMKKGEISD 355
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
V+ FG+ I +S+IK SF+E++ + +++ +A K E +
Sbjct: 356 VVETDFGFHIILLSDIKTPRQPSFEELRPSLEAELKQQQAQRKFAEVAEAFANGVYEQAD 415
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ ++ + K+ V G + + +
Sbjct: 416 SLQPVADKLKLKIQTADGVTRT--PAAGGAGPLANARFLEALFQSDSLQNKRNTEAIEIG 473
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
++ PA L++ V+ + K+AE + + +
Sbjct: 474 TSVLAAGRVTAYQPAMTLPLDKARDQVRAIYIAEKSAELARQEGQAKLTAWKAAPDAASG 533
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
+ L ++R +++ + V+ + + + Y V K+
Sbjct: 534 LTAAL--------TVSRDRLQDQ--PRSVVDAALRANVDQLPAWTGVDLGAQGYAVVKIN 583
Query: 578 NSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + Q + LK ++ V +
Sbjct: 584 RVVPRDGVDDARARMEREQYLQSWASAEALAYYDLLKQRFKVQI 627
>gi|328953890|ref|YP_004371224.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobacca
acetoxidans DSM 11109]
gi|328454214|gb|AEB10043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobacca
acetoxidans DSM 11109]
Length = 629
Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats.
Identities = 109/642 (16%), Positives = 229/642 (35%), Gaps = 38/642 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RK + +W + + V F++WG+ F + V V K+ + ++
Sbjct: 1 MLDFMRKHASSWFVTGIIGAIVVVFVLWGIGS--FRSAQFQEVAEVDGAKIYLPEYYKAY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +++G N E A+++ L ++ L ++ + Q +GL + I
Sbjct: 59 QNLVRNYQEQMGGESNEEVAKTLRLREQALGQMIDELLIKQASNRLGLNVTDAELRDYIR 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
R+P F + F+ + LAR + EY + + L +V + S L
Sbjct: 119 RNPAFADERG-FNEKRYHQLLARRRLPASEYEEQERQQLLVQKMVHFITSFAKISEADLQ 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+A R E V+Y+VL A + Q++E + + +R PE ++ YI F +
Sbjct: 178 EAYRLQQETVRVEYVVLGPSQFLKEQQAGAAEMQQYYESHPETFREPEKVKVRYIFFKFN 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE------------ADEAFQ 288
+ + +I+ ++++ Y + E Y P+ V QL + A++ Q
Sbjct: 238 DFDGQIKADREKIETYYYDHLEDYSRPQTIRVSQLFLEPPSKAGTAEQQRFRLLAEKLLQ 297
Query: 289 SLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
+ G+ F QL ++ LG + +++ KKG
Sbjct: 298 RARAGESFEQLQKKYSPEAEGRIQAGELGLVKRGQNIPE--WEAVAFHLKKGGIGMA-KT 354
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
GY + V++I T EV+ + R +A K+ R E L
Sbjct: 355 PRGYYLIKVNDILERKTPPLAEVQAQVEKSWRAEEA----KKLAHRQAEGLRAEMLNASF 410
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ I + + + P Q+ + P + L DG
Sbjct: 411 AEAAAARHIKVQETGWLTSKDAIPGLGQQPAFSQMAIGL----KPQEISKPLNLADG-VA 465
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
+Q+ + + L ++ V + + K + +A ++ K G++ +
Sbjct: 466 LLQVMDHQDSLLPPLAQIKDRVAEAVRLEKARLAAAEEAESILSRLQK-GESLAKVAAQK 524
Query: 525 GASLLTTNQINRMDN-ENKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKV 581
G L + R + + + FS G +Y++ +
Sbjct: 525 GVPLKDSGFFTRSQGMPGQGQVRELATAAFSLAATPPHHVDLVSWGGENYLLVFKERRQP 584
Query: 582 GPVQ---EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
Q +++ L + + + +A + + + V++
Sbjct: 585 SREQFALAREELSKGLMDLKRQMVFSQWLASERQRAKIKVYE 626
>gi|113461230|ref|YP_719299.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus somnus 129PT]
gi|112823273|gb|ABI25362.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus somnus 129PT]
Length = 618
Score = 213 bits (542), Expect = 6e-53, Method: Composition-based stats.
Identities = 110/634 (17%), Positives = 241/634 (38%), Gaps = 31/634 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E + AS V+KI ++ V F++ G++ +F + ++V V +++ F+ +
Sbjct: 3 MEKLNNASSGIVSKIIFGLIGVSFVLSGVAGYMF-IRTDTSVAKVNGEEISQQVFLQQYN 61
Query: 62 QELGMISQKIGFVVNS-ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E +S+ +G + + L ++LD L++ L Q+ +++ L +V I
Sbjct: 62 NEYQRLSENLGAKFAEVADSAAKHLRHEVLDRLINQELLRQYAQELKLGISDKQVSLAIV 121
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F + KF + ++ LA GI+ Y + + L + + L+
Sbjct: 122 NSPMFQNEG-KFDNKIYQQILASSGISSDTYAAYVREGLVLEQLQQGIANSDFQVPIQLN 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + +F+ R V VL+ + + Q+++ K N+ PE ++ Y+
Sbjct: 181 ELAKNFFQRRDVRLAVLSLDDEMQKQTVTEQEIEQYYQANKANFAVPERVKVQYLDLTRA 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
++K++IS+ E+ Y+ NK +Y + + + P ++EA + +L+ G+ F LA
Sbjct: 241 IADQKVKISDIEIAQYYQDNKAQYITKH---LAHIQLPTEQEAQSVYANLQNGEDFAALA 297
Query: 301 EEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+ L +P +S +L G+++ + Y I V ++
Sbjct: 298 KLYSMDTLSAPKGGDLDWVVNGMMPLA--FESAVTLLNVGEYSQPVKVDNAYHIIKVLDM 355
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
T +V+++IA ++R + K++ E E + K+ +D+
Sbjct: 356 ---KTRELNDVREEIATKLRNDLVTNAFYSLEKQMNEKAFENPQSLEEA--AKVAGLDIK 410
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D+ + E+ + + + D + +++ + P
Sbjct: 411 ETDYFSRQDLPPELNYSHIATAIFNS--DLMQGGINSEAINVGDQHSVLLRVVDYKPEGI 468
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R L E D++ K K + + A ++V E D
Sbjct: 469 RTLAEATADIETYLKRQKAETTLFNMAEKIVAEM----NTITDFKLPSYIHFSEKETWVY 524
Query: 537 MDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGP--VQEKDKF 590
D +NK +FS V ++ N + ++K F
Sbjct: 525 RDADNK--DPVLGKVIFSMKKPDPGKTTISVAKNMFGDIVFVELMNVEDSQLTPEQKQLF 582
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++ L + +I L+ + S+ ++ I
Sbjct: 583 GVQIAEIKQFSLSNLLIQALREKASIEINTKFIN 616
>gi|254360504|ref|ZP_04976653.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
gi|153091044|gb|EDN73049.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
Length = 623
Score = 213 bits (541), Expect = 6e-53, Method: Composition-based stats.
Identities = 98/636 (15%), Positives = 228/636 (35%), Gaps = 28/636 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + + V KI ++ + F+I G+ L S ++V V +++ F N+
Sbjct: 1 MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQ--DNSVAKVNGEEISQQLFNNTL 58
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+E ++ ++G + + ++ +L+ L+ L Q+ +++ L ++
Sbjct: 59 NREQNRLNAELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQYAKELKLGISADQIKS 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI S +F +D KFS++++ L ++ Y + + ++ + +
Sbjct: 119 EIVNSQMFQ-QDGKFSNELYQQTLRHNNLSADGYAAIVQEGMLQSQLQEGIINSDFNVPA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R V + S L ++E K APE + Y+
Sbjct: 178 QQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYEANKTKLLAPEKLAVEYVTL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ E K+EI+N+++Q Y++NK Y + + + ++ EA Q+LK G+ F
Sbjct: 238 SPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQALKNGEDFA 297
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+ + + LG P + + G + + Y I V
Sbjct: 298 TLAKNKSSDTLSANNGGDLGWAKAGTFPKA--FEDAVANLTAGQMSAAVKVDNAYHIIKV 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412
KP + +VK IA +R + + + +S++E+++ +
Sbjct: 356 LERKPEQVIELAQVKDKIAQTIRQELVLTEYFTVAREMANKAFENNSSLEEVAKAGNVEL 415
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
L + + + + + ++V++ +
Sbjct: 416 QKTDLFTRENVPTALQNEKVLKVLFEG--ELRQNKQNSDALDVGNDANPQTLFVRVSDYD 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
R + +E V+ K K + + +K + V ++ K++
Sbjct: 474 AERPQTFDEAKAAVENFVKAEKAEKALLAKVEENVKALNEG--------KSVDVKFNAPQ 525
Query: 533 QINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
+ M E + +F+ + V+ + N G ++
Sbjct: 526 TLVYMQAEVE--NPVLAGTIFAMKKAQDKTTYQMARNQKGDVVIVALDNITEGNAEQFKT 583
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
Q L + + L+++ S+ V+++ +Q+
Sbjct: 584 LAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQ 619
>gi|149910316|ref|ZP_01898960.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
[Moritella sp. PE36]
gi|149806676|gb|EDM66643.1| peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
[Moritella sp. PE36]
Length = 636
Score = 213 bits (541), Expect = 7e-53, Method: Composition-based stats.
Identities = 102/637 (16%), Positives = 225/637 (35%), Gaps = 29/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE R+ S+ AKI L + V F + G+S L S + +V + + N
Sbjct: 1 MLEKFREGSQGPGAKIILGAVIVTFALAGVSSYLGGGSNQ-SAATVNGVDISTQALENQV 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + + G + + ++ L+ L++ L Q D+ L ++ G
Sbjct: 60 RTDRSRLESQQGESFAVRWEQPEFQNQVRQQSLNTLIAQNLLQQMTNDLALSIGDEKIRG 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I F D F+ + ++S L + G+ ++++ ++ + V
Sbjct: 120 YIFAMQEFQT-DGVFNDERYISLLRQNGMTPAQFVERLRVDFAQQQLTDALVNSEFSLPN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ Q + R + +++ A ++A + ++E K ++ P+ + YIL
Sbjct: 179 EVKQLAALQNQQRELSQLIVPANKFAADIVVTDAEVNSYYEDSKAFFQTPQQASVDYILV 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ-------SL 290
D+ IE+ D + Y ++ Y + R V ++ + A + +
Sbjct: 239 DMKNISAGIELDADAAENYYNEHLSSYTQEDKRKVAHILVAFNDDESAAQEKAQDLLTQI 298
Query: 291 KKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ G F +LA ++ + L K+ + + T ++ F
Sbjct: 299 QSGADFAELAKTSSDDTFSGENGGELDWLEKDIMDPAFETAAFALQNDGDVTTELVRSDF 358
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ I + ++ +F +VK I +++ +A E + L E +++
Sbjct: 359 GFHIIKLLAVESGKVKAFTDVKTTIETRLKNEQAVSHFDELAETLAEQAFEVPDSLDVAS 418
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
E + + + + + L + F + + + D + V
Sbjct: 419 EE--TGLTIVSTELFSANAIPAPLNDPRVAATLFDQDFIAEAL--NSEIINISDEQSIVV 474
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+I E P + L EV ++ K ++ S + + G++ ++ A
Sbjct: 475 RINEYKPQTTKALAEVNDEIVARLTATKAEQKALSFMTSVSAKI-NAGESVVAELASMDA 533
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG 582
S ++R D F +S++FS P + I + K ++ +
Sbjct: 534 SFTAPEWLSRFDYSKADF--KVLSKLFSMPKPAAEQASIATETSLNGDVTLLKFSSVRDA 591
Query: 583 P--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+E + L M + D +I L V+
Sbjct: 592 KINAEEAARLADTLKNMNAQADYDMLIQTLIKAADVS 628
>gi|113867510|ref|YP_725999.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
gi|113526286|emb|CAJ92631.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
Length = 644
Score = 213 bits (541), Expect = 8e-53, Method: Composition-based stats.
Identities = 102/644 (15%), Positives = 208/644 (32%), Gaps = 41/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R R + + ++V F+ +G+ + S V + + N
Sbjct: 1 MLDFVRNNRRLMLLLLLVLVF-PSFVFFGVESYSRFMDSSHDAAKVDGRAISVQEIDNVV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q +G + + K +LD L+ + + L ++ EI+
Sbjct: 60 RDQSERARQVLGASYDPRQFEGPDARKAVLDQLILQRVMASAVAREHLTVSDAKLLEEIS 119
Query: 121 RSPLF----HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
P KD K ++ L +G+ +++ L+ +
Sbjct: 120 NLPAIAQLPRTKDGKVDDKAYLQLLQSQGMTPEQFDARMRFELATQQLGASVAATAFVPK 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
LLD+ + R V ++ A P A L +++ ++ + PE ++ Y+L
Sbjct: 180 SLLDRLIAVRDQQRDVQALLFKPAGYTAKVQPDAAALKAYYDSHQQAFSVPEQAKVEYLL 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--------- 287
++ +EL++ Y+ N ++ E R ++ K+A A
Sbjct: 240 LSGEALAATQAVTPEELKSYYDSNIARFRIDEQRRASHILISAPKDAPAAQRQAAKDKAT 299
Query: 288 ----QSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
K F +A + + LG + + + K G +
Sbjct: 300 KLLEDLRKHPDTFADVARKNSQDPGSAEKGGDLGFMGRGALVKP--FEDAMYALKDGQVS 357
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALG 398
V+ +GY I ++ IKP+ T + V+ ++ ++R A +K E
Sbjct: 358 DVVETDYGYHIIKLTGIKPAETKPLEAVRTELEAELRKQFADKKFAEQADAFGNTVYEQA 417
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
S+ + + K+ V G + K V +
Sbjct: 418 DSLKPAADKFKLTIQTADNVTRQPNPALGAQSPLNNDKLLKALFSDDAIKNKRNTEAVQV 477
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ + +I E PA RK EEV V++ + + AE + K
Sbjct: 478 APNTLVAARIVEYRPAAVRKFEEVEAKVREGYIAQQAAELARKDGEARLAALKKA----- 532
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576
D GA ++R E + V + + Y V+++
Sbjct: 533 DSADGFGA----VQTVSRAKAE--GMPPKAVEAVLRADANKLPAVVGVDLGAEGYAVYRI 586
Query: 577 TNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
T ++ L+Q+ + L + LK++ V
Sbjct: 587 TKVSQPTQANPAQRQAEAQQLSQLAGQTDLQAFYESLKARSKVK 630
>gi|73541077|ref|YP_295597.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
JMP134]
gi|72118490|gb|AAZ60753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
JMP134]
Length = 649
Score = 213 bits (540), Expect = 8e-53, Method: Composition-based stats.
Identities = 105/645 (16%), Positives = 217/645 (33%), Gaps = 41/645 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R R + + ++V F+ +G+ + S V V + + N
Sbjct: 1 MLDFVRNNRRLMLLLLLVLVF-PSFVFFGVESYSRFMDSSHDVAKVDGRAITVQEVDNVV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ + Q +G + + L K + D L+ + + L + R++ I
Sbjct: 60 REQSERMRQMLGASYDPRQFEGPMLRKNVTDQLILQRVVANEVAREHLTVSNARLYEAIN 119
Query: 121 RSPLF----HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
P +D +V LA +G+ +++ L+ + G
Sbjct: 120 SIPAIAQLPRKQDGSVDDKAYVQLLAAQGMTPEQFDARMRFDLATQQLGTSIAGTAFVPK 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
LLD+ + R V ++ + P A L ++E ++ + PE ++ Y++
Sbjct: 180 SLLDRLIAVRDQQRDVQALLFKPADYASKVQPDAAALKAYYESHQSAFSVPEQAKVEYVV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--------- 287
+S +EL++ Y+ N ++ + E R ++ K+ A
Sbjct: 240 LSGDALAASQAVSPEELKSYYDSNIARFRTEEQRRASHILIAAPKDGPAAARQAAKDKAG 299
Query: 288 ----QSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
+ K F +A +Q + LG + + K G +
Sbjct: 300 KLLEELRKHPDTFADVARKQSQDPGSAEKGGDLGFMGHGALVKP--FEDAMYALKDGQIS 357
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG- 398
V+ +GY I ++ IKPS T V+ ++ ++R A++K ED +
Sbjct: 358 DVVETDYGYHIIKLTGIKPSETKPLDAVRPELEAELRKQFAAKKYAEDADAFGNMVYEQA 417
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
S+ + + K+ V G+ K V +
Sbjct: 418 DSLKPAADKFKLTIQTADNVTRQPNPALGQNNPLNNEKVLKALFSDDAIKNKRNTEAVQV 477
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ + +I + PA RK EEV V++ + + AE V K
Sbjct: 478 GPTTLVAARIVDYRPATVRKFEEVEAKVREGYIAQQAAELARKDGEARVEALKKS----- 532
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576
D + GA ++R E + + + + Y V+++
Sbjct: 533 DSAQGFGA----VTMVSRAKAE--GMEPKAVEAIMRADTSKLPAVVGVDLGANGYAVYRI 586
Query: 577 TNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
T ++ L+Q+ + L + LK++ V +
Sbjct: 587 TKISQPQQANEGQRQAEAQQLSQLAGQTELGAYYESLKARSKVKI 631
>gi|296135612|ref|YP_003642854.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
K12]
gi|295795734|gb|ADG30524.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
K12]
Length = 640
Score = 213 bits (540), Expect = 9e-53, Method: Composition-based stats.
Identities = 107/644 (16%), Positives = 221/644 (34%), Gaps = 42/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IRK S+ + + V++F F+++G+ + VG Q + +
Sbjct: 1 MLESIRKHSK-LMQIVLFVLIFPSFVLFGIQGYSSFEGSADAAAKVGGQTISMQQLDAAN 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E+ + +G V+ ++ + + LD ++ L LE +V I
Sbjct: 60 RDEIARLQSMLGSAVDIKQLDTPEQKLRTLDGMIRQTLLQLEARREHLEVTDAQVQQAIL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P D F + S +A +G+N ++ + L V+ G + S
Sbjct: 120 QIPQIAALRKPDGSFDVQAYRSLIAAQGMNTAQFEAQVREQLILQQVLSGLAGSVIDSQA 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L A + + R V + A + + +++ ++ PE I Y++
Sbjct: 180 LATAAAKAAAQQREVRLALFKPADYTAQVQVTPQEIETFYKNNTARFQKPESADIQYVVL 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
E I+++ ++ +A Y+ N K+ +P R ++ +A A Q K +
Sbjct: 240 SAAEVAAGIKVTAEQAKAFYDANLSKFSTPAERRASHILIAVPADATAAQQEQAKARAEA 299
Query: 298 -----------------QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ +++ G + LG F+ + + AD++F + K G+
Sbjct: 300 IAKQVKANPAEFAALARKDSQDPGSAEKGGDLGYFTADSMVKP-FADAVFGMQKIGEIVG 358
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-T 399
I FGY I ++ IKP F VK I Q++ A +++ D + +
Sbjct: 359 PIKTQFGYHIIELTGIKPGAQQPFDAVKASIEKQLQQEAAQKQMSADVEAFTNAVFEHPD 418
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVAL 458
S + + + V + V+ + K + +
Sbjct: 419 SFQAVEDKLHLKVQSASNVTRTPQPAAPDAVSPLSSKAFLDALFAESSLRNKHNLQAIQI 478
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ ++ PA+ L +V T ++ K AE Q
Sbjct: 479 APNVWASARVLSFSPAQTLPLAQVQTQARQKLVDQKAAELARKAGEQ------------- 525
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576
+ + IN + +S+ F + + Y V ++
Sbjct: 526 ALKSPATLTFGAPQMINLTQP-SPGVSPLIVSKAFGLSASKLPATAGVDLGAQGYAVLQL 584
Query: 577 TNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G P Q + Q + + ++++ I LK ++ V +
Sbjct: 585 DKVIEGEAPAQLISAAANAEQQALTQGVMNAYIEALKKRFGVEI 628
>gi|172060885|ref|YP_001808537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria MC40-6]
gi|171993402|gb|ACB64321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria MC40-6]
Length = 644
Score = 213 bits (540), Expect = 1e-52, Method: Composition-based stats.
Identities = 96/644 (14%), Positives = 224/644 (34%), Gaps = 39/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + L+ +G+ ++Y + L+ + V
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKG 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R V +VL A P++A LT +++ +K ++ PE I Y+++
Sbjct: 180 PAQRLSELAAQQREVQALVLKTSDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ ++ +++ Y+ N + S V + +A A ++ K K
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKTKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGDVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G+ I + +KPS F +VK IA Q++ A++ ++ + +
Sbjct: 360 VVQSDLGFHILKATEVKPSVVKPFADVKDQIAVQLKQQYAAKAFTDNAEGFTSTVYEKAK 419
Query: 401 M-DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + K+ ++ + P +F + + +
Sbjct: 420 TLQPAADKYKLTIQTATVMPTPNPQLPPTSPLNNPKFLAAVFASDSVKS-RNNTQAIDVG 478
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + + ++ + PA L+ + V++ + E + E K
Sbjct: 479 NNTLISARVTDYKPAAVPALDTIKDAVRQKVVAEQATELAKKDGAAKLAELQK------- 531
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
+++RM +++ +S V+ + + + + Y +++V
Sbjct: 532 --SKSADGFTPVQKVSRM--QSQGLTPAALSAVYKVDAKTLPAYVGVDLGADGYAIYRVN 587
Query: 578 NSKVGPVQEKDKFIS---YLTQMMNKDLLDSVIAYLKSQYSVTV 618
G + + + + Q+ + ++ +A L+ + V +
Sbjct: 588 AVIPGTAVDPQQLAAAQHQMAQVEAQSEGEAYLAALRDRSKVKL 631
>gi|88798823|ref|ZP_01114406.1| peptidyl-prolyl cis-trans isomerase D, putative [Reinekea sp.
MED297]
gi|88778586|gb|EAR09778.1| peptidyl-prolyl cis-trans isomerase D, putative [Reinekea sp.
MED297]
Length = 610
Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats.
Identities = 98/631 (15%), Positives = 234/631 (37%), Gaps = 32/631 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R ++R K+ + ++ + F ++G + S+ +V + + +
Sbjct: 1 MLDALRNSARGTAGKVIVGLIVITFTLFGAESIISIAGNSAP-ATVNGEDISEVEYQRLL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ ++ + G ++ S + +I+++L+S Q + + +A +V A
Sbjct: 60 SRRQQELTSQFGAEAAAQLMNSSFVTDEIIESLISQELQMQLADKLAFDASEDQVVQSFA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F D +FS D +++ LA G N + ++ + + +D
Sbjct: 120 DIPAFQ-IDGEFSQDRYLNVLAANGFNHQSFVAAQKEQAALAQFQSGVANSAFVVEKAID 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + RS Y +++ A + S+ L ++E+ ++ + + E ++ Y+ +
Sbjct: 179 RYANLIAQERSFQYKAFESQNYLAQVEVSDGELRDYYEQNQEQFLSEESVKVRYLTISLD 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ----SLKKGKKF 296
++ ++ E+Q+EY+ +R + ++F + + Q L +G++F
Sbjct: 239 SLAEQQSVTEQEIQSEYDSYVASLNEDNVREISHILFADGDDNQAEAQAALTRLNQGEEF 298
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA E G E IPD D+ L++ G + + +G + +
Sbjct: 299 ADLASELSDDPGSAEFGGSLGELIPDVYVDEFYDAALELSEVGQVSAPVETQYGVHLIRL 358
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ S EV+ ++ +R KA E++ +L + +++E++ + I
Sbjct: 359 DALNASDPEPLSEVRDELVADIRERKAQEELLLVESQLSDAAFSTDTIEEVAELFQTEVI 418
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ + D P + F +D L V L + S + +Q + P
Sbjct: 419 SSDWITRSAADTPFDN----PEALEQAFSAQVIEDGL-ISSVVRLENSSLLALQKEAYAP 473
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
E V+ +V+ K E + S+ ++ +G T +
Sbjct: 474 EDVESFEAVVEEVRTILTAEKAEELMHSEMASVIETQQIQGDG-----------WETADA 522
Query: 534 INRMDNENKFFGYDGISQVFSGPVE--MVKCFPIENGLSYVVFKVTNSK--VGPVQEKDK 589
I R ++E +S+ F P + V +T+ ++++
Sbjct: 523 ITRNNSE---LPSAVVSKAFELPQPIDGLVLGETSGDSVAYVVALTSVTNAAPDTEQREM 579
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ + + + +++ +TV
Sbjct: 580 ATALVENRIGGSQYQIIYNQARNKADITVRR 610
>gi|319898755|ref|YP_004158848.1| peptidyl-prolyl cis-trans isomerase D [Bartonella clarridgeiae 73]
gi|319402719|emb|CBI76266.1| peptidyl-prolyl cis-trans isomerase D [Bartonella clarridgeiae 73]
Length = 621
Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats.
Identities = 152/629 (24%), Positives = 300/629 (47%), Gaps = 16/629 (2%)
Query: 10 RTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+W AKIFL L + F++ WG+ ++ G+ + ++ + + ++
Sbjct: 2 NSWFAKIFLTALLLCFILLWGIPQ--LHTMNEKDFLTSGKSTITIDTYRLALADQSLRLA 59
Query: 69 --QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+G + + + + +L+ L D+ + + + I +F
Sbjct: 60 ITSHLGRMFTPDEIQRYKIPIFVLNQLQQDVLFDEQARKMKINLSKEAIARIIGNDNIFQ 119
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+D F+ D+F++ L + NE + ++YTK R ++ + GM+ ++ +
Sbjct: 120 -RDRVFNRDLFLNYLQQLRTNESNFFNYYTKKEKRNQLILASLSGMKAPDIFYKALATYQ 178
Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
E R DY+V++ + IADP+ +L +WF+ +K+ +RAPEY+ +S + K
Sbjct: 179 EEKRIADYLVIDLKKEEKIADPNQEILEKWFDTHKEKFRAPEYRTVSLFSMTSEKFLKPQ 238
Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
+IS +E+Q Y +N ++ +PE RT+E+L F +K AD A + + +G F L +E+ K+
Sbjct: 239 DISVNEIQTYYTQNASRFITPEKRTIEKLRFSTRKAADNAAKKIAEGLSFDALVKEEKKT 298
Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
LSDI+ G ++ +P S KKG + VI+ G VI V++I PS + ++
Sbjct: 299 LSDITKGPLAENELPS--HLASEIFELKKGQISAVINDLQGPVIIRVTHITPSTQIPLEK 356
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
V+KDI + A ++ Y +E G S+ E++++ ++ + +D GK +
Sbjct: 357 VEKDIRQILAQNNAITYIRNKYTEIENARFEGASLTELAKQHRLSLRKI-TIDKTGKTTE 415
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
G + +P K+ LL ++ + + KD ++LP+G Y+W Q+ IPAR R L EV +V
Sbjct: 416 GITLTDLPQKDVLLNAIYQSREDIDKD-PLSLPEGGYLWYQVDMIIPARYRTLSEVKQNV 474
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
WK + + KA ++ + +K GK+ + LG + TT + R D+ +K G
Sbjct: 475 IAQWKEEEIQRLLDEKAQGVLKQLAK-GKSLDSLATELGTTKQTTPALRRQDS-SKILGI 532
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFISYLTQMMNKDL 602
+G+ +F G + + + +V+K+T S + + + M+ +DL
Sbjct: 533 EGVKALFYGAKDHYGIVKGVDAKNRIVYKITASIIPKDITAHTLLPDIRTNIDMMIREDL 592
Query: 603 LDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
++ ++ + +++ + L +
Sbjct: 593 KLEMLQAANKEHPIEINNLNYSQILSTFQ 621
>gi|310815590|ref|YP_003963554.1| peptidyl-prolyl cis-trans isomerase D, putative [Ketogulonicigenium
vulgare Y25]
gi|308754325|gb|ADO42254.1| peptidyl-prolyl cis-trans isomerase D, putative [Ketogulonicigenium
vulgare Y25]
Length = 612
Score = 212 bits (538), Expect = 1e-52, Method: Composition-based stats.
Identities = 116/628 (18%), Positives = 249/628 (39%), Gaps = 31/628 (4%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + +++ +I G L V VG + V + + +Q L
Sbjct: 4 KKRTSPFVWAGFILIAGGLMITG---GLGLSGTVRNVGKVGDKTVTALEYQGAMQQGLQQ 60
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+ Q G + + + +G + + LV L+ IGL V +I + F
Sbjct: 61 MRQMFGNTLTFAQFQQMGGEAMAREQLVQERALENEASRIGLSVGDLYVARQIQQISAFQ 120
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
G FS + + + L + G+ E+++ D ++ + G + + + RF
Sbjct: 121 GLTGGFSLETYRAALRQVGLAERQFEDAQRDAIASGLLSSAIAGDLTMPAIYAETLARFR 180
Query: 187 FENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
E R + + + +V P+ L + + + D + PE +R++Y +
Sbjct: 181 GERRVITWAAVTAANVTTDIPAPTEEDLQAYHDSHPDVFTTPETRRVTYAALTPEMAAET 240
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQG 304
IE+S DE++A Y++ + Y PE R V++L F N +A A ++ G+ F LA E G
Sbjct: 241 IEVSEDEIRALYDQRIDSYIVPERRIVDRLTFNNDADATAALARIQSGEITFTDLANEMG 300
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
SL +I G ++ + + + A GD + FG V+ V+ + +
Sbjct: 301 FSLEEIDQGEMTEAALGE---GGAAVFAAATGDTVGPVPSRFGPVLYRVNVDLAAEETPY 357
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
V+ + N++ ++A + ++ L + +A G +++I + + +D+ +
Sbjct: 358 DAVRDTLRNELAASRAGRVIAQEKASLTDLVAGGAQIEDIV---NLSDLRSGTLDWQEGN 414
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+G + + + V LPDG +++ E +P R + L+E+
Sbjct: 415 TEGM------AAYEPFRAAIAAAEIGAFPAIVDLPDGGIFVLRLDEIVPPRVQTLDEMRA 468
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
+ W+ T + V+++A +L E + G F ++ G + T + R D
Sbjct: 469 YAEVMWRFQATQDAVATEAARL-AEAVEGGATFEEL----GLTATTEPALTRSDVVAGT- 522
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV------QEKDKFISYLTQMM 598
Y ++ F+ V + + V+ ++ + ++D L +
Sbjct: 523 PYGTMTTAFTLDSGDVTTLS--DQGTVVILRLDSIATADESNATYTADRDALAQTLNNSL 580
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
D++ + +++ SV+ ++ +
Sbjct: 581 AGDVMQAYGGAVRATTSVSFNETAVSSI 608
>gi|261496293|ref|ZP_05992697.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261308055|gb|EEY09354.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
OVINE]
Length = 623
Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats.
Identities = 98/636 (15%), Positives = 228/636 (35%), Gaps = 28/636 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + + V KI ++ + F+I G+ L S ++V V +++ F N+
Sbjct: 1 MIEKMHERTNGPVFKIIFALVSISFVIGGIGTGLISQ--DNSVAKVNGEEISQQLFNNTL 58
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+E ++ ++G + + ++ +L+ L+ L Q+ +++ L ++
Sbjct: 59 NREQNRLNVELGSRFWDLMDSPEYAAQFNQSVLNGLIDEELLRQYAKELKLGISADQIKS 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI S +F +D KFS++++ L ++ Y + + ++ + +
Sbjct: 119 EIVNSQMFQ-QDGKFSNELYQQTLRHNNLSADGYAAIVQEGMLQSQLQEGIINSDFNVPA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R V + S L ++E K APE + Y+
Sbjct: 178 QQALLAKLLLQQREVRLAEFSVAKEMENQTASEQELRAYYEANKTKLLAPEKLAVEYVTL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ E K+EI+N+++Q Y++NK Y + + + ++ EA Q+LK G+ F
Sbjct: 238 SPKDVESKVEITNEQIQTYYDRNKADYVTKGEAHLAHIQVASEAEAQAIEQALKNGEDFA 297
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+ + + LG P + + G + + Y I V
Sbjct: 298 TLAKNKSSDTLSANNGGDLGWAKAGTFPKA--FEDAVANLTAGQMSAAVKVDNAYHIIKV 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412
KP + +VK IA +R + + + +S++E+++ +
Sbjct: 356 LERKPEQVIELAQVKDKIAQTIRQELVLTEYSTVAREMANKAFENNSSLEEVAKAGNVEL 415
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
L + + + + + ++V++ +
Sbjct: 416 QKTDLFTRENVPTALQNEKVLKVLFEG--ELRQNKQNSDALDVGNDANPQTLFVRVSDYD 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
R + +E V+ K K + + +K + V ++ K++
Sbjct: 474 AERPQTFDEAKAAVENFVKAEKAEKALLAKVEENVKALNEG--------KSVDVKFNAPQ 525
Query: 533 QINRMDNENKFFGYDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
+ M E + +F+ + V+ + N G ++
Sbjct: 526 TLVYMQAEVE--NPVLAGTIFAMKKAQDKTTYQMARNQKGDVVIVALDNITEGNAEQFKT 583
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
Q L + + L+++ S+ V+++ +Q+
Sbjct: 584 LAPQFEQANRLILRNEFLQSLRAKASIEVNEDFMQQ 619
>gi|219871319|ref|YP_002475694.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis SH0165]
gi|219691523|gb|ACL32746.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus parasuis SH0165]
Length = 624
Score = 212 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 96/637 (15%), Positives = 212/637 (33%), Gaps = 28/637 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + S WV KI ++ + F++ ++ ++V V +++ F +
Sbjct: 1 MIEKMHEKSGGWVFKIIFALVSLSFVL--GGIGGGLIATDNSVAKVNGEEISQQVFSRAK 58
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
Q+ +++ ++G + + IL+ LV L Q+ + + ++ ++
Sbjct: 59 NQQQNILNAQLGERFWDLMDNPIYVKQFHESILNGLVDDELLRQYAKSLKIDVSADQIKS 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI SP F +D KF+++++ L G+ Y + + + V
Sbjct: 119 EIVNSPAFQ-QDGKFNNNLYQQALRNNGLTADGYAAIVYEGMLFAQIQEAIVNSSFTVPA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V + S + ++E K N+ PE + YI
Sbjct: 178 QQELLAKLLLQKRQVRLATYSIAKEVNNQTASAEEMQAYYEANKANFVNPEKLTVEYISI 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + KI+++N+++ Y+ NK KY + + + + EA+E Q+L KG+ F
Sbjct: 238 EPKDLANKIQVTNEQIDTYYQTNKAKYTTKGEAKIAHIQVATEAEANEIVQALAKGEDFA 297
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
QLA+ + + LG P + G + I + I V
Sbjct: 298 QLAKAKSQDKLSAAQGGDLGWAKAGVFPKAFEDAANM--LDAGKTSQPIKVDNAFHIIKV 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412
V ++VK I + +R + + + S++ +++ ++
Sbjct: 356 LERNVETVVPLEKVKAQITDTIRNELLLTEYSNITREMANVAFENSGSLEAVAKVANVLV 415
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + M+V++
Sbjct: 416 HKTDAFTRETVPAELDNEKVLRVLFD--SEVRQNGQNSEAIDLSDATNTKTMFVRVSHYQ 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ +E + V++ K K + + KA V +K G +
Sbjct: 474 AENVQTFDEAKSAVEQAVKQQKALKVLEEKATTQVAALNKGETVEVAFGASEELVF---- 529
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
+ + VFS VV + G E
Sbjct: 530 ------AQAQITEPALAQAVFSMAKPAEKPTYQTARNTNGDVVVIALDKVSDGTADEFKP 583
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ Q L + ++ L+ + + V+ + + +
Sbjct: 584 LQAQFNQAERVVLRNDLLKDLRERAKIEVNQDFLDQL 620
>gi|134094954|ref|YP_001100029.1| putative peptidyl-prolyl cis-trans isomerase protein [Herminiimonas
arsenicoxydans]
gi|133738857|emb|CAL61904.1| putative peptidyl-prolyl cis-trans isomerase D, ppiD-like
[Herminiimonas arsenicoxydans]
Length = 636
Score = 212 bits (537), Expect = 2e-52, Method: Composition-based stats.
Identities = 98/640 (15%), Positives = 216/640 (33%), Gaps = 37/640 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IR R + + L+++ F GL S+TV V Q + + +
Sbjct: 1 MFEFIRTHRR-LMQFLLLLIILPSFAFVGLESYTSMGDASNTVAKVADQTITQPEWDAAQ 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ Q G +++ + ++IL+NL++ L + L + I
Sbjct: 60 REQMSRFRQMFGDQFDAKMFDTPEAKQEILNNLIAQRVLTAEAKRNKLAVTDQALQQTIV 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
D KF + + + LA +G+ Y + L+ V + L
Sbjct: 120 NMGGLTTADGKFDVERYKAILAAQGMTPTMYEARLRQELTSQQVNAAIQNTAFAPDSLAK 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R V + ++ +L ++ + + + PE + Y++
Sbjct: 180 RLSELGEQEREVQQLAFKTSDYAGQVKVTDDMLKSYY-EKSNQFNVPEQVKAEYVVLTAD 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290
+I +S+ ++++ YE+N + Y E R ++ K+A +A ++
Sbjct: 239 ALAAQINVSDADIKSYYEQNAKHYGVEEQRRASHILIGVNKDASDAEKAAAKAKAEQLLA 298
Query: 291 ---KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
K ++F +LA+E LG F K + + K+G+ + ++
Sbjct: 299 TLHKNPQEFAKLAKENSSDTGSAERGGDLGFFGKGMMVKP--FEEAAFKLKQGELSDLVQ 356
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMD 402
+G+ I ++ IKP+ + EVK +IA+ +R ++K E S+
Sbjct: 357 SDYGFHIIKLTAIKPASIKTLDEVKNEIASDIRKQLVAKKYTETADVFSNTVYEQADSLK 416
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
++ + K+ + K V + +
Sbjct: 417 AVADKLKLKIETTGDLSRQPNPAVAPTAPYNNQKFLTALFSDESLKNKRNTEAVEVAPNT 476
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ ++ E PA R +EV V + + A + K
Sbjct: 477 LIAGRVTEYKPAAKRPFDEVKAMVHERVVQEEAAALAKKAGEAKLAALQ---------AK 527
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN---GLSYV-VFKVTN 578
+ + T ++R + + V + + + G + + +VT
Sbjct: 528 DDASGFSATQIVSRAKS--QGLNPAVFLAVMKADTSKLPAYVGVDLPQGFGVLRIVRVTQ 585
Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
++ +T + + + I LK + V +
Sbjct: 586 PANVDSAKRQAEHQQITAALAQQETFAYIEALKQKAKVKI 625
>gi|33152751|ref|NP_874104.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus ducreyi 35000HP]
gi|38605184|sp|Q7VKX4|PPID_HAEDU RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
D; AltName: Full=Rotamase D
gi|33148975|gb|AAP96493.1| peptidyl-prolyl cis-trans isomerase D [Haemophilus ducreyi 35000HP]
Length = 620
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 99/639 (15%), Positives = 229/639 (35%), Gaps = 33/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + + + K+ ++ + F++ G+ L ++ V V + +F +
Sbjct: 1 MIEKMHERTNSVAFKVIFALVSLSFVLTGIGTGLV--GADTSAVKVNGTTIDQHAFNTAK 58
Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ +++ ++G E A+ + +LD LV+ + Q+ +D+ L ++
Sbjct: 59 ARQQNVLNAQLGERFWDLLDTPEYAKQFN--QSVLDGLVNDELMRQYAKDLKLGISANQI 116
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
+I S +F +D KF+++++ L G+ Y + + + + V
Sbjct: 117 KSQIVNSQIFQ-QDGKFNNELYQHTLRNNGLTADGYAAIVNEGMLLSQIQKGIVESDFSV 175
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + + R V A S L ++++ K + PE + Y+
Sbjct: 176 PVTEALLAKLLLQQRQVRLATYPIAKEIANQTASVEELQKYYDAKKTDLVEPEQLVVEYV 235
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
F + EK I+++++++ YEKNK + + + + N+++A + ++LK+G
Sbjct: 236 TFMPKDIEKNIQVTDEQVATYYEKNKADFVTKGETHLAHIQLANEEKAKQVAEALKQGTD 295
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA + LG P + + + + + + Y I
Sbjct: 296 FAMLANDTSTDSLSAQQGGDLGWTKAGIFP--EIFEQTANALAINEVSEPVKVDNNYHII 353
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
V + K + F+ VK I +R + + +S+ E+++ +
Sbjct: 354 KVLDRKEDVALPFEMVKDKIVKIIRDELLLTEYSNISHEMANKAFENSSSLAEVAQIAGV 413
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ I R G++ P ++ ++++
Sbjct: 414 NVQTSTQFNREHIPADLNNEKVIKALFNGELRQSGQNSDALDVGNEREPKTMFV--RVRD 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
P R R +E D+++ K K + + +KA + V ++ +
Sbjct: 472 FYPERVRTFDEAKADIEQIVKHQKAEQLLLAKAEENVKALNEG--------NAVNVDFNE 523
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ + VF+ V+ + G +E
Sbjct: 524 AETLVYAKRAD---NPILFKTVFAMQKPTDKPTYQVTHNQQGDVVIVSLEKVIDGKQEEF 580
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
S L Q+ L + ++ L+S+ SV V+ N I++
Sbjct: 581 APLASQLKQLDQTLLRNDLLKDLRSRASVDVNQNFIEQL 619
>gi|170717232|ref|YP_001784350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
2336]
gi|168825361|gb|ACA30732.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
2336]
Length = 618
Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats.
Identities = 111/634 (17%), Positives = 247/634 (38%), Gaps = 31/634 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E + AS V+KI ++ V F++ G++ +F + ++V V +++ F+ +
Sbjct: 3 MEKLNNASSGIVSKIIFGLIGVSFVLSGVAGYMF-IRTDTSVAKVNGEEISQQVFLQQYN 61
Query: 62 QELGMISQKIGFVVNS-ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E +S+ +G + + L ++LD L++ L Q+ +++ L +V I
Sbjct: 62 NEYQRLSENLGAKFAEVADSAAKHLRHEVLDRLINQELLRQYAQELKLGISDKQVSLAIV 121
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F + KF + ++ LA GI+ Y + + L + + L+
Sbjct: 122 NSPMFQNEG-KFDNKIYQQILASSGISSDTYAAYVREGLVLEQLQQGIANSDFQVPIQLN 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + +F+ R V VL+ + + Q+++ K N+ PE ++ Y+
Sbjct: 181 ELAKNFFQRRDVRLAVLSLDDEMQKQTVTEQEIEQYYQANKANFAVPERVKVQYLDLTRA 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
++K++IS+ E+ Y+ NK +Y + + + P ++EA + +L+ G+ F LA
Sbjct: 241 IADQKVKISDIEIAQYYQDNKAQYITKH---LAHIQLPTEQEAQSVYANLQNGEDFSALA 297
Query: 301 EEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+ L +P +S +L G+++ + Y I V ++
Sbjct: 298 KLYSMDTLSAQKGGDLDWVVNGMMPLA--FESAVTLLNVGEYSQPVKVDNAYHIIKVLDM 355
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
T +VK++IA ++R + K++ E E + K+ +++
Sbjct: 356 ---KTRELNDVKEEIATKLRNDLVTNAFYSLEKQMNEKAFENPQSLEEA--AKVAGLEIK 410
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D+ + E+ + + + D + +++ + P
Sbjct: 411 ETDYFSRQDLPPELNYSHIATAIFNS--DLMQGGINSEAINVGDQHSVLLRVVDYKPEGI 468
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R L E D++ K K + + A ++V E + + + S T
Sbjct: 469 RTLAEATADIETYLKRQKAETTLFNMAEKIVAEMNT--MTDFKLPSYIHFSEKETWVYRD 526
Query: 537 MDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGP--VQEKDKF 590
+DN++ G +FS V ++ N + ++K F
Sbjct: 527 VDNKDPVLG----KVIFSMKKPDPGKTTISVAKNMFGDIVFVELMNVEDSQLTPEQKQLF 582
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++ L + +I L+ + S+ ++ I
Sbjct: 583 GVQIAKIKQFSLSNLLIQALREKASIEINTKFIN 616
>gi|329113481|ref|ZP_08242262.1| Peptidyl-prolyl cis-trans isomerase D [Acetobacter pomorum DM001]
gi|326697306|gb|EGE48966.1| Peptidyl-prolyl cis-trans isomerase D [Acetobacter pomorum DM001]
Length = 639
Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats.
Identities = 116/631 (18%), Positives = 243/631 (38%), Gaps = 15/631 (2%)
Query: 1 MLEIIRK-ASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFIN 58
M+ +R+ +W+ ++ +V+F+ F+ WG+ D + + V VG+Q+V
Sbjct: 1 MISYLRRVFVESWLGRVTAIVIFLAFVGWGIGDVMGYMGEETDVVAKVGQQQVSSDDLAT 60
Query: 59 SWKQELGMISQKIGFVVNS--ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ + EL I++++G S A + +IL L+ A L + + + V
Sbjct: 61 ALQSELPTIARQMGVSDPSHIPLAMQRQVAYQILHRLIGQAELLNTAQKLKVAVPDSAVR 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
E+ P F G + +F F +L G+ E+ ++D L+ ++ S+
Sbjct: 121 DEVFSLPYFKGANGQFDRASFNQKLHDRGLTEQRFLDMVRNDLTTRTILQPLAQAGSVSD 180
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+L + + + R VD++ + P P +AVL +++ + +R PE + ++
Sbjct: 181 TMLQRFLTYGAKTRVVDFVSIPFAAQPTPKTPDDAVLQRYYNNHPWMFRTPELRHAKIVV 240
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
I + +++ Y++ K +Y PE R ++ + +Q +A + K G +
Sbjct: 241 LSPQTVADSITMDEADIKRIYDEQKSRYNVPETRDIQLITLQDQAQATAIANAWKVGGNW 300
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+ + K + + + + IP +L ++F + G + + G+ + V+ I
Sbjct: 301 QAI-QNSAKDAAAVEMPNARPSTIPSTTLRQAVFHAPE-GQVSDPLKTEGGWAVFRVTKI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
T +++ KKDI +Q R A E ++L++ LA + + +
Sbjct: 359 TAPHTTPYEDAKKDILSQYRAAVAPSVAGERKRKLQDALAGQGLDAIPADLGAVAAAGTL 418
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D + + A + + P ++ V PD S V++ + PA
Sbjct: 419 DAQGMTADKEPAPLPASGKLREAIIHQIFTQKPGARATLVDGPDNSSFAVEVDTATPAAP 478
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R + TDV W+ + +A L + + K GA L +
Sbjct: 479 RTFAQAQTDVLAAWQDEARKHAANEQATTLY--LAAKNKQALGTVNASGAQLTRDAAFSF 536
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFIS 592
NK + + E+ ++V VT + P +
Sbjct: 537 AKP-NKNIPAALMDYLPRMQPGQ--AVMTEDDGHFLVAVVTKLFVPNPPAPADGVQRLKD 593
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
L Q + DL+ S + L + +++ +
Sbjct: 594 SLAQADSDDLVASYVEALSKRTPPHINERAV 624
>gi|95930881|ref|ZP_01313612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
acetoxidans DSM 684]
gi|95133123|gb|EAT14791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
acetoxidans DSM 684]
Length = 664
Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats.
Identities = 92/660 (13%), Positives = 225/660 (34%), Gaps = 44/660 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
ML++IRK +T V K+ V+ F+ +WG + V + F
Sbjct: 19 MLDLIRKKQKTTVVKVVFWVIIATFIGTIFLVWGKGRD--QQRDITVAAQVNGTDISFEQ 76
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
F ++ + G E + + L ++ ++ L+ A L + E + + +
Sbjct: 77 FRTTYSNMYNLYHNLYGQNFTPELEKQLQLTRQSINLLIDQALLLEEAERMHVSISDDEL 136
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
IA P F D F+ + ++S L+ + + + + + + +
Sbjct: 137 VKAIAEVPAFQV-DGVFNKEQYISVLSYQRMTPELFEQMQKQQMLVNLTQAQIRSEAVVT 195
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + R EN ++ Y+ D ++ LT ++E ++ +R + +S +
Sbjct: 196 DEDVADEYRRLNENVNLSYVAFKTGAFTDAVDVTDDALTAYYEANQEAFRVAQQVNLSLV 255
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK---- 291
+ ++ + ++Q Y+++ Y PE ++ P ++AD+A + +
Sbjct: 256 TLSPADYLDQVVLEEGDIQRYYDRHLATYAIPEQMAAAHILIPVAQDADDAQREKQRVLA 315
Query: 292 -------KGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ F +LA++ LG F + + D + ++ +K +P
Sbjct: 316 EQVLEKAQTGDFAKLAKQYSADTATAQKGGDLGLFQRGVM-DPAF-EAAAFALQKDALSP 373
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ FGY I + +V+ ++ +R+ +A + E ++
Sbjct: 374 IVETRFGYHIIKGGEHIEAGFTPLADVRDEVEKALRLDEARKLAYEKAMDAYNLNRKESN 433
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ ++ L + + + +
Sbjct: 434 FSAAAESLGATPVETGLFSQMQAIPTVGVSSELTERAFGAAA--------GEMLAPVNTT 485
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + E+I + +L V +V + +K + A + + + + G + I
Sbjct: 486 RGVVLATVTENIASHIPELSAVKAEVTEAYKRQQAVVLAEEAAQKALEKIQQ-GAKLKSI 544
Query: 521 GKNLGASLLTTNQINRM-DNENKFFG--YDGISQVFSGPVEM-VKCFPIENGLSYVVFKV 576
+ G + T NR G F+ ++ V G ++ + ++
Sbjct: 545 A-DNGRKVQETGLFNRALGEFVPTLGNVPGLAEAAFNLTIKEPVASQLYSAGENFYIVRL 603
Query: 577 TNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ +E + + +LL S + LK V + +++ +G +
Sbjct: 604 KQLQPADPNGLTEEESQRLQQTVLSRKQDELLRSKLDELKQTAEVIIAPAILRSMEEGNE 663
>gi|330817266|ref|YP_004360971.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia gladioli BSR3]
gi|327369659|gb|AEA61015.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia gladioli BSR3]
Length = 646
Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats.
Identities = 91/645 (14%), Positives = 223/645 (34%), Gaps = 40/645 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + + L+++ G+ S+ V SV K+ + F ++
Sbjct: 1 MLDFFRNHQR-LMMFLLLLIVLPGLGFVGVQGFRDFFDDSANVASVDGHKITRAEFDGAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G ++++ + +++LD ++ L + + L A V +
Sbjct: 60 RQQIDQARQALGANFDAKQFDTPERRQQLLDGIIEQRALTDEVRRLHLTASDNAVREALM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+P D + + LA +G+ +Y + LS++ + +
Sbjct: 120 SNPIIASLRKPDGSIDAERYTQLLAMQGMTPDQYQESVRYQLSQSQLPNNLINSAFTPRS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R + +VL A P++A L+ +++ +K + PE I Y++F
Sbjct: 180 VAQRLTDLAQQQREIQAMVLKPADYAAKVQPTDAQLSAYYDAHKQAFATPETASIQYLVF 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S+ +L YE N ++ + V + + A + ++ K K
Sbjct: 240 TPAAAAANAQPSDADLHKFYEDNTARFRTEAQVRVSHIFIAAARNASASDKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K G+ +
Sbjct: 300 LLAEVTAHPDQFAQIAEKNSQDAPSAAKGGDLGYVTRGSTAGGPAFDDAAFALKPGELSK 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ GY I +++KP+ F EVK IA +++ A++ ++ + +
Sbjct: 360 VVESDLGYHILKATDVKPAVVKPFDEVKDSIATELKQQFAAKAFSDNSEGFSSLVYEKAK 419
Query: 401 M-DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + K+ + + P +F + + +
Sbjct: 420 SLQPAADKYKLTIQTATVTPQPNPALPPDSPLNNPKFLAAVFAADSV-KNGNNTQAIDVG 478
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + + ++ PA L+ + V++ + ++A+ + K
Sbjct: 479 NSTLIAARVTADKPAAVPALDAIKDVVRQKYIADESAKLAKQDGAAKLAALQKSKSTDG- 537
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN---GLSYVVFKV 576
L +++R + I+ ++ + + + + Y +F+V
Sbjct: 538 --------FLPAEKVSRTQTL--GLSPEAIAAIYKADAKSLPAYVGVDLGANGGYAIFRV 587
Query: 577 TNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
Q+ L Q+ + ++ + L+ + V +
Sbjct: 588 NAIVPPAPVDPQQLTAAQQQLAQVYAQSESEAYMKALRDRSKVKI 632
>gi|258542318|ref|YP_003187751.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-01]
gi|256633396|dbj|BAH99371.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-01]
gi|256636455|dbj|BAI02424.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-03]
gi|256639508|dbj|BAI05470.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-07]
gi|256642564|dbj|BAI08519.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-22]
gi|256645619|dbj|BAI11567.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-26]
gi|256648672|dbj|BAI14613.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-32]
gi|256651725|dbj|BAI17659.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654716|dbj|BAI20643.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-12]
Length = 639
Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats.
Identities = 116/631 (18%), Positives = 244/631 (38%), Gaps = 15/631 (2%)
Query: 1 MLEIIRK-ASRTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFIN 58
M+ +R+ +W+ ++ +V+F+ F+ WG+ D + + V VG+Q+V
Sbjct: 1 MISYLRRVFVESWLGRVTAIVIFLAFVGWGIGDVMGYMGEETDVVAKVGQQQVSADDLAT 60
Query: 59 SWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ + EL I++++G S+ A + +IL L+ A L + + + V
Sbjct: 61 ALQSELPTIARQMGVTDPSQIPLAMQRQVAYQILHRLIGQAELLNTAQKLKVVVPDSAVR 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
E+ P F G + +F F +L G+ E+ ++D L+ ++ S+
Sbjct: 121 DEVFSLPYFKGANGQFDRASFNQKLRDRGLTEQRFLDMVRNDLTTRTILQPLAQAGSVSD 180
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+L + + + R VD++ + P P +AVL +++ + +R PE + ++
Sbjct: 181 TMLQRFLTYGAKTRVVDFVSIPFDAQPTPKAPDDAVLQRYYNNHPWMFRTPELRHAKIVV 240
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
I + +++ Y++ K +Y PE R ++ + +Q +A + K G +
Sbjct: 241 LSPQTVADSITLGEADIKRIYDEQKSRYDVPETRDIQLITLQDQAQATAIANAWKVGGNW 300
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+ + K + + + + IP +L +IF + G + + G+ + V+ I
Sbjct: 301 QAI-QNSAKDAAAVEMPNARPSTIPSATLRQAIFQAPE-GQVSGPLKTESGWAVFRVTKI 358
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
T +++ KKDI +Q R A E ++L++ LA + + +
Sbjct: 359 TAPHTTPYEDAKKDILSQYRAAVAPSVAGERKRKLQDALAGKGLDAIPADLGAVAAAGTL 418
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D + + A + + P ++ V PD S V++ + PA
Sbjct: 419 DAQGMTADKEPAPLPASGKLREAIIHQIFTQKPGARATLVDGPDNSSFAVEVDTATPAAP 478
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R E+ DV W+ + +A L + + K GA + +
Sbjct: 479 RTFEQAHADVLAAWQAEARKHAANEQATNLY--LATKNKQALATTNAPGAQMTRDAAFSY 536
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFIS 592
NK + + E+ ++V VT + P +
Sbjct: 537 AKP-NKNIPDALMDYLPRMQPGQ--AVMAEDDGHFLVAVVTKLFVPNPPAPADGVQRLKD 593
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
L Q + DL+ S + L + +++ +
Sbjct: 594 SLAQADSDDLVASYVEALSKRTPPHINERAV 624
>gi|58040710|ref|YP_192674.1| peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H]
gi|58003124|gb|AAW62018.1| Peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H]
Length = 645
Score = 211 bits (536), Expect = 3e-52, Method: Composition-based stats.
Identities = 113/639 (17%), Positives = 253/639 (39%), Gaps = 18/639 (2%)
Query: 1 MLEIIRK-ASRTWVAKIFLVVLFVPFLIWGLSD--ALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ +R +W + +++F+ F+ WG+ D + + S+ VV VG + + F
Sbjct: 1 MITTLRHLFVDSWAGRAAALLIFLAFIGWGVGDVYSNMGTASSNEVVRVGDRSITPDDFS 60
Query: 58 NSWKQELGMISQKIGFVVNSERAR--SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ +L ++++IG S+ + + ++ L NLV G+ V
Sbjct: 61 RALSAQLPEVARRIGLADPSKLPKGEVEQIARQTLQNLVIQNETQLAAARAGMMVPDDLV 120
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
E+ P FH +F VF RL R G++E + + + ++ ++ +
Sbjct: 121 RQEVFAIPAFHNAAGQFDRSVFNDRLTRIGLSEGKLLQAIREDIASRGLLQGMGQSVVAP 180
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ L D+ F R D + + A P++ L ++++ + +R EY+ +
Sbjct: 181 SSLTDRMLSFDASQRIFDLVQIPFASGVVAAAPTDDQLHRFYDNHPQMFRTTEYRHAKMV 240
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ K IE+ +D L Y+ + PE RT++ L F +Q +AD A + K G
Sbjct: 241 VMTSDSVAKTIEVPDDVLHRLYDFQARTFDMPETRTIQVLTFTDQAKADAAATAWKSGTS 300
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+ + ++ ++ + +SL S + IP+ LA + A + G+V+ +++
Sbjct: 301 WDDIQKKFPEA-AAVSLPSVRQSDIPNPELAKAA-FAAPSDRISGPEKTGMGWVVFNITA 358
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
I +F++ K + Q++ +A E ++ K+ ++ +A +++++I V
Sbjct: 359 ITAPHKTTFEQAKDGLKTQVQTQEAGEALQARQKQFQDAVAGSSTLEQIPSDLGAVPAS- 417
Query: 416 PLVDFAGKDVKGKEVAAIPYK--EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+D G G Q + ++ + P+G+ + + E P
Sbjct: 418 GTLDSNGLTQDGLPAPIPGDAALRQAIIHQIFTQSKGAQPTVINGPNGTAFSLLVDEVHP 477
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+ + V V + W + +A L G+ ++L
Sbjct: 478 GTLKPFDSVRDQVVQAWTADQKRHAADMRATALFNAAKAGTLRKAVEGQAEASALRQDVA 537
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
++R+ ++ + + VF F + ++ + VT K ++ +
Sbjct: 538 VSRVHP-DQSLPQNVLRGVFGLKPGTSGMFESPD--AFWLVNVTADKPASAEDMKSLGNQ 594
Query: 594 LT----QMMNKDLLDSVIAYLKSQYSVT-VHDNLIQRYL 627
L+ Q M D+ ++ A ++ + ++ L + +
Sbjct: 595 LSDEYLQSMRSDIPVALNAAMEKAVPPSHINMALYNQVV 633
>gi|326795821|ref|YP_004313641.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas
mediterranea MMB-1]
gi|326546585|gb|ADZ91805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas
mediterranea MMB-1]
Length = 613
Score = 211 bits (535), Expect = 3e-52, Method: Composition-based stats.
Identities = 87/636 (13%), Positives = 214/636 (33%), Gaps = 43/636 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S++ + KI + + V F ++G+ + S + S TV V +++ + + +
Sbjct: 1 MLQDIRDRSQSLIVKIIIGFIVVTFALFGVDALVTSFNSSETVAEVDGKEITRTQVLQTA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +G ++ L ++ LD+L+ A L + + L ++ +
Sbjct: 61 DTQRRQLISMMGNNIDPSLLDENLLQRRALDSLIELAVLKNQADGLELGVSDAQIDSLLV 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ + D F + +++ + G Y + + + + ++
Sbjct: 121 SAEQYQT-DGVFDQNKYLNAIRSLGFTPLAYKERIKESYVLSQLRSAVTESEFALPSQVN 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R+ +Y+ + D ++ L +++ ++ ++ +PE +ISY++
Sbjct: 180 AISELQNQKRTYEYVQFSLADQTEQTDVTDGELQAYYDDHQQDFVSPEQVKISYVVVTTD 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-------EAFQSLKKG 293
+++++ ELQ Y+ + E L+ + + D E L G
Sbjct: 240 ALATNVKVTDQELQNAYQTEIAGLDTEERDASHILIDTSIRSEDEAKSIIAEIQSKLASG 299
Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
F LA+E LG +K + + + A +G
Sbjct: 300 DSFASLAKEYSDDPGSKDVGGELGFVAKGALGESFESFEDALFAMNVGDIQEAETQYGLH 359
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ ++ I + + +E++ + + KA + + + + + + + ++
Sbjct: 360 LIKLNAIDKADAPTLEELRDQLTADITARKAKDALLDAQENIADLAYASDELAPLADEYG 419
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ D+ D+ G+ + + P F + L D + + +
Sbjct: 420 L---DVETSDYFGQSGGNDVITSEPTVISAAFS-DSVKQDGQNSDPIELGDDKIVVIHVD 475
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ E+ T++ K +S KA +L + + +
Sbjct: 476 DHKAESPLSFEDAKTEIASTLIKEKAESIISEKAAELFAD------------ASQDSGWE 523
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVVFKVTNSKVGPVQ 585
R + S VFS P + V K+ + G
Sbjct: 524 KVELAPRGQ-------DEVTSLVFSMPHPVEGTVQTAVKSLVNGDVVALKLLDVVAGESD 576
Query: 586 EK----DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
D + ++TQ + S + +K +
Sbjct: 577 SDSTRTDAYTRFVTQNQAQLNSASHLELVKDLAEIE 612
>gi|119503317|ref|ZP_01625401.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
HTCC2080]
gi|119460963|gb|EAW42054.1| peptidyl-prolyl cis-trans isomerase D [marine gamma proteobacterium
HTCC2080]
Length = 624
Score = 211 bits (535), Expect = 3e-52, Method: Composition-based stats.
Identities = 90/635 (14%), Positives = 208/635 (32%), Gaps = 33/635 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ IR ++ KI + ++ + F +GL +F SG+ +V V ++ +
Sbjct: 1 MMQSIRAGTQNTGFKILIFLIILSFAGFGLEQVIFGSSGT-SVAEVNGTEITPQELQVAI 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + Q G ++ E + + L+ L+ L Q + + A + +
Sbjct: 60 EGQKRQLMQIFGDNIDPEMLDDDRIRPRALEELIERTLLLQAATENAMVASSRAIGEIVG 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+F D F D + LA G + + T+ + + + + + L
Sbjct: 120 SIDVFKV-DGAFDADQYKVVLANAGYTPERFRREQTQQIILSQLQQGVLASDFVTTAELV 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
A E R V Y+++ + + + A+ S + Q +++ + + YIL
Sbjct: 179 AAAEATAEERDVRYLIVTDEALRSSAEVSADSVRQVYDRDPSLWTSDATVIADYILISRD 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL---------VFPNQKEADEAFQSLK 291
+ + LQ +++ +++Y E + + V + D+A +
Sbjct: 239 DFLA--PVDQVALQEQFDSIQDEYTVAEQTLIAHILLIQGDDESVEAYTRRVDDAASRIA 296
Query: 292 KGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
+ F LA E + +LG F+ + +S + G+ + + G
Sbjct: 297 ADEDFADLAAELSDDVGSAALGGELGFTDGTVF-PEAMESAVNSLAVGEVSAGVKTDAGT 355
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ T ++++K ++ M+ +A + + L E + +
Sbjct: 356 HFIRILERVAGETPDYEQLKNELEKSMQEAEADQTLLVTVDELRELSFNAADLQQPGGAL 415
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ V D E A + + + V L ++ V++
Sbjct: 416 SLSVSQSSPVSLTSGDGVFSERAV-----REVLFSDEVYLEGNNSAIVELSGNRFVVVRV 470
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
E A EV ++ D + + EG+ +I G
Sbjct: 471 AEKRAAEILPFSEVAKTIRADL-EQSAELAAKLALLESLRSRRNEGERLEEIATAEGYEW 529
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQ- 585
R+ + + ++ FS M + ++ + G ++
Sbjct: 530 RVELGARRVGS---LLPAEVVTLAFSMQYGMDAELESTQLVNGDLAIVELAGVEPGQLEN 586
Query: 586 ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
EK + L Q+ + + L+ +
Sbjct: 587 LSLGEKGAMSAQLIQLQGQLSMLEYRTALRDNAEI 621
>gi|78066690|ref|YP_369459.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
383]
gi|77967435|gb|ABB08815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
383]
Length = 644
Score = 211 bits (535), Expect = 3e-52, Method: Composition-based stats.
Identities = 99/655 (15%), Positives = 224/655 (34%), Gaps = 37/655 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + L+ +G+ ++Y + LS + V
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + + R V +VL A P++A L +++ +K ++ PE I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLAAYYDAHKQSFATPETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ ++ +++ Y+ N + + V + A A ++ K K
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKTAAKTKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+GD +
Sbjct: 300 LLADVKAHPDQFAQVAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGDVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G+ I + +KP+ F +VK IA +++ AS+ ++ + +
Sbjct: 360 VVQSDLGFHILKATEVKPAAVKPFADVKDQIAAELKQQYASKAFTDNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V K + + + +
Sbjct: 420 TLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNPKFLAAVFANDSVKSQNNTQAIDIGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + PA L+ + V++ + AE + E K K+
Sbjct: 480 NTLISARVTDYKPAAVPALDAIKDVVRQKVVAEQAAELAKKDGVAKLAELQKS-KSADGF 538
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
S + + +S V+ + + + + Y +++V
Sbjct: 539 AAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIYRVNA 588
Query: 579 SKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
G Q+ + Q+ + ++ +A L+ + V ++ + + DG+
Sbjct: 589 VIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKLYGSTAGQSQDGD 643
>gi|329889376|ref|ZP_08267719.1| rotamase family protein [Brevundimonas diminuta ATCC 11568]
gi|328844677|gb|EGF94241.1| rotamase family protein [Brevundimonas diminuta ATCC 11568]
Length = 643
Score = 211 bits (535), Expect = 4e-52, Method: Composition-based stats.
Identities = 110/635 (17%), Positives = 236/635 (37%), Gaps = 14/635 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+ R +++ A ++ + FLI G +F+ G ++S G + V + F +
Sbjct: 1 MITYFRNFAKSKWAAGLFALIILSFLIVGAQSDIFANLGPRHIISAGDRSVDSNQFRGDF 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + ++ G V+ + L ++ LD+ + G+ V EI
Sbjct: 61 ERVRANLQEQAGRPVSYDDMVKENLHQQYLDSQTQRLGFLDWAYKAGIRPGKELVLAEIR 120
Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ P F + +F D++ LA++ + + + V G++ +
Sbjct: 121 KIPAFFNQITGQFDKDLYAQALAQQNLTSEMLEQDLRDQYVTSHVGSAVFAGLQAPRVYA 180
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
E R + + P++A LT + ++ + R+PE++ IS +LF
Sbjct: 181 ALLAGQALETRDGRWFSVTQDMAGRAGAPTDAQLTAFMKENEARLRSPEFRMISLVLFTP 240
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ + ++ +++Q YE K PE RT L P ++ AD+ L+ GK ++
Sbjct: 241 GPNDPRPTVTEEQIQERYEFRKAALADPEKRTFVTLTVPTKEAADKIAADLRAGKAPAEV 300
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
A+ L D + + + + I G G+ +A ++ I+
Sbjct: 301 AKANNIQLGDYKA---TPQAAVGDPAVGAAVFGLAVDQVSAPIQGRLGFTVAKLAAIQAG 357
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
V+ + + + +++ ++ E+ G ++ + + K I LP
Sbjct: 358 QAVTLESARPALTQELQAEAVKAATYAKVEQFEKARQEGKNLADAATAAKARVIQLPPFT 417
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
G+ G+ + A + + + + + DG Y V++ + P+ L
Sbjct: 418 QQGQLPDGQPMNAPRQVLESAYTL----TKGGESDVIDAGDGQYFAVRLDDIRPSALPTL 473
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
+EV + + W + A +S+KA QL + G++ + GA L + +
Sbjct: 474 DEVRAPLGQQWTLRENARLLSAKAEQL-AGRVRAGEDIAKVAAEAGAPLTVRTGVQQSRE 532
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS----KVGPVQEKDKFISYLT 595
G + +F V ++ ++VV +V ++ LT
Sbjct: 533 SQAQVGDGVLRGLFGQSKGQVFS-DAQSQTAFVVGRVDAIHAANPALAAPLAEQARPRLT 591
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
+ + L D IA ++ L + L E
Sbjct: 592 EELANTLADRTIAAAAARTKSRNDPALALQALGVE 626
>gi|206560356|ref|YP_002231120.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia J2315]
gi|198036397|emb|CAR52293.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia J2315]
Length = 644
Score = 210 bits (533), Expect = 5e-52, Method: Composition-based stats.
Identities = 99/655 (15%), Positives = 222/655 (33%), Gaps = 37/655 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + L+ +G+ ++Y + L+ + V
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + + R V +VL A P++A LT +++ +K ++ PE I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + +++ Y+ N + + V + A A ++ K K
Sbjct: 240 SPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSLKQGDVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ G+ I + +KP+ F EVK IA ++ AS+ ++ + +
Sbjct: 360 IVQSDLGFHILKATEVKPAVVKPFAEVKDQIAIDLKQQYASKAFSDNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V K + + + +
Sbjct: 420 TLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNAKFLAAVFANDSVKNQNNTQAIDVGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + PA L+ + V++ + AE + E K K+
Sbjct: 480 NTLISARVTDYKPAAVPALDAIKDVVRQKVIAEQAAELAKKDGAAKLAELQKS-KSTDGF 538
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
S + + +S V+ + + + + Y +++V
Sbjct: 539 AAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIYRVNA 588
Query: 579 SKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
G Q+ + Q+ + ++ +A L+ + V ++ + DG+
Sbjct: 589 VIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKLYGTTASQQQDGD 643
>gi|126731274|ref|ZP_01747081.1| hypothetical protein SSE37_06394 [Sagittula stellata E-37]
gi|126708185|gb|EBA07244.1| hypothetical protein SSE37_06394 [Sagittula stellata E-37]
Length = 615
Score = 210 bits (533), Expect = 6e-52, Method: Composition-based stats.
Identities = 96/605 (15%), Positives = 239/605 (39%), Gaps = 32/605 (5%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
S++ VG ++P S + + +QE+ + + G ++ ++AR++G+ +L +V+
Sbjct: 33 GGSVSSIGKVGEAEIPASDYFRAMQQEIRAVQTQTGQALSMQQARAMGIPDMVLSRVVTT 92
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
A L+ +G+ R+ ++ P F G D F + + L G +E+E+ +
Sbjct: 93 AALENEAAQLGISVGDERLAQDLREIPAFQGIDGSFDRESYRLALQGAGFSEREFEEQLR 152
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV-LNNRHVPAIADPSNAVLTQ 215
+ T + G+ + + E R+ + + + + P++ L
Sbjct: 153 AESASTLLQNAIQAGVALPPVYAQTLVSYTGERRAFTWAELGSEQLSTGLPIPTDEELQT 212
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
++++ D Y P ++I+Y +E+ D L+A Y++ ++ PE R VE+L
Sbjct: 213 FYDENIDRYTRPTTRKITYAWLTPAMIVDTVEVPEDMLRATYDERSSEFNLPERRLVERL 272
Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
V+ +++ A +A + G F L E+G ++D +G ++ + +
Sbjct: 273 VYSSEEAAQDAAARVANGDVPFETLVRERGLDIADTDMGDVTEASLG------AAGETVF 326
Query: 335 KGDFTPVIHGSFG--YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
+ V+ + V+ + + SF+E + + + + +A ++ +L+
Sbjct: 327 AAEVGDVVQAPSDLGPALYRVNAVLAAQDTSFEEAIPQMRDTLALAQARRVIEGLANQLD 386
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ LA G ++++++ ++ + + + G + + +
Sbjct: 387 DELAAGATLEDLAGDTEMELGQIDWTSASSDGIAGY---------EAFNTAAAEAETGDY 437
Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
L DG +++ E A +V V++DW+ A ++ +A L +
Sbjct: 438 PAIAELGDGGLFALRLDEIQEAAPYPFADVRARVEQDWEADARATALADQAEALANQL-S 496
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
F D+ S + R N++ ++QVF+ ++ +
Sbjct: 497 GDTGFDDLNLR---SRTVAEGLTRNANDDN-VPPAVLAQVFTMSEGD--AAAVKGAGTAY 550
Query: 573 VFKVTNSKVGPVQE------KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
V ++ + ++ + F Q +++DL ++ ++++ V + +
Sbjct: 551 VVRLDDIIEVDPEDETVRQFRQLFAQQADQDVSQDLFRALAQDIQARAGVEIDQAAVNAV 610
Query: 627 LDGEK 631
L +
Sbjct: 611 LANFQ 615
>gi|118594828|ref|ZP_01552175.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
bacterium HTCC2181]
gi|118440606|gb|EAV47233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
bacterium HTCC2181]
Length = 627
Score = 210 bits (533), Expect = 6e-52, Method: Composition-based stats.
Identities = 94/645 (14%), Positives = 243/645 (37%), Gaps = 44/645 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++ + +AK+ L ++ +PF ++G+ L SV + + V + + N+
Sbjct: 1 MLDKIRNSTDSKLAKVILAIIIIPFALFGIDSYLSSVGSNVYIAKVNGVDISAQQYQNTE 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
Q + S K +LDNL+S ++Q I+ G + ++ I
Sbjct: 61 AMIR---EQMTDPNTDPALFDSPEFKKAVLDNLISTELMNQSIDKNGFVISNEQLSSYIV 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F ++ KFS + + + + K+ D ++ + N +
Sbjct: 118 GMPDFQ-ENGKFSQERYDQIVQYNNLTPKKLEDRIRTQMATQQAKDSINRLIYVPNEITQ 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
++ R + + P++ + Q++++ N+ P+ +I ++++ V
Sbjct: 177 PLVNLAYQKRDISLHEIRLDDYKKKIKPTDDEVKQFYDENTSNFIMPDRVKIEFLIYSVA 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL---------- 290
I +SN+E + ++ NK K+ + + R + ++F Q D ++
Sbjct: 237 GIVPTISVSNEEARQFFDANKGKFEANQQRRAKHILFAYQPGIDFEEKARIRDLAQTTLN 296
Query: 291 -------KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
K +L+++ + LG FS+ + AD++F L G + ++
Sbjct: 297 EIKKSPKIFENKVKELSQDTESAKQGGDLGFFSRGDMVKP-FADAVFGLKVDG-LSGLVE 354
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
FG I +++ VSF ++K I ++ KA ++ + + + + D+
Sbjct: 355 TEFGLHIIKLTD-IKGEQVSFDKIKTQIKGELLYGKALDQYATNAENFNNTVYENS--DD 411
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+S + +++ + D + + ++ + + + + +
Sbjct: 412 LSVVAQKFGLEVQQSQWLSLDDAKRFFNNDAFANEIFSS--ESIESKTNTLAIEVSPNNL 469
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ ++ + P+ + L ++ V K+ E + N LV + + K
Sbjct: 470 VSARVIDFSPSALQPLNDIKEQVVDLIIERKSQELIIEDGNMLVEDLKSKKK-------- 521
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKV 581
+ +++ + + + ++F + + + + V K+ N
Sbjct: 522 ---KVEWFDELVIDRIDKQGLSDQLVKKIFQIDTSELPAYSGFYDLKGEFFVIKINNVVD 578
Query: 582 GPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
V ++ D + + + + + I L++ + ++ ++
Sbjct: 579 EDVTDELSVDLYREEYEKALKGAIQAAYIDDLRADAKIKINPKVL 623
>gi|107028901|ref|YP_625996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia AU 1054]
gi|116689941|ref|YP_835564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia HI2424]
gi|105898065|gb|ABF81023.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia AU 1054]
gi|116648030|gb|ABK08671.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia HI2424]
Length = 645
Score = 210 bits (532), Expect = 7e-52, Method: Composition-based stats.
Identities = 99/643 (15%), Positives = 216/643 (33%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + L+ +G+ ++Y + LS + V
Sbjct: 120 SDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + R V +VL A P++A LT +++ +K ++ PE I Y+++
Sbjct: 180 LAQHLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + +++ Y+ N + + V + A A ++ K K
Sbjct: 240 SPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSLKQGDVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ G+ I + +KP+ F EVK IA ++ AS+ ++ + +
Sbjct: 360 IVQSDLGFHILKATEVKPAVVKPFAEVKDQIAVDLKQQYASKAFSDNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V K + + + +
Sbjct: 420 TLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNPKFLAAVFANDAVKNQNNTQAIDVGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ E PA L+ + V++ + AE + E K K+
Sbjct: 480 NTLISARVTEHKPAAVPALDAIKDVVRQKVIAEQAAELAKKDGAAKLAELQKS-KSTDGF 538
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
S + + +S V+ + + + + Y +++V
Sbjct: 539 AAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIYRVNA 588
Query: 579 SKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G Q+ + Q+ + ++ +A L+ + V +
Sbjct: 589 VIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKL 631
>gi|162147717|ref|YP_001602178.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786294|emb|CAP55876.1| Peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
diazotrophicus PAl 5]
Length = 643
Score = 210 bits (532), Expect = 7e-52, Method: Composition-based stats.
Identities = 114/638 (17%), Positives = 249/638 (39%), Gaps = 20/638 (3%)
Query: 1 MLEIIR-KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFI 57
M+ +R +W+ +I +LF+ F+ WG+ D L ++ V VG Q + SF+
Sbjct: 1 MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERADVVARVGDQTITTDSFL 60
Query: 58 NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ + EL +++++G S+ A +++L LV+ + + +G+ +
Sbjct: 61 SAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQSEMILAAGRLGVTVPDDVL 120
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
E+ +F G D +F +F SRL + G+ E +D L+ +V G R
Sbjct: 121 RDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIVRTDLAVRALVEPLQSGARAP 180
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+++ +A F + R++D + + P A L ++++ + +R PE++ +
Sbjct: 181 EVMVRRAFDFGAQARTIDLVRIALGDQGTP-APDTATLRRFYDNHPWLFRLPEFRHARIV 239
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ + I+I + EL+ Y+ + KY PE R+V+ + P+Q A + G
Sbjct: 240 VLSPDTVARSIDIPDAELRRLYDAQQSKYHVPETRSVQIVTAPSQARAQAIAAQWQAGAD 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+ ++ + K + + + + + IP L + A + G+V+ V+
Sbjct: 300 WAKI-QSGAKDSAAVGMDNVRESAIPSPGL-AKLVFAAPASVLQGPVQTDTGWVVFRVTQ 357
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ P F ++++ +QM T+A++ V ++L++ +A G +
Sbjct: 358 VTPPHDTDFATARQELRDQMAQTQAADLVGPRVQKLQDAIAGGGL--DRIPDNLGAVAIA 415
Query: 416 PLVDFAGKDVKGKEVAAIPYK--EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+D G+ G+ + + + V PD ++ V + P
Sbjct: 416 GTLDEQGRTQAGEPAPVPGSDALRRAIVARIFAQAKGANPTLVQGPDNAWFAVAVDSVEP 475
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+ R + V + W+ + +A L + + G +L
Sbjct: 476 GQLRPFDAVPDQGRGAWEDESRRHTANVQATALY--LAAKAHGGVAAAAGPGQQVLHPAP 533
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDK 589
+ R + + + VF + ++ + V +T + D+
Sbjct: 534 LGR-GQQIEGVPDELARLVFRLGAAG-QTVMLDEPDGFYVATLTAITHPDPATQPMQVDR 591
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ L+Q + D+ S A L+ + +Q L
Sbjct: 592 IRTGLSQAIANDIGLSYAATLQQAVKPKTNMGALQSAL 629
>gi|254252159|ref|ZP_04945477.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
AUO158]
gi|124894768|gb|EAY68648.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
AUO158]
Length = 645
Score = 210 bits (532), Expect = 8e-52, Method: Composition-based stats.
Identities = 95/655 (14%), Positives = 224/655 (34%), Gaps = 37/655 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDAAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + L+ +G+ ++Y + L+ + +
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIISSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + + R V +VL A P++A L +++ +K ++ P I Y+++
Sbjct: 180 LAQRLSELAAQQREVQSLVLKTSDYAAKVQPTDAQLAAYYDAHKQSFATPATATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ ++ +++ Y+ N + + V + A A ++ K K
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAASSASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+G+ +
Sbjct: 300 LLAEVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGEVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G+ I + +KP+ F EVK IA ++ A++ ++ + +
Sbjct: 360 VVESDLGFHILKATEVKPAVLKPFAEVKDQIAADLKQQYAAKAFSDNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNPKFLAAVFADDAVKNHNNTQAIDVGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + PA L+ + V++ + AE + E K
Sbjct: 480 NTLISARVVDYKPAAVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKSKSTDG-- 537
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
+I+R +++ +S V+ + + + + Y +++V
Sbjct: 538 -------FTAAQKISRT--QSQGLTPAALSAVYKVDPKTLPAYVGVDLGADGYAIYRVNA 588
Query: 579 SKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
G Q+ + Q+ + ++ +A L+ + V ++ + + DG+
Sbjct: 589 VIPGSAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKLYGSTASQPQDGD 643
>gi|212709201|ref|ZP_03317329.1| hypothetical protein PROVALCAL_00234 [Providencia alcalifaciens DSM
30120]
gi|212688113|gb|EEB47641.1| hypothetical protein PROVALCAL_00234 [Providencia alcalifaciens DSM
30120]
Length = 622
Score = 210 bits (532), Expect = 8e-52, Method: Composition-based stats.
Identities = 90/626 (14%), Positives = 227/626 (36%), Gaps = 16/626 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +R + + K+ L ++ + F++ G++ + S+ V Q + ++
Sbjct: 1 MMEDLRTKANSPFIKVLLAIIILSFVLTGVAGYVI-GGSSNNAAEVNGQPISKEQLQQAF 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+QE + + +G + S L + L+NL++ ++Q+ ++ L A ++
Sbjct: 60 QQERQSLQEYLGDKFSEVASNDNYMKELRTQALNNLINNQLINQYANELQLSASDQQIEQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +F + KF + + L+R IN + + L R + F G
Sbjct: 120 AIFAMQIFQ-TNGKFDSEKYREILSRYNINADNFAAQIRQDLVRAQLGKSFTGTEFALPS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R V L+ + A + L ++ ++++ +PE ++SY+
Sbjct: 179 EVKAYAELFMQEREVRTATLSLAALQAKQTVTEDELKAYYAANQNSFISPEQVQVSYV-E 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
K ++++E+++ YE+N + + E + + ++K+A LK G F
Sbjct: 238 MDAASMPKASVTDEEVKSYYEQNLKNFTKAEQKLYSMIQVASEKDAQALEAELKGGADFA 297
Query: 298 QLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA E+ S + G +L +KG + I YV+ + ++
Sbjct: 298 TLATEKSTDKFSAGNKGVIGWMEATSTPSEIISANLTEKGQVSAPIKVQDNYVLFRLDDV 357
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP F EVK I + K+ ++ + +++ E + ++ E I + +
Sbjct: 358 KPEAVKPFDEVKSSIETSLVQDKSVKQFYDLQQKVSEAATN--DNESLASVESISGLKVV 415
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKESIPA 474
+ + E+ ++ + + + +++ +
Sbjct: 416 TTGWFDRQNPPAELNFPKVVNEVFSERLVDKNGSTGINSDVINVEGDRAFVLRVAQYKAE 475
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
E V D++ K K + ++ + +L+ + K +
Sbjct: 476 SIEPFETVNADIEALVKRQKASAQLKADGEKLLAALQAGKG--DEALKAADTQFGAVQTV 533
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFIS 592
+ + G S + + ++ ++ + E ++ +
Sbjct: 534 SFLAPATDITGVAMKMTPPSEGKP-TYAIAYDQKDNLLIVQLDKVTLGQPTADELNQLAN 592
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTV 618
M+ + ++++ L++ + V
Sbjct: 593 EYRGAMSSAVNEALMLNLRTNAKIEV 618
>gi|40062782|gb|AAR37676.1| peptidyl-prolyl cis-trans isomerase, putative [uncultured marine
bacterium 439]
Length = 613
Score = 210 bits (532), Expect = 8e-52, Method: Composition-based stats.
Identities = 111/632 (17%), Positives = 236/632 (37%), Gaps = 28/632 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML IRK S+ WVA + + ++ VPF ++G+ + + S +S V SV + + +
Sbjct: 1 MLGAIRKKSKGWVAYLIVGLITVPFALFGIQEYM-GGSSNSAVASVDGEDISLDYYYQKL 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++G ++E L + ++D+L++ L+ F + L V I
Sbjct: 60 NTQQRNLQQQLGASYSAE--IDNALRQTLIDSLINEKLLENFTNSMKLVTLEEEVRSFIQ 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P+F D FS + ++ L G Y +K +S + S + +D
Sbjct: 118 SNPVFQV-DGVFSEERYIQLLRLNGFTPLAYELEQSKSMSLDQIKRNLNNSAFLSTVQID 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + R V ++VL+ ++++F+ K N+ ++ ++ +
Sbjct: 177 QLNDLSAQERDVSFLVLSTEKYKEQIIVDQDQISEYFDNNKSNFIEGHKVQVDFVELSLD 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
E++ N+ L+ Y +N+E Y + E R + ++ + A + +K+G F +LA
Sbjct: 237 NIEQQTNPDNETLRKLYVENEELYTNSEQRRAQHILLEEESNARAILKEIKEGGDFSELA 296
Query: 301 EEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
K LG F +E + D GD + V+ +GY I ++ I
Sbjct: 297 RIHSKDITTSEEGGDLGLFERELMVPE--FDKAVFDMDVGDISEVVKTDYGYHIIKLNEI 354
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+PS SF+EV+ + + +E L+E L+ + + I + ++L
Sbjct: 355 QPSTLQSFEEVEGQLLVLHK----KNVNQEALYELQEELSNLSYEESIDVVSSQLDLELQ 410
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
DF + + + + + L ++ + + P R
Sbjct: 411 TSDFFSEYSTEYDEVFVSTAFSDIVF-----KEGENSDVIELSKDRFIVMTLANQQPERQ 465
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK-NFRDIGKNLGASLLTTNQIN 535
+ L+EV + + + + + A + + + + I
Sbjct: 466 KVLDEVEDQIVDIVRNIGAKQLIDDLAQNISSSLTSGDDAQVKTLMVENDLEWNDVGWIT 525
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFP----IENGLSYVVFKVTNSKVGPVQEKDKFI 591
R ++ S+V+ + + +V + K+ + I
Sbjct: 526 RDSQ----LPFNATSKVYKLSKPNTGEHTYHSQSADANTTLVIDLKAVKLSDEVINSETI 581
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
N +L S++ L+ + V +L+
Sbjct: 582 DLYLSEENNELFLSLVKKLRDSAEIKVFSDLL 613
>gi|209542341|ref|YP_002274570.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530018|gb|ACI49955.1| peptidyl-prolyl cis-trans isomerase D [Gluconacetobacter
diazotrophicus PAl 5]
Length = 643
Score = 210 bits (532), Expect = 8e-52, Method: Composition-based stats.
Identities = 114/638 (17%), Positives = 249/638 (39%), Gaps = 20/638 (3%)
Query: 1 MLEIIR-KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFI 57
M+ +R +W+ +I +LF+ F+ WG+ D L ++ V VG Q + SF+
Sbjct: 1 MISFLRHAFVDSWLGRIIAGLLFLAFVGWGVGDVLSNIGSERADVVARVGDQTITTDSFL 60
Query: 58 NSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ + EL +++++G S+ A +++L LV+ + + +G+ +
Sbjct: 61 SAVQNELQQLARQMGVGDPSQIPAAARGQAAQQVLQRLVTQSEMILAAGRLGVTVPDDVL 120
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
E+ +F G D +F +F SRL + G+ E +D L+ +V G R
Sbjct: 121 RDEVFGLQIFKGPDGRFDRALFDSRLRQIGMTEARLLDIVRTDLAVRALVEPLQSGARAP 180
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+++ +A F + R++D + + P A L ++++ + +R PE++ +
Sbjct: 181 EVMVRRAFDFGAQARTIDLVRIALGDQGTP-APDTATLRRFYDNHPWLFRLPEFRHARIV 239
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ + I+I + EL+ Y+ + KY PE R+V+ + P+Q A + G
Sbjct: 240 VLSPDTVARSIDIPDAELRRLYDAQQSKYHVPETRSVQIVTAPSQARAQAIAAQWQAGAD 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+ ++ + K + + + + + IP L + A + G+V+ V+
Sbjct: 300 WAKI-QSGAKDSAAVGMDNVRESAIPSPGL-AKLVFAAPASVLQGPVQTDTGWVVFRVTQ 357
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ P F ++++ +QM T+A++ V ++L++ +A G +
Sbjct: 358 VTPPHDTDFATARQELRDQMAQTQAADLVGPRVQKLQDAIAGGGL--DRIPDNLGAVAIA 415
Query: 416 PLVDFAGKDVKGKEVAAIPYK--EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+D G+ G+ + + + V PD ++ V + P
Sbjct: 416 GTLDEQGRTQAGEPAPVPGSDALRRAIVARIFAQAKGANPTLVQGPDNAWFAVAVDSVEP 475
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+ R + V + W+ + +A L + + G +L
Sbjct: 476 GQLRPFDAVPDQGRSAWEDESRRHTANVQATALY--LAAKAHGGVAAAAGPGQQVLHPAP 533
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDK 589
+ R + + + VF + ++ + V +T + D+
Sbjct: 534 LGR-GQQIEGVPDELARLVFRLGAAG-QTVMLDEPDGFYVATLTAITHPDPATQPMQVDR 591
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ L+Q + D+ S A L+ + +Q L
Sbjct: 592 IRTGLSQAIANDIGLSYAATLQQAVKPKTNMGALQSAL 629
>gi|85708717|ref|ZP_01039783.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
gi|85690251|gb|EAQ30254.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
Length = 645
Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats.
Identities = 102/640 (15%), Positives = 227/640 (35%), Gaps = 17/640 (2%)
Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSDALFSVS--GSSTVVSVGRQKVPFS 54
M+ + R ++ + FLV++ + F +S + G V VG + + +
Sbjct: 1 MISLFRNFFQSKIGLPIFIGFLVLVALAFAASDISGSATFGGLTGDDKVAVVGGEPITSN 60
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ L + + + + GL+++ L+ L+ + QF ++ GL A
Sbjct: 61 EMSGAMNNALDRARDQNPTITMPQLVANDGLNRE-LELLIDRFAIGQFAQEYGLRAGENL 119
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
V EI + F +F + + L R+GI + L ++ +
Sbjct: 120 VNSEILQIGAFRNVTGEFDQATYQAALRRQGITDAILRKDIADGLLAQQLLRPAFAAPQL 179
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
Q E R ++ + DP++ L ++ + + N+ PE + I +
Sbjct: 180 PRAAARQYAALVLERRQGRIGLVPSSEYAPDGDPTDEQLNTFYSENRANFILPERRTIRF 239
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
F + E ++ ++ A YE + +Y + E R + V P + A + ++ G
Sbjct: 240 ARFGADSVQTVAEPTDAQIAARYEADAAQYAAQERRAISTFVVPTEAAAQALVERIRAGL 299
Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A++ G ++S L +GD G+ +A V
Sbjct: 300 SLEAAAQQAGFNVSSGELLDRESMSSSTSFALAEAVFAESEGDVITPQRSQLGWYVARVD 359
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+++ + S +V+ +IA Q+R + ++ + ++EE + GTS+ + + + +
Sbjct: 360 DVENTPARSLADVRGEIAAQIRREAVAAQLIDLSSQIEELVDTGTSLMDAATQFGLEVTA 419
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+P V G+ +L F D+ + ++ + + +
Sbjct: 420 VPGVLADGRIFGTPGQTLNQAVRPVLETAFQMDEG-EPQLAELVAGEQFLIFDVSDITES 478
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ EV +V W+ + AN+++ + + G + + SL +I
Sbjct: 479 AAPPIAEVREEVTAAWRRNEGNRIAQQAANRILED-VRSGTPLAEAMRAENPSLTQVERI 537
Query: 535 NRMDNENKFFGYDGISQV----FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ E + FS K EN L + + + V V +
Sbjct: 538 DLERRELLANPNQRVPTALILMFSMAQGSTKILEEENDLGWFLVDLDEIVVPEVANDNPI 597
Query: 591 ISY----LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ L Q + + A ++ + V ++ ++
Sbjct: 598 LDQTQNSLAQALAGEYNAQFAAAVREEVGVERNEEAVEAL 637
>gi|296535271|ref|ZP_06897478.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
gi|296264392|gb|EFH10810.1| conserved hypothetical protein [Roseomonas cervicalis ATCC 49957]
Length = 507
Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats.
Identities = 113/509 (22%), Positives = 215/509 (42%), Gaps = 5/509 (0%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML +R+ + TW AKI +L + F +WG+ D + ++V VGR + +
Sbjct: 1 MLTALRRLAGTWFAKILFALLVLSFAVWGIEDIVRQFGSDTSVARVGRDAIEVPEAQAAA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++E+G + +++G L ++ ++ LV Q +GL V +
Sbjct: 61 RREIGRVQRQLGGSFEITPEMGEALTRQAVEGLVMERVQRQEARHLGLAVPEAAVRDYVW 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F G D +F+ F S L ++E E++ L R +VG G + L
Sbjct: 121 GIPAFQGPDGRFNRIAFDSFLRNNQLSEGEFLTLLRADLERQQMVGAVRAGAAGPDALTR 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E R + + L P A P A L ++ E D + APEY+R++ +
Sbjct: 181 PLLAWEREQRLAEIVRLPFSAAPEPAAPEEAQLRRFHENNADRFSAPEYRRVTLAVLSPE 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF-IQL 299
++ + +EL+A YE +++ Y PE R+++Q + P++ +A+ + ++G F
Sbjct: 241 TVMGDVQATEEELRAAYEAHRDHYERPERRSLQQALLPDRAKAEALARQWREGADFAAIT 300
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ LG + +P LA++ F+L + G + + FG+ + HV+ I
Sbjct: 301 QAAEAAGGQATELGESDRAGLPLPELAEAAFTLPQGG-VSEPVQSPFGWHVVHVTAIAAG 359
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
F+ V+ ++ Q++ +A++ E ++E+ LA G S+ E++ R + +VD
Sbjct: 360 EDRGFEAVRPEVEAQVKRERAADLAYERANQVEDALAAGGSLAELAPRFGLGVAQA-VVD 418
Query: 420 FAGKDVKGKEV--AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
AG+ +G + + R + +++E IPA R
Sbjct: 419 AAGRTPEGAQAALPLSGQARDIALRAVFAAQQGQMPRLAEAGQTALFAFELQEVIPAALR 478
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
E V V+ + +A L
Sbjct: 479 PFETVEPQVRAAYLADARRRAQEERAAAL 507
>gi|126668935|ref|ZP_01739876.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
gi|126626598|gb|EAZ97254.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
Length = 624
Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats.
Identities = 98/613 (15%), Positives = 221/613 (36%), Gaps = 24/613 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R+ ++ +AKI + +L + +WG+ + SG V +V Q + F+
Sbjct: 1 MLQDMRENAQGTIAKIIIGLLILSLSVWGMDAIIGGFSGEPEVATVNGQDITEREFLRVV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E ++ + + +L L+ L Q + GL + I
Sbjct: 61 QLESQNRLSRMERP-DPSLLDEDQIRVDVLQALIEEQVLAQDADRQGLALSDADIDALIT 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F D +F+ D FV+ + G+ E+ D K + V ++ +
Sbjct: 120 QMPQFQV-DGQFNRDQFVTTVRNVGMGVGEFRDAMRKQTVVNQIRAGIVASGVVTSNSIT 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + + R + ++ V + S + +++ + ++ PE +SY++ ++
Sbjct: 179 RLMKIQNQTRDFRLLNISASAVADQVNVSAGDIQAFYDSNPNLFQQPEQVDVSYVVLSLN 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---DEAFQSLKKGKKFI 297
I IS++EL Y+ + E R LV + Q L G+ F
Sbjct: 239 ALADAIVISDEELLTYYQSREADLAREERRAAHILVEDTADADAVVERIQQRLADGEDFA 298
Query: 298 QLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+E G F+ + D + +++ + G + + SFG + ++
Sbjct: 299 ALAQELSIDTVSGEQGGDLGFAGRGVYDPAFDEAL-FSLEPGTVSDPVRTSFGVHLIKLN 357
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+I+ S + +V + + + +A E + L + +++ ++ +
Sbjct: 358 DIRRSDVPALADVAAQLRDDLSREQAREAYAQARTTLADSAYAADNLEGPAKDLNLELRQ 417
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ G G+ QL + + + D + +++ A
Sbjct: 418 ADKITRNG---GGEPFDHAGLVRQLFSE--DVLNGGYNTELIDVADNRAVVARVRVYREA 472
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
L+ V ++ + + KT ++++A+++ + + G++ +DI + A+
Sbjct: 473 EVLPLDGVEDAIRSNLEAEKTRTALAARASEMAAQL-QAGESLQDIADDSWATYSE---- 527
Query: 535 NRMDNENKFFGYDGISQVFSGP---VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
G + V++ P V G S VV + G V
Sbjct: 528 --QPRSAPELGGGVMQTVYALPRPRAGDVSYGHTITGNSAVVIALDKVNEGEVNTGSTEY 585
Query: 592 SYLTQMMNKDLLD 604
L + +
Sbjct: 586 VQLQEFLASLDGQ 598
>gi|51244848|ref|YP_064732.1| peptidyl-prolyl cis-trans isomerase D [Desulfotalea psychrophila
LSv54]
gi|50875885|emb|CAG35725.1| related to peptidyl-prolyl cis-trans isomerase D [Desulfotalea
psychrophila LSv54]
Length = 634
Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 112/643 (17%), Positives = 244/643 (37%), Gaps = 34/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+I R +++ +I +VV+ + F+ WG+ + + S + V +++ F ++
Sbjct: 5 MLQIFRNKAQSIFIQIIVVVIALVFIFWGVGANMM--NKSEAAIVVNGEEISLQQFQQAY 62
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
Q +S + G V A ++GL ++++ LV L Q + +G++ + I
Sbjct: 63 DQAFQQLSDQFGGKVPKGMADALGLKDQVVNRLVQQELLRQGGKQMGVQLSAVEIQHAIQ 122
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV-VGMFVGGMRPSNLLL 179
P FH KD F + S LA ++ ++ + + + S+ +
Sbjct: 123 AMPQFH-KDGAFDVKSYNSILAANRLSPSKFEANIRHDMLAEKTARAINEFSAHASDFEI 181
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
++ E SVD+ + + + L QWF++ KDNY+ +++Y+ +D
Sbjct: 182 EEFYGQANEGVSVDFASFSPKDFSSQVSVEEPALAQWFKEAKDNYKKSPEVKLTYLAYDY 241
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQKEADEAF 287
++KI + + Y+ + + E R + K+A+
Sbjct: 242 ATIQEKISLDEAAINNYYQSHLNTFRLAEKRHARHILFVVSPGDSDEKQQAQLKKAENVL 301
Query: 288 QSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
+ + + F QLA + LG F++ + AD++ K GD + ++
Sbjct: 302 KKAQADEDFAQLARQFSEGPSKSEGGDLGFFARAEMI-PPFADAV-FTLKNGDISGIVKT 359
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+FGY I + I+ + T S +V++ IA ++ +A + E +
Sbjct: 360 NFGYHIIKLEGIQEAKTKSLDKVREQIALSLQQDQAKALAFQLANNAYEGIIG------- 412
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + + P D ++ K+ LF + ++ D Y
Sbjct: 413 AGNLQAYTKKHPETPAITTDYFSQQNPPANLKDNKLFLEKAFALGKKELSSLLQTDSGYA 472
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
+ + + L +V +D++ E KA + + + + F + +
Sbjct: 473 VIYVDDINTPATPTLAKVRDRATEDYRNYLANELAKKKAEEFLKGLHEGKETFTTLAEQT 532
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGP 583
G T+ + R ++ F + Q+F P + + SY V+
Sbjct: 533 GVQTEKTDFLLRQG-DSGTFPQTLLEQIFLLSPQKTSPDTIGQADGSYYVYSYIGRNTPS 591
Query: 584 VQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
EK+++IS + + LL + + + + + + +L
Sbjct: 592 ASLTAPEKERYISGILNNKQQMLLSAWLIFQQKNAQIERNQSL 634
>gi|71901123|ref|ZP_00683230.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
Ann-1]
gi|71729128|gb|EAO31252.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
Ann-1]
Length = 655
Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats.
Identities = 104/670 (15%), Positives = 226/670 (33%), Gaps = 62/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK---------- 50
ML+ +R+ + W+A + +L +PFL + G V +
Sbjct: 1 MLQKLREKTSGWIATAIIGLLVIPFLFV-IDVRYIGGGGKDDVAQLQASPTWWKSAPAFW 59
Query: 51 ----------VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ F + + Q + G ++ ++ +K+LD L+ +
Sbjct: 60 PISLLWQRQGISKQEFQSRFDQARLQRRAQQGEGFDAREFETLSNKRKLLDQLIEEHVMR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN--EKEYIDHYTKM 158
E G+ V IA F K KF+ D + LA+E + Y ++ M
Sbjct: 120 LVAEGAGVVISDEAVRSIIANDQRFQVKG-KFNQDRYRLLLAQEPTMRTPQMYENYVRSM 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + + N L++ + R+ + + L + A+ S+ + +W+
Sbjct: 179 MQLSMIPSAIFDSGFVPNTELERILALLGQTRNAELVTLPALKLDT-AEISDVQIKEWYA 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
++D++R PE Y+ + S L+ Y+ + E R ++
Sbjct: 238 VHRDDFRQPETLSFEYVDL-DAAHLPRPTPSEAVLRKRYDAQQRGEAQNEQRKAAHILIT 296
Query: 279 NQKEADEAF-----------QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323
+A ++ K G F LA ++ G + LG + +
Sbjct: 297 VGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGMMVKP 356
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K G+ I FG + + IK + + F+ V+ +A + +
Sbjct: 357 --FEDALFAMKVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQLAAEQTKEDIDKA 414
Query: 384 VKEDYKRLEEFLALGTSMDEISRR-EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + L + + + L + +AA P +++LF
Sbjct: 415 FNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSR----RDAVGIAANPAVQRVLFS 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
D + + + +++ + L++V V + + ++ +S
Sbjct: 471 HDFIQGGKVSD-PIQINPNHSVVLRVIAHTTEQQLPLDKVREQVVAAVRADRADKDGASA 529
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A+ LV K G ++ K + + R F +FS +
Sbjct: 530 ADALVARLQK-GDTLEEVAKAEKLQITPLTGLQRTAQVPAF---AATRAIFSALSPVAGK 585
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ + Y VF VT G P ++K+ L Q+ + + + ++ +
Sbjct: 586 PTVGKVRLDNGRYAVFTVTQVIPGDLTKFPEEQKEMLRQQLDQIEGTLAVHAYVDMMRKR 645
Query: 614 YSVTVHDNLI 623
+ VT+ + +
Sbjct: 646 FKVTIDKSQL 655
>gi|254247971|ref|ZP_04941292.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
PC184]
gi|124872747|gb|EAY64463.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
PC184]
Length = 645
Score = 208 bits (527), Expect = 3e-51, Method: Composition-based stats.
Identities = 99/643 (15%), Positives = 217/643 (33%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + L+ +G+ ++Y + LS + V
Sbjct: 120 SDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + + R V +VL A P++A LT +++ +K ++ PE I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + +++ Y+ N + + V + A A ++ K K
Sbjct: 240 SPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSLKQGDVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ G+ I + +KP+ F EVK IA ++ AS+ ++ + +
Sbjct: 360 IVQSDLGFHILKATEVKPAVVKPFAEVKDQIAVDLKQQYASKAFSDNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V K + + + +
Sbjct: 420 TLQPAADKYKLTIQTATVTPTPNPQLAPTSPLNNPKFLAAVFANDAVKNQNNTQAIDVGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ E PA L+ + V++ + AE + E K K+
Sbjct: 480 NTLISARVTEHKPAAVPALDAIKDVVRQKVIAEQAAELAKKDGAAKLAELQKS-KSTDGF 538
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
S + + +S V+ + + + + Y +++V
Sbjct: 539 AAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIYRVNA 588
Query: 579 SKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G Q+ + Q+ + ++ +A L+ + V +
Sbjct: 589 VIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKL 631
>gi|307293346|ref|ZP_07573192.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium chlorophenolicum
L-1]
gi|306881412|gb|EFN12628.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium chlorophenolicum
L-1]
Length = 649
Score = 208 bits (527), Expect = 3e-51, Method: Composition-based stats.
Identities = 129/643 (20%), Positives = 246/643 (38%), Gaps = 18/643 (2%)
Query: 1 MLEIIRKASRTWV----AKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFS 54
ML + R+ R+ A IFL ++ F++ ++ F TV G K+ +
Sbjct: 1 MLSVFRRFIRSKFGAFTALIFLAIIAAAFIMGDITSGKFGSSIGSGETVAKAGGSKLTMA 60
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
F + ++ + + + G ++ D LV+ TL ++ D +
Sbjct: 61 EFQDRVQRVFENARR-SNPGLQIGDFLAQGGGAQVYDQLVASMTLKEYAGDQKVHISKRL 119
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
V +IA+ P F FS + F L RE I E+ D + + ++ G++
Sbjct: 120 VDAQIAQIPAFQDAAGNFSQENFRQLLLRERITEQALRDDIGREILERQMLAPLGLGVKL 179
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
S+ ++ E R V+ IA+P++A L +++K Y PE +RI Y
Sbjct: 180 SDSMVLPYASLLLEARQGTIAVIPASAFKDIAEPTDAQLGDFYKKNAARYTIPEQRRIRY 239
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
+ DV + + ++ E+ Y +NK Y + E R EQL+ P + A +K GK
Sbjct: 240 AVIDVERFAQAAQPTDAEIATYYNQNKAAYAARESRDFEQLILPTEAGAKAIADQVKGGK 299
Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A++ G ++S++ S + + AK+G+ + GS G+ + V+
Sbjct: 300 SLAAAAQDAGLAVSELKDQSRQGLAATASAAIANAGFAAKQGELVGPLRGSLGWALLRVT 359
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+K + + VK +I +R K + + ++E+ +A G S +E+ + +
Sbjct: 360 AVKSTPARTLDAVKGEIVATLRTQKEKRLLNDFTGKIEDQVANGGSFEEVVKDNGLKLET 419
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
P + +GK V+ + LL VF D Y + A
Sbjct: 420 TPFLISSGKQVEDAAYQLPADVQPLLAPVFAMSQDDDAQLIPIAADKRYALAAPGDIQAA 479
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
L +V V +K + E+ + A Q+ + +K G D G +L +
Sbjct: 480 APPPLAKVKALVAMQYKLAQGNEKAKALAEQIRAKVAK-GVKLDDAVAAAGIALPKPQVV 538
Query: 535 NRMDNE---NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
+ + I+ +F+ VK P Y V ++ K G +
Sbjct: 539 GGRRADILRDGQRPPAEIAMLFAMAPNSVKTLPAGQDRGYFVVQLNGIKRGDAGSDKALL 598
Query: 592 SYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNL---IQRYL 627
+ + + ++ ++ + V + N +QR L
Sbjct: 599 NQVRDQLSDVVGQEYGQQFERAVEKELGVKRNPNAVAGVQRAL 641
>gi|170733279|ref|YP_001765226.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia MC0-3]
gi|169816521|gb|ACA91104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia MC0-3]
Length = 645
Score = 208 bits (527), Expect = 3e-51, Method: Composition-based stats.
Identities = 99/643 (15%), Positives = 217/643 (33%), Gaps = 37/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQHLHLTASDNAVRDALM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + L+ +G+ ++Y + LS + V
Sbjct: 120 SDPMIASLKKPDGTIDVERYAQLLSFQGMTPEQYQERVRYSLSLQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + + R V +VL A P++A LT +++ +K ++ PE I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + +++ Y+ N + + V + A A ++ K K
Sbjct: 240 SPAAAAASAQPTEADIKKFYDDNPTHFRTEAQVRVSHIFIAAPGSASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFSLKQGDVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ G+ I + +KP+ F EVK IA ++ AS+ ++ + +
Sbjct: 360 IVQSDLGFHILKATEVKPAVVKPFAEVKDQIAVDLKQQYASKAFSDNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V K + + + +
Sbjct: 420 TLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNPKFLAAVFANDAVKNQNNTQAIDVGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ E PA L+ + V++ + AE + E K K+
Sbjct: 480 NTLISARVTEHKPAAVPALDAIKDVVRQKVIAEQAAELAKKDGAAKLAELQKS-KSTEGF 538
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
S + + +S V+ + + + + Y +++V
Sbjct: 539 AAAQKVSRTQSQGLT----------PAALSAVYKVDAKTLPAYVGVDLGADGYAIYRVNA 588
Query: 579 SKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G Q+ + Q+ + ++ +A L+ + V +
Sbjct: 589 VIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKL 631
>gi|299531702|ref|ZP_07045107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
testosteroni S44]
gi|298720418|gb|EFI61370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
testosteroni S44]
Length = 632
Score = 208 bits (527), Expect = 3e-51, Method: Composition-based stats.
Identities = 107/646 (16%), Positives = 237/646 (36%), Gaps = 48/646 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IRK S+ +V + +++ F+ G++ F+ S TV V + + N+
Sbjct: 1 MFESIRKHSK-FVMILLFLLIIPSFIFVGVNQNYFTESSQ-TVARVDGHDITQQDWDNAH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E + + ++++ S L+ LV L + L ++ +
Sbjct: 59 RAESDRLRAQ-NPTMDAKLLDSPEARYATLEKLVRDRVLAAAAAKMHLTTPDAQLVRTLR 117
Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + + + +G+ + + + + L+ V+G +
Sbjct: 118 EIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLGSVSSTSFTTAA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L QA ++ R + + P+ A L ++E + + ++ PE + Y+
Sbjct: 178 QLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYEAHTNQFKQPEAATVEYVQL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ ++ I +S D+L+ Y++N + PE R ++ ++ A + K K
Sbjct: 238 DLAAVQQGIVLSEDDLRTYYKENAARLAGPEERRASHILINAARDLPAAEREKAKAKAEQ 297
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + + LG F +E + + K+GD +
Sbjct: 298 LLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGREAMVKP--FEEAVFKMKQGDISD 355
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ FG+ I ++ IK SF+E++ + ++ +A K E + + +
Sbjct: 356 VVESDFGFHIIELTGIKQPKVPSFEEMRPKLEADLKQQQAQRKFAEAAEAFSNAVYEQSE 415
Query: 401 M-DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
++ + K+ + V ++ L +F D +K +T V
Sbjct: 416 SLKPVAEKFKLSIHKVENVTREPAPDAQGP----LANKRFLEALFSADSLENKRNTDAVE 471
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
L + + ++ PA + ++EV +K+ + ++AE + + E+
Sbjct: 472 LAPSNLVAGRVLSYAPAHTQSMDEVGEKLKQLYVAHQSAELAKQEGKAKMAEWK------ 525
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
K A L ++ R + + + P + + + Y V K
Sbjct: 526 ---AKPEAAQLPAAVEVGRDQARD--LPREVLDAALRAPTNALPAWEGVDLGNAGYAVIK 580
Query: 576 VTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
V P Q+ ++ + TQ + + + LK + V +
Sbjct: 581 VNRIAQRPAQDAQVLEQQKAQFTQWSSMAEVMAYYEQLKKTFKVQI 626
>gi|240949547|ref|ZP_04753887.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor NM305]
gi|240296120|gb|EER46781.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor NM305]
Length = 624
Score = 208 bits (527), Expect = 3e-51, Method: Composition-based stats.
Identities = 95/642 (14%), Positives = 224/642 (34%), Gaps = 29/642 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + KI ++ + F++ G+ L + + V V + + +F ++
Sbjct: 1 MIEKWHDRTNSLGFKIIFTLVSLSFVLGGIGSGLVAT--DDSAVKVNGEGISQRTFTDAK 58
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++ ++ + G + + + ++ +L++L++ L Q+ + + L+ ++
Sbjct: 59 NRQQNILYSQKGGEAWDLLDKPEYAREFNQSVLNSLINDELLRQYAKSLKLDVGVDQIKS 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI F ++ KF + ++ L G+ Y + + + + +
Sbjct: 119 EIVHDANFQ-QNGKFDNKLYQQTLRNAGLTTDGYAAIVREGMIFSQIEEGIINTSFDLPA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + F+ R V + S L ++E +K PE + Y++
Sbjct: 178 QQEALAKLLFQKRDVRLATYSLADEAKNQTVSPEELQSFYEAHKKQLLTPETFTVEYLVL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ EK+I+I+++++ Y+KNK ++ + + + N+ EA+ Q L G F
Sbjct: 238 TPKDVEKRIQITDEQIATYYDKNKAQFVTKGEANLAHIQVANEAEANAIAQQLNNGADFA 297
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ +LG P + + G + I Y I V
Sbjct: 298 TLAKEKSTDKLSAAQGGNLGWTKAGTFPQAFENAAS--QLQVGQVSQPIKIDNAYHIIKV 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITK-ASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
+ K + +VK I +R ASE S++ +++ +
Sbjct: 356 IDRKAENIIPLAQVKDKITETIRKELLASEYSTVARDMANSAFENSGSLEAVAKVAGLEI 415
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
A + + A + + + M+V++ +
Sbjct: 416 HKTSAFTQANVPAELQHEAVEKALFE--SDLRQTGQNSEALDVGDSTNPRTMFVRVSDFQ 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
R++ LEE TDV+ K K + + S A ++ ++ S T
Sbjct: 474 AEREKTLEEAKTDVEAMVKREKAEKALLSNAEANLVALNEG---------KNNISFGETQ 524
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
+ + + VF+ P ++ + G + E
Sbjct: 525 TLVYAQAQVQQ--PVLAKTVFNMPKPADKATYQIARNVKGDVIIVALDKVSDGTLAEFKP 582
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ L + ++ L+ + S+ V+ +++ + +
Sbjct: 583 LEPQFAEANRTILRNDLVKDLRERASIDVNAEFMEQLITPAQ 624
>gi|264677817|ref|YP_003277723.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
testosteroni CNB-2]
gi|262208329|gb|ACY32427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
testosteroni CNB-2]
Length = 632
Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats.
Identities = 108/646 (16%), Positives = 237/646 (36%), Gaps = 48/646 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IRK S+ +V + +++ F+ G++ F+ S TV V + + N+
Sbjct: 1 MFESIRKHSK-FVMILLFLLIIPSFIFVGVNQNYFTESSQ-TVARVDGHDITQQDWDNAH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E + + ++++ S L+ LV L + L ++ +
Sbjct: 59 RAESDRLRAQ-NPTMDAKLLDSPEARYATLEKLVRDRVLAAAAAKMHLTTPDAQLVRTLR 117
Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + + + +G+ + + + + L+ V+G +
Sbjct: 118 EIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLGSVSSTSFTTAA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L QA ++ R + + P+ A L ++E + + ++ PE + Y+
Sbjct: 178 QLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYEAHTNQFKQPEAATVEYVQL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ ++ I +S D+L+ Y++N + PE R ++ K+ A + K K
Sbjct: 238 DLAAVQQGIVLSEDDLRTYYKENAARLAGPEERRASHILINAAKDLPAAEREKAKAKAEQ 297
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + + LG F +E + + K+GD +
Sbjct: 298 LLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGREAMVKP--FEEAVFKMKQGDISD 355
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ FG+ I ++ IK SF+E++ + ++ +A K E + + +
Sbjct: 356 VVESDFGFHIIELTGIKQPKVPSFEEMRPKLEADLKQQQAQRKFAEAAEAFSNAVYEQSE 415
Query: 401 M-DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
++ + K+ + V ++ L +F D +K +T V
Sbjct: 416 SLKPVAEKFKLSIHKVENVTREPAPDAQGP----LANKRFLEALFSADSLENKRNTDAVE 471
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
L + + ++ PA + ++EV +K+ + ++AE + + E+
Sbjct: 472 LAPSNLVAGRVLSYAPAHTQSMDEVGEKLKQLYVAHQSAELAKQEGKAKMAEWK------ 525
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
K A L ++ R + + + P + + + Y V K
Sbjct: 526 ---AKPEAAQLPAAVEVGRDQARD--LPREVLDAALRAPTNALPAWEGVDLGNAGYAVIK 580
Query: 576 VTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
V P Q+ ++ + TQ + + + LK + V +
Sbjct: 581 VNRIAQRPAQDAQVLEQQKAQFTQWSSMAEVMAYYEQLKKTFKVQI 626
>gi|240851485|ref|ZP_04752236.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor 202]
gi|240310003|gb|EER48295.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus minor 202]
Length = 624
Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats.
Identities = 94/642 (14%), Positives = 223/642 (34%), Gaps = 29/642 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + KI ++ + F++ G+ L + + V V + + +F ++
Sbjct: 1 MIEKWHDRTNSLGFKIVFTLVSLSFVLGGIGSGLVAT--DDSAVKVNGEGISQRTFTDAK 58
Query: 61 KQELGMISQKIGF---VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++ ++ + G + + + ++ +L++L++ L Q+ + + L+ ++
Sbjct: 59 NRQQNILYSQKGGEAWDLLDKPEYAREFNQSVLNSLINDELLRQYAKSLKLDVGVDQIKS 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI F ++ KF ++++ L G+ Y + + + + +
Sbjct: 119 EIVHDANFQ-QNGKFDNNLYQQALRNAGLTPDGYAAVVREGMIFSQIEEGIINTSFDLPA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + F+ R V + S L +++ +K PE + Y++
Sbjct: 178 QQEALAKLLFQKRDVRLATYSLADEAKNQTVSPEELQSFYDAHKKQLLTPETFTVEYLVL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ EK+I+I+++++ Y+KNK ++ + + + N+ EA+ Q L G F
Sbjct: 238 TPKDVEKRIQITDEQIATYYDKNKAQFVTKGEANLAHIQVANEAEANAIAQQLNNGADFA 297
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ +LG P + + G + I Y I V
Sbjct: 298 ALAKEKSTDKLSAAQGGNLGWAKAGTFPQAFENAAN--QLQVGQVSQPIKIDNAYHIIKV 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITK-ASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
+ K + +VK I +R ASE S++ +++ +
Sbjct: 356 IDRKAENVIPLAQVKDKITETIRKELLASEYSTVARDMANSAFENSGSLEAVAKVAGLDI 415
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + + A + + + M+V+I +
Sbjct: 416 HKTSAFTQSNVPAELQHEAVEKALFE--SDLRQTGQNSEALDVGDSTNPRTMFVRISDFQ 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
R++ LEE TDV+ K K + + S A + ++ S T
Sbjct: 474 AEREKTLEEAKTDVEAMVKREKAEKTLLSNAEANLAALNEG---------KNNISFGETQ 524
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
+ + + VF+ P ++ + G + E
Sbjct: 525 TLVYAQAQAQQ--PVLAKTVFNMPKPTDKATFQIARNVKGDVIIVALDKVSDGTLAEFKP 582
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ L + ++ L+ + S+ V+ + + + +
Sbjct: 583 LEPQFAEANRTILRNDLVKDLRERASIDVNAEFMDQLITPAQ 624
>gi|221215062|ref|ZP_03588029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
multivorans CGD1]
gi|221164998|gb|EED97477.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
multivorans CGD1]
Length = 644
Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats.
Identities = 94/655 (14%), Positives = 223/655 (34%), Gaps = 37/655 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDESANVAAVNGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGAQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + ++ +G+ ++Y + L+ + V
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + + R V +VL + P++A L +++ +K + PE I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTGDYASKVQPTDAQLAAYYDAHKQQFATPETATIEYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ ++ +++ Y+ N + + V + +A A ++ K K
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+G+ +
Sbjct: 300 LLADVKAHPDQFAQIAEKNSQDAPSATKGGDLGFITRGSTAGGKAFDDAAFALKQGEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G+ I + +KPS F EVK +IA ++ A++ ++ + +
Sbjct: 360 VVQSDLGFHILKATEVKPSIVKPFAEVKDEIAATLKQQYAAKAFSDNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVTPTPNPQLPATSPLNNAKFLAAVFANDSVKAHNNTQAIDVGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + PA L+ + V++ + AE + E K K+
Sbjct: 480 NTLISARVTDYKPAAVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KSTEGF 538
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
S +++ +S V+ + + + + Y +++V
Sbjct: 539 AAAQKIS----------RTQSQGLSPAALSAVYKVDPKTLPAYVGVDLGADGYAIYRVNA 588
Query: 579 SKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
G Q+ + Q+ + ++ +A L+ + V ++ + + +
Sbjct: 589 VIPGSAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKLYGSTASQSQGND 643
>gi|167586935|ref|ZP_02379323.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ubonensis Bu]
Length = 644
Score = 207 bits (525), Expect = 6e-51, Method: Composition-based stats.
Identities = 97/654 (14%), Positives = 222/654 (33%), Gaps = 37/654 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDESANVAAVNGHKITRVEFDGTY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDRARQALGAQFDLKSFDTPEHRKEVLDGLIQQRVLADETQRLHLTASDNAVREALL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + L+ +G+ ++Y + L+ + V
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + + R V +VL + P++A L +++ K ++ PE I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAYYDAQKQSFATPETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ ++ +++ Y+ N + + V + +A A ++ K K
Sbjct: 240 SPAAAAANAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAAGDASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGDVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G+ I + +KP+ F EVK IA +++ AS+ ++ + +
Sbjct: 360 VVQSDLGFHILKATEVKPAAVKPFAEVKDAIAVELKQQYASKAFSDNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVTPTPNPALPPTSPLNNAKFLAAVFATDSVKSRNNTQAIDIGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + PA L+ + V++ + AE + E K
Sbjct: 480 NTLISARVTDYKPAAVPALDAIKDAVRQKVIAEQAAELAKKDGAAKLAELQK-------- 531
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
A ++R + +S ++ + + + + Y +++V
Sbjct: 532 -SKATAGFAAAATLSRT--QAHGLTPAALSAIYKVDAKALPAYVGVDLGADGYAIYRVNA 588
Query: 579 SKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
G Q+ + Q+ + ++ +A L+ + V ++ + DG
Sbjct: 589 VIPGSAVDPQQLAAAQQQMAQVDAQSEGEAYLAALRDRSKVKLYGSTANAAQDG 642
>gi|320354707|ref|YP_004196046.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
propionicus DSM 2032]
gi|320123209|gb|ADW18755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
propionicus DSM 2032]
Length = 626
Score = 207 bits (524), Expect = 6e-51, Method: Composition-based stats.
Identities = 107/644 (16%), Positives = 241/644 (37%), Gaps = 38/644 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML IIRK +++ V + +V++ + F+ WG+ L + V V +++ + F ++
Sbjct: 1 MLNIIRKNAQSIVVQSIVVIIAIVFIFWGVGTNL--NDNPNAVAVVNGKEISYRDFQQNY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + Q+ G + + S+G+ ++L+ L+ L Q E +G+ +I
Sbjct: 59 ERAIEGYKQQFGGQLPEKFVESLGVKDQVLNQLIQSELLRQGAEKMGMTISKEATQRKIQ 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+F ++ +F D + + LA+ ++ + L V S LD
Sbjct: 119 DLEVFRDENGRFDLDRYKTVLAQNRLSPTSFEAGIGNDLLMNRAVESLGAFATVSAAELD 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
F + + Y + + +A L W+E+ K Y+ P +++Y+ F
Sbjct: 179 NWVEFLDQEVKLAYTTVRSSAYEPQVKVDDASLQSWYEQTKQQYKTPPQSKLAYLSFPFA 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQ 288
+ K + ++++ +Q Y+++ E Y +PE R ++F + A++
Sbjct: 239 DDLKAVAVNDEAVQRYYQEHAELYATPEQRRARHILFKIADGDTAETKAAKKAAAEKVLA 298
Query: 289 SLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
++ G F LA++ + S LG FS+ + + + + G+ + V+
Sbjct: 299 QIRGGGDFALLAKQFSEDTSKEKGGDLGFFSRGQMVEP--FERSVFSLRTGEISGVVETP 356
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
+GY + + IKP+ T S +EV+ I ++ + E + S+ + S
Sbjct: 357 YGYHLVKLEEIKPATTRSLEEVRASIRAELERQGVKAITFKKASTAYEEIIRAGSLTKYS 416
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + K + + V G Y
Sbjct: 417 EKNAVAVHRTDFF------QQDKPPKDTLISDPAFLQSAFALHKGELSSIVETATG-YAI 469
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ ++++ + +L V V D+ K+ E S A Q++ ++ + D+
Sbjct: 470 IFVEDARESVVPELAIVRERVAADFIKEKSVELARSAAEQMLKTAKEQQRFPSDV----- 524
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFS-GPVEMVKCFPIENGLSYVVFKVTNSKVG-- 582
+ + R N + F+ I G + ++++ S+ G
Sbjct: 525 -ERKESAYLKRTGPAN-GVPEEIRRDAFARLGQGAFPDKVIVEGNTCYLYQILESRRGQG 582
Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
++ L L+ I L+ + + + ++Q
Sbjct: 583 DTDAAKRQALEQQLLAAHKNTLMADWIDQLRKEAKIWTNTKMLQ 626
>gi|161524527|ref|YP_001579539.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
multivorans ATCC 17616]
gi|189350717|ref|YP_001946345.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia multivorans
ATCC 17616]
gi|160341956|gb|ABX15042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
multivorans ATCC 17616]
gi|189334739|dbj|BAG43809.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia multivorans
ATCC 17616]
Length = 644
Score = 207 bits (524), Expect = 6e-51, Method: Composition-based stats.
Identities = 94/655 (14%), Positives = 222/655 (33%), Gaps = 37/655 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDESANVAAVNGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGAQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + ++ +G+ ++Y + L+ + V
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + + R V +VL + P++A L +++ +K + PE I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAYYDAHKQQFATPETATIEYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ ++ +++ Y+ N + + V + +A A ++ K K
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+G+ +
Sbjct: 300 LLADVKAHPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G+ I + +KPS F EVK +IA ++ A++ ++ + +
Sbjct: 360 VVQSDLGFHILKATEVKPSIVKPFAEVKDEIAATLKQQYAAKAFSDNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVTPTPNPQLPATSPLNNAKFLAAVFANDSVKAHNNTQAIDVGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + PA L+ + V++ + AE + E K K+
Sbjct: 480 NTLISARVTDYKPAAVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KSTEGF 538
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
S +++ +S V+ + + + + Y +++V
Sbjct: 539 AAAQKIS----------RTQSQGLSPAALSAVYKVDPKTLPAYVGVDLGADGYAIYRVNA 588
Query: 579 SKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
G Q+ Q+ + ++ +A L+ + V ++ + + +
Sbjct: 589 VIPGSAVDPQQLAAAQQQTAQVEAQSEGEAYLAALRDRSKVKLYGSTASQSQGND 643
>gi|160898321|ref|YP_001563903.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
SPH-1]
gi|160363905|gb|ABX35518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
SPH-1]
Length = 631
Score = 206 bits (523), Expect = 7e-51, Method: Composition-based stats.
Identities = 117/646 (18%), Positives = 234/646 (36%), Gaps = 48/646 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IRK S+ +V + +++ F+ G++ F+ S V V ++ + + N+
Sbjct: 1 MFESIRKHSK-FVMILLFLLIIPSFIFVGVNQNYFTESSV-IVARVDGHEIKQADWENAH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E + + ++ + S L+ +V L ++ + L A ++ +
Sbjct: 59 RMESDRLRAE-NPNIDPKLLDSPQARYATLEKMVRDQVLAAAVQKMHLAASDAQLVRTLQ 117
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + + + +G+ + + + + LS V+G G ++
Sbjct: 118 EIPAIAALKKPDGSMDAEAYRALVGSQGLTPEGFEANLRRELSMNQVMGGVTGTAFATDT 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ QA ++ R V + P+ A L +++ + ++ E ++ Y+L
Sbjct: 178 QVKQAIDALYQRREVQVARFEASAYASKVQPTEADLKAYYDAHTSQFQQSEQAKVEYLLL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
DV E I +S D++++ Y +N E+ PE R ++ K+A A Q K K
Sbjct: 238 DVPSIEAGITLSEDDVRSYYNQNAERLAGPEERRASHILINASKDAPAAEQEKAKAKAEE 297
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + S LG F + + + K GD +
Sbjct: 298 LLAELRKDPKRFAELAKANSQDGGSAASGGDLGYFGRGAMVKPFEDAAFGM--KVGDISD 355
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGT 399
V+H FGY I + +IK SF++++ + +++ +A K E +
Sbjct: 356 VVHSDFGYHIISLVDIKKPKAPSFEQMRPKLEAELKQQQAQRKFAELAEGFSNAVYEQSD 415
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
S+ ++ + K+ V G V + L +F D +K +T V
Sbjct: 416 SLQPVAEKFKLTVQKADHVTR----QPGPNVKGPLANPRFLEALFSSDSLNNKRNTDAVE 471
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
L + ++ E PAR + EV ++ + K+AE + + +
Sbjct: 472 LGSNQLVAGRVVEYTPARTLPMAEVGDKLRTLYVAQKSAELAKADGEAKLAAWK------ 525
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
K A L I+R E + + + P + + + Y V K
Sbjct: 526 ---AKPDAAQLPAAKVISRDQPEGQ--PREVVDSALRAPTAQLPAWTGVDMGAQGYAVVK 580
Query: 576 VTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ P Q + + LK Q V +
Sbjct: 581 INRIVERPADDAQAAAAQKQDFLRSSAVAEAMAYYELLKKQLKVQI 626
>gi|254511419|ref|ZP_05123486.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
gi|221535130|gb|EEE38118.1| conserved hypothetical protein [Rhodobacteraceae bacterium KLH11]
Length = 613
Score = 206 bits (523), Expect = 8e-51, Method: Composition-based stats.
Identities = 111/606 (18%), Positives = 242/606 (39%), Gaps = 28/606 (4%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
G + TV VG + V ++ ++E+ + + G + +A +GLD+
Sbjct: 25 AGFGATSLTG-TVRTVAQVGDESVSVDAYFRELQREIRAVEAQTGQAMQIAQAHDLGLDQ 83
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
L L++ A LD + +G+ + EI + P F G + F + + +L + G+
Sbjct: 84 LALSRLIALAALDNEVAQLGISIGDENLQNEIVQIPAFQGVNGTFDREAYRFQLEQVGMT 143
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA- 206
+ E+ K +RT V G +GG+ L + + RS L+ +
Sbjct: 144 DAEFESDLRKESARTIVQGAVIGGVEMPLALTEALANYVLARRSFTLATLSAEALETPVP 203
Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
P++A + ++++ D + P KR++Y + +EI D L+ Y++ +Y
Sbjct: 204 QPTDAQIQAFYDENTDRFTLPRTKRLTYAILSPEMLLDAVEIDEDALRRLYDQRAGQYLQ 263
Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKK-GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
PE R VE+L +P+++ A EA L+ G F QL ++ LSD+ LG ++E + D +
Sbjct: 264 PERRLVERLPYPSEEAATEALAQLEVGGADFEQLVRDRQLELSDVDLGDVTREDLGDAA- 322
Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
A D + FG + ++ VSF+E + ++ ++ +A ++
Sbjct: 323 --DTVFAAGIDDVVGPLPTVFGPALFRINGTLAENNVSFEEARPELREELAADRARRLIE 380
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + + LA G ++++++ ++ + +G V
Sbjct: 381 AQAEDINDMLAGGATLEDLAADTEMELGTIDWTQQSGDGV---------AAYDGFRAAAV 431
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
L DGS +++ + + R L+ V + W V+TA + ++A+
Sbjct: 432 AVQEGDFPEIGFLEDGSIFALRLNQVLEPRPEPLDSARARVAEAWMQVETARALQNQADA 491
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
++ + + +G G N + R + D ++QVF ++ P
Sbjct: 492 ILTQLATDGD-----FTATGLPFRVENALTRTAFLDD-VPVDFMAQVFELEPGELRVIPG 545
Query: 566 ENGLSYVVFKVTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
++ ++ + +D + + Q + +++ D + +++ +
Sbjct: 546 NGNA--LIVRLDEELPPAETDEQRQMQDALAAQMNQALAQNIFDIYVRNAQTRARPVLDQ 603
Query: 621 NLIQRY 626
+
Sbjct: 604 QALNAV 609
>gi|165976428|ref|YP_001652021.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|165876529|gb|ABY69577.1| peptidyl-prolyl cis-trans isomerase D [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 625
Score = 206 bits (523), Expect = 9e-51, Method: Composition-based stats.
Identities = 98/639 (15%), Positives = 228/639 (35%), Gaps = 32/639 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + ++ V KI ++ + F+I V G + V V ++ +F +
Sbjct: 1 MIENMHERTKGPVFKIIFALVSLSFVI--TGIGTGLVGGGTAAVKVNGTEITQQAFNAAK 58
Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ +++ ++G E A+ + +L+ LV L Q+ +++ L ++
Sbjct: 59 NRQQSVLNAQMGERFWDLLDTPEYAKQFN--QSVLNGLVDEELLRQYAKELKLGISAEQI 116
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI SP+F +D KFS+D++ L G++ Y + + + + +G
Sbjct: 117 KSEIVNSPVFQ-QDGKFSNDLYQQTLRSNGLSADGYAAIVNEGMLFSQIQEGVIGSDFNV 175
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + R V + S L ++++ +K PE + Y+
Sbjct: 176 PEQEALLAKLLLQKRQVRLANYSIAKEATNQAASAEELQKYYDAHKSELIEPEKLTVEYV 235
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ +++++++++ YEKNK Y + + N+ +A + +K G
Sbjct: 236 TLTPTDVANNVQVNDEQVKTYYEKNKADYATKGETRFAHIQLANETDAKAVAEQVKNGAD 295
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +LA+ + LG P ++ + + G + V++ Y I
Sbjct: 296 FAELAKTKSTDKLSAAQGGDLGWAKAGTFPKA--FEAAAASLQDGQVSAVVNVDGAYHII 353
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
V K + ++VK I +R + + + S++ +++ +
Sbjct: 354 KVLERKAETVIPLEQVKDQITKTIRQELLLTEYSNIAREMANRAFENSGSLESVAQAGGV 413
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + R G++ P ++ ++ +
Sbjct: 414 KVQKSAQFTQQNVPAELNNEKVLKALFNGELRQSGQNSDAMDIGDEHNPKTMFV--RVSD 471
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
R + LEE +V + K K + + +KA + V ++ K+ S
Sbjct: 472 YQAERVKTLEEAKAEVTEAIKQQKAEQILLAKAEEQVKALNEG--------KDEKVSFGN 523
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ E++ VFS P V ++ + G ++E
Sbjct: 524 AQTLVFAQAESE--NPLLAQTVFSMPKPADKAVYQVARNQQGDVIIVALDKVIDGSLEEF 581
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
Q L + ++ L+++ S+ V+ + + +
Sbjct: 582 KPLSVQFAQAEQTLLRNDLLKDLRARASIEVNQDFMGQA 620
>gi|238026979|ref|YP_002911210.1| peptidyl-prolyl cis-trans isomerase D [Burkholderia glumae BGR1]
gi|237876173|gb|ACR28506.1| Peptidyl-prolyl cis-trans isomerase D [Burkholderia glumae BGR1]
Length = 647
Score = 206 bits (523), Expect = 9e-51, Method: Composition-based stats.
Identities = 84/651 (12%), Positives = 223/651 (34%), Gaps = 39/651 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R + + L+++ G+ S+ V SV +K+ + F +++
Sbjct: 1 MLDFFRNHQR-LMMFLLLLIVLPGLAFVGVQGFRDFFDDSANVASVDGRKITRAEFDSAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G +++ + +++LD ++ L + + L A V +
Sbjct: 60 RQQIDQARQALGARYDAKVIDTPERRQQLLDGMIEQRALADEVRRLHLTASDAAVREALL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+P D + + LA +G+ +Y + L++ + +
Sbjct: 120 SNPIVAAMRKPDGSIDAERYTQLLAMQGMTPDQYQESIRYQLTQQQLPSNLIDSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY-IL 236
+ + R + +VL A P++A ++ +++ +K + PE I Y +
Sbjct: 180 VARSLTDLAQQQREIQALVLKPADYAAKVQPTDAQISAYYDAHKQAFATPETATIQYLVF 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +++ Y+ N +Y + V + + A A ++ + K
Sbjct: 240 TPATAAASATPPTEADIRKYYDDNTARYRTEAQVRVSHIFIAAARGASAADKAAARAKAD 299
Query: 297 IQLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
LA ++ + LG ++ + D K G+ +
Sbjct: 300 RLLADVKAHPDQFAQIAEKNSQDAPSAAKGGDLGYITRGSTAGGAAFDDAAFALKPGEIS 359
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
V+ G+ I +++KP+ F EVK+ IA +++ A++ ++ + +
Sbjct: 360 KVVESDLGFHILKATDVKPAIVKPFDEVKESIAAELKQQYAAKAFSDNSEGFSSSVYEKA 419
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + + +++ V + K + + +
Sbjct: 420 KSLQPTADKYKLTLQTATVTPQPNPALPPDSPLNNAKFLAAVFAPDSVKNGNNTQAIDVG 479
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + + + PA L+ + V++ ++A+ + K
Sbjct: 480 NNTLIAAHVMSDKPAAVPPLDAIKDAVRQKLIADESAKLAKQDGMARLAALQKSKAT--- 536
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN---GLSYVVFKV 576
L +I+R D ++ ++ + + + + Y +F+V
Sbjct: 537 ------TGFLPAEKISRTQTL--GLPPDAVAAIYKVDPKSLPAYVGVDLGANGGYAIFRV 588
Query: 577 TNSKVGPV---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
Q+ + Q+ + ++ + L+++ V ++ ++
Sbjct: 589 NAIVAPAPADPQQLAAAQQQIAQVYAQSESEAFMKALRARAKVKLYGSVAD 639
>gi|221198210|ref|ZP_03571256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
multivorans CGD2M]
gi|221209208|ref|ZP_03582200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
multivorans CGD2]
gi|221170946|gb|EEE03401.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
multivorans CGD2]
gi|221182142|gb|EEE14543.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
multivorans CGD2M]
Length = 644
Score = 206 bits (522), Expect = 1e-50, Method: Composition-based stats.
Identities = 93/655 (14%), Positives = 223/655 (34%), Gaps = 37/655 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDESANVAAVNGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGAQFDIKAFDTPDHRKQVLDGLIQQRVLADETQRLHLTASDNAVREALL 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + ++ +G+ ++Y + L+ + V
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLMSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKS 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + + R V +VL + P++A L +++ +K + PE I Y+++
Sbjct: 180 LAQRLSELAAQQREVQALVLKTSDYASKVQPTDAQLAAYYDAHKQQFATPETATIEYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ ++ +++ Y+ N + + V + +A A ++ K K
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRTEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+G+ +
Sbjct: 300 LLADVKARPDQFAQIAEKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGEISG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G+ I +++KPS F EVK +IA ++ A++ ++ + +
Sbjct: 360 VVQSDLGFHILKATDVKPSIVKPFAEVKDEIAATLKQQYAAKAFSDNAEGFTSTVYEKAK 419
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + ++I V K + + + +
Sbjct: 420 SLQPAADKYKLTIQTATVTPTPNPQLPATSPLNNAKFLAAVFANDSVKAHNNTQAIDVGN 479
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + ++ + PA L+ + V++ + AE + E K K+
Sbjct: 480 NTLISARVTDYKPAAVPALDAIKDAVRQKVVAEQAAELAKKDGAAKLAELQKS-KSTEGF 538
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
S +++ +S V+ + + + + Y +++V
Sbjct: 539 AAAQKIS----------RTQSQGLSPAALSAVYKVDPKTLPAYVGVDLGADGYAIYRVNA 588
Query: 579 SKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
G Q+ + Q+ + ++ + L+ + V ++ + + +
Sbjct: 589 VIPGSAVDPQQLAAAQQQMAQVEAQSEGEAYLTALRDRSKVKLYGSTASQSQGND 643
>gi|285808228|gb|ADC35762.1| peptidyl-prolyl [uncultured bacterium 293]
Length = 640
Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats.
Identities = 117/655 (17%), Positives = 240/655 (36%), Gaps = 45/655 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFSSFINS 59
L +R+ R W+ + L V + F++ + V VG++K+ F +
Sbjct: 3 LGYMRRH-REWLKYMLLAV-VLAFILLYIPAFQAGPGGGPGEEVARVGQEKITAGEFDRA 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ ++ + ++ V+ +G+ +++L+ L+ G + Q +GL D V +I
Sbjct: 61 FSRQRDALREQ---GVDPAMLEQLGVREEVLNGLIDGKLIVQEARRLGLAVDDEAVAAQI 117
Query: 120 ARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
R + + +F D RLA +GI+E E + + L + + G+ S+
Sbjct: 118 HR--EYQSRGGEFVGTDEIRRRLALQGISEDEKAEQVREQLLVQRLYALVTDGVHVSDQD 175
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
++ R E V+Y+ ++ A ++ + F+ ++ YR PE + I Y+L D
Sbjct: 176 AEKEFRRSSEKVKVEYVAVDAAPFATRATATDEEVAARFQSRREAYRIPERRVIGYLLLD 235
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------ 286
K++++S+ +++ YE ++ ++ P+ + ++ AD
Sbjct: 236 AMALSKEVKVSDVDIRTYYEDHETQFQQPDEACARHIEVKVKQTADAPAGHTEEEARVLA 295
Query: 287 ---FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
+K G F ++A++ + LG E L +IF+L
Sbjct: 296 QKLLDQVKGGADFAEVAKKSSEDPGTSSRGGDLGCGGPETW-GPELGQAIFTLPVNQVSD 354
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
+ + G+ I V + + VK+ I + + K E +E ++ LA G
Sbjct: 355 LIRTQAHGFHIVQVLSRRQQGVQPLDSVKEGIRHILVQGKTRELAEERSSKISAALAKGE 414
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+++ + + + + LL R F S
Sbjct: 415 SLEKAGQLYGLTVQKGAPIARGQRVPP-------LDSPDLLARAFTLKRGESNPEPFGTA 467
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
G + + R +L EV V+ D + K KA QL + G +
Sbjct: 468 QGWLFI-DVLDIQAPRLPELAEVQDRVRADLQDEKARALARDKAVQLRAQAEGAGLDKAA 526
Query: 520 IGKNLGA-SLLTTNQINRMDNENKFFGYDGIS-QVFSGPVEMVKCFPIENGLSYVVFKVT 577
+ G TT + R + + FS PV+ + + + Y V +V
Sbjct: 527 VALGPGLVRKETTTPVTRGQSFGDLGTNQALEDAAFSLPVQGLSEA-LPSPGGYAVLRVL 585
Query: 578 NSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+K + +S L Q + L + I + ++ + ++R
Sbjct: 586 EKTPFDPAAFAAQKAEVVSKLEQQQKRQLFQAYIERARDRFPIERRPEALRRLKG 640
>gi|149192497|ref|ZP_01870682.1| peptidyl-prolyl cis-trans isomerse D [Vibrio shilonii AK1]
gi|148833670|gb|EDL50722.1| peptidyl-prolyl cis-trans isomerse D [Vibrio shilonii AK1]
Length = 432
Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats.
Identities = 86/428 (20%), Positives = 185/428 (43%), Gaps = 12/428 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E IR+ + KI L ++ + F+ G+ + G +T VG ++ F ++
Sbjct: 1 MMERIREGVNSIAVKIILGLIILSFVFAGVGSYIAGGIG-NTAAKVGNVEIGRGEFEQAY 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G ++ + + K +LD +++ L+Q E +GL ++
Sbjct: 60 QNERNRMQSQLGDYFSTLLGDPSYVASFRKSVLDRMINDVLLEQHAESLGLRISDAQIRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF D++ + L R G + + ++ + L R ++ G
Sbjct: 120 MILEMPQFQN-DGKFDQDIYQATLRRAGFSADSFAEYLRRDLVRNQLLTALQGSEFTLPS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R + + L+ A ++ + +++E+ + PE +++YI
Sbjct: 179 EIELQSKLLTQTRDIKTLTLSLADFSKKAQITDEEIQKYYEENPGQFTRPEQVKVAYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--FQSLKKGKK 295
+ ++++++DE+Q Y+++ +KY + E R V ++ EA L G
Sbjct: 239 SAQALKDQVKVTDDEIQKYYDEHLDKYSTSEQREVSHILVQGDDEAKAQAILDELNAGAD 298
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+E+ + SLG ++ + D + ++ F+L GD T ++ FGY I
Sbjct: 299 FATLAKEKSEDIGSSEEGGSLGWIERDVM-DPAFEEAAFALKNVGDTTGLVKSDFGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ IK S + EVK +I +++ A ++ E S+D+ ++
Sbjct: 358 KLDAIKASESKPLAEVKDEIIAELKDQVAVDEFYNLQTTREGCFRYPDSLDDAAKAVNQK 417
Query: 412 SIDLPLVD 419
+ +
Sbjct: 418 VVTTDFIS 425
>gi|89054374|ref|YP_509825.1| putative peptidyl-prolyl cis-trans isomerse D [Jannaschia sp. CCS1]
gi|88863923|gb|ABD54800.1| putative peptidyl-prolyl cis-trans isomerase D [Jannaschia sp.
CCS1]
Length = 617
Score = 205 bits (520), Expect = 2e-50, Method: Composition-based stats.
Identities = 118/627 (18%), Positives = 244/627 (38%), Gaps = 28/627 (4%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K I + +L F+ G+S V SVG ++ + + E+
Sbjct: 7 KKVSNVFVWILMGLL---FVALAGFGIGSFSGGASQVGSVGDVEITADDYFRALNNEINA 63
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
S V R+ G+D +IL L + A L +G+ V +IA+ F
Sbjct: 64 QSADERRAVPFAEIRARGIDAQILAGLTARAALSHEAGAMGISVGDAEVAAQIAQVQAFQ 123
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
F + + L ++G +E+ + + ++R + +GG+ P+ + + +
Sbjct: 124 NTSGNFDRNTYEFVLQQQGATPREFEEDTREDVARALLQTAVIGGLTPNEIFAETITAYQ 183
Query: 187 FENRSV-DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
E R V IA+P++A L +++++ + + PE +RI+Y
Sbjct: 184 SETRDFTRLEVREGDLTVPIAEPTDAELAAYYDEFPERFTRPEARRITYAWIIPSAIMDD 243
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE-ADEAFQSLKKGKKFIQLAEEQG 304
+EI D L+ Y+ ++Y PE R +E+LVF + E + F L ++
Sbjct: 244 VEIDEDALRELYDDRIDEYVQPERRLLERLVFNSDAEVDAALAAIEAEETDFDTLVADRD 303
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
+L D+ LG + + A +I + + + G + V+ + S V F
Sbjct: 304 LTLEDVDLGEIAADD--LSDAAAAIIFADEDSELLGPVPSPLGPALFRVNAVLQSSEVPF 361
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
+E + D++ ++ A ++ + + +++ LA G +++E+S + L +D+
Sbjct: 362 EEARDDLSAELAQEGARRQIDDMREGIDDLLASGATLEELS---DGTVMTLGTLDYTPAS 418
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+G + L DG +++ E +P L+E+
Sbjct: 419 EEGI------AAYDNFRDAAVSVQDSDFPELLELSDGGLFALRLDEVVPPTLPPLDEIEA 472
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
+V + W+ + V+ +A+QLV + ++ G D+G ++ R +
Sbjct: 473 EVAEAWQATALRDAVAERASQLVAQLAQ-GATLEDLGDTA------EERLIRRQDLLPDL 525
Query: 545 GYDGISQVFSGP-VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK--- 600
++QVF V P + V NS V + +S + Q + +
Sbjct: 526 PATTVAQVFQLEGTGDVVMIPGADAAHIVRLDTINSGVRDAPDTSVILSIMNQSIAQSMA 585
Query: 601 -DLLDSVIAYLKSQYSVTVHDNLIQRY 626
D+ ++ L++ +T + +I
Sbjct: 586 VDIFEAYGQALQANAGITTNQGVINAV 612
>gi|322514009|ref|ZP_08067083.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
25976]
gi|322120159|gb|EFX92120.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
25976]
Length = 625
Score = 205 bits (519), Expect = 2e-50, Method: Composition-based stats.
Identities = 96/642 (14%), Positives = 224/642 (34%), Gaps = 38/642 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E + + + V KI ++ + F+I G+ L V ++ V + +F +
Sbjct: 1 MIEKMHERTNGPVFKIIFALVSLSFVITGIGTGLAGV--DTSAAKVNGTAIEQQAFNAAK 58
Query: 61 KQELGMISQKIGFVV-----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ +++ ++G E A + IL+ L+ L Q+ +++ L ++
Sbjct: 59 SRQQNILNTQMGERFWDLLDTPEYAAQFN--QSILNGLIDDELLRQYAQNLKLGISAEQI 116
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI SP F +D KF++ ++ L G++ Y + + + + VG
Sbjct: 117 KSEIVHSPTFQ-QDGKFNNQLYQQALRNNGLSADGYAAIVNEAMLFSQIQEGIVGSHFSV 175
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + + R V + S L +++ +K+ + PE I Y+
Sbjct: 176 PAEQELLAKLLLQKRQVRLANYSVAAEAQNQTASGEELQAYYDAHKNAFVEPEKLAIEYV 235
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
K ++++++++ YEKNK Y + + + N+ +A Q L G
Sbjct: 236 TLTPENVAKNVQVTDEQIATYYEKNKADYVTQGETHIAHIQVANEADAKALEQQLAGGAD 295
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA+ + LG P + + G + ++ Y I
Sbjct: 296 FSALAKAKSTDKLSAAQGGDLGWAKVGTFPKAFEDAAN--GLQVGAVSQAVNVDGAYHII 353
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKI 410
V K + ++VK +IA +R + + + S++ +++ +
Sbjct: 354 KVLARKNEQAIPLEQVKDNIAKTIRNELLLTEYSNLAREMANKAFENNGSLESVAQAGGV 413
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS---YMWVQ 467
+ + + + D M+V+
Sbjct: 414 AIQKTAQFTQQNVPAELNNEKVL-----KALFSGELRQSGQNSDALDIGDEHNPKTMFVR 468
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + R + L+E DV+ K K + + +KA +++ + + G+
Sbjct: 469 VSDYQADRVKTLDEAKADVEVAVKQQKAEQALIAKAQEII-KLLESGQ-------AADVQ 520
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEM---VKCFPIENGLSYVVFKVTNSKVGPV 584
+ + + VFS + + V+ + G
Sbjct: 521 FGAAQTLVYAQAQGQQ--PVLAQTVFSMTKPTDKATYSVARDEQGNVVIVALDKVMDGSS 578
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+E + Q L + ++ L+++ S+ V+++ +++
Sbjct: 579 EEFKPLAAQFNQADQLLLRNDLLKDLRAKASIEVNEDFMEQL 620
>gi|268592032|ref|ZP_06126253.1| peptidyl-prolyl cis-trans isomerase D [Providencia rettgeri DSM
1131]
gi|291312424|gb|EFE52877.1| peptidyl-prolyl cis-trans isomerase D [Providencia rettgeri DSM
1131]
Length = 651
Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 101/630 (16%), Positives = 239/630 (37%), Gaps = 23/630 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +R + + + KI L ++ + F++ G+ + ++ V Q + ++
Sbjct: 29 MMENLRTKANSPLLKIILALIILSFVLGGVMMGGLGGNSANNAAEVNGQSISREQLQQAF 88
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+QE + + +G + S L ++ LDNL++ ++Q+ ++ L A ++
Sbjct: 89 QQERQSLQEYLGDKFSEVASNEESMNLLRRQALDNLINNELINQYANELQLSASDQQIEQ 148
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P+F D +F + + L+R IN + L+R + F G
Sbjct: 149 YIFSMPVFQT-DGRFDSEKYREILSRNNINADSLAAQIRQDLTRAQLGKTFTGTDFALPS 207
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + R + +L+ V A S L +++ ++++ +PE ++SY+
Sbjct: 208 EVKAYAELFMQEREIRTAILDLAEVQAKQTASEEELKAYYDANQNSFISPEKVQVSYV-E 266
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+S +E++A Y++N + Y E + + ++KEA++ LK+G F
Sbjct: 267 MDAASMPPATVSAEEVKAYYDQNLKNYTQAEQKQYSMIQVASEKEANDILNELKQGADFA 326
Query: 298 QLAEEQGKS-LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
LA E+ S G L +KG + + YVI + +I
Sbjct: 327 TLATEKSTDKFSAGQKGLIGWMEAASTPSEIVAAKLTEKGQLSAPVKSQNSYVIFRLDDI 386
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
KP F++V++ I + K ++ + +++ E + M+ + E + +
Sbjct: 387 KPESIKPFEQVEESIKTSLLQDKNIKQFYDLQQKVSEA--ATSDMESLVSVESVSGLKAV 444
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP--LSKDHTVALPDGSYMWVQIKESIPA 474
D+ + + ++ + + + V++ E P
Sbjct: 445 TTDWFDRTNPPAALNFPKVVSEVFSDRLVDKNGSKGINSDVINVEGDRAFVVRVTEYKPE 504
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V ++++ K K E+ + +++L+ E + + G T +
Sbjct: 505 SVEPFDKVKSEIETLVKRQKADAELKATSDKLLAELNAGKGT--EALNAAGVKFSDTQTV 562
Query: 535 NRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKV--GPVQEKD 588
+R+ + I+ P + +YV+ ++ + E
Sbjct: 563 SRLMPQT-----AVINATMEMPQPADGKPSYALARDESDNYVLIQLDKVTLGQPTDDELK 617
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ M+ + ++++ L+ + V
Sbjct: 618 QLTREYQGAMSSAVNEALMLNLRENAKIEV 647
>gi|221067844|ref|ZP_03543949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
testosteroni KF-1]
gi|220712867|gb|EED68235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
testosteroni KF-1]
Length = 632
Score = 204 bits (518), Expect = 3e-50, Method: Composition-based stats.
Identities = 108/646 (16%), Positives = 236/646 (36%), Gaps = 48/646 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IRK S+ +V + +++ F+ G++ F+ S TV V + + N+
Sbjct: 1 MFESIRKHSK-FVMILLFLLIIPSFIFVGVNQNYFTESSQ-TVARVDGHDITQQDWDNAH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E + + ++++ S L+ LV L + L ++ +
Sbjct: 59 RAESDRLRAQ-NPSMDAKLLDSPEARYATLEKLVRDRVLAAAATKMHLTTPDAQLVRTLR 117
Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + + + +G+ + + + + L+ V+G +
Sbjct: 118 EIPAIASLQKPDGSLDAEAYKALVGSQGMTPEGFEANLRRELALNQVLGAVSSTSFTTAA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L QA ++ R + + P+ A L ++E + ++ PE + Y+
Sbjct: 178 QLQQAMDALYQRREIQVARFDASAFAGKVQPTEAELKAFYESHTSQFKQPEAATVEYVQL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ EK I +S D+L+ Y++N + PE R ++ K+ A + K K
Sbjct: 238 DLATVEKSIVLSEDDLRTYYKENAARLAGPEERRASHILINAAKDLPAAEREKAKAKAEQ 297
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + + LG F ++ + + K+GD +
Sbjct: 298 LLAQVRKDPKSFAQVAKANSQDPGSAANGGDLGYFGRDAMVKP--FEEAVFKMKQGDISD 355
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ FG+ I ++ IK +F+E++ + ++ +A K E + + +
Sbjct: 356 VVESDFGFHIIELTGIKQPKVPTFEEMRPKLEADLKQQQAQRKFAEVAEAFSNAVYEQSE 415
Query: 401 M-DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VA 457
++ + K+ V ++ L +F D +K +T V
Sbjct: 416 SLQPVAEKFKLSIQKAENVTREPAPGAQGP----LASKRFLEALFSADSLENKRNTDAVE 471
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
L + + ++ PA + ++EV +K+ + ++AE + + E+
Sbjct: 472 LAPSNLVAGRVLSYAPAHIQSMDEVGAKLKQLYVAHQSAELAKQEGQAKMAEWK------ 525
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFK 575
K A L ++ R ++ + + P + + + Y V K
Sbjct: 526 ---AKPGTAQLPAAVEVGRDQAKD--LPREVLDAALRAPTNALPAWEGVDLGNAGYAVIK 580
Query: 576 VTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
V P Q+ ++ + TQ + + + LK + V +
Sbjct: 581 VNRIAQRPAQDAQVLEQQKAQFTQWASMAEVMAYYDQLKKIFKVQI 626
>gi|50084586|ref|YP_046096.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase)
[Acinetobacter sp. ADP1]
gi|2623969|emb|CAA05330.1| putative peptidyl-prolyl cis-trans isomerase [Acinetobacter sp.
ADP1]
gi|49530562|emb|CAG68274.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
[Acinetobacter sp. ADP1]
Length = 622
Score = 204 bits (518), Expect = 4e-50, Method: Composition-based stats.
Identities = 93/636 (14%), Positives = 210/636 (33%), Gaps = 34/636 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E RK + W+ K+ L++ P + G+ + + +V Q + N K
Sbjct: 1 MESFRKVIKGWLGKVLLILFLTPLALVGIEGYFGGGNKADVAKTVNGQDISKKDLENLTK 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ +++ L+ L++ + L Q E +G+ ++ +A+
Sbjct: 61 TYKDQYLSLAKG--DETLLNQSYIEENALNTLIARSLLLQQAEKLGISLSDAQIEKMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F ++ KFS ++ + L G+ + I + + + S L Q
Sbjct: 119 QPSFQ-ENGKFSETLYSNYLRSVGMTSQALIASLRQDHALKMLTSSVTDTALVSKFDLHQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR-ISYILFDVH 240
E R++ + + +N + ++ K+K+ ++ ++
Sbjct: 178 IAVLQTEQRTIHLASIKLDDYKKNINVTNQEIADYYNKHKNKFKQVASVDVDYIVVSPAQ 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------SLKK 292
++ ELQ Y E R V+ ++ +D Q ++
Sbjct: 238 VSSAPAAVTEAELQQAYNAFVETQKKDAKRLVKHILITADGRSDAEAQKIANDVYAKIQA 297
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVI 350
G F + A++ S + G Y P D K G + + +GY I
Sbjct: 298 GTHFSEAAKQYSDDTSSKNNGGVVDAYQPGIFSKDFDQAVESLKNGQVSKPVKTQYGYHI 357
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE-K 409
V S + K + +++ +K++ + RL E + ++D +++
Sbjct: 358 IEV-ETAQVKLPSLEAEKARLTAEIQKSKSANAYTDTINRLNEMVVSTDALDSVAQELKG 416
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ L V + + + P + LF K+ + + L +G +WV+++
Sbjct: 417 LRVESLNGVTLSTQHPL----LSDPNVKAKLFNDDVKNGDRNASSNIQLANGDTIWVKVR 472
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
A + L V+ K +K ++ ++ + + G
Sbjct: 473 NYHAAGVKPLATATAQVRAKLIEDKAFNAAQAKIQAVLNDFKT--QPADQVVAKSGLKFE 530
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG---LSYVVFKVTNSKVGPV-- 584
+ R ++ + FS + + VV V++
Sbjct: 531 SAGTFTR----SQGLKREIERAAFSLTAPKAGMWSVATAKLPDELVVVGVSDINSKAADA 586
Query: 585 ---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + + + + LD YLKS +
Sbjct: 587 LNPEQLQELGNLYQRFRGQQELDDYTQYLKSHAKIK 622
>gi|89069544|ref|ZP_01156888.1| hypothetical protein OG2516_03173 [Oceanicola granulosus HTCC2516]
gi|89044879|gb|EAR50969.1| hypothetical protein OG2516_03173 [Oceanicola granulosus HTCC2516]
Length = 613
Score = 204 bits (517), Expect = 5e-50, Method: Composition-based stats.
Identities = 122/627 (19%), Positives = 247/627 (39%), Gaps = 27/627 (4%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
+ +++T + L +LF + +G + T+ SVG +++ + +++
Sbjct: 3 KNSAKTVATWVILGLLFFGLIGFGATGL---SGNVRTLGSVGEKEIAIQDYARELNRQIN 59
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ Q+ G + G+D+ +L +L+S TLD ++GL A GRV E+ SP F
Sbjct: 60 QLQQQTGQTLTFSEVEQFGIDRMVLSSLISRRTLDNEAAELGLSAGDGRVAAEVRASPAF 119
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
G D F + + L R G+ E EY + L+R + V + S+ D +
Sbjct: 120 QGLDGSFDREGYKFALDRNGLTEGEYESEIREQLARGLLQRAVVAAIPESDTYADVIAAY 179
Query: 186 YFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
E RS + L+ + +P++A L ++E D + PE + I+Y
Sbjct: 180 LGETRSFVWAELDEDDLAEPIPEPTDAELQAYYEANLDAFTRPETREITYAALTPDMILD 239
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQ 303
+E+ +LQA Y++ + Y PE R VE+L+FP++ A A ++ G+ F +
Sbjct: 240 DVEVDRADLQALYDERIDDYVRPERRLVERLIFPDEDAAAAALARIESGESDFDSEVRAR 299
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
G L+DI LG +++ + A+ GD G + ++ + P+ V
Sbjct: 300 GLDLADIDLGDVAQDRLGAAG---EAVFAARPGDVVGPHPTDLGPALFRMNAVLPAQEVP 356
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
+E + D+ ++ A +V+ + + + +A G +++++S R + L D
Sbjct: 357 LEEAEADLRVELAADVARRRVQSVGEEIADLIAGGATLEDLSERTDLELGTLTYTD---- 412
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
+ P V L DG +++ E LEE
Sbjct: 413 -----DSRDGLAAYAAFRAEAASARPEDFPELVELEDGGIFALRVDEVREPAPIPLEETR 467
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
V W+ + +E + ++A ++ + G+ + + ++R
Sbjct: 468 EAVAAAWREAQRSERLLARAEEMAATIEETGRFTDQMPAP-----IAEIGVDRRAVIGGT 522
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN---- 599
++QVF + E+G V + T + + L +
Sbjct: 523 -PPGFVAQVFEMEEGEARAVETESGAIVVQLRGTRAAYPDNARVAADAATLAERAQGGVV 581
Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+D+ D +++ V + + ++
Sbjct: 582 QDIFDVFTRAVQTSTEVRLDQSAVEAV 608
>gi|296283875|ref|ZP_06861873.1| peptidyl-prolyl isomerase [Citromicrobium bathyomarinum JL354]
Length = 646
Score = 204 bits (517), Expect = 5e-50, Method: Composition-based stats.
Identities = 107/638 (16%), Positives = 243/638 (38%), Gaps = 14/638 (2%)
Query: 1 MLEIIRKASRTWVA----KIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFS 54
M+ R ++ + FLV++ + F G S + +SG+++V VG + V +
Sbjct: 1 MINFFRSFFQSKIGLGLTIGFLVLIAIAFAAGDVGNSGSFGGLSGTNSVAVVGDEDVTTA 60
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
S + Q+ ++ G ++LD L+ + +F + +G+ A
Sbjct: 61 ELRQSADNAFRQV-QQDEPTLSMAEFVEDGGLMQVLDTLLDRVAVSEFGKMLGVRAGENL 119
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
+ EI F G D FS + + + L ++G+ ++ D + L V+ V G +
Sbjct: 120 INSEIRMISAFRGPDGSFSTEAYRAALQQQGLTDQIVRDDLSDGLIAQQVLVPAVFGAKF 179
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
+ ++ + E R ++ DP++ L ++ + ++ PE +++ Y
Sbjct: 180 PDSIVARYATQLREKREGSIALVPAELFAPKDDPTDKQLQTFYNANRTDFMRPERRQVRY 239
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
LF + +E + E++ Y+ N + Y + E RT QL+ P ++ A+ + + G
Sbjct: 240 ALFGADQLADSVEPTAAEIKKRYDDNADLYRASEDRTFTQLIVPTRQAAESFRERVADGA 299
Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
Q+AEE G I + A +G+ P+ GY + +
Sbjct: 300 SLTQIAEEAGLETQQIGPIKREDYAQQANAAVAEAVFSADRGEIAPIARSPLGYHVVRID 359
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
++K + + + +IA+ +R K + E ++ + G S +I+ +
Sbjct: 360 DVKTIPARTLAQARDEIADALRADKQRRALTELASDIDARVTSGESFADIAEALDLDIQT 419
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ G+ G++ P Q L + + ++ + E PA
Sbjct: 420 TRPLLADGQVYGGQQGETAPEVVQPLIQTVFQMREGQPQIAEVETGETFALYEASEISPA 479
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI--GKNLGASLLTTN 532
L+E+ V W + A+ + +++++ + K+GK+ + +
Sbjct: 480 AVPPLKEIRDAVTARWTMAEGAKAAKAASDRIL-KRVKDGKSLAEAIRAEETRLPPPQPL 538
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF-- 590
+ R IS +F+ K + + ++ G V + D
Sbjct: 539 SLTREQMMQMQRPNPPISLMFAMSAGTAKRLEAPRNAGFFLVQLDEITAGKVAKDDPLMG 598
Query: 591 --ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
Q+++++ D + ++++ + + + I+
Sbjct: 599 EARRGYGQLLSREYGDQLRNAIRTEVGIERNADAIETV 636
>gi|254428426|ref|ZP_05042133.1| PPIC-type PPIASE domain protein [Alcanivorax sp. DG881]
gi|196194595|gb|EDX89554.1| PPIC-type PPIASE domain protein [Alcanivorax sp. DG881]
Length = 632
Score = 204 bits (517), Expect = 5e-50, Method: Composition-based stats.
Identities = 111/638 (17%), Positives = 234/638 (36%), Gaps = 39/638 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ K+ L + +PF+I G S V V K+ S ++ M+ ++
Sbjct: 1 MGKVLLAAIILPFVISGFYGYFVGGSTGDVVAEVEGSKITRSVVNQRVERVRNMLREQS- 59
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+N S + +LD +V+ + E + +V +I + PLF +D KF
Sbjct: 60 PNMNPALLDSFVRPEMVLDGIVNEQLILAAAEQSSMVFSEQQVAADIYKVPLFQ-EDGKF 118
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
S F L G+N + YI + + + F+ L++ +R ++R +
Sbjct: 119 SEQRFERELRARGMNPQSYIQGLRQDMIKEQFRAGFMQTDFSLPSELNEQRRLGEQSRDI 178
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
Y L+ + S+ + ++++ + + PE ++SY+ + ++ +++++
Sbjct: 179 RYAQLDINSLRKQFSVSDEEVKAFYDENQGEFMRPEEFKVSYVELSADKYADQVSVTDED 238
Query: 253 LQAEYEKNKEKYFS----PEIRTVEQLVFPNQKEA---------DEAFQSLKKGKKFIQL 299
++AEY+ K R V ++ + EA +++ G+ F
Sbjct: 239 VKAEYDVRKSIMEEAGAGDAPRQVSHILIEVNDDRDLEQAKVRAREAAKAIAGGESFADA 298
Query: 300 AEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
A + S LG SK +P+ + D+I LA PV+ + ++I
Sbjct: 299 AAQYSDDSGSAQSGGDLGVVSKGALPE-EMEDAIADLASGTVSAPVVTDAGVHLIKVTQE 357
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
S E+ I ++ +A + +D +LEE L + + + +
Sbjct: 358 ETARALPSLAELSDQIRADLKKARAEALLNDDVAKLEELLYEHADLQSPAEQVGTSVVTT 417
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
VD A ++P +Q L ++ + D + + Y+ V+I E+
Sbjct: 418 DWVDLAAA----DAPLSLPQVQQALNSDQVREQGHNSD-LIEVDPTRYIAVRIAENKSPE 472
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
EEV +++ K ++V N+ + +G + + G + +
Sbjct: 473 PMPFEEVSFAIRERLKGEHAMDKVQQL-NEDAQKSIDDGADLAAVADLFGVEVEEQEGLQ 531
Query: 536 RMDNENKFFGYDGISQVFSGP---VEMVKCFPIE--NGLSYVVFKVTNSKVGPVQEKDKF 590
R E + ++ F P + S V ++VT G +
Sbjct: 532 RGGAEPSM---EVVNGAFGAPRFEEGEASPVALTRLGDGSVVAYQVTRVADGNAEPLSDA 588
Query: 591 ISY-----LTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
L + + V+A L+ + V +H + +
Sbjct: 589 QQQAALVELANVEGQRNFRQVVALLRDEGDVELHPSRL 626
>gi|53805225|ref|YP_113052.1| peptidyl-prolyl cis-trans isomerse D [Methylococcus capsulatus str.
Bath]
gi|53758986|gb|AAU93277.1| peptidyl-prolyl cis-trans isomerse D [Methylococcus capsulatus str.
Bath]
Length = 605
Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats.
Identities = 96/625 (15%), Positives = 228/625 (36%), Gaps = 44/625 (7%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
L+++ +PF WG+++ F + V VG + + +++Q+L + V
Sbjct: 2 LILVGIPFAFWGINNY-FDSGKEAPVAVVGDRDFFERDVVQAYQQDLANL-------VGL 53
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
L ++ L+ LV + Q GL V I P F D KF D +
Sbjct: 54 GDVDEKHLKRQALERLVRDELISQAAAGEGLAVPDSAVRAFIQTLPYFQT-DGKFDKDKY 112
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
L+ +G + +++ + L + ++ R + R ++++ +
Sbjct: 113 NVMLSAQGTSSPVFVEQVKRALLMEQFQRGITDTAFVTRQQVEAFFRLKNQEREIEFVTV 172
Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
A + S + + +++ + D +++PE ++Y+L + + K+++ + +EL+ Y
Sbjct: 173 PLAK--ADEEVSESSIDEYYRSHPDEFQSPETVSVNYLLLSLDDVAKEVKPTEEELRNFY 230
Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFIQLAEE---- 302
E+ K + + E R V ++ E + L KG+ F +LA+E
Sbjct: 231 EEQKAGFTTEERRKVSHILVTVDPAKPEDEAAALAKIRQIRERLLKGEDFAKLAKETSDD 290
Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
+ + LG +K + + + + +G+ + + SFGY + V+ + P+ T
Sbjct: 291 RVSAEKGGDLGVVTKGGM-EPNFEKAAL-ALSQGEVSEPVRTSFGYHLIKVTELTPATTK 348
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDFA 421
+++VK ++A R A + + ++L E +++ ++ + +
Sbjct: 349 PYEQVKDEVAAGFRRNAAENRFYDLGQKLTEFAFEHPDTLEPAAQALGLKVEETGPFTRE 408
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
+ + + V + + +++KE PA L E
Sbjct: 409 SGEGISADEGV------RKAAFSEEVLGGKNSDVVEVGADKVVVLRLKEHRPAETMSLAE 462
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
V + + T ++ + A + E EGK + K + + R +
Sbjct: 463 VRERIVSLLRDRATRQKTEALAEAALKEM-GEGKTLGGVAKAHNWKVTGPLTVRR---DA 518
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQ 596
++ F + ++ K G ++ + L +
Sbjct: 519 SGVAAAVVNAAFGTRELNRPIRVALENGDQAILRIAAIKEGEAAPEAEKDMETVRQSLAR 578
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDN 621
+ + + +A ++ V + +
Sbjct: 579 VAGQREFAAFMAEMRRSADVYIKPD 603
>gi|294011597|ref|YP_003545057.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium japonicum UT26S]
gi|292674927|dbj|BAI96445.1| peptidyl-prolyl cis-trans isomerase D [Sphingobium japonicum UT26S]
Length = 649
Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats.
Identities = 127/651 (19%), Positives = 251/651 (38%), Gaps = 22/651 (3%)
Query: 1 MLEIIRKASRTWV----AKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFS 54
ML + R+ R+ + A IFL ++ F++ ++ F G T G ++ +
Sbjct: 1 MLSVFRRFIRSKLGAFAALIFLGIIAAAFIMGDITSGNFGSSMGGGETAARAGGSRLTMT 60
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ ++ + + + G ++ D LV+ TL ++ D +
Sbjct: 61 ELQDRVQRVFENARR-SNPGLQIGDFLAQGGAAQVYDQLVASMTLKEYASDQKVHISKRL 119
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
V +IA+ P F FS + F L RE I E+ D ++ + ++ G++
Sbjct: 120 VDAQIAQIPAFQDAAGNFSQENFRQLLLRERITEQALRDDISREILERQMLAPLGLGVKL 179
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
++ ++ E R V+ IADP++A L ++ K Y PE +RI Y
Sbjct: 180 TDSMVLPYASLLLEARQGTIAVIPATAFKDIADPTDAQLDDFYRKNAARYTIPEQRRIRY 239
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
+ D + + ++ E+ + Y +NK Y + E R+ EQL+ P Q A +K GK
Sbjct: 240 AVIDAERFAQAAQPTDAEIASYYNQNKAAYAAKESRSFEQLILPTQAAAKAIADQVKGGK 299
Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A+ G S+S++ S + + AK+G+ + GS G+V+ V+
Sbjct: 300 SLAAAAQSAGLSVSELKDQSREALASAASAAVANAGFAAKQGELAGPLRGSLGWVLLRVT 359
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
++ + + V+ +I +R K + + ++E+ +A G S DE+ + +
Sbjct: 360 AVRTTPARALAAVRDEIVAALRAQKEKRLLNDFTGKIEDQIANGGSFDEVVKDNGLKLET 419
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
P + +GK V+ + LL VFG + + Y + A
Sbjct: 420 TPFLVSSGKQVEDAAYQVPADVKPLLAPVFGMSQDDDAQLVPIVAEKRYALAAPGDIQAA 479
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
L +V V +K + E+ + A Q+ + +K G + + G +L +
Sbjct: 480 APPPLAKVKPLVAMQYKLAQGNEKAKALAEQIRAKVAK-GMKLDEAVASAGIALPRPQVV 538
Query: 535 NRMDNE---NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
+ + ++ +F+ VK P Y V ++ K G +
Sbjct: 539 GGRRADIMRDGQRPPAEVAMLFTMATNSVKTLPAGQDRGYFVVQLNGIKRGDAGSDKALV 598
Query: 592 SYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNL---IQRYL----DGEK 631
+ + + ++ ++ + V N +QR L G +
Sbjct: 599 NQVRDQLSEVVGQEYGQQFERAVEKELGVKRSPNAVASVQRALASANGGGQ 649
>gi|85374123|ref|YP_458185.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
gi|84787206|gb|ABC63388.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
Length = 647
Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats.
Identities = 111/640 (17%), Positives = 233/640 (36%), Gaps = 17/640 (2%)
Query: 1 MLEIIRKASRTWVAKIF----LVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFS 54
M+ R+ ++ + L ++ + F +S VSG V VG QKV +
Sbjct: 1 MINSFRRFFQSKIGIGIFVGFLALIAIAFAGADVSSTGTFGGVSGGDRVAVVGEQKVGTA 60
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ L + Q + GL +++++ L+ + +F G+ A
Sbjct: 61 ELSRAASNALDQLRQNDPTLSMPAFIDQGGL-ERVVETLLDRIAIAEFGRKYGMRAGDNL 119
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
V EI R P+F G D F + + + +AR+G+ + D L V+ G
Sbjct: 120 VNSEIRRIPVFRGADGNFDEETYRAAIARQGLTDAVVRDDLGDGLIAQQVLVPGSFGATI 179
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
+ L + + E R ++ + +P++A + ++ K +Y PE + I Y
Sbjct: 180 PDKLASRYAALFKERRRGAIALIPSTSFAPDGEPTDAQVQAYYNANKGDYIRPERRVIRY 239
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
F + E+ YE++ +Y + E RT+ QL+ P Q+ A + G
Sbjct: 240 ATFGESAVADVGTPTAAEIANRYEQDASRYAASEERTLTQLIVPTQQAAQTFRDRVAGGA 299
Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
+A E G I S+ + +G PV G+ + V
Sbjct: 300 SLETVAREAGLEAQQIGPIDRSEYGAQASAQVAQAVFGTARGQVAPVARSGLGWHVVRVD 359
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
++ S + +++I + + + E + +E+ A G S+ +++
Sbjct: 360 DVNRIEGRSLAQAREEIVSTLTQERRRRAFNELAESIEDRFADGESLADVAAEVGAEVQT 419
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ AG G + P + + + T A+P ++M + + P+
Sbjct: 420 TRPLTGAGIVY-GTQNEQAPEILRRALATAFQMEEGEPQLTEAVPGETFMLFEASDITPS 478
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
L E+ V DWK + + A VL+ +G++ + AS+ +Q+
Sbjct: 479 APAPLAEIRDTVVADWKRA-EGAKRARAAADRVLKRLGDGQSLAAAVRAEDASIPPIDQV 537
Query: 535 NRMDNENKFFG----YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQE 586
N + G ++ +FS K + + + + + + G
Sbjct: 538 NLTREQLVQRGERGVPAPLALLFSMAQGTEKKLEAPRNIGWFIVDLDSIEAGVVGRDDPL 597
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ S Q ++ + + +++ ++ ++ I+
Sbjct: 598 FRQAKSQFGQTFGQEYGEQLRLAIRNDVTIERNEAAIEAV 637
>gi|56416723|ref|YP_153797.1| hypothetical protein AM516 [Anaplasma marginale str. St. Maries]
gi|222475088|ref|YP_002563503.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
str. Florida]
gi|56387955|gb|AAV86542.1| hypothetical protein AM516 [Anaplasma marginale str. St. Maries]
gi|222419224|gb|ACM49247.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
str. Florida]
Length = 670
Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats.
Identities = 110/640 (17%), Positives = 234/640 (36%), Gaps = 29/640 (4%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+R R L + F+ + V VG + + +++
Sbjct: 39 AMR--LRNVFVGAVLAAVLCAFVFVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYR 96
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
EL I + ++ + + G+ + L +V L++F +++ L + + I
Sbjct: 97 GELSYIESLVHQKLSEDDIKRFGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGD 156
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-----MRPSN 176
P+F K K F LA G+ E YI L + + +
Sbjct: 157 MPMFQDKSGKLDEQRFKDLLADAGMTEASYIGKVRDSLPAFVLSECIFPRSGEVYSQYYD 216
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
R ++R+VD + ++ V + P+++ L + + N + S
Sbjct: 217 GFAQDVLRGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEY 276
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
V E + E++ E E + + R V LVFP++ EA A++++K+GK F
Sbjct: 277 MIVSEDDALDEVTAS--NDEVESEIKNSELHDQRDVLNLVFPSESEASAAYKAIKEGKAF 334
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+ ++ G ++ +++L + +KE +P +G+ + V G+ + + +
Sbjct: 335 EAVVKDLGTTVEEVTLRNVTKELLPIEVRN--TVFDLNEGEVSGVFRSVVGWHVMKILSK 392
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSID 414
P +++K+ +A ++ KA E ++ E ++ G + K
Sbjct: 393 HPISAKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKPAIGA 452
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQL----LFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
L D G+D GK + K +Y V +
Sbjct: 453 LKDFDSNGQDSTGKSHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGNAYFSVIVTG 512
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
P+R R +E + + WK E+ A+ L + G +G
Sbjct: 513 VTPSRTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKLKAGENP----GSAVGIVTKK 568
Query: 531 TNQINRMDNE--NKFFGYDGISQVFSGPVEMVKCFPIENGLS-YVVFKVTNSKVG---PV 584
I+R++ + + + D + QVF + V I+ G + + + + K
Sbjct: 569 NENISRVNRKKGSSNYPEDLVDQVFEMRIGDVGEGVIDQGANKIFIATLKDIKTPGQVNE 628
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+E +F ++ T + ++++L ++Y V ++ L++
Sbjct: 629 KELKEFQAHFTSSAISSIRRQLLSHLTNKYGVKINKKLLE 668
>gi|307822662|ref|ZP_07652893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
tundripaludum SV96]
gi|307736266|gb|EFO07112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
tundripaludum SV96]
Length = 620
Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats.
Identities = 106/640 (16%), Positives = 235/640 (36%), Gaps = 46/640 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML IR+ ++ A L+++ VPF +WG+ + L + V SVG + ++
Sbjct: 1 MLTKIREKAQGAFAWGILIIICVPFALWGIQNYL-DTGEEAPVASVGDKDFFQRDVNKAY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q + L + L+ L+ L Q++ GL I
Sbjct: 60 EQYSQNLQGMT--------IDEQTLKAQALEKLIKDEVLLQYVHANGLVTTDDAAREFIQ 111
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F D KF + + L + ++ E+++ L + + ++
Sbjct: 112 SLPYFQV-DGKFDDKRYKTMLNLQKMSSGEFVNRIKNALIMEQFQRSIIDSSFATKYDVE 170
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R VDY + P+ + ++++++D Y+ PE + YI +
Sbjct: 171 SFFKIQNQQRDVDY--VTVAVQKLAEQPAEEEIAAYYQQHQDLYQTPEQVSVEYIELSLE 228
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ K I +++D+L+A YE+ K++Y +PE R + ++F + DE K K +LA
Sbjct: 229 DIAKTIAVTDDKLKAFYEEQKDQYTTPERRKISHILFAINDKVDEKTALEKALKAQKELA 288
Query: 301 E------------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
++ + + LG F+ + + K G+ + + +FGY
Sbjct: 289 NKDFAAVAAEVSDDKLTAKTGGDLGLFNAGVMEKSFEDAAS--ALKLGEVSNPVKSAFGY 346
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRR 407
+ V+ + P F+ VK ++ + +A E + L E ++ ++
Sbjct: 347 HLIKVTELVPGEIKPFESVKNEVTKAYQKAQAENAFYEAGETLTEMSYENPDNLKTVADA 406
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ L K + ++ + + + L + ++
Sbjct: 407 LGVTIKKSALFTK------DKGDSIAADEKIRNAAFTEEVLQGNNSTPIELGTDRLVVLR 460
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ E PA R+L +V D+ + K ++ + ++ + G++ + +
Sbjct: 461 MLEHKPAAARELSDVKKDIVAVLLSDKAKQQAIETSKKIKTRL-QAGESIQTVAAENKLQ 519
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIEN--GLSYVVFKVTNSKVG- 582
+ T + R + +F PV I VV ++ K G
Sbjct: 520 VKTVAGLTRSKED---VPLPLSQAIFKAAKPVGGKPTVFIAELPAGEQVVVSLSKVKEGV 576
Query: 583 -PVQEKDKFI---SYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+K + + + + +++I L+++ ++V
Sbjct: 577 MTEDDKKQMELATKNIAKAFGQTEFNALINSLQAEADISV 616
>gi|326316510|ref|YP_004234182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323373346|gb|ADX45615.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 642
Score = 203 bits (516), Expect = 6e-50, Method: Composition-based stats.
Identities = 101/645 (15%), Positives = 228/645 (35%), Gaps = 47/645 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IRK S+ V + +++ F++ G+ F+ S S+ V V + + N+
Sbjct: 1 MFESIRKHSK-VVMIVLFLLIIPSFVLVGIDRNYFT-SKSAVVARVDGHDITQDDWDNAH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E I + V++ S L+ LV + + L ++ +
Sbjct: 59 RMETDRIRAQS-PSVDARLLDSPRARYATLERLVRDRVMQAAAVKMHLVTSDAQLARTLQ 117
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + + + +G+ + + ++ + LS + V+G +G +
Sbjct: 118 GIPAIAALKRPDGSLDAEAYRALVGSQGLTPEGFENNVRRELSLSQVMGGVMGSAFAAQE 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
A ++ R + + + A P++ L +++ ++ +R PE+ + Y++
Sbjct: 178 PARLALDSLYQRREIRVARFDAKDFAAKVTPTDDELQAYYKAHEAQFRQPEHADVQYVVL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
D+ I +S D+L++ Y++N E+ E R ++ K+A A
Sbjct: 238 DLDAVRASITLSEDDLRSYYKENLERLAGKEERRASHILINAPKDAPAADREKAKARAQA 297
Query: 287 --FQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
Q K F ++A + + S LG F + + + KKGD +
Sbjct: 298 LLEQVRKAPNTFAEVARKNSQDSGSAPSGGDLGFFKRGDMVKPFEDAAFSM--KKGDISD 355
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
++ +GY I ++++K +F+EV+ + + + +A K E +
Sbjct: 356 LVESEYGYHIIQLNDVKTPKQPTFEEVRAKLETEAKQQQAQRKFAELAEVFSNTVYEQAD 415
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVA 457
S+ ++ + K+ V + + L +F D + +
Sbjct: 416 SLQPVADKLKLKVQTASDVTRTPRPGAQGP----LANGRFLEALFSSDSVQNKRNTEAIE 471
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ + +I PA ++V T V++ + ++AE + V + +
Sbjct: 472 TAPSTLVAGRIAAYTPASTPSFDQVKTRVRELFVAERSAELARKEGEAKVAAWKAAPASA 531
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFK 575
+G + ++R E + + + + F Y V K
Sbjct: 532 TGLGAPV--------TVSRDKPEGQ--PRPVVDAALQVNADTLPTFAGTPLGAQGYAVIK 581
Query: 576 VTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V + + + + + LK ++ V
Sbjct: 582 VDRIVPRDPADPAVARQQQQQYAEAEAQAEAMAYYELLKDRFKVQ 626
>gi|170702053|ref|ZP_02892969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria IOP40-10]
gi|170133039|gb|EDT01451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria IOP40-10]
Length = 644
Score = 203 bits (515), Expect = 7e-50, Method: Composition-based stats.
Identities = 97/644 (15%), Positives = 223/644 (34%), Gaps = 39/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + L+ +G+ ++Y + L+ + V
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKG 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R V +VL A P++A LT +++ +K ++ PE I Y+++
Sbjct: 180 PAQRLSELAAQQREVQALVLKTGDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ ++ +++ Y+ N + S V + +A A ++ K K
Sbjct: 240 SPAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKDSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGDVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G+ I + +KPS F +VK IA Q++ A++ ++ + +
Sbjct: 360 VVQSDLGFHILKATEVKPSVVKPFADVKDHIAVQLKQQYAAKAFTDNAEGFTSTVYEKAK 419
Query: 401 M-DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + K+ ++ + P +F + + +
Sbjct: 420 TLQPAADKYKLTIQTATVMPTPNPQLPPTSPLNNPKFLAAVFASDSVKS-RNNTQAIDVG 478
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + + ++ + PA L+ + V++ + E + E K
Sbjct: 479 NNTLISARVTDYKPAAVPALDTIKEAVRQKVVAEQATELAKKDGAAKLAELQK------- 531
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
+++RM +++ +S V+ + + + + Y +++V
Sbjct: 532 --SKSADGFTPVQKVSRM--QSQGLTPAALSAVYKVDAKTLPAYVGVDLGADGYAIYRVN 587
Query: 578 NSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G Q+ + Q+ + ++ +A L+ + V +
Sbjct: 588 AVIPGTAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKL 631
>gi|89901031|ref|YP_523502.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
ferrireducens T118]
gi|89345768|gb|ABD69971.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
ferrireducens T118]
Length = 640
Score = 203 bits (515), Expect = 7e-50, Method: Composition-based stats.
Identities = 101/644 (15%), Positives = 218/644 (33%), Gaps = 43/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + +RK ++ + + +++ F+++G+ S S V VG + +
Sbjct: 1 MFDFVRKHTK-IMMAVMFLLIIPSFVLFGIDGYNRSRDAGSVVARVGSHDITQGEWDAVH 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
K E + + ++++ S L+ LV L Q + L R+ +
Sbjct: 60 KSEADRLRASM-PNLDAKLLDSPQARYATLERLVRDRVLAQAADKFKLTTSDARLARNLH 118
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+P D K D + + +G+ + + + LS V +
Sbjct: 119 ENPSIAALRQPDGKLDMDRYRQLVGSQGLTPEGFEARVRQDLSVRQVEAGVGETGFAAAS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ D A +FE R V + P++A L +++ + +++PE+ I Y++
Sbjct: 179 VADVALNAFFEKREVQIASFTAADFASKVSPTDAELNAFYKANQALFQSPEHASIEYVVL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
D+ +K I IS ++++ YE+N E+ E R ++ K+A A
Sbjct: 239 DMDSVKKSIVISEADMKSYYEQNAERLSGKEERRASHILITAAKDAPAADRQKAKARADE 298
Query: 287 --FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ F +A++ + + L F++ + + KKGD +
Sbjct: 299 LLKTVRQSPDSFADVAKKNSQDTGSAANGGDLDFFTRGAMVKP--FEDAVFAMKKGDISE 356
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
V+ FGY I +++IK SF+E++ I ++ +A + E +
Sbjct: 357 VVESDFGYHIIKLTDIKKPVQRSFEELRAGIEADLKTQQAQARFAETAEAFTNGVYEQSD 416
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ ++ + K+ V + G A K + +
Sbjct: 417 SLKPVADKLKLEIKTATNVLR--QPAAGTTGALSNAKFLAAIFNTDSIEKKRNTEAMETA 474
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
++ + PAR +V V + K AE + + +L +
Sbjct: 475 PNQLTAGRVTQYTPARTLPFADVSRVVHERVVADKAAELAKKEGQEKLLAW--------- 525
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
K A+ + I ++ + ++ + F + Y V +V
Sbjct: 526 --KASPAAAVMPAPIVVSRDQAQNVPPQVLTAALRADTAALPAFVGVDLGAKGYSVVRVN 583
Query: 578 NSKV---GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + Q + + LK ++ +
Sbjct: 584 KIVPRQAPAEAAAKQDRAQYAQWWSGAETQAYSDLLKERFKAQI 627
>gi|78485440|ref|YP_391365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
crunogena XCL-2]
gi|78363726|gb|ABB41691.1| peptidyl-prolyl cis-trans isomerase D [Thiomicrospira crunogena
XCL-2]
Length = 638
Score = 203 bits (514), Expect = 8e-50, Method: Composition-based stats.
Identities = 106/643 (16%), Positives = 248/643 (38%), Gaps = 35/643 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++ W+A + + ++ + F ++G+ V V + V + F+ +
Sbjct: 1 MLQSIRNHAQGWIAWVIVGLIILTFALFGIDQYA-KGDKIIVVAEVNGEDVTANEFLTLY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + G + + + + L +++D L+ + Q+ + + + ++ I
Sbjct: 60 SRQQARLKNQFGEMYD-QVVKDQQLRDEVMDALIESEVVRQWADSHNMMISNQQLSATIE 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ +F KD +F ++ L + G+N + + L + + ++ L
Sbjct: 119 SAEVFQ-KDGQFDQQLYQDILLQNGLNVARFEYEQRQFLIENQNRQLTMASAITNDTQLA 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q F+ R V+Y+ ++ R A ++ + ++ K+K+++ PE +SY+L
Sbjct: 178 QLAALQFQQRKVNYLRVDQRPFMQEAQITDDEIQTYYNKHKEDFITPEQVVLSYVLLSKK 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ K+ + + L+ Y+ NK+++ PE R ++ E+ +A + +LA
Sbjct: 238 DLADKVSVDDAILKRFYQDNKDQFTQPEKRQASHILVKVDAESQDAEAQKTIKEIQAKLA 297
Query: 301 -------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
++ G + LG F + + D K + + + FG
Sbjct: 298 DGEDFAALAKTYSDDPGSANMGGDLGLFQQGMMVPA--FDKAVFSMKLNEISDPVKTEFG 355
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y + ++ I+P +F EVK ++ R +A ++ ++ ++L D +
Sbjct: 356 YHLIKLTKIQPKKMQAFNEVKAEVETLYRRQQADKQYFDELEQLN--TIAYEQADSLIPA 413
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
V + + D + E+ + F K L+ + + + V+
Sbjct: 414 ADAVGLKIETTDPFSRVGGDDEITSNGKVITAAFSEEVKKSGLN-SSAIEISPDVSVVVR 472
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+K+ I + + L +V D++K K + + A L + K + D+ K G
Sbjct: 473 VKKVIDEKQQSLADVKVDIEKILKREAGVKASAELAKTLREKLLKGEQKMADL-KKDGVE 531
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEM-----VKCFPIENGLSYVVFKVTNSK-- 580
+ R + +F P + + G S VV +V++ K
Sbjct: 532 YSNVGWLERENRR---VLPQLTQAIFKAPKPKEGQPTYTTYALPTGDS-VVIEVSDVKEG 587
Query: 581 --VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ + + L Q+ +D+ I + + + +N
Sbjct: 588 NLPDDQSQLAQMKAALVQLAGVSEVDARIKAMVAAADIERKEN 630
>gi|171322244|ref|ZP_02911086.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria MEX-5]
gi|171092428|gb|EDT37778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria MEX-5]
Length = 644
Score = 203 bits (514), Expect = 9e-50, Method: Composition-based stats.
Identities = 96/644 (14%), Positives = 222/644 (34%), Gaps = 39/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V ++ K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAINGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + L+ +G+ ++Y + L+ + V
Sbjct: 120 NDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKG 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R V +VL A P++A LT +++ +K ++ PE I Y+++
Sbjct: 180 PAQRLSELAAQQREVQALVLTTSDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ ++ +++ Y+ N + S V + +A A ++ K K
Sbjct: 240 SPAAAGASAQPTDADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGDVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G+ I + +KPS F +VK IA Q++ A+ ++ + +
Sbjct: 360 VVQSDLGFHILKATEVKPSLVKPFADVKDQIAVQLKQQYAATAFSDNAEGFTSTVYEKAK 419
Query: 401 M-DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + K+ ++ + P +F + + +
Sbjct: 420 TLQPAADKYKLAIQTATVMPTPNPQLPPTSPLNNPKFLAAVFASDSVKS-RNNTQAIDVG 478
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + + ++ + PA L+ + V++ + AE + E K
Sbjct: 479 NNTLISARVTDYKPAAVPALDTIKDAVRQKVVAEQAAELAKKDGAAKLAELQK------- 531
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
+++RM +++ +S V+ + + + + Y +++V
Sbjct: 532 --SKSADGFTPVQKVSRM--QSQGLTPAALSAVYKVDAKTLPAYVGVDLGADGYAIYRVN 587
Query: 578 NSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G Q+ + Q+ + ++ + L+ + V +
Sbjct: 588 AVIPGTAVDPQQLAAAQQQMAQVEAQSEGEAYLTALRDRSKVKL 631
>gi|28198390|ref|NP_778704.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
gi|182681032|ref|YP_001829192.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
M23]
gi|28056460|gb|AAO28353.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
gi|182631142|gb|ACB91918.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
M23]
gi|307579500|gb|ADN63469.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 655
Score = 203 bits (514), Expect = 1e-49, Method: Composition-based stats.
Identities = 106/670 (15%), Positives = 228/670 (34%), Gaps = 62/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK---------- 50
ML+ +R+ + W+A + +L +PFL + V G V +
Sbjct: 1 MLQKLREKTSGWIATAIIGLLVIPFLFV-IDVRYIGVGGKDDVAQLQASPTWWKSAPAFW 59
Query: 51 ----------VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ F + + Q + G ++ ++ +K+LD L+ +
Sbjct: 60 PISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLSNKRKLLDQLIEEHVMR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN--EKEYIDHYTKM 158
E G+ V IA F K KF+ D + LA+E + Y + M
Sbjct: 120 LVAEGAGVVISDEAVRTIIANDQRFQVKG-KFNQDRYRLLLAQEPTMRTPQMYESYVRSM 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + + N L++ + R+ + + L + A+ S+ + +W+
Sbjct: 179 MQLSMIPSAIFDSGFVPNTELERILALLGQTRNAELVTLPALKLDT-AEISDMQIKEWYA 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
++D++R PE Y+ + S L+ Y+ + E R ++
Sbjct: 238 VHRDDFRQPETLSFEYVDL-DAAHLPRPTPSEAMLRKRYDAQQRGEAQNEQRKAAHILIT 296
Query: 279 NQKEADEAF-----------QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323
+A ++ K G F LA ++ G + LG + +
Sbjct: 297 AGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGMMVKP 356
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K G+ I FG + + IK + + F+ V+ +A + +
Sbjct: 357 --FEDALFAMKVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQLAAEQTKEDIDKA 414
Query: 384 VKEDYKRLEEFLALGTSMDEISRR-EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + L + + + L + +AA P +++LF
Sbjct: 415 FNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSR----RDAVGIAANPAVQRVLFN 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ D + + + +++ + L++V V + + ++ +S
Sbjct: 471 HDFIQEGKVSD-PIQINPNHSVVLRVIAHTTEQQLPLDKVREQVVAAVRADRAEKDEASA 529
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A+ LV K G+ ++ K + + R F +FS +
Sbjct: 530 ADALVARLQK-GETLEEVAKAEKLQITPLTGLQRTAQVPAF---AATRAIFSALSPVAGK 585
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ + Y VF VT G P ++K L Q+ + + + ++ +
Sbjct: 586 PTVGKVRLDDGRYAVFTVTRVIPGDLTKLPEEQKAMLRQQLDQIEGTLAVHAYVDMMRKR 645
Query: 614 YSVTVHDNLI 623
+ VT+H + +
Sbjct: 646 FKVTIHKSQL 655
>gi|313672156|ref|YP_004050267.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312938912|gb|ADR18104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 623
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 110/647 (17%), Positives = 238/647 (36%), Gaps = 47/647 (7%)
Query: 1 MLEIIRKASR--TWVAKIFLV-VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML R + + I + + FL+WG+ + + + + V F+ +
Sbjct: 1 MLRHFRNQRKILSIFLWIVIASFIGTIFLVWGVGG---KGNQKTYALKIDDHVVSFNEYK 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+++ Q G ++ + L K++++ ++S L + L V
Sbjct: 58 TTYENISNTYRQLFGANIDQKM-----LSKQVIEEIISKYLLLDEANRLKLPVTDAEVLA 112
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI + P F + +F + ++ L I + + + L + G+ + ++
Sbjct: 113 EIKKVPAFQV-NGQFDKNRYLEVLRLNQITPETFENDIRVNLLLNKMKGVIATSVYVNDQ 171
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R + + YI ++ + L +++ + K+ + P ++ Y+ F
Sbjct: 172 EILKEYRMRNKAVEISYIKVSPEDFEKDVKVDDKSLEKYYLENKNEFLEPTKAKLKYVEF 231
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL------------VFPNQKEADE 285
+ IS ELQ+ Y KNKE++ E + V K+A+E
Sbjct: 232 APDNVKIDDNISEQELQSYYLKNKEQFKQDEQIKARHILIKIDNFQDNVSVEKALKKAEE 291
Query: 286 AFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
++ K G KF +LA++ + LG + + D++ K+G+ + +
Sbjct: 292 IYKKAKSGAKFEELAKQYSDDISKNNGGDLGFVKRGMMIK-EFEDAL-FSLKEGEISKPV 349
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
SFGY I P +F EVK I + + K + K+ + + + ++
Sbjct: 350 KTSFGYHIIKNEKYLPKKEYTFAEVKDQIRSTILKDKIMSQFKQSVQAKYKEIQSFGNLS 409
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ S+++ D+ + V+ + E ++ ++ L +G
Sbjct: 410 GYIVK-NPKSLEIKETDYISEGVRDTFIPEDIKNEL-------LKLDKTELSSLYLINGK 461
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
Y +I + I LE++ V K + + + KA++ + N + K
Sbjct: 462 YYLFEIADKITPTVPPLEKIKEKVIKSYVRKQASIIAKQKADEAAGK-----SNINEAAK 516
Query: 523 NLGASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
L + R+D +F+ + I++G SY V V N
Sbjct: 517 FLNLAPQDVAAFKRIDPIPNIGVNSTMTEAIFTTKAPAMVKSSIQHGSSYYVIYVKNFLP 576
Query: 582 GP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
++++ YL + + +S I LK + + NL++
Sbjct: 577 ASDDKLPEQRNTIAQYLINLKQTEAYNSYIEKLKKDARIDISPNLLE 623
>gi|71276515|ref|ZP_00652790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
Dixon]
gi|71901997|ref|ZP_00684044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
Ann-1]
gi|170729736|ref|YP_001775169.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
gi|71162692|gb|EAO12419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
Dixon]
gi|71728242|gb|EAO30426.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
Ann-1]
gi|167964529|gb|ACA11539.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
Length = 655
Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats.
Identities = 106/670 (15%), Positives = 227/670 (33%), Gaps = 62/670 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK---------- 50
ML+ +R+ + W+A + +L +PFL + G V +
Sbjct: 1 MLQKLREKTSGWIATAIIGLLVIPFLFV-IDVRYIGGGGKDDVAQLQASPTWWKSAPAFW 59
Query: 51 ----------VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ F + + Q + G ++ ++ K+LD L+ +
Sbjct: 60 PISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLNNKLKLLDQLIEEHVMR 119
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN--EKEYIDHYTKM 158
E G+ V IA F K KF+ D + LA+E + Y ++ M
Sbjct: 120 LVAEGAGVVISDDAVRSIIANDQRFQVKG-KFNQDRYRLLLAQEPTMRTPQMYENYVRSM 178
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + + N L++ + R+ + + L + A+ SN + +W+
Sbjct: 179 MQLSMIPSTIFDSGFVPNTELERILALLGQTRNAELVTLPALKLDM-AEISNMQIKEWYA 237
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
++D++R PE Y+ + S L+ Y+ + E R ++
Sbjct: 238 AHRDDFRQPETLSFEYVDL-DAAHLPRPTPSEAVLRKRYDAQQRGEAQNEQRKAAHILIT 296
Query: 279 NQKEADEAF-----------QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDV 323
+A ++ K G F LA ++ G + LG + +
Sbjct: 297 AGADAASQKVAEAKAAKLVEEARKPGADFAALARINSQDPGSKDAGGDLGWVQRGMMVKP 356
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ K G+ I FG + + IK + + F+ V+ +A + ++
Sbjct: 357 --FEDALFAMKVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQLAAEQTKEDLDKE 414
Query: 384 VKEDYKRLEEFLALGTSMDEISRR-EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ +L + L + + + L + +AA P +++LF
Sbjct: 415 FNDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSR----RDAVGIAANPAVQRVLFN 470
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ D + + + +++ + L++V V + + ++ +S
Sbjct: 471 HDFIQEGKVSD-PIQINPNHSVVLRVIAHTTEQQLPLDKVREQVVAAVRADRADKDGASA 529
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A+ LV K G ++ K + + R F +FS +
Sbjct: 530 ADALVARLQK-GDTLEEVAKAEKLQITPLTGLQRTAQVPAF---AATRAIFSALSPVAGK 585
Query: 563 FPIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ + Y VF VT G P ++K L Q+ + + + ++ +
Sbjct: 586 PTVGKVRLDDGRYAVFTVTRVIPGDLTKLPEEQKAMLRQQLDQIEGTLAVHAYVDMMRKR 645
Query: 614 YSVTVHDNLI 623
+ VT+H + +
Sbjct: 646 FKVTIHKSQL 655
>gi|87121304|ref|ZP_01077194.1| peptidyl-prolyl cis-trans isomerase D, putative [Marinomonas sp.
MED121]
gi|86163461|gb|EAQ64736.1| peptidyl-prolyl cis-trans isomerase D, putative [Marinomonas sp.
MED121]
Length = 611
Score = 202 bits (512), Expect = 1e-49, Method: Composition-based stats.
Identities = 107/641 (16%), Positives = 231/641 (36%), Gaps = 46/641 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ V KI + + V F ++G+ + + S TV V ++ + + S
Sbjct: 1 MLQDIRDKSQGIVVKIIIGFIVVTFALFGVDALVTGFTTSDTVAEVDGVEITRTELLQSA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + +G ++ L ++ LD L+ A L D+ L +V +
Sbjct: 61 EIQRRQLISMMGGQIDPALLEDTLLQRRALDELIQRAVLTNNANDLNLAVSDAQVDQYLI 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++ F D +F +++ + G + + + + +D
Sbjct: 121 QAEQFQ-TDGQFDQTKYLNFIRTLGYTPLAFKQRIKQDILLQQGRIALSSSEFVLSNQVD 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + + RS DYI + A+ S+ + +F++ +++ PE ++ Y++
Sbjct: 180 QVLKLQNQQRSYDYIRYSLADEVALTQVSDTEIQAYFDENTQSFQNPEQVKLDYVIISSV 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-------- 292
+ K+ +S+ EL+ Y+ E R L+ N + +DE ++L +
Sbjct: 240 DFHDKVNVSSAELEQAYQAATSTAPKEERRASHILIEANDQRSDEEARALAQDIKSKIDS 299
Query: 293 GKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G KF LA++ L LG S + +++ + V+ FGY
Sbjct: 300 GTKFEALAKQYSDDLGSKAAGGDLGYVSSGMMVPE--FENVLFSMVVDQVSGVVETEFGY 357
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ + I T S E++ ++ ++ KA + + + + + ++ ++
Sbjct: 358 HLIELREITNVDTPSLAEMEPELTQEILDRKAQDALLSAQEDITDLAYASDDLNALATEY 417
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ + G G+E+ + + + + L + V+I
Sbjct: 418 NVNIMHSDWFGRQG----GQELISSNAQAIAAAFSPELLEDSLNSGLLELNEEQVAIVRI 473
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
E P + LEE DV++ K + KA Q+ + + ++ +
Sbjct: 474 NEHKPQSNMSLEEASADVQEILLKRKATASLKQKAAQMQADVNNSAWTRVELASRGRDDI 533
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIE--NGLSYVVFKVTNSKVGPV 584
VF P V ++ N V+ + K G V
Sbjct: 534 SEI--------------------VFKMARPQGDVATSKVQSLNDGDLVLVNLLEVKDGEV 573
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
E D Y+ + +N+ + +A + + L++R
Sbjct: 574 GEDDAQRDYIERYLNQSGVSLAVAAHQKALE---NAALVER 611
>gi|134295955|ref|YP_001119690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
vietnamiensis G4]
gi|134139112|gb|ABO54855.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
vietnamiensis G4]
Length = 646
Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats.
Identities = 95/645 (14%), Positives = 215/645 (33%), Gaps = 39/645 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V +V K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAVNGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGGQFDIKMFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + L+ +G+ ++Y + L+ + V
Sbjct: 120 SDPMIASLKKPDGTIDVQRYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVSSAFTPKG 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY--I 235
+ + R V +VL + A P++A LT +++ +K ++ PE I Y
Sbjct: 180 PAQRLSELAAQQREVQALVLKSSDFAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ ++ +++ Y+ N + S + + A A ++ K K
Sbjct: 240 SPAAAAAAASAQPTDADIKKFYDDNPTHFRSEAQVRISHIFIAAASNASAADKAAAKAKA 299
Query: 296 FIQLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
LA ++ + LG ++ D K+G+
Sbjct: 300 EQLLADVKAHPDQFAQIAQKSSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGEV 359
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ V+ G+ I + +KPS F +VK IA ++ A++ ++ + +
Sbjct: 360 SGVVESDLGFHILKATEVKPSVVKPFADVKDQIAVDLKQQYAAKAFTDNAEGFTSTVYEK 419
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ + + ++I V K + V +
Sbjct: 420 AKSLQPAADKYKLTIQTATVTPTPNPQLPPTSPLNNPKFLAAVFASDSVKSRNNTQAVDV 479
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ + + + + PA L+ + V++ + AE + E K
Sbjct: 480 GNNTLISAHVVDYKPAAVPALDAIKDVVRQKVVAEQAAELAKKDGAAKLAELQKSKSTDG 539
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576
+++R +++ +S V+ + + + + Y +++V
Sbjct: 540 ---------FTPAQKVSRT--QSQGLTPAALSAVYKVDSKTLPAYVGVDLGADGYAIYRV 588
Query: 577 TNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G Q+ + Q+ + ++ +A L+ + V +
Sbjct: 589 NAVIPGTAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKL 633
>gi|83953830|ref|ZP_00962551.1| hypothetical protein NAS141_06383 [Sulfitobacter sp. NAS-14.1]
gi|83841775|gb|EAP80944.1| hypothetical protein NAS141_06383 [Sulfitobacter sp. NAS-14.1]
Length = 614
Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats.
Identities = 124/597 (20%), Positives = 246/597 (41%), Gaps = 27/597 (4%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
+ TV VG + + + +Q++ I + G ++ + A+++GLD+ +L LV
Sbjct: 33 NGSARTVGEVGDKSISVDDYARELQQQIRAIESQSGEQLSFQEAQAIGLDRAVLQRLVRL 92
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
LD +++GL + + P F G D F + + L + G+NE E+
Sbjct: 93 RALDNEADEMGLSIGDANLRERVVEIPSFQGVDGNFDREGYRFALQQAGLNENEFEQSLR 152
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQ 215
+ RT + GG+ + D + E RS + L + A D ++A L
Sbjct: 153 EEAGRTLLQEAITGGVAMPDAYADTLVSYVGEQRSFTWAKLTQDDLDAPLPDATDAQLQA 212
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
++++ D + P K ISYI + ++E++++ELQA Y+ ++Y PE R VE+L
Sbjct: 213 YYDENADQFILPASKTISYITMGPQDLLDEVELTDEELQAAYDDRADEYIQPERRLVERL 272
Query: 276 VFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
VF +Q+ AD+A +L+ G F L ++G SLSD+ LG S++ + A+
Sbjct: 273 VFRDQEAADQAAAALEVDGNTFEGLVADRGLSLSDVDLGDLSQQQLGAAG---DDVFAAE 329
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
GD + + G + V+ + PS +F+E + + + +A+ V+ + L++
Sbjct: 330 VGDIVGPLPSNLGPALFRVNGVLPSLNTTFEEARPTLVQDLAADRAARLVEVRAQDLDDQ 389
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
LA G ++++I+ K+ + + + + +
Sbjct: 390 LAGGATLEQIAEESKMTLSTIEWTQDSSESI---------AAYAGFREAATRLTEGDFPQ 440
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
L DGS +++ + R + DV + W+ + + +KA L E + +G
Sbjct: 441 IQQLDDGSVFAMRLDGTKEERPNPFDAARADVSEAWQNEQLITALRAKAETLQAELA-DG 499
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+F ++ G T R D I+ VF V+ + +
Sbjct: 500 ADFAEL----GLEPKTGTDQTR-DAVVSAAPQGFIAAVFDAAPGEVELLEGADE--VALV 552
Query: 575 KVTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ + K + K + + L +++ L + + + + V I
Sbjct: 553 RLDSIKDAGENDRMTQVKSQIATQLDDQLSQALFAAFSDDVIRRTAPRVDQQAINAV 609
>gi|296107448|ref|YP_003619148.1| peptidyl-prolyl cis-trans isomerase D [Legionella pneumophila
2300/99 Alcoy]
gi|295649349|gb|ADG25196.1| peptidyl-prolyl cis-trans isomerase D [Legionella pneumophila
2300/99 Alcoy]
Length = 624
Score = 202 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 105/637 (16%), Positives = 233/637 (36%), Gaps = 35/637 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++
Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ Q+ + + A L ++L+ +++ Q G E + I
Sbjct: 61 RRTRA---QQDLPQMTA--ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F +D FS + L+ + + + + + F+G + +
Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIK 174
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R Y + R DY+ + + A S + ++ ++ + E + Y+L +H
Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLTMH 234
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ------------ 288
+ + +I+IS DE+++ YE+NK Y +P V ++F + A + Q
Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294
Query: 289 --SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ +A + LS + G + +L + G+ + + +
Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYGRVLSNLTRPGEISTPVQTKY 354
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS- 405
GY I + KP T S QEV+ I +Q+ A K + ++L + +
Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
K+ G GK+ + + + + + + S +
Sbjct: 415 DSLKLKMQHTEPFSRDG----GKQPITKNKQVIHAAFSTDVLELGNNSEPIQIDNDSVIV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++K+ IP+R++ L+EV +KK + + L+ + E K +++ N
Sbjct: 471 LRVKKHIPSREQTLDEVRDQIKKILAKQYGDAKAKEIGSSLL--HPVEDKQQQELIANNQ 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--- 582
+ +R ++ D F+ + I + YVV K+ G
Sbjct: 529 FEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRINDGKLS 585
Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+++D I + D + L +
Sbjct: 586 SLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIE 622
>gi|148359402|ref|YP_001250609.1| hypothetical protein LPC_1300 [Legionella pneumophila str. Corby]
gi|148281175|gb|ABQ55263.1| hypothetical protein LPC_1300 [Legionella pneumophila str. Corby]
Length = 624
Score = 202 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 105/637 (16%), Positives = 234/637 (36%), Gaps = 35/637 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ + + + VA + ++++ + F ++G+ S+ S V V + + +F ++
Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSLQISDAKVIVNDKPITMQAFETNY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ Q+ + + A L ++L+ +++ Q G E + I
Sbjct: 61 RRTRA---QQDLPQMTA--ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F +D FS + L+ + + + + + F+G + +
Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIK 174
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R Y + R DY+ + + A S + ++ ++ + E + Y+L +H
Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLTMH 234
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ------------ 288
+ + +I+IS DE+++ YE+NK Y +P V ++F + A + Q
Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294
Query: 289 --SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ +A + LS + G + +L + G+ + + +
Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYGRVLSNLTRPGEISTPVQTKY 354
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS- 405
GY I + KP T S QEV+ I +Q+ A K + ++L + +
Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
K+ G GK+ + + + + + + S +
Sbjct: 415 DSLKLKMQHTEPFSRDG----GKQPITKNKQVIHAAFSTDVLELGNNSEPIQIDNDSVIV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++K+ IP+R++ L+EV +KK + + L+ + E K +++ N
Sbjct: 471 LRVKKHIPSREQTLDEVRDQIKKILAKQYGDAKAKEIGSSLL--HPVEDKQQQELIANNQ 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--- 582
+ +R ++ D F+ + I + YVV K+ G
Sbjct: 529 FEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRINDGKLS 585
Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+++D I + D + L +
Sbjct: 586 SLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIE 622
>gi|291279447|ref|YP_003496282.1| peptidyl-prolyl cis-trans isomerse D [Deferribacter desulfuricans
SSM1]
gi|290754149|dbj|BAI80526.1| peptidyl-prolyl cis-trans isomerse D [Deferribacter desulfuricans
SSM1]
Length = 626
Score = 202 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 113/645 (17%), Positives = 242/645 (37%), Gaps = 43/645 (6%)
Query: 1 MLEIIRKASR--TWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML + R + + + + FL+WG+ + + V ++ F+ +
Sbjct: 1 MLRMFRNQKKILAFFLWLVIAAFIGTIFLVWGVGG--NRGRQKNYAIKVNDFEISFNEYQ 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + +G + + ++ ++K++ D+++ L +G+ V+
Sbjct: 59 QEYDKFSNTLKSLLGGEIPN----TININKQVTDSIIEKYLLLDQANKLGVFVSDVEVFN 114
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI P F + +F +V L G+ + L + + +
Sbjct: 115 EIKNIPSFQT-NGQFDAKRYVEILRLNGLTPASFERSIKADLLVQKTKNLITQSVSVNEN 173
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + YI LN+ ++ L +FEK K++YR PE ++ YI
Sbjct: 174 EIKNEYIYRNKTAKISYIKLNSEKFKKDVTYNDEELKAYFEKNKEDYRVPEKIKLKYIKI 233
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------------EADE 285
D + K+I++S++E++ Y ++ +++ E + ++ + + +
Sbjct: 234 DPKDFNKEIKVSDEEIEKYYLQHTDEFIEKEKVAAKHILIRVKDWNNKKEVAEAKKKIEN 293
Query: 286 AFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
Q +KKG KF LA++ + LG F+K + + + K GD + ++
Sbjct: 294 ILQKIKKGAKFEDLAKKYSDDPTAKNGGDLGYFTKGQMIKE--FEDVVFKLKPGDISDIV 351
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
FGY I V KP ++ E K I +++ K KE + + +++
Sbjct: 352 KTKFGYHIIKVYGHKPEKKLTLDEAKPLIIKKLKTLKKDSYFKEYVLDIYRDILKASNIT 411
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + I + D+ P L + S+ + +G
Sbjct: 412 --AYTLEHKDIPVYETDYFSMFDN-----IPPIGNDLKLKTKLFKLETSEVTNIIDINGV 464
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
++ E + K E+V +V D+ K+ E A L K+ + I
Sbjct: 465 KYIFELIEKKKSYIPKFEDVKKEVINDYINDKSVELAKDNA----LSLIKKYNELQKIAD 520
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
+ S+ TT R+D + +S+ + + P G + + +V N K
Sbjct: 521 SKKLSITTTPDFKRIDPIPDIGTNEELSKKIFNKGKGLLETPFVVGNNIFIIEVNNIKYP 580
Query: 583 P-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
EK + SY+ + + L+S I LK+ + V+ ++
Sbjct: 581 DFSKITEDEKKEIESYILSIKQDEALNSYIEKLKNNAKIEVNPSI 625
>gi|117925439|ref|YP_866056.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
MC-1]
gi|117609195|gb|ABK44650.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
MC-1]
Length = 636
Score = 202 bits (511), Expect = 2e-49, Method: Composition-based stats.
Identities = 118/646 (18%), Positives = 249/646 (38%), Gaps = 30/646 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML ++RK++ +WV KI L+++ V F +WG+ L + + V++V S+
Sbjct: 1 MLNVMRKSANSWVIKILLILIAVSFSVWGIEG-LRNAGRDTPVLTVENWSASQGYIRQSF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ L Q++G + L ++ L +V + +GL + IA
Sbjct: 60 DRFLREQKQRLGNLPLDNPMIRQQLRQQFLQRMVDEQLMLHSAMQMGLTLSPKGLQKTIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F K KF ++ L + ++ K + +R + LLLD
Sbjct: 120 EDPTFQLKG-KFDDALYRQLLRQNRLDPKTFEQDTLVRHARAHLAQGLTQVATTPTLLLD 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
A + E R V ++L+ + ++ DP + L + E +D Y + ++ Y+L D
Sbjct: 179 DALKQESEKRRVALLMLDQATLASVDDPGDEALRAYQENNRDAYSIKQRVKVRYLLLDAE 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ--------------KEADEA 286
++++ ++ A Y+ NK Y + E R + ++ + ++A +
Sbjct: 239 SVRDELKVDEAKIIAYYDDNKPLYKTLESRKLRHILAKFKAGDATAKAAAQKKIEDAKQR 298
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ + + +L E + LG F + ++ F+L + G + V+ F
Sbjct: 299 IANGESFAEVAKLLSEDVTASQGGELGVFQRGGGLVERFEEAAFTLPE-GKVSEVVESPF 357
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ + V +I P+ T SF++VK +IA Q+ A E + LE+ LA S+ I +
Sbjct: 358 GFHLILVDHIDPAGTRSFEQVKPEIAEQLFQEGAGEAIYSKSIALEDMLATADSLATIGK 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + ++F+ D + E + + V L + Y +
Sbjct: 418 ELNLRFKETGWIEFSKLDETVSIEREAKFHEVAFSTL-----KGERSTLVELANNRYFVL 472
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG- 525
++ + A + L EV + ++ K + + L+ G ++ ++ K+
Sbjct: 473 EVTDHEDATLKPLAEVRAALLAAYRQEKAQTQAQELMDN-ALKALNSGSSWEEVAKSHAP 531
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKVGPV 584
MD E+K + F ++ + I G + K+ G V
Sbjct: 532 FQAQAPAPFTAMDKESK-VPANVRQAAFRIALDKPIYEKVISEGNHRYILKLLEVTPGTV 590
Query: 585 QEK----DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + T M+ ++ ++ +A+ + ++ +
Sbjct: 591 DTDMLANSQLQAMFTNMLGNEMREAFMAWRRKHAEISYDPKVFNNL 636
>gi|52842082|ref|YP_095881.1| hypothetical protein lpg1855 [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52629193|gb|AAU27934.1| peptidyl prolyl cis-trans isomerase D [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 624
Score = 201 bits (510), Expect = 3e-49, Method: Composition-based stats.
Identities = 105/637 (16%), Positives = 232/637 (36%), Gaps = 35/637 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++
Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDRPITMQAFETNY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ Q+ + + A L ++L+ +++ Q G E + I
Sbjct: 61 RRTRA---QQDLPQMTA--ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F +D FS + L+ + + + + + F+G + +
Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIK 174
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R Y + R DY+ + + A S + ++ ++ + E + Y+L +H
Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTLEQVTLDYVLLSMH 234
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ------------ 288
+ + +I+IS DE+++ YE+NK Y +P V ++F + A + Q
Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294
Query: 289 --SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ +A + LS + G + +L + G + + +
Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYDRVLSNLTRPGQISIPVQTKY 354
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS- 405
GY I + KP T S QEV+ I +Q+ A K + ++L + +
Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIIMDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
K+ G GK+ + + + + + + S +
Sbjct: 415 DSLKLKIQHTEPFSRDG----GKQPITKNKQVIHAAFSTDVLELGNNSEPIQIDNDSVIV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++K+ IP+R++ L+EV +KK + + L+ + E K +++ N
Sbjct: 471 LRVKKHIPSREQTLDEVRDQIKKILAKQYGDAKAKEIGSSLL--HPVEDKQQQELIANNQ 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--- 582
+ +R ++ D F+ + I + YVV K+ G
Sbjct: 529 FEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRINDGKLS 585
Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+++D I + D + L +
Sbjct: 586 SLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIE 622
>gi|269958860|ref|YP_003328649.1| putative peptidyl-prolyl cis-trans isomerase [Anaplasma centrale
str. Israel]
gi|269848691|gb|ACZ49335.1| putative peptidyl-prolyl cis-trans isomerase [Anaplasma centrale
str. Israel]
Length = 632
Score = 201 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 118/635 (18%), Positives = 234/635 (36%), Gaps = 24/635 (3%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVS--GSSTVVSVGRQKVPFSSFINSWKQELG 65
R L + F+ L V VG + + +++ EL
Sbjct: 2 RLRNVFVGAVLAAVLCAFVFVTFGSVLPFGDTASDRCVAKVGSNCLSLREYSTAYQGELA 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
I + ++ + R G+ + L+ ++ L++F ++GL + I P+F
Sbjct: 62 YIESLVHQKLSEDDIRRFGVKEMTLNRMIDDMVLEKFARELGLRVSSKSIRDLIGDMPMF 121
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-----MRPSNLLLD 180
K K F L+ G+ E YI L + + +
Sbjct: 122 QDKSGKLDERRFKDLLSDAGMTEASYIGKVRGSLPAFMLSECIFPRSGAVYSQYYDGFAQ 181
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++R VD + ++ V P++ L + + N + S V
Sbjct: 182 DVLRGIMQSRIVDVVEISPSAVENTPTPTDNDLEAMYSEGTRNGELVMPEYRSAKYMIVS 241
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
E + E++ + E E + + R V LVF ++ EAD A Q+LK GK F +
Sbjct: 242 EDDALEEVTASD--DEVESEIKNSELHDQRDVLNLVFSSESEADAASQALKGGKTFEAVV 299
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
++ G ++ I+L + +KE +P S G+ + V G+ I + N P
Sbjct: 300 KDAGTTVEAITLKNVTKELLPVE--VRSAVFGLNDGEVSGVFRSVVGWHIMKILNRHPIS 357
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLV 418
+++K+ +A ++ KA E ++ E ++ G K L
Sbjct: 358 KEDLKKLKERVAASIKRQKARELFSAGIRKANEMISHGAESFSEVESVFRKPTMGVLQNF 417
Query: 419 DFAGKDVKGKEVAA-----IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D G+D+ GK P + L + H V++ + +Y V + + P
Sbjct: 418 DSNGQDLTGKGHTYAEESSFPGIVEALPALAFSSQVGKPSHFVSIGN-AYFSVIVTDVTP 476
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
AR R +E + WK A E+ A+ LV + + G++ + + +
Sbjct: 477 ARARTFDESKHLLLDRWKNAFVAGEMRKIASNLVTKL-RAGESLGKLAGVVTKKGEDIGR 535
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS-YVVFKVTNSKVGP---VQEKDK 589
+++ + D ++QVF+ V V ++ ++ + + K +E +
Sbjct: 536 VSKTKVGGTNYPEDLVNQVFNMRVGDVGEGVTDHSMNKIFIATLKEIKTPSQVNEKELKE 595
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
F ++ + ++ +L +Y V V+ L++
Sbjct: 596 FQAHFVGSAISSIRRQLLNHLTDKYRVKVNRKLLE 630
>gi|148555266|ref|YP_001262848.1| hypothetical protein Swit_2351 [Sphingomonas wittichii RW1]
gi|148500456|gb|ABQ68710.1| hypothetical protein Swit_2351 [Sphingomonas wittichii RW1]
Length = 676
Score = 201 bits (509), Expect = 3e-49, Method: Composition-based stats.
Identities = 116/639 (18%), Positives = 228/639 (35%), Gaps = 16/639 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFIN 58
M+ R+A +W+ L ++ V F+I G+ ++ S +TV + KV + +
Sbjct: 32 MISFFRRALSSWIILGILALVLVAFIITGVESPGSIGGTSNGATVAKIDGGKVSTNDLLR 91
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ + + ++ ++ + + G + + + L+ +D + ++ G + +
Sbjct: 92 RVQNQFDALRRE-RPELDHKSFLAAGGFEGVTNGLIDARAIDAWGKEQGFAIGKRLIDAQ 150
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
IA F G F V +RLA+ I+E+E L R ++ V L
Sbjct: 151 IAGMDAFRGITGAFDETVMRNRLAQARISERELRADIAGELMRNQILTPAVALAPTPAKL 210
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
E R ++ P+ A + ++ + PE + + Y LF
Sbjct: 211 ARPYATLLLEERIGQVGIIPLAAFIDPRQPTEAEIAAAYKANIAAFTRPEARVLRYALFG 270
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ + E+ Y +N + Y + E+R + Q+V PN+ A + + G+
Sbjct: 271 AEQVAAAAAPTEAEIATYYRENADSYAAREMRGLTQVVTPNETLARSIAAAARGGQTLAA 330
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
A + G S ++ S + + A G GSFG+ + V +
Sbjct: 331 AAAKAGLEASTLTGQSKAAYGGSAGAAVADQAFAAAAGSVAGPAKGSFGWYVVKVDAVTA 390
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ E K +IA + KA E + E ++E+ +A G S E++ K+ ++ P +
Sbjct: 391 TPGRPLAEAKPEIAALLTRQKAQEALSELAGKVEDAIADGASFAEVAANNKLTVVETPAL 450
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
G+ + + A P LL F + D Y + + + IP
Sbjct: 451 LAGGQPIDRPDWKAPPELGALLKSGFAGSPDDRPTVETVVADQQYALLGVAKVIPPTPLP 510
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ----- 533
L +V V +D T + AE + +++V + G + G +L
Sbjct: 511 LAQVRPMVIRDIVTKRAAERAKAIGDKMVAAIDR-GVPLAKAIADSGVALPPARPARARQ 569
Query: 534 --INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF- 590
I R + + +F+ K P G + V + G + +
Sbjct: 570 IDIARAQQSGAQIP-EPVRALFALQKGKAKLVPSAQGEALFVTVLDQVVPGDLAKAPGLV 628
Query: 591 ---ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L + +L D I + V + I
Sbjct: 629 GATQEELARASKAELGDQFIRAVSLDVDVKRYPEAIAAA 667
>gi|54294744|ref|YP_127159.1| hypothetical protein lpl1821 [Legionella pneumophila str. Lens]
gi|53754576|emb|CAH16060.1| hypothetical protein lpl1821 [Legionella pneumophila str. Lens]
Length = 624
Score = 201 bits (509), Expect = 4e-49, Method: Composition-based stats.
Identities = 105/637 (16%), Positives = 231/637 (36%), Gaps = 35/637 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++
Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ Q+ + + A L ++L+ +++ Q G E + I
Sbjct: 61 RRTRA---QQDLPQMTA--ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F +D FS + L+ + + + + F+G + +
Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQKEVRQGMLLNQQRFAFMGTSFALSDEIK 174
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R Y + R DY+ + + A S + ++ ++ + E + Y+L +H
Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLSMH 234
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ------------ 288
+ + +I+IS DE+++ YE+NK Y +P V ++F + A + Q
Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYN 294
Query: 289 --SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ +A + LS + G + +L + G + + +
Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSIANKGILPWITGGQNEYDRVLSNLTRPGQISIPVQTKY 354
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS- 405
GY I + KP T S QEV+ I +Q+ A K + ++L + +
Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIIKDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
K+ G GK+ + + + + + + S +
Sbjct: 415 DSLKLKIQHTEPFSRYG----GKQPITKNKQVIHAAFSTDVLELGNNSEPIQIDNDSVIV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++K+ IP+R++ L+EV +KK + + L+ + E K +++ N
Sbjct: 471 LRVKKHIPSREQTLDEVRDQIKKVLAKQYGDAKAKEIGSSLL--HPVEDKQQQELIANNQ 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--- 582
+ +R ++ D F+ + I + YVV K+ G
Sbjct: 529 FEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRINDGKLS 585
Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+++D I + D + L +
Sbjct: 586 SLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHAKIE 622
>gi|115351959|ref|YP_773798.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria AMMD]
gi|115281947|gb|ABI87464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria AMMD]
Length = 644
Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats.
Identities = 95/644 (14%), Positives = 222/644 (34%), Gaps = 39/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R R +A + L+VL G+ S+ V ++ K+ F ++
Sbjct: 1 MLDFFRNHQRLMMALLLLIVLPGL-GFVGIQGFRGFFDDSANVAAINGHKITRVEFDGAF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ Q +G + + + K++LD L+ L + + L A V +
Sbjct: 60 RQQIDQARQALGGQFDIKAFDTPEHRKQVLDGLIQQRVLADETQRLHLTASDNAVRDALM 119
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + L+ +G+ ++Y + L+ + V
Sbjct: 120 SDPMIASLKKPDGSIDVERYAQLLSFQGMTPEQYQERVRYSLALQQIPASIVASAFTPKG 179
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + R V +V A P++A LT +++ +K ++ PE I Y+++
Sbjct: 180 PAQRLSELAAQQREVQALVQKTSDYAAKVQPTDAQLTAYYDAHKQSFATPETATIQYLVY 239
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ ++ +++ Y+ N + S V + +A A ++ K K
Sbjct: 240 SPAAAAASAQPNDADIKKFYDDNPTHFRSEAQVRVSHIFIAAASDASAADKAAAKAKAEQ 299
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ + LG ++ D K+GD +
Sbjct: 300 LLADVKAHPDQFAQIAQKNSQDAPSAAKGGDLGFITRGSTAGGKAFDDAAFALKQGDVSG 359
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ G+ I + +KPS F +VK IA Q++ A++ ++ + +
Sbjct: 360 VVQSDLGFHILKATEVKPSVVKPFADVKDQIAVQLKQQYAAKAFTDNAEGFTSTVYEKAK 419
Query: 401 M-DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + K+ ++ + P +F + + +
Sbjct: 420 TLQPAADKYKLTIQTATVMPTPNPQLPPTSPLNNPKFLAAVFASDSVKSQ-NNTQAIDVG 478
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + + ++ + PA L+ + V++ + E + E K
Sbjct: 479 NNTLISARVTDYKPAAVPALDTIKDAVRQKVVAEQATELAKKDGAAKLAELQK------- 531
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
+++RM +++ +S V+ + + + + Y +++V
Sbjct: 532 --SKSADGFTPVQKVSRM--QSQGLTPAALSAVYKVDAKTLPAYVGVDLGADGYAIYRVN 587
Query: 578 NSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G Q+ + Q+ + ++ +A L+ + V +
Sbjct: 588 AVIPGTAVDPQQLAAAQQQMAQVEAQSEGEAYLAALRDRSKVKL 631
>gi|83942589|ref|ZP_00955050.1| hypothetical protein EE36_16152 [Sulfitobacter sp. EE-36]
gi|83846682|gb|EAP84558.1| hypothetical protein EE36_16152 [Sulfitobacter sp. EE-36]
Length = 614
Score = 200 bits (507), Expect = 7e-49, Method: Composition-based stats.
Identities = 125/597 (20%), Positives = 245/597 (41%), Gaps = 27/597 (4%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
+ TV VG + + + +Q++ I + G ++ + A+++GLD+ +L LV
Sbjct: 33 NGSARTVGEVGDKSISVDDYARELQQQIRAIESQSGEQLSFQEAQAIGLDRAVLQRLVRL 92
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
LD +++GL + + P F G D F + + L + G+NE E+
Sbjct: 93 RALDNEADEMGLSIGDANLRERVVEIPSFQGVDGNFDREGYRFALQQAGLNENEFEQSLR 152
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQ 215
+ RT + GG+ + D + E RS + L + A D ++A L
Sbjct: 153 EEAGRTLLQEAITGGVAMPDAYADTLVSYVGEQRSFTWAKLTQDDLDAPLPDATDAQLQA 212
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
++++ D + P K ISYI + ++E++++ELQA Y+ ++Y PE R VE+L
Sbjct: 213 YYDENADQFILPASKTISYITMGPQDLLDEVELTDEELQAAYDDRADEYIQPERRLVERL 272
Query: 276 VFPNQKEADEAFQSLK-KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
VF +Q+ AD+A +L+ G F L ++G SLSD+ LG S++ + AK
Sbjct: 273 VFRDQEAADQAAAALEVDGNTFEGLVADRGLSLSDVDLGDLSQQQLGAAG---DAVFAAK 329
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
GD + + G + V+ + PS +F+E + + + +A+ V+ + L++
Sbjct: 330 VGDIVGPLPSNLGPALFRVNGVLPSLNTTFEEARPTLVQDLAADRAARLVEVRAQDLDDQ 389
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
LA G ++++I+ K+ + + + + +
Sbjct: 390 LAGGATLEQIAEESKMTLSTIEWTQDSSESI---------AAYAGFREAATRLTEGDFPQ 440
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
L DGS +++ + R + DV + W+ + + KA L E + +G
Sbjct: 441 IQQLDDGSVFAMRLDGTKEERPNPFDAARADVAEAWQNEQLITALRVKAETLQAELA-DG 499
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+F ++ G T R D I+ VF V+ + +
Sbjct: 500 ADFAEL----GLEPKTGTDQTR-DAVVSAAPQGFIAAVFDATPGEVELLEGADE--VALV 552
Query: 575 KVTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ + K + K + + L +++ L + + + + V I
Sbjct: 553 RLDSIKDAGENDRMTQVKTQIATQLDDQLSQALFAAFSDDVIRRTAPRVDQQAINAV 609
>gi|34498008|ref|NP_902223.1| peptidyl-prolyl cis-trans isomerase [Chromobacterium violaceum ATCC
12472]
gi|34103863|gb|AAQ60223.1| probable peptidyl-prolyl cis-trans isomerase [Chromobacterium
violaceum ATCC 12472]
Length = 612
Score = 200 bits (506), Expect = 7e-49, Method: Composition-based stats.
Identities = 102/638 (15%), Positives = 217/638 (34%), Gaps = 57/638 (8%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E ++ V ++ L + + F+ +G+ S + +V VG+ K+ +
Sbjct: 1 MFEFVQNNKT--VIQVILGAVALTFVGFGVGSY-SSATDDPYLVKVGKTKIYKRDLDRAL 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ G + + L+NL+ L D G ++ IA
Sbjct: 58 E----------GQPSDPAT------RQAALENLIRQELLLAEARDHGAAVSPDQLRKAIA 101
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F ++ +FS + L N + + ++ + + G SN ++
Sbjct: 102 SIPAFQ-ENGQFSAQRYSEFLKSRYPNPEAFEADISRDILLQSQLSSVAGTQFVSNTVVT 160
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E R + +VL + A + +++ + PE ++ Y++
Sbjct: 161 RVAGLLGEGRELQPLVLKPSDFASEVKTDAAAIKAYYDANAKRFSLPEQVKLDYVVLSQD 220
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--------- 291
+ I++S+ E+Q Y+++K + R L+ + E +K
Sbjct: 221 ALAQGIKVSDAEVQKYYDQHKADLAGEQRRASHILLTVAKDAKPEQKAKVKAEAEAILKE 280
Query: 292 ---KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
KF +LA+ + + LG F + D K G + ++
Sbjct: 281 VRVNPAKFAELAKAKSQDPGSAEKGGDLGFFGHGMMVKP--FDDAVFKMKPGQISDLVET 338
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+G+ I + +K S +VK + ++++ KA+ E +L E D +
Sbjct: 339 EYGFHIIRLDAVKSQ---SLDDVKGAVVDKLQKQKAAALFHEQAGKLNEIAYQQA--DSL 393
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ +++ D+ ++ ++ K V + +
Sbjct: 394 KGVVDALKLEVKHSDWVRRNQPSQDELLGNAKLLSAVFSDDVLKKKHNSEVVDIGGNRLV 453
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
+I E P R + L +V ++K+ A+ K L+ E K GK
Sbjct: 454 VARIAEHQPERQQPLADVTDAIRKELVERDGAKLADKKGQALLAEL-KAGKGVDAQ---- 508
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSKVG 582
++R + VF+ + F + YV+++V
Sbjct: 509 --KWGPAATVSR--RAAAGMPAADVRAVFAVAGSKLPGFAGVRHDTGEYVIYRVNKVIPA 564
Query: 583 PV---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P +K + + L ++ L S + L+ +Y VT
Sbjct: 565 PAVTDADKAQLGNVLGELSANSQLASYLKALREKYPVT 602
>gi|120610416|ref|YP_970094.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
AAC00-1]
gi|120588880|gb|ABM32320.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
AAC00-1]
Length = 642
Score = 200 bits (506), Expect = 7e-49, Method: Composition-based stats.
Identities = 100/643 (15%), Positives = 225/643 (34%), Gaps = 43/643 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IRK S+ V + +++ F++ G+ F+ S S+ V V + + N+
Sbjct: 1 MFESIRKHSK-VVMIVLFLLIIPSFVLVGIDRNYFT-SKSAVVARVDGHDITQDDWDNAH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E I + V++ S L+ LV + + L ++ +
Sbjct: 59 RMETDRIRAQS-PSVDARLLDSPRARYATLERLVRDRVMQAAAVKMHLVTSDAQLARTLQ 117
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D + + + + +G+ + + + + LS + V+G +G
Sbjct: 118 GIPAIAALKRPDGSLDAEAYRALVGSQGLTPEGFESNVRRELSLSQVMGGVLGSAFAGQE 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
A ++ R + + + A P++ L +++ ++ +R PE+ + Y++
Sbjct: 178 PARLALDALYQRREIQVARFDAKDFAAKVAPTDDELQSYYKAHEAQFRQPEHADVQYVVL 237
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA----------- 286
D+ I +S D+L++ Y++N E+ E R ++ K+A A
Sbjct: 238 DLDAVRASITLSEDDLRSYYKENLERLAGKEERRASHILINAPKDAPAADREKARARAQA 297
Query: 287 --FQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
Q K F ++A + + S LG F + + + KKGD +
Sbjct: 298 LLEQVRKAPGTFAEVARKNSQDTGSAPSGGDLGFFKRGDMVKPFEDAAFSM--KKGDISD 355
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
++ +GY I ++++K +F+EV+ + + + +A K E +
Sbjct: 356 LVESEYGYHIIQLNDVKTPRQPTFEEVRAKLETEAKQQQAQRKFAELAEVFSNTVYEQAD 415
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ ++ + K+ V +A + E L ++ +
Sbjct: 416 SLQPVADKLKLKVQTASGVARTPLPGAQGPLANGRFLEALFAADSVQNKR--NTEAIETA 473
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + ++ PA ++V V++ + ++AE + + + +
Sbjct: 474 PSTLVAGRVAAYTPASTPAFDQVKARVRELFVADRSAELARKEGEARLAAWKAAPASATG 533
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVT 577
+G + I+R E + + + + F Y V KVT
Sbjct: 534 LGNLV--------TISRDKPEGQ--PRPVVDAALQVNADTLPAFAGTPLGAQGYAVVKVT 583
Query: 578 NSKVGPVQEKDKFISY---LTQMMNKDLLDSVIAYLKSQYSVT 617
+ + + + LK ++ V
Sbjct: 584 RIVPRDPSDPAVARQQHQQYAEAEAQAEAMAYYELLKDRFKVQ 626
>gi|304413823|ref|ZP_07395240.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Candidatus
Regiella insecticola LSR1]
gi|304283543|gb|EFL91938.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Candidatus
Regiella insecticola LSR1]
Length = 623
Score = 200 bits (506), Expect = 8e-49, Method: Composition-based stats.
Identities = 106/632 (16%), Positives = 261/632 (41%), Gaps = 29/632 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E +R A+ + KI +V++ + F++ G+S L + V +K+ + +++
Sbjct: 1 MEKLRAATNSVALKIIIVLIILSFILTGVSGYLVGGAN-DYAAKVNGEKISQAKLEQAFQ 59
Query: 62 QELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
E + Q++G + S + L ++ L+ L++ L+Q+ + +GL +V
Sbjct: 60 SERARMQQQLGEQFSTLASNESYMSKLRQQTLEQLINNVLLNQYTQKLGLTVSDEQVKES 119
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I + P F + KF + +++ + G ++ + L ++ +
Sbjct: 120 IRQIPYFQTDN-KFDNTKYLNLINSMGYKPDQFAQLQLQQLILQQLLQAVGSSEFILPME 178
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
+ + + R V ++ + A +N L ++ + K ++ AP +ISYI D
Sbjct: 179 MKKTAELVLQQRDVRLATIDVNALQAHQKVTNTELKNYYHQNKKDFIAPAEIKISYIFMD 238
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ E +KKI +S E+++ Y+++K Y PE + + +KEA LK G F
Sbjct: 239 MAEIQKKITVSEKEIESYYQQHKNNYIQPERKHFSVIQLKTEKEAQAILAELKTGADFAT 298
Query: 299 LAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+++ + +LG D +L +KG + VI S GY+I ++
Sbjct: 299 LAKQKSVDIISRKNGGTLGWLEASMTLDEL---KQANLTEKGQLSDVIKSSVGYLIVRLN 355
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+IKP + +F+EV+ ++ +++ K + +++ A + D ++ E +
Sbjct: 356 DIKPEQSRAFKEVRTELLKKVQQEKTLDAYYALQQQVSTAAAN--NNDSLASAEVAADLQ 413
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
++ + E+ P + + + + + +++
Sbjct: 414 AKKTNWFTRRTVPAELNFKPVIQAIFEGSLIGADGASSGNSDVINVEGDKAFVIRVDGYT 473
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
P + + ++ +++++ K K ++ +++ +E I K G +
Sbjct: 474 PEKPQSFDQASSEIRELIKRQKAENAARTQGEKILAALRQEKDI--QIMKKEGLNFGKKE 531
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
++R + I +F+ V ++ ++V+ ++ G + + +
Sbjct: 532 TLSRSSYD-----EMLIKTIFALAHPQKNKPVYGLSQDSKGNFVLIELLTVTAGKLSQDE 586
Query: 589 K--FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ FI+ + + + ++++A L Q ++ +
Sbjct: 587 EASFINKMQEASSGMNFEALMANLHQQATIKI 618
>gi|91788924|ref|YP_549876.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
JS666]
gi|91698149|gb|ABE44978.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
JS666]
Length = 643
Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats.
Identities = 111/644 (17%), Positives = 224/644 (34%), Gaps = 43/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + IRK ++ + +++ F+++GL S V V + + S + +
Sbjct: 1 MFDFIRKHTK-VTMALLFLLIVPSFILFGLDGYNRSREQGVAVARVDGKDIIQSEWDRAH 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E+ + + ++++ S L+ LV + + L R+ E+
Sbjct: 60 QLEVDRLRASM-PSLDAKLLDSPQARYATLERLVRDRVIAAAADKFKLVISDQRLARELQ 118
Query: 121 R---SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ D + + L +G++ + + + LS V+ S+
Sbjct: 119 QSSEIASLRRSDGNLDMERYRQVLGSQGMSPEMFEANVRADLSNRQVLTGIGASGFSSSS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D A YFE R + N A P++A L Q+++ + ++APE I Y++
Sbjct: 179 AADLALNAYFEKREIQLARFNAADFAAKLSPTDADLDQFYKANEKLFQAPEQASIEYVML 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
DV K I I+ +L+ YE+N ++ E R ++ + K A + K K
Sbjct: 239 DVETVRKSITINEADLKTYYEQNLQRLSGAEERRASHILITSPKTASAEERQKAKAKAEE 298
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + S L F++ + + KKGD +
Sbjct: 299 LLAAVKKSPDTFADVARKNSQDPGSAPSGGDLDFFARGAMVKP--FEDAVFSMKKGDISA 356
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
V+ FGY I +++IK SF+E+K ++ ++ +A +K E +
Sbjct: 357 VVESEFGYHIIRLTDIKAPKQRSFEEMKPELEADLKKQQAQKKFSEAAEAFTNGVYEQAG 416
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ ++ R K+ V + G K + + +
Sbjct: 417 SLKPVAERLKLDIKTASNVTR--QPSAGTTGVLANPKFLNALFGPDAVEKKRNTEAIEVA 474
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ +I + PAR + EV V++ W ++AEE + ++ +
Sbjct: 475 PSQLVSGRILQYTPARTQPFAEVKDIVRQRWLAQRSAEEARKEGLAKLVAW--------- 525
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVT 577
K AS + + + + I + F + Y + KV
Sbjct: 526 --KAAPASAVLAAPVLVSREQTQNLPVQVIDAALRVDASALPVFAGVDLGAQGYAIVKVA 583
Query: 578 NS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + Q + LK ++ +
Sbjct: 584 KVMPRDARPDAAAKQERNQYAQWWTSAENLAYYNGLKERFKAEI 627
>gi|124267144|ref|YP_001021148.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
[Methylibium petroleiphilum PM1]
gi|124259919|gb|ABM94913.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
[Methylibium petroleiphilum PM1]
Length = 640
Score = 199 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 98/642 (15%), Positives = 225/642 (35%), Gaps = 42/642 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E +R +R + I ++++F F+ +G+ G++ V V + + + +
Sbjct: 1 MFEFVRSHTR-LLQFILVLLVFPAFVFFGVQGYTGMSEGNAVVAKVAGTSITQAEWDAAH 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ ++ + + V+ + + ++ LD LV + + + L A R+ A
Sbjct: 60 RNQVERLRAQS-PGVDLKLFDTPEAKQRTLDALVRERVMLVAADKLHLTASDERLQRVFA 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P K + LA +G++ +++ + L+ V+ G + +
Sbjct: 119 SDPQL-AFLRKPDGSLNADVLAAQGMSARQFEQQLRQDLAMRQVLQGVSGTVLAPSRPTS 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKRISYILFD 238
A + R V + + ++A + +++ + + PE I Y++ D
Sbjct: 178 TALDALLQQREVRIARFEAQKFVTKVNVTDADIEAYYKDGRHAAEFETPEQASIEYLVLD 237
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------ 286
+ + + +S+D+L+ Y +N+ +Y +PE R ++ +K A
Sbjct: 238 LDAIKSGLTVSDDDLRKYYAENESRYVAPEERRASHILIKAEKGASAEQREKARTKAATL 297
Query: 287 -FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
++ K KF +LA++ + L F++ + + K G + V
Sbjct: 298 LAEARKDPAKFAELAKKNSEDPGSAVQGGDLDFFARGAMVKPFEDAA--FALKPGQLSEV 355
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTS 400
+ FGY + ++ ++ +F+ VK +I N+++ A + E + S
Sbjct: 356 VESDFGYHVILLTAVRGGEKKAFESVKAEIENEVKQQLAQRRYAEAAEIFSNTVYEQADS 415
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + K+ V +A+ + E L ++ V L
Sbjct: 416 LKPAAEKLKLTVRTASGVARTPAQGTTGALASPKFLEALFAAETLRNKR--NTEAVDLGG 473
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ +I E P+R L EV V++ ++A +A + +
Sbjct: 474 SQLVAGRIVEYAPSRKLPLAEVKDRVRERVVVEQSAALARKEALARLAAWKGG------- 526
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
+ G + + I V + + + Y V +V
Sbjct: 527 AEPEGLE----PAMTVSRGRQQELPPALIDAVMKASPAPLPSWTGVDFGDEGYAVVRVDK 582
Query: 579 SKVGPVQ--EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + Q+ ++ A LK +Y V +
Sbjct: 583 LLPRDAAAGDDKRLQQQYGQIWGAAEDEAYYAALKERYKVKI 624
>gi|332284237|ref|YP_004416148.1| peptidyl-prolyl cis-trans isomerase D [Pusillimonas sp. T7-7]
gi|330428190|gb|AEC19524.1| peptidyl-prolyl cis-trans isomerase D [Pusillimonas sp. T7-7]
Length = 655
Score = 199 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 115/663 (17%), Positives = 237/663 (35%), Gaps = 46/663 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + IR R + + LV++ F++ G+S VSG +V++G + F +
Sbjct: 1 MFDFIRTHQR-LMQLVLLVLILPSFVLIGVSGYTNYVSGDHDIVTLGDTSITQQDFDQAR 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ +L + Q + S +L++L+ L + + IA
Sbjct: 60 RNQLQQLQQSSQGAFDPAILDSPAARSALLESLIDRTVLVETATKERFSVSDSVLRQTIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P D +FS + + LA G+ +++ L+ V+G ++++D
Sbjct: 120 SMPQLQV-DGQFSAERYNDVLASAGLTTRDFEQSQRGELALGRVLGPVTMTASVPSVVID 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ K E R++ + ++A + W+EK K + PE Y+L +
Sbjct: 179 KLKLALTEQRTIRLLAFPAAEQEKEVQITDADIQDWYEKNKQSLELPEQLSAQYLLLNEE 238
Query: 241 EKEKK-IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI-- 297
+IS+++LQ YE+NK +Y P V + +A EA +S K
Sbjct: 239 AAMANLPQISDEDLQKYYEQNKARYVQPARVNVSHIQINIPADASEAQRSEALAKAQDIA 298
Query: 298 ---------------QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+++ G + LG +K P + + + K G + +
Sbjct: 299 KRAQADAAAFAELAQNESQDAGTAKEGGKLGWITKGSWP--AQLEQVVFALKAGQVSDAV 356
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSM 401
G GY + + ++ SF+E K + ++ +++ + +L S+
Sbjct: 357 EGPGGYHVFLANEVQAEKGESFEEAKAKVQAEVSRQLGADRYADMATKLTSLVYDNPDSL 416
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE-----------QLLFRVFGKDDPL 450
+ + + + A + +
Sbjct: 417 QAAADELGLKVKTATGIARDRLLASDEVPADAASASEDAALLDDVRVRRALFSPQVLNEK 476
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
+ + + M V++ PA +L +V +++ KT + + +A Q+ LE
Sbjct: 477 QNSGVIEISPDTMMVVRVANVTPAHVPELAQVSDHIREQLKTERAL-LAAEQAGQVALET 535
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL- 569
K+ ++ + + G L ++R+D + F+ E + + G
Sbjct: 536 FKK-QDPSQVPEGFGTPLE----VSRIDP--QGLDQAVTDAAFNVSTETLPVYTGVKGSQ 588
Query: 570 SYVVFKVTNSKVGPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
YV+ +V + K G V L Q + +V+ +++Q VT+ Q L
Sbjct: 589 GYVLVRVESVKPGDVDNPLLAGLPMQLDQAWGQAEEQAVLEAMRAQAKVTLLPEA-QEAL 647
Query: 628 DGE 630
GE
Sbjct: 648 AGE 650
>gi|54297774|ref|YP_124143.1| hypothetical protein lpp1825 [Legionella pneumophila str. Paris]
gi|53751559|emb|CAH12977.1| hypothetical protein lpp1825 [Legionella pneumophila str. Paris]
Length = 624
Score = 199 bits (504), Expect = 1e-48, Method: Composition-based stats.
Identities = 102/636 (16%), Positives = 234/636 (36%), Gaps = 35/636 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++
Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ Q+ + + A L ++L+ +++ Q G E + I
Sbjct: 61 RRTRA---QQDLPQMTA--ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F +D FS + L+ + + + + + F+G + +
Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQNEVRQGMLLNQQRFAFMGTSFALSDEIK 174
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R Y + R DY+ + + A S + ++ ++ + E + Y+L +H
Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLSMH 234
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ------------ 288
+ + +I+IS D++++ YE+NK Y +P V ++F + A + Q
Sbjct: 235 DIKSQIKISPDQIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQDSIKQKADEVYS 294
Query: 289 --SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ +A + LS + G ++ +L + G + + +
Sbjct: 295 DLKKHPEQFDKYVASKSDDKLSITNKGILPWITGGQNEYGRALSNLTRPGQISIPVQTKY 354
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS- 405
GY I + KP T S QEV+ + +Q+ A K + ++L + +
Sbjct: 355 GYEIFKLIAYKPVTTKSLQEVENIMKDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVL 414
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
++ G GK+ + + + + + + S +
Sbjct: 415 DSLQLKIQHTEPFSRDG----GKQPITKNKQVIHAAFSTDVLELGNNSEPIQIDNDSVIV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++K+ IP+R++ L+EV +KK + + L+ + E K +++ N
Sbjct: 471 LRVKKHIPSREQTLDEVRDQIKKILAKQYGDAKAKEIGSSLL--HPVEDKQQQELIANNQ 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--- 582
+ +R ++ D F+ + I + YVV K+ G
Sbjct: 529 FEWHSVENASRDSDKANSLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRINDGKLS 585
Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+++D I + D + L ++
Sbjct: 586 SLDQEQRDSLIQQIEASYGMMDYDLYVNNLLHHANI 621
>gi|194289547|ref|YP_002005454.1| peptidyl-prolyl cis-trans isomerase [Cupriavidus taiwanensis LMG
19424]
gi|193223382|emb|CAQ69387.1| PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Cupriavidus taiwanensis LMG
19424]
Length = 644
Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats.
Identities = 95/644 (14%), Positives = 208/644 (32%), Gaps = 41/644 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R R + + ++V F+ +G+ + S V + + N
Sbjct: 1 MLDFVRNNRRLMLLLLLVLVF-PSFVFFGVESYSRFMDSSHDAAKVDGRAISVQEVDNVV 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q +G + + K +L+ L+ + + L ++ EI+
Sbjct: 60 RDQSERARQILGANYDPRQFEGPEARKAVLEQLIQQRVMANAVASEHLTVSDAKLLEEIS 119
Query: 121 RSPLF----HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
P GKD K ++ L +G+ +++ L+ +
Sbjct: 120 SLPAIAQLPRGKDGKIDDKAYLQLLQSQGMTPEQFDARMRFELAMQQLGASVAATAFVPK 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
L+++ + R V ++ A P A L +++ ++ ++ PE ++ Y++
Sbjct: 180 SLIERLMAARDQQRDVQALLFKPAGYTAKVQPDAAALKAYYDSHQQDFSVPEQAKVEYLV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--------- 287
++ +EL++ YE N ++ E R ++ K+A A
Sbjct: 240 LSGEALAASQAVTPEELKSYYESNIARFRVDEQRRASHILISAPKDAPAAQRQAAKDKAT 299
Query: 288 ----QSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
+ K F +A + + LG + + + K+G +
Sbjct: 300 KLLEEVRKHPDTFADVARKNSQDPGSAEKGGDLGFMGRGALVKP--FEDAMYALKEGQIS 357
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALG 398
V+ FGY I ++ KP+ T + V+ ++ ++R A +K E
Sbjct: 358 DVVETDFGYHIIKLTGTKPAETRPLEAVRTELEAELRKQFADKKFAEQADAFGNTVYEQA 417
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
S+ + + K+ V G + K V +
Sbjct: 418 DSLKPAADKFKLTIQTADKVTRQPNPALGAQSPLNNEKLLKALFSDDAIKNKRNTEAVQV 477
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ + +I PA RK EEV V++ + + A + +
Sbjct: 478 APNTLVAARIVAYRPATVRKFEEVEAQVREGYIAQQAAALARKDGEARLAALKQ-----A 532
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576
D + G ++R + + V + + Y V+++
Sbjct: 533 DSAEGFG----PVQTVSRTKAD--GMTPQAVEAVMRADAAKLPALVGVDLGAQGYAVYRI 586
Query: 577 TNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
T ++ L Q+ + L + LK++ V
Sbjct: 587 TKVSQPAQANPAQRQAAAQQLAQLAGQSDLQAFYESLKARAKVK 630
>gi|114771096|ref|ZP_01448536.1| hypothetical protein OM2255_03322 [alpha proteobacterium HTCC2255]
gi|114548378|gb|EAU51264.1| hypothetical protein OM2255_03322 [alpha proteobacterium HTCC2255]
Length = 624
Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats.
Identities = 120/605 (19%), Positives = 255/605 (42%), Gaps = 27/605 (4%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
++ S S++ VG + +P +S+ S + + IS++IG + S+ + GL +
Sbjct: 29 IASGGVDGSRISSIGKVGEEPIPVTSYAQSLRNTIQNISRQIGRQLTSQEISAYGLQSEA 88
Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
L+N+VS A L + + + V EI +P F D KF + + L G++ K
Sbjct: 89 LENVVSSAALSNEAKRLKISVGDDLVAEEIIATPTFTSVDGKFDKEAYEFALENSGLDTK 148
Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR-HVPAIADP 208
EY K ++R+ + G G + + +F E RS D+ ++ + +P
Sbjct: 149 EYELQTRKAIARSLIEGAVASGTKTPSSHAMTLIKFAREERSFDWASIDKKLLSTQAINP 208
Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
+ L ++K Y AP ++++Y+L +I +S EL+ EY+ +++ P
Sbjct: 209 TIDQLKAHYDKNNILYTAPLSRKLTYVLLSPEMLADRIVVSQSELKDEYKSQPDRFNKPA 268
Query: 269 IRTVEQLVFPNQKEADEAFQS-LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
R +++++F + K A K+ F ++AE++G + +DI LG K + D + D
Sbjct: 269 RRIIDRIIFDSVKTARTVKDQLDKEEVSFTKVAEDRGLTQTDIDLGDIEKGQL-DKDIDD 327
Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
+F+ ++ G I + G + ++ I SF + +++ + ++ + + E
Sbjct: 328 LLFNASEVG-IYGPIDTNLGPALFQINAIIDPQNTSFADAAEELTAEYVSIESRKLINEM 386
Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
+++ LA G +++EI++ +++L + + G K
Sbjct: 387 ITDIDDLLAQGLTLEEIAKE---TAMELEKISYDSTTENGI------AAYDGFRAEALKV 437
Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
L DG +++ + I R E V V DW + + + A+ L+
Sbjct: 438 KIGGFPELRELSDGGVFALRLDDLIEPALRPFETVKDQVATDWSASEDKKSLLKLADTLI 497
Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
++ G+ F + + + + I R + + ++FS I+N
Sbjct: 498 IKLDN-GETFESL----NLNAESVSSITRNKYID-GIPAQLLEELFSNKTGKTS--KIDN 549
Query: 568 GLSYVVFKVTNSKV--GPVQEKDKFIS----YLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
G + ++ ++ + E + +S L+ + DLL + LK + V ++ N
Sbjct: 550 GDTVLLARLNDISEFNSETDESKELLSQVGIQLSNQVTGDLLRLFASALKDRDGVILNQN 609
Query: 622 LIQRY 626
+ +
Sbjct: 610 AVNQI 614
>gi|94263261|ref|ZP_01287077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
proteobacterium MLMS-1]
gi|93456344|gb|EAT06468.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
proteobacterium MLMS-1]
Length = 630
Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 98/644 (15%), Positives = 235/644 (36%), Gaps = 34/644 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML ++R+ +R+ + + + ++ + F+ W + G TV V + + F +
Sbjct: 1 MLALLRRKARSPIVLVAIAIIILVFIFWLPQ--MGGDGGPGTVAVVNEEPLSLREFQRRY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ L + G V+ + ++G+ +++L L+ L Q + GL A V EI
Sbjct: 59 NETLSQYRDEFG-VIPPDLLEALGIREQVLQQLIQEQLLLQSAKKTGLPATSSEVQREIQ 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F + +F + + L ++ KE+ L R ++ VG + S+ +
Sbjct: 118 SMGEFSDEAGRFDLERYRQTLTAARLSVKEFEQGIRTDLLRRKIIDHLVGFAQVSDDEVR 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + + + Y+ L + PS L +F++ +Y +P R+ Y+LF
Sbjct: 178 QRFHYDHDQVRLAYLRLAAADFKPASTPSAEELEAFFQENSQDYLSPPMVRLDYLLFTPE 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP------------NQKEADEAFQ 288
+ + I A YE N+E++ PE R ++ +++ +
Sbjct: 238 REPEAIAEEEI--VAYYEANREEFSLPEQRRARHILIRSADNDSPELRASRKEQLRAVLE 295
Query: 289 SLKKGKKFIQLAEEQGKS--LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ G F +L + + LG F ++ + + + + G+ + ++ F
Sbjct: 296 RARAGHDFAELVALYSEDARAAGGDLGFFQRDEMVEP--IEEAAFALEPGEISDIVETRF 353
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ I + ++P+ + EV+ +IA++++ + ++ E + S++ +
Sbjct: 354 GFHILKLDELQPARQLELAEVRDEIADRLQDEEIQDESFARAGEAYELVLSEGSLERGAA 413
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
L + A + L +A D Y +
Sbjct: 414 AADEQVHTTGLFARQNPPARLAPYAGLLETAFDL-------GEGELSSIIAAGDDGYAIL 466
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+++ + L EV +V+ DW + + A++ + +G+ I +
Sbjct: 467 HVRQRQEPQVPSLAEVKEEVQADWLASQARQAARRAADEALTALH-DGRELAAIAADHAV 525
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKVGPVQ 585
L + +R I E + + G + V ++ + G +
Sbjct: 526 ELQESPWFSRATATAVDLPEALIETGLGLRGEEPLPAEVVAAGDHFYVPRLLERRPGDEE 585
Query: 586 EKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ L + + ++++ + + + + + ++R
Sbjct: 586 LFQRWADPIRRELLRAKQEAVIETWVGHQLKEADIRLTPGALER 629
>gi|15837793|ref|NP_298481.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
gi|9106161|gb|AAF84001.1|AE003953_5 peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
Length = 655
Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats.
Identities = 107/669 (15%), Positives = 230/669 (34%), Gaps = 60/669 (8%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV---VS------------ 45
ML+ +R+ + W+A + +L +PFL + S
Sbjct: 1 MLQKLREKTSGWIATAIIGLLVIPFLFVIDVRYIEGGGKDDVAQLQASPTWWKSAPAFWP 60
Query: 46 ----VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
RQ + F + + Q + G ++ ++ K+LD L+ +
Sbjct: 61 ISLLWQRQGISKQEFQSRFDQARLQQRAQQGEGFDAREFETLNNKLKLLDQLIEEHVMRL 120
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN--EKEYIDHYTKML 159
E G+ G V IA F K KF+ D + LA+E + Y ++ M+
Sbjct: 121 VAEGAGVVISDGAVRSIIANDQRFQVKG-KFNQDRYRLLLAQEPTMRTPQMYENYVRSMM 179
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + N L++ + R+ + + L + A+ S+ + +W+
Sbjct: 180 QLSMIPSTIFDSGFVPNTELERILVLLGQTRNAELVTLPALKLDM-AEISDMQIKEWYAA 238
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
++D++R PE Y+ + S L+ Y+ + E R ++
Sbjct: 239 HRDDFRQPETLSFEYVDL-DAAHLPRPTPSEAVLRKRYDAQQRGEAQNEQRKAAHILITA 297
Query: 280 QKEADEAF-----------QSLKKGKKFIQLA----EEQGKSLSDISLGSFSKEYIPDVS 324
+A ++ K G F LA ++ G + LG + +
Sbjct: 298 GADAASQKVAEAKAAKLVEEARKPGVDFAALARINSQDPGSKDAGGDLGWVQRGMMVKP- 356
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ + K G+ I FG + + IK + + F+ V+ +A + ++
Sbjct: 357 -FEDVLFAMKVGEVVGPIKTEFGNHVIKLEEIKAAKQLPFEAVRDQLAAEQTKEDIDKEF 415
Query: 385 KEDYKRLEEFLALGTSMDEISRR-EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
+ +L + L + + + L + +AA P +++LF
Sbjct: 416 NDVTGKLMDLLVKNPTDLSSASEQLGLPLRKLGPLSR----RDAVGIAANPAVQRVLFNH 471
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
+ D + + + +++ + L++V V + + ++ +S A
Sbjct: 472 DFIQEGKVSD-PIQINPNHSVVLRVIAHTTEQQLPLDKVREQVVAAVRADRADKDGASAA 530
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
+ LV K G +++ K + + R F +FS +
Sbjct: 531 DALVARLQK-GDTLQEVAKAEKLQITPLTGLQRTAQVPAF---AATRAIFSALSPVAGKP 586
Query: 564 PIE----NGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ + Y VF VT G P ++K L Q+ + + + ++ ++
Sbjct: 587 TVGKVRLDDGRYAVFTVTRVIPGDLTKLPEEQKAMLRQQLDQIEGTLAVHAYVDMMRKRF 646
Query: 615 SVTVHDNLI 623
VT+H + +
Sbjct: 647 KVTIHKSQL 655
>gi|110680386|ref|YP_683393.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter
denitrificans OCh 114]
gi|109456502|gb|ABG32707.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter
denitrificans OCh 114]
Length = 612
Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats.
Identities = 108/596 (18%), Positives = 239/596 (40%), Gaps = 26/596 (4%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
T+ + G + +P + +QE+ + Q+ V+ ++A+ +GLD+ +L LV+
Sbjct: 32 SGNIRTIGTAGDKPIPVDDYFRQLQQEIRAVEQQTREVLPFQQAQQMGLDRAVLQRLVAT 91
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
+LD +GL + I F G + +F + + L + G++E E+
Sbjct: 92 RSLDHETSQLGLSIGDEELRRRILDISAFQGINGEFDREGYRFALEQTGLSEAEFETQLR 151
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215
+ ++RT V G +GG+ +D + E RS + +L+ + P +AVL
Sbjct: 152 EEVARTIVQGAVLGGIAMPETYVDTLVNYIGEQRSFTWSLLDASDLATPLGAPDDAVLRA 211
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
++ D + PE K+I+Y +E+ + L+ Y + ++ PE R VE+L
Sbjct: 212 HYDDNIDVFTLPETKQITYAWLTPDMLLDSVEVDEEALREAYAQQSAEFNQPERRLVERL 271
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
F +++ A +A +L G F L +G +L DI LG S+ + + + A
Sbjct: 272 AFLDRQSAQQAADALAAGDSFDDLVRGRGLALEDIDLGDVSEAELGEAG---AGVFAADV 328
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
G + G + V+ + + F++ + Q+ +AS V + ++ L
Sbjct: 329 GAVVGPFPSTLGPALFRVNAVLAAQETPFEDAIDLLRPQLAADRASRLVAAQAESFDDLL 388
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
A G ++++++ +V + + +++ + P
Sbjct: 389 AAGATLEDLASETDMVVAQIDWTAQSTEEIAAYP---------TFRQAAAAVGPRDFPEI 439
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
+L DG +++ +P R +E+ ++ W+ +TA+ ++ + V + G
Sbjct: 440 ASLDDGGLFALRLDTVLPPRPAPFDEIREEIIAHWEAAETAKRLAEQVAAQV-GLLENGS 498
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
+F D+ G + + R D + + VF+ V IE+ + ++ +
Sbjct: 499 SFADL----GLDAIVEENLIRSDFVPRT-PPGFLEDVFAMEVGK--AQVIESDAAVILVR 551
Query: 576 VTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + +Q + +D+ + + + ++ +Q
Sbjct: 552 LDAVAPPAADGDAAALRTQLEQQASQQLARDIFEVFANDVVLRADPQINQQALQAV 607
>gi|254994931|ref|ZP_05277121.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
str. Mississippi]
Length = 630
Score = 198 bits (501), Expect = 3e-48, Method: Composition-based stats.
Identities = 110/636 (17%), Positives = 232/636 (36%), Gaps = 28/636 (4%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
R L + F+ + V VG + + +++ EL
Sbjct: 2 RLRNVFVGAVLAAVLCAFVFVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELS 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
I + ++ + R G+ + L +V L++F +++ L + + I P+F
Sbjct: 62 YIESLVHQKLSEDDMR-FGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMF 120
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-----MRPSNLLLD 180
K K F LA G+ E YI L + + +
Sbjct: 121 QDKSGKLDEQRFKDLLADAGMTEASYIGKVRGSLPAFVLSECIFPRSGEVYSQYYDGFAQ 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++R+VD + ++ V + P+++ L + + N + S V
Sbjct: 181 DVLRGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMIVS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
E + E++ E E + + R V LVFP++ EA A++++K+GK F +
Sbjct: 241 EDDALDEVTAS--NDEVESEIKNSELHDQRDVLNLVFPSESEASAAYKAIKEGKAFEAVV 298
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
++ G ++ +++L + +KE +P +G+ + V G+ + + + P
Sbjct: 299 KDLGTTVEEVTLRNVTKELLPIEVRN--TVFDLNEGEVSGVFRSVVGWHVMKILSKHPIS 356
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLV 418
+++K+ +A ++ KA E ++ E ++ G + K L
Sbjct: 357 AKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKPAIGALKDF 416
Query: 419 DFAGKDVKGKEVAAIPYKEQL----LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
D G+D GK + K +Y V + P+
Sbjct: 417 DSNGQDSTGKSHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGNAYFSVIVTGVTPS 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R R +E + + WK E+ A+ L + G +G + I
Sbjct: 477 RTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKLKAGENP----GSAVGIATKKNENI 532
Query: 535 NRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLS-YVVFKVTNSKVG---PVQEKD 588
+R++ + + D + QVF + V I+ G + + + + K +E
Sbjct: 533 SRVNRKKGGSNYPEDLVDQVFEMRIGDVGEGVIDQGTNKIFIATLKDIKTPGQVNEKELK 592
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+F ++ T + ++++L ++Y V ++ L++
Sbjct: 593 EFQAHFTSSAISSIRRQLLSHLTNKYGVKINKKLLE 628
>gi|332141514|ref|YP_004427252.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
macleodii str. 'Deep ecotype']
gi|327551536|gb|AEA98254.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
macleodii str. 'Deep ecotype']
Length = 565
Score = 198 bits (501), Expect = 3e-48, Method: Composition-based stats.
Identities = 97/575 (16%), Positives = 208/575 (36%), Gaps = 29/575 (5%)
Query: 67 ISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ + G + S K +LD L++ + Q ++GL ++ I + P
Sbjct: 1 MESQYGESIAQLFSSEQYLADFRKNVLDRLIAEKLIQQQATNMGLRVSDEQIRETIVQMP 60
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
F +F ++ F + L + G ++ D+ +++ + + ++QA
Sbjct: 61 EFQ-FGGQFDNERFQAILRQNGFQVADFRDYLRTQMTQNQLAAALTNSSFALDGEVEQAN 119
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+ R+ Y+++++ + ++A + ++ ++ E +++Y+ V + +
Sbjct: 120 ALQRQTRNAKYVLVSSDEFADSIEVTDADIEAFYNNNIASFDTEEQVKLAYVKLSVEDLK 179
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------FQSLKKGKKF 296
++ + D ++ Y+ N Y + E R V ++ + D A + G F
Sbjct: 180 GRVSVDEDSVRTYYDNNLGSYGTEEQRRVSHILIEAGDDTDAAKAKAESLKAEIDSGADF 239
Query: 297 IQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LAE G F + D + ++ FSL GD + V+ FGY I +
Sbjct: 240 AALAEANSDDTFSAENGGDLDFITPEMMDPAFDEAAFSLENVGDVSDVVETEFGYHIIKL 299
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVS 412
+ +K + SF EV +I + + A EK E L E + ++D+ + +
Sbjct: 300 TEVKEAQVKSFDEVAGEIRDTLLYDAAMEKYFELQNTLAEIAFEVPDTLDDAANAVDLPI 359
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ L + + + + + L D + + ++ E
Sbjct: 360 QESVLFSRNTAPAELSSPGLL-----DVAFSSELVEEGLNSDIIELDDETVVVARVVEHQ 414
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
P R + L+EV ++ K K+ E S A V + + G++ D T
Sbjct: 415 PQRTQSLDEVREGIEASVKAEKSKEAAESWAFD-VAQKVRAGESVEDELAAKSVEWETAA 473
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQEK--- 587
+ R + +FS +E + V + P E
Sbjct: 474 NVQRAG---GTLARALVDTLFSLALEGDDQVDVATTVNGDVAVVMLEGVNPAPALESELG 530
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+ L Q+ + + I L++ VT+ + L
Sbjct: 531 ESLKQRLAQVQGQRVYQQYIDALRANAEVTISEAL 565
>gi|71066028|ref|YP_264755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
arcticus 273-4]
gi|71039013|gb|AAZ19321.1| possible PpiC-type peptidyl-prolyl cis-trans isomerase
[Psychrobacter arcticus 273-4]
Length = 624
Score = 197 bits (500), Expect = 4e-48, Method: Composition-based stats.
Identities = 101/641 (15%), Positives = 232/641 (36%), Gaps = 32/641 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++ +R ++W +I L++ P + G+ + + VG + S + +
Sbjct: 1 MDKLRDFLKSWPGRILLILCLSPLALLGVESYFGGNVDPNQIAQVGEASIGLSEYQTAVN 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ ++ ++ L +++L L+ L+Q +G+ + + +
Sbjct: 61 NRRTELLDQVD---DASLLNEDVLHEQVLKGLIDRTLLEQQAGKLGMTVSDDTINRLLRQ 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+F G+D +FS+D F S L + + + + + LS + VG + Q
Sbjct: 118 EEIFKGEDGEFSNDQFASFLRQRNMTKNQLFAEFRNQLSLDQLNASIVGTAAYPMKAVSQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E+R++ N + + + + + +++ KD ++ ++Y+ +
Sbjct: 178 LIDLQLESRNIWLHRFNWQDYVSQVKLNKSDIQAYYDANKDTLKSAAMVDLAYLQL-SPQ 236
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV---FPNQKEADEAFQSLKKGKKFIQ 298
+ E++ ++LQ +YE K+ + R + Q++ + AD+ L KG+ F +
Sbjct: 237 TIQVNEVTKEDLQQQYEAYKQSLAVVDERKISQILLTGSDAKARADKVKARLAKGEVFTK 296
Query: 299 LAEEQGKSLSDISLGSFSKEY----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+ + S + G + D + + GD + + SFGY I V+
Sbjct: 297 LAKTESDDPSGEAGGDIGRFNPSVFGNDAAAVEKALEGLSVGDVSVPVKTSFGYQIFTVT 356
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
S S + ++ D+ + + K E + + + A G S+++I+++E +
Sbjct: 357 EDSGSKIPSLESMRDDLTAKAKEYKRQEVYADKVTAINDLAADGFSIEDIAQQENVALKR 416
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
L + A I + + +G+ +WVQ P
Sbjct: 417 LKDYRKENNKSVLAQPAVIKQAFDEFTIQDQAVTAG-----IEVGNGT-VWVQPSNYRPT 470
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ L V + + K + A +L K DI K +T +
Sbjct: 471 KTLSLSAATPSVTQLLRQQKASALALKDAKKLAA----GIKTIADISKQS----VTFQAL 522
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVV---FKVTNSKVGPVQEK 587
++ + FS + + G + +V K ++
Sbjct: 523 GKISRQTTQLTEKERGLAFSKQAPEKGVVAVASETEMGATVLVGDRIKTEQQSPLSAAQR 582
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ + + + +D L + YL+ Y V ++ ++
Sbjct: 583 AQTAAIIRDNLGQDQLQDYLDYLRMVYKVEINKANMENAQG 623
>gi|93006476|ref|YP_580913.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
cryohalolentis K5]
gi|92394154|gb|ABE75429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
cryohalolentis K5]
Length = 624
Score = 197 bits (499), Expect = 5e-48, Method: Composition-based stats.
Identities = 102/641 (15%), Positives = 229/641 (35%), Gaps = 32/641 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++ +R ++W +I L++ P + G+ + + VG + S + +
Sbjct: 1 MDKLRDFLKSWPGRILLILCLSPLALLGVESYFGGNVDPNQIAQVGEASIGLSEYQTAVN 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ ++ ++ L +++L L+ L+Q +G+ + + +
Sbjct: 61 NRRTELLDQVD---DASLLNEDVLHEQVLKGLIDRTLLEQQAGKLGMTVSDDTINRLLRQ 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+F G D +FS+D F S L + + + + D + LS + VG + Q
Sbjct: 118 EEIFKGADGEFSNDQFASFLRQRNMTKNQLFDEFRNQLSLDQLNASIVGTAAYPMKAVSQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ N + + S + +++ KD ++ ++Y+ +
Sbjct: 178 LINLQLEARNIWLHRFNWQDYVSKVKLSKNDIQAYYDANKDTLKSAAMVDLAYLQL-SPQ 236
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV---FPNQKEADEAFQSLKKGKKFIQ 298
+ E++ ++LQ +YE K+ + R + Q++ + AD+ L KG+ F +
Sbjct: 237 TIQVNEVTKEDLQQQYEAYKQSLAVVDERKISQILLTGSDAKARADKIKARLAKGEAFAK 296
Query: 299 LAEEQGKSLSDISLGSFSKEY----IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
+A+ + S + G + D + + GD + + SFGY I V+
Sbjct: 297 VAKAESDDPSGETGGDIGRFNPSVFGNDAAAVEKALEGLSVGDISVPVKTSFGYQIFTVT 356
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ S + ++ D+ + + K E + + + A G S+++I+++E +
Sbjct: 357 EDNGNKIPSLESMRDDLIAKAKEYKRQEIYADKVTAINDLAADGFSIEDIAQQENVSLKR 416
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
L + A I + + +G+ +WVQ P
Sbjct: 417 LKDYRKENNKSVLAQPAVIKQAFDEFTIQDQAVTAG-----IEVGNGT-VWVQPSNYRPT 470
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ L + + + K +E + A +L G G + +I
Sbjct: 471 KTLSLTAATPRITQLLRQQKASELALNDAKKLAA-----GIKTTADINKQGVTFQALGEI 525
Query: 535 NRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGLSYVV-----FKVTNSKVGPVQEK 587
NR + FS P V + + V K ++
Sbjct: 526 NRQTTQLTEKERGL---AFSKQAPENGVVAVASKTEMGATVLVGDRIKTEQQSPLSAAQR 582
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ + + + +D L + YL+ Y V ++ ++
Sbjct: 583 AQTAAIIRDNLGQDQLQDYLDYLRLVYKVEINKANMENAQG 623
>gi|332971823|gb|EGK10770.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
1501(2011)]
Length = 624
Score = 197 bits (499), Expect = 5e-48, Method: Composition-based stats.
Identities = 105/640 (16%), Positives = 233/640 (36%), Gaps = 34/640 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E IR ++W +IFL++ P +I GL + ++ V +VG Q + + + ++
Sbjct: 1 MESIRNFLQSWPGRIFLMLCLSPLVILGLESYFTGSANANDVATVGDQTITRAEYQDAIN 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ Q V + + L++++L L++ A L +G+ + + +
Sbjct: 61 TRRNELLQN---GVEASAINTNALNREVLKGLINRALLRNQSGQLGMHVSDKVINDLLLQ 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F ++ +FS+D F L ++G+ + + D Y + L+ + ++
Sbjct: 118 DPQFLDENGQFSNDRFAFSLQQQGMTKDQLFDQYRQQLNLMQLYAGVAQTAIYPESEIND 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R V L S + ++ ++K++ + ++YI
Sbjct: 178 LLALQLETRDVWVYRLPWEQYKDKVSVSAKEIENYYNEHKNDLNSVAMVDLAYIQL-DPA 236
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV---FPNQKEADEAFQSLKKGKKFIQ 298
K +++ E+QA+Y+ K Y + + Q++ ++ + + LK+G+ F
Sbjct: 237 KVAVDKVTEKEIQAQYDAFKANYKGAANQKLSQILITGDKAEQTIQQIQKRLKQGESFAA 296
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLAD-----SIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA++ + + G + PDV AD K + + SFGY + V
Sbjct: 297 LAKQYSEDPISAAKGGDIGTFNPDVFGADGAKVAKAIEGLNKDQISAPVKTSFGYQLFKV 356
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ + S +++++ Q + K + + + R+ E G +++I+++E++
Sbjct: 357 TEMSGDSVPSLASMREELVAQAQRQKREQLIADKITRINEMAIDGVGIEDIAQQEELTVQ 416
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ G + A I + +WVQ P
Sbjct: 417 KIKNYTKVGNKTALGQPAVIDAAFDDFA------LQDESVSASIKVNNGTIWVQPTNYRP 470
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+ L++ D+K K E+ + A + + +G + + A+ +
Sbjct: 471 VKPLTLQQASADIKNILVKQKATEQALAAARNISKTVNDKG------MQAVQANFKSLGN 524
Query: 534 INRMDNENKFFGYDGISQVFSGPV--EMVKCFPIENGLSYVVFKVTNSKVG-----PVQE 586
INR + FS + V + G P E
Sbjct: 525 INRKNPLLSTDEQAI---AFSKDSTNGKQLAVSEKTKEGATVLVLGPISKGSMKDVPAAE 581
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + + ++ + YLK V ++ +I
Sbjct: 582 LSQAMFDMRSIRGQEYFSDYLEYLKGATKVEENEKVINEV 621
>gi|255004191|ref|ZP_05278992.1| peptidyl-prolyl cis-trans isomerase D (ppiD) [Anaplasma marginale
str. Virginia]
Length = 630
Score = 197 bits (498), Expect = 7e-48, Method: Composition-based stats.
Identities = 109/636 (17%), Positives = 232/636 (36%), Gaps = 28/636 (4%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
R L + F+ + V VG + + +++ EL
Sbjct: 2 RLRNVFVGAVLAAVLCAFVFVTFGSVLPFGGTASDRCVAKVGSSCLSLREYSMAYRGELS 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
I + ++ + R G+ + L +V L++F +++ L + + I P+F
Sbjct: 62 YIESLVHQKLSEDDMR-FGVKEMTLSRMVDDMVLEKFAKELNLRVSNKSIRDLIGDMPMF 120
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-----MRPSNLLLD 180
K K F LA G+ E YI L + + +
Sbjct: 121 QDKSGKLDEQRFKDLLADAGMTEASYIGKVRGSLPAFVLSECIFPRSGEVYSQYYDGFAQ 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R ++R+VD + ++ V + P+++ L + + N + S V
Sbjct: 181 DVLRGIMQSRTVDIVEISQSAVENTSTPTDSDLEAMYNEGTKNGELIMPEYRSAEYMIVS 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
E + E++ E E + + R V LVFP++ EA A++++K+GK F +
Sbjct: 241 EDDALDEVTAS--NDEVESEIKNSELHDQRDVLNLVFPSESEASAAYKAIKEGKAFEAVV 298
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
++ G ++ +++L + +KE +P +G+ + V G+ + + + P
Sbjct: 299 KDLGTTVEEVTLRNVTKELLPIEVRN--TVFDLNEGEVSGVFRSVVGWHVMKILSKHPIS 356
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE--KIVSIDLPLV 418
+++K+ +A ++ KA E ++ E ++ G + K L
Sbjct: 357 AKDLKKLKEKVAMSIKRQKARELFSASIRKANEMISHGATSFSEVADVFKKPAIGALKDF 416
Query: 419 DFAGKDVKGKEVAAIPYKEQL----LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
D G+D GK + K +Y V + P+
Sbjct: 417 DSNGQDSTGKSHTYAEESSFPGIVGALPPLAFSSQVGKPSHFVSIGNAYFSVIVTGVTPS 476
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R R +E + + WK E+ A+ L + G +G I
Sbjct: 477 RTRTFDESKSLLLDKWKNAFVVGEMLKLASDLTAKLKAGENP----GSAVGIVTKKNENI 532
Query: 535 NRMDNE--NKFFGYDGISQVFSGPVEMVKCFPIENGLS-YVVFKVTNSKVG---PVQEKD 588
+R++ + + + D + QVF + V I+ G + + + + K +E
Sbjct: 533 SRVNRKKGSSNYPEDLVDQVFEMRIGDVGEGVIDQGANKIFIATLKDIKTPGQVNEKELK 592
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+F ++ T + ++++L ++Y + ++ L++
Sbjct: 593 EFQAHFTSSAISSIRRQLLSHLTNKYGIKINKKLLE 628
>gi|163731980|ref|ZP_02139426.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter
litoralis Och 149]
gi|161394278|gb|EDQ18601.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter
litoralis Och 149]
Length = 612
Score = 196 bits (497), Expect = 9e-48, Method: Composition-based stats.
Identities = 108/596 (18%), Positives = 239/596 (40%), Gaps = 26/596 (4%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
T+ + G + +P + +QE+ + Q+ V+ ++A+ +GLD+ +L LV+
Sbjct: 32 SGNIRTIGTAGDKPIPVDDYFRQLQQEIRAVEQQTREVLPFQQAQQMGLDRAVLQRLVAT 91
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
+LD ++GL + I + F G + +F + + L + G++E E+
Sbjct: 92 RSLDHETSELGLSIGDEELRTRILQISAFQGINGEFDREGYRFALEQTGLSEAEFETQLR 151
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215
+ ++RT V G +GG+ +D + E RS + +L+ + P +A+L
Sbjct: 152 EEVARTIVQGAVLGGIAMPETYVDTLVSYIGEQRSFTWSLLDASDLATPLGAPDDAILRA 211
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
++ D + PE K+I+Y +E+ + L+ Y + ++ PE R VE+L
Sbjct: 212 HYDDNIDVFTLPETKQITYAWLTPDMLLDSVEVDEEALREAYAEQSAEFNQPERRLVERL 271
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
F + + A +A +L G F L +G +L DI LG S+ + A + A
Sbjct: 272 AFLDTQSAQQAADALTAGDSFDDLVRGRGLALEDIDLGDVSEAEL---GAAGAGVFAADV 328
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
G + G + V+ + + F+E + Q+ +AS V + ++ L
Sbjct: 329 GAVVGPFPSTLGPALFRVNAVLAAQETPFEEAIDVLRPQLAADRASRLVAAQAESFDDLL 388
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
A G ++++++ +V + + +++ + P
Sbjct: 389 AGGATLEDLASETDMVVAQIDWTAGSTEEIAAYP---------TFRQAAASVGPRDFPEI 439
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
+L DG +++ +P R +E+ ++ W+ +TA+ ++ + V + G
Sbjct: 440 ASLDDGGLFALRLDTVLPPRPAPFDEIREEIIAHWEAAETAKRLAEQVAGQV-GLLENGS 498
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
+F D+ G + + R + + +VF V IE+ + ++ +
Sbjct: 499 SFADL----GLDAIVEENLIRSGFVPRT-PPGFLEEVFDMEVGK--AQVIESDAAVILVR 551
Query: 576 VTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + +Q + +D+ + + + ++ +Q
Sbjct: 552 LDAIAPPAADGDAAALRAQLEQQASQQLARDVFEVFANDVVLRADPQINQQALQAV 607
>gi|332524209|ref|ZP_08400435.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
[Rubrivivax benzoatilyticus JA2]
gi|332107544|gb|EGJ08768.1| putative peptidyl-prolyl cis-trans isomerase transmembrane protein
[Rubrivivax benzoatilyticus JA2]
Length = 635
Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats.
Identities = 105/650 (16%), Positives = 219/650 (33%), Gaps = 45/650 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL-FSVSGSSTVVSVGRQKVPFSSFINS 59
M + +R SR + + L++ F+ +G+ F+ G+ TV VG Q + + + +
Sbjct: 1 MFDFVRNHSRLVLGILVLLIF-PSFIFFGVQGYSRFTEGGAVTVAEVGGQAISRAEWDAA 59
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ + + ++ ++ + + L ++ LD LV L L D R+
Sbjct: 60 HQNNIERLRRQ-RPELDPKLLETPELKRETLDGLVRDRVLMATARQYHLVPDDARLQRLF 118
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F V LA +G++ + + + V+G +
Sbjct: 119 VTDPQF-AGLRNPDGSVNREILAAQGMSVEAFEQQLRQEFGMQQVLGAVAQSSFTPPAVA 177
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ + R V + A A P +A L ++E + +RAPE +I Y++ D+
Sbjct: 178 ATSLDALLQRREVQIQRFDAAAYRAQATPGDADLQAYYEAHSGEFRAPEQAQIEYVVLDL 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K + + ++L+ YE+N +Y E R ++ A + K + L
Sbjct: 238 AALAKDVAVPEEDLRRYYEENASRYTQAEERRASHILIRVDPSAPADEKKAAKARAEQLL 297
Query: 300 A-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
A ++ G + L F + + + K G+ + VI
Sbjct: 298 AEVRRSPNSFAEVARKNSQDPGSASRGGDLDFFGRGMMAKP--FEDAVYAMKTGEISNVI 355
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
FGY + ++ ++ +F V+ +I ++R + A ++ E + + +
Sbjct: 356 ETDFGYHVITLTGLRGGQKKAFDTVRAEIEQEVRRSLAQKRYAEAAETFTNTVYEQSDSL 415
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPD 460
+ + + L + +LL VF D +K +T V +
Sbjct: 416 QPVIDK----LKLQKQTATVLRQPAPGASGALASAKLLDAVFSDDVVRNKRNTDAVEIGQ 471
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ +I PAR L EV V++ K+A ++ + + K I
Sbjct: 472 NQLVSARIVTHSPARTLPLAEVRDQVREAVVAQKSAALAKAEGAKRLEALKKSPNEALPI 531
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
+ + + I V + + + Y V +V+
Sbjct: 532 S------------LTLSRAQPQGAPRAVIDAVLRADTKQLPAIVGVDLGSQGYAVVRVSK 579
Query: 579 S--KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ L Q + + LK + + + +Q
Sbjct: 580 VLQREADPATDAMLQQQLAQTWATAEALAYLDALKRRTKAEIKEAAVQAA 629
>gi|148653423|ref|YP_001280516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
PRwf-1]
gi|148572507|gb|ABQ94566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
PRwf-1]
Length = 624
Score = 196 bits (496), Expect = 1e-47, Method: Composition-based stats.
Identities = 101/640 (15%), Positives = 227/640 (35%), Gaps = 34/640 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E IR ++W +IFL++ P +I GL S + V VG Q + + + +
Sbjct: 1 MESIRNFLQSWPGRIFLMLCLSPLVILGLESYFSGASSVNEVAKVGDQTISRAEYQDGLN 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ Q V + + L+ ++L L++ A L + +G+ + + +
Sbjct: 61 GRRNELLQ---GGVEASAINTQALNSEVLKGLINRALLRNQTDHLGMHVSDAAINNLLLQ 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P + ++ +FS+D F L ++GI + + Y + L+ + +
Sbjct: 118 DPQYLDENGQFSNDRFAFALQQQGITKDQLFAQYRQQLNLMQLYASVAQTAVYPESQIHD 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R V L S+ ++ ++ + K + ++Y+
Sbjct: 178 LLALQLETRDVWVYRLPWEQFKDKVSVSDKEISDYYNENKSKLNSRAMVDLAYVSL-DPS 236
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF---QSLKKGKKFIQ 298
K +++ ELQA+Y+ K ++ + V Q++ K Q LKKG+ F
Sbjct: 237 KLPVEKVTQAELQAQYDDYKARFVGNSKQKVSQILVTGSKAEATMQQIEQRLKKGESFAA 296
Query: 299 LAEEQGKSL----SDISLGSFSKEYI-PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+A+E + +G+F+ + D S +KG+ + + SFGY + V
Sbjct: 297 IAKELSEDPVSAAKGGDIGTFNADAFGADGQKVAQALSGLEKGEVSAPVKTSFGYQLFKV 356
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
++ S + ++ ++ Q + K + + + + + G +++I+++E +
Sbjct: 357 TDKSGDSVPSLESMRDELTAQAQRQKREQLIADKITSINDMATDGVGIEDIAQQEGLTVH 416
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ + + + I + +WVQ P
Sbjct: 417 KIKNYTKLNNNTELNQPVVIEAAFDDFA------LQEESVSPGIKVNTGTVWVQPTNYRP 470
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+ L + +K K A++ ++A +L + G +
Sbjct: 471 IKPLTLAQASAQIKSTLVKQKAAQQAMAQAKRLSETVNNSGMS------AAKVPFKALGT 524
Query: 534 INRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGLSYVVFKV-----TNSKVGPVQE 586
INR + + FS P + V + + K P E
Sbjct: 525 INRQNPQLSMDEKAI---AFSKTTPAGKQVAVAEKTSSGATVLVMGSISKASIKDVPAAE 581
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + + ++ + YL+ + ++ +I+
Sbjct: 582 LSQAMFDMRSIRGQEHFSDYLEYLRGATKIEKNEAVIKEI 621
>gi|332529107|ref|ZP_08405071.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
ATCC 19624]
gi|332041330|gb|EGI77692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
ATCC 19624]
Length = 647
Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats.
Identities = 95/654 (14%), Positives = 221/654 (33%), Gaps = 50/654 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E +RK ++ + + ++++ F++ G+ V VG+ ++ + +
Sbjct: 1 MFENLRKHNK-ILMAVLVLLIVPSFVLVGIDGYTRMTQKDRVVAHVGKIEITQGEWDAAH 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E + Q + +++ S + +L+ ++ L Q D L R++ E+
Sbjct: 60 RSETDRLRQMM-PNLDARLLDSDAARRGVLERMIRERVLQQAALDAQLNVSDARLFQELQ 118
Query: 121 RSPL---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P K + + + LAR+G++ + L+ + G +N
Sbjct: 119 TIPAISQLRNAQGKIDMEAYQALLARQGMSPAGFEAQLRADLAVNQIQSSVTGTAVQTNT 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D A + E R V S A L +++ + ++APE RI YI+
Sbjct: 179 SADLALDAWLERREVQVARFTPADYATRVQVSEADLQAYWQANQGLFQAPEQARIEYIVL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ K+ ++ ++L+ YE+N ++ PE R ++ K+A A + + +
Sbjct: 239 DIDALRKEARVNEEDLRNYYEQNVDRLSGPEERRASHILITAAKDAPAAERQKAREQAQA 298
Query: 298 QLA----------------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
LA ++ G + LG F ++ + + K+
Sbjct: 299 LLAELRKAPANAQAKLFAELARKHSQDPGSASRGGDLGYFGRKAMTLP--FEEAAFALKQ 356
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-F 394
G+ + V+ FGY + V+ IK ++ E++ + ++R +A + E +
Sbjct: 357 GELSDVVETDFGYHVITVTGIKKPKAKTYAELRPSLEAEIRSQQAQTRYAEAAEAFTNGV 416
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
S+ ++ + ++ + + + +
Sbjct: 417 YEQPDSLKPVADQLRLSIQTATVSREPAQVTADAQGVLTNARLLSAVFSDDAIQAKRNTE 476
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
V + ++ + +PAR L EV V++ + + A+ + +
Sbjct: 477 AVEISPSRLAAARVVQHLPARTLPLAEVQAAVRERVVSARAAQLAREDGQAKLAAWK--- 533
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-----SGPVEMVKCFPIENGL 569
A L ++R N + V S V
Sbjct: 534 ------ATPAQAKLGAAEVVSRDQARN--LPRALLDAVLRADLQSAATNPVWVGTDLGEQ 585
Query: 570 SYVVFKVTNSKVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
Y++ +V ++++ Q + ++ L+ + +
Sbjct: 586 GYILARVNRRIERAPAVEPGQQNQQRLQYLQWWTQAENEAYYQLLRQRLKTRID 639
>gi|319941578|ref|ZP_08015904.1| hypothetical protein HMPREF9464_01123 [Sutterella wadsworthensis
3_1_45B]
gi|319804948|gb|EFW01790.1| hypothetical protein HMPREF9464_01123 [Sutterella wadsworthensis
3_1_45B]
Length = 633
Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats.
Identities = 103/635 (16%), Positives = 228/635 (35%), Gaps = 34/635 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ R+ R W+ I +V + F++ G+ +++V VG + +F +
Sbjct: 1 MLQAFREHKR-WLMVIAMVFIIPSFVVTGIYSYNRMTQSDNSIVKVGEVSITPENFDLAK 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+L + Q++G ++ + + +L L+ A ++Q + + + I
Sbjct: 60 RQQLERLRQEMGESFHASLLDTPQAREDLLRMLMDEAAINQVVAKNHISVSEAQAVALIK 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ D KFS + + L +G ++++++ L++ VV L +
Sbjct: 120 NADALKV-DGKFSAERYEQFLRSQGKSDQQFVMEIRNDLAKEAVVSGVSATYPVPKALTE 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q E RSV +VL ++ + ++ + ++ +PE+ + Y+
Sbjct: 179 QFYEILTEERSVRTLVLPADDYLDKVAVTDEEIKAYYNAHLKDFLSPEHIKAQYV-VFSP 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--------K 292
+ + S D+L+ YE+NK+++ PE R ++ + + A + +
Sbjct: 238 DAFSNQKASLDDLKTFYEQNKQRWTVPEERRASHILIEFGDDKEAARKKAEELANEVKAD 297
Query: 293 GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
KF +LA+ L F + + + AKKGD I FG+
Sbjct: 298 PSKFAELAKANSVDTGSAEQGGDLSFFGRGVMTKA--FEDAVFNAKKGDIVGPIETEFGW 355
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRR 407
+ +V++I P+ F++VK +I + +A + +++ + +
Sbjct: 356 HVIYVTDIHPAAVEPFEDVKSEIEREYAQQQAIREFSTHADEFTNLVYEQSDTLEPAAAK 415
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ V G + + LF + + + + + +
Sbjct: 416 FGLKVETADFVTRNGVTDPELSQIITEHVAESLFGTEALKEKRNTS-AIEVSGNRLVSAR 474
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ E P +R L+EV + K K + + K+ G +
Sbjct: 475 VVEYFPEAERPLDEVKGLITDALKRQKAGAMAIEAGQAKLASVQQA-KSVDGFGDEM--- 530
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNSK--VGP 583
I+R +N+ ++ + P + + SYVV V +K
Sbjct: 531 -----WISRRAPQNQEVT--VVNAALAVPTAKLPIYTNAVLADGSYVVIYVKEAKKHEAK 583
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
++ L+ + + + L+ V V
Sbjct: 584 PEDLAGITRELSSVYGESDRRGYLDALEHSLGVVV 618
>gi|126735661|ref|ZP_01751406.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
CCS2]
gi|126714848|gb|EBA11714.1| peptidyl-prolyl cis-trans isomerse D, putative [Roseobacter sp.
CCS2]
Length = 612
Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats.
Identities = 106/621 (17%), Positives = 238/621 (38%), Gaps = 32/621 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
A I + V+ + +G + +VG + V S+ + +++ +S + G
Sbjct: 11 AWIIVGVILLGLAGFGTGGL---SGNIRNIGTVGDKDVTVVSYQRALNEQIRALSAQFGQ 67
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
++ ++A++ G+D+ L +V TLD ++G+ RV+ + P F G F+
Sbjct: 68 QISFQQAQAFGIDQVALSQVVLLRTLDNEASELGISVGDERVFDRLQTIPSFQGAGG-FN 126
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + L + G E+ + + +RT + G V G+ + D +F E RS+
Sbjct: 127 RETYRLSLQQSGQTAAEFENGIREETARTLLQGAVVSGVPAPDAYADALVQFISETRSIT 186
Query: 194 YIVLNNRHVPAIAD-PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ V++ + A + A ++++ + PE + I+Y+ + + +++
Sbjct: 187 WAVVDAGDLTAPVPGATEAAQQEYYDANPAEFTLPESRDITYVWLTPNMIIDDMVVADAA 246
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDIS 311
++ Y + ++ PE R VE+LV+ +Q A +A + G+ F L E+G L+DI
Sbjct: 247 VEQLYNQRIAEFVQPERRLVERLVYLSQDRAADAMARVNAGEATFEDLVAERGLRLTDID 306
Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
LG S++ + A+ G + G + ++ + + + +E +
Sbjct: 307 LGDVSQDDLGSAG---EAVFAAETGTVVGPFNSPLGPALFRMNAVLAAQEIPLEEAAPRL 363
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
+++ A E + + + LA G +M +++ R + + +A
Sbjct: 364 RDELATDAAREFINSSADPIIDLLAGGATMADLAERTDMRLGTINWT-----PDNTDGIA 418
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
A + V P L DG + + +P + +E+V + W+
Sbjct: 419 AYDAFRREAAAVQDAQFP----EVFDLADGGIFALSLDGIVPPTLQPIEDVRDALAAAWQ 474
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ + +KA ++ + LG + + R Q
Sbjct: 475 AQAQQDAIMAKAEEISADIL-----PLTGFDTLGLDPIVEENLTRRTFLEGT-PPSFNDQ 528
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV------QEKDKFISYLTQMMNKDLLDS 605
VF V V+ EN ++ ++ + + ++D + +D+ D+
Sbjct: 529 VFEMAVGDVRVLDAENRA--LIVRLDDIAAPDLSDEAVIAQRDAVAENTRAGIAQDIFDA 586
Query: 606 VIAYLKSQYSVTVHDNLIQRY 626
L+ + ++ I
Sbjct: 587 YATELQQRTEQRLNQQTIDAV 607
>gi|260577282|ref|ZP_05845256.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacter sp. SW2]
gi|259020526|gb|EEW23848.1| putative peptidyl-prolyl cis-trans isomerse D [Rhodobacter sp. SW2]
Length = 625
Score = 195 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 120/606 (19%), Positives = 233/606 (38%), Gaps = 27/606 (4%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
+G+++ SG S + +VG +K+ + + + +QEL S ++G V+ + G+D+
Sbjct: 35 FGVTNF---GSGVSEIGAVGDRKIDVNQYARALQQELAAFSAQVGSTVSLQEGIERGIDR 91
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++ L+ A LD + IGL RV E+A F G F + + + L +
Sbjct: 92 QVRQQLLIAAALDNEADRIGLSVGDARVARELAGMAAFQGAGGSFDRETYRATLKNNSLT 151
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
E ++ + LSR+ + G GG+ L D F E R + L +
Sbjct: 152 EADFEGNLRDDLSRSLLQGAVSGGIVAPAALTDTLYSFIAERRGFSLLRLTEADLKTAVP 211
Query: 208 -PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
P+ A L + + PE +RI+Y + + L+A Y+ +++
Sbjct: 212 APTEADLQAHYTANLPAFTKPEARRITYAALFPATLATTMPVDEAALKALYDSRIDEFVQ 271
Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
PE R VE+LV+P + +A A L G F L E+G +L I +G K +
Sbjct: 272 PEKRLVERLVYPTEADATAARAKLDAGTPFETLVAERGLTLEAIDMGDVGKADLGAA--G 329
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
+++F+L + G + G + ++ I + VSF++ + + M+ A + +
Sbjct: 330 EAVFALTEPGVVG-PLATDLGPALLRMNAILAAQNVSFEDARDTLVPDMQQDAARRAIGD 388
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+ +++ LA G S++++ + + + V + + ++E V
Sbjct: 389 KLEAIDDALAGGASLEDLGKEFGMAVASIDFVPEVPAEGEDAITGYPAFREAATQAV--- 445
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
TV L DG + +++ E +PA L++ V W+ + +
Sbjct: 446 --EGDFAQTVQLDDGGVVALRLDEIVPAAPIPLDQAQEAVTASWRKA-AVAQALAARAAE 502
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ + G D G +T I R + D +S VF P V
Sbjct: 503 IKAAVEGGDTLAD----YGTPAVTPE-IARDGFV-EGAPADILSTVFKLPQAGVGLVQGP 556
Query: 567 NGLSYVVFKVTNSKVGPVQE------KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ + +V + K + + Q + +D L + + +
Sbjct: 557 DFTG--LVQVDSITPAAASGEAADALKASLNAQIEQALAQDAFLMFSNTLAQTAGIRLDE 614
Query: 621 NLIQRY 626
I
Sbjct: 615 AAINAV 620
>gi|114799881|ref|YP_760495.1| peptidylprolyl cis-trans isomerase-like protein [Hyphomonas
neptunium ATCC 15444]
gi|114740055|gb|ABI78180.1| peptidylprolyl cis-trans isomerase, homolog [Hyphomonas neptunium
ATCC 15444]
Length = 637
Score = 195 bits (493), Expect = 2e-47, Method: Composition-based stats.
Identities = 98/632 (15%), Positives = 231/632 (36%), Gaps = 15/632 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL--FSVSGSSTVVSVGRQKVPFSSFIN 58
ML +++K +R+ V K+ L+++ V WG+ + + VVS G + + +
Sbjct: 1 MLALMKKMTRSPVGKLVLMIVIVGMAFWGVDAIVNQMRSGLGANVVSAGSRGLDPADLDF 60
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ L I+ ++ A GL +I++ + T + E IG+ V E
Sbjct: 61 RVETVLRNINATAERPLSKSEALEQGLIDQIVEVEKARITRLGYGESIGISPSPEAVVEE 120
Query: 119 IARSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ P F + +F R+++ G++ ++ + + + +
Sbjct: 121 MNSIPAFQNPLTGELDPAMFRDRISQLGMSPAQFERQLQDDILIRALSQAGRSAVYGPQV 180
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + E R V + + PA P++A + +++++ + + PE + + +
Sbjct: 181 IANIQANYLGETREVAWFFFDASDAPAPEVPTDAEIKAYYDEHLERLKQPERRALDILRM 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ K+E+++ E+ YE K + +Q + G
Sbjct: 241 STDDFTGKVEVTDQEVATVYEATKSE----RFAAPDQRTYAELLFPTRDAARTAFGLLAG 296
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF-SLAKKGDFTPVIHGSFGYVIAHVSNI 356
+ + + + E I D +L D++F + G +++A + ++
Sbjct: 297 GADPNSVTGANSVQMRTARAEDISDQALQDAMFGPGRQSGAMYGPREVDGQWLVARLISV 356
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+P +EV ++I + +A + L+E LA G + +++ + I +
Sbjct: 357 QPGAVKPLEEVAEEIRLGLARERAQLLFSAALETLDEALAAGNDLSQVAEDIGVPIISIA 416
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
VD G +G + + + L + F P ++ + S + V + +PA
Sbjct: 417 PVDQNGITEQGNQFTILSEVPEALPQAF--RLPENEIGSRFDVASSVVLVAPRRIVPAAT 474
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQIN 535
+L+ + V + +TA + L GA + ++
Sbjct: 475 PELDAIKDRVSAMIVSERTANAAEAAVEALTERVRAGSVTLDAAAAESGAQVDRLPEPVS 534
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF----I 591
R + + + F+ P V P +G + + K+ + +
Sbjct: 535 RSNAQAMGVPGPLMQATFNNPAGSVISLPTGDGSVFAILKILSVSPPTPEMIASMGTAAS 594
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ +T+ + DL +V ++ V + + I
Sbjct: 595 ADVTESLTADLEAAVDDEIRRAVKVKENASAI 626
>gi|332185866|ref|ZP_08387613.1| hypothetical protein SUS17_824 [Sphingomonas sp. S17]
gi|332014224|gb|EGI56282.1| hypothetical protein SUS17_824 [Sphingomonas sp. S17]
Length = 650
Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats.
Identities = 112/640 (17%), Positives = 227/640 (35%), Gaps = 16/640 (2%)
Query: 1 MLEIIRKASRT----WVAKIFLVVLFVPFLIWGLSD--ALFSVSGSSTVVSVGRQKVPFS 54
ML R+ + V I L V+ + F +S+ + STV VG KV
Sbjct: 1 MLSFFRRIINSKAGVIVTFIVLGVIAIAFAAGDVSNIAGMAGGLTGSTVAKVGSAKVTVD 60
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ + E+ Q+ ++ + + G + +L V+G +L+QF +D G+
Sbjct: 61 DLRTAAQNEVAAYRQE-QPTLDMAQFIAAGGFEGVLQREVTGLSLEQFGKDQGMVVSRRL 119
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
V G+IA P F G + +F ++ LA+ + + + + L + +G +
Sbjct: 120 VDGQIASIPAFRGPNGQFDPALYQQLLAQRKMTDAQVRTDLQRTLFAQQLTVPTIGATQM 179
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
++ + E R + + R V A PS+A + ++ + Y PE + + Y
Sbjct: 180 ASQMALPYASLLLEKRQGEVGYIPTRLVNAGGAPSDADIQTFYSRNVQRYTLPERRVVRY 239
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
L + ++ E+ Y+ N +Y + + R V Q++ +Q A+ K G
Sbjct: 240 ALVTPSAIAAQSAPTDAEIARYYQTNAARYAATQKRDVTQVIVADQAGANALATRAKGGA 299
Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
+ A G S + A +G I G G+V+A V
Sbjct: 300 SLAEAARAAGLEASVQKGVDKATYATQSAPAVADAVFGAAQGAVVGPIRGPLGFVVARVD 359
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + + + +I ++ K + + E +E+ L+ + DE+ K+ +
Sbjct: 360 AVTQVPGKTLAQARPEIVTELTKQKQTAALGEMRNAIEDSLSGNATFDEVIADRKLQAQA 419
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
P V G + ++ F +D + DG + V + + +
Sbjct: 420 TPAVTAQGAAPDAPAFQPSAEQRAMITAAFTAEDGDAPQIVPIGQDGGFAVVGVGQIQRS 479
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R L +V V D + AN ++ + +K G K G ++ I
Sbjct: 480 APRPLAQVRQQVIADLTADRARAAARKLANAVLAKVNK-GMPMAQALKETGLAVPPVRPI 538
Query: 535 --NRMD--NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK--- 587
+R D ++ +FS P K + + +VT G
Sbjct: 539 AASRRDLAAAQNTPAAAPLALLFSMPQNKAKTLEAPANEGWYIIRVTKIDAGNATGNAAA 598
Query: 588 -DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ +++ ++ + ++ V + +
Sbjct: 599 IQAARQDIGRLIGREYVSQFARAVRDTVGVKTDPKAVAKV 638
>gi|332851740|ref|ZP_08433665.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
gi|332865885|ref|ZP_08436665.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
gi|332729747|gb|EGJ61082.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
gi|332734935|gb|EGJ66021.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
Length = 621
Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats.
Identities = 103/634 (16%), Positives = 218/634 (34%), Gaps = 31/634 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ LV+ P + G+ + + +V Q + +
Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + + K LD LVS L Q E +G+ ++ +A+
Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P ++ +FS ++ + L G+ + I + + + F S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + SN T ++ K+++ ++ P + Y++
Sbjct: 178 IANLQTEQRTLHLASIKLDPYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------SLKKG 293
K ++ EL+ Y K E R V+ ++ D A Q ++ G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F Q A + + + + G + Y P D K G + + +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQISQPVKTQYGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + SF+ K + ++ K + + L E + S+D + +++
Sbjct: 358 EA-ETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLD--AVVQQVK 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ + ++ P + LF K+ + + L +G +WV++++
Sbjct: 415 GTKIESLNGVTLATQNPYLSD-PNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDY 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
A + L + + +VK K + +K ++ E+ + + + +
Sbjct: 474 HAAGVKPLTQAMNEVKAKVIDEKARKAAQAKIATMLTEFKT--QPAEQVVAKNKVAFESA 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM-----VKCFPIENGLSYVVFKVTNSKVG---P 583
R ++ FS P V + N L V NS P
Sbjct: 532 GVFTR----SQGLKRAIERAAFSVPTPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAMP 587
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q + +L+ YLKS +
Sbjct: 588 ADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621
>gi|323143442|ref|ZP_08078125.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066]
gi|322416727|gb|EFY07378.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066]
Length = 642
Score = 193 bits (489), Expect = 7e-47, Method: Composition-based stats.
Identities = 98/641 (15%), Positives = 216/641 (33%), Gaps = 26/641 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML + +R+ ++ + KI ++ + F+ G+ L + V VG K+ + +
Sbjct: 1 MLTDKLREGAQGRIFKILFWIIILSFIFTGVGGYLIPRLNTDPV-EVGEYKITANEWNQQ 59
Query: 60 WKQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ + + + G + L +IL+ ++ + + D+ + +V
Sbjct: 60 YTSQTQQMQRMYGARYADMLEDPQYVSNLRSQILEGMIDNVAFNSAVYDLNVRIGDEQVR 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPS 175
I +P F KD KF +D++++ + G+N + + + T V + P
Sbjct: 120 ELIRTTPAFQ-KDGKFDNDLYLAVIRNMGMNPEYFGEQMRISAMATSVSDPILRTASYPL 178
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + + R++D LN + A + +++ + D + AP + +YI
Sbjct: 179 PYEISALENLLTQTRTIDLYELNLDALRAGFSADDNEAKAYYDAHHDAFMAPANVKFNYI 238
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF-----QSL 290
L V E +K I ++DEL+ +++ + PE R ++ + E
Sbjct: 239 LLTVDELKKGINPTDDELEEYLTLHQDDFKVPEHRGFSHIIVRSDNPDAEKIVKSIDDGF 298
Query: 291 KKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
GK F LA+E LS +G + + AD +F+L G T I +
Sbjct: 299 AAGKSFADLAKEYSDDLSTKDIGGDMGEIIRASLA-PIFADKLFALETIGSHTDKIVDAD 357
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G +++I E+K + N KA E E L + +
Sbjct: 358 GTHYLQLNSIVKEHIPQLNEIKDQVKNACIDAKARELFNERVTTLSDMSFENPDSLD--V 415
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + + Q V + D + + +
Sbjct: 416 TADALGVTVADSGVVALGATKVPWPLNTSMVQNAAFSEENISSGVNSSVVNIGDDAALVL 475
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+ ES + + +EV + K +E + N +
Sbjct: 476 NVYESHESMLKPFDEVKAEAVNAVINDKANKEADACLNTFAKAVINDSNT----EIPAHV 531
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
+ +NR + + + + + + + K + +
Sbjct: 532 VHRSAVTLNRSSADVEPAFGMALFAIPQEGQNRYIIASNKGNPTLAILKEVGNAATTNEN 591
Query: 587 KDK---FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ S L Q + +L +++ + +T +++ I+
Sbjct: 592 AELNQILRSQLVQANSLELRNALYKGARELTEITYNEDAIK 632
>gi|226953081|ref|ZP_03823545.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
[Acinetobacter sp. ATCC 27244]
gi|226836173|gb|EEH68556.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
[Acinetobacter sp. ATCC 27244]
Length = 623
Score = 193 bits (489), Expect = 7e-47, Method: Composition-based stats.
Identities = 108/636 (16%), Positives = 226/636 (35%), Gaps = 33/636 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ LV+ P + G+ + + SV Q + ++ K
Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFSGGNKADVAKSVNGQDISNKELESAIK 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + ++ +D LV+ + L Q E +G+ ++ +A+
Sbjct: 61 NYKDQYLALVQG--DESLLNLSAIQERAMDALVARSLLSQQAEKLGISLSDAQLEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F ++ +FS ++ + L G+ + I + + + + S L Q
Sbjct: 119 QPSFQ-QNGQFSQQLYENYLRSVGLTNQALISSLRQDHALKMISSSLIDNALVSKSDLQQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + S +T ++ K+K+ ++ + Y++
Sbjct: 178 LANLQTEQRTLHLASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASVDVDYVVLSPAL 237
Query: 242 KEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------SLKK 292
E+ +++ +LQ Y EK R V+ ++ + D A Q ++
Sbjct: 238 LEQANLAVTDADLQQAYAAFVEKQQQSVKREVKHILVTTDERDDAAAQKLINDVYAKIQS 297
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF--SLAKKGDFTPVIHGSFGYVI 350
G F Q A + + S + G Y P AD + K G + + +GY I
Sbjct: 298 GMTFAQAASQYSEDPSSKNQGGLVSAYAPGAFSADFDNAVNTLKNGQVSKPVKTQYGYHI 357
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
V + SF+ K + ++ TKA+ + L E + S++ +++ K
Sbjct: 358 IEVQ-VPTVNIPSFESEKARLTAEVEKTKAANLFSDTVNNLNEMVVGSDSLEVVAQEVKA 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
++ A + + + LF K+ + + L +G +W+++++
Sbjct: 417 ARVESA---KAITLATQHPILSDLNVKVKLFSDDVKNGDRNASSNIQLANGDSIWIKVRD 473
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
PA + L EV T+VK K + +K ++ ++ + + +
Sbjct: 474 YHPAGIKPLSEVTTEVKAKVVEQKAYKAAQAKMASILADFKT--QPAAQVVAKSQVNFEN 531
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG---- 582
R + FS P + V+ V+N
Sbjct: 532 AGTFAR----SHGLKRAIERAAFSIPAPSKEGMWSATTAKLPNELVIVAVSNVDSSVASS 587
Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P +E + Q + +L+ AYLKSQ +
Sbjct: 588 LPEKELLELKQLYQQFRGQQVLEDYTAYLKSQADIK 623
>gi|262370474|ref|ZP_06063800.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
gi|262314816|gb|EEY95857.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
Length = 621
Score = 193 bits (488), Expect = 1e-46, Method: Composition-based stats.
Identities = 97/638 (15%), Positives = 214/638 (33%), Gaps = 39/638 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E RK + W+ K L++ P + G+ FS V SV Q +
Sbjct: 1 MESFRKVIKGWLGKALLILFLTPLALVGIEGY-FSSGSKDAVKSVNGQDISEKELETLTA 59
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + K +D L++ L Q E +G+ ++ IA+
Sbjct: 60 SFKEQFLAYANG--DETLLNQSFIKDKAMDQLIANTLLLQQAEKLGISLSDTQIEQMIAQ 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F ++ KFS + S L G++ + + + + + FV S L + Q
Sbjct: 118 QPSFQ-ENGKFSETRYSSYLQSVGMSSDALVANLRQDHALKMMRSTFVDYALVSKLDIQQ 176
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI-LFDVH 240
E R+V + +N S + +++++ ++ + Y+ L +
Sbjct: 177 IANLQTEQRTVQFANVNLDEYKKNVKVSAQEIENYYKQHPAMFKQVASVDVDYVLLAPAN 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG------- 293
+++ ELQ Y + E V+ ++ D + +
Sbjct: 237 VPAAASPVTDAELQQAYTQFVEAQKDNVAPLVKHILITTDARTDAEAKKRAEEVVAKIKA 296
Query: 294 -----KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
Q +E+ + +L ++K D D + K G + + FGY
Sbjct: 297 GTSFAAAAAQYSEDTASKANGGALAVYNKGTFGDA--FDQAVASLKSGQVSAPVKTEFGY 354
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ ++ SF+ K + +++ K + + L E + ++D +S+
Sbjct: 355 HVI-ETDAPAVKLPSFENEKARLTAEVQKNKTANAFSDTVNSLNELVVDSDALDVVSQEV 413
Query: 409 -KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + + + + V + + LF K+ + ++ LP+G +W +
Sbjct: 414 KGVQVQTVKGMTLSTQHP----VLSNAAVKVKLFNDDVKNGDRNATSSIQLPNGDVVWAK 469
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+++ A + L+E VK K + +K Q + ++ + + G +
Sbjct: 470 VRDYHAAGVQTLQEATPRVKAKLVEQKAYDAAKAKIAQSLKDFKT--QPAASVVAKSGLT 527
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG---LSYVVFKVTNSK---- 580
R ++ FS + + VV V+N
Sbjct: 528 FTAPQVFIR----SQGLPRAVERAAFSQAAPKAGQWSVTTALLPTEMVVVAVSNVNKTTS 583
Query: 581 -VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + Q+ + + + YLK+ +
Sbjct: 584 SALTDEQLAELSKLYQQLRGQQEAEDYVQYLKAHAKIK 621
>gi|169796089|ref|YP_001713882.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
[Acinetobacter baumannii AYE]
gi|213157178|ref|YP_002319223.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
AB0057]
gi|215483544|ref|YP_002325763.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
AB307-0294]
gi|301347497|ref|ZP_07228238.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB056]
gi|301511279|ref|ZP_07236516.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB058]
gi|169149016|emb|CAM86893.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
[Acinetobacter baumannii AYE]
gi|213056338|gb|ACJ41240.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
AB0057]
gi|213987782|gb|ACJ58081.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
AB307-0294]
Length = 621
Score = 193 bits (488), Expect = 1e-46, Method: Composition-based stats.
Identities = 104/634 (16%), Positives = 219/634 (34%), Gaps = 31/634 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ LV+ P + G+ + + +V Q + +
Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + + K LD LVS L Q E +G+ ++ +A+
Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P ++ +FS ++ + L G+ + I + + + F S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + A SN T ++ K+++ ++ P + Y++
Sbjct: 178 IANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------SLKKG 293
K ++ EL+ Y K E R V+ ++ D A Q ++ G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F Q A + + + + G + Y P D K G + + +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQISQPVKTQYGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + SF+ K + ++ K + + L E + S+D + +++
Sbjct: 358 EA-ETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLD--AVVQQVK 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ + ++ P + LF K+ + + L +G +WV++++
Sbjct: 415 GTKIESLNGVTLATQNPYLSD-PNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDY 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
A + L + + +VK K + +K ++ E+ + + + +
Sbjct: 474 HAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKT--QPAEQVVAKNKVAFESA 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM-----VKCFPIENGLSYVVFKVTNSKVG---P 583
R ++ FS P V + N L V NS P
Sbjct: 532 GVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAMP 587
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q + +L+ YLKS +
Sbjct: 588 ADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621
>gi|169633493|ref|YP_001707229.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
[Acinetobacter baumannii SDF]
gi|169152285|emb|CAP01195.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
[Acinetobacter baumannii]
Length = 621
Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats.
Identities = 103/634 (16%), Positives = 218/634 (34%), Gaps = 31/634 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ LV+ P + G+ + + +V Q + +
Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + + K LD LVS L Q E +G+ ++ +A+
Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P ++ +FS ++ + L G+ + I + + + F S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + SN T ++ K+++ ++ P + Y++
Sbjct: 178 IANLQTEQRTLHLASIKLDPYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------SLKKG 293
K ++ EL+ Y K E R V+ ++ D A Q ++ G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F Q A + + + + G + Y P D K G + + +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQISQPVKTQYGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + SF+ K + ++ K + + L E + S+D + +++
Sbjct: 358 EA-ETQANQIPSFEAEKSRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLD--AVVQQVK 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ + ++ P + LF K+ + + L +G +WV++++
Sbjct: 415 GTKIESLNGVTLATQNPYLSD-PNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDY 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
A + L + + +VK K + +K ++ E+ + + + +
Sbjct: 474 HAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKT--QPAEQVVAKNKVAFESA 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM-----VKCFPIENGLSYVVFKVTNSKVG---P 583
R ++ FS P V + N L V NS P
Sbjct: 532 GVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAMP 587
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q + +L+ YLKS +
Sbjct: 588 ADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621
>gi|260555138|ref|ZP_05827359.1| ppic-type ppiase domain-containing protein [Acinetobacter baumannii
ATCC 19606]
gi|260411680|gb|EEX04977.1| ppic-type ppiase domain-containing protein [Acinetobacter baumannii
ATCC 19606]
Length = 621
Score = 192 bits (486), Expect = 2e-46, Method: Composition-based stats.
Identities = 104/634 (16%), Positives = 219/634 (34%), Gaps = 31/634 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ LV+ P + G+ + + +V Q + +
Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + + K LD LVS L Q E +G+ ++ +A+
Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P ++ +FS ++ + L G+ + I + + + F S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + A SN T ++ K+++ ++ P + Y++
Sbjct: 178 IANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------SLKKG 293
K ++ EL+ Y K E R V+ ++ D A Q ++ G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F Q A + + + + G + Y P D K G + + +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQISQPVKTQYGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + SF+ K + ++ K + + L E + S+D + +++
Sbjct: 358 EA-ETQANQIPSFEAEKSRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLD--AVVQQVK 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ + ++ P + LF K+ + + L +G +WV++++
Sbjct: 415 GTKIESLNGVTLATQNPYLSD-PNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDY 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
A + L + + +VK K + +K ++ E+ + + + +
Sbjct: 474 HAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKT--QPAEQVVAKNKVAFESA 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM-----VKCFPIENGLSYVVFKVTNSKVG---P 583
R ++ FS P V + N L V NS P
Sbjct: 532 GVFTR----SQGLKRAIERAAFSVPEPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAMP 587
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q + +L+ YLKS +
Sbjct: 588 ADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621
>gi|239501895|ref|ZP_04661205.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB900]
Length = 621
Score = 192 bits (486), Expect = 2e-46, Method: Composition-based stats.
Identities = 104/634 (16%), Positives = 219/634 (34%), Gaps = 31/634 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ LV+ P + G+ + + +V Q + +
Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + + K LD LVS L Q E +G+ ++ +A+
Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P ++ +FS ++ + L G+ + I + + + F S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + A SN T ++ K+++ ++ P + Y++
Sbjct: 178 IANLQTEQRTLHLASIKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------SLKKG 293
K ++ EL+ Y K E R V+ ++ D A Q ++ G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F Q A + + + + G + Y P D K G + + +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQISQPVKTQYGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + SF+ K + ++ K + + L E + S+D + +++
Sbjct: 358 EA-ETQANQIPSFEAEKPLLIAEVEKNKVASVYSDTVNSLNETIVGNDSLD--AVVQQVK 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ + ++ P + LF K+ + + L +G +WV++++
Sbjct: 415 GTKIESLNGVTLATQNPYLSD-PNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDY 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
A + L + + +VK K + +K ++ E+ + + + +
Sbjct: 474 HAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKT--QPAEQVVAKNKVAFESA 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM-----VKCFPIENGLSYVVFKVTNSKVG---P 583
R ++ FS P V + N L V NS P
Sbjct: 532 GVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAMP 587
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q + +L+ YLKS +
Sbjct: 588 ADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621
>gi|118602656|ref|YP_903871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567595|gb|ABL02400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 615
Score = 192 bits (486), Expect = 2e-46, Method: Composition-based stats.
Identities = 109/627 (17%), Positives = 243/627 (38%), Gaps = 26/627 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML IR ++ WVA + + ++ +PF+++G+S+ F+ + + SV + + F+ +
Sbjct: 1 MLGSIRNKTKGWVAYLIVGLITIPFVLFGISEY-FTGVSNIVIASVDGVDISKAEFLAKF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q++ ++E L + IL+ ++ L+Q ++ E + I
Sbjct: 60 NPQKRRLQQELDKKYDTE--FDAMLKQSILNQMIDKYLLEQLSNELSYETTANELNTIIQ 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ LF K +FS + + L G +Y + L+ T + + L
Sbjct: 118 ANNLFKKKG-RFSLEKYKQLLRLNGYTTIKYEAIKLQELTETQIKYNLLDSAFVIPTELA 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ ++ + R YI ++ + ++ K + APE +I ++ ++
Sbjct: 177 KLQKLNDQQRQFSYIAIHADDYVKEVKVDVQSVKNFYNNKKALFFAPEQVKIEFVELSLN 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ K I++S+DEL Y+ +E++ E R + ++ ++ A + L G KF +LA
Sbjct: 237 KISKNIKVSDDELFNFYKDEQERFTREEERQAQHILLEDKSTAQKVIALLNNGGKFAKLA 296
Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
E+ + + LG F++ + + K + + ++ FGY I ++NI
Sbjct: 297 EQYSQDTASKANAGDLGFFTRGVMLPE--FEKKVFAMKLNEVSDLVKSEFGYHIIKLNNI 354
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
K F VK ++ + T+A + ++L +++EI + +
Sbjct: 355 KVKTLKPFDAVKSELLDLYTQTQAQKVFYSLTEQLTHLAYEV-NLEEIVDQMNLKLQVSD 413
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D + K V L + + L M ++++E + R
Sbjct: 414 FFDRKNTQLNQKIVVTAFSDTVL--------NKGENSEILELSKNKLMVIRVREKLAQRQ 465
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ EV ++ T+ V + A +V K + K + + L N ++
Sbjct: 466 KSFIEVKDEINAHLMTLLAKIFVDNLAKNVVDLLVHNDK--DTLKKLMNKNKLKWNHVDW 523
Query: 537 MDNENKFFGYDGISQVFSGPV----EMVKCFPIENGLSYVVFKVTNSK-VGPVQEKDKFI 591
+ ++ I++VF+ + + V+ K+ K
Sbjct: 524 VKRDSSKVKMAIINKVFALAKSTNGNFSYSAQDLDESNVVIIKLLGVKTTDTKTVNTTLE 583
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTV 618
L + ++ +++ LKSQ + +
Sbjct: 584 RSLLIFESNEIFANILETLKSQAKIKI 610
>gi|254294057|ref|YP_003060080.1| hypothetical protein Hbal_1695 [Hirschia baltica ATCC 49814]
gi|254042588|gb|ACT59383.1| hypothetical protein Hbal_1695 [Hirschia baltica ATCC 49814]
Length = 634
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 96/632 (15%), Positives = 234/632 (37%), Gaps = 10/632 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML I+R+ R+ + + + +L V GL D +FS S ++S G + + N
Sbjct: 1 MLSIVRRMVRSKLMLVVIGLLIVGLAGMGLPD-MFSSSEPRGMISAGDRFIVKRDIDNRI 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
L + + G ++ + A G+ ++IL ++ S L F + + A V +
Sbjct: 60 DTYLRSVRESEGRTISRQEAAKAGVIQQILQSVASETALLAFADKEKISASRYAVTDMVV 119
Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+P F +F F +G++ ++ + + +R + G+ + L
Sbjct: 120 NAPRFKNAVTGEFDDASFKDFARLQGLSVRQLETNLKESFTREYIADAVSTGVNTPDALG 179
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
E R Y+ + N P++ + ++E+ K + P+ K +S +
Sbjct: 180 KVWITSQSEQREFSYVKIPNDVSDEGILPTDEEVAAFYEENKTAFTQPKRKALSILSISP 239
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ +EI L+ EY+ +++ SPE R +++ +++ +A + G +
Sbjct: 240 IDFIGSVEIPETVLKDEYDLRIKEFSSPESREIKEFSSSDRRLVQQAVDEIGAGGDVETV 299
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + +++ I D A + F + + F G + A+V I P
Sbjct: 300 LSSLPDLVVTTKI--VTRDQISDEEYAKTAFIVPEDTHFGVFELGEGNWTGAYVDTIYPG 357
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
F+ V I ++ A + + + + +F+ G +++E + + + +D
Sbjct: 358 TPKPFETVSDQIFTELATVAAEQIFERKQEEMFDFVGGGFNLEEAADALGVPLMKYSAID 417
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
G+ +G + I ++ + + D + + +++ +L
Sbjct: 418 AQGRTEEGHLLGGIVFRPDAMETIQSLDFEDEMSEILDDANNGIYVIRLDTVEEGFIPEL 477
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
+V + + +K + ++ AN L+ + +K + + LG + Q
Sbjct: 478 ADVKSLATESYKIYQASQASEKLANDLL-DRAKALDDLSEAASELGLDYVKPEQNLNRRE 536
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF----ISYLT 595
+ Q+ ++G V + N + + ++
Sbjct: 537 APEGVTRSMAYQLLGAKAGDYVVASEQDGSK-TVLHLENVSNLEPEMLETLASSGKRAVS 595
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ + D+ + + + + V++N + Y+
Sbjct: 596 ESLEADIQRAFVEAVMEDAKIEVNNNAVSEYI 627
>gi|303257878|ref|ZP_07343887.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
bacterium 1_1_47]
gi|302859221|gb|EFL82303.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
bacterium 1_1_47]
Length = 645
Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats.
Identities = 105/642 (16%), Positives = 228/642 (35%), Gaps = 39/642 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + R R W+ I ++++ F+ G++ ++ + V + + F
Sbjct: 5 MFQSFRNQKR-WLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFDYQK 63
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + Q+ G V+ + + IL N+ + L + + I
Sbjct: 64 REYIERMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAINVIK 123
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ F KD +FS +++ + LA G ++++++ + L + +V +
Sbjct: 124 NADAFK-KDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNSVAQTTFVPKKTVA 182
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
E R V + + S + ++++++KD+YRAPE I +++
Sbjct: 183 LLNDILRETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFVVMSPE 242
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--------- 291
+ E S EL+ YE+N++KY E R ++ + ++ +
Sbjct: 243 TVKMTAEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKAKADQDAKAKAEKI 302
Query: 292 ------KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
KF QLA+E S L F++ + D AKK +
Sbjct: 303 LAEVKADPSKFAQLAKENSADPGTAESGGDLDFFTQGQMVPE--FDKAVFGAKKDEIVGP 360
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ FGY I HV++I P+ F+EV+ +I + E+ + +
Sbjct: 361 VKTEFGYHIIHVTDINPAHVRPFEEVRSEILKFWQDQHRQSMFAENADGFTNMVYEQSDS 420
Query: 402 DEISRR-EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + L + +G + I + V +
Sbjct: 421 LDPAVEKYGLTLHTLDGLTQSGLPKTSPDAQYITKRVIEDLFSPDCLQEKRNTQAVEVAA 480
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + +I + PA + +EV ++K + + + + E K K+
Sbjct: 481 NTLVSARIVKHTPAHIKSFDEVKGEIKDQLELEQASALAKKAGEAKLAEL-KAKKDLEGF 539
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
G L ++R++ +++ I + P + + F +YV+ V +
Sbjct: 540 GHEL--------TVSRINPQSQSMP--LIQAEMAVPAKSLPAFTGTTVPDGAYVISYVES 589
Query: 579 SKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
SK+ + D+ ++ S LK Y + +
Sbjct: 590 SKMPAADDSQVDEIRGEALTSQSRADEASFYEGLKKLYKMEI 631
>gi|294650670|ref|ZP_06728024.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus
ATCC 19194]
gi|292823461|gb|EFF82310.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter haemolyticus
ATCC 19194]
Length = 623
Score = 191 bits (484), Expect = 3e-46, Method: Composition-based stats.
Identities = 107/636 (16%), Positives = 225/636 (35%), Gaps = 33/636 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ LV+ P + G+ + + SV Q + ++ K
Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFSGGNKADVAKSVNGQDISNKELESAIK 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + ++ +D LV+ + L Q E +G+ ++ +A+
Sbjct: 61 NYKDQYLALVQG--DESLLNLSAIQERAMDALVARSLLSQQAEKLGISLSDAQLEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F ++ +FS ++ + L G+ + I + + + + S L Q
Sbjct: 119 QPSFQ-QNGQFSQQLYENYLRSVGLTNQALISSLRQDHALKMISSSLMDNALVSKSDLQQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + S +T ++ K+K+ ++ + Y++
Sbjct: 178 LANLQTEQRTLHLASIKLDDYKKGVTASTQEITDYYNKHKNEFKQVASVDVDYVVLSPAL 237
Query: 242 KEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------SLKK 292
E+ +++ +LQ Y EK R V+ ++ + D A Q ++
Sbjct: 238 LEQANLAVTDADLQQAYAAFVEKQQQSVKREVKHILVTTDERDDAAAQKLINDVYAKIQS 297
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF--SLAKKGDFTPVIHGSFGYVI 350
G F Q A + + S + G Y P AD + K G + + +GY I
Sbjct: 298 GMTFAQAASQYSEDPSSKNQGGLVSAYAPGAFSADFDNAVNTLKNGQVSKPVKTQYGYHI 357
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
V + SF+ K + ++ TKA+ + L E + S++ +++ K
Sbjct: 358 IEVQ-VPTVNIPSFESEKARLTAEVEKTKAANLFSDTVNNLNEMVVGSDSLEVVAQEVKA 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
++ A + + + LF K+ + + L +G +W+++++
Sbjct: 417 ARVESA---KAITLATQHPILSDLNVKVKLFSDDVKNGDRNASSNIQLANGDSIWIKVRD 473
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
A + L EV T+VK K + +K ++ ++ + + +
Sbjct: 474 YHSAGIKPLSEVTTEVKAKVVEQKAYKAAQAKMASILADFKT--QPAAQVVAKSQVNFEN 531
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMV----KCFPIENGLSYVVFKVTNSKVG---- 582
R + FS P + V+ V+N
Sbjct: 532 AGTFAR----SHGLKRAIERAAFSIPAPSKEGMWSATTAKLPNELVIVAVSNVDSSVASS 587
Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P +E + Q + +L+ AYLKSQ +
Sbjct: 588 LPEKELLELKQLYQQFRGQQVLEDYTAYLKSQADIK 623
>gi|184157984|ref|YP_001846323.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ACICU]
gi|332874443|ref|ZP_08442346.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
gi|183209578|gb|ACC56976.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (Rotamase)
[Acinetobacter baumannii ACICU]
gi|323517928|gb|ADX92309.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
[Acinetobacter baumannii TCDC-AB0715]
gi|332737287|gb|EGJ68211.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
Length = 621
Score = 191 bits (483), Expect = 4e-46, Method: Composition-based stats.
Identities = 103/634 (16%), Positives = 220/634 (34%), Gaps = 31/634 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ LV+ P + G+ + + +V Q + +
Sbjct: 1 MESFRTVIKGWLGKVLLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + + K LD LVS L Q E +G+ + ++ +A+
Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSNAQIEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P ++ +FS ++ + L G+ + I + + + F S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + A S+ T ++ K+++ ++ P + Y++
Sbjct: 178 IANLQTEQRTLHLASIKLDPYKAGLTASDQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------SLKKG 293
K ++ EL+ Y K E R V+ ++ D A Q ++ G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGG 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F Q A + + + + G + Y P D K G + + +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQISQPVKTQYGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + SF+ K + ++ K + + L E + S+D + +++
Sbjct: 358 EA-ETQANQIPSFEAEKPRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLD--AVVQQVK 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ + ++ P + LF K+ + + L +G +WV++++
Sbjct: 415 GTKIESLNGVTLATQNPYLSD-PNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDY 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
A + L + + +VK K + +K ++ E+ + + + +
Sbjct: 474 HAAGVKPLAQAMNEVKAKVIDEKARKAAQAKIATMLTEFKT--QPAEQVVAKNKVAFESA 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM-----VKCFPIENGLSYVVFKVTNSKVG---P 583
R ++ FS P V + N L V NS P
Sbjct: 532 GVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTIANLPNELVVVAVSNVNSAAVNAMP 587
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q + +L+ YLKS +
Sbjct: 588 ADQLQQLKQLYRQSRGQQILEDYSEYLKSHAKIK 621
>gi|116619198|ref|YP_821354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Solibacter usitatus Ellin6076]
gi|116222360|gb|ABJ81069.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Solibacter usitatus Ellin6076]
Length = 644
Score = 191 bits (483), Expect = 4e-46, Method: Composition-based stats.
Identities = 106/655 (16%), Positives = 231/655 (35%), Gaps = 45/655 (6%)
Query: 1 MLEIIRKASRT--WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFI 57
M ++ R + + L V+ + L + + + S S V +G+ +
Sbjct: 1 MFDLFRSRDKMVRILLGALLGVVALSMLTYLVPNYNTGSSTSDVVVAEIGKDTITLPEMQ 60
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + G + +E +++D +V+ + E +G + V
Sbjct: 61 RVIQATIR------GRQLPTEIL--PTYIPQMVDQMVTERAMAMEAERLGYQVSDADVAD 112
Query: 118 EIARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I + D KF + + + LA++ + ++ + ++ + + + G +
Sbjct: 113 SIRQMVPSLFPDGKFVGKETYAAMLAQQNMTIDQFEADLKRQVAISRFRDIAMEGTIVTP 172
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
++ A + E V+++ L + PS L +++ Y PE + ++ +
Sbjct: 173 AEIEAAFKKKNEKIKVEWVKLTADKYKGESQPSAQELQDFYKANVSRYTVPEKRNLTVLT 232
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------- 286
D + + I++ +LQ Y++NKE + +PE ++ Q +
Sbjct: 233 ADEAKMSASLNITDADLQRVYDQNKEAFRTPERVKARHILLKTQGKPASEEAAIKAKGES 292
Query: 287 -FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ +K G F +LA+E + + LG + + K G+ + +
Sbjct: 293 LLKQIKAGGDFAKLAKENSEDPGSAVNGGDLGDWITHGQMVAEFDKA-IFALKPGEVSDL 351
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTS 400
+ +GY I + + +F EVK D+A Q + + SE +++ R +
Sbjct: 352 VKTQYGYHIVQTLAKQDAGMRTFAEVKGDLATQYKKQRVSELMQQASDRAQAALQKDPQH 411
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
++++ + +P G + A L + + V
Sbjct: 412 PEKVAAELNMQLAKVPNFAPGGAIGELPANADFDQSVANLKKGEVSQPVTVNNKVVVAVV 471
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ P EEV ++ + A V AN+LV + G +
Sbjct: 472 DDVI--------PGHPSTFEEVQGQIRDTIVANRAAAAVQRHANELVEKAKAMGGDLEKA 523
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
K++G + T+ ++R N I++ FS P V VV KV +
Sbjct: 524 AKSMGLDVKTSGDVDRSGNIEGLGTASYIAEGFSRPDGTVYGPIGTPDGGTVVMKVISHT 583
Query: 581 VGPVQE--------KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ + +D+ S + N + V L Q + +H ++I R +
Sbjct: 584 GADMAQLPAQRNAIRDEIKSQRARDRNTLFENGVKDMLIKQGKIKIHQDVINRLI 638
>gi|331000463|ref|ZP_08324138.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
YIT 11859]
gi|329571795|gb|EGG53475.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
YIT 11859]
Length = 641
Score = 191 bits (483), Expect = 4e-46, Method: Composition-based stats.
Identities = 105/642 (16%), Positives = 228/642 (35%), Gaps = 39/642 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + R R W+ I ++++ F+ G++ ++ + V + + F
Sbjct: 1 MFQSFRNQKR-WLMLIAMILIIPAFVFIGINGYSRLNPDANAIAKVDGKGIQPEEFDYQK 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + Q+ G V+ + + IL N+ + L + + I
Sbjct: 60 REYIERMRQQEGGAVDPSIFETQEANAAILQNIATRRALQAQMAHHYMNVSEADAINVIK 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ F KD +FS +++ + LA G ++++++ + L + +V +
Sbjct: 120 NADAFK-KDGQFSPELYENYLAARGKSDQQFVYELRRDLVQDMLVNSVAQTTFVPKKTVA 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
E R V + + S + ++++++KD+YRAPE I +++
Sbjct: 179 LLNDILRETRVVRTMSFDPSSYMKDVKVSEEQIKKYYDEHKDDYRAPESLNIQFVVMSPE 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK--------- 291
+ E S EL+ YE+N++KY E R ++ + ++ +
Sbjct: 239 TVKMTAEPSEQELKDFYEQNRKKYEVEESRRAAHILIAPDANEADKAKADQDAKAKAEKI 298
Query: 292 ------KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
KF QLA+E S L F++ + D AKK +
Sbjct: 299 LAEVKADPSKFAQLAKENSADPGTAESGGDLDFFTQGQMVPE--FDKAVFGAKKDEIVGP 356
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ FGY I HV++I P+ F+EV+ +I + E+ + +
Sbjct: 357 VKTEFGYHIIHVTDINPAHVRPFEEVRSEILKFWQDQHRQSMFAENADGFTNMVYEQSDS 416
Query: 402 DEISRR-EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + L + +G + I + V +
Sbjct: 417 LDPAVEKYGLTLHTLDGLTQSGLPKTSPDAQYITKRVIEDLFSPDCLQEKRNTQAVEVAA 476
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + +I + PA + +EV ++K + + + + E K K+
Sbjct: 477 NTLVSARIVKHTPAHIKSFDEVKGEIKDQLELEQASALAKKAGEAKLAEL-KAKKDLEGF 535
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTN 578
G L ++R++ +++ I + P + + F +YV+ V +
Sbjct: 536 GHEL--------TVSRINPQSQSMP--LIQAEMAVPAKSLPAFTGTTVPDGAYVISYVES 585
Query: 579 SKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
SK+ + D+ ++ S LK Y + +
Sbjct: 586 SKMPAADDSQVDEIRGEALTSQSRVDEASFYEGLKKLYKMEI 627
>gi|262376134|ref|ZP_06069364.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
gi|262308735|gb|EEY89868.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
Length = 621
Score = 191 bits (483), Expect = 4e-46, Method: Composition-based stats.
Identities = 107/636 (16%), Positives = 217/636 (34%), Gaps = 35/636 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E RK + W+ K+ LV+ P + G+ FS S SV ++ + K
Sbjct: 1 MEAFRKVIKGWLGKVLLVLFLTPLALVGIEGY-FSSGNSDAAKSVNGTEISQKELESLTK 59
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ +D+K +D LV+ L Q E++G+ ++ IA+
Sbjct: 60 SFKEQYLSYANG--DETLLNQSFIDQKAMDTLVARTLLLQQAEELGISLSDQQIEQMIAQ 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F +D KFS+ ++ + L G+ + I+ K + + F+ S + + Q
Sbjct: 118 QPTFQ-QDGKFSNALYENYLKSIGMTNRALIESLRKDHALKMLSSTFLDYPLVSPVEMQQ 176
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R + +N ++A + ++EK+K ++ P + Y++ +
Sbjct: 177 IADLQTEQRHIHISSINLDSYKKDVKVTDADIAAYYEKHKTLFKQPTSVDVDYVVLKPSD 236
Query: 242 KEKKI-EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD--------EAFQSLKK 292
+ + +++ ELQ Y V+ ++ +D E +K
Sbjct: 237 IQVQSLAVTDAELQEAYTAFVATQKQAVKPDVKHILITADSRSDAEAKKLATEIAAKIKA 296
Query: 293 GKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
G F Q A + + S G + +E + + D S K G + + +GY
Sbjct: 297 GTTFAQAAAQYSEDPESKSKGGALAVYEEGVFGTAF-DQTVSSLKSGQVSAPVKTDYGYH 355
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
I V + + + + K++ + + + +
Sbjct: 356 IISVQTPDVAVPSFESQKARLSEEALAAKKSNAFSDTVNTLNDMVVGSDSLDVVTQEVKG 415
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ V + +D V + + LF K+ + ++ L +G W++++
Sbjct: 416 VQVQKAQGVTLSTRDP----VLSDANLKVKLFNNDVKNGDRNASTSIQLANGDVAWIKVR 471
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
A ++ L E VK K A +K + + E+ +
Sbjct: 472 NYHAAGEQTLAEAKPRVKAQLIEDKAAALAKAKIQKALDEFKTK---PAAAVAKGDLIFE 528
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG---LSYVVFKVTNSKVGP--- 583
R + D FS P + + VV V+ K P
Sbjct: 529 DAGVYTRAE---GLLKRDVQRAAFSLPTPKAGHWSVTTAKMPNELVVVAVSEVKKNPVDV 585
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+++ + + Q+ + D YLKSQ +
Sbjct: 586 LSAEQRSELVKLYQQLRGQQEFDDYTRYLKSQAKIK 621
>gi|262372262|ref|ZP_06065541.1| ppic-type ppiase domain-containing protein [Acinetobacter junii
SH205]
gi|262312287|gb|EEY93372.1| ppic-type ppiase domain-containing protein [Acinetobacter junii
SH205]
Length = 623
Score = 191 bits (483), Expect = 4e-46, Method: Composition-based stats.
Identities = 101/637 (15%), Positives = 218/637 (34%), Gaps = 35/637 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ LV+ P + G+ + + SV Q + + K
Sbjct: 1 MESFRTLIKGWLGKVLLVLFLTPLALVGIEGYFSGGNKADVAKSVNGQDISNKELETATK 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + +K LD L++ + L Q E +G+ ++ +A+
Sbjct: 61 NYKDQYLSLVKG--DESLLNLSLIQEKALDALIARSLLQQQAEKLGISLSDTQLEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F ++ +FS ++ + L G+ + I + + + + S L Q
Sbjct: 119 QPSFQ-ENGQFSQKLYENYLRSVGMTNQGLIASLRQDHALKMISSTLMDYALVSKSDLQQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH- 240
E R++ + SN + ++ K+K+ ++ + Y++
Sbjct: 178 LANLQTEQRTLHLASIKLDDYKKGITVSNQEIADYYNKHKNQFKQVANVDVDYVVLTPAL 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------SLKK 292
+ + S ELQ Y+ +K R V+ ++ Q ++
Sbjct: 238 LPQANVAPSEAELQQAYKAFVDKQQKDVKREVKHILITTDSRDAATAQKLANDVYAKIQS 297
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF--SLAKKGDFTPVIHGSFGYVI 350
G F A + + S + G + Y P V D + K G + + +GY I
Sbjct: 298 GMSFADAAAQFSEDPSSKTQGGLVEAYAPGVFSTDFDNAVNSLKNGQISKPVKTQYGYHI 357
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE-K 409
+N S++ K + +++ TK + + L E + S+D +++
Sbjct: 358 I-AANAPAIDIPSYEAEKPRLIAEVQKTKQANLFSDTVNSLNEMVVGNDSLDAVAQEVKG 416
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ V ++ + + LF K+ + ++ L +G +W++++
Sbjct: 417 VRVESAKGVTLTTQNP----YLSDLNVKAKLFNDDVKNGDRNASSSIQLANGDVIWIKVR 472
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ A + L + T+VK K + +K + E+ + +
Sbjct: 473 DYRAAGVKTLAQATTEVKAKVIEEKAYKAAQAKIASTLAEFKT--QPAAQVVAKSKIIFE 530
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEM------VKCFPIENGLSYVVFKVTNSKVGP 583
R ++ FS P V + N L V N+
Sbjct: 531 DAGTYAR----SQGLKRAIERAAFSIPAPTKEGMWSVTTTQLPNELVIVAVSTVNTNAAS 586
Query: 584 V---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ ++ Q + +L+ YLKSQ +
Sbjct: 587 ALQPEQLNELTKLYQQFRGQQILEDYTEYLKSQAKIK 623
>gi|301060821|ref|ZP_07201635.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
gi|300445070|gb|EFK09021.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
Length = 635
Score = 191 bits (483), Expect = 4e-46, Method: Composition-based stats.
Identities = 104/639 (16%), Positives = 240/639 (37%), Gaps = 36/639 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L ++RK +++W+ K + ++ + F+ + F+ + V V + + + +++
Sbjct: 3 LSLMRKHAKSWLIKALIAIIAIVFVFY--FGYSFTSDKAMKVAYVNGELINGPEYEKAYR 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
L + + N + L ++ LD+L++ + Q ++GL + I
Sbjct: 61 DMLMSFQARYKDMWNDNLLKIFNLKQRALDSLITQRLMSQAATELGLAVTEEEIQKAIMT 120
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F + +F + + L+ + +++ T L + + ++ + +
Sbjct: 121 YPAFQ-INGQFDMRRYQALLSANHMKPEDFEASITSELLDQKLKQFLFAFLNITDQEILE 179
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSN-AVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
F E + ++ + A L ++FEK K++YR PE + Y+ D
Sbjct: 180 YYTFANEKVKIGFVEFKPEDFKKSVTIEDKAKLKEYFEKNKESYRVPEKIAVRYLEIDPK 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQ 288
+ E ++E++ E+Q+ YE N ++Y P+ ++F K+ E +
Sbjct: 240 DFEGEVEVTEKEIQSYYEYNSDRYSQPKQVKARHILFKFNKDDSEEVKNTVKKKAEKVLE 299
Query: 289 SLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
+KG+ F LA++ LG F + + KKG+ + ++
Sbjct: 300 KARKGEDFASLAKKYSEGPTKSKGGDLGYFKTGEMEKP--FEEAAFALKKGEISDLVQTR 357
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FGY I V +IK + + VK +I + +E E L + + ++
Sbjct: 358 FGYHIILVEDIKEAGIKPLENVKGEIRATLTGNLTAELAHEKGLTLLDQMPYEVDLNAYG 417
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
++ + + + + + D V L G +
Sbjct: 418 KQNGLSAKTSEPFSKNAPIPGIE-------GSERVTATLFGLDKDEASSLVELG-GKFYI 469
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
Q ES + +L+ V V++++ + + S A + + E K+GK++ + K
Sbjct: 470 FQFAESKASYLPELKTVKKAVEENFISQEARVSAESAATKYLNEL-KDGKSWETMAKEHN 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQ-VFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ TN R + +++ F P N + + + ++
Sbjct: 529 RKIQQTNFFTRREAIPDIGNAPALNEMAFKLGKDNRYTQKPFVNDKAVFIIRWEGNEGID 588
Query: 584 V----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+EK + + L Q ++ + ++ I L+ + + +
Sbjct: 589 ETKFKEEKGTYRNSLAQTKHQRIFENWIQNLRKKAVIEI 627
>gi|260550156|ref|ZP_05824370.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
gi|260406911|gb|EEX00390.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
Length = 621
Score = 191 bits (483), Expect = 4e-46, Method: Composition-based stats.
Identities = 99/634 (15%), Positives = 218/634 (34%), Gaps = 31/634 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ L++ P + G++ + + +V Q + +
Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGINGYFNRGNKADVAKTVNGQDISKKDLETLTQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + + K LD LVS L Q E +G+ ++ +A+
Sbjct: 61 RYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P ++ +FS ++ + L G+ + I + + + F S + + Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQALIASLRQDHALKMLTSTFSDYALVSKVDVMQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + SN T ++ K+++ ++ P + Y++
Sbjct: 178 IANLQTEQRTLHLASIKLDTYKTGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSL 237
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA--------DEAFQSLKKG 293
K ++ EL+ Y K E R V+ ++ +E + ++ G
Sbjct: 238 MAKPAPATDAELKQAYAKFVETQQKNAKRVVKHILITTDARDDAAAQKLANEVYAKIQGG 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F Q A + + + + G + Y P D S K G + + +GY I
Sbjct: 298 LSFAQAAAQFSEDPTSKTKGGLVEAYAPGVFSDAFDKTVSSLKNGQVSQPVKTQYGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ SF+ K + ++ K + + L E + S+D + +++
Sbjct: 358 EA-ETPANQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGNDSLD--AVVQQVK 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ + +++ P + LF K+ + + L +G +WV++++
Sbjct: 415 GTKIESLNGVTLATQNPQLSD-PNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDY 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
A + L + + + K K + +K ++ E+ + + +
Sbjct: 474 HAAGVKPLAQAMNEAKAKVIDEKARKAAQAKIATMLTEFKT--QPAEQVVAKNKVPFESA 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEM-----VKCFPIENGLSYVVFKVTNSKVG---P 583
R ++ FS P V + N L V NS P
Sbjct: 532 GVFTR----SQGLKRAIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAMP 587
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q + +L+ YLKS +
Sbjct: 588 ADQLKQLQQLYRQSRGQQILEDYSEYLKSHAKIK 621
>gi|254468807|ref|ZP_05082213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [beta proteobacterium
KB13]
gi|207087617|gb|EDZ64900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [beta proteobacterium
KB13]
Length = 627
Score = 190 bits (482), Expect = 4e-46, Method: Composition-based stats.
Identities = 97/646 (15%), Positives = 233/646 (36%), Gaps = 44/646 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR AK+ L ++ VPF ++G+ L S+ + TV SV ++ F S
Sbjct: 1 MLETIRNGLEKKWAKVVLAIIVVPFALFGIDSYLNSMGSNVTVASVNNFEITAQDFQRSM 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +S K ++D+LV + ++ ++ I
Sbjct: 61 MVLQERLDA---EGQDRSILQSPEFRKSVIDSLVDSQLIKSAVDKYNFRISDDQLSTYIV 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F ++ KFS D + + G+ K+ ++ + G ++
Sbjct: 118 GMPDFQ-ENGKFSQDRYDQIVQYNGLTPKKLEQQIRGDMATQQIQGTLANLTYFPKKNIE 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + ++ R V + ++ + +++E D++ P+ +I ++++ V
Sbjct: 177 EIAKIAYQKRHVKLYDMLLLDYEDKIKVTDDEIKEFYEANTDSFIRPDQVKIEFVVYSVA 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE--------------- 285
+ ++++E++ YE NK+ Y E R+ ++F +
Sbjct: 237 NIVPNVSVTDEEVKEFYEFNKQNYEGDEERSASHILFMADASQSDEEVEKVRQKASNVLK 296
Query: 286 --AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
K + L+++ + + SLG F + + + KG+ + ++
Sbjct: 297 DIKKDPNKFEEYAKDLSQDPESAKNGGSLGFFKRGVMVKE--FEESAFTLNKGEISDLVR 354
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM-D 402
FG+ I + ++ VSF++VK + ++ KA E + + + D
Sbjct: 355 TDFGFHIIRLDDV-KGDQVSFKDVKAQVKGELLYGKALEIYNTNAEDFSNIVYEQKESLD 413
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ ++ + P + A + P + +F D + + + +
Sbjct: 414 PVVKKYNLDVQQSPWMSKA----DAENFFNNPVFSEAVFDQTIIDSKFNTP-AIEVSPNN 468
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ ++ + + + L++V +VK K + E + + N+LV
Sbjct: 469 LVSARVVDFRKSEAQALDDVKDEVKSFLKKRNSQENLINDGNKLVEGLQDG--------S 520
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSK 580
+ I+R D + ++F + + + ++V K+
Sbjct: 521 AKEPKWIDELTIDRSD--KQGLSDVIAEEIFKMNSSTLPIYSGIYDPKGEFMVIKLDKVD 578
Query: 581 VGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
++ + F + K++ S + L++ V ++ +Q
Sbjct: 579 SESILEEDVEFFNEEFMAAIEKEIEKSYVEDLRADSKVKINSKFLQ 624
>gi|226227335|ref|YP_002761441.1| peptidyl-prolyl cis-trans isomerase [Gemmatimonas aurantiaca T-27]
gi|226090526|dbj|BAH38971.1| peptidyl-prolyl cis-trans isomerase [Gemmatimonas aurantiaca T-27]
Length = 610
Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats.
Identities = 89/646 (13%), Positives = 202/646 (31%), Gaps = 62/646 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFSSFIN 58
ML+ +R A++ I + + FL++ S + ++++ +V +++ +++ N
Sbjct: 1 MLQSMRSAAKYIWIFIIVAFVG-SFLLYETSGLAGRAPVTTTTSIATVNGEEILLTTWQN 59
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ Q+ G V + L+ + D +V+ L Q + G+ V
Sbjct: 60 AVNSLEQQQQQQSGRGVTLDE--RQQLEDRAFDEIVTEILLQQEYKRRGITVTDEEVVQA 117
Query: 119 IARSPLFHGK-------DNKFSHDVFVSRL----AREGINEKEYIDHYTKMLSRTDVVGM 167
SP D KF ++ L AR+ Y + + +
Sbjct: 118 ARVSPPPQATSSPDLQTDGKFDMQKYLRLLSSPMARQSGMLAGLEAFYRNEIPKQKLFDQ 177
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRA 226
G S+ L Q R ++ +V ++VL ++A ++Q++++ K Y
Sbjct: 178 VASGAYVSDERLWQVYRDRHDSAAVSFVVLRTDALTDTSVTVTDAEISQFYDRNKKRYER 237
Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
P +S + ++ + + +V + E
Sbjct: 238 PGRAIVSLLTVPRTVTAADSAAAHTRIDQIRAE---------------IVGGAKFEDVAK 282
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+S + +LG + + K G+ + + F
Sbjct: 283 RES-----------TDSLSGAQGGALGKGGRNRF--TPKFEEAAYALKVGELSQPVLTPF 329
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ I V + K D+ + + ++ R + LA + E ++
Sbjct: 330 GWHIIRVDDRKGDTL--------DLRHILVTVGQTDSSATRTDRRADSLANLGASQEDAK 381
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + L L V+ + ++ + + + +Y
Sbjct: 382 KFDDAAKALGLTAAQMVVVEKEPLSFAGRYVPSVSAWSFSGVRPGESSDLFDSPEAYYIA 441
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + L EV D+++ K E++ LV G
Sbjct: 442 RLDSLTKGGPQSLAEVKDDIRRRLARDKRIEKLRPDGEALVAAARSG--TLEAAAAAKGL 499
Query: 527 SLLTTNQINRMDNENKFFGY-DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-- 583
++ + +R+D + I F PV V P VV ++ +
Sbjct: 500 TVEKSAGFSRVDAVPGLGQFTQAIGGAFMVPVGQVGG-PFRAQDGMVVLRIDSRNDAKRD 558
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD-NLIQRY 626
EK L Q + + +D ++ L+ + ++ +
Sbjct: 559 AFEAEKASQRGQLLQSLRQQRIDEYLSNLRENTKIDDRRTEVLSQL 604
>gi|87200036|ref|YP_497293.1| hypothetical protein Saro_2020 [Novosphingobium aromaticivorans DSM
12444]
gi|87135717|gb|ABD26459.1| hypothetical protein Saro_2020 [Novosphingobium aromaticivorans DSM
12444]
Length = 646
Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats.
Identities = 97/648 (14%), Positives = 219/648 (33%), Gaps = 22/648 (3%)
Query: 1 MLEIIRKASRTWV----AKIFLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSS 55
ML R ++ + A +FL ++ + F + V+G VG ++
Sbjct: 1 MLGFFRSFLKSRIGVAIALLFLGLIALAFASADVTGSGFGGVAGGDRAAKVGSGRIGTGE 60
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ ++ + ++ G + +L ++ L ++ + GL V
Sbjct: 61 LGKALTSAFEQ-DRQKQPGLTMKQFLDGGGLEGVLSGMIDRLALAEWGKKHGLAVSDRLV 119
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI + F G D KFS + LA+ G+ +KE + + L ++ G +
Sbjct: 120 DSEIVKIGAFQGPDGKFSQKAYEQLLAQRGLTDKEVRNDLAQGLMARQLLLPAAFGAQMP 179
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + E R I + + P + L ++ K Y PE + I Y
Sbjct: 180 AEAVLRYASLLTEKRVGTIISVPSLAFAPAGGPDDNALAAFYNANKGRYMQPERRTIRYA 239
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
L D + ++ E+ Y+ N Y E R+V Q++ P + A + KG
Sbjct: 240 LVDEATLKNVPAPTDAEIANRYKLNTAVYAPSEQRSVTQVIVPTEAAARALAAEVGKGGA 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVS--LADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
A +G S L +++ + + + A G G+ + V
Sbjct: 300 LDTAARSKGLVASK--LADQTRDTLANQTSKAVADAAFAATAGTLATPAKSGLGWHVLKV 357
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+K + + + + +I + + K + + ++E+ + GT + +I++ +
Sbjct: 358 DAVKRNPGKTLDQARAEIVTALTLEKRRAALSDLAAQVEQEIDSGTGLADIAKNLGLTVQ 417
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ G A L+ F + P + + +
Sbjct: 418 TTQPLLANGTVFGKAAEKAPADIAPLVQAAFAMEREGEAQLAEIKPGEKFAIYDVGQLTA 477
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
A L + V +DW + + + + A++++ K G + K G ++
Sbjct: 478 ATPAPLAAIKDAVARDWALQQGSAKAKAAADRILAALDK-GTPLAEAVKLAGVAIPAPQP 536
Query: 534 INRMDNENKFFG---YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
I+ + ++ +F+ K N + V + + G V+ +D+
Sbjct: 537 IDMGRQQIGAMQGQVPPPLALLFAMAEGSNKRLEGPNKAGWYVVSLKDIVPGAVKREDQI 596
Query: 591 ISYLTQMMNKDLLDSVIAYLK----SQYSVTVHDNLI----QRYLDGE 630
+ ++ + + L+ + +++ I +
Sbjct: 597 FAGASRELGAVTGNEYAESLRRAIGKDLGIERNESAIKAVRNQLTGAN 644
>gi|254450375|ref|ZP_05063812.1| putative peptidyl-prolyl cis-trans isomerse [Octadecabacter
antarcticus 238]
gi|198264781|gb|EDY89051.1| putative peptidyl-prolyl cis-trans isomerse [Octadecabacter
antarcticus 238]
Length = 619
Score = 190 bits (481), Expect = 6e-46, Method: Composition-based stats.
Identities = 106/627 (16%), Positives = 232/627 (37%), Gaps = 30/627 (4%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
++ + I L +LFV + +G S ++ +VG + + + + ++ +
Sbjct: 10 KTKNFFVWIILGLLFVGLMGFGASGL---SGNLQSIGAVGDKTLSAQRYYQELQTQIRLR 66
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
S + G ++ A+ + + L +V+ +LD +GL + ++ P F G
Sbjct: 67 SAQEGRTISFPEAQDAQVPSRALQIVVAERSLDNEAAILGLSVGDRVISEQVLADPNFRG 126
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
+ F + L+R G+N +EY + +R + G G+ ++ + +F
Sbjct: 127 FEGTFDRTTYRETLSRSGMNVREYETDLREGAARALLQGAVFTGVPDPSVFGEVVAQFIR 186
Query: 188 ENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
E R+ + LN + +PS L ++ + Y + E + + + + +
Sbjct: 187 EGRTFTWAALNAADVDITLPEPSEDDLQAHYDANPNLYTSLETRELRFAWIVPSMIQDDM 246
Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGK 305
+ +EL+ EY++ +++ E R +E+LVF N + A A ++ G F QL ++G
Sbjct: 247 PVDEEELRLEYDERIDEFVQAERRLIERLVFANDEAAQTALDAINAGDTTFPQLVADRGL 306
Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
SL D+ G S + ++ G + G + ++ + + +F+
Sbjct: 307 SLDDVDGGDVSLAQLGAAG---EAVFASETGGVSGPFPTDLGPALFRMNAVLAAQNTTFE 363
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
+ + +A +++ + LA G S+D + + +V +L D+
Sbjct: 364 QALPALRETQSAARAQRLIEDQIDPITNLLAGGASLDNLVAQTDMVLGELDFTSLTTDDI 423
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
V D L DG V + + P L+++
Sbjct: 424 ---------AAYAAFRDVAATQDVGDFPELAELDDGGLFAVDVIDVRPPALIPLDDIRDQ 474
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
V W+ +TA V + A + ++F + + + N I R N
Sbjct: 475 VVAGWEAQETAAAVIAAAEAKQAQLMSAVQDFAFL----DLNAIQENNITRRGFINGT-P 529
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV------QEKDKFISYLTQMMN 599
+ VF + V+ P ENG ++ ++ E + +
Sbjct: 530 PTFLRDVFEMEIGNVRVLPTENGA--IIVRLDAITAADSSDEAYTAEVASVAESAGEGIA 587
Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+D+ + ++ + V V++
Sbjct: 588 QDIYELYSRTVQLRTDVQVNEQARNAV 614
>gi|294677876|ref|YP_003578491.1| peptidyl-prolyl cis-trans isomerase D [Rhodobacter capsulatus SB
1003]
gi|294476696|gb|ADE86084.1| peptidyl-prolyl cis-trans isomerase D [Rhodobacter capsulatus SB
1003]
Length = 609
Score = 190 bits (481), Expect = 7e-46, Method: Composition-based stats.
Identities = 121/629 (19%), Positives = 240/629 (38%), Gaps = 33/629 (5%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R + ++ + L ++ + + + + + +VG ++ + ++ +QE+
Sbjct: 2 LRSSGKSVTVWVLLAMIVLGLGGYQVGNFSNRGQS---IGAVGESEITARDYADALRQEI 58
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
++ +IG + R++GLD+ + L + A L + + L V +I +
Sbjct: 59 NAVAAQIGHPPSMSEVRAMGLDQVVQAQLFNTAALSEQARRLELSVGDAEVSRQIRSARP 118
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
F G F + + L REG+ E E+ ++R+ + G GG+ LLD
Sbjct: 119 FQGATGSFDRETYREVLRREGLTETEFETRLRADIARSILQGAVAGGVPAPAALLDGYVG 178
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
+ E R V + + ++ P A L +++ + + PE + ISY+ +
Sbjct: 179 YLGETRDVAFAEIPA-TGISLPAPDAAALKAYYDAHLAEFTRPETREISYVWLTPDMLKD 237
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF-IQLAEEQ 303
+I I +L+A Y++ K +Y PE R + +LVFP Q EA+ + G LAE +
Sbjct: 238 EIAIDEAQLRATYDERKAEYVQPERRKLAKLVFPTQAEAEAGMAKIAAGTASLADLAEAR 297
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
G S +DI LG S++ I + +++F+ G G + + PS T +
Sbjct: 298 GLSAADIDLGDVSQDEIGGAA-GEAVFARTTPGVIG-PYETDLGPALFDFQAVTPSETTT 355
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
F+E + DIA ++ + KA + + LE+ LA G +++++ + K+ GK
Sbjct: 356 FEEARGDIAAELAMEKARRMIADMTTDLEDRLASGATLEDMVKETKMQP---------GK 406
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
+ K L DG +++ A +++
Sbjct: 407 ISMAADTRDGIAAYDAFREAAAKVTTEDFPELAVLEDGGVFALRLDGVTAAAPIPFDQLR 466
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
V+ W+T + + +KA G + T + R +
Sbjct: 467 DKVEASWRTAEMVKAKQAKAEAAGAAGQT--------LAAQGLAEKTAPDLQRGGFV-EG 517
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE------KDKFISYLTQM 597
F+ + G V V K + + F + L QM
Sbjct: 518 APQGLAQTAFATAAGK--SATLTEGDKVFVVTVRAVKPADPADPELVQLRKTFDTRLIQM 575
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ DL +++ +T+ +I
Sbjct: 576 LGADLAAFYARAAQAEAGITLDSAMIAAV 604
>gi|121609649|ref|YP_997456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
eiseniae EF01-2]
gi|121554289|gb|ABM58438.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
eiseniae EF01-2]
Length = 643
Score = 190 bits (481), Expect = 7e-46, Method: Composition-based stats.
Identities = 99/645 (15%), Positives = 214/645 (33%), Gaps = 44/645 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E IRK S+ V +++ F++ G FS S V V + + + +
Sbjct: 1 MFETIRKHSK-IVMIFLFLLIIPAFVLVGTDRNYFSE-ASPVVARVDGHDISQADWDRAH 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+QE I + V++ S L+ LV LD + + L R+ +
Sbjct: 59 RQESDRIRAQS-PTVDARLLDSPLARYATLERLVRERVLDAAAQQMRLVTSDARLIRSLQ 117
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+P D D + + L +G+ + + + + ++ V+ + +N
Sbjct: 118 ETPAIAALKRADGTLDADAYRALLVGQGVTPEVFEANLRRNIAADQVLDAVLSTALVANA 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
A +E R + + P++A L +++ + +R PE + Y++
Sbjct: 178 QARLALDALYERRDIQVARFDAPDFAGRVLPTDADLQSYYDAHPAQFRQPEQATVEYLVL 237
Query: 238 DVHEKEKKIEISNDELQAEYE-KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
D+ I + DEL++ Y+ + + + R ++ K+A A + K +
Sbjct: 238 DLDSVRATITVPEDELRSYYDSDYLPRIMAKQERRASHILISVAKDAPAAEREKAKARAT 297
Query: 297 IQLAE-----------------EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
LA+ ++G + + L F++ + + KKG +
Sbjct: 298 ELLAQLRKTPADFAPLAKQSSDDKGSAAAGGDLNFFARGAMTKP--FEEAVFALKKGQIS 355
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG- 398
V+ FGY I +++IK F+E + IA ++ +A + E + +
Sbjct: 356 DVVETEFGYHIIELTDIKTPPQPGFEEARAVIAAELGQQRAQRQFAEMAESFSNAVYEQA 415
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
S+ ++ + K+ V G + A K V +
Sbjct: 416 DSLLPVADKLKLKLQSATNVSRT--PAPGAKGALASSKFLQALFAPDTLQNKRNTEAVEI 473
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
++ PA L +V V+ + K+A + + + +
Sbjct: 474 GPQQMAAGRVTSYTPASTLPLAQVRERVRSLYVAEKSAALAQQEGQAKLSAWKADPATAT 533
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKV 576
+ + + + I P + + + + Y V K+
Sbjct: 534 GLAAATEIA----------RGQGQNLPRPVIDAALRTPADALPAWTGVDLGAAGYAVVKI 583
Query: 577 TNS---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ Q + Q + + + + LK + V +
Sbjct: 584 NRVLARQAPDAQRAQQEQQQYAQWLARAEVLAYYELLKQRLKVRI 628
>gi|254439696|ref|ZP_05053190.1| hypothetical protein OA307_4566 [Octadecabacter antarcticus 307]
gi|198255142|gb|EDY79456.1| hypothetical protein OA307_4566 [Octadecabacter antarcticus 307]
Length = 619
Score = 190 bits (480), Expect = 7e-46, Method: Composition-based stats.
Identities = 108/627 (17%), Positives = 231/627 (36%), Gaps = 30/627 (4%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
++ + I L +LFV + +G S ++ +VG + + + + ++ +
Sbjct: 10 KTKNFFVWIILGLLFVGLMGFGASGL---SGNLQSIGAVGDKTLSAQRYFQELQTQIRIG 66
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
S + G ++ A+S L + L +V+ +LD +GL V ++ F G
Sbjct: 67 SSQAGRTISFPEAQSAQLPDRALQIVVAERSLDNEAAVLGLSVGDSVVSQQVLGDLNFRG 126
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
D F + L+R G+N +EY + +R + G+ D +F
Sbjct: 127 FDGTFDRTTYRETLSRNGMNVREYETGLREGAARALLQSAVYAGVPDPATYGDTVAKFVR 186
Query: 188 ENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
E R+ + L + +PS A L ++ D Y + E + + + + +
Sbjct: 187 EGRTFTWAPLTATDIEITLPEPSEADLQAHYDANPDIYTSLETRVLRFAWITPAMIQDDM 246
Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGK 305
+ DEL+AEY+ +++ E R +E+L+F N A A ++ G F QL ++G
Sbjct: 247 PVDEDELRAEYDDRIDEFVQAERRLIERLIFSNDAAAQTALDAINAGDTTFPQLVADRGL 306
Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
SL D+ G + + D + ++ GD + G + ++ + + +F+
Sbjct: 307 SLEDVDGGDVTLAELGDAG---AGVFASQTGDVSGPFMTDLGPALFRMNAVLAAQNTTFE 363
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
+ D+ +A +++ + LA G S+D + + ++ +L + D+
Sbjct: 364 DALPDLREDQSAARARRVIEDQIDPITNLLAGGASLDNLVDQTDMILGNLDYTNQTTNDI 423
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
Q + L DG V + E L+++
Sbjct: 424 AAYAAFHDVAATQDVS---------DFPELADLDDGGLFAVDVIEVRAPALIPLDDIREQ 474
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
V W+ +T V + A + ++F + + + N I R N
Sbjct: 475 VVAGWEAQETTAAVIAAAESKQAQLMSAVQDFAFL----DLNAIQDNNITRRGFINGA-P 529
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD------KFISYLTQMMN 599
++ VF + V+ P NG ++ ++ ++ + +
Sbjct: 530 RSFLTDVFEMAIGDVQVLP--NGAGAIIVRLDAITAANTSDEAYTAEVAAVAETAGEGIA 587
Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRY 626
D+ + ++ + V V++
Sbjct: 588 LDIYELYSRTVQLRTDVQVNEQARNAV 614
>gi|57239078|ref|YP_180214.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
ruminantium str. Welgevonden]
gi|58579021|ref|YP_197233.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
ruminantium str. Welgevonden]
gi|57161157|emb|CAH58070.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
ruminantium str. Welgevonden]
gi|58417647|emb|CAI26851.1| Putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
ruminantium str. Welgevonden]
Length = 630
Score = 190 bits (480), Expect = 8e-46, Method: Composition-based stats.
Identities = 107/633 (16%), Positives = 249/633 (39%), Gaps = 19/633 (3%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFSSFINSWKQELG 65
S+ + AK+ L+VL + + LFS S V +G++K+ F ++ EL
Sbjct: 2 KSKAFFAKLLLIVLICSLISVSVGVPLFSNHFSNKQYVAKIGQEKLSIEDFTTAYHDELR 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
I Q + + E+ + +L+ L+ L +F + L+ V I F
Sbjct: 62 YIQQLLNRPLTPEQIVQFNVKFSVLNRLIENKVLTKFANSLNLKVGEESVINFIKSIKYF 121
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
++ F F + L+ G+ E+ YI + ++ GG + + L
Sbjct: 122 QDENGNFDKKKFNAGLSNAGLTERLYISKLESAFPISIMMNCLFGGPQNNYLQYYPDLTK 181
Query: 186 ---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
++S ++ V N + + K + + I +
Sbjct: 182 KILQNLHQSRTVDIIEISPVINDISIPNMEELKSLYEEKKKNNSLVFPESRDIEYVTINY 241
Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
E I + + + K + +I + + + + + +
Sbjct: 242 ENFITKATVSQEEIDSEIKAEGLDDQIDILNLVFSAKSDAENALSELNNGKTFDSIVTDL 301
Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
+L I+L + +K +PD K+G+ +P++H FG+ I V+++
Sbjct: 302 AHSTLDKITLKNITKNTLPDDIRNQ--VFSLKEGEISPILHSMFGWHIIKVTSVHKISEH 359
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
QE+ K I+ ++ KA++ + + + + + + GTS+ EI++ + + D +G
Sbjct: 360 DLQELNKKISQSIKKKKATDLLLAEIEIINDKINHGTSIKEIAKLYNLPIKTI-TTDISG 418
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
++ GK+V+ + + G L++ + + V++ + AR++ +E
Sbjct: 419 YNLSGKKVSISEANPNSII-LTGFSSQLNQTSNFIDNEDYFFSVRVIKIDQAREKTFDES 477
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL--GASLLTTNQINRMDNE 540
++ +W+ + ++S +++++ K G + ++I L ++ N + +DN
Sbjct: 478 KQELVDEWQNNFKSRKLSKLTQEILIKL-KSGIDIQNIDGVLLKPNQVVYRNSVASIDNP 536
Query: 541 NKFFGYDGISQVFSGPVEMVK------CFPIENGLSYVVFK-VTNSKVGPVQEKDKFISY 593
+ + + ++++F+ + P E + V K + N + +
Sbjct: 537 GQNYPSNLVNEIFNLKKGEISKNYYDEQNPSEQKMLIAVVKDIKNPEQVSTVDLKATQEK 596
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L+ + L + +I YL ++YSV ++ LI+
Sbjct: 597 LSNNNTESLKNQLITYLTNKYSVKINRKLIENI 629
Score = 40.2 bits (91), Expect = 0.98, Method: Composition-based stats.
Identities = 22/187 (11%), Positives = 65/187 (34%), Gaps = 9/187 (4%)
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
+ + + +++ + L+E+ + + K K + + ++ +++ +
Sbjct: 332 EGEISPILHSMFGWHIIKVTSVHKISEHDLQELNKKISQSIKKKKATDLLLAEI-EIIND 390
Query: 510 YSKEGKNFRDIGKNLGASLLT-TNQINRMD------NENKFFGYDGISQVFSGPVEMVKC 562
G + ++I K + T T I+ + + ++ I FS +
Sbjct: 391 KINHGTSIKEIAKLYNLPIKTITTDISGYNLSGKKVSISEANPNSIILTGFSSQLNQTSN 450
Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
F I+N + +V + D+ L + ++ L + + + +
Sbjct: 451 F-IDNEDYFFSVRVIKIDQAREKTFDESKQELVDEWQNNFKSRKLSKLTQEILIKLKSGI 509
Query: 623 IQRYLDG 629
+ +DG
Sbjct: 510 DIQNIDG 516
>gi|58617080|ref|YP_196279.1| putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
ruminantium str. Gardel]
gi|58416692|emb|CAI27805.1| Putative peptidyl-prolyl cis-trans isomerase D [Ehrlichia
ruminantium str. Gardel]
Length = 630
Score = 189 bits (479), Expect = 1e-45, Method: Composition-based stats.
Identities = 106/633 (16%), Positives = 249/633 (39%), Gaps = 19/633 (3%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFSSFINSWKQELG 65
S+ + AK+ L+VL + + LFS S V +G++K+ F ++ EL
Sbjct: 2 KSKAFFAKLLLIVLICSLISVSVGVPLFSNHFSNKQYVAKIGQEKLSIEDFTTAYHDELR 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
I Q + + E+ + +L+ L+ L +F + L+ V I F
Sbjct: 62 YIQQLLNRPLTPEQIVQFNVKFSVLNRLIENKVLTKFANSLNLKVGEESVINFIKSIKYF 121
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
++ F F + L+ G+ E+ YI + ++ GG + + L
Sbjct: 122 QDENGNFDKKKFNAGLSNAGLTERLYISKLESAFPISIMMNCLFGGPQNNYLQYYPDLTK 181
Query: 186 ---YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
++S ++ V N + + K + + I +
Sbjct: 182 KILQNLHQSRTVDIIEISPVINDISIPNMEELKSLYEEKKKNNSLVFPESRDIEYVTINY 241
Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
E + + + K + +I + + + + + +
Sbjct: 242 ENFTTKATVSQEEIDSEIKAEGLDDQIDILNLVFSAKSDAENALSELNNGKTFDSIVTDL 301
Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
+L I+L + +K +PD K+G+ +P++H FG+ I V+++
Sbjct: 302 AHSTLDKITLKNITKNTLPDDIRNQ--VFSLKEGEISPILHSMFGWHIIKVTSVHKISEH 359
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
QE+ K I+ ++ KA++ + + + + + + GTS+ EI++ + + D +G
Sbjct: 360 DLQELNKKISQSIKKKKATDLLLAEIEIINDKINHGTSIKEIAKLYNLPIKTI-TTDISG 418
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
++ GK+V+ + + G L++ + + V++ + AR++ +E
Sbjct: 419 YNLLGKKVSISEANSNSII-LTGFSSQLNQTSNFIDNEDYFFSVRVIKIDQAREKTFDES 477
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL--GASLLTTNQINRMDNE 540
++ +W+ ++++S +++++ K G + ++I L ++ N + +DN
Sbjct: 478 KQELVDEWQNNFKSKKLSKLTQEILIKL-KSGIDIQNIDGVLLKPNQVVYRNSVASIDNP 536
Query: 541 NKFFGYDGISQVFSGPVEMVK------CFPIENGLSYVVFK-VTNSKVGPVQEKDKFISY 593
+ + + ++++F+ + P E + V K + N + +
Sbjct: 537 GQNYPSNLVNEIFNLKKGEISKNYYDEQNPSEQKMLIAVVKDIKNPEQVSTVDLKATQEK 596
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L+ + L + +I YL ++YSV ++ LI+
Sbjct: 597 LSNNNTESLKNQLITYLTNKYSVKINRKLIENI 629
Score = 41.0 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 20/187 (10%), Positives = 63/187 (33%), Gaps = 9/187 (4%)
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
+ + + +++ + L+E+ + + K K + + ++ +++ +
Sbjct: 332 EGEISPILHSMFGWHIIKVTSVHKISEHDLQELNKKISQSIKKKKATDLLLAEI-EIIND 390
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQ-------INRMDNENKFFGYDGISQVFSGPVEMVKC 562
G + ++I K + T + + + ++ I FS +
Sbjct: 391 KINHGTSIKEIAKLYNLPIKTITTDISGYNLLGKKVSISEANSNSIILTGFSSQLNQTSN 450
Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
F I+N + +V + D+ L + ++ L + + + +
Sbjct: 451 F-IDNEDYFFSVRVIKIDQAREKTFDESKQELVDEWQNNFKSKKLSKLTQEILIKLKSGI 509
Query: 623 IQRYLDG 629
+ +DG
Sbjct: 510 DIQNIDG 516
>gi|171058611|ref|YP_001790960.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
SP-6]
gi|170776056|gb|ACB34195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
SP-6]
Length = 637
Score = 189 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 92/642 (14%), Positives = 230/642 (35%), Gaps = 42/642 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + +R+ +R + +V+ FL+ G+ + + V ++ + + + + +
Sbjct: 1 MFDFVRRHNR-LLQFGLALVIVPSFLVVGIQGYDQFSASNEAVANIDGRAITQTEWDAAH 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q++ + ++ V+++ S + +K+LD+LV + + + L R+ A
Sbjct: 60 RQQVERVRAQM-PGVDAKLLDSPAIKQKVLDDLVRERVMLVAAQKLLLAPTDQRLQRLFA 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F V L G+ +++ + + V G S +
Sbjct: 119 TDPQF-ASLRNADGSVRKDLLEARGMTSEQFAQQLRQEFALRQVSLGLAGSALASPAVTA 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD--NYRAPEYKRISYILFD 238
+A +F+ R V + + + S+A +++ ++ +++PE + Y++ D
Sbjct: 178 RAMDSFFQQREVQVALFPAKDYLSKVSASDAEQQAYYDDPRNAAQFQSPETVSVEYVVLD 237
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------ 286
+ I ++ D+L+ Y++N +Y P+ R ++ +A +
Sbjct: 238 LPAVTAGINVNEDDLRKYYDENAARYEQPQERRARHILVKLDADASDDAKAKAREKAAAL 297
Query: 287 -FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ K F LA Q L ++ + + KKG+ +
Sbjct: 298 LAEVQKNRAAFADLARRQSDDPGSAAQGGDLDWIARGAMVKP--FEDAVFGLKKGELGGI 355
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ FG + V++ + +F V+ ++ ++R A ++ E ++ + ++
Sbjct: 356 VETEFGLHVIEVTDTRGGEKRAFANVRGELEAEVRKQLAQKRYAELAEQFTNLVEQEDTL 415
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
++ K+ + G +A+ E + V
Sbjct: 416 KPVADALKLELHKADKLGRVAPAQPGNVLASPKVLEAIFQ--PESLSGKRNIEPVEAAAN 473
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ ++ E PAR + L EV ++ + K A+ + + E+ + ++
Sbjct: 474 QLVAARVLEHAPARKQPLAEVGERLRNAVISEKAAKAAADDGKTKLAEWQSKPES----- 528
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE--NGLSYVVFKVTNS 579
A L ++R + + + + V P + + + G Y V K+
Sbjct: 529 ----AKLGAALVLSRTQAQGQ--PREVVDAVLRAPADKLPGWIGVELGGQGYAVIKLAKV 582
Query: 580 KVGPVQ---EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ ++ + Q+ ++ D+ L +Y V
Sbjct: 583 LAADPAATGDPERVKAQYAQLWSQAESDAYYRALSKRYKAEV 624
>gi|73666959|ref|YP_302975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia canis str.
Jake]
gi|72394100|gb|AAZ68377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia canis str.
Jake]
Length = 630
Score = 189 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 114/639 (17%), Positives = 246/639 (38%), Gaps = 31/639 (4%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVS--GSSTVVSVGRQKVPFSSFINSWKQELG 65
S+ K L++L + + F + V +G +K+ + N++ EL
Sbjct: 2 KSKGLFVKPLLIILVCSLVFIAFGTSFFPGNFNNDKYVAKIGHEKLSLQDYTNAYHDELR 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
I Q + + E+ + +L+ L+ L +F + + L+ + I F
Sbjct: 62 YIQQILNRPLTEEQIAQFNIKLSVLNKLIENKVLTKFTDSLNLKVGEKSILSHIKSIKFF 121
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM-----RPSNLLLD 180
++ F F L+ G+ E+ YI+ K ++ G + L+
Sbjct: 122 QDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPVAMLMSCLFSGTQNTYVKYHPELIK 181
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + + R++D I ++ + + + EK K R+ L +
Sbjct: 182 QILQNLHQARTIDLIEISPSTNDISVPSLDELKKLYEEKRKSGNLTFPENRVIEYLTINY 241
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ E + + + E R + LVF + EA+ A ++L +G F +
Sbjct: 242 KNFINQINVTQE---DIDNEIKTEELDEQRDILNLVFSTKNEAEAALKALNEGTDFNDVV 298
Query: 301 EEQ-GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ +I+L + K +P+ K+GD +P++H FG+ I + +I
Sbjct: 299 TNIAHTTTDNITLNNIVKNTLPNDIRGK--VFSLKEGDISPILHSMFGWHIIKIKSIHKI 356
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
T QE+ + IA ++ KA + + + + + + G S++EI++ + + D
Sbjct: 357 STEDLQELSEKIAQNIKKKKAISLLTTEIESINDKINNGASINEIAKLYNLSIKTIN-TD 415
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+GKD+ G ++ + + L+K D + V + + P+R++
Sbjct: 416 ISGKDLSGNKIKMSESNADAII-LAAFSAQLNKPSNFTDNDDYFFSVNVTKVEPSREKTF 474
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM-- 537
+E + +W+ ++++S ++V++ K+ DI G L + + R
Sbjct: 475 DESKEQLVYEWQNDLKSQKLSKLTQEVVVKL----KSGIDIHNIDGVLLNSNQMVYRNSV 530
Query: 538 ---DNENKFFGYDGISQVFSGPVEMVKCF------PIENGLSYVVFK-VTNSKVGPVQEK 587
DN + + D + ++F+ + E + + K + N+ +
Sbjct: 531 AAVDNPGQNYPTDLVDEIFNLKKGEISKSYQSSTNSSEQKMLIAILKDIKNADQVSNVDF 590
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + L + +I YL +YSV ++ NLI
Sbjct: 591 KNIQEKIANDNLESLKNQLITYLTKKYSVKINQNLIDNV 629
>gi|114569954|ref|YP_756634.1| hypothetical protein Mmar10_1404 [Maricaulis maris MCS10]
gi|114340416|gb|ABI65696.1| hypothetical protein Mmar10_1404 [Maricaulis maris MCS10]
Length = 645
Score = 189 bits (478), Expect = 1e-45, Method: Composition-based stats.
Identities = 105/632 (16%), Positives = 230/632 (36%), Gaps = 22/632 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML R +++ +A I +V+L + F I VV VG +++ ++
Sbjct: 1 MLSNFRAFAQSPIALIIIVLLVLSFAIAMPGAGGIFTGSGDAVVVVGPERISQREMATAF 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+E+ + ++ V E AR G+ ++L ++ AT+ D+GL + E+A
Sbjct: 61 NREVARLQEQ-NPDVTREMAREEGIAYQVLQQQITMATMAARARDLGLAISDVAIVSEVA 119
Query: 121 RSPLFHGK-DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F +F D + L R G+ E ++ L R+ ++ G + +
Sbjct: 120 DVPAFQNPITERFDRDTMAAALQRSGVTEDQFARDIEGDLLRSQLMATLAGFSDVPDQIA 179
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
E R + +V++ I DP++ L + ++ P + R Y +
Sbjct: 180 ATRYLVAEEQRRMTGLVIDASTADEIEDPTDETLQTFIDETLGANGEPVFTRPEYRAITL 239
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYF-------SPEIRTVEQLVFPNQKEADEAFQSLKK 292
+ I + + + Y +P R+ QL +Q AD+A L
Sbjct: 240 VRFQLDDFIRDVAVDEATLREVYDYEIATNQIGTPAYRSFTQLTVSDQAGADDAASRLAA 299
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
G+ +A E G + + IPD L +++F+++ + G FG+
Sbjct: 300 GEAPSAVAAELGLDTPLVQTD-VQQFEIPDEGLGETVFAMSAGEA--RAVEGRFGWSAVI 356
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
++ + + +F+E + + +A++ + + E A G S++ +
Sbjct: 357 ITGAEEATQPAFEEERPRLQADAARAQATDDMYDAISAFETVRATGASLEVAAEESGTPL 416
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL-PDGSYMWVQIKES 471
+ D + D + + + +++ E
Sbjct: 417 EIFQPLAVNSIDEDLQFDGERYQALAPEILPAAFDHIEGFATNLESYNETDFYTLRVDEI 476
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
I +R +LEE+ + W++++ ++ ++A + + + G + + +G T
Sbjct: 477 IQSRPFELEEIREQAESRWRSIQVDTQLQARAEDALAQL-EAGSDMEIVSLMVGGRTET- 534
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---- 587
+ + R F + ++ F+ + + G Y+V V +
Sbjct: 535 STLKR-GQTAGGFDRNAVALAFTTDPGAYEMIQVGEGQ-YLVLTVNEIIPADIAAAPAAD 592
Query: 588 -DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ LT + D++ + YL Y +T
Sbjct: 593 LAGIETSLTTELGNDIVSATREYLIRDYGITD 624
>gi|148244746|ref|YP_001219440.1| peptidyl-prolyl cis-trans isomerase D [Candidatus Vesicomyosocius
okutanii HA]
gi|146326573|dbj|BAF61716.1| peptidyl-prolyl cis-trans isomerase D [Candidatus Vesicomyosocius
okutanii HA]
Length = 615
Score = 189 bits (478), Expect = 2e-45, Method: Composition-based stats.
Identities = 108/628 (17%), Positives = 244/628 (38%), Gaps = 28/628 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML IR ++ W++ + + ++ +PF ++G+S+ S V S + F++ +
Sbjct: 1 MLVSIRNKTKGWISYLIIGLIIIPFALFGISEYFTGASNIK-VASFDGVDISKEEFLSEF 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +++ + + L + IL+ +++ L+Q + E + I
Sbjct: 60 NPQKRWLQKELDKKYDKK--FDFILKQSILNQMLNKHLLEQLSRKLSYETTTSELNNIIR 117
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ LF ++ +FS + + L G ++Y + L RT + + + L
Sbjct: 118 ANDLFK-EEGRFSLEKYKKLLRLNGYTTEKYETIKLQELRRTQIKSNLLDSAFITPSQLL 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ ++ + R YI++ + + +++ K + APE +I +I ++
Sbjct: 177 RLQKLNDQKRKFSYIIIQTDNHIKEVKVDAQSVKDFYDNKKSLFFAPEQVKIEFIELSLN 236
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
E KKI++S++EL YE +E + + E R + ++ ++ A + L G F++LA
Sbjct: 237 EIAKKIKVSDNELFNFYENEQENFTTEEERQAQHILLTDELTAQKVVTLLDNGGDFVKLA 296
Query: 301 EEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
++ + +LG F++ + + K G+ + ++ FGY I ++NI
Sbjct: 297 KQYSQDSGSKDDAGNLGFFTRGIMVPE--FEKKVFAMKSGEVSDLVKSKFGYHIIKLNNI 354
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
K SF K++I + +A + ++L TS+++I + +
Sbjct: 355 KVKTLKSFDIAKQEILDLYIQKQAQKVFYNLTEQLASLAYE-TSLEKIVDQMDLKLQVSD 413
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D + K V L + + L M ++++E + R
Sbjct: 414 FFDKRNTQLNQKIVTTAFSDMVL--------NKGENSEVLELSKDKLMVIRVREKLVKRQ 465
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN-FRDIGKNLGASLLTTNQIN 535
+ EV +++ T+ V + A +V K+ I I
Sbjct: 466 KSFSEVKSEINTHLMTLLAKTFVDNLAKNIVDLLVHNDKDTLEKIMIKNKLKWHRVGWIK 525
Query: 536 RMDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVGPVQEKDK-F 590
R N+ K +++VF+ + +V + K ++ +
Sbjct: 526 RDSNKVKT---TIVNKVFALAKPINSKSSYSAQNLERGNAIVIDLLGVKTTDIKIVNAVL 582
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
L + ++ +++ LKSQ + +
Sbjct: 583 EKSLLSFESNEVFSNILEMLKSQAEIKI 610
>gi|299770348|ref|YP_003732374.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
[Acinetobacter sp. DR1]
gi|298700436|gb|ADI91001.1| peptidyl-prolyl cis-trans isomerase precursor (PPIase) (rotamase)
[Acinetobacter sp. DR1]
Length = 621
Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats.
Identities = 98/634 (15%), Positives = 218/634 (34%), Gaps = 31/634 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ L++ P + G+ + + +V Q++ +
Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + K LD LVS L Q E +G+ ++ +A+
Sbjct: 61 SYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDTQIEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P ++ +FS ++ + L G+ + I + + + F S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTSTFSDYSLVSKVDLMQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + SN T ++ K+++ ++ + Y++
Sbjct: 178 IANLQTEQRTLHLASIKLDGYKTGLTASNQEATDYYNKHQNEFKQQSSVDVDYVVVSPSL 237
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD--------EAFQSLKKG 293
K + ELQ Y K E RTV+ ++ D E + ++ G
Sbjct: 238 MAKPAPATEAELQQAYSKFVETQKKDAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGG 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F Q A + + S + G + Y P D K G + + +GY I
Sbjct: 298 LTFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVVSLKNGQISQPVKTQYGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ S SF+ K + ++ K + + L E + S++ + +++
Sbjct: 358 EA-ETQASQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGNDSLE--AVVQEVK 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ + ++ P + LF K+ + + L +G +WV++++
Sbjct: 415 GTKVESLNGVTLATQNPYLSD-PNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDY 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
A + L + + + K K + V +K ++ E+ + + + +
Sbjct: 474 HAAGVKPLAQAMNEAKAKVIDEKARKAVQAKIATMLAEFKT--QPADQVVAKNKVAFESA 531
Query: 532 NQINRMDNENKFFGYDGISQVFSG--PVEMVKCFPIEN------GLSYVVFKVTNSKVGP 583
+R ++ + FS P + N ++ + + P
Sbjct: 532 GVFSR----SQGLKREIERAAFSATTPKPGMWSVTTANLPNELVVVAVSNVNSSAANAIP 587
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q + +L+ YLKS +
Sbjct: 588 ADQLQQLKQLYRQSRGQQILEDYSQYLKSHAKIK 621
>gi|88657679|ref|YP_507533.1| rotamase family protein [Ehrlichia chaffeensis str. Arkansas]
gi|88599136|gb|ABD44605.1| rotamase family protein [Ehrlichia chaffeensis str. Arkansas]
Length = 634
Score = 188 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 105/639 (16%), Positives = 231/639 (36%), Gaps = 25/639 (3%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFSSFINSWKQ 62
I S+ + K L++L + + F S + + +G +K+ + +++
Sbjct: 3 IHMKSKAFFVKPLLIILVCSLVFIAFGASFFPGSFNNEKYIAKIGHEKLSLQDYTSAYHD 62
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
EL I + + E+ + L+ L+ L +F + + L+ + I
Sbjct: 63 ELRYIQHVLNRPLTEEQIAQFNIKLSTLNKLIENKVLTKFADSLNLKVGENSILNHIKSI 122
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ- 181
F ++ F F L+ G+ E+ YI+ K T ++ G + +
Sbjct: 123 KFFQDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPITMLMSCLFSGTQNTYTQYHPE 182
Query: 182 --AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ +++ V+ N + + K + I +
Sbjct: 183 LIKQILQNLHQARTIDVIEISPTTNDISVPNIDELKKLYEEKRKSGNLTFPESRVIEYVT 242
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ E I +N + K K + + + + +
Sbjct: 243 IDHENFINQTNVTQEEIDNKIKADELDEQRDIFNLVFSTKNEAETALKALNEGTDFDSIV 302
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+L +I+L + K +P+ K+G+ +P++H FG+ I + NI
Sbjct: 303 TNIAHTTLDNITLFNIVKNTLPNDIRNQ--VFSLKEGEISPILHSMFGWHIIKIKNIHKI 360
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
T E+ + IA ++ KA++ + + + + + + GTS+ EI+ + VD
Sbjct: 361 STKDLAELSEKIAQNIKKKKATDLLYTEIQAINDKINNGTSIQEIAESYNLSIKTAN-VD 419
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+GKD ++ + + + L+K DG + V + + P+R++
Sbjct: 420 ISGKDPSDNKIKMLETNYDAI-VLAAFSAQLNKPSNFTDNDGYFFSVNVTKIEPSREKTF 478
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM-- 537
+E + +W+ A+++S ++V++ K+ DI G L + R
Sbjct: 479 DESKEQLVYEWQHDLKAQKLSKLTQEVVIKL----KSGIDINNIDGVLLKPNQVVYRNSV 534
Query: 538 ---DNENKFFGYDGISQVFSGPVEMVK------CFPIENGLSYVVFK-VTNSKVGPVQEK 587
DN + + D I+++F + E + + K + N+ +
Sbjct: 535 AAVDNPGQNYPSDLINEIFHLKKGEISKNYQHDISSSEQKMLIAILKDIKNADQVSNVDF 594
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + L + +IA+L +YSV ++ NLI
Sbjct: 595 KNIQEKIANDNLESLKNQLIAHLIKKYSVKINQNLIDNV 633
>gi|327398937|ref|YP_004339806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hippea maritima DSM
10411]
gi|327181566|gb|AEA33747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hippea maritima DSM
10411]
Length = 631
Score = 188 bits (475), Expect = 3e-45, Method: Composition-based stats.
Identities = 112/646 (17%), Positives = 249/646 (38%), Gaps = 39/646 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R + + +++ L GS+T + VG K+ F + ++
Sbjct: 1 MLDFLRNNIKRFAIVLWIAAAAFIIGGAYLFVRGPFTMGSNTAIEVGNTKISFQDYQKTY 60
Query: 61 KQELGMISQKI----GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
Q + G + + + + + +K +D LV A L Q + G++ + V
Sbjct: 61 NNIYNFYVQMLTQLKGGNFSDDDLKKLNIKQKAIDILVERALLLQQAKKEGIKVSNEDVL 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I + F+ + KFS + +++ L IN K+Y D L + ++ S+
Sbjct: 121 RAIESNKAFY-YNGKFSKEKYLALLKANNINPKDYEDSLKTALYIDKLKKRLFKDVKVSD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + ++D++ + + + L ++++K+K +YR P + YI+
Sbjct: 180 KDVKSFFDKNYSKINLDFVSFDISSFKSKVKVDDEKLNKFYQKHKSDYRIPTMVKFEYIV 239
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ +KKI+++++E +A Y +K+ + P V ++ ++ ++ K +
Sbjct: 240 VPLSYVKKKIKVTDNETEAFYNAHKDYFKVPLRIKVAHILISSKDNQTDSKLRKKADDVY 299
Query: 297 IQL--------------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
L + + LG +K+ + D + K+G+ +
Sbjct: 300 KLLEDKKISFKEAAKKYSSDDYTRNVGGELGYVTKDMVIDEFWNN--IIKLKRGEISKPF 357
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
FGY IA V +IK F F+ VK I + ++ KA + + ++ +
Sbjct: 358 KTKFGYHIALVEDIKKPFVRPFKSVKDQIKDYLKTNKAKKVWFVEADKIFVKIRDSKESM 417
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + K + D+ A + LL P L
Sbjct: 418 KKA--AKEFGLPFKETDYMSLKNPQTPFTAKMVQNALLSNKGALLGP-------DLSSAG 468
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
Y+ ++ + P+ ++V +KKD+ + + ++A+ ++ + K K+ +D+
Sbjct: 469 YVIYKLTDKKPSYIPPFDKVKDKIKKDYIEKQAIKLALAQADNIL-KQIKASKSLKDVAL 527
Query: 523 NLGASLLTTNQINRMDNENKF---FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+ T ++++ +KF D +S++F + G VF+VT+
Sbjct: 528 AFKLKVETVKNLSKLMPTDKFPCSLKEDIMSRIFQ--KGKGYADKCQQGKKIYVFEVTDK 585
Query: 580 KVGPVQ---EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+ K+ + L ++L+ I LK Q + ++ L
Sbjct: 586 IFDEKEFNKLKESIRNELISEKENEILEKFIDKLKKQTKIKINPKL 631
>gi|254499150|ref|ZP_05111837.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
gi|254351629|gb|EET10477.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
Length = 624
Score = 187 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 102/636 (16%), Positives = 232/636 (36%), Gaps = 35/636 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ + + + VA + ++++ + F ++G+ S +++ V+V + + +F ++
Sbjct: 1 MLQKLNERIQGVVAWLVVILIGITFTLFGVDYYFQSHQTTNSKVTVNGEPLTEQAFEINY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + +E + L ++LD +V+ + Q G + I
Sbjct: 61 RRAR---GMQDIAQMTAEDEKK--LQNQVLDQMVTNEVMVQAAHTNGFNVSLNQANAAIL 115
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F +D FS + + L+ + + + + + F+G ++
Sbjct: 116 NIPQFQ-EDGHFSSEKYQQALSAALFTQLSFQNEVKQGMLLNQQRFAFIGSSFALPDEIE 174
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + Y +NR DY+ ++ A S + ++++++ + APE + Y+L ++
Sbjct: 175 RFVKLYMQNRDYDYVTISAARFEKDAHVSPEAIADYYKQHQKEFMAPEQVSLDYVLLSMN 234
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+K I+IS+D+++ Y +N+ Y +P V ++F ++ + + K A
Sbjct: 235 NIKKHIKISDDDIKRFYNENQNNYLTPAQWQVAHILFATPEDVSKDELDQIQKKADDAYA 294
Query: 301 ---------EEQGKSLSDISLGSFSKEYIP-----DVSLADSIFSLAKKGDFTPVIHGSF 346
E+ +LSD L K +P + +L K G+ +
Sbjct: 295 ALQKDPAQFEKLVTTLSDDKLSVAEKGALPWITAGQNDYDKILSNLTKPGEISAPEKTKH 354
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEIS 405
GY I + KP S EV+ I Q+ A + ++L + S++ +S
Sbjct: 355 GYEIFKLIAYKPVTMKSLAEVETTIKEQLLAEMAQTQYAHALEQLSDLSYQSPDSLNPVS 414
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
K+ P+ AG G + + + V L + S +
Sbjct: 415 DAMKLKIEKTPVFSRAG----GNDAITKNQLVINAAFSHDVLELGNNSEPVQLDNDSVVV 470
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++ E +++ LE V + K + L+ E K +
Sbjct: 471 VRVNEHRAEKEQSLEAVQAQINKILIKQVAEAKAKELGKNLLD--PTESKEQEKLMSTHK 528
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--- 582
+ + +R ++ F+ + + YVV ++ + G
Sbjct: 529 LTWNSVEHASRDSDKADVL---INDAAFNLLRPQSRNGIVLPNGDYVVVRLKHINDGNLN 585
Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+++D + + D L +Q +
Sbjct: 586 TLDKEQQDSLVQQIEASSGMMDYDLYAKSLINQAKI 621
>gi|255318960|ref|ZP_05360185.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
SK82]
gi|262378304|ref|ZP_06071461.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
SH164]
gi|255303977|gb|EET83169.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
SK82]
gi|262299589|gb|EEY87501.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
SH164]
Length = 623
Score = 187 bits (473), Expect = 5e-45, Method: Composition-based stats.
Identities = 92/637 (14%), Positives = 216/637 (33%), Gaps = 35/637 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E RK + W+ + L++ P G+ + + +V Q++ + K
Sbjct: 1 MESFRKVIKGWLGIVLLILFLTPLAFVGIEGYFSGGNKENVAATVNGQEISKKELESLTK 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + + LD+L++ + Q E +G+ ++ +A+
Sbjct: 61 SYKEQYLNFVNG--DETLLNQPFIQQTALDHLIAQNLILQQAEKLGISLSDAQIEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P F ++ +FS ++ + L G+ + I + + + + FV S + ++Q
Sbjct: 119 QPSFQ-QNGQFSQTLYENYLRSVGLTSQGLIANLRQDHALKMLNSTFVDYTLVSKVDMNQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL-FDVH 240
E R++ + S + +++K+K++++ + + YI+
Sbjct: 178 IANLQTEQRTLFLSSIPLDEYKKNIQVSQQDIANYYQKHKNSFKQTAHVDVDYIVLSPEQ 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------FQSLK 291
K +++ ELQ Y E R V+ ++ +E + ++
Sbjct: 238 VNTKAAPVTDAELQQAYANFVEAQNKNAKREVKHILIATSDTRNENQAQKLANEVYAKIQ 297
Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKE--YIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
G F Q A + + + G + D K + + +GY
Sbjct: 298 GGTNFAQAAAQYSDDIDSKTKGGLIESYQTGVYSEAFDKAVLGLKANQISQPVKTQYGYH 357
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE- 408
I SF+ K +A +++ +K + + L E + S+D + +
Sbjct: 358 IIQAQ-TLAQNIPSFEAEKSRLAAEIQKSKVANLFTDTVNSLNEMVVSSDSLDVVPQEIK 416
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ V + V P + +F K+ + + L G +WV++
Sbjct: 417 GTRIETVKNVGLNTRHP----VLNDPSVKARIFNEDVKNGDRNVTSNLQLATGEAVWVKV 472
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
++ P + L + +K K A ++K ++ E+ + + + +
Sbjct: 473 RDYQPEGVQSLAQATPAIKTKIIDEKAAGLAAAKLKTMLDEFKT--QPAQQVLAKHKVAF 530
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG---LSYVVFKVTNS-----K 580
+ R ++ D FS + + V+ V N
Sbjct: 531 QSAGTFTR----SQGLKRDVERAAFSVAAPKSGMWSVTTAALPNELVLVAVANVNKTTSN 586
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + Q+ + L+ YLKS+ +
Sbjct: 587 ALTPEQLQELSKLYQQLRGQQELEDYTQYLKSKAKIK 623
>gi|1574034|gb|AAC22665.1| peptidyl-prolyl cis-trans isomerse, putative [Haemophilus
influenzae Rd KW20]
Length = 594
Score = 186 bits (471), Expect = 8e-45, Method: Composition-based stats.
Identities = 92/597 (15%), Positives = 218/597 (36%), Gaps = 27/597 (4%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLD 100
V + + F+N + QE + +Q+ G + L + I++ ++ L
Sbjct: 16 AKVNGEVISQQDFLNRYNQEFEIRAQREGEAFVAQSDSPEFVTALRQNIVNLMIDQELLR 75
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q+++++ L + I P F K KF + V+ L + + Y L
Sbjct: 76 QYVKELKLGVSDEMIKRAIVTDPNFQVKG-KFDNAVYQRILQQNHLTSDGYASILRASLP 134
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
+ + + +F+ R L+ A S+ + ++E
Sbjct: 135 LEQIQNGVANSEFIVPAQVKNSAEVFFQKRLARLATLSLADEMAKQSVSDDEIKTYYEAN 194
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
+ ++ PE ++ YI + +++++ E+ Y+ NK ++ + + + F N+
Sbjct: 195 QKSFVQPEQVKVQYIDLSADNISRNLQVTDVEIAQYYQDNKAQF---MTQHLAHIQFANE 251
Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
++A A++ L+KG F +A+ + + LG ++ +P + + G
Sbjct: 252 QDAKVAYEELQKGANFADVAKAKSLDKISGENGGDLGWVNENELPKAFEDAAA--ALQVG 309
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
++ I+ Y I V K S + VK IA+ +R + + K+ +
Sbjct: 310 QYSQPINVDGNYHIVLVQERKAQ---SLENVKAQIADLVRKSLMESRYFSLEKQASDKAF 366
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
+ + + + + D+ + + + + +
Sbjct: 367 EDSKSLNTA--AQAAGVKVQESDYFSRQNVPAGLNFPNVIYTIFES--DTTNVGMNSEPI 422
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
+ D + V++ + + LEE D++ K K ++ KA Q V + S+ ++
Sbjct: 423 NVGDYHTIIVRVLDRKAEGVKSLEEAKIDIETFLKRQKAENALNGKAQQAVKKLSENPES 482
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
K G + + +N++ S + + + VV +
Sbjct: 483 -----KVDGINFSSEQTFTLSENKDPILTNGIFSIAKPESSKALYQVVHNSNGDVVVVAL 537
Query: 577 TNSKVGPVQEKD--KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ G + EK+ +F L + +L +I L+ + + V+D+ I + + ++
Sbjct: 538 NKVEQGSLSEKELSQFAMQLLRSHQSELQVQLIQGLRERAKIEVNDSFINQDDEAQQ 594
>gi|283856265|ref|YP_162202.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
subsp. mobilis ZM4]
gi|283775260|gb|AAV89091.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
subsp. mobilis ZM4]
Length = 642
Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats.
Identities = 100/643 (15%), Positives = 243/643 (37%), Gaps = 31/643 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL-------SDALFSVSGSSTVVSVGRQKVPF 53
M R+ ++ A + ++ + F+ G + S T+ +G++K+
Sbjct: 1 MFAFFRRMTKNGFAMLLFGIVILAFIFTGALGGFSRFGGSGSSDKDGGTIAKIGKRKLSA 60
Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
S + +++ + Q+ +++ + G K + ++ ++ ++ ++ G+
Sbjct: 61 SEAYDYIRRDYLAVRQQ-NPSIDAMTFVASGGIGKAISGYIAAKSMSEWAKNNGIGVSQK 119
Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
V GEIA P+F G + KF +F + LA++ + + + + R ++ V G++
Sbjct: 120 MVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVRRQILIPIVAGLK 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRI 232
N + + R + + + +P P + + +++ + + Y PE +
Sbjct: 180 TPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSHIERYTLPEQR-- 237
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
++ K +++ + ++ ++ + +Y + E R + Q++ P++ A+ +
Sbjct: 238 --VIRYALVKPDEVKPTEAQIADYFKSHASEYAATEKRDLSQIILPDKAAAEALLAKIHG 295
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK--KGDFTPVIHGSFGYVI 350
G F+ A+ G S DI LG+ SKE + + ++ + G + V+H G+ I
Sbjct: 296 GLNFVAAAKTVGFSSEDIRLGTLSKEQYSEKASPEAANAAFSLGDGAVSNVLHSPLGWHI 355
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
HV I+ + +++ +I Q+ + S+ + R+++ ++ G +I+ +EK+
Sbjct: 356 VHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISNGNGFSDIAHKEKL 415
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + D + + P E D Y +
Sbjct: 416 EVVQTAPLRRDASDDQIVKSLVTPAFE--------SGKNSEPFVATITADKLYALAMVDH 467
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
I + LE+V V D + + E+ A+ L+ + +K G F + G L
Sbjct: 468 VIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDLL-KKAKSGVPFAQLAAQAGVKLPP 526
Query: 531 TNQINRMDNENKFFGYDGISQV---FSGPVEMVKCFPIENGLSYVVFK----VTNSKVGP 583
+ + F + F V P + +++ K V++
Sbjct: 527 VTPLAFRQLDLSRFQQSLPPAIIRFFELKPGEVALIPAPDESGWMLMKMERLVSSDPSKE 586
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ MM D+ + + + + +
Sbjct: 587 AGLTAAVQNQFQNMMTGDIAEQFSNAVMQKSPAEIDQAAAVQL 629
>gi|241761010|ref|ZP_04759099.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|241374629|gb|EER64090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
subsp. mobilis ATCC 10988]
Length = 642
Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 100/643 (15%), Positives = 243/643 (37%), Gaps = 31/643 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL-------SDALFSVSGSSTVVSVGRQKVPF 53
M R+ ++ A + ++ + F+ G + S T+ +G++K+
Sbjct: 1 MFAFFRRMTKNGFAMLLFGIVILAFIFTGALGGFSRFGGSGSSDKDGGTIAKIGKRKLSA 60
Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
S + +++ + Q+ +++ + G K + ++ ++ ++ ++ G+
Sbjct: 61 SEAYDYIRRDYLAVRQQ-NPSIDAMTFVASGGIGKAISGYIAAKSMSEWAKNNGIGVSQK 119
Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
V GEIA P+F G + KF +F + LA++ + + + + R ++ V G++
Sbjct: 120 MVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVRRQILIPIVAGLK 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRI 232
N + + R + + + +P P + + +++ + + Y PE +
Sbjct: 180 TPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSHIERYTLPEQR-- 237
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
++ K +++ + ++ ++ + +Y + E R + Q++ P++ A+ +
Sbjct: 238 --VIRYALVKPDEVKPTEVQIADYFKSHASEYAATEKRDLSQIILPDKAAAEALLAKIHG 295
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK--KGDFTPVIHGSFGYVI 350
G F+ A+ G S DI LG+ SKE + + ++ + G + V+H G+ I
Sbjct: 296 GLNFVAAAKTVGFSSEDIRLGALSKEQYSEKASPEAANAAFSLGDGAVSNVLHSPLGWHI 355
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
HV I+ + +++ +I Q+ + S+ + R+++ ++ G +I+ +EK+
Sbjct: 356 VHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISNGNGFSDIAHKEKL 415
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + D + + P E D Y +
Sbjct: 416 EVVQTAPLRRDASDDQIVKSLVTPAFE--------SGKNSEPFVATITADKLYALAMVDH 467
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
I + LE+V V D + + E+ A+ L+ + +K G F + G L
Sbjct: 468 VIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDLL-KKAKSGVPFAQLAAQAGVKLPP 526
Query: 531 TNQINRMDNENKFFGYDGISQV---FSGPVEMVKCFPIENGLSYVVFK----VTNSKVGP 583
+ + F + F V P + +++ K V++
Sbjct: 527 VTPLAFRQLDLSRFQQSLPPAIIRFFELKPGEVALIPAPDESGWMLMKMERLVSSDPSKE 586
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ MM D+ + + + + +
Sbjct: 587 AGLTAAVQNQFQNMMTGDIAEQFSNAVMQKSPAEIDQAAAVQL 629
>gi|260753024|ref|YP_003225917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|258552387|gb|ACV75333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 642
Score = 185 bits (468), Expect = 2e-44, Method: Composition-based stats.
Identities = 100/643 (15%), Positives = 243/643 (37%), Gaps = 31/643 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL-------SDALFSVSGSSTVVSVGRQKVPF 53
M R+ ++ A + ++ + F+ G + S T+ +G++K+
Sbjct: 1 MFAFFRRMTKNGFAMLLFGIVILAFIFTGALGGFSRFGGSGSSDKDGGTIAKIGKRKLSA 60
Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
S + +++ + Q+ +++ + G K + ++ ++ ++ ++ G+
Sbjct: 61 SEAYDYIRRDYLAVRQQ-NPSIDAMTFVASGGIGKAISGYIAAKSMSEWAKNNGIGVSQK 119
Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
V GEIA P+F G + KF +F + LA++ + + + + R ++ V G++
Sbjct: 120 MVDGEIASIPVFIGANGKFDQKLFDAVLAQQHMTADQLRSDIAEDMVRRQILIPIVAGLK 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRI 232
N + + R + + + +P P + + +++ + + Y PE +
Sbjct: 180 TPNAMAEPFARMLIQRHEGMILAIPTTVMPPSDKAPDDKAIADFYKSHIERYTLPEQR-- 237
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
++ K +++ + ++ ++ + +Y + E R + Q++ P++ A+ +
Sbjct: 238 --VIRYALVKPDEVKPTEAQIADYFKSHASEYAATEKRDLSQIILPDKAAAEALLAKIHG 295
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK--KGDFTPVIHGSFGYVI 350
G F+ A+ G S DI LG+ SKE + + ++ + G + V+H G+ I
Sbjct: 296 GLNFVAAAKTVGFSSEDIRLGALSKEQYSEKASPEAANAAFSLGDGAVSNVLHSPLGWHI 355
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
HV I+ + +++ +I Q+ + S+ + R+++ ++ G +I+ +EK+
Sbjct: 356 VHVDKIERKPAATLDQMRGEITRQLSESLTSKAMTAKINRIQDNISNGNGFSDIAHKEKL 415
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + D + + P E D Y +
Sbjct: 416 EVVQTAPLRRDASDDQIVKSLVTPAFE--------SGKNSEPFVATITADKLYALAMVDH 467
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
I + LE+V V D + + E+ A+ L+ + +K G F + G L
Sbjct: 468 VIAPAAQPLEKVKNQVVMDIRHSEMVEKSRKLADDLL-KKAKSGVPFAQLAAQAGVKLPP 526
Query: 531 TNQINRMDNENKFFGYDGISQV---FSGPVEMVKCFPIENGLSYVVFK----VTNSKVGP 583
+ + F + F V P + +++ K V++
Sbjct: 527 VTPLAFRQLDLSRFQQSLPPAIIRFFELKPGEVALIPAPDESGWMLMKMERLVSSDPSKE 586
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ MM D+ + + + + +
Sbjct: 587 AGLTAAVQNQFQNMMTGDIAEQFSNAVMQKSPAEIDQAAAVQL 629
>gi|254507758|ref|ZP_05119889.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16]
gi|219549283|gb|EED26277.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16]
Length = 364
Score = 184 bits (465), Expect = 5e-44, Method: Composition-based stats.
Identities = 73/354 (20%), Positives = 154/354 (43%), Gaps = 12/354 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + +G +T VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFVFAGVGSYIVGGAG-NTAAKVGNVEIDRGEFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ + K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPSYVESFRKSVLDRMVNDLLLEQHAASLGLRVSDAQVRT 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F D KF +++ S L R G + + ++ + L R ++
Sbjct: 120 MIVEMPQFQV-DGKFDQEIYQSSLRRAGFTPESFAEYLRRDLVRNQLLTAIQASDFSLPA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ + + R V + L A + S+ + ++E+ + Y PE +++YI
Sbjct: 179 EVEAQAKLLTQTREVQTLSLPLDDFAAKVELSDDEIQGYYEQNSERYTRPEQVKVAYIEL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--PNQKEADEAFQSLKKGKK 295
+ + I +S+++ + +E++ +KY S E R V ++ +Q +A L G
Sbjct: 239 SAQKLKDAITVSDEDAKKYFEEHLDKYSSEEQRRVSHILVEGDDQAKAQAILDELNAGTD 298
Query: 296 FIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
F LAEE+ SLG ++ + D + ++ F+L GD T ++
Sbjct: 299 FAALAEEKSDDFGSASEGGSLGWIERDVM-DPAFEEAAFALKNVGDVTGLVKSD 351
>gi|270156946|ref|ZP_06185603.1| peptidyl prolyl cis-trans isomerase D-like protein [Legionella
longbeachae D-4968]
gi|289164629|ref|YP_003454767.1| peptidyl-prolyl cis-trans isomerase D [Legionella longbeachae
NSW150]
gi|269988971|gb|EEZ95225.1| peptidyl prolyl cis-trans isomerase D-like protein [Legionella
longbeachae D-4968]
gi|288857802|emb|CBJ11647.1| putative peptidyl-prolyl cis-trans isomerase D [Legionella
longbeachae NSW150]
Length = 624
Score = 183 bits (464), Expect = 6e-44, Method: Composition-based stats.
Identities = 95/641 (14%), Positives = 226/641 (35%), Gaps = 45/641 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ + + + VA + ++++ + F ++G+ L S ++ V V + +F S+
Sbjct: 1 MLQKLNERIQGVVAWLVVILIGITFTLFGVDYYLQSRQTTNAKVVVNDFPLTLQAFDTSY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + + + A L ++LD +++ L Q G + I
Sbjct: 61 RRARA---MQDLSQLTA--ADEKKLQNQVLDQMINNEVLVQAARKNGFNVSADQANAAIL 115
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F +D FS + L + + + + + F+G +D
Sbjct: 116 SIPQFQ-EDGHFSAQKYQQALNAALFTQSSFQNEVKQGMLLNQQRFAFMGSSFALPDEID 174
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ Y ++R +Y+++ S +T ++ K+K + APE + Y+ +H
Sbjct: 175 RFVSLYMQSRDYEYLIVPVSRFEKDVQISQDAITDYYNKHKREFMAPEKVSLDYVNLSMH 234
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE--------------- 285
+ + K+ +S+D+++ YE+N+ Y +P V ++F + A++
Sbjct: 235 DIKDKVNVSDDDVKRYYEENQNNYLTPARWHVAHILFAVPQGANKDELEKIQNKANSTYL 294
Query: 286 --AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+ ++++++ + L + + + L G +
Sbjct: 295 LLQKDPKQFDHLVSKMSDDKLSVADNGVLPWIAAGQ---NEYSKLLSHLTTPGQISSPEK 351
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMD 402
GY I + + KP T EV+ I Q+ + A + + ++L + S+
Sbjct: 352 TKHGYEIFKLIDYKPVSTKPLSEVEASIKEQLVVEMAQTQYTQAMEQLSDLSYQSPDSLQ 411
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPD 460
++ + + G I +Q++ F D D + + + +
Sbjct: 412 PVADALNLKIVKTQPFSREGGAES------IAKNKQVINSAFSHDVLDLGNNSDPIQIDN 465
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
S + V++ P +++ L+ V + K + + L+ E K +D+
Sbjct: 466 DSVVVVRVNRHWPEKEQTLDAVHDRIHKILVKKEAETKAKKIGMSLLN--PGEEKQQKDL 523
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
+ + + R +++ + F+ K + + V K+ +
Sbjct: 524 IVSNQLEWKSVVKATRDNDKEDV---EINDMAFNLLRPESKDGFVLPNGDFAVVKLKHIN 580
Query: 581 VGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
G E +D + D L S +
Sbjct: 581 NGKFSELDGETQDSLTQQIEASYGMMDYDLYAKNLMSHSKI 621
>gi|90021259|ref|YP_527086.1| peptidase M20D, amidohydrolase [Saccharophagus degradans 2-40]
gi|89950859|gb|ABD80874.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus
degradans 2-40]
Length = 621
Score = 183 bits (463), Expect = 7e-44, Method: Composition-based stats.
Identities = 100/633 (15%), Positives = 213/633 (33%), Gaps = 29/633 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +R + V +V++ + ++ G+ + G + V SVG + V +
Sbjct: 1 MLQNVRDNLKNKVVFGIVVLVMLIMVVGGVGSVNLNSIGGNDVASVGGEGVSAVELGRAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ G S+ + L ++IL LV L E+ G+ A V I
Sbjct: 61 AMRKDQLLAN-GVDPTSDFVKEQNLRQQILPQLVRRKALLVTAEEAGVGAAVAEVEKTIL 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F KF + + G Y + + + S+ ++
Sbjct: 120 GQETFKV-GGKFDPQTYRRLIGNAGYLPATYKVAVAEDIILSHQSSGLADSAFVSDEEIN 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ RS I + V + + +++ + + PE + YI V
Sbjct: 179 ALVAILNQKRSFFGITIPKETVGDEVTVTPEQIEAYYQANQQEFSVPEKVSVDYIEISVA 238
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK----GKKF 296
E K I + +++A+YE+ K + + ++ + E+ + ++ G+ F
Sbjct: 239 EIAKTIAVDEADIKAQYEQEKADFVESSEYEIAHILIADGDESASKIEEVQTQLAAGEAF 298
Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
LAE SLG + P+ + ++G+ + + G
Sbjct: 299 ETLAETYSDDFGSRETGGSLGVLTTGIFPEE--FEQAVYALEEGEVSEPVTTDAGTHFIK 356
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V++ K S++E K +I ++ +A + Y LEE + + + +
Sbjct: 357 VTSKKVEALASYEERKPEIKKAIQNLRAESFYVDQYAELEELTFNAGDLTVAADQLGLTV 416
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
PL + A K + + + + M ++ +
Sbjct: 417 KQSPLFER-----NFGNGVAKEVKVRNAAFSEDVLLSGRNSPVIEISNSKAMVLRKRTHN 471
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
P LE V + +++ + +++ A + E + GK+ +++ ++LG +
Sbjct: 472 PEHIAALELVSSQIQQKLQAQAVQAKLAELAKNIQSEIA-AGKSPKEVAESLGYDIAEHE 530
Query: 533 QINRMDNENKFFGYDGISQVFSGPVE---MVKCFPIENGLSYVVFKVTNSKVGP-----V 584
+ RMD + VF V G + V+ +T + G
Sbjct: 531 LVKRMDVTAD---AQMLRAVFQMAAGSGATVFEDIEAQGGNRVLLGLTAVQPGKVEDMTE 587
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
QE+ + L + + + S+ V
Sbjct: 588 QERAALSTQLLRENANLEIAAYEEAAISKVKVK 620
>gi|262278967|ref|ZP_06056752.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
RUH2202]
gi|262259318|gb|EEY78051.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
RUH2202]
Length = 621
Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats.
Identities = 94/634 (14%), Positives = 214/634 (33%), Gaps = 31/634 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ L++ P + G+ + + +V Q++ +
Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + K LD LVS L Q E +G+ ++ +A+
Sbjct: 61 SYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDTQIEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P ++ +FS ++ + L G+ + I + + + F S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQGLISSLRQDHALKMLTSTFSDYSLVSKVDLMQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + SN T ++ K+++ ++ + Y++
Sbjct: 178 IANLQTEQRTLHLASIKLDGYKTGLTASNQEATDYYNKHQNEFKQQASVDVDYVVVSPSL 237
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD--------EAFQSLKKG 293
K + ELQ Y K E RTV+ ++ D E + ++ G
Sbjct: 238 MAKPAPATEAELQQAYSKFVETQKKDAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGG 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F Q A + + S + G + Y P D K G + + +GY I
Sbjct: 298 LTFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVVSLKNGQISQPVKTQYGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + SF+ K + ++ K + + L E + S++ + +++
Sbjct: 358 EA-ETQANQIPSFEAEKARLTAEVEKNKVATVYSDTVNSLNETIVGNDSLE--AVVQEVK 414
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ + ++ P + LF K+ + + L +G +W+++++
Sbjct: 415 GTKVESLNGVTLATQNPYLSD-PNVKIKLFNDDVKNGDRNASSNIQLANGDTVWIKVRDY 473
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
A + L + + + K K + V +K ++ E+ + + +
Sbjct: 474 HAAGVKPLAQAMNEAKAKVIDEKARKAVQAKIATMLAEFKT--QPADQVVAKNKVVFESA 531
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--------SYVVFKVTNSKVGP 583
+R ++ + FS + + + + P
Sbjct: 532 GVFSR----SQGLKREIERAAFSAATPKPGMWSVSTANLPNELVVVAVSNVNSSAVNAIP 587
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q + +L+ YLKS +
Sbjct: 588 ADQLQQLQQLYRQSRGQQILEDYSQYLKSHAKIK 621
>gi|326387876|ref|ZP_08209482.1| hypothetical protein Y88_0791 [Novosphingobium nitrogenifigens DSM
19370]
gi|326207922|gb|EGD58733.1| hypothetical protein Y88_0791 [Novosphingobium nitrogenifigens DSM
19370]
Length = 645
Score = 182 bits (460), Expect = 2e-43, Method: Composition-based stats.
Identities = 111/648 (17%), Positives = 234/648 (36%), Gaps = 20/648 (3%)
Query: 1 MLEIIRKASRTWVAKIF----LVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSS 55
ML R ++ + LV++ + F +S G V +VG +
Sbjct: 1 MLGFFRAIIKSRFGAVLGLVFLVLIVLAFAGADVSGLRTGNLFGGDDVATVGHTGISSRE 60
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ + Q+ + + S +++L L+ A + ++ + G+ +
Sbjct: 61 LDKTVRAAFDGERQRTPTLTMKDFVTSQNALEEVLSGLIDRAAVQEWGQKNGIGVSDRLI 120
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EIA+ P F G D KFS V+ +A+ G+ +K+ + K L ++ G
Sbjct: 121 DSEIAKLPAFQGPDGKFSQQVYNQLIAQRGLTDKQVREDIAKGLMGKLIMAGASEGAAMP 180
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
N + + E RS ++L ++ A ++ + +++ Y+ PE + I Y+
Sbjct: 181 NGVAQRYAELLKEKRSGGILMLPSQAFAPKAPATDQQVADFYKANIVRYQRPERRTIRYV 240
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
L D + S+ ++Q Y+ N Y E R++ Q++ P+Q A L GK
Sbjct: 241 LVDEAAIKNLGAPSDADIQKRYQANAALYAPNETRSITQVILPSQSAAQAFAADLAGGKT 300
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF--SLAKKGDFTPVIHGSFGYVIAHV 353
A K L+ + + + + + A++G G+ G+ +A V
Sbjct: 301 IEAAAA--AKGLAPAKIADRTHDQLVSDTSKAVADAVFSAQQGKLITPTKGALGWSVARV 358
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
IK + + + + +I + + + + R+ E GTS+ +I + +
Sbjct: 359 DAIKKNPGKTLDQARAEIVLALTAERHKAAMTDLAARIGEQAENGTSLTDIVKAYGLTIQ 418
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
V G + P + L+ F + + + P
Sbjct: 419 TTDPVQADGSNPAKPGDKLSPDVQGLVQAAFAMEHEGQPQVAGLPNGLRFAVFDVGAITP 478
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
A L E+ V DW + A ++ A++++ +K+ K+LG L ++
Sbjct: 479 AAPAALAEIKAQVAADWARAQGAAAAAAAADKVLAAVAKK-TPLDVAVKSLGLPLPPIDK 537
Query: 534 INRMDNENKFFGYDGISQ---VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ + + +FS K N ++V + N + G V D
Sbjct: 538 VAMTREQLTQMQPRVPAPYALMFSMTKGSAKKLAAPNQAGWLVIALDNVENGTVAPNDPL 597
Query: 591 ISYLTQMMNKDLLDSVIAYLKS--QYSV--TVHDNLI---QRYLDGEK 631
I+ + + L++ + + ++ + + L G +
Sbjct: 598 IAQAAGQLGQVAGREYADELRTAITHEIGSKRNEATLRTVREALVGAQ 645
>gi|119384865|ref|YP_915921.1| putative peptidyl-prolyl cis-trans isomerse [Paracoccus
denitrificans PD1222]
gi|119374632|gb|ABL70225.1| putative peptidyl-prolyl cis-trans isomerase [Paracoccus
denitrificans PD1222]
Length = 652
Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats.
Identities = 116/629 (18%), Positives = 245/629 (38%), Gaps = 50/629 (7%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
G++ + SVG ++ + + + E+ S + G +++ A+++G+D+ L L +
Sbjct: 30 SGGTADIGSVGGVEISAQDYARTLRAEMQEFSARTGRQISAAEAKTIGVDQAALARLYTA 89
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
A L+ +G+ V G+I F G + +F ++ L REG+ E E+
Sbjct: 90 AALEAEANRLGVSVGDQAVAGQITGIAAFRGLNGQFDRAIYADALRREGMREAEFEHDLR 149
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQ 215
++R + + G+ ++ Q + + E R + + L +P P L
Sbjct: 150 MDMARLILQDAALAGVSAPQPVVAQTQGWLLETRDIHWRELTAEDLPTPVATPDETTLQA 209
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
W + D + APE ++I+Y+ E ++E+ L+ Y+ E++ PE R VE+L
Sbjct: 210 WHKANADRFTAPEIRQITYVWLTPEMLEGEVEVDEQALRDLYQDRIEEFQQPERRMVERL 269
Query: 276 VFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
VFP A+EA + G+ F QLA E+G SL+DI LG ++ + +++F+L +
Sbjct: 270 VFPTMAAAEEAKARIDSGEVTFEQLAAERGLSLADIDLGEVARADLGSA--GEAVFALEE 327
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
G G + ++ I + F++ + D+ + + +A +++E +
Sbjct: 328 PG-VAGPASSDLGPALFSMNAILEPLDIPFEQARDDLRLEAAVDRARRQIEERAGEFADL 386
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
LA G +++++++ + + G + + A P + ++ KD P
Sbjct: 387 LAGGAALEDMAQDTPMKLGRIDWS--QGAEADPNGIDAYPEFRERAAQLTEKDFP----E 440
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
DG +++ + P E+V V +DW + + + A +L ++
Sbjct: 441 LFETEDGGVFAMRLDKIEPPALIPFEDVRDRVAEDWSRNEGHRLLLALAEELRVQAEAAA 500
Query: 515 KNFRDIGKNLGASLLT-------------------------------TNQINRMDNENKF 543
+ + + + ++R N
Sbjct: 501 EPEIEPAPAAATAPASQALGAAATGAANATGGNAPATARPAPDLGTPATNLHRGGFIN-G 559
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP------VQEKDKFISYLTQM 597
D + Q F E +++ + Q +D + L
Sbjct: 560 VPQDVVVQAFEIAEEGATEVVDAENRVFLIT-LDKIHPADTAGDEAAQIRDGISARLADS 618
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ +D+ D L+ Q VT++ +
Sbjct: 619 LRQDVFDYFARALQVQGGVTLNQTAVDAV 647
>gi|293608199|ref|ZP_06690502.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828772|gb|EFF87134.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 621
Score = 180 bits (454), Expect = 9e-43, Method: Composition-based stats.
Identities = 95/635 (14%), Positives = 211/635 (33%), Gaps = 33/635 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ L++ P + G+ + + +V Q++ +
Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + K LD LVS L Q E +G+ ++ +A+
Sbjct: 61 SYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P ++ +FS ++ + L G+ + I + + + F S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + SN T ++ K+++ ++ + Y++
Sbjct: 178 IANLQTEQRTLHLASIKLDAYKTGLTASNQEATDYYNKHQNEFKQQASVDVDYVVLSPSM 237
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD--------EAFQSLKKG 293
K + ELQ Y K E RTV+ ++ D E + ++ G
Sbjct: 238 MTKPAPATEAELQQAYAKFVETQKKDAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGG 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F Q A + + S + G + D K G + + +GY I
Sbjct: 298 LSFAQAASQFSEDPSSKAKGGLVEAYASGVFSDAFDKTVLSLKNGQVSQPVKTQYGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE-KI 410
+ + SF+ K + ++ K + + L E + S++ + +
Sbjct: 358 EA-ETQANQIPSFEAEKARLTAEVEKNKVATVYSDAVNSLNETIVGNDSLEAVVQEVKGA 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
L V A ++ + P + LF K+ + + L +G +WV++++
Sbjct: 417 KVESLNGVTLATQNP----YLSDPSVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
A + L + + + K K + +K ++ E+ + + + +
Sbjct: 473 YHAAGVKPLAQAMNEAKAKVIDAKARKAAQAKIATMLTEFKT--QPAEQVVAKNKVAFES 530
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL--------SYVVFKVTNSKVG 582
+R ++ + FS + + + + +
Sbjct: 531 AGVFSR----SQGLKREIERAAFSLATPKPGMWSVTTANLPNELVVVAVSNVNSSAANAI 586
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P + + Q + +L+ YLKS +
Sbjct: 587 PADQLQQLKQLYRQSRGQQILEDYSQYLKSHAKIK 621
>gi|42520635|ref|NP_966550.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Drosophila melanogaster]
gi|42410374|gb|AAS14484.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 602
Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats.
Identities = 113/625 (18%), Positives = 242/625 (38%), Gaps = 30/625 (4%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + K+ +V+L + G+ + L V VG++ + + + ++ I
Sbjct: 2 NVKNFFTKVTVVLLACLLIFMGIGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQI 61
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
S G + E+ + L +L+ L+ L ++GL + I + F
Sbjct: 62 S---GSDASREQVKK--LKYDLLNGLIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQN 116
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKR 184
+F + F L + EKEYI K+L + P + +Q +
Sbjct: 117 DKGEFDKNKFYETLNDLHMTEKEYIAKLEKVLPAMMFMTSLFKDNYPVTFGEKIDEQIYK 176
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
++ R VD + + V I +P + L +E+ K ++ PEY+ YI E
Sbjct: 177 SRYQTRVVDIVKITEDAVTNIPEPDDQALLDLYERNKSHFYYPEYRTAQYISLGQKYFED 236
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
+I+IS++E+ E+ + K + ++ + F Q+ EE G
Sbjct: 237 QIKISDEEVDGIIEQQELKNQRDIFNA---IFSTKEEAETARRAFEEGKTSFEQIVEEFG 293
Query: 305 KSL-SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
K+ + + + +K+++P K G+ + V+ SFG+ I V +
Sbjct: 294 KAKLEETRVNNITKDFLP--EDVREKVFALKVGEVSEVLASSFGWHIVKVESAHQISDED 351
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
++KKDI + + K+ E+V + ++ + G+ ++EI + + VD +GK
Sbjct: 352 LVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSEIEEILSEYNLPIQTIGPVDASGK 411
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
D G V +F + + V+I + P + + EE
Sbjct: 412 DQSGNNVGDSGDLISFIFSREKDQKG-----YFKGVGDAVVSVKIVDIFPPKLQSFEEGK 466
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
+ W++ E + ++ ++ ++ D+ + G L+ Q++R + +
Sbjct: 467 ALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEEIQGVELVKGQQMHRNKVDQQN 522
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKD 601
+ + + ++F+ PI+ ++ + S G + D +
Sbjct: 523 YPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNTLDTGKRVMIS----- 577
Query: 602 LLDSVIAYLKSQYSVTVHDNLIQRY 626
L + +I+YL+S+Y V V+ ++
Sbjct: 578 LKEQLISYLESKYKVEVNHAILDDI 602
>gi|294083766|ref|YP_003550523.1| Parvulin-like peptidyl-prolyl isomerase [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663338|gb|ADE38439.1| Parvulin-like peptidyl-prolyl isomerase [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 620
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 125/640 (19%), Positives = 254/640 (39%), Gaps = 30/640 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59
ML+ +R +++ + K FLV L F +WG+ D + GS VS + +
Sbjct: 1 MLQAMRSGAKSPIMKAFLVFLAGGFALWGVGDITTGLIGGSDKAVSASEESLSPREVALE 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+++ ++ A GL +I+ +L + +GL +
Sbjct: 61 FERARRNYM----PNSSTGEALQTGLLSEIVGSLSRAVIFNAENNTLGLTVTRAMQRDAV 116
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
A F + FS F+ LA GI+E EY+ L R + V G+ +
Sbjct: 117 ANETNFQDEMGSFSEGRFMQTLASAGISEAEYLGRVDSALKRDQLTRALVAGVVSNKAAD 176
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
++ + R V + I PS+A L +F + K +Y AP +
Sbjct: 177 TLLTKYELQQRVVK-MQSFAVDADNIGTPSDADLDTYFSENKSSYDAPTVRSARVGFISA 235
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
E ++IS D ++ + +++ +PE R V Q+VF + K+A+EA + +G+ F +
Sbjct: 236 TLIEADVDISEDMIKDAFGTRIDEFSTPETRVVRQMVFEDAKKANEARARVDQGEDFNAV 295
Query: 300 AEEQ-GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
A + + +D+ LG+ +++ + D ++AD++ A T + FG I V +I
Sbjct: 296 AADMLNWTDTDVMLGTVTRDGL-DGAIADAV-FDASVNVVTGPVETLFGQHILIVDDITE 353
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ ++V+ +I +R +A + + E LE+ +A G S+DE + + + +
Sbjct: 354 GGNATLEDVRDEITRTLRSEEAIDLLYERANLLEDEIASGASLDEALGKAGGKIVTINDI 413
Query: 419 DFAGKDVKGKEV--AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D G D+ G+ + + +E + +D + + V + AR
Sbjct: 414 DRNGLDIDGQPMVDDSEIAQESAIIEAIWTNDIGTLSVLQEASADIFFMVDVTTETEARP 473
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
R L+EV KDWK V+ + + A+ + + +F +I + ++ R
Sbjct: 474 RTLDEVKQRAIKDWKLVQAIKSARAAADAAIANPA----SFDNIAAS--------SKFRR 521
Query: 537 MD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK----FI 591
+ + F+ +E G + + E D
Sbjct: 522 NGLGLDHEAARLIANTAFAQANGDFD--VVETGTEAIAVMTSEIIEAEQSEIDDTNKMVA 579
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ + +D++ + L ++ + ++ +++ L G +
Sbjct: 580 DIMKNAITEDVISFMAIKLSQEHDLQINIEPVRQLLVGSQ 619
>gi|239994001|ref|ZP_04714525.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Alteromonas
macleodii ATCC 27126]
Length = 528
Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats.
Identities = 91/538 (16%), Positives = 193/538 (35%), Gaps = 26/538 (4%)
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q D+GL ++ I + P F +F ++ F + L + G ++ D+ ++
Sbjct: 1 QQATDMGLRVSDKQIRETITQMPEFQ-FGGQFDNERFQAILRQNGFQVADFRDYLRVQMT 59
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
+ + + + QA + R Y+++++ + ++A + ++
Sbjct: 60 QNQLAAALTNSSFALDGEVQQANALQRQTRDAKYVLVSSDEFAGSIEVTDADVEAFYNNN 119
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
++ E +++Y+ V + + ++ + + ++ YE N Y E R V ++
Sbjct: 120 IASFDTDEQVKLAYVKLSVDDLKDRVSVDEEAVRTYYENNLGSYGKEEERRVSHILIEAG 179
Query: 281 KEADEA-------FQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIF 330
+AD A L G F LAE G F + D + ++ F
Sbjct: 180 DDADAAKAKAESLKAELDNGADFAALAEADSDDTFSAENGGDLDFITPEMMDPAFDEAAF 239
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+L GD + V+ FG+ I ++++K + SF EV +I + + A EK E
Sbjct: 240 ALQNVGDVSDVVETEFGFHIIKLTDLKEAQVKSFDEVAGEIRDTLLYDAAMEKYFELQNT 299
Query: 391 LEE-FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
L E + ++++ + + + + + + D
Sbjct: 300 LAEIAFEVPDTLEDAANAVDLPVQESVVFSRNTAPADLSFPGLL-----DVAFSSELIDE 354
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
+ L D + + ++ E P R + LEEV ++ K K+ E + A + +
Sbjct: 355 GLNSDIIELDDETVVVARVIEHQPQRTQSLEEVREGIEASVKAEKSKEAAEAWAFDIAQK 414
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-- 567
+ G++ S T + R + +FS +E +
Sbjct: 415 -VRAGESVESELAEKSVSWETAAAVPRAG---GTLARALVDTLFSLALEGEDKVDVATTV 470
Query: 568 GLSYVVFKVTNSKVGPVQEKD---KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
V + N P E + L Q+ + + I L++ VT+ L
Sbjct: 471 NGDVAVVMLENVNAAPELENELGESLKQRLAQVQGQRVYQQYIDALRANAEVTISQTL 528
>gi|58584787|ref|YP_198360.1| parvulin-like peptidyl-prolyl isomerase, PPID [Wolbachia
endosymbiont strain TRS of Brugia malayi]
gi|58419103|gb|AAW71118.1| Parvulin-like peptidyl-prolyl isomerase, PPID [Wolbachia
endosymbiont strain TRS of Brugia malayi]
Length = 602
Score = 178 bits (449), Expect = 3e-42, Method: Composition-based stats.
Identities = 99/620 (15%), Positives = 222/620 (35%), Gaps = 24/620 (3%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + K+ V+L + G+ + L + V VG++ + + ++ I
Sbjct: 2 NVKNFFTKVTAVILTCLLIFTGVGNFLSDENKKEEVARVGKEVITLGEYKLLYQSYGKQI 61
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
S G ++ E+ + L +L+ L+ L I D+GL + I + F
Sbjct: 62 S---GSDISEEQVKR--LKYDLLNALIEQKLLFNLISDLGLVVGEESIKDHIRNTKYFQN 116
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
KF + F L + E EY+ K+L + P ++ Y
Sbjct: 117 DKGKFDKEKFHEALNSLHMTEGEYVAKLEKILPAIMFITSLFHDNYPVTFGEKIDEQIYK 176
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
+ + A+ + + + Y+ N Y + ++
Sbjct: 177 NRHQTRVVNIVKITQNAVTNVTEPDDRVLLDLYEKNKSHFYYPEYRTAQYISLGQKYFAN 236
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
+ + K++ + + + ++ + + F Q+ E+ GK+
Sbjct: 237 QIQISDREVDDIIKQQELKDQRDIFNLIFYTKEEAETARKEFEEDKVSFEQIVEKFGKTK 296
Query: 308 -SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
+ + + +K+ +P K G+ + V+ SFG+ I V + + +
Sbjct: 297 LEETRINNITKDSLP--EDMREKVFALKVGEVSEVLASSFGWHIIKVDSAHQISNENLVD 354
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
+KK+I + K+ EKV + ++ + G +++ IS + + +D +GKD
Sbjct: 355 LKKNIKLVLTNQKSFEKVNDFINQVNYKIYNGATIEGISSEYNLPMQTIGPIDASGKDQS 414
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
G V + +F + + V+I +P + + EE
Sbjct: 415 GNSVESSSDLVSFIFSREKDQKG-----YFKGVGDAVVSVKIVNIVPPKLQSFEEGKALA 469
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
W+ E++ ++ ++ D+ K G L+ QI+R + + + +
Sbjct: 470 IDLWRNGFIKEKMFKIGQEVAARLKEK----ADLKKTQGIELIKDQQIHRNEVGQQSYPF 525
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKDLLD 604
I ++F+ P+++ +V + S G + D + L +
Sbjct: 526 SFIEEIFNMKTIGSVTDPVQHNNEVIVGVLKEMYSSSGKLNTFDTGKRVMIS-----LKE 580
Query: 605 SVIAYLKSQYSVTVHDNLIQ 624
+I+YL+S+Y V V+ ++
Sbjct: 581 QLISYLESKYKVKVNHAILD 600
>gi|296112838|ref|YP_003626776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis RH4]
gi|295920532|gb|ADG60883.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis RH4]
gi|326561505|gb|EGE11849.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis 46P47B1]
gi|326567538|gb|EGE17653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis BC1]
gi|326571415|gb|EGE21430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis BC7]
Length = 617
Score = 177 bits (447), Expect = 6e-42, Method: Composition-based stats.
Identities = 100/636 (15%), Positives = 217/636 (34%), Gaps = 34/636 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E +R ++W ++ LV +P G+ + ++ VG Q V ++F
Sbjct: 1 MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
E + ++ V++ L + IL L A L+ +G+ + +
Sbjct: 61 AERNALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQH 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+FH + +FS+D F + L + G+ + LS ++ VG N + +
Sbjct: 118 YEVFHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSK 176
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R V + + S+A + +F++++D P +SYI
Sbjct: 177 LIDLQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIEL-DPN 235
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ---SLKKGKKFIQ 298
+ E+ A+Y + + R + Q++ + A + L G+ F
Sbjct: 236 VLSVGTPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEA 295
Query: 299 LAEEQGKSL---SDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+ + +GSF+ + + + S G + + FGY I V+
Sbjct: 296 LAKAHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + T + ++ + ++ K + + ++ G + +I++ +
Sbjct: 356 KV-SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQ 414
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ + A+P + +WVQ
Sbjct: 415 IIA------YPQTNNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKNVWVQPTNYEAE 468
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R +E +K+ K E + A ++ E G A + T+ I
Sbjct: 469 RPLTFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANI 519
Query: 535 NRMDNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKD 588
N ++ +F S V E G S +V V N ++
Sbjct: 520 GMTTRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRL 579
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++ + + D L+ + YL+ + ++ + ++
Sbjct: 580 RAVAVIRDNVGADQLEDYVHYLRESSELVINQDALK 615
>gi|326577521|gb|EGE27401.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis O35E]
Length = 617
Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats.
Identities = 100/636 (15%), Positives = 216/636 (33%), Gaps = 34/636 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E +R ++W ++ LV +P G+ + ++ VG Q V ++F
Sbjct: 1 MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
E + ++ V++ L + IL L A L+ +G+ + +
Sbjct: 61 AERNALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQH 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+FH + +FS+D F + L + G+ + LS ++ VG N + +
Sbjct: 118 YEVFHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSK 176
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R V + + S+A + +F++++D P +SYI
Sbjct: 177 LIDLQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIEL-DPN 235
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ---SLKKGKKFIQ 298
+ E+ A+Y + + R + Q++ + A + L G+ F
Sbjct: 236 VLSVGTPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEA 295
Query: 299 LAEEQGKSL---SDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+ + +GSF+ + + + S G + + FGY I V+
Sbjct: 296 LAKAHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ T + ++ + ++ K + + ++ G + +I++ +
Sbjct: 356 KA-SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQ 414
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ + A+P + +WVQ
Sbjct: 415 IIA------YPQTNNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKNVWVQPTNYEAE 468
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R +E +K+ K E + A ++ E G A + T+ I
Sbjct: 469 RPLTFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANI 519
Query: 535 NRMDNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKD 588
N ++ +F S V E G S +V V N ++
Sbjct: 520 GMTTRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRL 579
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++ + + D L+ + YL+ + ++ + ++
Sbjct: 580 RAVAVIRDNVGADQLEDYVHYLRESSELVINQDALK 615
>gi|326576612|gb|EGE26519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis 101P30B1]
Length = 617
Score = 176 bits (446), Expect = 8e-42, Method: Composition-based stats.
Identities = 100/636 (15%), Positives = 217/636 (34%), Gaps = 34/636 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E +R ++W ++ LV +P G+ + ++ VG Q V ++F
Sbjct: 1 MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
E + ++ V++ L + IL L A L+ +G+ + +
Sbjct: 61 AERNALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQH 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+FH + +FS+D F + L + G+ + LS ++ VG N + +
Sbjct: 118 YEVFHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSK 176
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R V + + S+A + +F++++D P +SYI
Sbjct: 177 LIDLQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIEL-DPN 235
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ---SLKKGKKFIQ 298
+ E+ A+Y + + R + Q++ + A + L G+ F
Sbjct: 236 VLSVGTPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEA 295
Query: 299 LAEEQGKSL---SDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+ + +GSF+ + + + S G + + FGY I V+
Sbjct: 296 LAKAHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + T + ++ + ++ K + + ++ G + +I++ +
Sbjct: 356 KV-SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQ 414
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ + A+P + +WVQ
Sbjct: 415 IIA------YPQTNNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKNVWVQPTNYEAE 468
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R +E +K+ K E + A ++ E G A + T+ I
Sbjct: 469 RPLTFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMNTSANI 519
Query: 535 NRMDNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKD 588
N ++ +F S V E G S +V V N ++
Sbjct: 520 GMTTRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRL 579
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++ + + D L+ + YL+ + ++ + ++
Sbjct: 580 RAVAVIRDNVGADQLEDYVHYLRESSELVINQDALK 615
>gi|326566698|gb|EGE16837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis 103P14B1]
Length = 617
Score = 176 bits (444), Expect = 1e-41, Method: Composition-based stats.
Identities = 101/636 (15%), Positives = 218/636 (34%), Gaps = 34/636 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E +R ++W ++ LV +P G+ + ++ VG Q V ++F
Sbjct: 1 MENMRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVN 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
E + ++ V++ L + IL L A L+ +G+ + +
Sbjct: 61 AERNALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQH 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+FH + +FS+D F + L + G+ + LS ++ VG N + +
Sbjct: 118 YEVFHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSK 176
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R V + + S+A + +F++++D P +SYI
Sbjct: 177 LIDLQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIEL-DPN 235
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ---SLKKGKKFIQ 298
+ E+ A+Y + + R + Q++ + A + L G+ F
Sbjct: 236 VLSVGTPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEA 295
Query: 299 LAEEQGKSL---SDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA+ + +GSF+ + + + S G + + FGY I V+
Sbjct: 296 LAKAHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVT 355
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + T + ++ + ++ K + + ++ G + +I++ +
Sbjct: 356 KV-SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQ 414
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ + A+P + +WVQ
Sbjct: 415 IIA------YPQTNNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKNVWVQPTNYEAE 468
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
R +E +K+ K E + A ++ E G A + T+ I
Sbjct: 469 RPLTFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMNTSANI 519
Query: 535 NRMDNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVV-FKVTNSKVGPVQEKDKF 590
N ++ +F S V E G S +V V +S + D+
Sbjct: 520 GMTTRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRL 579
Query: 591 --ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
++ + + D L+ + YL+ + ++ + ++
Sbjct: 580 HAVAVIRDNVGADQLEDYVHYLRESSELVINQDALK 615
>gi|301632869|ref|XP_002945502.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Xenopus
(Silurana) tropicalis]
Length = 638
Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats.
Identities = 91/541 (16%), Positives = 200/541 (36%), Gaps = 28/541 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IRK S+ + + +++ F++ G+ FS S V V + S + N+
Sbjct: 63 MLESIRKHSK-FGMILLFLLVIPSFVLVGIDRNYFSE-SSPVVARVNGHDIKQSDWDNTH 120
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E I + V+++ + L+ +V + ++ + + A R+ +
Sbjct: 121 RMESDRIRAQS-PSVDAKLLDTPQARYATLERMVRDRVMTAAVQKMHIVASDARLASALK 179
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P D D + + + +G+ + + + L+ + V+G + +
Sbjct: 180 DIPAIAALKRPDGSLDADAYRALVGAQGMTPEGFEANMRHDLAISQVLGGVLQSAFSTEG 239
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
A F+ R + N + PS+A L +++ +++ PE + Y++
Sbjct: 240 QFKLAMDALFQRREIQVARFNAQDFAGKVAPSDADLQTFYQSRTAHFQQPEEASVEYLVL 299
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ I +S D+L+ Y++N+E+ E R ++ ++A + K +
Sbjct: 300 DLDAVRAGITLSEDDLRTYYQENRERLAGKEERRASHILVNATQDAPAQERETAKARAQE 359
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + S LG F++ + + +KGD +
Sbjct: 360 LLAQVRQNPGGFAGIAKKNSQDSGSAPSGGDLGFFARGAMVKP--FEDAVFSMQKGDVSD 417
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
V+ FGY I ++++K SF++ + + +++ +A + E +
Sbjct: 418 VVESDFGYHIIQLTDVKTPQPPSFEQARAKLEAELKQQQAQSQFTEAAEAFSNGVYEQAD 477
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ + + K+ V +A + E L + V +
Sbjct: 478 SLQPTAEKLKLKVQTAQHVTRTPAPTVQGPLAHADFLEALFSS--ESIENKRNTEAVEVG 535
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
G + +I + PAR +EV V+ + K K N++ + +
Sbjct: 536 PGMRVSGRIVQYAPARTLPYDEVRDRVRTMFVAEKAQGYAVVKVNRVQPREATKQAEEEA 595
Query: 520 I 520
Sbjct: 596 A 596
Score = 65.6 bits (157), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 58/252 (23%), Gaps = 45/252 (17%)
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D G F V D Y +Q+ +
Sbjct: 374 IAKKNSQDSGSAPSGGDLGFFARGAMVKPFEDAVFSMQKGDVSDVVESDFGYHIIQLTDV 433
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ E+ ++ + K + + + A ++ + + + L + T
Sbjct: 434 KTPQPPSFEQARAKLEAELKQQQAQSQFTEAAEAFSNGVYEQADSLQPTAEKLKLKVQTA 493
Query: 532 NQINRMDNENKFFG---YDGISQVFS---------------------------------G 555
+ R D + +FS
Sbjct: 494 QHVTRTPAPTVQGPLAHADFLEALFSSESIENKRNTEAVEVGPGMRVSGRIVQYAPARTL 553
Query: 556 PVEMV-----KCFPIENGLSYVVFKVTNSKVGPV----QEKDKFISYLTQMMNKDLLDSV 606
P + V F E Y V KV + +E+ Q + +
Sbjct: 554 PYDEVRDRVRTMFVAEKAQGYAVVKVNRVQPREATKQAEEEAAQRQQFQQWLGTAEGIAY 613
Query: 607 IAYLKSQYSVTV 618
LK ++ V +
Sbjct: 614 YEMLKERFKVQI 625
>gi|301594637|ref|ZP_07239645.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii AB059]
Length = 606
Score = 175 bits (442), Expect = 2e-41, Method: Composition-based stats.
Identities = 100/619 (16%), Positives = 211/619 (34%), Gaps = 31/619 (5%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
LV+ P + G+ + + +V Q + ++ + +
Sbjct: 1 LLVLFLTPLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQRYKEQYLAAVKG--D 58
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+ K LD LVS L Q E +G+ ++ +A+ P ++ +FS +
Sbjct: 59 ESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQQPSLQ-ENGQFSQKL 117
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ + L G+ + I + + + F S + L Q E R++
Sbjct: 118 YENYLRSIGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQIANLQTEQRTLHLAS 177
Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
+ A SN T ++ K+++ ++ P + Y++ K ++ EL+
Sbjct: 178 IKLDPYKAGLTASNQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQA 237
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ--------SLKKGKKFIQLAEEQGKSLS 308
Y K E R V+ ++ D A Q ++ G F Q A + + +
Sbjct: 238 YAKFVETQQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPT 297
Query: 309 DISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
+ G + Y P D K G + + +GY I + + SF+
Sbjct: 298 SKTKGGLVEAYAPGVFSDAFDKTVLSLKNGQISQPVKTQYGYHIIEA-ETQANQIPSFEA 356
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
K + ++ K + + L E + S+D + +++ + ++ +
Sbjct: 357 EKPRLIAEVEKNKVASVYSDTVNSLNETIVGNDSLD--AVVQQVKGTKIESLNGVTLATQ 414
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
++ P + LF K+ + + L +G +WV++++ A + L + + +V
Sbjct: 415 NPYLSD-PNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEV 473
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
K K + +K ++ E+ + + + + R ++
Sbjct: 474 KAKVIDEKARKAAQAKIATMLTEFKT--QPAEQVVAKNKVAFESAGVFTR----SQGLKR 527
Query: 547 DGISQVFSGPVEM-----VKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQMM 598
FS P V + N L V NS P + + Q
Sbjct: 528 AIERAAFSVPAPKPGMWSVTTANLPNELVVVAVSNVNSAAVNAMPADQLQQLKQLYRQSR 587
Query: 599 NKDLLDSVIAYLKSQYSVT 617
+ +L+ YLKS +
Sbjct: 588 GQQILEDYSEYLKSHAKIK 606
>gi|326561079|gb|EGE11444.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis 7169]
Length = 614
Score = 175 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 99/633 (15%), Positives = 215/633 (33%), Gaps = 34/633 (5%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R ++W ++ LV +P G+ + ++ VG Q V ++F E
Sbjct: 1 MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVNAER 60
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ ++ V++ L + IL L A L+ +G+ + + +
Sbjct: 61 NALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 117
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
FH + +FS+D F + L + G+ + LS ++ VG N + +
Sbjct: 118 FHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLID 176
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
E R V + + S+A + +F++++D P +SYI
Sbjct: 177 LQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIEL-DPNVLS 235
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ---SLKKGKKFIQLAE 301
+ E+ A+Y + + R + Q++ + A + L G+ F LA+
Sbjct: 236 VGTPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAK 295
Query: 302 EQGKSL---SDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ +GSF+ + + + S G + + FGY I V+ +
Sbjct: 296 AHSDDPSGSNGGVIGSFNPSVFGEYAASVEQALSGLSVGQISQPVQTGFGYHIFKVTKV- 354
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ T + ++ + ++ K + + ++ G + +I++ + +
Sbjct: 355 SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQIIA 414
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ A+P + +WVQ R
Sbjct: 415 ------YPQTNNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKNVWVQPTNYKAERPL 468
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+E +K+ K E + A ++ E G A + T+ I
Sbjct: 469 TFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANIGMT 519
Query: 538 DNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFI 591
N ++ +F S V E G S +V V N ++ + +
Sbjct: 520 TRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRLRAV 579
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + + D L+ + YL+ + ++ + ++
Sbjct: 580 AVIRDNVGADQLEDYVHYLRESSELVINQDALK 612
>gi|326565373|gb|EGE15551.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis 12P80B1]
Length = 614
Score = 175 bits (441), Expect = 3e-41, Method: Composition-based stats.
Identities = 99/633 (15%), Positives = 215/633 (33%), Gaps = 34/633 (5%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R ++W ++ LV +P G+ + ++ VG Q V ++F E
Sbjct: 1 MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHTIQPNELIKVGNQVVDVATFQAEVNAER 60
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ ++ V++ L + IL L A L+ +G+ + + +
Sbjct: 61 NALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 117
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
FH + +FS+D F + L + G+ + LS ++ VG N + +
Sbjct: 118 FHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLID 176
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
E R V + + S+A + +F++++D P +SYI
Sbjct: 177 LQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIEL-DPNVLS 235
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ---SLKKGKKFIQLAE 301
+ E+ A+Y + + R + Q++ + A + L G+ F LA+
Sbjct: 236 VGTPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAK 295
Query: 302 EQGKSL---SDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ +GSF+ + + + S G + + FGY I V+ +
Sbjct: 296 AHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVTKVS 355
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ T + ++ + ++ K + + ++ G + +I++ + +
Sbjct: 356 -NDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQIIA 414
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ A+P + +WVQ R
Sbjct: 415 ------YPQTNNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKNVWVQPTNYEAERPL 468
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+E +K+ K E + A ++ E G A + T+ I
Sbjct: 469 TFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANIGMT 519
Query: 538 DNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFI 591
N ++ +F S V E G S +V V N ++ + +
Sbjct: 520 TRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRLRAV 579
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + + D L+ + YL+ + ++ + ++
Sbjct: 580 AVIRDNVGADQLEDYVHYLRESSELVINQDALK 612
>gi|149928383|ref|ZP_01916623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
MED105]
gi|149822918|gb|EDM82164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
MED105]
Length = 633
Score = 174 bits (440), Expect = 4e-41, Method: Composition-based stats.
Identities = 119/646 (18%), Positives = 241/646 (37%), Gaps = 38/646 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
E IR + + + L+ + F ++GL + ++ + VG + F +
Sbjct: 1 FEFIRNNQK-IMQFVLLLFIAPAFALFGLEGYNTVSADANALAIVGDYPISQEEFDQVKR 59
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + G + + S +++++LD LV L Q ++ L A + +IAR
Sbjct: 60 ERIEEARAQSGENFDPKVFESPEINRQLLDTLVLQYLLQQSVQKQYLTASDKALAEDIAR 119
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+PLF D KF + + LA G+ ++ + L+R V+ + L Q
Sbjct: 120 TPLFQV-DGKFDLETYKRELAARGLTPTQHEANVRFGLARNQVLDPVLRASFFPETLKTQ 178
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
R V ++ A ++ + ++E K + AP+ + Y++
Sbjct: 179 LDDVQLAGRVVRVKNIDLAPYLANVSITDEQVAAFYETNKAQFMAPQKADVEYVVLSPDT 238
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSL 290
+ KIE+S+ ++ A YE+NK ++ +PE R ++ +KE A +
Sbjct: 239 IKSKIEVSDADIAAYYEQNKARFSTPEERRARHILLDAEKEGASADDLKAAAEKVLAELK 298
Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
KF +LA++ LG F K + ++ KKG+ + ++ F
Sbjct: 299 ANPSKFAELAKQYSIDPGSANQGGDLGFFGKGAMV-PEFEQAV-FSQKKGELSGLVKSQF 356
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
GY I V+ I+ + ++VK IA++++ K + + + R E + G E
Sbjct: 357 GYHIVEVTEIRGGEVQALEDVKTQIADEIKNQKMTAQFADAQGRFTELVYEGGQSFENV- 415
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW- 465
+ ++ + F G + +++ +F D +K++T A+ G M
Sbjct: 416 ---VKALGVQAQTFNGLTQGAANAPEVLKDAKVIAEIFSSDSIENKNNTKAVQVGETMVS 472
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+I A R LEE+ ++ K + A+ A+ L + E
Sbjct: 473 ARIVNYTAAAARPLEEMKPVIQARLKQEEAAKAALKDADALAAKLDSEKPQAGSDLLTGF 532
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF--PIENGLSYVVFKVT------ 577
A T + ++ + V + V + Y V V
Sbjct: 533 ADSKTVSALS-----AEGLPGLVAQSVLNTGVSELPKAKVIGLGNNGYAVAWVESSAPSS 587
Query: 578 NSKVGPVQEKDKFISYLT-QMMNKDLLDSVIAYLKSQYSVTVHDNL 622
K + ++ + Q+ + LL + +K + V +
Sbjct: 588 EVKAKADPQVVQYYENIAGQVYQEALLLAARDAMKKRVEVEIKKTF 633
>gi|326575303|gb|EGE25231.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis CO72]
Length = 614
Score = 174 bits (439), Expect = 4e-41, Method: Composition-based stats.
Identities = 99/633 (15%), Positives = 215/633 (33%), Gaps = 34/633 (5%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R ++W ++ LV +P G+ + ++ VG Q V ++F E
Sbjct: 1 MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVNAER 60
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ ++ V++ L + IL L A L+ +G+ + + +
Sbjct: 61 NALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 117
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
FH + +FS+D F + L + G+ + LS ++ VG N + +
Sbjct: 118 FHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLID 176
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
E R V + + S+A + +F++++D P +SYI
Sbjct: 177 LQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIEL-DPNVLS 235
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ---SLKKGKKFIQLAE 301
+ E+ A+Y + + R + Q++ + A + L G+ F LA+
Sbjct: 236 VGTPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAK 295
Query: 302 EQGKSL---SDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ +GSF+ + + + S G + + FGY I V+ +
Sbjct: 296 AHSDDPSGSNGGVIGSFNPSVFGEYAAGVEQALSGLSVGQISQPVQTGFGYHIFKVTKV- 354
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ T + ++ + ++ K + + ++ G + +I++ + +
Sbjct: 355 SNDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQIIA 414
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ A+P + +WVQ R
Sbjct: 415 ------YPQTNNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKNVWVQPTNYEAERPL 468
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+E +K+ K E + A ++ E G A + T+ I
Sbjct: 469 TFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANIGMT 519
Query: 538 DNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFI 591
N ++ +F S V E G S +V V N ++ + +
Sbjct: 520 TRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRLRAV 579
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + + D L+ + YL+ + ++ + ++
Sbjct: 580 AVIRDNVGADQLEDYVHYLRESSELVINQDALK 612
>gi|326569386|gb|EGE19446.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis BC8]
Length = 614
Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats.
Identities = 100/633 (15%), Positives = 216/633 (34%), Gaps = 34/633 (5%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R ++W ++ LV +P G+ + ++ VG Q V ++F E
Sbjct: 1 MRNFLKSWPGRLVLVGTLIPMAFLGVGTFGGHAIQPNELIKVGNQVVDVATFQAEVNAER 60
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ ++ V++ L + IL L A L+ +G+ + + +
Sbjct: 61 NALIEQ---GVDASLINEHALQQLILKRLTDKALLENQASYLGMTVSDEMITQILQHYEV 117
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
FH + +FS+D F + L + G+ + LS ++ VG N + +
Sbjct: 118 FHD-NGQFSNDRFAAYLQQNGLTKDVLFAIERLRLSLRQLITGIVGTAIYPNSEVSKLID 176
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
E R V + + S+A + +F++++D P +SYI
Sbjct: 177 LQLEAREVWVHRYHWQDYVDQVQISDAQIQAYFDEHQDKLIKPATVDLSYIEL-DPNVLS 235
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ---SLKKGKKFIQLAE 301
+ E+ A+Y + + R + Q++ + A + L G+ F LA+
Sbjct: 236 VGTPTEQEINAQYANYLRENGITDGRELAQILLTGPDAQNRAAKIQSKLNAGESFEALAK 295
Query: 302 EQGKSL---SDISLGSFSKEYIPD-VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ +GSF+ + + + S G + + FGY I V+ +
Sbjct: 296 AHSDDPSGSNGGVIGSFNPSVFGEYAAGVERALSGLSVGQISQPVQTGFGYHIFKVTKVS 355
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ T + ++ + ++ K + + ++ G + +I++ + +
Sbjct: 356 -NDTPNIASMRDQLMDRAAKLKRDQAFADLSAKINTMATDGMGVADIAKEAGVQVKQIIA 414
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ A+P + +WVQ R
Sbjct: 415 ------YPQTNNTTALPQPAVIAAAFDDFTIQDQGVSPNISLGEKNVWVQPTNYEAERPL 468
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+E +K+ K E + A ++ E G A + T+ I
Sbjct: 469 TFDEAKAQIKQTLAKQKAIELAMADAKKVADEAKNSGVT---------ALMTTSANIGMT 519
Query: 538 DNENKFFGYDGISQVF---SGPVEMVKCFPIENGLSYVV-FKVTNSKVGPVQEKDKF--I 591
N ++ +F S V E G S +V V +S + D+ +
Sbjct: 520 TRMNPLLSPLELASLFLNRSAEGYDVWAVQTEEGASVIVGGVVNDSSESQLSATDRLHAV 579
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + + D L+ + YL+ + ++ + ++
Sbjct: 580 AVIRDNVGADQLEDYVHYLRESSELVINQDALK 612
>gi|319779411|ref|YP_004130324.1| hypothetical protein TEQUI_1261 [Taylorella equigenitalis MCE9]
gi|317109435|gb|ADU92181.1| hypothetical protein TEQUI_1261 [Taylorella equigenitalis MCE9]
Length = 644
Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats.
Identities = 103/638 (16%), Positives = 214/638 (33%), Gaps = 31/638 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE RK S+ WV I ++++ F+ +G S +V V ++K+ F SW
Sbjct: 1 MLEFFRKHSK-WVLFIIIILIVPSFVFFGTSKYSGMSISEKPLVKVNKEKITERQFNKSW 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ L + ++G + L+ +V + Q V IA
Sbjct: 60 TERLNSLRDQLGNNFKVSEIDTPANRNLWLNKIVDDILITQTANKNKFFGSDSMVRSAIA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F D KFS + + + L I +EY ++ VV + L+
Sbjct: 120 LDPKF-AVDGKFSMENYNAFLTSANITSQEYENYLRANTGINLVVEPLINSTLVPLTTLE 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ K+ + R V + N L W++K +
Sbjct: 179 ELKKHVTKTREVQTKIFANEDFINAVSVDEKELEDWYKKNSEEKYRVPEYVNVEYFLLNQ 238
Query: 241 EKEKKIEISNDE--LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ + +E L++ YE NK ++ + E R V + +++ A ++ LK +
Sbjct: 239 KAAVDLVPQPNEDALKSYYENNKNRFSTEERRFVRHIQLDSEERAKAIYEELKTTPNKFE 298
Query: 299 -----LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+ + G + LG K IP + K T + + I V
Sbjct: 299 EFVLSDSLDAGTKNNKGELGFLKKSDIPGIEN---TVFALDKPGITGPVKLGNSFHIFDV 355
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVS 412
I+ + SF+E+K + N++++ AS+K E L + + I+ ++
Sbjct: 356 VQIEKAKVKSFEELKDTLVNEVKLQIASDKFAELSTNLTNLVHDRSDDLKTIAEDLQLQV 415
Query: 413 IDLPLVDFAGKDVK-------GKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSY 463
+ + +G E+ I +++ + + + + + +
Sbjct: 416 SQVFGLSKSGLISDVPNQMVLSDELKKIFNSPRVIDTAYSSEVYNQGQNSGVIEISPSEF 475
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ +I + + ++ +L+ V V +D++ K AE ++ + Y
Sbjct: 476 LVFKILDKVESKVPELKAVKAKVTRDYQLEKGAELAKKAGDEFINIYKNNPSEAPKASDG 535
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN-GLSYVVFKVTNSKVG 582
+ + V + P + + + Y V +V +
Sbjct: 536 SSLLRDPIET----SIFASNLPENLMRDVMAIPNDKLPTYVAGEVPDGYAVVRVIKDAIP 591
Query: 583 PVQEKDKFISY----LTQMMNKDLLDSVIAYLKSQYSV 616
+ F + ++ + DS A L+ V
Sbjct: 592 DERMVRVFEQQFPIIVKNGVSAQVGDSYKASLRKTNKV 629
>gi|94969792|ref|YP_591840.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Koribacter versatilis Ellin345]
gi|94551842|gb|ABF41766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Koribacter versatilis Ellin345]
Length = 654
Score = 171 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 99/666 (14%), Positives = 222/666 (33%), Gaps = 58/666 (8%)
Query: 1 MLEIIR--KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV------VSVGRQKVP 52
M+ ++ ++ V L V+ V ++ + G +TV V + +
Sbjct: 1 MIRFLQTPSKTKKIVLGGLLTVICVMMVVTLIPGGGIFGFGDTTVTGDSDLAKVDGEAIT 60
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
+ + + Q+ L + ++ L+ + +GL
Sbjct: 61 AADASKAAQNMAQQ--QRYPAQFVP------FLMPQAVEMLIKQKAVLDEAHRMGLNVSD 112
Query: 113 GRVWGEIARSPL----FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
+ + + F + ++ + ++ K + + G+
Sbjct: 113 EELRAVLHKGQFGEILFPKGNYVGDDAYQNFVQSQFSMTVPQFELELKKSIEIQKLRGVV 172
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP- 227
++ +D R DY L+ + +PS+A + W+E +KD ++
Sbjct: 173 EASATVADADIDNLVRQQQTKVKFDYASLSLADIEKGINPSDAEMKAWYEAHKDQFKDSL 232
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK------ 281
KR + + K ++ S+ ++Q Y +K ++ P+ TV+ ++ +
Sbjct: 233 PEKRKIKYVSVIGSKLPGVQPSDADIQKYYNDHKTEFTIPQTATVQHILVMVPQGADAKT 292
Query: 282 ------EADEAFQSLKKGKKFIQLAEEQGKSLSDIS--LGSFSKEYIPDVSLADSIFSLA 333
+A++ + + G F +LA++ L + + D+
Sbjct: 293 DAAAKAKAEDYLKQARGGANFGELAKKYSDDKGTGDSTLEVTPQGNLVK-EFKDASL-AG 350
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
K GD + FGY I + +P+ S EVK IA M KA++ ++ L
Sbjct: 351 KTGDILGPVKTQFGYHIIKIQKNEPAGARSLDEVKSQIAIVMGGQKAADAAQKAADNLRN 410
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
+ + + DF + + P +F+ K
Sbjct: 411 SARVQGLDKAAA----AAGDTVETTDFVTQSSLLPGIGQAPQFMNAVFKANAKSGADVAP 466
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
T G Y ++ + P E+ V++ +K K + KA +L E
Sbjct: 467 IT-----GGYAVYEVTDVQPPATPTFEQAKAQVEQQFKAGKAQTLIVQKAQELADRARTE 521
Query: 514 GKNFRDIGKNLGASLLTTNQINRMD--NENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571
+ + K G ++ T+ + + + + VF+G + P++ G +
Sbjct: 522 -HDLKKAAKEAGVTVKTSEMVTQSSQVPDVGSLSGPSFTAVFAGKTGDI-IGPVQGGRNA 579
Query: 572 VVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYL----KSQYSVTVHDNLI 623
+V V + E K++ L ++L+ ++ L + + + I
Sbjct: 580 IVIAVVEKQEPTADEMTKGKEEARQQLLAKKKDEVLEIYVSNLIASMEKSGKIKRNKKAI 639
Query: 624 QRYLDG 629
+R G
Sbjct: 640 ERLSQG 645
>gi|58697113|ref|ZP_00372552.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Drosophila simulans]
gi|225630407|ref|YP_002727198.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia sp. wRi]
gi|58536595|gb|EAL59930.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Drosophila simulans]
gi|225592388|gb|ACN95407.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia sp. wRi]
Length = 599
Score = 171 bits (431), Expect = 4e-40, Method: Composition-based stats.
Identities = 113/625 (18%), Positives = 242/625 (38%), Gaps = 33/625 (5%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + K+ +V+L + G+ + L V VG++ + + + ++ I
Sbjct: 2 NVKNFFTKVTVVLLACLLIFVGVGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQI 61
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
S G + E+ + L +L+ L+ L ++GL + I + F
Sbjct: 62 S---GSDASREQVKK--LKYDLLNALIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQN 116
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKR 184
+F + F L + EKEYI K+L + P + +Q
Sbjct: 117 DKGEFDKNKFHETLNDLHMTEKEYIAKLEKILPAMMFMTSLFKDNYPVTFGEKIDEQIYN 176
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
++ R VD + + V I +P + L +E+ K ++ PEY+ YI + E
Sbjct: 177 SRYQTRVVDIVKITEDAVTNIPEPDDQTLLDLYERNKSHFYYPEYRTAQYISLEQKYFED 236
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
+I+IS++E+ E+ + + + ++ + F Q+ EE G
Sbjct: 237 QIKISDEEVDGIIEQQELRDQRDIFN---IIFSTKEEAETARRAFEEGKTSFEQIVEEFG 293
Query: 305 KSL-SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
K+ + + + +K+++P K G+ + V+ SFG+ I V +
Sbjct: 294 KAELEETRVNNITKDFLP--EDMREKVFALKVGEVSEVLASSFGWHIIKVESAHQISDED 351
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
++KKDI + + K+ E+V + ++ + G++++EI + + VD +GK
Sbjct: 352 LVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSAIEEILSEYNLPIQTIGPVDASGK 411
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
D G V +F + + V+I + +P + + EE
Sbjct: 412 DQSGNNVGDSSDLISFIFSREKDQKG-----YFKGVGDAVVSVKIIDIVPPKSQSFEEGR 466
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
+ W++ E + + ++ ++ D K G L+ Q++R + +
Sbjct: 467 ASAVELWQSEFIKERMFKIGQEFAVQLREK----TDWEKIQGVELVEDQQMHRNE---QN 519
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKD 601
+ + + ++F+ PI+ ++ + S G + D +
Sbjct: 520 YPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNMLDTGKRVMIS----- 574
Query: 602 LLDSVIAYLKSQYSVTVHDNLIQRY 626
L + +I+YL+S+Y V V+ ++
Sbjct: 575 LKEQLISYLESKYKVEVNHAILDDI 599
>gi|78222137|ref|YP_383884.1| hypothetical protein Gmet_0917 [Geobacter metallireducens GS-15]
gi|78193392|gb|ABB31159.1| conserved hypothetical protein [Geobacter metallireducens GS-15]
Length = 549
Score = 170 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 99/532 (18%), Positives = 197/532 (37%), Gaps = 35/532 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
ML I+RK ++ V K+ ++ + F+ +WG D + S V V R KV +
Sbjct: 22 MLGIMRKYKQSIVIKVVFGLIVLSFIGTIFLVWGKGDGGLTPSS--YAVKVDRTKVSYEE 79
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
F ++ + + +Q G + E + + L K+ LD+L+ A L + +D+G++ V
Sbjct: 80 FQRTYYRLRDIYTQIYGPALTPEVEKQLNLKKQALDSLIDAALLRKAAKDMGVKVSEEEV 139
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
IA P F K+ F + + L + KE+ L ++ +
Sbjct: 140 QKAIAAIPAFQ-KNGAFDSAQYFAVLKANRLAPKEFEAGQKDELMVKKAQDQIKAKVQVT 198
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ Q + + ++ + + + S+ LT + K ++ ++ PE +SY+
Sbjct: 199 DDAARQLYKKRNDRLNLQFTSFSPEELKGEIKLSDQELTDFLAKNQNEFKTPEQISVSYV 258
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYF-----------SPEIRTVEQLVFPNQKEAD 284
L D + K+E++ ++Q+ Y+KN ++Y +++ Q + QK +
Sbjct: 259 LADPAKLAGKVEVTEADIQSWYQKNIDRYQGKGGILPLAEVKEQVKADAQRFYAGQKAYE 318
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF-----SLAKKGDFT 339
A S+ K K LA + +S P +LA L K+ +
Sbjct: 319 LAAASVNKHKTAGDLAAVARELGVAVSETPLFTAKAPAPALAGEKEVLTRAFLLKQNELG 378
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
+ G I + KPS +++ + + + +A E K+ + + LA G
Sbjct: 379 GPVETPKGIYILKLKERKPSDVPPLAQIRAKVEERAKAVRAVELAKKKAEEAQAKLAKGD 438
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + F K V I +L+ F D
Sbjct: 439 -------TAGLKLQETGSFAFDAK----GNVPVIGTSPELMEAAFTLTDKAPAPQAPVKI 487
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
++ ++KE +K++ K EE+ +L +
Sbjct: 488 GNRWVAFRLKERTELNAAAFPAEKEKIKQELLPKKQEEELQKWLKELRAKAK 539
Score = 89.5 bits (219), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/486 (10%), Positives = 129/486 (26%), Gaps = 24/486 (4%)
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
Y + D+ G + + + +D +L S
Sbjct: 77 YEEFQRTYYRLRDIYTQIYGPALTPEVEKQLNLKKQALDSLIDAALLRKAAKDMGVKVSE 136
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ + + + Y + E + K + +++
Sbjct: 137 EEVQKAIAAIPAFQKNGAFDSAQYFAVLKANRLAPKEFEAGQKDELMVKKAQDQIKAKVQ 196
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE-QGKSLSDISLGSFSKEYIPDVSLADSI 329
+ K+ ++ +L E + + ++
Sbjct: 197 VTDDAARQLYKKRNDRLNLQFTSFSPEELKGEIKLSDQELTDFLAKNQNEFKTPEQISVS 256
Query: 330 FSLAKKGDFTPVIHG---SFGYVIAHVSNIKPSF--TVSFQEVKKDIANQMRITKASEKV 384
+ LA + + + EVK+ + + A +K
Sbjct: 257 YVLADPAKLAGKVEVTEADIQSWYQKNIDRYQGKGGILPLAEVKEQVKADAQRFYAGQKA 316
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
E + ++R + + PL K A E+ +
Sbjct: 317 YELAAASVNKHKTAGDLAAVARELGVAVSETPLFTA-------KAPAPALAGEKEVLTRA 369
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
V P G Y+ ++KE P+ L ++ V++ K V+ E KA
Sbjct: 370 FLLKQNELGGPVETPKGIYIL-KLKERKPSDVPPLAQIRAKVEERAKAVRAVELAKKKAE 428
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCF 563
+ + +K + + + + + + F+
Sbjct: 429 EAQAKLAKGDTAGLKLQETGSFAFDAKGNV-----PVIGTSPELMEAAFTLTDKAPAPQA 483
Query: 564 PIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
P++ G +V F++ EK+K L ++ L + L+++ + ++
Sbjct: 484 PVKIGNRWVAFRLKERTELNAAAFPAEKEKIKQELLPKKQEEELQKWLKELRAKAKIEIN 543
Query: 620 DNLIQR 625
L +
Sbjct: 544 PALKDQ 549
>gi|23010100|ref|ZP_00050908.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
magnetotacticum MS-1]
Length = 287
Score = 170 bits (429), Expect = 7e-40, Method: Composition-based stats.
Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 5/235 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSF 56
ML+ IR AS+ W+ K+ L V+ FLI G++ + F SSTV +VG+ +
Sbjct: 1 MLQSIRNASQHWLGKVVLTVI-FTFLIAGVAIFGVEEFFRGGSSSTVATVGKTPISAEEV 59
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ +L ++ + ++ARS+GL++++L L++ A LDQ D+GL V
Sbjct: 60 RTAYQNQLQRYQAQLKRTLTPDQARSLGLERQVLSQLITEAALDQKTTDLGLAVSDAAVL 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I P F + F +F L R G+NE ++ +++R + V +
Sbjct: 120 RAIQDEPSFKNANGTFDRVLFYQTLQRAGLNEAMFVREQRSVIARLQLADAIVAELPVPQ 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
+ + R+ E RS + L I DPS L+ +++ K ++RAPEY+R
Sbjct: 180 AIREAVHRYSTERRSAAVLTLAPSAAGEIPDPSEEELSAYYDNNKASFRAPEYRR 234
>gi|319638362|ref|ZP_07993124.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
gi|317400111|gb|EFV80770.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
Length = 617
Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats.
Identities = 99/633 (15%), Positives = 217/633 (34%), Gaps = 49/633 (7%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
A+I L ++ + F+ +G ++ S GS +V VG +KV + + + E Q G
Sbjct: 12 AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAGN 64
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
S + +L+ A L Q + +G+ ++ I P FH KFS
Sbjct: 65 NAPS--------RDAVFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D+ L + + E ++++ + +++ + G S+ Q R++
Sbjct: 117 QDLLKKYLDQRRMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ A +A L +++E +K +Y P+ ++ Y+ + + +K +S +E+
Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALSIKDLAEKQTVSAEEV 236
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFIQLAEE 302
Q Y+ + + + F +LA +
Sbjct: 237 QKAYDSKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDSFAELAAK 296
Query: 303 QGKS----LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
K +LG SK + F+L K G+ + + S GY + V N+
Sbjct: 297 YSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKAAFALGK-GEVSDTVKSSLGYHVIKVLNV 355
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ + ++ K I +++ KA+ ++L E S + + +
Sbjct: 356 EAE--PTLEQAKARIEAALKLKKAASAFNAAKEKLGEDTFNDPSSLAKAVANS--GLKVE 411
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+D G + A +P +A+ + + ++ KE +
Sbjct: 412 SLD-EWVTKAGAKEAGLPEALINAAFSDDVLKKKHNSEVIAINNDTVWVIRAKEVREEKI 470
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
EV V+ + + + KA + + K +Q++
Sbjct: 471 APFAEVKDTVRAAYLRSEAVKLAEKKAQETLAALKAG--------KTADVQWSPVSQLSA 522
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQEKD--KFISY 593
D + + + PV + + G+ V+ +V + +
Sbjct: 523 QDARKTMSPEAYAALLKARPVGGKPAYTLLEGMPAPVIMEVQSVSAPENADSQIPASKQA 582
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L Q ++ ++ D+++ YL + T +
Sbjct: 583 LVQQLSANVFDALLQYLDKKIDRTQGAQQVNNA 615
>gi|255021292|ref|ZP_05293340.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
ATCC 51756]
gi|254969155|gb|EET26669.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
ATCC 51756]
Length = 516
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 79/500 (15%), Positives = 168/500 (33%), Gaps = 15/500 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59
ML+ RK S++W AKI L V+ + F++WG+S LFS SG V V K+ + F
Sbjct: 1 MLDAFRKLSQSWAAKIVLAVIALSFVLWGVSGYLFSNDSGEQVVAKVDGDKISAAIFQQR 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+Q G ++ A+ +L+ L+ L +GL+ + +I
Sbjct: 61 LHDAREHYAQVFGPEAAAQMAKDPSFAPDVLNGLIDNLLLAHEARKLGLQVPDSALAQKI 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
F K KFS + L G+ ++ + + + S
Sbjct: 121 EGISAFADKG-KFSRAKYQEVLRANGLTPVKFEAMLRDSMLLEQLQAVPQILAVASRKDA 179
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ A + E R + + R A P++A + ++++++ +Y P + Y+ F
Sbjct: 180 ESAWSWSQEYRDARVVQIPVRSFLKAATPTDAEVQSYYQQHQSDYALPAQVEVQYVTFGP 239
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ ++ + + SPE+ Q+ K ++ K +
Sbjct: 240 KDFDQSHGSGTAATASASSPAPSQ-GSPELAFESQIENFKDKLFSDSGSLAGVAKAYGLK 298
Query: 300 AEEQGKSLSDISL--GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
E+ G + + G F+ D++ + ++ + + + H+ +
Sbjct: 299 IEDSGTLTAGKTPSSGVFADPKALDLAFSKAVLAGKNSSALRLP---NGDLLAVHLLHYT 355
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P + Q V+ +IA + KA K + L + ++
Sbjct: 356 PPRSQDLQAVRSEIAATLAERKARRLAKARAQELLDAAEKSRDPKDLDPDGSYPEKRYSD 415
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
+ P +F + + + Y + I P +
Sbjct: 416 LARHSAAGLD------PSLMNAIFLAPAPEGQGAPSFGMVEQKVGYALYAVTRVILPNQA 469
Query: 477 RKLEEVLTDVKKDWKTVKTA 496
V ++++ + +
Sbjct: 470 LLNPSVTQEIQRSLEEQRAR 489
Score = 83.4 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/386 (11%), Positives = 112/386 (29%), Gaps = 20/386 (5%)
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
E+ K+ + ++ + + E + +
Sbjct: 137 YQEVLRANGLTPVKFEAMLRDSMLLEQLQAVPQILAVASRKDAESAWSWSQEYRDARVVQ 196
Query: 310 ISLGSFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSF-GYVIAHVSNIKPSFTVSFQEV 367
I + SF K P D + + + + S T +
Sbjct: 197 IPVRSFLKAATPTDAEVQSYYQQHQSDYALPAQVEVQYVTFGPKDFDQSHGSGTAATASA 256
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
+Q A E E++K + S+ +++ + D + G
Sbjct: 257 SSPAPSQGSPELAFESQIENFKDK--LFSDSGSLAGVAKAYGLKIEDSGTLTAGKTPSSG 314
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
V + LP+G + V + P R + L+ V +++
Sbjct: 315 VFADPKALDLAFSKAVLA----GKNSSALRLPNGDLLAVHLLHYTPPRSQDLQAVRSEIA 370
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
K ++A +L+ K ++ +D+ + + + R
Sbjct: 371 ATLAERKARRLAKARAQELLDAAEKS-RDPKDLDPDGSYPEKRYSDLARHS--AAGLDPS 427
Query: 548 GISQVFSGPVEMVKCFP----IENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMM 598
++ +F P + P +E + Y ++ VT + + L +
Sbjct: 428 LMNAIFLAPAPEGQGAPSFGMVEQKVGYALYAVTRVILPNQALLNPSVTQEIQRSLEEQR 487
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ L + L+ + + +H+++++
Sbjct: 488 ARLLTTGYLQALRHKAHIRIHEDVLK 513
>gi|325122070|gb|ADY81593.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
calcoaceticus PHEA-2]
Length = 582
Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats.
Identities = 94/593 (15%), Positives = 201/593 (33%), Gaps = 28/593 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E R + W+ K+ L++ P + G+ + + +V Q++ +
Sbjct: 1 MESFRTVIKGWLGKVLLILFLTPLALVGIEGYFNRGNKADVAKTVNGQEISKKDLETLTQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + K LD LVS L Q E +G+ ++ +A+
Sbjct: 61 SYKEQYLAAVKG--DESLLNLPVIQAKALDILVSRNLLIQQAEKLGISLSDAQIEQMLAQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P ++ +FS ++ + L G+ + I + + + F S + L Q
Sbjct: 119 QPSLQ-ENGQFSQKLYENYLRSIGMTSQGLIASLRQDHALKMLTSTFADYSLVSKVDLMQ 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E R++ + SN T ++ K+++ ++ + Y++
Sbjct: 178 IANLQTEQRTLHLASIKLDAYKTGLTASNQEATDYYNKHQNEFKQQASVDVDYVVLSPSM 237
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD--------EAFQSLKKG 293
K + ELQ Y K E RTV+ ++ D E + ++ G
Sbjct: 238 MAKPAPATEAELQQAYAKFVETQKKDAKRTVKHILITTDARDDAAAQKLAKEVYAKIQGG 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F Q A + + S + G + Y P D K G + + +GY I
Sbjct: 298 LSFAQAASQFSEDPSSKAKGGLVEAYAPGVFSDAFDKTVLSLKNGQVSQPVKTQYGYHII 357
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE-KI 410
+ + SF+ K + ++ K + + L E + S++ + +
Sbjct: 358 EA-ETQANQIPSFEAEKARLTAEVEKNKVATVYSDAVNSLNETIVGNDSLEAVVQEVKGA 416
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
L V A ++ + P + LF K+ + + L +G +WV++++
Sbjct: 417 KVESLNGVTLATQNP----YLSDPSVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRD 472
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
A + L + + + K K + +K ++ E+ + + + +
Sbjct: 473 YHAAGVKPLAQAMNEAKAKVIDAKARKAAQAKIATMLTEFKT--QPADQVVAKNKVAFES 530
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG---LSYVVFKVTNSK 580
R ++ + FS + + VV V+N
Sbjct: 531 AGVFTR----SQGLKREIERAAFSLATPKPGMWSVTTANLPNELVVVAVSNVN 579
>gi|241758711|ref|ZP_04756824.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
gi|241320919|gb|EER57132.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
Length = 617
Score = 168 bits (423), Expect = 3e-39, Method: Composition-based stats.
Identities = 101/633 (15%), Positives = 218/633 (34%), Gaps = 49/633 (7%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
A+I L ++ + F+ +G ++ S GS +V VG +KV + + + E Q G
Sbjct: 12 AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAGN 64
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
S I +L+ A L Q + +G+ ++ I P FH KFS
Sbjct: 65 NAPS--------RDAIFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D+ L + + E ++++ + +++ + G S+ Q R++
Sbjct: 117 QDLLKKYLDQRKMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ A +A L +++E +K +Y P+ ++ Y+ ++ + K +S +E+
Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQTVSAEEV 236
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-----------LKKGKKFIQLAEE 302
Q Y+ + + + F +LA +
Sbjct: 237 QKAYDSKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDAFAELAAK 296
Query: 303 QGKS----LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
K +LG SK + F+L K G+ + I S GY + V N+
Sbjct: 297 YSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKAAFALGK-GEVSDTIKSSLGYHVIKVLNV 355
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ T+ + + + A +++ AS K E+ +S+ + + + +L
Sbjct: 356 EAEPTLEQAKARIEAALKLK-KAASAFNAAKEKLGEDTFNDPSSLAKAAANSGLKVENLD 414
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
G + A +P +A+ + + ++ KE +
Sbjct: 415 E----WVTKAGAKEAGLPETLINAAFSDDVLKKKHNSEVIAINNETVWVIRAKEVREEKI 470
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
EV V+ + + + KA + + K +Q++
Sbjct: 471 APFAEVKDTVRAAYLRSEATKLAEKKAQETLAALKTG--------KAADVQWSPVSQLSA 522
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQEKD--KFISY 593
D + + + PV + + G+ V+ +V + +
Sbjct: 523 QDARKTMSPEAYAALLKARPVGGKPAYALLEGMPAPVIMEVQSVSAPENADSQIPAAKQA 582
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L Q ++ ++ D+++ YL + T +
Sbjct: 583 LVQQLSANVFDNLLQYLGKKIDRTQGAQQVNNA 615
>gi|298368785|ref|ZP_06980103.1| peptidyl-prolyl cis-trans isomerase [Neisseria sp. oral taxon 014
str. F0314]
gi|298282788|gb|EFI24275.1| peptidyl-prolyl cis-trans isomerase [Neisseria sp. oral taxon 014
str. F0314]
Length = 610
Score = 168 bits (423), Expect = 4e-39, Method: Composition-based stats.
Identities = 96/627 (15%), Positives = 213/627 (33%), Gaps = 44/627 (7%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
A+I L ++ + F+ +G+S + S +V VG QK+ + + ++
Sbjct: 12 AQILLGLIALTFVGFGVSTV--ANPDSDYIVKVGNQKISDHDLNLAMQNIQASGGEQP-- 67
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ +L+ A L Q + +G+ ++ I P FH + KFS
Sbjct: 68 ------------RDAVFQSLLQRAYLTQGAKQMGIAVSQEQIKQIIVDDPSFHDANGKFS 115
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ L + ++E ++++ ++ + G S++ Q R+V
Sbjct: 116 QALLTQYLNQRRMSEDQFVEEIRDQFLFQNLQNLVQNGTIVSDVQAAQLVNIAQATRTVR 175
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ N +A+L ++++ K +Y P+ +I + K +S+ EL
Sbjct: 176 SVTFNPEAFAGQIKVDDAILQRYYDANKKDYIIPQAVKIELVALTTQALADKQTVSDAEL 235
Query: 254 QAEYEKNKEK-------YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
+ ++K + + + + E+ + K F LA++ K
Sbjct: 236 RQAFDKLPPRREIAHILFPVAQDASAEERAAAKAEAEKVLAMVKAKPSDFPALAKQYSKD 295
Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
+ +LG K+ ++ FS+ K G+ + V+ ++GY I + NI
Sbjct: 296 PASASNGGNLGFMPKDGGLGAEFENAAFSMQK-GEISNVVQTAYGYHIIKILNI--QDKP 352
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
F++ K ++ ++++ KA+ ++L E + ++ K + +++ L D
Sbjct: 353 VFEQEKAELEKELKLKKAAAGFNAAKEKLGEAAFNNP--NSLAEAAKALGLEVKLSD-EW 409
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
A +P + + + D + V++KE R EV
Sbjct: 410 LTKANGAAAGMPQELINAVFSDDVLKKKHNSEPITINDNTVWVVRVKEVREERTAPFAEV 469
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
DV+ + + + KA + + K ++
Sbjct: 470 KDDVRAAYLRSEAVKLAEKKARAALADLQAGKKT--------ELQWSPVTKLTAEQARQS 521
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGP--VQEKDKFISYLTQMMN 599
+ P + + + GL V+ +V Q+ L Q
Sbjct: 522 MPPEAYSELAKARPSKDKPAYVMLQGLPAPVIVEVQAVTPPENVAQQIPAAKQLLMQQQV 581
Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++++ YL I
Sbjct: 582 NSTFNNLLRYLSKNIDRKEGGQKINAA 608
>gi|322508302|gb|ADX03756.1| ppiD [Acinetobacter baumannii 1656-2]
Length = 601
Score = 167 bits (421), Expect = 5e-39, Method: Composition-based stats.
Identities = 97/612 (15%), Positives = 209/612 (34%), Gaps = 31/612 (5%)
Query: 24 PFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV 83
P + G+ + + +V Q + ++ + +
Sbjct: 3 PLALVGIEGYFNRGNKADVAKTVNGQDISKKDLETLTQRYKEQYLAAVKG--DESLLNLP 60
Query: 84 GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
+ K LD LVS L Q E +G+ + ++ +A+ P ++ +FS ++ + L
Sbjct: 61 VIQAKALDILVSRNLLIQQAEKLGISLSNAQIEQMLAQQPSLQ-ENGQFSQKLYENYLRS 119
Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
G+ + I + + + F S + L Q E R++ +
Sbjct: 120 IGMTSEGLIASLRQDHALKMLTSTFADYSLVSKVDLMQIANLQTEQRTLHLASIKLDPYK 179
Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
A S+ T ++ K+++ ++ P + Y++ K ++ EL+ Y K E
Sbjct: 180 AGLTASDQEATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAKFVET 239
Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQ--------SLKKGKKFIQLAEEQGKSLSDISLGSF 315
R V+ ++ D A Q ++ G F Q A + + + + G
Sbjct: 240 QQKDAKRIVKHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGL 299
Query: 316 SKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ Y P D K G + + +GY I + + SF+ K +
Sbjct: 300 VEAYAPGVFSDAFDKTVLSLKNGQISQPVKTQYGYHIIEA-ETQANQIPSFEAEKPRLIA 358
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
++ K + + L E + S+D + +++ + ++ + ++
Sbjct: 359 EVEKNKVASVYSDTVNSLNETIVGNDSLD--AVVQQVKGTKIESLNGVTLATQNPYLSD- 415
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
P + LF K+ + + L +G +WV++++ A + L + + +VK
Sbjct: 416 PNVKIKLFNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEVKAKVIDE 475
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
K + +K ++ E+ + + + + R ++ F
Sbjct: 476 KARKAAQAKIATMLTEFKT--QPAEQVVAKNKVAFESAGVFTR----SQGLKRAIERAAF 529
Query: 554 SGPVEM-----VKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDS 605
S P V + N L V NS P + + Q + +L+
Sbjct: 530 SVPAPKPGMWSVTIANLPNELVVVAVSNVNSAAVNAMPADQLQQLKQLYRQSRGQQILED 589
Query: 606 VIAYLKSQYSVT 617
YLKS +
Sbjct: 590 YSEYLKSHAKIK 601
>gi|88607320|ref|YP_505198.1| ppiC/parvulin rotamase family protein [Anaplasma phagocytophilum
HZ]
gi|88598383|gb|ABD43853.1| ppiC/parvulin rotamase family protein [Anaplasma phagocytophilum
HZ]
Length = 601
Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 102/610 (16%), Positives = 248/610 (40%), Gaps = 25/610 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
L + V +G + +P + ++ EL + + + ++ + G+ + +L
Sbjct: 2 GKLSNSGNGQCVAMLGNKCLPLRDYRIMYRNELAELEKMLQHKLSDAQINQFGIKEVVLK 61
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
N+++ +++F D+G+ + I +F + F + + + LA G+ E Y
Sbjct: 62 NMIADMVVEKFAHDLGIRVGSNSLRSLIKNIRIFQDANGVFDQERYEAVLADSGMTESSY 121
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF-------YFENRSVDYIVLNNRHVPA 204
++ L T ++ ++ A + I + +
Sbjct: 122 VNKIRNALPSTILMECLFPNRAELHIPYYDALAKDVVLGLLQHRVADIVEISSDAVDISG 181
Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
+ + + E+YK++ PEY+ YI+ + + +S+ E+ E + ++
Sbjct: 182 SDISDDELQKLFEEQYKNSLNFPEYRSADYIIMAEDDLLADVIVSDQEVDVEIKNSEL-- 239
Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
+ R V LVF ++ EA+ A+++ ++GK F +L + G ++ DI+L + SK+ +P
Sbjct: 240 --HDQRDVLNLVFTDKNEAELAYKAYQEGKSFEELVSDAGYTIEDIALNNISKDVLPVGV 297
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ +G+ + + G+ I V +++K+ I++ +R KA E +
Sbjct: 298 RN--VVFALNEGEVSEMFRSVVGWHIMKVIRKHEITKEDLEKLKEKISSNIRRQKAGELL 355
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDL-PLVDFAGKDVKGKEVAAIPYKEQ-LLFR 442
+ K+ + ++ G S++E+ + D G D G V P + F
Sbjct: 356 VSNVKKANDMISRGASLNELKDMFGARISGVLTNFDMHGLDKSGNLVKDFPLQLGINAFT 415
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ K + +Y V + E +P R R LEE + + ++WK+ +++
Sbjct: 416 TLAFSSAVGKPSHLVSNGDAYFGVLVTEVVPPRPRTLEESRSILTEEWKSALRMKKIREF 475
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD---NENKFFGYDGISQVFSGPVEM 559
A +L + + + G S + + D + + + + ++F+ +
Sbjct: 476 AVELRSKLQNGTE----LSVVNGVSFKKNVTVKKSDGSTDNDSKYPERLVDEIFAINIGG 531
Query: 560 VKCFPIENGL-SYVVFKVTNSKVGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
V I++ + + + K ++ + + ++ + + ++ YL +Y V
Sbjct: 532 VTKEVIDSESETVYIALLKEIKDAEISEEDLESYKAHFVSSGILSIREQLLGYLMKKYGV 591
Query: 617 TVHDNLIQRY 626
T+ ++L+++
Sbjct: 592 TIENSLLEKV 601
>gi|153872856|ref|ZP_02001627.1| peptidyl-prolyl cis-trans isomerase D [Beggiatoa sp. PS]
gi|152070679|gb|EDN68374.1| peptidyl-prolyl cis-trans isomerase D [Beggiatoa sp. PS]
Length = 576
Score = 165 bits (416), Expect = 2e-38, Method: Composition-based stats.
Identities = 84/578 (14%), Positives = 204/578 (35%), Gaps = 43/578 (7%)
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
+ ++L +++ L Q + GL + I F D KFS +
Sbjct: 1 MDTPEFRHRVLQDMIEEELLVQSAINNGLRISDAFLATRIQSFQAFQD-DGKFSPSQYEQ 59
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
L +G+ + + L + + ++ Q RF + RS+ Y+++
Sbjct: 60 VLRYQGMTPTAFEWEIRRSLLTDQIREGVLRSALVTDYDEQQRTRFDEQQRSISYLIIPK 119
Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
++A + ++++++ + Y+ E RI Y+ + +S + L+ Y++
Sbjct: 120 TRFDKAVTITDADIEKYYQEHLERYKTVEKVRIEYVELSKSDLANAEPLSEEMLKERYQE 179
Query: 260 NKEKYFSPEIRTVEQLV------------FPNQKEADEAFQSLKKGKKFIQLAEEQGKS- 306
K + +P ++ +++ + +K G+ +LA++
Sbjct: 180 RKASFTTPGRWNARHILIEVGKEASVSDKEEAKQKVQDILAKIKAGESVEKLAKQFSDDI 239
Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
LG F + + K GD + I FG+ I + +++P +
Sbjct: 240 GSKNQGGDLGWFDSGTMVKP--FEEALKSMKVGDISEPIKTRFGFHIIELVDVQPEKVLP 297
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDFAG 422
F++V++ + ++ +A +++ +++ + + D G
Sbjct: 298 FEQVREQLEADLKNEQADSAFYGQVEQMANLAFENPDNLETLRGTLNLERKTTDWFDKTG 357
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLS--KDHTVALPDGSYMWVQIKESIPARDRKLE 480
K + +I +++ F + + + + + +++KE PA+ R ++
Sbjct: 358 GSQKNEP-DSILSHPKVIEIAFSDEVLKERFNSEPIEIAEQQMVVLRLKEHQPAKARPID 416
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
+V D+K K +T E + L+ + ++G ++ K + T + R DNE
Sbjct: 417 DVKDDIKSALKQERTQAETEKLGSNLLDQIKQKGDP--NVVKEQALNWSTIQWVTRKDNE 474
Query: 541 NKFFGYDGISQVFSG----PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-------- 588
+ + Q F + N Y + V + K G V+
Sbjct: 475 PQRV---IVEQAFKMGQPAENNAIYQGITLNNGDYALIAVLDIKDGVVETAKADTEVEKT 531
Query: 589 ---KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ Q + + ++ LK + + +
Sbjct: 532 PDTEQQDKQQQAFGETEFNYFVSGLKVGAEIKDYSKKL 569
>gi|261380152|ref|ZP_05984725.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria subflava
NJ9703]
gi|284796990|gb|EFC52337.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria subflava
NJ9703]
Length = 617
Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats.
Identities = 100/633 (15%), Positives = 222/633 (35%), Gaps = 49/633 (7%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
A+I L ++ + F+ +G ++ S GS +V VG +KV + + + E Q G
Sbjct: 12 AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAGN 64
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
S + +L+ A L Q + +G+ ++ I P FH KFS
Sbjct: 65 NAPS--------RDAVFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D+ L + + E ++++ + +++ + G S+ Q R++
Sbjct: 117 QDLLKKYLDQRRMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ A +A L +++E +K +Y P+ ++ Y+ ++ + K +S +E+
Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQTVSAEEV 236
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-----------LKKGKKFIQLAEE 302
Q Y+ + + + + F +LA +
Sbjct: 237 QKAYDSKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKEHPDSFAELAAK 296
Query: 303 QGKS----LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
K +LG SK + F+L K G+ + + S GY + V N+
Sbjct: 297 YSKDLSSSNKGGNLGYLSKGGGSGFGPEFDKAAFALGK-GEVSDTVKSSLGYHVIKVLNV 355
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ T+ + + + A +++ AS K E+ +S+ + + + +L
Sbjct: 356 EAEPTLEQAKARIEAALKLK-KAASAFNAAKEKLGEDAFNDPSSLAKAAANSGLKVENLD 414
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
G + A +P +A+ + + ++ KE +
Sbjct: 415 E----WVTRAGAKEAGLPETLINAAFSDDVLKKKHNSEVIAINNETVWVIRAKEVREEKI 470
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
EV +V+ ++ + A+ KA + + K +Q++
Sbjct: 471 APFAEVKDNVRAAYQRSEAAKLAEKKAQETLAALKAG--------KAADVQWSPVSQLSA 522
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQEKD--KFISY 593
D + + + PV + + G+ V+ +V + +
Sbjct: 523 QDARKTMSPEAYAALLKARPVGGKPAYTLLEGMPAPVIMEVQSVSAPENADSQIPAAKQA 582
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L Q ++ ++ D+++ YL + T +
Sbjct: 583 LVQQLSANVFDALLQYLDKKIDRTQGAQQVNNA 615
>gi|121997400|ref|YP_001002187.1| hypothetical protein Hhal_0599 [Halorhodospira halophila SL1]
gi|121588805|gb|ABM61385.1| conserved hypothetical protein [Halorhodospira halophila SL1]
Length = 524
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 78/488 (15%), Positives = 167/488 (34%), Gaps = 30/488 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR + W+A + + + +PF+ G + + V V +++P S +
Sbjct: 1 MLQAIRDGIKGWIAWVIIGFIALPFIFMGGYEYFGGGQDDAVVARVDGEEIPRSQIDQAV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ + + G + L ++ L+ L+ L ++ GL V I
Sbjct: 61 ERQRAQLREMFGGDLPDGAFDGAALRREALEQLIDEQLLHAYVGKQGLRVTDQEVAQTIR 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+FH + +FS + + L R + ++Y + L + L+
Sbjct: 121 GQEIFH-EGGQFSRARYQTLLERNRLTPEDYEGLVRRDLKADQFQQAVFASSISTPSQLE 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R E+RS Y+ ++ +A + +E + D+Y APE R+ Y+
Sbjct: 180 RLVRLQDESRSFSYVEIDADRYTDEVSVDDAEVEAHYEAHTDDYMAPEAVRLEYVELGPL 239
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFS----------------PEIRTVEQLVFPNQKEAD 284
++++ ++ LQ Y++ E E + ++
Sbjct: 240 ALRDQVDVDDETLQERYDERYGDDDDPPTFDDVREELLADSIREQYRTELIEAGDELGNI 299
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
Q E S G + +V + + G + +I
Sbjct: 300 AFEQPDSLEPLVDTFGLEVRTSDWIDRDGGEGIGDLSEVVEEAFSEDVLEHGYNSDLIRV 359
Query: 345 S-FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
Y++ + + + +EV I Q+R +A++ +E + L L G S+DE
Sbjct: 360 DEDRYLVVRLLEHREAEPKPLEEVADTIREQLRQERAADLARERAEELVARLRDGDSLDE 419
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
++ ++ + + V E + V L DGS
Sbjct: 420 LAEELEVERFTVEDAYRDDRSHPEAVVREAFALE------------VDGYARVELDDGSA 467
Query: 464 MWVQIKES 471
+++
Sbjct: 468 ALLRLDGI 475
Score = 92.2 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/262 (11%), Positives = 89/262 (33%), Gaps = 16/262 (6%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
++++ + ++ E L S++ + + +D G +
Sbjct: 273 REELLADSIREQYRTELIEAGDELGNIAFEQPDSLEPLVDTFGLEVRTSDWIDRDGGEGI 332
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
G + + + + + Y+ V++ E A + LEEV +
Sbjct: 333 GDLSEVVEE-----AFSEDVLEHGYNSDLIRVDEDRYLVVRLLEHREAEPKPLEEVADTI 387
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
++ + + A+ +A +LV ++G + ++ + L T R D +
Sbjct: 388 REQLRQERAADLARERAEELVARL-RDGDSLDELAEELEVERFTVEDAYRDDRSH---PE 443
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ-----MMNKD 601
+ + F+ V+ +++G + + ++ G + Q M
Sbjct: 444 AVVREAFALEVDGYARVELDDGSA-ALLRLDGISRGDPEGLSAQERQQLQQQLQRMAGDS 502
Query: 602 LLDSVIAYLKSQYSVTVHDNLI 623
+ ++I L+++ + + +
Sbjct: 503 EVRALIRALRAEAEIEIARERL 524
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 11/142 (7%)
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
V ++ D + E+ ++L ++ + + G + T++ I+R E
Sbjct: 272 VREELLADSIREQYRTELIEAGDELGNIAFEQPDSLEPLVDTFGLEVRTSDWIDRDGGEG 331
Query: 542 KFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYL 594
+ + + FS + Y+V ++ + + D L
Sbjct: 332 IGDLSEVVEEAFSEDVLEHGYNSDLIRVDEDRYLVVRLLEHREAEPKPLEEVADTIREQL 391
Query: 595 TQMMNKDL----LDSVIAYLKS 612
Q DL + ++A L+
Sbjct: 392 RQERAADLARERAEELVARLRD 413
>gi|198283164|ref|YP_002219485.1| hypothetical protein Lferr_1036 [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|198247685|gb|ACH83278.1| hypothetical protein Lferr_1036 [Acidithiobacillus ferrooxidans
ATCC 53993]
Length = 522
Score = 164 bits (414), Expect = 4e-38, Method: Composition-based stats.
Identities = 82/532 (15%), Positives = 173/532 (32%), Gaps = 22/532 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINS 59
M+E R R+WVAK +V++ + F++WG+S LFS S SS V +V QK+ ++F
Sbjct: 1 MMETFRNFGRSWVAKSLMVLIALSFVLWGVSGYLFSGHSTSSVVATVDGQKISDAAFQKR 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
K L S G ++ A ++L+ L+ L +GL+ + +I
Sbjct: 61 MKDALARYSHIFGATTAAKMAADRSFGLEVLNGLIDNMLLGMEAGRLGLQVPDAALAKKI 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F + FS +++ LA G+ ++ D + + + + S +
Sbjct: 121 ESIPAFQ-EKGAFSKNLYQKLLAANGMTPAQFEDMLRESMRLEQLQVVPQVIATASKVEA 179
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ + E R V + + + A A P+ + ++ + D +R P ++ Y++
Sbjct: 180 TRIWAWSQEYRDVSTVDIRDSDFAAAARPTATQVADYYHAHMDQFRLPAQVQVQYVVLGP 239
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ K + + E + + S G +
Sbjct: 240 KDFVAKSGAPTSPAVSSPPVATPHPAVAVNSSAENAFQAQVENFKDRLFSSPDGLNAVAK 299
Query: 300 AEEQGKSLSDI-------SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
A S + + G FS D++ + ++ + T + + H
Sbjct: 300 AYGLTVQESGVLTAGQVLTKGPFSDAKALDLAFSKAVLAGKNSTALTL---ANGDLLAVH 356
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
+ + P V I ++ KA + ++ + L M+ ++
Sbjct: 357 LLHYTPGSVQPLSAVAGAITAKLSTEKAEQLAQKKAQALLTAARQAKDMNMLTDHGAYPL 416
Query: 413 IDLPLVD-FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
V + + A + V D + + ++
Sbjct: 417 HAYRDVTIRNALGLDKAVLEAAFTAPAPVGGVPSMDMVKTSS-----GYQIFAVTRVTA- 470
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEGKNFRDIG 521
PA +V ++ + + ++ L I
Sbjct: 471 -PAAAAINPKVTAQIRASLEEQRGRLLSTAYLKDLREHARVKINNAQLAQIA 521
Score = 85.7 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/433 (9%), Positives = 110/433 (25%), Gaps = 21/433 (4%)
Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
N +L + + + EK + +L A ++
Sbjct: 95 IDNMLLGMEAGRLGLQVPDAALAKKIESIPAFQEKGAFSKNLYQKLLAANGMTPAQFEDM 154
Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF------SKEYIP 321
++ + ++ + + E + S DI F + +
Sbjct: 155 LRESMRLEQLQVVPQVIATASKVEATRIWAWSQEYRDVSTVDIRDSDFAAAARPTATQVA 214
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
D A + +A S A + + +
Sbjct: 215 DYYHAHMDQFRLPAQVQVQYVVLGPKDFVAKSGAPTSPAVSSPPVATPHPAVAVNSSAEN 274
Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
+ + + ++ +++ + + ++ KG A
Sbjct: 275 AFQAQVENFKDRLFSSPDGLNAVAKAYGLTVQESGVLTAGQVLTKGPFSDAKALDLAFSK 334
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
V + L +G + V + P + L V + T K +
Sbjct: 335 AVLA----GKNSTALTLANGDLLAVHLLHYTPGSVQPLSAVAGAITAKLSTEKAEQLAQK 390
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
KA L+ + K+ + + L + + + F+ P +
Sbjct: 391 KAQALLTAARQA-KDMNMLTDHGAYPLHAYRDVTIRNAL--GLDKAVLEAAFTAPAPVGG 447
Query: 562 CFP---IENGLSYVVFKVTNSKVGPVQE-----KDKFISYLTQMMNKDLLDSVIAYLKSQ 613
++ Y +F VT + + L + + L + + L+
Sbjct: 448 VPSMDMVKTSSGYQIFAVTRVTAPAAAAINPKVTAQIRASLEEQRGRLLSTAYLKDLREH 507
Query: 614 YSVTVHDNLIQRY 626
V +++ + +
Sbjct: 508 ARVKINNAQLAQI 520
>gi|222056568|ref|YP_002538930.1| hypothetical protein Geob_3486 [Geobacter sp. FRC-32]
gi|221565857|gb|ACM21829.1| conserved hypothetical protein [Geobacter sp. FRC-32]
Length = 526
Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats.
Identities = 78/531 (14%), Positives = 180/531 (33%), Gaps = 35/531 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL--IWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
ML I+RK ++ + KI ++ + F+ I+ + +G V K+ ++
Sbjct: 1 MLGIMRKYKQSVLIKIVFCIIVLSFVGTIFLVWGRGDETTGGDFAAKVNGTKISMDDYLK 60
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
++ + + Q G + + + +G+ K +++L+ A + + + +G+ + + E
Sbjct: 61 NYDRMKSLYQQIYGQAMTPDLEKQLGIRKMAINSLIDNALIVKEAKRMGIAVNKDEIANE 120
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
IA+ P F KD F+ D + L + + + + + S+
Sbjct: 121 IAKVPAFQ-KDGVFNFDQYTQMLKAYRMTPANFEEGQEQEMLVKKAREKVKERATVSDQD 179
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
L QA + + +I + V ++ LT + + ++ ++ PE I+Y L
Sbjct: 180 LQQAFNKQNDKVDLSFISFSPSDVKNEVKVTDQDLTTYLQGHEKEFQTPEKVSIAYALVS 239
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
K ++++E + Y KN ++Y + +A + + +
Sbjct: 240 PSRFSSKATVTDEEAETYYRKNIDRYQGKGGILP--FAEVKDRAKADAIKQKGTREAYET 297
Query: 299 LAEEQGKSLSDISL------------------GSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+A+ K+L + + + D L K+G+
Sbjct: 298 VADTINKNLKGGDIKAAAASLGVKVDETPLFTAKTAPAPLADEGEVIKRAFLLKQGELGG 357
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
I + G I V KP+ E+K + ++ KA E K+ +
Sbjct: 358 PIETAKGIYIIKVMEKKPAAVPPLAEIKGQLTQKVTEEKARELAKKKAEEALAQ------ 411
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ ++ G + I L+ F
Sbjct: 412 -----LAKGTGTVKTQETGAFAYAANG-VIPRIGTSPDLMEAAFNLTAAAPTPKNTFKAG 465
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ V++K+ I ++ +++ K E + + +L +
Sbjct: 466 DRWYAVKLKQRIELNRADFQKNKEQIRQTLLPKKQQEALDNWMKELKAKAK 516
Score = 83.4 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 45/499 (9%), Positives = 123/499 (24%), Gaps = 19/499 (3%)
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
A+ + D+ + G +L R N +
Sbjct: 37 DETTGGDFAAKVNGTKISMDDYLKNYDRMKSLYQQIYGQAMTPDLEKQLGIRKMAINSLI 96
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
D ++ + + K + + Y + +
Sbjct: 97 DNALIVKEAKRMGIAVNKDEIANEIAKVPAFQKDGVFNFDQYTQMLKAYRMTPANFEEGQ 156
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD--- 309
Q K + +Q + + ++ + E + D
Sbjct: 157 EQEMLVKKAREKVKERATVSDQDLQQAFNKQNDKVDLSFISFSPSDVKNEVKVTDQDLTT 216
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
G + P+ + + + + +
Sbjct: 217 YLQGHEKEFQTPEKVSIAYALVSPSRFSSKATVTDEEAETYYRKNIDRYQGKGGILPFAE 276
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ +E Y+ + + + +I + + +
Sbjct: 277 VKDRAKADAIKQKGTREAYETVADTINKNLKGGDIKAAAASLGVKVDETPLFTAKTAPAP 336
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
+A + F + + + G Y+ ++ E PA L E+ + +
Sbjct: 337 LADEGEVIKRAFLLKQGELGG----PIETAKGIYII-KVMEKKPAAVPPLAEIKGQLTQK 391
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
K E KA + + + +K + + + I R+ D +
Sbjct: 392 VTEEKARELAKKKAEEALAQLAKGTGTVKTQ-ETGAFAYAANGVIPRIGT-----SPDLM 445
Query: 550 SQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLD 604
F+ + G + K+ + K + Q + ++ LD
Sbjct: 446 EAAFNLTAAAPTPKNTFKAGDRWYAVKLKQRIELNRADFQKNKEQIRQTLLPKKQQEALD 505
Query: 605 SVIAYLKSQYSVTVHDNLI 623
+ + LK++ + ++ +++
Sbjct: 506 NWMKELKAKAKIQINPSIL 524
>gi|148264907|ref|YP_001231613.1| hypothetical protein Gura_2867 [Geobacter uraniireducens Rf4]
gi|146398407|gb|ABQ27040.1| hypothetical protein Gura_2867 [Geobacter uraniireducens Rf4]
Length = 525
Score = 163 bits (410), Expect = 1e-37, Method: Composition-based stats.
Identities = 90/529 (17%), Positives = 193/529 (36%), Gaps = 32/529 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL--IWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
ML I+RK ++ + KI V+ F+ I+ + V K+ F +
Sbjct: 1 MLGIMRKYKQSVLIKIVFCVIVFSFIGTIFLVWGRGDKTDSGDFAAKVNGTKISFDEYQK 60
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
++ + G+ Q G + E + +G+ K L++L+ A + + + +G++ + + E
Sbjct: 61 NYYRMKGIYEQIYGRSMTPEMEKQLGIKKTALESLIDNALILKEAKRLGIDVNRDEISAE 120
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
IA+ P F KD F+ D + L I + + + + + S+
Sbjct: 121 IAKMPAFQ-KDGVFNFDQYTQMLKANRITPQNFEESMEEDMLVKKTREKIKERATVSDQD 179
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
L QA + + + +I + V ++ L + + +++ ++ PE I+Y + D
Sbjct: 180 LLQAFKKQNDKIDLSFIAFSPAEVKGEVKVTDQDLNSYLQGHQEEFKTPEQLSIAYAVLD 239
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ K+ +S++E Q Y+KN ++Y V K +S K+ + +
Sbjct: 240 PAQFAAKLTVSDEEAQTYYQKNIDRYQGKGGILPFAEVKEQAKADALKLKSTKEAYEKVA 299
Query: 299 LAEEQGKSLSDISLGSFSKE----------------YIPDVSLADSIFSLAKKGDFTPVI 342
A + +DI+ + S + + K+G+ +
Sbjct: 300 DAVNKNLKNADINAAAASLGVKVLETPLFTEKAPATALAGEADVIKKALFLKQGELGGPV 359
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
S G + V P+ ++K ++ ++ KA E K+ +
Sbjct: 360 ETSKGIYLIKVKEKIPAAVPPLAQIKTQVSQKVAEEKARELAKKKAEE------------ 407
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+++ K ++ L G G V I L+ F T S
Sbjct: 408 ALAQLTKGSAVKLQETGSFGYAPTG-VVPRIGTSADLMEAAFALTTAAPAAKTPFKVGNS 466
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ V++K+ A ++ +K+ K E + + +L +
Sbjct: 467 WYAVKLKQRTEANTADFQKSKEQLKQALLPKKQQETLDNWLKELKSKAK 515
Score = 82.6 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/498 (10%), Positives = 132/498 (26%), Gaps = 20/498 (4%)
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
A+ + + ++ + G + + +
Sbjct: 37 DKTDSGDFAAKVNGTKISFDEYQKNYYRMKGIYEQIYGRSMTPEMEKQLGIKKTALESLI 96
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
D ++ D + ++ K + + Y +
Sbjct: 97 DNALILKEAKRLGIDVNRDEISAEIAKMPAFQKDGVFNFDQYTQMLKANRITPQNFEESM 156
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE---QGKSLSD 309
+ K + +Q + K+ ++ ++ E + L+
Sbjct: 157 EEDMLVKKTREKIKERATVSDQDLLQAFKKQNDKIDLSFIAFSPAEVKGEVKVTDQDLNS 216
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
G + P+ + + + + +
Sbjct: 217 YLQGHQEEFKTPEQLSIAYAVLDPAQFAAKLTVSDEEAQTYYQKNIDRYQGKGGILPFAE 276
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ KE Y+++ + + +I+ + + + +
Sbjct: 277 VKEQAKADALKLKSTKEAYEKVADAVNKNLKNADINAAAASLGVKVLETPLFTEKAPATA 336
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
+A + + + V G Y+ ++KE IPA L ++ T V +
Sbjct: 337 LAGEADVIKKALFLKQGELGG----PVETSKGIYLI-KVKEKIPAAVPPLAQIKTQVSQK 391
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
K E KA + + + +K + + + T + R+ D +
Sbjct: 392 VAEEKARELAKKKAEEALAQLTKG--SAVKLQETGSFGYAPTGVVPRIGT-----SADLM 444
Query: 550 SQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLD 604
F+ P + G S+ K+ + K L Q + ++ LD
Sbjct: 445 EAAFALTTAAPAAKTPFKVGNSWYAVKLKQRTEANTADFQKSKEQLKQALLPKKQQETLD 504
Query: 605 SVIAYLKSQYSVTVHDNL 622
+ + LKS+ + ++ +
Sbjct: 505 NWLKELKSKAKIVINPAI 522
>gi|218461733|ref|ZP_03501824.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
[Rhizobium etli Kim 5]
Length = 432
Score = 162 bits (409), Expect = 1e-37, Method: Composition-based stats.
Identities = 143/435 (32%), Positives = 245/435 (56%), Gaps = 3/435 (0%)
Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
I + +YI +K+ R+ +V G L+D K + E+RSVDY++L N ++ I
Sbjct: 1 IRQDDYIQERSKVAVRSQIVDAVSNGFTAPKTLVDAMKLYGGESRSVDYLLLTNANIEPI 60
Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
P++ VL WFE K YRAPEY++I+Y+ + +++D+++ ++K K+ Y
Sbjct: 61 KAPADDVLASWFEGVKQRYRAPEYRKIAYLKLQPADIADAATVTDDQVREAFDKGKDSYR 120
Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
+PE RT+EQL F ++ A A +LK G F QL +QGK+ SD+ LG F+K+ +PD ++
Sbjct: 121 TPESRTIEQLTFTSKDLAAAAETALKSGTSFDQLVSDQGKTASDVLLGEFTKDKVPDQAV 180
Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
A++ F+++K G TPV+ GSFG VI ++NIK +F EVK++I Q+ ++ AS++V
Sbjct: 181 AEAAFAVSKDGGTTPVVDGSFGPVILRITNIKAETVKNFDEVKEEIRKQLALSNASQEVI 240
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ ++E+ A G ++++I+ + K+ ++ + VD G D GKEV IP K+QLL F
Sbjct: 241 NVHDQIEDLRAGGATLEDIASQLKLNAVTIDAVDATGADKDGKEVKDIPVKQQLLGEAFK 300
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ + + + + Y+W ++E P RDR + EV +DW + E++ KA++
Sbjct: 301 TEVGVDAP-PLPIGNDGYVWFNVREITPDRDRPIAEVREKAVEDWTAEQQKAELAKKADE 359
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
L + K G DI LG ++ + + I R ++ G G+ FSGP++ V
Sbjct: 360 LKAQAQK-GTALADIATPLGIAVESKSGITR-STDDPVLGRAGVKAAFSGPLDTVASAVG 417
Query: 566 ENGLSYVVFKVTNSK 580
+ + ++ KVT
Sbjct: 418 ADPSTQILMKVTEVN 432
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/295 (10%), Positives = 81/295 (27%), Gaps = 12/295 (4%)
Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
+ + K + + Y+ ++I + TV+ +V++ + E +
Sbjct: 69 ASWFEGVKQRYRAPEYRKIAYLKLQPADIADAATVTDDQVREAFDKGKDSYRTPESRTIE 128
Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
+ + + A + G+ + + F
Sbjct: 129 QLTFTSKDLAAAAETALKSGTSFDQLVSDQGKTASDVLLGEFTKDKVPDQAVAEAAFAVS 188
Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
V G + ++I + +EV +++K ++EV + +Q+
Sbjct: 189 KDGGTTPVVDGSFGP-VILRITNIKAETVKNFDEVKEEIRKQLALSNASQEVINVHDQI- 246
Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-------FGYDGISQVFSGPVEMV 560
+ G DI L + +T + ++ + + + F V +
Sbjct: 247 EDLRAGGATLEDIASQLKLNAVTIDAVDATGADKDGKEVKDIPVKQQLLGEAFKTEVGVD 306
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
YV F V + + + + + L +
Sbjct: 307 APPLPIGNDGYVWFNVREITPDRDRPIAEVREKAVEDWTAEQQKA---ELAKKAD 358
>gi|322434836|ref|YP_004217048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
MP5ACTX9]
gi|321162563|gb|ADW68268.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
MP5ACTX9]
Length = 662
Score = 162 bits (408), Expect = 2e-37, Method: Composition-based stats.
Identities = 90/640 (14%), Positives = 187/640 (29%), Gaps = 59/640 (9%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-----------GRQKVPFSSFINSWK 61
+ L + + + G+ D + S +V + V + +
Sbjct: 19 FITVALGAMVITLV-PGIFDNVDSGGSGVNYATVHAPGLFGRFGGDSEPVLQTEVTRAAT 77
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
Q+L + ++ ++ LV A L + +GL+ + E+ +
Sbjct: 78 QQLEQ------QKLPP--MLMPYIESRVAQQLVQEAILKLEADRLGLQVADSDLLRELHQ 129
Query: 122 SP----LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
LF + + ++ K + + + GG+ S+
Sbjct: 130 GQIGQILFPNGQYIGDDAYMNFVQNQLNMTRGDFEILVKKEMEVARLQALITGGVTVSDN 189
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA---PEYKRISY 234
+ + R DY V+ + + A +PS++ L +F+ + Y K +
Sbjct: 190 AVRDSYRVSGTKVKFDYAVITSDTLRATVNPSDSDLQTFFKTNQARYATAVPESRKLNYF 249
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------- 286
K ++++ +LQ Y + +Y + V ++ AD
Sbjct: 250 AFGADQIPGGKPQVTDADLQTYYNAHLAQYQVKDQAKVRHILIAVPAGADARTDAAAKAK 309
Query: 287 ----FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+ +K G F LA + + LG S D K G
Sbjct: 310 ADDLLKQIKAGGNFADLASKNSDDPGSKANGGELGFLSPGQTVPE--FDKASFSLKPGQT 367
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ VI FGY I V + + T EVK +I + K K L +
Sbjct: 368 SDVIKTKFGYHILQVEERQNAHTKPLNEVKAEITPIVEQQKFGNAEAAYAKSLSDEARKN 427
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+D+ + + + V G L +V+
Sbjct: 428 G-IDKTAAAHGLHATTTDFVGKDGVVPGV-------SDSTALLAQAFTTTKKGDPISVST 479
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
DG + Q+ + + + + D++ K + ++ K N+L +KE +
Sbjct: 480 GDG-FAIFQVVDIQAPHAPTFDAYKSHILDDYRAEKVPQLLNEKLNKL-DARAKELNDLH 537
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVT 577
L + +++ + + G F V V+
Sbjct: 538 KAAAELNIPVKSSDLVGKDGQVPDLGAMSGPGAPAFDLAKGTVSNPINTGSNGIVLVVTD 597
Query: 578 NSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQY 614
+ F L +++ + L +Y
Sbjct: 598 KQEPSADDIAKNFTATREGLLNERREEVFRLYLGTLTEKY 637
>gi|213582060|ref|ZP_03363886.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
Length = 405
Score = 160 bits (404), Expect = 6e-37, Method: Composition-based stats.
Identities = 85/412 (20%), Positives = 184/412 (44%), Gaps = 14/412 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ + R V V++ + A ++ ++ ++++ K + PE R+SYI
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVRFMTPEQFRVSYIKL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D + +S+ ++QA Y+++ +++ PE + + +A +L KG+ F
Sbjct: 239 DAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFA 296
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E+ + +G + L ++ L +KG + VI S G+++A +
Sbjct: 297 TLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG--LKEKGQISGVIKSSVGFLVARL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
+I+P+ EV+ DIA +++ KA + +++ + + +
Sbjct: 354 DDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAASNDNESLAGA 405
>gi|197118887|ref|YP_002139314.1| hypothetical protein Gbem_2510 [Geobacter bemidjiensis Bem]
gi|197088247|gb|ACH39518.1| conserved hypothetical protein [Geobacter bemidjiensis Bem]
Length = 526
Score = 160 bits (403), Expect = 7e-37, Method: Composition-based stats.
Identities = 73/519 (14%), Positives = 175/519 (33%), Gaps = 10/519 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
ML I+RK ++ + KI VV+ + F+ +WG + + V K+
Sbjct: 1 MLGIMRKYKQSILIKIVFVVIVLSFIGTIFLVWGRGGDKSANGPAGYAAMVDGTKISMDD 60
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
F ++ + + Q G + E + +GL K + +++ + + +G++ D V
Sbjct: 61 FQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKATISSMIDNVLTLKEAKKMGIKVDKDEV 120
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EIA+ P F + F ++ + L + KE+ + + L +
Sbjct: 121 AAEIAKIPSFQN-NGAFDFTLYQNTLKANRVTPKEFEETQEQDLLVQKARNKVKEKATVT 179
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ L Q + + ++ Y+ + V ++A L + + ++ ++ PE I+Y
Sbjct: 180 DADLMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQVSIAYT 239
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
L K+ ++ +E Q Y+KN ++Y V + ++ K+ +
Sbjct: 240 LVSPAALAAKVSVTPEEAQNYYQKNIDRYQGKGGILPFAEVKDQATADAQKAKAAKEAYE 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
++ ++ ++ + + + + A G+ V
Sbjct: 300 KAAETAKKFRAQGNLDAAAQALGGKVEKTPLFTAQAPAAAIAGETELVARAFALKQNELG 359
Query: 354 SNIKPSFTVSFQEVKK-DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
++ + + +V + + + +V+ ++ +E ++
Sbjct: 360 GPVETAKGIYLLKVLDKKPSVVPPLAQVRAQVERKLLEVKGAEVAKKKAEEALQQLSKAG 419
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
G G E + V + + Y V++K +
Sbjct: 420 AATKETGNFGYSPAGAIPTVGTSPELMEAAFALTPANPVAKQPVKVGERWY-AVKLKNRV 478
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
A + +K+ K EE+ L +
Sbjct: 479 EAPTTDFAKASATIKQTLLPKKQQEELDKWLKGLRDKAK 517
Score = 79.9 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 52/483 (10%), Positives = 122/483 (25%), Gaps = 27/483 (5%)
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
D ++ G + + + +D ++
Sbjct: 58 MDDFQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKATISSMIDNVLTLKEAKKMGIKVDK 117
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ K + Y + E + Q + +
Sbjct: 118 DEVAAEIAKIPSFQNNGAFDFTLYQNTLKANRVTPKEFEETQEQDLLVQKARNKVKEKAT 177
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQ------LAEEQGKSLSDISLGSFSKEYIPDVS 324
+ + K+ ++ L + + F ++
Sbjct: 178 VTDADLMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQVSIA 237
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ Y + F EVK + KA+++
Sbjct: 238 YTLVSPAALAAKVSVTPEEAQNYYQKNIDRYQGKGGILPFAEVKDQATADAQKAKAAKEA 297
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
E + ++D ++ PL + + L +
Sbjct: 298 YEKAAETAKKFRAQGNLDAAAQALGGKVEKTPLFTAQAPAAAIAGETELVARAFALKQ-- 355
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
V G Y+ ++ + P+ L +V V++ VK AE KA
Sbjct: 356 -----NELGGPVETAKGIYLL-KVLDKKPSVVPPLAQVRAQVERKLLEVKGAEVAKKKAE 409
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCF 563
+ + + SK G + I + + F+ P V
Sbjct: 410 EALQQLSKAG---AATKETGNFGYSPAGAI-----PTVGTSPELMEAAFALTPANPVAKQ 461
Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVH 619
P++ G + K+ N P + K + + Q + ++ LD + L+ + + ++
Sbjct: 462 PVKVGERWYAVKLKNRVEAPTTDFAKASATIKQTLLPKKQQEELDKWLKGLRDKAKIDIN 521
Query: 620 DNL 622
++
Sbjct: 522 PSI 524
>gi|253700332|ref|YP_003021521.1| hypothetical protein GM21_1709 [Geobacter sp. M21]
gi|251775182|gb|ACT17763.1| conserved hypothetical protein [Geobacter sp. M21]
Length = 526
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/519 (13%), Positives = 175/519 (33%), Gaps = 10/519 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
ML I+RK ++ + KI VV+ + F+ +WG + +V K+
Sbjct: 1 MLGIMRKYKQSILIKIVFVVIVLSFVGTIFLVWGRGGEGSADGPGGYAATVDGTKISMDD 60
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
F ++ + + Q G + E + +GL K + ++V + + +G++ + V
Sbjct: 61 FQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKTTIGSMVDNVLTLKEAKKMGIKVNKDEV 120
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EIA+ P F + F +++ L + KE+ + + + +
Sbjct: 121 AAEIAKIPSFQN-NGAFDFNLYQQTLKANRVTPKEFEETQEQDILVQKARNKVKEKATVT 179
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + Q + + ++ Y+ + V ++A L + + ++ ++ PE I+Y
Sbjct: 180 DADVMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQVSIAYT 239
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
L K+ ++ +E Q Y+KN ++Y V + ++ K+ +
Sbjct: 240 LVSPAALAAKVSVTPEEAQNYYQKNIDRYQGKGGILPFSEVKDQATADAQKAKAAKEAYE 299
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+ +S ++ + + + + A G+ V
Sbjct: 300 KAAETANKFRSQGNLDAAAQALGGKVEKTPLFTAQAPAAAIAGEIELVTRAFALKQGELG 359
Query: 354 SNIKPSFTVSFQEVKK-DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
++ + + +V + + + +V++ ++ +E ++
Sbjct: 360 GPVETAKGIYLLQVLDKKPSVVPPLAQVRAQVEQKLLEVKGAEVAKKKAEEALQQLAKGG 419
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
G G E + V + + Y V++K +
Sbjct: 420 AAAKETGNFGYSPAGAIPTVGTSPELMEAAFALTPASPVAKQPVKVGERWY-AVKLKNRV 478
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
A + +K+ K +E+ L +
Sbjct: 479 EAPTTDFAKASATIKQALLPKKQQDELDKWLKGLRDKAK 517
Score = 84.5 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 55/483 (11%), Positives = 121/483 (25%), Gaps = 27/483 (5%)
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
D ++ G + + VD ++ +
Sbjct: 58 MDDFQKNYYRTRNLYEQIYGRSLTPEMEKQMGLKKTTIGSMVDNVLTLKEAKKMGIKVNK 117
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ K + Y + E + Q + +
Sbjct: 118 DEVAAEIAKIPSFQNNGAFDFNLYQQTLKANRVTPKEFEETQEQDILVQKARNKVKEKAT 177
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQ------LAEEQGKSLSDISLGSFSKEYIPDVS 324
+ V K+ ++ L + + F ++
Sbjct: 178 VTDADVMQEFKKQNDKVNLQYVSFSPADVKGSIKLTDAELNVYLQDHQAQFKTPEQVSIA 237
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ Y + F EVK + KA+++
Sbjct: 238 YTLVSPAALAAKVSVTPEEAQNYYQKNIDRYQGKGGILPFSEVKDQATADAQKAKAAKEA 297
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
E ++D ++ PL + + L +
Sbjct: 298 YEKAAETANKFRSQGNLDAAAQALGGKVEKTPLFTAQAPAAAIAGEIELVTRAFALKQ-- 355
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
V G Y+ Q+ + P+ L +V V++ VK AE KA
Sbjct: 356 -----GELGGPVETAKGIYLL-QVLDKKPSVVPPLAQVRAQVEQKLLEVKGAEVAKKKAE 409
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCF 563
+ + + +K G + I + + F+ P V
Sbjct: 410 EALQQLAKGG---AAAKETGNFGYSPAGAI-----PTVGTSPELMEAAFALTPASPVAKQ 461
Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVH 619
P++ G + K+ N P + K + + Q + +D LD + L+ + + ++
Sbjct: 462 PVKVGERWYAVKLKNRVEAPTTDFAKASATIKQALLPKKQQDELDKWLKGLRDKAKIEIN 521
Query: 620 DNL 622
++
Sbjct: 522 PSI 524
>gi|189426095|ref|YP_001953272.1| hypothetical protein Glov_3046 [Geobacter lovleyi SZ]
gi|189422354|gb|ACD96752.1| conserved hypothetical protein [Geobacter lovleyi SZ]
Length = 531
Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats.
Identities = 77/534 (14%), Positives = 172/534 (32%), Gaps = 14/534 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
ML++IRK + V K V++ + F+ +WG D S V R + +
Sbjct: 1 MLDVIRKKKESVVIKAVFVIIVLSFIGTIFLVWGKGDEGMGRSAG-YAAKVDRTTISLEA 59
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ N+++ Q G E + + L ++ +D L+ + + + G+ +
Sbjct: 60 YQNAYQNMAETYRQIFGANFTPELEKQLNLRQQAIDRLIDSTLIIKAAKSQGVSVSKEEI 119
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
IA F ++ F ++ L I + + + L + + S
Sbjct: 120 SAAIAGMSAFQ-QNGSFDFGLYQQMLKANRITPDAFEESKKRELLIEKTRKAVMDKVVIS 178
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + + + Y + V A +A L + K + +++PE +S+
Sbjct: 179 DDEALKQFHKEQDKLELSYASFSAADVSAEVKLGDADLQDYLTKNAEKFKSPEKIALSWF 238
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKY--FSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + + ++ +E ++ Y KN ++Y EQ+ + +A +
Sbjct: 239 VLENSGQSHVQAVTAEEQESFYRKNMDRYVDKDNAPLPYEQVKERVKADAQRQKAAKALY 298
Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+K + KS LG+ +++ + A + G +
Sbjct: 299 EKAADTLFQNIKSGDLGLVAAKLGAKTQDTPLFSANAAPAALAGETALLKKAFELKQGEL 358
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
V K + +E K + + + + + + E +
Sbjct: 359 GGPVETAKGIYIFKVKEKKAAELPPLAQVRTTVEQQLRALKAAELAKQKAVEAQKQLAGN 418
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ L G + KG I + L+ +VF + L + V++K
Sbjct: 419 GAGLKLQATPAFGYNSKGDL-PGIGNSKPLMEKVFELTTAGATPSEPMLVGNRWYAVRLK 477
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ A +VK+ K E + + +L +
Sbjct: 478 QRNAAPQADFAPRKDEVKRQLLPAKQEEALRAWLKELRSKAKIVYNPALTAANQ 531
Score = 79.1 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 52/477 (10%), Positives = 119/477 (24%), Gaps = 12/477 (2%)
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ + + G L R +R +D ++ S
Sbjct: 57 LEAYQNAYQNMAETYRQIFGANFTPELEKQLNLRQQAIDRLIDSTLIIKAAKSQGVSVSK 116
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
++ + + Y + + + + K ++
Sbjct: 117 EEISAAIAGMSAFQQNGSFDFGLYQQMLKANRITPDAFEESKKRELLIEKTRKAVMDKVV 176
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
+ + + + ++ E +D+ ++
Sbjct: 177 ISDDEALKQFHKEQDKLELSYASFSAADVSAEVKLGDADLQDYLTKNAEKFKSPEKIALS 236
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+ + V KA + ++ K
Sbjct: 237 WFVLENSGQSHVQAVTAEEQESFYRKNMDRYVDKDNAPLPYEQVKERVKADAQRQKAAKA 296
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
L E A + S +V+ L A E L + +
Sbjct: 297 LYEKAADTLFQNIKSGDLGLVAAKLGAKTQDTPLFSANAAPAALAGETALLKKAFELKQG 356
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
V G Y+ ++KE A L +V T V++ + +K AE KA + +
Sbjct: 357 ELGGPVETAKGIYI-FKVKEKKAAELPPLAQVRTTVEQQLRALKAAELAKQKAVEAQKQL 415
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP-VEMVKCFPIENGL 569
+ G + ++ D + +VF P+ G
Sbjct: 416 AGNGAGLKLQATPA------FGYNSKGDLPGIGNSKPLMEKVFELTTAGATPSEPMLVGN 469
Query: 570 SYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+ ++ P + KD+ L ++ L + + L+S+ + + L
Sbjct: 470 RWYAVRLKQRNAAPQADFAPRKDEVKRQLLPAKQEEALRAWLKELRSKAKIVYNPAL 526
>gi|258545268|ref|ZP_05705502.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
gi|258519481|gb|EEV88340.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
Length = 610
Score = 159 bits (400), Expect = 2e-36, Method: Composition-based stats.
Identities = 95/631 (15%), Positives = 214/631 (33%), Gaps = 51/631 (8%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ + + +++ + L G+ F+ G + + +V Q+VP ++
Sbjct: 25 MLEDIREKKTNRITYLLVIIAGIGMLFIGVP--YFNHGGETNIATVNGQEVPL----RAY 78
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+++ I Q+ L ++ + +LV Q + ++ I
Sbjct: 79 QEQYRDIQQQQP------DLSETDLKQRAVRSLVERTLFQQQALNSRYRLPDSALYRIIK 132
Query: 121 RSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+F + + + L GI+ + Y S +N L
Sbjct: 133 E---------QFGNDENYQQWLKSRGISAETYQQSVRSDQSIASYYSALQAAGGENNPLY 183
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ + R + + A + +++ L + +E + + Y PE I+Y ++D+
Sbjct: 184 QHYLQSAAQERGYTLYTIPRAPIAAAINVNDSALQKHYEAHGERYATPETVDINYTIYDI 243
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ E +A E+ +Y + K+ + F + + L
Sbjct: 244 ADLPVSDEQIAK-ARAASERRGGRYLIIDDAKAASDAAAAIKDGRKTFADYWQDIQNKTL 302
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
A E L +K L +++F+LAK GD +P+I +G ++ + NI+
Sbjct: 303 AGE------SGELALAAKGKGTSPELDEALFALAKPGDVSPLIDSEYGKILVELGNIETG 356
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
++R ASE + + + ++ I +
Sbjct: 357 N---------RSDEELRRLAASENETAYTEHANQAFDAAQNGKGLAAITGITGGQTQSLS 407
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
D P + LF D V + ++ + + + R
Sbjct: 408 AITADSDAAPWLHEPKIQAQLFGAQALPDNKV-GEPVEIGPQRTLFFTVSKREKPQPRPF 466
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
+V V+ D++ + + + + L ++ + + A T NR
Sbjct: 467 ADVRAQVETDYRNEQANTTLHERGDALKQALAESPEKAAALASEYQAKSETVAPANRYTT 526
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQMM 598
+N + ++F+ + +G +V ++ + + G + + LTQ
Sbjct: 527 QN-----PLVLELFNQSA-RISSLDTPDGD-LLVARLDSVRDGDPAQLPEPVRQTLTQAW 579
Query: 599 NKD----LLDSVIAYLKSQYSVTVHDNLIQR 625
+ S+ +L Q ++V++ +QR
Sbjct: 580 QMQAISGVYKSMGDWLYRQAKISVNEEALQR 610
>gi|256823166|ref|YP_003147129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
DSM 16069]
gi|256796705|gb|ACV27361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kangiella koreensis
DSM 16069]
Length = 624
Score = 159 bits (400), Expect = 2e-36, Method: Composition-based stats.
Identities = 92/620 (14%), Positives = 206/620 (33%), Gaps = 41/620 (6%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
G V V ++ + + + +E A L +
Sbjct: 15 AGYFTGTLFSGNPDKVAEVEGAEITNAQIQQRVDNVRRQMGDQFEQQYATE-ASQQLLRQ 73
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
+I + L+S L + GL A ++ P F +S D LA++G +
Sbjct: 74 QIKEQLISEQVLRANLTKAGLTASEQQIKAWAREFPAFQ-IGGVYSADQAKMILAQQGWS 132
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
E+ + + +++ + N ++ + + R V Y+ + D
Sbjct: 133 EERFRQFARQQIAQEQLEQGVGASNFALNFEVEAYYQLQEQTRDVGYVRVAREAFSDSVD 192
Query: 208 PSNAVLTQWFEKYKDNYRAPEYK--RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
S++ + +++E+ + + PE R + ++ ++SN+++ + YE+NK Y
Sbjct: 193 VSDSEVKEYYEQNQTQFEQPEMVNLRYVRLSLTELSQDLMADVSNEQITSFYEQNKANYQ 252
Query: 266 SPEIRTVEQL-----VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF----- 315
P V + V Q +A +++G F +LA+E G
Sbjct: 253 DPAEILVAHILIDSSVEDAQSKAQSLLSDIEQGADFAELAKEHSSDTFSGENGGQLDWVD 312
Query: 316 --------SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
+ +L GD T ++ FGY I + + K + + V
Sbjct: 313 AVPTSDDNPTGTGWVPEFEAAALALENVGDVTDLVESQFGYHIIKLVDKKAADVSPLENV 372
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKIVSIDLPLVDFAGKDVK 426
+ +I Q+ + +A + E L E L +++ + + ++ + L
Sbjct: 373 QDEIRQQLALEQAQKIFFEKQAILNEKLFEYGDDLEKFAEQVELEIQETGLFSKDSATGI 432
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
+ + + L +++ +K+ P++ + LEEV V
Sbjct: 433 ADNPVFLEK-----AFSASILESTEVSDMIELSQDDIVYLTVKDYQPSQVQPLEEVKQIV 487
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
K K AE + A Q++ E + G + + S + + + +F
Sbjct: 488 VDTLKEEKIAEATKAYAEQVLAEL-EAGGSAEQLLATKELSWTESEALKARGSSVQF--- 543
Query: 547 DGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVG-----PVQEKDKFISYLTQM 597
D + +F+ Y V +V + + + L +
Sbjct: 544 DLSNAIFALQPPKEGEVIRAVEPLFNGDYAVIEVQAVQYPDPSTMDEATRKQIAQRLANV 603
Query: 598 MNKDLLDSVIAYLKSQYSVT 617
+ L ++ + + ++
Sbjct: 604 NAQAELQGLMKTFREKSEIS 623
>gi|225075250|ref|ZP_03718449.1| hypothetical protein NEIFLAOT_00253 [Neisseria flavescens
NRL30031/H210]
gi|224953425|gb|EEG34634.1| hypothetical protein NEIFLAOT_00253 [Neisseria flavescens
NRL30031/H210]
Length = 617
Score = 158 bits (398), Expect = 3e-36, Method: Composition-based stats.
Identities = 100/633 (15%), Positives = 217/633 (34%), Gaps = 49/633 (7%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
A+I L ++ + F+ +G ++ S GS +V VG +KV + + + E Q G
Sbjct: 12 AQIVLGIIGLTFIGFGANN--LSSPGSDYIVKVGDEKVSEHALQIAIQNE-----QAAGN 64
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
S I +L+ A L Q + +G+ ++ I P FH KFS
Sbjct: 65 NAPS--------RDAIFQSLLQRAYLKQGAKLMGIAVSQEQIKQVIVDDPNFHDASGKFS 116
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D+ L + + E ++++ + +++ + G S+ Q R++
Sbjct: 117 QDLLKKYLDQRKMTEDQFVEDIREQFQLQNLLNLVQNGALVSDAQARQLINLTQATRTIR 176
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ A +A L +++E +K +Y P+ ++ Y+ ++ + K +S +E+
Sbjct: 177 SFTFSPEAFAAQVKVDDAALQKYYEAHKKDYLIPQAVKLEYVALNIKDLADKQNVSAEEV 236
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS-----------LKKGKKFIQLAEE 302
Q Y+ + + + F +LA +
Sbjct: 237 QKAYDSKSVDLSPRAEIAHIFIPVMPNGDEASNAEIKAEVDKMAAELKAHPDAFAELAAK 296
Query: 303 QGKS----LSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
K +LG SK + F+L K G+ + + S GY + V N+
Sbjct: 297 YSKDLSSSNKGGNLGYLSKSGGSGFGPEFDKAAFALGK-GEVSDTVKSSLGYHVIKVLNV 355
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ T+ + + + A +++ AS K E+ +S+ + + + +L
Sbjct: 356 EAEPTLEQAKARIEAALKLK-KAASAFNAAKEKLGEDTFNDPSSLAKAAANSGLKVENLD 414
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+ A +P +A+ + + ++ KE +
Sbjct: 415 E----WVTKADAKEAGLPETLINAAFSDDVLKKKHNSEVIAINNETVWVIRAKEVREEKI 470
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
EV V+ + + A+ KA + + K +Q++
Sbjct: 471 APFAEVKDTVRAAYLRSEAAKLAEKKAQETLAALKAG--------KAADVQWSPVSQLSA 522
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQEKD--KFISY 593
D + + + V + + G+ V+ +V + +
Sbjct: 523 QDARKTMSPEAYAALLKARSVGGKPAYVLLEGMPAPVIMEVQSVSAPENADSQIPAAKQA 582
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L Q ++ ++ DS++ YL + T +
Sbjct: 583 LVQQLSANVFDSLLQYLGRKIDRTQGAQQVNNA 615
>gi|257455225|ref|ZP_05620460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter
aerosaccus SK60]
gi|257447187|gb|EEV22195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter
aerosaccus SK60]
Length = 622
Score = 158 bits (398), Expect = 3e-36, Method: Composition-based stats.
Identities = 93/634 (14%), Positives = 206/634 (32%), Gaps = 30/634 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+E +R + W+ K LV+ +P I G + S + V V V ++
Sbjct: 1 MESLRNFLKGWMGKALLVLFLLPLAITGFESIVRSGDDPNAVAKVAELNVDNATLQTMIN 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ +++ ++ S L +++L NL+ + +G + +
Sbjct: 61 NRRETLLEQVNG--DASLLNSDKLREQMLHNLIDRYLIINQANQLGFTVSDATITQMLMA 118
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
F KFS+++F S L G+ +++ D + L T + + +D+
Sbjct: 119 EKTFQDASGKFSNELFASYLTSRGMTKEQLFDSVRQDLLVTAFSRGIINTGIFAQGSIDK 178
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
E+R V + L+ + + +++K + ++ + ++Y+ + +
Sbjct: 179 LMSMQSESRPVQVLRLDWHSFAPQVQVTPQEIASYYQKNQATLKSSDMVDLTYLELNKNA 238
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA- 300
+ + Q K E L+ +Q +A K A
Sbjct: 239 LPVAAPTAQELQQQYQSYLKNSNNQTEYELAMILMNGSQAQATLTSLKSKLDANQADFAA 298
Query: 301 ------EEQGKSLSDISLGSFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+++G ++G ++ P D + K G T I ++GY + +
Sbjct: 299 LAKQYSQDEGSKNDGGNIGPITQSMFPNDYDTIMTQIKTLKVGQVTSPIKTNYGYHLFKL 358
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
I + + + + Q+ K ++ ++ G ++ E++ R K+ +
Sbjct: 359 VKINGQTPPTIESLAPVLTEQIMAQKREAAYQDLIGKINNDAVAGATITELANRYKLTAK 418
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ + A + + L +W+Q P
Sbjct: 419 SIKNYPKTNNSSALSQPAIVAAAFEPLA------LQEGSVSVGIDVSDKVVWLQSTNHRP 472
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
++ E +K K ++AN + + + G
Sbjct: 473 SKLMTQAEAEPVIKAKLIEEKAKSLALAEANAIAAKVKQANS-----IAAAGVPFQDLGI 527
Query: 534 INRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVV--FKVTNSKVGPVQEK 587
+ R D++ FS P V P +G S +V ++ Q K
Sbjct: 528 VTRQDSKLSDDERAV---AFSQPAVNNQLAVMTRPTMSGASVIVGGVITNDNAQITPQVK 584
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ + + + + + +AYLKS VTV
Sbjct: 585 QQTAQIVRENIGQSQFEDYLAYLKSITKVTVKPQ 618
>gi|153004233|ref|YP_001378558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
gi|152027806|gb|ABS25574.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
Length = 523
Score = 158 bits (398), Expect = 3e-36, Method: Composition-based stats.
Identities = 75/528 (14%), Positives = 169/528 (32%), Gaps = 37/528 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDA----LFSVSGSSTVVSVGRQKVPFSS 55
MLE +R + IFL + + F+I +G + +G+S V + +P
Sbjct: 1 MLEGLRANKGGIITWIFLGAIILVFVISFGPGSLNQGGGCAGAGASYAAKVNGKTIPAVE 60
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ + Q + ++G E A +GL ++ L LV + Q ++ G+ +
Sbjct: 61 WERQYSQLYDLYQSQMGGGFTRELAAQLGLAEQALSQLVDRELVIQEAKERGIVVSDEEL 120
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
I P FH F + + + + + ++ Y + L ++ ++ S
Sbjct: 121 SSAIHAIPAFHRSGA-FHFETYEAAARQNFGSPAKFESWYREQLLYGKMLAAVGETVKVS 179
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ +A + + S+ ++ A PS+A + + EK
Sbjct: 180 GAEVKEAWQADADKLSLSFVRFPLAAFQAEVKPSDAEVKAFAEKDGARIEQFHKD----- 234
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ + Q + ++ A Q K
Sbjct: 235 -----------NAARFDQQKKVRVRHVLARVTPGADDAAARKKIEEAAARVKQGEAFEKV 283
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
L++++G LG ++ + D A + ++G + + + G+ +
Sbjct: 284 VAALSDDEGTKARGGDLGFVTEG-LFDEQFAKAAL-ALEQGQVSAPVRSASGWHLVKAEE 341
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL------------EEFLALGTSMDE 403
+ P+ VS + + DIA ++ + K+ + + ++F +
Sbjct: 342 VVPAKKVSLADARLDIARELLQQDRARKLAAERAQAAHAAARSGKPLAQQFPDAEAAKKA 401
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ K+ + + V + +L+ LP G
Sbjct: 402 KATPVKVGGQTIAAEETGTFTASSPFVPKLGPAAELVGAARAAKAGEVLPKVYDLPAGPV 461
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ V + ++ E V + + K A+ VS L +
Sbjct: 462 VAV-VTARETPDEKAFEGARDQVAERLRNEKEAQVVSRWLEGLRKDAE 508
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/227 (11%), Positives = 60/227 (26%), Gaps = 22/227 (9%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D K G F + + V+ +E +PA+
Sbjct: 290 DEGTKARGGDLGFVTEGLFDEQFAKAALALEQGQVSAPVRSASGWHLVKAEEVVPAKKVS 349
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG------------- 525
L + D+ ++ A +++++ Q ++ GK +
Sbjct: 350 LADARLDIARELLQQDRARKLAAERAQAAHAAARSGKPLAQQFPDAEAAKKAKATPVKVG 409
Query: 526 ---ASLLTTNQINRMDNENKFFGY--DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
+ T G + + + V + VV VT +
Sbjct: 410 GQTIAAEETGTFTASSPFVPKLGPAAELVGAARAAKAGEVLPKVYDLPAGPVVAVVTARE 469
Query: 581 VGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ +D+ L ++ + L+ + + +L+
Sbjct: 470 TPDEKAFEGARDQVAERLRNEKEAQVVSRWLEGLRKDAEIERNLSLL 516
>gi|58698918|ref|ZP_00373781.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Drosophila ananassae]
gi|58534569|gb|EAL58705.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Drosophila ananassae]
Length = 578
Score = 158 bits (397), Expect = 3e-36, Method: Composition-based stats.
Identities = 102/575 (17%), Positives = 221/575 (38%), Gaps = 26/575 (4%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + K+ +V+L + G+ + L V VG++ + + + ++ I
Sbjct: 2 NVKNFFTKVTVVLLACLLIFVGVGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQI 61
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
S G + E+ + L +L+ L+ L ++GL + I + F
Sbjct: 62 S---GSDASREQVKK--LKYDLLNALIEQKLLFNLTSELGLTVGEESIKNHIKNTKYFQN 116
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKR 184
+F + F L + EKEYI K+L + P + +Q
Sbjct: 117 DKGEFDKNKFHETLNDLHMTEKEYIAKLEKILPAMMFMTSLFKDNYPVTFGEKIDEQIYN 176
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
++ R VD + + V I +P + L +E+ K ++ PEY+ YI + E
Sbjct: 177 SRYQTRVVDIVKITEDAVTNIPEPDDQTLLDLYERNKSHFYYPEYRTAQYISLEQKYFED 236
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
+I+IS++E+ E+ + + + ++ + F Q+ EE G
Sbjct: 237 QIKISDEEVDGIIEQQELRDQRDIFN---IIFSTKEEAETARRAFEEGKTSFEQIVEEFG 293
Query: 305 KSL-SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
K+ + + + +K+++P K G+ + V+ SFG+ I V +
Sbjct: 294 KAELEETRVNNITKDFLP--EDMREKVFALKVGEVSEVLASSFGWHIIKVESAHQISDED 351
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
++KKDI + + K+ E+V + ++ + G++++EI + + VD +GK
Sbjct: 352 LVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSAIEEILSEYNLPIQTIGPVDASGK 411
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
D G V +F + + V+I + +P + + EE
Sbjct: 412 DQSGNNVGDSSDLISFIFSREKDQKG-----YFKGVGDAVVSVKIIDIVPPKSQSFEEGR 466
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
+ W++ E + + ++ ++ D K G L+ Q++R + +
Sbjct: 467 ASAVELWQSEFIKERMFKIGQEFAVQLREK----TDWEKIQGVELVEDQQMHRNE---QN 519
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+ + + ++F+ PI+ ++ +
Sbjct: 520 YPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKE 554
>gi|21672727|ref|NP_660794.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008943|sp|Q8K987|PPID_BUCAP RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
D; AltName: Full=Rotamase D
gi|21623371|gb|AAM68005.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 621
Score = 158 bits (397), Expect = 4e-36, Method: Composition-based stats.
Identities = 101/635 (15%), Positives = 240/635 (37%), Gaps = 31/635 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ ++ + K L ++ + + +++ F+ + + V +++ F + +
Sbjct: 1 MIKYLKSRLNIIIVKCILGIIILSLVFGTINNY-FNRDTTRYIAKVNGEEISFITLQKMY 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + +G + + IL L++ L+Q+ + + +
Sbjct: 60 IDERKKQEKILGQDFEKIKKNKKFKEETYNYILSQLINNILLEQYTKRMNFNIQDNEIKK 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P+F ++N+F+ +++ L+ + + EY+ K L+ T ++ +
Sbjct: 120 IIFNIPIFQ-ENNEFNKKKYLNYLSSKNLTHYEYVSLIRKKLNTTYLINAISETDFILDN 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + E R + ++ + + + +F+++K+ + PE +ISYI
Sbjct: 179 EQKKIIKLLSEKRIIKKAIIKINPIINNQKVTEKEINNYFDQHKNEFYTPEKFKISYIQL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ + + SN+E++ Y+KN +KY + E R + + EA LKKG+ F
Sbjct: 239 KPNKFKIQC--SNEEIKNWYKKNIDKYSNQERRQYSIIQTKTKNEALSILSELKKGEDFS 296
Query: 298 QLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
++A+E+ ++G +K ++P+ I +L K + +I + ++I +
Sbjct: 297 KIAKEKSIDPFSSEQGGNIGWITKNFVPNE---IKIANLEKIDQISNIIKFNNNFLIIKL 353
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRREKIVS 412
+ I P EV I N+++ K+ K+ ++ D I ++ I+
Sbjct: 354 NKILPKKYKKISEVSDLIENEIKYQKSLNTYKKLKDKIAIIAKKNINRFDLILKKTNILP 413
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ D K + + + + S + L D + IK
Sbjct: 414 KETNWFDKDS-VPKELQNPILKKIIFKKGLLDRQKKLKSHSGLIVLNDHQSFLLSIKNFQ 472
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
R +KL+++ ++ K +K E+ +K +++ + I K
Sbjct: 473 KKRIKKLKDIKRNIVNKLKYIKAVEKTKNKLKKILFQLKIGN---EHILKKENIIFEEYE 529
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVGP--VQE 586
++R D IS +F+ P V ++V+ + +E
Sbjct: 530 TVSRYDKNPN------ISVIFAMPHPKEEKNVYTMYQNKNKNFVIALLDKVYNEKFSNEE 583
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ I YL + + L + ++ +
Sbjct: 584 EKIIIKYLEKNNIDVTFQCFLQNLHRKATILYNKT 618
>gi|329119300|ref|ZP_08247987.1| peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464647|gb|EGF10945.1| peptidyl-prolyl cis-trans isomerase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 603
Score = 156 bits (392), Expect = 1e-35, Method: Composition-based stats.
Identities = 97/624 (15%), Positives = 223/624 (35%), Gaps = 49/624 (7%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
AKI L ++ + F+ +G + + S +V VG +K+ + + Q +G
Sbjct: 12 AKIMLGLIALTFVGFGAGGIIATG--SDYIVKVGGEKISTQNVQEA------QREQNLGS 63
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ L L A L + + +G+ ++ I P FH ++ +FS
Sbjct: 64 G------------QDALAYLTERAYLAEGAKMMGIGVSEAQLKQVIVDDPGFHDENGRFS 111
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
F L + G+ E+ ++++ + ++V + GG S+ +Q +R +
Sbjct: 112 EAKFRLFLQQGGLTEERFLENLRNSFALQNLVNLAGGGNIVSSAQAEQYAALMLADREIR 171
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
I L+ + A +A L +++K K YR P+ + YI + ++ DEL
Sbjct: 172 SIALDPKTFAAQIKADDAALKAYYDKDKSKYRLPQAVKYQYIELSPRTLAESQKVGEDEL 231
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------FQSLKKGKKFIQLAEEQGKS- 306
+ +E+ ++ L +A ++ +KF +LA + +
Sbjct: 232 KKAFEEQQKNAAPTREVAHIMLKTEGDAAKTKAEAEKILAEAKAAPEKFAELAAKYSQDA 291
Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
+ SLG+ K+ + ++ +L + ++ G + I V N++ +S
Sbjct: 292 GTAQTGGSLGAVGKDSPLPEAFKTAVSALGQGDI--ALVEGEGAFHIVRVGNVRSG--LS 347
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
F+E K + ++ KA E V + L + + + +++ D+ +
Sbjct: 348 FEEAKPALEAALKEKKAREAVAKTRDTLRQIAFEKPESLQPAAEATGLTVR-DSADWLSR 406
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
+ + E L + + + ++ ++ E+
Sbjct: 407 ENAQQSGLPAEAVEALF---GDDVFKKKHNSDLITAGDTSWVLRATDTRAESVPAFEKAK 463
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
V+ + + A+ ++ +L+ E K G + + D +
Sbjct: 464 EQVRAAYLNSEAAKAAEAQGKKLLAELQKGGTP--------QLEWSSVETLTAADARLRL 515
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVG--PVQEKDKFISYLTQMMNK 600
+ + P + + + GL V+ +V + KV ++ + L +
Sbjct: 516 PPQALSALAKARPAQGKPAYVLLEGLPAPVLVEVRSIKVPQTSAEDGKLIRTRLAEHTAI 575
Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + + AYLK + +
Sbjct: 576 GMYNGLTAYLKGKIPAEQGKQKLD 599
>gi|220916557|ref|YP_002491861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219954411|gb|ACL64795.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 523
Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats.
Identities = 65/522 (12%), Positives = 155/522 (29%), Gaps = 28/522 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDAL----FSVSGSSTVVSVGRQKVPFSS 55
ML+I+R + + + ++ + V F I +G + V + + +
Sbjct: 1 MLDIVRANKKGIFSWLIVLGIVVVFAINFGPGSLSKGGAGCGGAPAYAARVNGKSISAAD 60
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
F ++ L Q+ G E A +GL ++ L L Q G+ V
Sbjct: 61 FERQYENLLRFYQQQAGEGFTRELAAQLGLGRQALGVLEDRELALQEARRRGVVVTDREV 120
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
+ + P F ++ +F ++ ++ + + + L ++G V ++
Sbjct: 121 SEAVHQMPAFQ-ENGQFRYETYLEAVRANYGSPGNFEAAVRDDLLYQKILGALVETVKVP 179
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + S+ ++ A +A + +K A +
Sbjct: 180 ATEVRAQWAASADRASLQFVRFPVAAAQAEVKVPDAEAKAFADKEGARVEAFYKENADRY 239
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ + + E+ + + A + K
Sbjct: 240 DQRAKAHVRHVLARVAPGASADEEAAAR-------------KKIDEAAARVKKGEDFAKV 286
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
L+++ LG S+ + K G+ + + G+ +
Sbjct: 287 AAALSDDPNTKDRGGDLGFVSEGL--ADAAFAKAALALKAGEVSEPVRTPAGWHLIRADE 344
Query: 356 IKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ P+ V+ + + DIA + + +A +E + + G ++DE+ +
Sbjct: 345 VVPARKVTLEAARLDIARELLARDRAQALAREKAQAALDAARKGKALDELFPPAGKGKVT 404
Query: 415 LPLVDFAGKDVKG-----KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
L A ++ V + +L P G + V
Sbjct: 405 LGGTALAAEETGPFGAGSPVVPRVGAAPELAQAALSAKAGEVLPKVFDTPSGPVIAVVKL 464
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
P R E ++ + +K + + +L +
Sbjct: 465 RESPDPARFEAE-RAGIEARLQGMKAEQVRRAWLEELRGKAK 505
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/253 (15%), Positives = 83/253 (32%), Gaps = 21/253 (8%)
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
K+++E A ++ ++ +S D D G + + +
Sbjct: 266 ARKKIDEAAARVKKGEDFAKVAAALSDDPNTKDRGG----DLGFVSEGLADAAFAKAALA 321
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
V P G ++ + E +PAR LE D+ ++ A+ ++ + Q
Sbjct: 322 LKAGEVSEPVRTPAGWHLI-RADEVVPARKVTLEAARLDIARELLARDRAQALAREKAQA 380
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG------------YDGISQVFS 554
L+ +++GK ++ G +T E FG + S
Sbjct: 381 ALDAARKGKALDELFPPAGKGKVTLGGTALAAEETGPFGAGSPVVPRVGAAPELAQAALS 440
Query: 555 GPVEMV--KCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYLTQMMNKDLLDSVIAYL 610
V K F +G V K+ S E+ + L M + + + + L
Sbjct: 441 AKAGEVLPKVFDTPSGPVIAVVKLRESPDPARFEAERAGIEARLQGMKAEQVRRAWLEEL 500
Query: 611 KSQYSVTVHDNLI 623
+ + + + L+
Sbjct: 501 RGKAKIEENVALL 513
>gi|39997188|ref|NP_953139.1| hypothetical protein GSU2090 [Geobacter sulfurreducens PCA]
gi|39984078|gb|AAR35466.1| hypothetical protein GSU2090 [Geobacter sulfurreducens PCA]
gi|298506201|gb|ADI84924.1| conserved hypothetical protein [Geobacter sulfurreducens KN400]
Length = 527
Score = 155 bits (390), Expect = 2e-35, Method: Composition-based stats.
Identities = 95/532 (17%), Positives = 197/532 (37%), Gaps = 36/532 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
ML I+RK ++ V K+ V+ + F+ +WG + + S V V R K+ +
Sbjct: 1 MLGIMRKYKQSPVIKVVFGVIVLSFIGTIFLVWGKGEGKLTPSS--YAVKVDRTKISYEE 58
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
F ++ + + Q G + + + + + K+ LD LV GA + D+G++ V
Sbjct: 59 FQRTYYRLRDIYVQLYGPALTPDLEKQLNVKKQALDTLVEGALVRNAARDMGIKVSKDDV 118
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
IA P F + FS + +V L I KE+ + L S
Sbjct: 119 QQAIAAMPSFQV-NGAFSFNQYVQVLKANRIAPKEFEEGQKDELMIKKAQDQIKSRATVS 177
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + R + ++ Y+ + V A ++ LT + K +++++ PE I+Y+
Sbjct: 178 DDEARELFRKRNDRLAISYVSYSPDDVKAEIKLTDQELTDFLAKNQNDFKTPEKISITYV 237
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ D + +E+S ++QA Y+KN ++Y P V +E F++ + +
Sbjct: 238 MVDPLKVGG-LEVSEADIQAWYQKNIDRYQGPAGILPLAEVKEKVREDARRFKAGQHAYE 296
Query: 296 FIQLAEEQGKSLSDI-----SLGSFSKEYIPDVSLADSI-----------FSLAKKGDFT 339
A + K+ DI +LG+ ++E + + + K+G+
Sbjct: 297 LAAAAINKNKATGDIGAVARALGAKTEETALFTAQQPAPALAGETELIRRAFILKEGELG 356
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
+ G + + KP+ +++ + + + KA + K+ + + LA G
Sbjct: 357 GPVETKKGIYLIKIKERKPAEVPPLAQIRAQVEEKAKTAKAVDLAKKKAEEAQAKLAKGD 416
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ D F K + + +L+ F
Sbjct: 417 -------STGLTLRDSGPFAFDAK----GNIPTVGASPELMEAAFKLTTAAPAPKEPIRV 465
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
++ ++KE +K++ K +E +L +
Sbjct: 466 GARWIAFRLKERTELNAANFAAQKEKIKQEILPRKQDDEYRKWIEELRSKAK 517
Score = 84.5 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 56/482 (11%), Positives = 120/482 (24%), Gaps = 23/482 (4%)
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
Y + D+ G +L + + V+ ++ N S
Sbjct: 56 YEEFQRTYYRLRDIYVQLYGPALTPDLEKQLNVKKQALDTLVEGALVRNAARDMGIKVSK 115
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ Q + Y+ + E + K +
Sbjct: 116 DDVQQAIAAMPSFQVNGAFSFNQYVQVLKANRIAPKEFEEGQKDELMIKKAQDQIKSRAT 175
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQL-AEEQGKSLSDISLGSFSKEYIPDVSLADSI 329
+ ++ ++ + AE + + ++
Sbjct: 176 VSDDEARELFRKRNDRLAISYVSYSPDDVKAEIKLTDQELTDFLAKNQNDFKTPEKISIT 235
Query: 330 FSLAKKGDFT--PVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKDIANQMRITKASEKVK 385
+ + V + P+ + EVK+ + R KA +
Sbjct: 236 YVMVDPLKVGGLEVSEADIQAWYQKNIDRYQGPAGILPLAEVKEKVREDARRFKAGQHAY 295
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
E + ++R + + L ++ A E L R
Sbjct: 296 ELAAAAINKNKATGDIGAVARALGAKTEETALFTA-------QQPAPALAGETELIRRAF 348
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
V G Y+ +IKE PA L ++ V++ KT K + KA +
Sbjct: 349 ILKEGELGGPVETKKGIYLI-KIKERKPAEVPPLAQIRAQVEEKAKTAKAVDLAKKKAEE 407
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM-VKCFP 564
+ +K + + + I + + F P
Sbjct: 408 AQAKLAKGDSTGLTLRDSGPFAFDAKGNI-----PTVGASPELMEAAFKLTTAAPAPKEP 462
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ----MMNKDLLDSVIAYLKSQYSVTVHD 620
I G ++ F++ + Q D I L+S+ + ++
Sbjct: 463 IRVGARWIAFRLKERTELNAANFAAQKEKIKQEILPRKQDDEYRKWIEELRSKAKIEINP 522
Query: 621 NL 622
L
Sbjct: 523 AL 524
>gi|332970309|gb|EGK09301.1| peptidyl-prolyl cis-trans isomerase [Kingella kingae ATCC 23330]
Length = 610
Score = 155 bits (390), Expect = 3e-35, Method: Composition-based stats.
Identities = 92/621 (14%), Positives = 221/621 (35%), Gaps = 48/621 (7%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
A++ L + + F+ +GL++ S + +V VG Q + + + + S++ G
Sbjct: 12 AQLLLGAIGISFIGFGLANFDISTD-KNYIVRVGDQYITRDALEIAIRN-----SEQSGG 65
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
V + ++ L++ A L + + +G+ ++ + +P FH + KF
Sbjct: 66 VAD---------RNQVFQILLNRAYLQEGAKRLGIVVSDAQIKQAVVDTPEFHDANGKFD 116
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
F + L + ++E++++ + L+ T ++ G S+ Q F R++
Sbjct: 117 PAKFQAFLQQTHLSEEQFMAQERERLTLTVLLNTLNQG-TVSDEQAMQFVNARFAERTIR 175
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
V N + +A L ++++ K Y + + YI+ + K +S+ E+
Sbjct: 176 TSVFNPENYAKDVKIDDASLQKFYDANKQTYALQQGVKYDYIVLSPKDLLDKQTVSDAEV 235
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFIQLAEE 302
QA + + + P + ++ +KF LA++
Sbjct: 236 QAALKDAQANAKPTRKIAHILIEAPKSADEATRSKAKAQAEQVAKEAQAAPEKFADLAKQ 295
Query: 303 QGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+ S LG+F+K+ + +G+ + V+ FGY I V++I+
Sbjct: 296 YSQDAGSAQSGGELGNFAKDGSLPAPALEEAAFKLGEGEVSGVVETDFGYHIVRVTDIQA 355
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ E + + + +A K+++ + E A + + + +
Sbjct: 356 IDVAALTERVRRELQEKKAQQAYNKMRD--ELSEAVFASNNDLAAAASKFGLTVQKQG-- 411
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
++ + + + + + + DG+ +V+ E+ A
Sbjct: 412 EWLTRANAAELKVPTAVVD---AALSDEIFSKKQTSDAISADGATWFVRPTETRAAGTEP 468
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
L V V+ DW ++ A + V K + + ++ M
Sbjct: 469 LANVRERVQADWVRSESVRLAREAAQKAVEALRKGETPT--------LAWMPEQKVVPMQ 520
Query: 539 NENKFFGYDGISQVFSGPVEMVKC-FPIENGLSYVVFKVTNS-KVGPVQEKDKFISYLTQ 596
+ D + + P +E G + +V + + + + + + Q
Sbjct: 521 VQALILPQDYAQFIAAQPKNGKPAFAVVERGGMVELVEVKSIATLNDPKILNAIKAEIAQ 580
Query: 597 MMNKDLLDSVIAYLKSQYSVT 617
+ L ++ I L++Q
Sbjct: 581 VRGSALAEAYIDGLRAQVPTE 601
>gi|14582889|gb|AAK69701.1|AF356511_1 putative peptidyl-prolyl cis-trans isomerase D [Anaplasma
phagocytophilum]
Length = 575
Score = 155 bits (389), Expect = 3e-35, Method: Composition-based stats.
Identities = 97/584 (16%), Positives = 226/584 (38%), Gaps = 27/584 (4%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDA-----LFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
SR + + + L + V +G + +P + ++
Sbjct: 2 RSRKIYVWVVMATVLGAMAFVTFGSMIPMGKLSNSGNGQCVAMLGNKCLPLRDYRIMYRN 61
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
EL + + + ++ + G+ + +L N+++ +++F D+G+ + I
Sbjct: 62 ELAELEKMLQHKLSDAQINQFGIKEVVLKNMIADMVVEKFAHDLGIRVGSNSLRSLIKNI 121
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
+F + F + + + LA G+ E Y++ L T ++ ++ A
Sbjct: 122 RIFQDANGVFDQERYEAVLADSGMTESSYVNKIRNALPSTILMECLFPNRAELHIPYYDA 181
Query: 183 KRF-------YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ I + + + + + E+YK++ PEY+ YI
Sbjct: 182 LAKDVVLGLLQHRVADIVEISSDAVDISGSDISDDELQKLFEEQYKNSLNFPEYRSADYI 241
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ + + +S+ E+ E + ++ + R V LVF ++ EA+ A+++ ++GK
Sbjct: 242 IMAEDDLLADVIVSDQEVDVEIKNSEL----HDQRDVLNLVFTDKNEAELAYKAYQEGKS 297
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F +L + G ++ DI+L + SK+ +P + +G+ + + G+ I V
Sbjct: 298 FEELVSDAGYTIEDIALNNISKDVLPVGVRN--VVFALNEGEVSEMFRSVVGWHIMKVIR 355
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+++K+ I++ +R KA E + + K+ + ++ G ++E+ +
Sbjct: 356 KHEITKEDLEKLKEKISSNIRRQKAGELLVSNVKKANDMISRGALLNELKDMFGARISGV 415
Query: 416 -PLVDFAGKDVKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D G D G V P + F + K + +Y V + E +P
Sbjct: 416 LTNFDMHGLDKSGNLVKDFPLQLGINAFTTLAFSSAVGKPSHLVSNGDAYFGVLVTEVVP 475
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
R R LEE + + ++WK+ +++ A +L + + + G S
Sbjct: 476 PRPRTLEESRSILTEEWKSALRMKKIREFAVELRSKLQNGTE----LSVVNGVSFKKNVT 531
Query: 534 INRMD---NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+ + D + + + + ++F+ + V I++ V
Sbjct: 532 VKKSDGSTDNDSKYPERLVDEIFAINIGGVTKEVIDSESETVYI 575
>gi|255067897|ref|ZP_05319752.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria sicca ATCC
29256]
gi|255047885|gb|EET43349.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria sicca ATCC
29256]
Length = 616
Score = 154 bits (387), Expect = 5e-35, Method: Composition-based stats.
Identities = 103/621 (16%), Positives = 220/621 (35%), Gaps = 48/621 (7%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
A+I L ++ + F+ +G+S GS +V +G +K+ S N + E Q G
Sbjct: 12 AQILLGLIALTFVGFGVSTVAV--PGSDFIVKIGDEKISEYSLNNELQGE-----QLQGQ 64
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ + +LV A L + + +G+E ++ I P FH ++ KFS
Sbjct: 65 SPS---------RGAVFQSLVQRAYLKEGAKLMGVEVSQEQLKQLIVDDPNFHDQNGKFS 115
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+F + L++ + E +++ + + ++ + G S+ +Q + R +
Sbjct: 116 QQIFSNFLSQRHMTEDQFVADIRERYALQSLINLVQNGAIISDAQAEQLIKLTQATRDIR 175
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ N + +A L ++E +K +Y P+ ++ YI + K +S DE+
Sbjct: 176 SVTFNPEAFVSQVKVDDAALKAYYEAHKKDYLIPQGVKLEYIALSAKDLADKQAVSEDEV 235
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFIQLAEE 302
+ +++ P + + K F LA++
Sbjct: 236 KKAFDEQAPHLSPRREIAHIFFPVPQDADETVRAAIKAEADKVAAELKAKPADFADLAKK 295
Query: 303 QGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
K +LG SK+ L + FSL K G + V+ GY I V NI
Sbjct: 296 YSKDTASASKGGNLGYLSKDGGLGTDLENVAFSLPKGG-ISDVVQTPVGYDIVQVLNI-- 352
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
VS + K I +++ KA+ + ++L E ++ K ++ L +
Sbjct: 353 EDKVSLEHEKARIEADLKLKKAASEFNSVKEKLSEEAFNTP--TSLADVAKKTNLKLESL 410
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D + A +P +++ + +++KE +
Sbjct: 411 DQDWLTQANGKAAGLPDALINAAFSEDVLKKKHNSDLISMDKDTVWVIRVKEVREEKTAP 470
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
+V +V+ + + A+ KA + + K + ++++ D
Sbjct: 471 FADVQEEVRLAYLRSEAAKLADKKAKEAIEALKAG--------KAVDLKWSEVSKLSAQD 522
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFP--IENGLSYVVFKVTNSKVGP--VQEKDKFISYL 594
+ + P + +E + V+ +V N + L
Sbjct: 523 ARRTMAPEAYNELIKARPQNGKPAYAMLLEGMPAPVIVEVQNIAAPENIASQVPAAKQML 582
Query: 595 TQMMNKDLLDSVIAYLKSQYS 615
Q + ++ D+++ Y +
Sbjct: 583 AQQQSANIFDALLRYFSKEIK 603
>gi|197121763|ref|YP_002133714.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
K]
gi|196171612|gb|ACG72585.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
K]
Length = 524
Score = 153 bits (386), Expect = 7e-35, Method: Composition-based stats.
Identities = 65/523 (12%), Positives = 152/523 (29%), Gaps = 29/523 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDAL----FSVSGSSTVVSVGRQKVPFSS 55
ML+I+R + + + ++ + V F I +G + V + + +
Sbjct: 1 MLDIVRANKKGIFSWLIVLGIVVVFAINFGPGSLSKGGAGCGGAPAYAARVNGKSISAAD 60
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
F ++ L Q+ G E A +GL ++ L L Q G+ V
Sbjct: 61 FERQYENLLRFYQQQAGEGFTRELAAQLGLGRQALGVLEDRELALQEARRRGVVVTDREV 120
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
+ + P F ++ +F ++ ++ + + + L ++G V ++
Sbjct: 121 SEAVHQMPAFQ-ENGQFRYETYLEAVRANYGSPGNFEAAVRDDLLYQKILGALVETVKVP 179
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + S+ ++ A +A + +K A +
Sbjct: 180 ATEVRAQWAASADRASLQFVRFPVAAAQAEVKVPDADAKAFADKEGARVEAFYKENADRY 239
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ + + E+ + + A + K
Sbjct: 240 DPKAKVHVRHVLARLAPGASADEEAAAR-------------KKIDEAAARVKKGEDFAKV 286
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
L+++ LG S+ + K G+ + + G+ +
Sbjct: 287 AAALSDDPNTKDRGGDLGFVSEGL--ADAAFAKAALALKAGEVSEPVRTPAGWHLIRADE 344
Query: 356 IKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ P+ V+ + + DIA + + +A +E + + G ++DE+
Sbjct: 345 VVPARKVTLEAARLDIARELLARDRAQALAREKAQAALDAARKGKALDELFPPAGKGKQV 404
Query: 415 LPLVDFAGKDVKGKEVAAIP------YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ G A P +L P G + V
Sbjct: 405 TLGGTAVAAEETGPFGAGSPVVPRVGAAPELAQAALSAKAGEVLPKVFDTPSGPVIAVVK 464
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
P R E ++ + +K + + +L +
Sbjct: 465 LRESPDPARFEAE-RAGIEARLQGMKAEQVRRAWLEELRGKAK 506
Score = 68.7 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 38/254 (14%), Positives = 81/254 (31%), Gaps = 22/254 (8%)
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
K+++E A ++ ++ +S D D G + + +
Sbjct: 266 ARKKIDEAAARVKKGEDFAKVAAALSDDPNTKDRGG----DLGFVSEGLADAAFAKAALA 321
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
V P G ++ + E +PAR LE D+ ++ A+ ++ + Q
Sbjct: 322 LKAGEVSEPVRTPAGWHLI-RADEVVPARKVTLEAARLDIARELLARDRAQALAREKAQA 380
Query: 507 VLEYSKEGKNFRDIGKNLG-----------ASLLTTNQINRMDNENKFFG--YDGISQVF 553
L+ +++GK ++ G + T G +
Sbjct: 381 ALDAARKGKALDELFPPAGKGKQVTLGGTAVAAEETGPFGAGSPVVPRVGAAPELAQAAL 440
Query: 554 SGPVEMV--KCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYLTQMMNKDLLDSVIAY 609
S V K F +G V K+ S E+ + L M + + + +
Sbjct: 441 SAKAGEVLPKVFDTPSGPVIAVVKLRESPDPARFEAERAGIEARLQGMKAEQVRRAWLEE 500
Query: 610 LKSQYSVTVHDNLI 623
L+ + + + L+
Sbjct: 501 LRGKAKIEENVALL 514
>gi|269102133|ref|ZP_06154830.1| peptidyl-prolyl cis-trans isomerase PpiD [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268162031|gb|EEZ40527.1| peptidyl-prolyl cis-trans isomerase PpiD [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 565
Score = 153 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 98/565 (17%), Positives = 212/565 (37%), Gaps = 23/565 (4%)
Query: 67 ISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ ++G ++ + +L+ +++ + + ++GL ++ I P
Sbjct: 1 MQAQLGENFSNLLGNPQYVQQFRRSVLERMINDVLIQKRAHELGLRVSDQQIRDAIFAMP 60
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
F D KF+++ + L R GI +++ + L R +G G + +++ +
Sbjct: 61 EFKV-DGKFNNEQYNQLLRRSGITPEQFAESLRTDLLRQQFLGAIEGSDFALSGEVNELR 119
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+ R + + LN A+ S + ++ + ++ ++ +
Sbjct: 120 MLESQERVIRTLTLNLADFTKKAEASITEEQEKAFYEQNPQQFTRPAQVKVSYVEITGDK 179
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP-----NQKEADEAFQSLKKGKKFIQ 298
K I + QA Y ++K+K+ +PE R V ++ ++++A+ LK G F +
Sbjct: 180 LKDSIEVSDAQAYYNEHKDKFSTPEKRQVSHILITGDSAASKEKAEAILAQLKDGANFAE 239
Query: 299 LA----EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA +++ + L F K + D + D+ F+LAK GD + V+ SFGY I +
Sbjct: 240 LAKKDSDDKFSAKDGGKLEWFEKGVM-DPAFEDAAFALAKPGDLSGVVKSSFGYHIILLD 298
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
I+P+ F +VK +I ++ KA ++ +L E + + V
Sbjct: 299 GIEPAKAKPFADVKAEIIADIKSQKAGDEFYAMQTKLAETAFESPDSLDEAAE--AVKAK 356
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ DF + + P Q L ++D ++ D + + + V++ ++
Sbjct: 357 VHATDFFSEQTAPGVLNN-PKVLQALQSPEVREDGMNSD-AIEVGPEHVVVVRVDDARDE 414
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++V VK ++ KA++LV + + G S I
Sbjct: 415 TVLPFKDVEAKVKSLLAQRDGEQQAQKKADELVAQLRDGKS---EQLTKEGYSFSGEQTI 471
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV--FKVTNSKVGPVQEKDKFIS 592
R + + G +V KV + V +F
Sbjct: 472 TRSGPDYQVSQVAFRLAKPQAGKATYGVTRDAKGNVLIVQLDKVIDQDVAKEAADPQFAQ 531
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVT 617
+ QM + + + I L+ ++
Sbjct: 532 QVEQMNAQQDMATTIQTLRETADIS 556
>gi|190570945|ref|YP_001975303.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
gi|190357217|emb|CAQ54634.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Culex quinquefasciatus Pel]
Length = 599
Score = 153 bits (384), Expect = 1e-34, Method: Composition-based stats.
Identities = 121/606 (19%), Positives = 243/606 (40%), Gaps = 33/606 (5%)
Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86
G+ + L + + VG++ + + ++ IS G V+ E+ + L
Sbjct: 21 FMGIGNLLSNDDERKELAKVGKEVITSDEYKLLYQNYKKQIS---GSDVSKEQVKK--LK 75
Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
+L+ L+ L I ++GL+ + I + F +F H+ F L I
Sbjct: 76 YDLLNALIEQKLLFNLISELGLKVGEESIKSHIKNTKYFQDDKGEFDHNKFHQTLNSLHI 135
Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKRFYFENRSVDYIVLNNRHVP 203
EKEYI+ K+L + P + +Q + ++ R VD + + +
Sbjct: 136 TEKEYIEKLEKILPAMMFMTSLFKDNYPVTFGEGVDEQIYKNRYQTRVVDIVKITEDAIT 195
Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
+ +P + L +E+ K N+ PEY+ YI D E +I IS++E+ + E + K
Sbjct: 196 DVPEPDDQALLDLYERNKSNFYYPEYRTAQYISLDQKYFEDQIRISDEEVDSIIEHQELK 255
Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK-SLSDISLGSFSKEYIPD 322
+ +K + F Q+ EE K L + + + +K+++P+
Sbjct: 256 NQRDIFN---VIFPTKEKAEIARRALEESKASFEQIIEEFNKVKLDETRVNNITKDFLPE 312
Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
K G+ + V+ +FG+ + V +I ++KKDI + + K+ E
Sbjct: 313 N--MREKVFALKTGEVSEVLTSNFGWHVIKVESIHQISDEDLVDLKKDIRSVLTNQKSFE 370
Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
KV + ++ + G +++EIS + + VD +GKD G EV +F
Sbjct: 371 KVNDFINQVNYKIYNGATIEEISNNYNLPIQTIGPVDASGKDQSGNEVGNSSDFISFIFS 430
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + V+I + +P + + EE K W++ E +
Sbjct: 431 -----REKDQKSYFKGVGDTVVGVKISDIVPPKLQNFEESRESAIKLWRSEFIKERMFKM 485
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
++ ++ ++ D+ + G L+ QI R + + + + I ++F+
Sbjct: 486 GQEVAVQLREK----TDLEEMQGIKLVKGQQIQRNE---QNYPFSFIEEIFNMKTTNSVT 538
Query: 563 FPIENGLSYVVFKVT--NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
PI+ ++ + +S G + D + L + +I+YLKS+Y V V+
Sbjct: 539 DPIQYNNEIIIGVLKQMHSSNGKLNMLDTGKRVMIS-----LKEQLISYLKSKYRVEVNH 593
Query: 621 NLIQRY 626
+I
Sbjct: 594 AMIDDI 599
>gi|85858466|ref|YP_460668.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
gi|85721557|gb|ABC76500.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
Length = 533
Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats.
Identities = 86/531 (16%), Positives = 194/531 (36%), Gaps = 26/531 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE++RK ++ W+ K L ++ V F+ + S TV V +++ + +
Sbjct: 1 MLELMRKHAKNWLMKFLLGMIIVVFIFY--FGTRTGKEKSETVAIVDGKEIALAEVQKEY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ G + E + + L + LD+L++ A + Q ++ L A V I
Sbjct: 59 SNLAEFYRRQYGGSLTDEMLKGLELKQNALDSLIAQAIIMQKAGELNLTATDDEVRNFIM 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F +D F+ ++ L + +E+ +MLS + + ++ S+ +
Sbjct: 119 AYPAFQ-RDGTFNEKIYQQMLRLNRMTPEEFEASQQRMLSAAKLEQLIQEAVKVSDQEVF 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
F E + Y++ PS L + +++ + +R PE +I + F
Sbjct: 178 DFFSFQNEQIKISYLMFKPADFKGAISPSRKDLETYLKEHGNEFRVPEQMQIKALFFPGR 237
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE-------------QLVFPNQKEADEAF 287
+ K +I ++ YE+++ ++ + ++
Sbjct: 238 DFAGKADIPESDIVDYYERHRSEFAQKGGKAPSLKEVKPRIINELAKISGMAAAAEQAKK 297
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV----SLADSIFSLAKKGDFTPVIH 343
++ + +L ++ F+ IP S I + KK + + V+
Sbjct: 298 AHDTIYQEENFDSYAAQNNLKTVTTDFFTLNNIPQPFSKVSDFSKIVADLKKDEISKVLS 357
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
GY V + K S+ +++++++A + +A + ++ L G S+
Sbjct: 358 DEEGYFFIKVGSRKSSYIPELKDIEQEVAKRYTEMEARNRCRKAADAALGRLKKGESLVR 417
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
I++ K+ + +G G + + +QL ++ + + +
Sbjct: 418 IAQENKLAPAE------SGFFKPGAAIPGLDANQQLSMALYQLSESNPFPDQTLEINNGF 471
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
+Q KE E ++K+ +K E + KEG
Sbjct: 472 AIIQFKERSKIDTTDYEAKKENLKQLLLMMKRNEYFMTWLENTKAAMIKEG 522
>gi|295698384|ref|YP_003603039.1| ppic-type ppiase domain protein [Candidatus Riesia pediculicola
USDA]
gi|291157251|gb|ADD79696.1| ppic-type ppiase domain protein [Candidatus Riesia pediculicola
USDA]
Length = 622
Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats.
Identities = 95/620 (15%), Positives = 236/620 (38%), Gaps = 23/620 (3%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K +++ + + G+ + ++ + +++ F ++++E + +
Sbjct: 3 KAISLMIILSIFMTGVGSYFLGNENSKKYIIKINGEQIHQDQFDQAFQKEKYFFLKNMHQ 62
Query: 74 VV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
+ ++ + ++L+ L+ L Q+ +G++ ++ EI +F ++
Sbjct: 63 EFLWKDHDQDLENFIRVQVLNKLIQETLLSQYSMKLGIKVSEDKIKEEIRNLSIFQ-ENG 121
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
KF + S L R I+ K K V+ + + +F F+ R
Sbjct: 122 KFDKRKYKSFLLRNQISGKTLSQEIKKNFLTKKVMQSYFLDEFLLPSESLEYAKFMFQKR 181
Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
+ + L + + S + +++ Y D + + RISYI D+ + + + +
Sbjct: 182 KIQTLTLPILQYQKLQNVSEEEMEAYYQNYPDQFLSSRKARISYIKLDIESQYENLNLKE 241
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--- 307
+E Y+KNK+ + +P + + K+A+ + L +G F +LA++
Sbjct: 242 EEF-EFYKKNKKFFTNPPKNYYSMIQLDSIKDAELMIEKLSQGFSFEELAKKFSTDPFSA 300
Query: 308 -SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
+ S+G KE++P V ++ +L K G + +I Y+I + +F E
Sbjct: 301 KKNGSIGWIEKEFLPQVIVSA---NLKKIGQISKIIEFEGKYLIFRLDRSINKSYKTFLE 357
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
K +I + + +K+SEK + + + E + +S + ++K + + D+ +
Sbjct: 358 SKSEIHDILLKSKSSEKFYKIREFILEEIKENSSDLLLKTQKKFQ-MKIYRTDWFENENL 416
Query: 427 GKEVAAIPYKEQLLFRVFGKD-----DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
+ K+ + + +D V + ++I++ + +
Sbjct: 417 PNSIDFQEVKKFIFSQNINQDFTQKNQNKKNIGIVEINKNLLFIIRIEDYCSEFVQPIHL 476
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD--IGKNLGASLLTTNQINRMDN 539
V + K K E+V ++ + + + + S I+R +
Sbjct: 477 VKEKIFKLISFRKAYEKVEKDGKFILDQLRNDQNVNKKTFFSEIGKISFQNEKTISRREI 536
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS--KVGPVQEKDKFISYLTQM 597
+ F + + S C + + ++ K+T+ + +E + S + +
Sbjct: 537 DRSSFLHQAFNMSISNRENPSYCMIRDGNQNLIIIKLTDIIREYPSTKEIELASSEVLRN 596
Query: 598 MNKDLLDSVIAYLKSQYSVT 617
N +L+S+ L S +
Sbjct: 597 FNFIVLESLFFNLFSHAKID 616
>gi|218961314|ref|YP_001741089.1| putative Peptidylprolyl isomerase [Candidatus Cloacamonas
acidaminovorans]
gi|167729971|emb|CAO80883.1| putative Peptidylprolyl isomerase [Candidatus Cloacamonas
acidaminovorans]
Length = 595
Score = 151 bits (381), Expect = 3e-34, Method: Composition-based stats.
Identities = 75/634 (11%), Positives = 177/634 (27%), Gaps = 57/634 (8%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RK + V I +V + G+ + L S + V K+ + +
Sbjct: 1 MLDQLRKKQK-VVIYIVAIVFILGMAAVGIGELL---SPKPYLGKVNGTKITYEMYQQKI 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ ++ + ++ + + LV+ Q I+ ++ V E+
Sbjct: 57 QEIYERYAEMYKDQ-PIDENMRRNIENQAWETLVNDILWQQQIKKHKIKITEDDVLTEMQ 115
Query: 121 RSPLFH-------GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
+P + +F ++S L ++ L R +
Sbjct: 116 NNPPQELMQNESLQTNGRFDKSKYLSALKNNPQFFAAMEEYVRGYLPRQKLQEKIKAQAG 175
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
+ L ++ S +I + ++A + +++K ++
Sbjct: 176 ITIDSLKAQYAKETDSISGKFIWFEP-NKSDPVTVTDAEIKAYYDKNRETEYKKGPASRI 234
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
L + K S L E + ++G
Sbjct: 235 KYLAFEEKPSDKDYASVKLLAE-----------------------------ELYNRARRG 265
Query: 294 KKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ F LA+E + SLG F K + + + K G+ + + SFG+
Sbjct: 266 EDFATLAKEYSDDPGSKDNGGSLGVFGKGQMVPE--FEQVAFALKVGEISKPVKTSFGWH 323
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
I +I + Q I + + ++ D L +D ++
Sbjct: 324 IIRCDSIATITKDNPQIKASHILLIVEASDETKNAILDKAESAAKLIKKKGIDAAAKELG 383
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ + V +E L + K + + + +
Sbjct: 384 VEVQETDWV------PHDQEYIPGIGNNGALLQFMRKGKEKAISDVITDQQNRKIVAVLT 437
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
++ E+V +K + K V KA + V +Y + F K +
Sbjct: 438 DNKKVYYEDFEKVKLRIKYQLEKEKKVANVKKKAEEFVAKYPSS-EYFSAAAKEGWQIIE 496
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--PVQEK 587
N N + + + S+++ K +
Sbjct: 497 LNNHKREQSVPNVGLCEEFTNAALALEAGQTSGLIHTKEGSFIISCTERIKPDFNAFAKD 556
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ + + + + ++ + +
Sbjct: 557 KERQEQIRKTLEDAAWNRWYDQMRKSAKIIDNRA 590
>gi|86158923|ref|YP_465708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85775434|gb|ABC82271.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 524
Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/523 (12%), Positives = 154/523 (29%), Gaps = 29/523 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDAL----FSVSGSSTVVSVGRQKVPFSS 55
ML+I+R + ++ + ++ + V F I +G + V + + +
Sbjct: 1 MLDIVRANKKGILSWLIVLGIVVVFAINFGPGSLSKGGAGCGGAPAYAARVNGKSISAAD 60
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
F ++ L Q+ G E A +GL ++ + LV Q G+ V
Sbjct: 61 FERQYENLLRFYQQQAGEGFTRELAAQLGLGRQAMGVLVDRELALQEARRRGVVVTDREV 120
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
+ + P F ++ +F ++ ++ + + + L ++G V ++
Sbjct: 121 SEAVHQMPAFQ-ENGQFRYETYLEAVRANYGSPGNFEAAVRDDLLYQKILGALVETVKVP 179
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + ++ ++ A S+A + ++ A +
Sbjct: 180 ATEVRAQWAASADRAALKFVRFPISAAQAEVKVSDADAKAFADREGARVEAFYKENADRY 239
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ + + E+ + + A + K
Sbjct: 240 DQKAKVHVRHVLARVAPGASADEEAAAR-------------KKIDEAAARVKKGEDFAKV 286
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
L+++ LG S+ + K G + + G+ +
Sbjct: 287 AAALSDDPNTKDRGGDLGFVSEGL--ADAAFAKAALALKAGQVSEPVRTPAGWHLIRAEE 344
Query: 356 IKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI- 413
+ P+ V+ + + DIA + + +A +E + + G ++DE
Sbjct: 345 VVPARQVTLEAARLDIARELVARDRAQALAREKAQAALDAARKGKALDEQFPPAGKGKQV 404
Query: 414 ----DLPLVDFAGKDVKGKE-VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ + G G V I +L P G + V
Sbjct: 405 TLGGTVLAAEQTGPFGAGSPVVPRIGAAPELAQAALTAKAGEVLPKVFDTPSGPVVAVVE 464
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
P R E ++ + +K + + L +
Sbjct: 465 LRESPDPARFEAE-RAGIEARLQGMKAEQVRRAWLEDLRGKAK 506
Score = 66.0 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/254 (13%), Positives = 81/254 (31%), Gaps = 22/254 (8%)
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
K+++E A ++ ++ +S D D G + + +
Sbjct: 266 ARKKIDEAAARVKKGEDFAKVAAALSDDPNTKDRGG----DLGFVSEGLADAAFAKAALA 321
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
V P G ++ + +E +PAR LE D+ ++ A+ ++ + Q
Sbjct: 322 LKAGQVSEPVRTPAGWHLI-RAEEVVPARQVTLEAARLDIARELVARDRAQALAREKAQA 380
Query: 507 VLEYSKEGKNFRDIGK--------NLGASLLTTNQINRMDNENKFFG-----YDGISQVF 553
L+ +++GK + LG ++L Q + +
Sbjct: 381 ALDAARKGKALDEQFPPAGKGKQVTLGGTVLAAEQTGPFGAGSPVVPRIGAAPELAQAAL 440
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAY 609
+ V + VV V + E+ + L M + + + +
Sbjct: 441 TAKAGEVLPKVFDTPSGPVVAVVELRESPDPARFEAERAGIEARLQGMKAEQVRRAWLED 500
Query: 610 LKSQYSVTVHDNLI 623
L+ + + + L+
Sbjct: 501 LRGKAKIEENVALL 514
>gi|213019460|ref|ZP_03335266.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
gi|212994882|gb|EEB55524.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Culex quinquefasciatus JHB]
Length = 578
Score = 151 bits (380), Expect = 3e-34, Method: Composition-based stats.
Identities = 121/604 (20%), Positives = 243/604 (40%), Gaps = 33/604 (5%)
Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
G+ + L + + VG++ + + ++ IS G V+ E+ + L
Sbjct: 2 GIGNLLSNDDERKELAKVGKEVITSDEYKLLYQNYKKQIS---GSDVSKEQVKK--LKYD 56
Query: 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
+L+ L+ L I ++GL+ + I + F +F H+ F L I E
Sbjct: 57 LLNALIEQKLLFNLISELGLKVGEESIKSHIKNTKYFQDDKGEFDHNKFHQTLNSLHITE 116
Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNL---LLDQAKRFYFENRSVDYIVLNNRHVPAI 205
KEYI+ K+L + P + +Q + ++ R VD + + + +
Sbjct: 117 KEYIEKLEKILPAMMFMTSLFKDNYPVTFGEGVDEQIYKNRYQTRVVDIVKITEDAITDV 176
Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
+P + L +E+ K N+ PEY+ YI D E +I IS++E+ + E + K
Sbjct: 177 PEPDDQALLDLYERNKSNFYYPEYRTAQYISLDQKYFEDQIRISDEEVDSIIEHQELKNQ 236
Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK-SLSDISLGSFSKEYIPDVS 324
+ +K + F Q+ EE K L + + + +K+++P+
Sbjct: 237 RDIFNV---IFPTKEKAEIARRALEESKASFEQIIEEFNKVKLDETRVNNITKDFLPEN- 292
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
K G+ + V+ +FG+ + V +I ++KKDI + + K+ EKV
Sbjct: 293 -MREKVFALKTGEVSEVLTSNFGWHVIKVESIHQISDEDLVDLKKDIRSVLTNQKSFEKV 351
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ ++ + G +++EIS + + VD +GKD G EV +F
Sbjct: 352 NDFINQVNYKIYNGATIEEISNNYNLPIQTIGPVDASGKDQSGNEVGNSSDFISFIFS-- 409
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+ + + V+I + +P + + EE K W++ E +
Sbjct: 410 ---REKDQKSYFKGVGDTVVGVKISDIVPPKLQNFEESRESAIKLWRSEFIKERMFKMGQ 466
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
++ ++ ++ D+ + G L+ QI R + + + + I ++F+ P
Sbjct: 467 EVAVQLREK----TDLEEMQGIKLVKGQQIQRNE---QNYPFSFIEEIFNMKTTNSVTDP 519
Query: 565 IENGLSYVVFKVT--NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
I+ ++ + +S G + D + L + +I+YLKS+Y V V+ +
Sbjct: 520 IQYNNEIIIGVLKQMHSSNGKLNMLDTGKRVMIS-----LKEQLISYLKSKYRVEVNHAM 574
Query: 623 IQRY 626
I
Sbjct: 575 IDDI 578
>gi|322652369|gb|EFY48724.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
Length = 481
Score = 150 bits (376), Expect = 9e-34, Method: Composition-based stats.
Identities = 89/494 (18%), Positives = 199/494 (40%), Gaps = 23/494 (4%)
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
+ G+ +Y L+ ++ G D+ + R V V++
Sbjct: 1 NQMGMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNA 60
Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
+ A ++ ++ ++++ K + PE R+SYI D + +S+ ++QA Y+++
Sbjct: 61 LAAKQQVTDQEVSSYYDQNKARFMTPEQFRVSYIKLDAATMQA--PVSDADIQAYYDQHV 118
Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSK 317
+++ PE + + +A +L KG+ F LA+E+ + +G +
Sbjct: 119 DQFTQPERIRYSIIQTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEE 178
Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
L ++ L +KG + VI S G+++A + +I+P+ EV+ DIA +++
Sbjct: 179 SATV-PELKNAG--LKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQ 235
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
KA + +++ + + + ++ E++ + + +D +E+ P +
Sbjct: 236 EKALDAYYALQQKVSDAASN--DNESLAGAEQVAGVKAVETGWFSRDTLPEEMNFKPVAD 293
Query: 438 QLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ V P + + V++ E P + L EV V K K
Sbjct: 294 AIFNGGLVGENGTPGPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKA 353
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
++ A +L++E K GK + K G S ++R + + S
Sbjct: 354 EQQAKLDAEKLLVEL-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSL 407
Query: 556 PVEMVKCFPIENG--LSYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
P + + + N + V+ K G P +K + +TQ + + +++++ L+
Sbjct: 408 PTKDKPVYGVANDMQGNVVLLAFDEVKAGAMPEVQKKAMVQGITQNNAQIVFEALMSNLR 467
Query: 612 SQYSVTVHDNLIQR 625
+ + + D L Q+
Sbjct: 468 KEAKIKIGDALEQQ 481
>gi|254230430|ref|ZP_04923809.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sp. Ex25]
gi|151937031|gb|EDN55910.1| peptidyl-prolyl cis-trans isomerase D [Vibrio sp. Ex25]
Length = 273
Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/256 (17%), Positives = 115/256 (44%), Gaps = 5/256 (1%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ KI L ++ + F+ G+ + S + ++ VG ++P F +++ E + +
Sbjct: 2 SIAVKIILGLIILSFVFAGVGSYIVSGNN-NSAAKVGNTEIPRGEFEMAYQNERNRMQAQ 60
Query: 71 IGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+G + ++ A K +LD +++ LDQ E +GL +V I P F
Sbjct: 61 LGDYFSQMLADPAYVESFRKSVLDRMINDVLLDQQAEALGLRISDTQVRSMILDMPQFQS 120
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
+ +F +++ + L R G + + ++ + L R ++ + + +
Sbjct: 121 -NGQFDQEIYQASLRRAGFSPDSFAEYMRRELVREQLLNALQNSEFILPGEVQAEGKLFT 179
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
+ R + I ++ + ++ + Q+++ DN+ PE +++YI ++++
Sbjct: 180 QTRDIRTIKIDLAEFAKNIELTDEEIQQYYKANPDNFTRPEQVKVAYIELSAEALKEQVN 239
Query: 248 ISNDELQAEYEKNKEK 263
+S+ E++ Y+++ ++
Sbjct: 240 VSDAEVKKYYDEHLKQ 255
>gi|218680686|ref|ZP_03528583.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
[Rhizobium etli CIAT 894]
Length = 194
Score = 147 bits (369), Expect = 6e-33, Method: Composition-based stats.
Identities = 70/194 (36%), Positives = 117/194 (60%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I+R+A++TWVAK+ +++L F IWG+S +L + S+TVV+VG Q V + F ++
Sbjct: 1 MFHILRRAAQTWVAKLLMLLLVASFGIWGVSRSLITGGNSTTVVTVGDQHVDVNEFHLAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++++ +SQ+ G + E+AR+ G+++++L LV+GA+LDQ ED+ L R+ IA
Sbjct: 61 QRQVASLSQQFGMRLTPEQARAFGVEQQVLAQLVAGASLDQLAEDMNLGLSEDRLAQLIA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F + KF ++F+SRL I + +YI +K+ R+ VV G L+D
Sbjct: 121 DDPAFKAVNGKFDRELFISRLRNANIRQDDYIKERSKVAVRSQVVDAISNGFTAPKTLVD 180
Query: 181 QAKRFYFENRSVDY 194
K + E+RS+DY
Sbjct: 181 ALKLYGDESRSIDY 194
>gi|260219734|emb|CBA26579.1| hypothetical protein Csp_E36670 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 587
Score = 146 bits (367), Expect = 1e-32, Method: Composition-based stats.
Identities = 75/485 (15%), Positives = 181/485 (37%), Gaps = 26/485 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + +RK ++ + + +++ F++ G+ G +TV +VG K+ + +
Sbjct: 1 MFDFVRKHTK-VLMFLMFLLIIPAFVLVGVDGYKSMAGGGATVATVGNAKITQEEWDFAH 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
K E+ + + ++ + S L+ LV + + ++ + + R+ E+
Sbjct: 60 KNEVDRLRASV-PNLDPKLLDSAEARYTTLERLVREKVMAEAVQTAHMTTSNARLARELQ 118
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++P D + + A +G+ + + + LS V G
Sbjct: 119 QNPTIASLRKPDGTLDMERYRQLAASQGLTPEGFEARVRRDLSLMQVESAVTGTAFSPKA 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L D A +FE R V + + + +PS+A + +F+ +++ E + Y++
Sbjct: 179 LSDLALNAFFERREVQVLRFSPADYASKINPSDADIDAYFQANSALFQSTETANVEYVVL 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D+ +K + ++ +L++ +E+N + + E R ++ K+ A ++ K +
Sbjct: 239 DLEAVKKTVSVNEADLKSYFEQNASRLSAKEERRASHILINAPKDMPAADRAKAKERATA 298
Query: 298 QLA-----------------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
LA ++ G + L F + + + KKG+ +
Sbjct: 299 LLAQVRKAPDSFAEVAKKNSQDVGSAPRGGDLDFFGRGAMVKPFEDAAFSM--KKGEISD 356
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGT 399
++ FG+ I ++++K + +F+E + + ++R A K E +
Sbjct: 357 LVESDFGFHIIKLADVKGAKQPTFEEARVSLEPELRAQSAQRKFAEVAEAFTNGVYEQSD 416
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S+ ++ R K+ V +A P + +F +
Sbjct: 417 SLKPVAERLKLEVKTATNVQRQPLPGAAGPLAN-PKLLEAIFSTDSLEKKRXXXXXXXAN 475
Query: 460 DGSYM 464
+
Sbjct: 476 PNAVA 480
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/320 (7%), Positives = 71/320 (22%), Gaps = 55/320 (17%)
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ ++ A+ + I + D + +E + +
Sbjct: 255 KSYFEQNASRLSAKEERRASHILINAPKDMPAADRAKAKERATALLAQVRKAPDSFAEVA 314
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D G F + + D + +++ +
Sbjct: 315 KKNSQDVGSAPRGGDLDFFGRGAMVKPFEDAAFSMKKGEISDLVESDFGFHIIKLADVKG 374
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
A+ EE ++ + + + + A ++ + + + + L + T
Sbjct: 375 AKQPTFEEARVSLEPELRAQSAQRKFAEVAEAFTNGVYEQSDSLKPVAERLKLEVKTATN 434
Query: 534 INRMD--------------------------------------------------NENKF 543
+ R + +
Sbjct: 435 VQRQPLPGAAGPLANPKLLEAIFSTDSLEKKRXXXXXXXANPNAVAMPAAVTVSRDAAQG 494
Query: 544 FGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNS---KVGPVQEKDKFISYLTQMM 598
+ + F + G YVV +V + + + Q +
Sbjct: 495 LAGAVVDAALKVNPAKLPGFTGADVGGQGYVVVRVNKVLPRNAVEEAKGKQEQAQYAQWV 554
Query: 599 NKDLLDSVIAYLKSQYSVTV 618
+ LK ++ V +
Sbjct: 555 AASESSAYYESLKQRFKVQI 574
>gi|219681828|ref|YP_002468214.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471530|ref|ZP_05635529.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|219624671|gb|ACL30826.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
Length = 623
Score = 146 bits (366), Expect = 1e-32, Method: Composition-based stats.
Identities = 104/627 (16%), Positives = 233/627 (37%), Gaps = 35/627 (5%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + K L V+ + ++ +S + + +V +K+ F+ F + E
Sbjct: 8 RLNSIIVKFILGVIILSLILSTISIYINRDF-EKYIATVNGEKISFNLFKKMYFIEREKQ 66
Query: 68 SQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSP 123
+ +G + + +L L++ L+Q+ +++ LE + + I SP
Sbjct: 67 KKILGKNFFKFSHNENFTKETYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSP 126
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+F K+NKFS + +++ L EYI+ K ++ +++
Sbjct: 127 IFQ-KNNKFSKERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNII 185
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+ + R + ++ + +N +F+K +DN+ PE +I+++ +
Sbjct: 186 KLLSQKRIIKKAIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFVELKTDNFK 245
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF-----IQ 298
E N E+ Y KN +Y + E R + N+++A L + +
Sbjct: 246 IHCE--NKEIYDWYIKNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQE 303
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+ + S D +G S + IPD +L KK + VI ++I ++ +
Sbjct: 304 QSTDPISSKKDGDIGWISIDLIPDE---IKHANLNKKNQISDVIPFHNEFLIVKLNETQI 360
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
EV I Q++ K+ + E ++ L E +E + +
Sbjct: 361 GTQKKIYEVFDSIKKQIKQKKSLDLYNELKNKISNNLKNDPGKIERILKENNIL--IQET 418
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH--TVALPDGSYMWVQIKESIPARD 476
D+ K K + K+ + + + D K + L ++IK+
Sbjct: 419 DWFDKKSIPKVLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEI 478
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ E V ++ K + +K +E K+ +++ + ++ + K I+R
Sbjct: 479 QHFENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQG---REKLFKQSNLYFTDPEIISR 535
Query: 537 MDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--F 590
D S VFS P + + ++++ + EK+K
Sbjct: 536 YDL------SAITSIVFSLPHPQKGKKIYTLYNDKNKNFIIISLEKVYNTNFSEKEKNVI 589
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ YL++ + + +S++ L+ + +
Sbjct: 590 LEYLSRHNTEIIFNSILKDLREKSIIK 616
>gi|15617076|ref|NP_240289.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|11386976|sp|P57550|PPID_BUCAI RecName: Full=Peptidyl-prolyl cis-trans isomerase D; Short=PPIase
D; AltName: Full=Rotamase D
gi|25403639|pir||G84985 peptidylprolyl isomerase (EC 5.2.1.8) [imported] - Buchnera sp.
(strain APS)
gi|10039141|dbj|BAB13175.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 623
Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats.
Identities = 104/627 (16%), Positives = 233/627 (37%), Gaps = 35/627 (5%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + K L V+ + ++ +S + + +V +K+ F+ F + E
Sbjct: 8 RLNSIIVKFILGVIILSLILSTISIYINRDF-EKYIATVNGEKISFNLFKKMYFIEREKQ 66
Query: 68 SQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSP 123
+ +G + + +L L++ L+Q+ +++ LE + + I SP
Sbjct: 67 KKILGKNFFKFSHNENFTKETYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSP 126
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+F K+NKFS + +++ L EYI+ K ++ +++
Sbjct: 127 IFQ-KNNKFSKERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNII 185
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+ + R + ++ + +N +F+K +DN+ PE +I+++ +
Sbjct: 186 KLLSQKRIIKKAIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFVELKTDNFK 245
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF-----IQ 298
E N E+ Y +N +Y + E R + N+++A L + +
Sbjct: 246 IHCE--NKEIYDWYIRNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQE 303
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+ + S D +G S + IPD +L KK + VI ++I ++ +
Sbjct: 304 QSTDPISSKKDGDIGWISIDLIPDE---IKHANLNKKNQISDVIPFHNEFLIVKLNETQI 360
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
EV I Q++ K+ + E ++ L E +E + +
Sbjct: 361 GTQKKIYEVFDSIKKQIKQKKSLDLYNELKNKISNNLKNDPGKIERILKENNIL--IQET 418
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH--TVALPDGSYMWVQIKESIPARD 476
D+ K K + K+ + + + D K + L ++IK+
Sbjct: 419 DWFDKKSIPKVLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEI 478
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ E V ++ K + +K +E K+ +++ + ++ K K I+R
Sbjct: 479 QHFENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQGRKKL---FKQSNLYFTDPEIISR 535
Query: 537 MDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--F 590
D S VFS P + + ++++ + EK+K
Sbjct: 536 YDL------SAITSIVFSLPHPQKGKKIYTLYNDKNKNFIIISLEKVYNTNFSEKEKNVI 589
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ YL++ + + +S++ L+ + +
Sbjct: 590 LEYLSRHNTEIIFNSILKDLREKSIIK 616
>gi|325265616|ref|ZP_08132306.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC
33394]
gi|324982886|gb|EGC18508.1| peptidyl-prolyl cis-trans isomerase [Kingella denitrificans ATCC
33394]
Length = 608
Score = 145 bits (363), Expect = 3e-32, Method: Composition-based stats.
Identities = 96/634 (15%), Positives = 236/634 (37%), Gaps = 52/634 (8%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K ++++ L ++ V F+ +G++ +V +G Q + ++ +
Sbjct: 1 MFHAIEKYRT--LSQVLLGIIGVSFVGFGIASFEIVRDN-RYIVKIGDQVINRAALDEAV 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ SQ G + +++ LV A L + + +G+ ++ I
Sbjct: 58 RN-----SQASGGSAS---------REEVFQTLVQRAYLMEGAKALGIAVSDTQIKQGIV 103
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P+FH + KFS + F + L ++E ++ + L+ ++ + ++ +
Sbjct: 104 DAPIFHDEQGKFSPERFQTFLKNNHLSESAFMQMERERLTLVSLLQ-MLNSNVVTSGQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R + V N + A +A L ++++ +K NY + Y++
Sbjct: 163 RYIQTQMAERVIRTSVFNPENYAAQVKAGDAELQKYYDAHKSNYAVAPGVKYEYMVVSPK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK-------- 292
+ K +S +E+QA + + P +A ++ ++
Sbjct: 223 DLVDKQTVSAEEVQAALKTATTNQKPTRRIAHIMINAPKSADAATRQKAREQAEKIAQEA 282
Query: 293 ---GKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
KF +LA++ + + LG+ ++ +P L D+ F LA+ G + V+
Sbjct: 283 KASPDKFAELAKQYSQDTGSAQNGGDLGALTQGSLPAKPLDDAAFKLAQ-GAVSDVVETD 341
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FGY I V I+ + + + ++++ KA + ++ + + EF + +
Sbjct: 342 FGYHIVRVLEIQGNDA---AAQEARVRQELQLKKAQQAYEKIREEIAEFTLNTPDLKAAA 398
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
++ + ++ + G + L +S+ DG+ +
Sbjct: 399 QKFGLTVQQQN--EWLTQANAGSLHVPKAVADTLFSEDVMTKKHISEG---ISADGATWF 453
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++ ++ PA L ++ D+ ++ + A Q + K +
Sbjct: 454 VRVTDTRPAGTETLATARDRIRADFVRAESIRLARAAAQQAQTDLQAR--------KAVT 505
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGP 583
+ + M + D + + + P + + NG+ +V + N+ +G
Sbjct: 506 LAWTPEQNVLPMQMQAALVPADYKAFMAAVPNNGQPAYAVVERNGMVELVEVLKNNPLGG 565
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
Q L Q+ + + + + YL+++
Sbjct: 566 GQIIQAVRMQLAQLRGETVTQAYLQYLQTKIPTK 599
>gi|46204905|ref|ZP_00049316.2| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
magnetotacticum MS-1]
Length = 294
Score = 144 bits (361), Expect = 5e-32, Method: Composition-based stats.
Identities = 71/298 (23%), Positives = 126/298 (42%), Gaps = 10/298 (3%)
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLA 396
+ + G FG V+ V+ I+P F EVK +I ++ + + E + +E+ A
Sbjct: 1 MSEPVKGRFGTVLLRVTGIEPGDIKPFDEVKDEIRKEVALRRVREGEFDKAQDAIEDARA 60
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
+ EI++ + + +P VD G D GK V IP KE L F D + +
Sbjct: 61 SAKPLAEIAKDRGLTLLGIPAVDAQGNDPSGKPVEGIPDKETTLPAAFRADVG-NDTEAL 119
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
G +W + + P+ ++ L EV + K W + A+ + +K+ +L K G+
Sbjct: 120 RTKTGGTIWYDVVKIDPSHEKPLSEVRDEAVKGWTQAEVAKRLVAKSKELTERLEK-GEA 178
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
+ + G L + R ++ D + ++F+ PV P G VFKV
Sbjct: 179 IEAVAQETGLPLKQVADLGRNQTKDD-LSGDIVERIFTTPVGKAASAPSGEGR--AVFKV 235
Query: 577 TNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
T + V + ++ L + D+L IA ++ V V+ ++R L GE
Sbjct: 236 TAATVPAFVAGTPSDRQLVTSLRTALADDVLGEFIAEVQKSAGVNVNQTALRRALGGE 293
>gi|165919397|ref|ZP_02219463.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
gi|165916913|gb|EDR35517.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
Length = 522
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 84/496 (16%), Positives = 189/496 (38%), Gaps = 27/496 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ +
Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+++ S + G + A++ L ++ L NL+ L E +G + I
Sbjct: 61 FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F ++ KFS F L + +++ ++ V G +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ R Y+++++ + + ++ +++K++++++APE I+Y+L
Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYF------SPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+++ +S+ E++ YE N+E + ++Q + + + ++
Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKE-------YIPDVSLADSIFSLAKKGDFTPVIH-GS 345
+ +L + FS+E P + A + + G+ + VI
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAANPKIVAAAFSDDVLQGGNNSDVIELKD 357
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
V+ V + +PS + + V I +Q++ A K ++ + G S++ I+
Sbjct: 358 GSLVVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVESIA 417
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + V K + +A+ L +G
Sbjct: 418 KANHLFWRNEKEVKRNNKSIPAAVMASAFSIPLKKDHSMTTTV---------LNNGDSAV 468
Query: 466 VQIKESIPARDRKLEE 481
VQ+ PA + + E
Sbjct: 469 VQLTAIKPANFKNITE 484
Score = 94.9 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 47/313 (15%), Positives = 106/313 (33%), Gaps = 22/313 (7%)
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+E + L + S + + + + SF +VK I +
Sbjct: 219 RESFKAPEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGK--SFNQVKDQIKQSLL 276
Query: 377 ITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
K + + + +L TS++ +R+ + L G+ I
Sbjct: 277 QQKINTLLTKKSDQLSTITYTNPTSLEPAARQLNLKINTTLLFSREGEKEG------IAA 330
Query: 436 KEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
+++ F D + + L DGS + +++K+ P+ L+ V ++ KT
Sbjct: 331 NPKIVAAAFSDDVLQGGNNSDVIELKDGSLVVLRVKDHQPSHVLPLKTVSLQIEHQLKTQ 390
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ S A ++ E EG++ I K ++ R + K ++ F
Sbjct: 391 LAQAKASLLAGEIQNEIH-EGRSVESIAKANHLFWRNEKEVKRNN---KSIPAAVMASAF 446
Query: 554 SGP--VEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSV 606
S P + + N V ++T K ++K+ + L+ +
Sbjct: 447 SIPLKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITEKQKNSLENLLSTQLGNLEYQFY 506
Query: 607 IAYLKSQYSVTVH 619
+ +S+ + ++
Sbjct: 507 MQAARSRAKIKIN 519
>gi|161830280|ref|YP_001597297.1| hypothetical protein COXBURSA331_A1623 [Coxiella burnetii RSA 331]
gi|161762147|gb|ABX77789.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
Length = 522
Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats.
Identities = 84/496 (16%), Positives = 189/496 (38%), Gaps = 27/496 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ +
Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+++ S + G + A++ L ++ L NL+ L E +G + I
Sbjct: 61 FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F ++ KFS F L + +++ ++ V G +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ R Y+++++ + + ++ +++K++++++APE I+Y+L
Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYF------SPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+++ +S+ E++ YE N+E + ++Q + + + ++
Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEY-------IPDVSLADSIFSLAKKGDFTPVIH-GS 345
+ +L + FS+E P + A + + G+ + VI
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAVNPKIVAAAFSDDVLQGGNNSDVIELKD 357
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
V+ V + +PS + + V I +Q++ A K ++ + G S++ I+
Sbjct: 358 GSLVVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVESIA 417
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + V K + +A+ L +G
Sbjct: 418 KANHLFWRNEKEVKRNNKSIPAAVMASAFSIPLKKDHSMTTTV---------LNNGDSAV 468
Query: 466 VQIKESIPARDRKLEE 481
VQ+ PA + + E
Sbjct: 469 VQLTAIKPANFKNITE 484
Score = 94.2 bits (231), Expect = 7e-17, Method: Composition-based stats.
Identities = 45/311 (14%), Positives = 100/311 (32%), Gaps = 18/311 (5%)
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+E + L + S + + + + SF +VK I +
Sbjct: 219 RESFKAPEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGK--SFNQVKDQIKQSLL 276
Query: 377 ITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
K + + + +L TS++ +R+ + L G+ I
Sbjct: 277 QQKINTLLTKKSDQLSTITYTNPTSLEPAARQLNLKINTTLLFSREGEKEGIAVNPKI-- 334
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ + L DGS + +++K+ P+ L+ V ++ KT
Sbjct: 335 --VAAAFSDDVLQGGNNSDVIELKDGSLVVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLA 392
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
+ S A ++ E EG++ I K ++ R + K ++ FS
Sbjct: 393 QAKASLLAGEIQNEIH-EGRSVESIAKANHLFWRNEKEVKRNN---KSIPAAVMASAFSI 448
Query: 556 P--VEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIA 608
P + + N V ++T K ++K+ + L+ +
Sbjct: 449 PLKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITEKQKNSLENLLSTQWGNLEYQFYMQ 508
Query: 609 YLKSQYSVTVH 619
+S+ + ++
Sbjct: 509 AARSRAKIKIN 519
>gi|29654742|ref|NP_820434.1| hypothetical protein CBU_1451 [Coxiella burnetii RSA 493]
gi|29542010|gb|AAO90948.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii RSA 493]
Length = 522
Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats.
Identities = 85/496 (17%), Positives = 189/496 (38%), Gaps = 27/496 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ +
Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+++ S + G + A++ L ++ L NL+ L E +G + I
Sbjct: 61 FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F ++ KFS F L + +++ ++ V G +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ R Y+++++ + + ++ +++K++++++APE I+Y+L
Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYF------SPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+++ +S+ E++ YE N+E + ++Q + + + ++
Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEY-------IPDVSLADSIFSLAKKGDFTPVIH-GS 345
+ +L + FS+E P + A + + G+ + VI
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAVNPKIVAAAFSDDVLQGGNNSDVIELKD 357
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
VI V + +PS + + V I +Q++ A K ++ + G S++ I+
Sbjct: 358 GSLVILRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVESIA 417
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + V K + +A+ L +G
Sbjct: 418 KANHLFWRNEKEVKRNNKSIPAAVMASAFSIPLKKDHSMTTTV---------LNNGDSAV 468
Query: 466 VQIKESIPARDRKLEE 481
VQ+ PA + + E
Sbjct: 469 VQLTAIKPANFKNITE 484
Score = 93.8 bits (230), Expect = 8e-17, Method: Composition-based stats.
Identities = 45/311 (14%), Positives = 100/311 (32%), Gaps = 18/311 (5%)
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+E + L + S + + + + SF +VK I +
Sbjct: 219 RESFKAPEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGK--SFNQVKDQIKQSLL 276
Query: 377 ITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
K + + + +L TS++ +R+ + L G+ I
Sbjct: 277 QQKINTLLTKKSDQLSTITYTNPTSLEPAARQLNLKINTTLLFSREGEKEGIAVNPKI-- 334
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ + L DGS + +++K+ P+ L+ V ++ KT
Sbjct: 335 --VAAAFSDDVLQGGNNSDVIELKDGSLVILRVKDHQPSHVLPLKTVSLQIEHQLKTQLA 392
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
+ S A ++ E EG++ I K ++ R + K ++ FS
Sbjct: 393 QAKASLLAGEIQNEIH-EGRSVESIAKANHLFWRNEKEVKRNN---KSIPAAVMASAFSI 448
Query: 556 P--VEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIA 608
P + + N V ++T K ++K+ + L+ +
Sbjct: 449 PLKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITEKQKNSLENLLSTQWGNLEYQFYMQ 508
Query: 609 YLKSQYSVTVH 619
+S+ + ++
Sbjct: 509 AARSRAKIKIN 519
>gi|154706549|ref|YP_001423952.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
5J108-111]
gi|154355835|gb|ABS77297.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
5J108-111]
Length = 522
Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats.
Identities = 84/496 (16%), Positives = 189/496 (38%), Gaps = 27/496 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ +
Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+++ S + G + A++ L ++ L NL+ L E +G + I
Sbjct: 61 FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F ++ KFS F L + +++ ++ V G +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLMSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ R Y+++++ + + ++ +++K++++++APE I+Y+L
Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYF------SPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+++ +S+ E++ YE N+E + ++Q + + + ++
Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKE-------YIPDVSLADSIFSLAKKGDFTPVIH-GS 345
+ +L + FS+E P + A + + G+ + VI
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAANPKIVAAAFSDDVLQGGNNSDVIELKD 357
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
V+ V + +PS + + V I +Q++ A K ++ + G S++ I+
Sbjct: 358 GSLVVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVESIA 417
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + V K + +A+ L +G
Sbjct: 418 KANHLFWRNEKEVKRNNKSIPAAVMASAFSIPLKKDHSMTTTV---------LNNGDSAV 468
Query: 466 VQIKESIPARDRKLEE 481
VQ+ PA + + E
Sbjct: 469 VQLTAIKPANFKNITE 484
Score = 93.8 bits (230), Expect = 8e-17, Method: Composition-based stats.
Identities = 47/313 (15%), Positives = 105/313 (33%), Gaps = 22/313 (7%)
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+E + L + S + + + + SF +VK I +
Sbjct: 219 RESFKAPEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGK--SFNQVKDQIKQSLL 276
Query: 377 ITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
K + + + +L TS++ +R+ + L G+ I
Sbjct: 277 QQKINTLLTKKSDQLSTITYTNPTSLEPAARQLNLKINTTLLFSREGEKEG------IAA 330
Query: 436 KEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
+++ F D + + L DGS + +++K+ P+ L+ V ++ KT
Sbjct: 331 NPKIVAAAFSDDVLQGGNNSDVIELKDGSLVVLRVKDHQPSHVLPLKTVSLQIEHQLKTQ 390
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ S A ++ E EG++ I K ++ R + K ++ F
Sbjct: 391 LAQAKASLLAGEIQNEIH-EGRSVESIAKANHLFWRNEKEVKRNN---KSIPAAVMASAF 446
Query: 554 SGP--VEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSV 606
S P + + N V ++T K ++K+ + L+
Sbjct: 447 SIPLKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITEKQKNSLENLLSTQWGNLEYQFY 506
Query: 607 IAYLKSQYSVTVH 619
+ +S+ + ++
Sbjct: 507 MQAARSRAKIKIN 519
>gi|219682383|ref|YP_002468767.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|219622116|gb|ACL30272.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|311086780|gb|ADP66861.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
Length = 623
Score = 143 bits (360), Expect = 7e-32, Method: Composition-based stats.
Identities = 104/627 (16%), Positives = 231/627 (36%), Gaps = 35/627 (5%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ K L V+ + ++ +S + + +V +K+ F+ F + E
Sbjct: 8 RLNRIIVKFILGVIILSLILSTISIYINRDF-EKYIATVNGEKISFNLFKKMYFIEREKQ 66
Query: 68 SQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSP 123
+ +G + + +L L++ L+Q+ +++ LE + + I SP
Sbjct: 67 KKILGKNFFKFSHNENFTKETYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSP 126
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+F K+NKFS + +++ L EYI+ K ++ +++
Sbjct: 127 IFQ-KNNKFSKERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNII 185
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+ + R + ++ + +N +F+K +DN+ PE +I+++ +
Sbjct: 186 KLLSQKRIIKKAIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFVELKTDNFK 245
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF-----IQ 298
E N E+ Y +N +Y + E R + N+++A L + +
Sbjct: 246 IHCE--NKEIYDWYIRNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQE 303
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+ + S D +G S + IPD +L KK + VI ++I + +
Sbjct: 304 QSTDPISSKKDGDIGWISIDLIPDE---IKHANLNKKNQISDVIPFHNEFLIVKLDETQI 360
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
EV I Q++ K+ + E ++ L E +E + +
Sbjct: 361 GTQKKIYEVFDSIKKQIKQKKSLDLYNELKNKISNNLKNDPGKIERILKENNIL--IQET 418
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH--TVALPDGSYMWVQIKESIPARD 476
D+ K K + K+ + + + D K + L ++IK+
Sbjct: 419 DWFDKKSIPKVLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEI 478
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ E V ++ K + +K +E K+ +++ + ++ K K I+R
Sbjct: 479 QHFENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQGRKKL---FKQSNLYFTDPEIISR 535
Query: 537 MDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--F 590
D S VFS P + + ++++ + EK+K
Sbjct: 536 YDL------SAITSIVFSLPHPQKGKKIYTLYNDKNKNFIIISLEKVYNTNFSEKEKNVI 589
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ YL++ + + +S++ L+ + +
Sbjct: 590 LEYLSRHNTEIIFNSILKDLREKSIIK 616
>gi|212219179|ref|YP_002305966.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
gi|212013441|gb|ACJ20821.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
Length = 522
Score = 143 bits (360), Expect = 8e-32, Method: Composition-based stats.
Identities = 83/496 (16%), Positives = 188/496 (37%), Gaps = 27/496 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ +
Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+++ S + G + A++ L ++ L NL+ L E +G + I
Sbjct: 61 FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F ++ KFS F L + +++ ++ V G +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ R Y+++++ + + ++ +++K++++++APE I+Y+L
Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYF------SPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+++ +S+ E++ YE N+E + ++Q + + + ++
Sbjct: 238 EMILQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKE-------YIPDVSLADSIFSLAKKGDFTPVIH-GS 345
+ +L + FS+E P + A + + G+ + VI
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAANPKIVAAAFTGDVLQGGNNSDVIELKD 357
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
V+ V + +PS + + V I +Q++ A K ++ + G S++ I+
Sbjct: 358 GSLVVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVESIA 417
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + V K + +A+ + D
Sbjct: 418 KANHLFWRNEKEVKRNNKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSD---------V 468
Query: 466 VQIKESIPARDRKLEE 481
VQ+ PA + + E
Sbjct: 469 VQLTAIKPANFKNITE 484
Score = 93.0 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/264 (15%), Positives = 90/264 (34%), Gaps = 16/264 (6%)
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAG 422
F +VK I + K + + + +L TS++ +R+ + L G
Sbjct: 264 FNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQLNLKINTTLLFSREG 323
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
+ I + + L DGS + +++K+ P+ L+ V
Sbjct: 324 EKEGIAANPKI----VAAAFTGDVLQGGNNSDVIELKDGSLVVLRVKDHQPSHVLPLKTV 379
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
++ KT + S A ++ E EG++ I K ++ R + K
Sbjct: 380 SLQIEHQLKTQLAQAKASLLAGEIQNEIH-EGRSVESIAKANHLFWRNEKEVKRNN---K 435
Query: 543 FFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLT 595
++ FS P + + N V ++T K ++K+ + L+
Sbjct: 436 SIPAAVMASAFSIPLKKDHSMTTTVLNNGDSDVVQLTAIKPANFKNITEKQKNSLENLLS 495
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVH 619
+ + +S+ + ++
Sbjct: 496 TQLGNLEYQFYMQAARSRAKIKIN 519
>gi|294788519|ref|ZP_06753761.1| putative peptidyl-prolyl cis-trans isomerase [Simonsiella muelleri
ATCC 29453]
gi|294483396|gb|EFG31081.1| putative peptidyl-prolyl cis-trans isomerase [Simonsiella muelleri
ATCC 29453]
Length = 609
Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 86/632 (13%), Positives = 216/632 (34%), Gaps = 53/632 (8%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K T A++ L ++ + F+ +G S F + +V +G Q + N+
Sbjct: 5 MFASIEKHRTT--AQVLLALIGISFIGFGASQFSFGSNNQ-YIVKIGDQIITRYQLDNAV 61
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ A + + L++ A L + + +GL + I
Sbjct: 62 R------------------ANQGATREAVFRQLMNRAYLTEGAKQLGLSISETELKQSIV 103
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ FH + KFS ++F LA G++E+++++ + L +G +G ++ +
Sbjct: 104 NNKNFHDANGKFSTELFKQILASNGLSEQQFLESERETLLLES-IGKILGSNVVADSQVA 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R + + +N + + +A L ++++ + +Y P+ + ++ F
Sbjct: 163 QFLNSTMAMRKIRNVGVNPQAFESKVKIDDASLKKFYDANQKSYTLPQAVQFEFVRFSPQ 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------FQSLKKGK 294
+K +S++E++ + + + + F + K+ + ++
Sbjct: 223 TLAEKETVSDEEVKQAQQDVQNSSTNKREIAHILIPFGSNKDKAKEEAQKIAKEAQANPD 282
Query: 295 KFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
KF +LA++ + +G FS + + G + V+ +FGY I
Sbjct: 283 KFAELAKKYSQDSDSKDKSGIIGEFSAQGNLVNDAFKKAAFGVESGGVSDVVESNFGYHI 342
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
N+ + + + ++ +E + S+ + + + +
Sbjct: 343 IRAKNLGNATASDDTAARDAAKLKKAQQTYTKLREELSAAAFD---DSGSLKKAAEKLGL 399
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
A IP D + + DG+ +V+ +
Sbjct: 400 TVQTHSE----WLTRDNAPAAKIPNAVVDALFSDDVFDKKHNSEAITV-DGTTWFVRATQ 454
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
+ + + V VK D+ ++A + +A +++ E K L +
Sbjct: 455 TRQQTVQAFDAVKERVKGDFVRSESARLATDEAKKILAELQAG--------KMLALNWSP 506
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGPVQEKDK 589
+++ + F + + + P + + + L + +V K + +
Sbjct: 507 VQEVSPEQAQGNFSPEAYANFMKTIPKNGKPAYVLIDNLGAPQLIEVQTVKQAAAADVET 566
Query: 590 FISYLTQMM----NKDLLDSVIAYLKSQYSVT 617
+ M+ + ++ + L
Sbjct: 567 LSTVKQIMLPVTERNAMAEAFMDNLSKIVKTE 598
>gi|311087368|gb|ADP67448.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
gi|311087867|gb|ADP67946.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 623
Score = 143 bits (359), Expect = 8e-32, Method: Composition-based stats.
Identities = 104/627 (16%), Positives = 232/627 (37%), Gaps = 35/627 (5%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ K L V+ + ++ +S + + +V +K+ F+ F + E
Sbjct: 8 RLNRIIVKFILGVIILSLILSTISIYINRDF-EKYIATVNGEKISFNLFKKMYFIEREKQ 66
Query: 68 SQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSP 123
+ +G + + +L L++ L+Q+ +++ LE + + I SP
Sbjct: 67 KKILGKNFFKFSHNENFTKETYNYVLSQLINNVLLEQYAKNMNYLEVNDNTIKKIIYNSP 126
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+F K+NKFS + +++ L EYI+ K ++ +++
Sbjct: 127 IFQ-KNNKFSKERYLNYLTSINSTNHEYINIIKKKINTENLIHTISKSNFILKKEEKNII 185
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+ + R + ++ + +N +F+K +DN+ PE +I+++ +
Sbjct: 186 KLLSQKRIIKKAIVKIDPSIYKKNITNQEAQIYFKKNQDNFYIPEKFKINFVELKTDNFK 245
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF-----IQ 298
E N E+ Y +N +Y + E R + N+++A L + +
Sbjct: 246 IHCE--NKEIYDWYIRNITQYSTKEKRRYSIIQVKNKQQAISILSRLHNTPEDFSKIAQE 303
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+ + S D +G S + IPD +L KK + VI ++I ++ +
Sbjct: 304 QSTDPISSKKDGDIGWISIDLIPDE---IKHANLNKKNQISDVIPFHNEFLIVKLNETQI 360
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
EV I Q++ K+ + E ++ L E +E + +
Sbjct: 361 GTQKKIYEVFDSIKKQIKQKKSLDLYNELKNKISNNLKNDPGKIERILKENNIL--IQET 418
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH--TVALPDGSYMWVQIKESIPARD 476
D+ K K + K+ + + + D K + L ++IK+
Sbjct: 419 DWFDKKSIPKVLNIPILKQFIFNKKLFQKDTTVKPQFHFIVLKKNQSFLIKIKKFKNKEI 478
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ E V ++ K + +K +E K+ +++ + ++ K K I+R
Sbjct: 479 QHFENVKKNIIKKLRFIKAIKETKKKSEEIIYDLTQGRKKL---FKQSNLYFTDPEIISR 535
Query: 537 MDNENKFFGYDGISQVFSGPVE----MVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--F 590
D S VFS P + + ++++ + EK+K
Sbjct: 536 YDL------SAITSIVFSLPHPQKGKKIYTLYNDKNKNFIIISLEKVYNTNFSEKEKNVI 589
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ YL++ + + +S++ L+ + +
Sbjct: 590 LEYLSRHNTEIIFNSILKDLREKSIIK 616
>gi|153209250|ref|ZP_01947306.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|120575458|gb|EAX32082.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
Length = 522
Score = 143 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 83/496 (16%), Positives = 188/496 (37%), Gaps = 27/496 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ +
Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+++ S + G + A++ L ++ L NL+ L E +G + I
Sbjct: 61 FQRLQRAYSLQRGQTLVG--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F ++ KFS F L + +++ ++ V G +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ R Y+++++ + + ++ +++K++++++APE I+Y+L
Sbjct: 178 KNNYELINQARDFRYMIISSAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYF------SPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+++ +S+ E++ YE N+E + ++Q + + + ++
Sbjct: 238 EMILQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKE-------YIPDVSLADSIFSLAKKGDFTPVIH-GS 345
+ +L + FS+E P + A + + G+ + VI
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAANPKIVAAAFSDDVLQGGNNSDVIELKD 357
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
V+ V + +PS + + V I +Q++ A K ++ + G S++ I+
Sbjct: 358 GSLVVLRVKDHQPSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVESIA 417
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + V K + +A+ + D
Sbjct: 418 KANHLFWRNEKEVKRNNKSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSD---------V 468
Query: 466 VQIKESIPARDRKLEE 481
VQ+ PA + + E
Sbjct: 469 VQLTAIKPANFKNITE 484
Score = 93.0 bits (228), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/266 (16%), Positives = 95/266 (35%), Gaps = 20/266 (7%)
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAG 422
F +VK I + K + + + +L TS++ +R+ + L G
Sbjct: 264 FNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYTNPTSLEPAARQLNLKINTTLLFSREG 323
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKD--DPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+ I +++ F D + + L DGS + +++K+ P+ L+
Sbjct: 324 EKEG------IAANPKIVAAAFSDDVLQGGNNSDVIELKDGSLVVLRVKDHQPSHVLPLK 377
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
V ++ KT + S A ++ E EG++ I K ++ R +
Sbjct: 378 TVSLQIEHQLKTQLAQAKASLLAGEIQNEIH-EGRSVESIAKANHLFWRNEKEVKRNN-- 434
Query: 541 NKFFGYDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISY 593
K ++ FS P + + N V ++T K ++K+ +
Sbjct: 435 -KSIPAAVMASAFSIPLKKDHSMTTTVLNNGDSDVVQLTAIKPANFKNITEKQKNSLENL 493
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVH 619
L+ + + +S+ + ++
Sbjct: 494 LSTQLGNLEYQFYMQAARSRAKIKIN 519
>gi|88608708|ref|YP_506523.1| rotamase family protein [Neorickettsia sennetsu str. Miyayama]
gi|88600877|gb|ABD46345.1| rotamase family protein [Neorickettsia sennetsu str. Miyayama]
Length = 594
Score = 143 bits (358), Expect = 1e-31, Method: Composition-based stats.
Identities = 94/598 (15%), Positives = 210/598 (35%), Gaps = 39/598 (6%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+A + S S V SVGR+K+ F++ +K+ F + + + +G+ + +L
Sbjct: 34 NASITGSRSDVVASVGREKILVDDFVSEYKKHERYFQSMFDFRLTDTQLKDIGVGRIVLT 93
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
L+ ++Q + +GL D +I ++P+F ++ KF L R + E+EY
Sbjct: 94 TLIQDKVIEQLFKQMGLHIDTSIAIDKIKKNPVF-NENGKFDRAKLDDFLDRNDLTEREY 152
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
I + + + V G F L + F + + V ++ +P P+ +
Sbjct: 153 IRKVKREIGKDFVFGPFFNIQGEYGKLAELFYNFEYGLKEVSIAKVDKNALPTPPVPTES 212
Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
L ++E+ KD + + EY+ + IL EL +++ +K F
Sbjct: 213 ELVSFYEENKDKFFSDEYRAAACILISEDNV-------KPELVEVADEDVQKSFESLQLG 265
Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
+ + ++ + + +K+ + + S+ + ++P D
Sbjct: 266 KRYYINYVEFDSRDEAERMKRSISANPEFYANDLTRIEGSVKTDLPAFLPKNIQWDGNKW 325
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
L K I+ V K+ N++R K+ + +
Sbjct: 326 LLAKYMGKFYIYTVVKIVSVSPEE------------KEKNLNELRKFMRLNKLNQIVDEI 373
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
+ + LG I + L + D GK+V + +F
Sbjct: 374 RDKVHLGEDWKVIVGKYGGEIDYLTPMSRLSLDKDGKKVKVSEELLEQVFS-----SSEG 428
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
V ++ ++ P + +V + V + + + +L+ +
Sbjct: 429 AISEVITGKNEFILFRVTSVEPVAKQPFSKVRSKVMEALSKKRQMQVAL----ELLQKQQ 484
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571
+ G+ + L I + N + + I++VF E+ + +
Sbjct: 485 ERGEKTEKVA-------LYRPGIAKRKGLNYHYPDEFIAEVFQIDSGGT-TKVFESDVEF 536
Query: 572 VVFKVTNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
KV ++ + + + + L + + +L + Q+ V V+ +LI+ L
Sbjct: 537 FSGKVLGNRNPELDKSIVAEIEAKLREEIGFSMLSELTQAAMKQFKVKVNSDLIKDLL 594
>gi|225872709|ref|YP_002754166.1| peptidylprolyl cis-trans isomerase, putative [Acidobacterium
capsulatum ATCC 51196]
gi|225793467|gb|ACO33557.1| peptidylprolyl cis-trans isomerase, putative [Acidobacterium
capsulatum ATCC 51196]
Length = 660
Score = 142 bits (357), Expect = 1e-31, Method: Composition-based stats.
Identities = 89/670 (13%), Positives = 211/670 (31%), Gaps = 69/670 (10%)
Query: 1 MLEIIRKASRTW--VAKIFLVVLFVPFLIWGLSDAL-FSVSGSSTVVSVG---------- 47
M+ ++K +R V I + V V +I + S + ++G
Sbjct: 1 MIRFLQKDNRFVKAVFFIIISVACVTMVITLVPGIFDTQSSSGNVYATIGYGGPLGRFMP 60
Query: 48 -RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+ + + +Q + Q+ G + + ++ L+ +
Sbjct: 61 AQDTITMTE----VQQTAARMMQQQGLPDSM----MSFVIPQVGQGLIQQHVEMMEAHKL 112
Query: 107 GLEADHGRVWGEIARSPL----FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
GL A+ V + F + +++ +
Sbjct: 113 GLHANDEDVRHFLHTGMWGQVLFPNGKYIGDQAYAELISEHFNMTREKFESEVKNAIVED 172
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
+ + G + S + Q + Y VL++ + +P++A L +F++
Sbjct: 173 RLRSLVSGAVTVSPEQVKQYYLQQGLKINFQYAVLDSNALRQTINPTDAQLQTYFKQNAG 232
Query: 223 NYRA---PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
Y D ++++ E+Q Y ++++Y PE V ++
Sbjct: 233 RYAKAIPETRSIQYIAFQDSQIPGGAPQVTDAEIQQYYNAHQDQYKVPEEVKVRHILIQV 292
Query: 280 QKEADEAFQ--------------SLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIP 321
+ A A GK F +LA++ LG +
Sbjct: 293 PQGAPAATVAAAKTKAQSVLDQLKQANGKNFAELAKKYSDDPGSKDQGGELGWVKQGMTV 352
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
D G + ++ +G+ I V + + T + +V+ I + + K +
Sbjct: 353 PA--FDHAIFTMPVGQISDLVRTQYGFHIIQVEDKHTAHTEALSDVRAQILSTLTQQKEN 410
Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
+ ++L + A + + V +G + + +L+
Sbjct: 411 DAAASYAQQLAKEAAANGLQK-TAAAHHLSVTTSDSV------QQGANLPNLSDSSKLVT 463
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
F + VA + Q+ A + T + D++ + ++
Sbjct: 464 AAFQAKQGAAPQ--VASTGDGFAVFQVSNITAAHAPTFDAYKTQILSDYRDDQLPALLAR 521
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS-QVFSGPVEMV 560
K N+L E +K + K + A+++T+ + R D + + ++ +F+ +
Sbjct: 522 KTNEL-AERAKNLNDLSKAAKLMNATVMTSGLVGRTDQVPEVGELEQVAPSLFTLQPGQI 580
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQY-- 614
I G S VV ++T + E ++ L + + ++ L +Y
Sbjct: 581 -SKAINTGRSGVVAQITARQEPDAAEIAAHSEQTREQLLDQQRNQMFEVFLSNLLEKYQK 639
Query: 615 --SVTVHDNL 622
+ ++
Sbjct: 640 EGRIRINAKA 649
>gi|254796993|ref|YP_003081830.1| Rotamase family protein [Neorickettsia risticii str. Illinois]
gi|254590229|gb|ACT69591.1| Rotamase family protein [Neorickettsia risticii str. Illinois]
Length = 594
Score = 142 bits (356), Expect = 2e-31, Method: Composition-based stats.
Identities = 96/593 (16%), Positives = 208/593 (35%), Gaps = 39/593 (6%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
S S V SVGR+K+ F++ +K+ GF + + + +G+ + +L L+
Sbjct: 39 GSRSDVVASVGREKILVDDFVSEYKKHERYFQSMFGFGLTDTQLKDIGVGRIVLTTLIQD 98
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
++Q + +GL D +I ++P F ++ KF L R + E+EYI
Sbjct: 99 KVIEQLFKQMGLHIDTSIAIDKIKKNPAF-NENGKFDRAKLDDFLDRNDLTEREYIRKVK 157
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
+ + V G F L + F + R V +N +P + P+ + L +
Sbjct: 158 CEIGKDFVFGPFFNIQGEYVKLAELFYNFEYGLREVSITKVNKNALPILPVPTESELVSF 217
Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
+E+ KD + + EY+ YIL EL +++ +K F +
Sbjct: 218 YEENKDKFFSDEYRTAEYILISEDNV-------KPELVEIADEDVQKSFENLQLGKRYYI 270
Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
+ ++ + + +KK + + S+ + ++P D K
Sbjct: 271 NYVEFDSRDEAERMKKSISANPEFYANDLTRIEGSVKTDLPAFLPKNIQWDGNKWFLAKY 330
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
++ V K+ N++R K+ + + +
Sbjct: 331 MGKFYVYTVVKIVSVSPEE------------KEKNLNELRKFMRLNKLNQIVDEIRSEVH 378
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
G I + L V D +G++V + +F +
Sbjct: 379 SGEDWKAIVGKYGGEIDYLVPVCRLSLDKEGRKVKVSEELLEQVFSI-----GEGAIGET 433
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
++ ++ P + +V + V K + + A +L+ + + G+N
Sbjct: 434 ITTKNEFILFRVTSIEPVAKQPFNKVRSKVIKALSKKRQMQV----AFELLQKQQENGEN 489
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
+ L +I + + + + I++VF E+ + + KV
Sbjct: 490 TEKVA-------LYRPEIAKRKGLSYHYPDEFIAEVFQIDSGGT-TKVFESDVEFFSGKV 541
Query: 577 TNSKVGPVQEK--DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
++ + E + + L + + +L + Q+ V V+ +L++ L
Sbjct: 542 LGNRNPELDESIVAEIEAKLREEIGFSMLSELTQAAMKQFKVKVNSDLVKDLL 594
>gi|212212179|ref|YP_002303115.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
gi|212010589|gb|ACJ17970.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
Length = 522
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 84/496 (16%), Positives = 188/496 (37%), Gaps = 27/496 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ I + + W+A + L V+ + F++WG+ L S G + TV V +K+ +
Sbjct: 1 MLQNIHERVKGWIAGLILAVVSLSFVLWGVQYYLQSEGGKNKTVAKVNGEKISENELNVV 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+++ S + G + S A++ L ++ L NL+ L E +G + I
Sbjct: 61 FQRLQRAYSLQRGQTLVS--AKAEALKEEALQNLIMNHVLLDSAEKMGFNISPAEINQII 118
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
P F ++ KFS F L + +++ ++ V G +
Sbjct: 119 TVLPAFQ-ENGKFSPQRFQQFLYENSLTSAQFVAQLLQVFLIQQVEKGITGSAFVLPNEI 177
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ R Y++++ + + ++ +++K++++++APE I+Y+L
Sbjct: 178 KNNYELINQARDFRYMIISRAPFLKESKVTPEMIADYYQKHRESFKAPEKLSIAYLLLSP 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYF------SPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+++ +S+ E++ YE N+E + ++Q + + + ++
Sbjct: 238 EMIRQQVSVSDHEIKQYYESNREGKSFNQVKDQIKQSLLQQKINTLLTKKSDQLSTITYT 297
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEY-------IPDVSLADSIFSLAKKGDFTPVIH-GS 345
+ +L + FS+E P + A + + G+ + VI
Sbjct: 298 NPTSLEPAARQLNLKINTTLLFSREGEKEGIAVNPKIVAAAFSDDVLQGGNNSDVIELKD 357
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
V+ V + + S + + V I +Q++ A K ++ + G S++ I+
Sbjct: 358 GSLVVLRVKDHQLSHVLPLKTVSLQIEHQLKTQLAQAKASLLAGEIQNEIHEGRSVESIA 417
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + V K + +A+ L +G
Sbjct: 418 KANHLFWRNEKEVKRNNKSIPAAVMASAFSIPLKKDHSMTTTV---------LNNGDSAV 468
Query: 466 VQIKESIPARDRKLEE 481
VQ+ PA + + E
Sbjct: 469 VQLTAIKPANFKNITE 484
Score = 91.5 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 44/311 (14%), Positives = 99/311 (31%), Gaps = 18/311 (5%)
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+E + L + S + + + + SF +VK I +
Sbjct: 219 RESFKAPEKLSIAYLLLSPEMIRQQVSVSDHEIKQYYESNREGK--SFNQVKDQIKQSLL 276
Query: 377 ITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
K + + + +L TS++ +R+ + L G+ I
Sbjct: 277 QQKINTLLTKKSDQLSTITYTNPTSLEPAARQLNLKINTTLLFSREGEKEGIAVNPKI-- 334
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ + L DGS + +++K+ + L+ V ++ KT
Sbjct: 335 --VAAAFSDDVLQGGNNSDVIELKDGSLVVLRVKDHQLSHVLPLKTVSLQIEHQLKTQLA 392
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
+ S A ++ E EG++ I K ++ R + K ++ FS
Sbjct: 393 QAKASLLAGEIQNEIH-EGRSVESIAKANHLFWRNEKEVKRNN---KSIPAAVMASAFSI 448
Query: 556 P--VEMVKCFPIENGLSYVVFKVTNSKVGP-----VQEKDKFISYLTQMMNKDLLDSVIA 608
P + + N V ++T K ++K+ + L+ +
Sbjct: 449 PLKKDHSMTTTVLNNGDSAVVQLTAIKPANFKNITEKQKNSLENLLSTQWGNLEYQFYMQ 508
Query: 609 YLKSQYSVTVH 619
+S+ + ++
Sbjct: 509 AARSRAKIKIN 519
>gi|320107420|ref|YP_004183010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
saanensis SP1PR4]
gi|319925941|gb|ADV83016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
saanensis SP1PR4]
Length = 661
Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats.
Identities = 87/660 (13%), Positives = 196/660 (29%), Gaps = 62/660 (9%)
Query: 1 MLEIIR--KASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSV---------- 46
M+ +++ + + + + + +++ + +G SV
Sbjct: 1 MIRLLQKDNRAVKVLFAVIIGAAILSMIVYLVPGLYEGVTNNGDGVYASVHEPGLMGRIF 60
Query: 47 -GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
+++ + + Q+ G+ L+++ ++ A DQ
Sbjct: 61 GDTEQITTQE----VSRLAQSLQQRSGYPA----FYLPLLERQAQQMKIAWAIEDQEASR 112
Query: 106 IGLEADHGRVWGEIARSPLFHG--KDNKF-SHDVFVSRLAREGINEK--EYIDHYTKMLS 160
+GL V E+ + L KF D + + ++ + +
Sbjct: 113 LGLLVSDEDVSAELHQGQLGQILFPGGKFIGQDQYKQFVQNAAGVPTTADFEKEIKEDME 172
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
R + G+ ++ + A DY +++ V +++ L ++F
Sbjct: 173 RRRLRQFVTAGVNVNDNAVRSAYLLSGTKVKFDYAMISPEDVKKNVTSTDSELQKYFNDN 232
Query: 221 KDNYRAPEYKRISYILF---DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
K Y + K ++S+ E+Q+ Y ++ ++Y E V ++
Sbjct: 233 KARYAKAVAEARKVTYVAVAADSLPGGKPQVSDAEVQSYYSQHADQYKVEEQVRVRHILI 292
Query: 278 PNQK------------EADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIP 321
+A + ++ G F LA+ LG
Sbjct: 293 SVPPGADAKVDAAAKTKAQDLLTKIRAGGNFADLAKANSDDPGSKGTGGELGWVKSNGQM 352
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
+ + K G + ++ FGY I + + + EV I + KA+
Sbjct: 353 VPAFQTAA-MALKAGQTSDLVKTQFGYHIIQATERQDAHVKPLTEVASQIRPMLEQQKAA 411
Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
+ L A + + D+ +D VA Q F
Sbjct: 412 AAEQSFVTALSNEAAKQGLDKAAAAHH----LTAQTTDYIAQDGVVNGVADSSQLLQAAF 467
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
D P + Q+ + PA + + V D+ + + +
Sbjct: 468 AAKKGDAPKAV-----ATGEGMAIFQVVDIQPAHAPTFDLWKSHVADDYAAEQVPTMMQA 522
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK-FFGYDGISQVFSGPVEMV 560
K +L E +K+ + + + + T++ + R N + G S F+ V
Sbjct: 523 KLTKL-SERAKQLNDLKKAAVEMNIPVKTSDLVGRDGNVPELGAMSGGASVAFTLAKGAV 581
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ V+ V + F + L + ++ + L QY
Sbjct: 582 SAPIDASRSGAVLQVVDKQEPTTEDIAKNFDKTKNDLLESKRNEVFALYMGTLMDQYKAK 641
>gi|289811437|ref|ZP_06542066.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 408
Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats.
Identities = 80/420 (19%), Positives = 175/420 (41%), Gaps = 23/420 (5%)
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
++++ K + PE R+SYI D + +S+ ++QA Y+++ +++ PE +
Sbjct: 2 YYDQNKVRFMTPEQFRVSYIKLDAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSII 59
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFS 331
+ +A +L KG+ F LA+E+ + +G + L ++
Sbjct: 60 QTKTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATV-PELKNAG-- 116
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
L +KG + VI S G+++A + +I+P+ EV+ DIA +++ KA + +++
Sbjct: 117 LKEKGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKV 176
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR--VFGKDDP 449
+ + + ++ E++ + + +D +E+ P + + V P
Sbjct: 177 SDAASN--DNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTP 234
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
+ + V++ E P + L EV V K K ++ A +L++E
Sbjct: 235 GPNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVE 294
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG- 568
K GK + K G S ++R + + S P + + + N
Sbjct: 295 L-KAGKGAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDM 348
Query: 569 -LSYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ V+ K G P +K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 349 QGNVVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 408
>gi|226329062|ref|ZP_03804580.1| hypothetical protein PROPEN_02965 [Proteus penneri ATCC 35198]
gi|225202248|gb|EEG84602.1| hypothetical protein PROPEN_02965 [Proteus penneri ATCC 35198]
Length = 276
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 53/246 (21%), Positives = 104/246 (42%), Gaps = 5/246 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ IR + KI L V+ + F++ G+ LFS SG + V K+ S ++
Sbjct: 1 MMDNIRSTANNPFIKILLAVIILSFVLTGVGGYLFS-SGVNDAAEVNGYKISRSQLEQAY 59
Query: 61 KQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+Q + Q +G S + ++ LD L++ A LDQF + +G+ A ++
Sbjct: 60 QQRRAQLQQDMGENFAALASSEEGQKLIRQQALDLLINQALLDQFAQKLGISAGDQQIRD 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + KF + +V L I+ + + + L + G +
Sbjct: 120 AIFALPYFQT-NGKFDNKKYVDLLKGNNIDADAFAEGIRQNLINQQLKFSIQGTDFALDS 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + ++R+V L+ + S+ + ++E+ + APE +ISYI
Sbjct: 179 EVKEFAGLMLQSRNVRLASLDIQPFLEKETASDEEVKAFYEQNNQMFIAPEQFKISYIQL 238
Query: 238 DVHEKE 243
+ ++
Sbjct: 239 NAQKRF 244
>gi|322419880|ref|YP_004199103.1| hypothetical protein GM18_2369 [Geobacter sp. M18]
gi|320126267|gb|ADW13827.1| hypothetical protein GM18_2369 [Geobacter sp. M18]
Length = 525
Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 81/524 (15%), Positives = 174/524 (33%), Gaps = 10/524 (1%)
Query: 1 MLEIIRKASRTWVAKIF-----LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
ML I+RK ++ + KI L + FL+W G S +V K+
Sbjct: 1 MLGIMRKYKQSIIIKIVFVVIVLSFIGTIFLVW-GKGGSDGQGGKSYAATVNGTKISLDE 59
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
F S+ + G+ Q G + E + +G+ K +++LV + + +GL+A V
Sbjct: 60 FQKSYYRTRGLYEQIYGRSLTPEMEKQMGIKKLTINSLVDNVLIHAEAKKMGLKASKEEV 119
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EIA+ P F K+ F ++ L I K++ + + + +
Sbjct: 120 AAEIAKIPAFQ-KNGAFDFGIYQQTLKANRITPKDFEESQEQEMLLQKARNKVKDAAAVT 178
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + A + + + Y+ + V ++ LT + + +++ ++ PE ++Y
Sbjct: 179 DAEVKAAFKKQKDKIDLAYVSFSPADVKGSIKLTDQELTSYLQDHQNEFKTPEQVSVAYA 238
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
L + K+ ++ +E+Q Y+KN ++Y V + + K+ +
Sbjct: 239 LVSPAQFAAKVSVTPEEVQTYYQKNIDRYQGKGGILPFAEVKEQASADAQKQKGAKEAYE 298
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
A + ++ +DI + S + + + G+ V
Sbjct: 299 KAADAVNKFRASADIDAAAASLGSKVEKTPLFSSKAPAAGLVGENEVVARALALKQGELG 358
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
++ + + +V + E + L E + ++
Sbjct: 359 GPVETAKGIYLVKVLDKKPAAVPPLSQIRGAVEAKAVEVKAADLAKKKAEEALQQLAKGA 418
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
G G I +L+ F + P + V++K
Sbjct: 419 AAKETGSFGYAATGAV-PTIGTSPELMEAAFALNAPNEAAKQPFKVGDRWYAVKLKSRTE 477
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
A L + +K K E + L + +
Sbjct: 478 APLTDLAKDSGTIKAALLPKKQQEALDKWVKGLRDKAKIDINPL 521
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 56/485 (11%), Positives = 122/485 (25%), Gaps = 28/485 (5%)
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ + G + + N VD ++++ S
Sbjct: 57 LDEFQKSYYRTRGLYEQIYGRSLTPEMEKQMGIKKLTINSLVDNVLIHAEAKKMGLKASK 116
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ K + + Y + + + Q +
Sbjct: 117 EEVAAEIAKIPAFQKNGAFDFGIYQQTLKANRITPKDFEESQEQEMLLQKARNKVKDAAA 176
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQ------LAEEQGKSLSDISLGSFSKEYIPDVS 324
+ V K+ + L +++ S F V+
Sbjct: 177 VTDAEVKAAFKKQKDKIDLAYVSFSPADVKGSIKLTDQELTSYLQDHQNEFKTPEQVSVA 236
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
A + Y + F EVK+ + + K +++
Sbjct: 237 YALVSPAQFAAKVSVTPEEVQTYYQKNIDRYQGKGGILPFAEVKEQASADAQKQKGAKEA 296
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
E +D + PL K AA E +
Sbjct: 297 YEKAADAVNKFRASADIDAAAASLGSKVEKTPLFS-------SKAPAAGLVGENEVVARA 349
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
V G Y+ V++ + PA L ++ V+ VK A+ KA
Sbjct: 350 LALKQGELGGPVETAKGIYL-VKVLDKKPAAVPPLSQIRGAVEAKAVEVKAADLAKKKAE 408
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCF 563
+ + + +K K G + + + F+
Sbjct: 409 EALQQLAKG-----AAAKETG----SFGYAATGAVPTIGTSPELMEAAFALNAPNEAAKQ 459
Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
P + G + K+ + P+ + K + L ++ LD + L+ + + ++
Sbjct: 460 PFKVGDRWYAVKLKSRTEAPLTDLAKDSGTIKAALLPKKQQEALDKWVKGLRDKAKIDIN 519
Query: 620 DNLIQ 624
++Q
Sbjct: 520 PLVLQ 524
>gi|114321433|ref|YP_743116.1| hypothetical protein Mlg_2284 [Alkalilimnicola ehrlichii MLHE-1]
gi|114227827|gb|ABI57626.1| hypothetical protein Mlg_2284 [Alkalilimnicola ehrlichii MLHE-1]
Length = 484
Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 83/514 (16%), Positives = 170/514 (33%), Gaps = 38/514 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR A + WVA ++V+ +PF++ G F+ V V ++
Sbjct: 1 MLEAIRSAVKGWVAWAVVIVISLPFIVVGGYSY-FAGDDGRVVAEVEGVEITREQVAERA 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q+ + + G + + L ++ D L+ A L + D L V I
Sbjct: 60 RQQQRQLEEFFG-DLGAAGVDESTLRREARDGLIEEALLHVLVTDGNLRVGDRAVAQRIR 118
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ +FH + FS + + L+ + +Y + + L G +
Sbjct: 119 QQDIFH-QGGTFSMERYQQLLSANRLTPDQYEEMVRRDLLVEQFQRAVTGSALVRDWDTA 177
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + R + Y+V++ P S+A + +E+ + Y AP R+ YI
Sbjct: 178 RLAALDRQQRDIHYLVVSADEAPD--AVSDAAVQAHYEENAERYTAPRQVRLEYIELHQD 235
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
E EL + + D ++L+
Sbjct: 236 ELAPDDSTRFFELTEDAANVAYE--------------------DPDSLQSAADLLGVELS 275
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS-FGYVIAHVSNIKPS 359
+ G + + + + + +D + + G + +I ++ V +++ +
Sbjct: 276 YSDWVPEDGSAEGLWGRPEVVEAAFSD---DVLEFGYNSELIELGSGHALLLRVDDVREA 332
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ EV +I ++ + + + + LE +A G M E++ RE + +D
Sbjct: 333 EPLGLDEVADEIRRELAREQGRLQARNLGELLEREIAAGAEMAELAEREGLEVRSAEGLD 392
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
A FR+ D ++ G Y VQ+
Sbjct: 393 RGTL-----SDAVPTQVVDRAFRLPRPVDGQPSVGGTSVQGGDYAVVQVVAVTDGDTDLG 447
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+E W+ S+ L+ +E
Sbjct: 448 DEERE----HWRADLRQVFSQSEWQALMAGLREE 477
Score = 97.2 bits (239), Expect = 7e-18, Method: Composition-based stats.
Identities = 32/273 (11%), Positives = 98/273 (35%), Gaps = 12/273 (4%)
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEISRREKIVSI 413
+ ++V+ + + A + ++ E+ D + ++ +
Sbjct: 213 EENAERYTAPRQVRLEYIELHQDELAPDDSTRFFELTEDAANVAYEDPDSLQSAADLLGV 272
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+L D+ +D + + P + F + + + L G + +++ +
Sbjct: 273 ELSYSDWVPEDGSAEGLWGRPEVVEAAFSDDVLEFGYN-SELIELGSGHALLLRVDDVRE 331
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
A L+EV +++++ + + + +L+ G ++ + G + +
Sbjct: 332 AEPLGLDEVADEIRRELAREQGRLQARNLG-ELLEREIAAGAEMAELAEREGLEVRSAEG 390
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSYVVFKVTNSKVGP----VQ 585
++R + + + F P + + G Y V +V G +
Sbjct: 391 LDR-GTLSDAVPTQVVDRAFRLPRPVDGQPSVGGTSVQGGDYAVVQVVAVTDGDTDLGDE 449
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
E++ + + L Q+ ++ +++A L+ + V +
Sbjct: 450 EREHWRADLRQVFSQSEWQALMAGLREEMDVKL 482
>gi|238021983|ref|ZP_04602409.1| hypothetical protein GCWU000324_01888 [Kingella oralis ATCC 51147]
gi|237866597|gb|EEP67639.1| hypothetical protein GCWU000324_01888 [Kingella oralis ATCC 51147]
Length = 610
Score = 138 bits (346), Expect = 3e-30, Method: Composition-based stats.
Identities = 97/631 (15%), Positives = 208/631 (32%), Gaps = 48/631 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + K I L ++ V F+ +G L +S + +V VG Q + + +
Sbjct: 1 MFHSVNKFRTP--VTILLSLIAVSFMGYGFVS-LQGISRDNYIVKVGDQIITRYALDQAV 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E A + + L+ A L + + +G+ ++ +
Sbjct: 58 QNT--------------EAAGEPASREAVFQTLLQRAYLLEGAKQLGIVVSDEQIKQIVV 103
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P FH KF +F + L +E+ ++ + LS ++ + S+
Sbjct: 104 DNPQFHDTSGKFDPKLFQAYLTNTRQSEESFMQAQRENLSVAALLQ-TLNSNAVSDFQAQ 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q RS VLN + +A L +++E K +Y P+ + YI+
Sbjct: 163 QVINAVLAPRSTRAYVLNPQAFADKVKADDAALKKYYEANKKDYLLPQGAKFEYIVLSPK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ K +S+ E++A Y +K + + P +A ++ + +K A
Sbjct: 223 DIAGKQSVSDAEIEAAYNASKGSLKPKRRVSHILIEAPKSADAATREKARAEAEKIAAEA 282
Query: 301 EEQG---------------KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
+ + + LG +++ + KG+ + V+
Sbjct: 283 KAHPEQFAEIAKRASQDVGSAANGGDLGEIAQDGKIGSKALEDAAFALNKGEVSGVVESD 342
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF-LALGTSMDEI 404
FGY + V++I VS K I + ++ KA ++ + + L E + +
Sbjct: 343 FGYHVLRVTDIAD---VSLAAQKDSIRSSLQAKKAQQEYNKQREALSEAVFSARDKLQPA 399
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+++ + ++ + G E LL G + DG
Sbjct: 400 AQQFGLTVQTQN--EWTTRANAGSLKIPAAVAEALLA---GDVFSKKLNSAAINVDGETW 454
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
+V+ E+ E+ V + +K ++ A L E +
Sbjct: 455 FVRPTETRTESTETFEQAKPRVAERFKLAESRRLALEHAKNLQKELAAGNNPAVAWS--- 511
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
++ + N + + + + + V + + VG
Sbjct: 512 --TVEQVVPLQVRANLSDDAYFAFMQAIPKNGKPAYAVLDMPAAPQLVEVQ-SIQTVGNP 568
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
Q L Q M ++++ + I L +
Sbjct: 569 QALANAKQTLAQEMGENMIQNYIESLAASIK 599
>gi|299138720|ref|ZP_07031898.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
MP5ACTX8]
gi|298599356|gb|EFI55516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
MP5ACTX8]
Length = 656
Score = 136 bits (342), Expect = 8e-30, Method: Composition-based stats.
Identities = 79/650 (12%), Positives = 200/650 (30%), Gaps = 48/650 (7%)
Query: 1 MLEIIR--KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVG-----RQKV 51
M+ I++ + + + + +I + + + ++ ++ + V
Sbjct: 1 MIRILQQDNRLTKAIFALIIGAAIITMVITLVPGIFDNGANNNPSVFATIHTPGIFGKIV 60
Query: 52 PFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
S + + + Q + + L ++ V L + +GL+
Sbjct: 61 GESQQVQMADVQRQTMQQIQQQHLP--EQYAPLLAGRVGQQQVERKVLALEADRLGLQVS 118
Query: 112 HGRVWGEIAR--SPLFHGKDNKF-SHDVFVSRLAR-EGINEKEYIDHYTKMLSRTDVVGM 167
+ + + + KF D + + + + I+ E+ L + +
Sbjct: 119 DEDLRSFMQKGTLSQYIFPGGKFIGTDQYTNFVQQYFQISVPEFEAEVKSDLELQRLQSL 178
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA- 226
G+ S+ + DY V+ + +PS+A L +F+++ Y
Sbjct: 179 VTAGVTVSDAAVRADYMQQGTKVKFDYAVIAASDIKKTINPSDADLQAFFKQFAARYATA 238
Query: 227 --PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-------- 276
K + + K ++++ ++QA Y + ++Y PE ++
Sbjct: 239 IPETRKLELFSFDASNIPGGKPQVNDADVQAYYNAHLDQYKLPEQVKTRHILITVAKGAD 298
Query: 277 ----FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSI 329
+ +A++ + ++ G F LA++ G + +
Sbjct: 299 AKTDAAAKAKAEDILKQIRAGGNFADLAKKNSDDPGSKDQGGELPLMPTSGFVPEYSKAA 358
Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
G + ++ FGY I + + T + E K I ++ KA
Sbjct: 359 -MALNPGQTSDLVRSQFGYHIIQTEQKEAAHTKTLAETKDTIVPLLQQQKAGAAELNFAN 417
Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
+L A M + + + + + G + + + + +
Sbjct: 418 QLA-AEAKKNGMQKTADAHSLHLVTTDYIGHDGVIASLADSSNVLTQAFGVA-------- 468
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
A Y Q+ + A + + D++ K E ++S+ +L +
Sbjct: 469 KGAAPATASTGEGYAVFQVDDIKAAHAPDFADYKPHILDDYREQKAPELLNSQLIKL-AD 527
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENG 568
+K + + + + T++ + R S VFS P + E
Sbjct: 528 RAKVLNDLKKAAAEMNVPVKTSDLVGRDAQVPDLGALTGPASVVFSLPKGGISGPINEGP 587
Query: 569 LSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYS 615
V+ + L + +++ + + L +Y
Sbjct: 588 NGSVIQLADKQEPTADDIAKNLPTSREKLLNVKREEIFNVFVGSLMDKYE 637
>gi|183179758|ref|ZP_02957969.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MZO-3]
gi|183013169|gb|EDT88469.1| peptidyl-prolyl cis-trans isomerase D [Vibrio cholerae MZO-3]
Length = 157
Score = 136 bits (340), Expect = 1e-29, Method: Composition-based stats.
Identities = 29/153 (18%), Positives = 61/153 (39%), Gaps = 5/153 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R+ + KI L ++ + F+ G+ + L S + VG ++ F ++
Sbjct: 1 MMDRLREGVNSIAVKIILGLIILSFIFAGVGNYLISGGN-NAAAKVGNAEISRGDFEQAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ E + ++G + ++ A K +LD +V+ L+Q +GL +V
Sbjct: 60 QNERNRMQAQLGDYFSNLLADPAYVASFRKSVLDRMVNDLLLEQHAASLGLRLSDEQVRQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
I P F + F + + E
Sbjct: 120 LILEIPQFQSQG-VFDSAAYQRLCVAQLTPEMY 151
>gi|146329199|ref|YP_001209808.1| peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A]
gi|146232669|gb|ABQ13647.1| peptidylprolyl cis-trans isomerase [Dichelobacter nodosus VCS1703A]
Length = 621
Score = 135 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 77/632 (12%), Positives = 191/632 (30%), Gaps = 44/632 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + + + + V + + G+ L +TV V + F
Sbjct: 21 MADAVSEKKGNRFTYALVGVAGLGVVFIGVP-ILTPKYQPATVAQVNGISIEQHDFNRMV 79
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ S + + L +++ L Q G A ++ +
Sbjct: 80 SHLQQRLTN----------IPSKEVRELALQQIINETLLRQHALQSGYLASRQDLYTAVK 129
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++ + L + I + Y L+ + + + + L +
Sbjct: 130 AQFG--------DNETYEKWLKSQRITAQNYEAGLYHDLTVSQYYQLLGKTVFIGDELQN 181
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
R + + R V L A + VL ++E+ + Y + E + Y++ D
Sbjct: 182 AFYRLFSQQRDVTLFTLPLAEKIASVKTTPEVLRAYYEENRARYMSDETVSVRYVILDAA 241
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
EIS EL A + ++ A Q + +
Sbjct: 242 HLAGNAEISEQELAAARAAMVNDDRRDGQYIIFDDKAVAEQTAAALAQGERSFADIVAAI 301
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
E++ + K P + +FSL K GD + + +G ++ + + +
Sbjct: 302 EKKELAGQSGLFDLHKKGEGPSEKADEVLFSLQKTGDTSALFDTEYGAMLVQLGKVVAAD 361
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+ +++ K E+ + + G ++D+I+ K L +
Sbjct: 362 LDE-----AALRSKLLAEKNQERYTHLANEAFDTVVRGGTIDDIAALAKSAPQQLSQITA 416
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+ Q + + L + ++ ++ + ++ E
Sbjct: 417 HTAQPD----WLTKAELQNVLFGADAMATGKLGTPIELDETRSLFYEVDARVLPKELPYE 472
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK-NFRDIGKNLGASLLTTNQINRMDN 539
+V T V +D++T + + + A+ L + + + +G++ A +
Sbjct: 473 QVETQVTRDYRTDEAKKALRITADTLATQLVAGDDLDTQTLGESAKAVYQKIGEFK---- 528
Query: 540 ENKFFGYDGISQVFS--GPVEMVKCFPIENGLSYVVFKVT-----NSKVGPVQEKDKFIS 592
+ +F VV ++ + P + D F
Sbjct: 529 ----VPEKMDNAIFQQVMQQHEKVAQLEATNGDLVVSRIDAVYDGSVDAVPKEAVDLFNQ 584
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ D + +L+ + ++ + +L++
Sbjct: 585 QMVLTYQTDAMRGYTDWLRQRANIKTNQSLLK 616
>gi|108758423|ref|YP_630863.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
gi|108462303|gb|ABF87488.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
Length = 524
Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats.
Identities = 80/515 (15%), Positives = 177/515 (34%), Gaps = 44/515 (8%)
Query: 17 FLVVLFVPFLI---WGLSDALFSVSGSST----VVSVGRQKVPFSSFINSWKQELGMISQ 69
L ++ + + +G + F +G +T V SV +++P F +W Q++ +
Sbjct: 15 LLFIIGIAVVFTLQFGPGSSGFGATGGATAPGSVASVNGKEIPLRDFAAAWAQQMSFLRS 74
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G V AR G+ ++LD LV+ L Q E G+ A + I ++ F KD
Sbjct: 75 Q-GSPVPESLARQFGMHNQVLDRLVNTELLAQAAERHGIAASDDELRKLIHQNTDFQ-KD 132
Query: 130 NKFSHDVFVSRLAREGIN-EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY-F 187
+F + + L +++ + L+ ++ + G S+ +
Sbjct: 133 GQFDFERYQQVLRDFYRKSPQDFEAELRRQLAAQKMMDVVRGNAVVSDDEVRARFEKEGN 192
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
+ + V L + + P+ A L +W + ++ + +
Sbjct: 193 QAKVVFARFLPAMYADKVPSPTAAQLAEWKKAHEKDIKEYFEANRFVYQ----------- 241
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
Q E + ++ ++A + ++ GK F Q+A + +
Sbjct: 242 ------QPERIRARQVLVKLPPEATADQKKAALEKAQALRKEIEGGKDFAQVARDSSEDP 295
Query: 308 S----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
LG + + +LAD+ K+G+ T + FG + V + +
Sbjct: 296 GSKARGGDLGWVERGSW-EPALADAA-FALKQGEVTQPVETKFGVHLVKVDEKQAAQDKK 353
Query: 364 FQEVKKDI---------ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
++V+ +I A Q +A + + + ++ +
Sbjct: 354 LEDVQDEIATTLYKQDRAKQQARAEAEKALASAKAGQDLKTLFPPEKEQPALLRFETETR 413
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
V+ +G+ V + +L+ F P D L +G ++ Q+ E
Sbjct: 414 PEAVETDSFTAEGEAVPHLGPAPELVKAAFAVSAPQPLDSVFPLGEG-FVVAQVVERQKP 472
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
++ +++ + K E S L +
Sbjct: 473 DAEGFDKRKEELRAQARQAKQIELTESFLKALREQ 507
Score = 74.5 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/326 (11%), Positives = 98/326 (30%), Gaps = 26/326 (7%)
Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
++ + + + + + + + ++ ++
Sbjct: 203 PAMYADKVPSPTAAQLAEWKKAHEKDIKEYFEANRFVYQQPERIRARQVLVKLPPEATAD 262
Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ K ++ + + ++ + S D G + + P F
Sbjct: 263 QKKAALEKAQALRKEIEGGKDFAQVARDSSEDPGSKARGGDLGWVERGSWEPALADAAFA 322
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW-KTVKTAEEVSS 501
+ V G ++ V++ E A+D+KLE+V ++ K + ++ +
Sbjct: 323 LKQ----GEVTQPVETKFGVHL-VKVDEKQAAQDKKLEDVQDEIATTLYKQDRAKQQARA 377
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGA-------------SLLTTNQINRMDNENKFFGY-- 546
+A + + K G++ + + + T+ G
Sbjct: 378 EAEKALASA-KAGQDLKTLFPPEKEQPALLRFETETRPEAVETDSFTAEGEAVPHLGPAP 436
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFISYLTQMMNKDL 602
+ + F+ G +VV +V + + K++ + Q +L
Sbjct: 437 ELVKAAFAVSAPQPLDSVFPLGEGFVVAQVVERQKPDAEGFDKRKEELRAQARQAKQIEL 496
Query: 603 LDSVIAYLKSQYSVTVHDNLIQRYLD 628
+S + L+ Q SV + I +
Sbjct: 497 TESFLKALREQGSVVTNTAAIDSVVG 522
>gi|297519828|ref|ZP_06938214.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
OP50]
Length = 141
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 5/141 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI ++ V F++ G+S L + V Q++ F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGN-NYAAKVNDQEISRGQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLDQYARELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFV 138
I +P F D KF + +
Sbjct: 120 AIFATPAFQV-DGKFDNSRYN 139
>gi|268316323|ref|YP_003290042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
DSM 4252]
gi|262333857|gb|ACY47654.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
DSM 4252]
Length = 696
Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats.
Identities = 85/712 (11%), Positives = 196/712 (27%), Gaps = 109/712 (15%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+ +R+ + + I ++ + +++ T+ V + + ++ + +
Sbjct: 4 MNKLRENT-GVILWILVISFGIIWVLQDSGAFDVVGRTGDTIAEVNGDPISYQEYVRAVE 62
Query: 62 QELGMISQKIGFVVNSER-----------ARSVGLDKKILDNL----------------- 93
++ Q+ G + L ++ ++ L
Sbjct: 63 AQMQAYQQQTGEAPTPQMSDLIREQVFNALVEERLRQQAMERLGITVTDDEVVQMVLGDN 122
Query: 94 ---------------VSGATLDQFIED----------------------------IGLEA 110
V+ A L FI++ +
Sbjct: 123 PHPIIKAYFGDENGNVNRALLQNFIDNPAAREDWIRLEEYLRAERARQKLEQLLLATVHV 182
Query: 111 DHGRVWGEIARSPLFHGKDN---KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
V E R L +++ S E + Y +H + +
Sbjct: 183 SDQEVEEEYRRRTLRADARYVALRYAEVPDDSVTVTESDLRRYYNEHRDDFKRKRTYRVV 242
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+V + + N + S T F + + A
Sbjct: 243 YVALPKNPTAEDTLQVLEELNRLKERFAQTENDSLFLARYASERPFTDAFFRRDELDPAL 302
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT-------VEQLVFPNQ 280
++ + E+ + +
Sbjct: 303 GDVVFDDPQPGKVVGPVVAGGLAHLVKIRAVRPSEETVIRARHILIRAPEGDAEARRQAR 362
Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKG 336
+EA E + L++G F LA E LG F + + + + A G
Sbjct: 363 QEALELKRQLEQGADFATLAREHSDDPGSARRGGDLGWFGRGRMVEP--FEEAAFSAPIG 420
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
I FGY + V+ + + + + E++++ EE
Sbjct: 421 RVVGPIETRFGYHLIEVTGRSNVEVQIADLAMRLAPSLATLNRIQERMEDLAYYAEE--- 477
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
+ ++R + ++ + + + I +L + G D+ V
Sbjct: 478 -SGDFEGEAQRMGLQVQEMR------VEEDQQFLPGIGQSRAILNFLAGADE--GDVSQV 528
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
D ++ +Q+ E IP R EEV +++ K E ++ + + +
Sbjct: 529 IELDDRFIVLQLVEVIPEGYRSFEEVREEIRPRVLLEKKKEVQVARMRRALQQ-----HG 583
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVF 574
F + + LG ++ T Q++ G + I VF ++VV
Sbjct: 584 FDGLAEALGTTVQTVTQLSYNQTLIPGLGREPRFIGTVFGLQEGTTSGVVEGENAAFVVQ 643
Query: 575 KVTNSKVGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ P Q +++ L + +L +A L+ Q + + +
Sbjct: 644 LTKLYEPPPLGEQMREQIRQQLLNQRRQQVLTQWLAALREQADIKDYRRRFE 695
>gi|213521163|gb|ACJ50520.1| peptidyl-prolyl cis-trans isomerase D [Pseudomonas fluorescens]
Length = 279
Score = 133 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 47/273 (17%), Positives = 102/273 (37%), Gaps = 4/273 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL-FSVSGSSTVVSVGRQKVPFSSFINS 59
ML+ IR S+ W+AK + ++ G+ S + V V +++ + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIVALMAFTGIEAIFQASGNNKQDVAKVNGEEITQTELSQA 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ + Q++G ++ L L L+ L Q D + I
Sbjct: 61 VDMQRRQLMQQLGKDFDASLLDEKLLRDAALKGLIDRKLLLQGAADSKFGFSEAALDQVI 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
++P F D KF+ + F + + G + ++ T+ + V G ++ +
Sbjct: 121 LQTPEFQV-DGKFNAERFDQVVRQLGYSRLQFRQMLTQEMLIGQVRAGIAGSGFVTDAEV 179
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
R ++ D+ +N + PA ++ + +++++ + P+ I Y+
Sbjct: 180 LAFARLE--KQTRDFATVNIKADPAAVKLTDDEVKAYYDQHAKEFMTPDQVVIDYLELKK 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
++ + +DELQA YEK
Sbjct: 238 SSFFDQVTVKDDELQAAYEKETANLAEQRRAAH 270
>gi|118581468|ref|YP_902718.1| hypothetical protein Ppro_3065 [Pelobacter propionicus DSM 2379]
gi|118504178|gb|ABL00661.1| conserved hypothetical protein [Pelobacter propionicus DSM 2379]
Length = 527
Score = 131 bits (328), Expect = 3e-28, Method: Composition-based stats.
Identities = 100/534 (18%), Positives = 194/534 (36%), Gaps = 40/534 (7%)
Query: 1 MLEIIRKASRTWVAKIF-----LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
ML++IR+ ++ + K+ L + FL+W + S S + V R K+
Sbjct: 1 MLDLIRQKKQSIIIKVVFVVIVLSFIGTMFLVW-GKGSDGSGSSMAYAAKVNRHKISLEE 59
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
F N++++ + Q G + E +++GL K L++L+ A + + + +G+ A V
Sbjct: 60 FQNAYQRMRNIYQQIYGQSLTPEIEKTLGLKKAALNSLIDTALILKEAKKMGITASKDEV 119
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
G IA P+F KD FS D++ L I KE+ + + L + + S
Sbjct: 120 SGAIAAMPMFQ-KDGVFSFDLYQQLLKSNRITAKEFEEAQQRELILKKTRQAIINKVAVS 178
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ R + ++Y+ V P+ A L ++ +K +D +R E ISY+
Sbjct: 179 DQEALDLFRKENDRIELEYLSYGPADVMGEIRPTEAELKEFLQKNQDRFRTAEKAEISYV 238
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
L D + + ++ DE+Q Y+KN +++ + L ++ EA + +
Sbjct: 239 LIDPASQAARQSLTEDEIQTFYQKNIDRWQGKDGILP--LADVRERVRAEALKQKAARQA 296
Query: 296 FIQLAEEQGKSLSDISLGSF------------------SKEYIPDVSLADSIFSLAKKGD 337
F A+ K++ L S + + K+G+
Sbjct: 297 FELAADTLFKNIKSGDLNLIAAKLNLKPQQTPLFSADASPPALAGETALIRKAFELKQGE 356
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
+ G I V PS E+K + + KA + + ++ LA
Sbjct: 357 LGGPVETGRGIYIVKVRQRIPSQVRPLNEIKAQVEQSFKAAKAVDLARGKAEQAARQLAA 416
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ G KG + + + +
Sbjct: 417 KKP------------LSSQSTSSFGFSAKGDVPSIGNAPDLMEAAFRLTSASPAATAPFK 464
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ D Y ++K A + + T +K+ VK E +++ QL +
Sbjct: 465 VGDRWYAI-RLKSRSEAPRAEFDRTKTAIKQGMLPVKQQEALTTWVKQLRGKAK 517
Score = 76.4 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/288 (13%), Positives = 91/288 (31%), Gaps = 22/288 (7%)
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQ--EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
+ +V++ + + KA+ + E
Sbjct: 253 EDEIQTFYQKNIDRWQGKDGILPLADVRERVRAEALKQKAARQAFELAADTLFKNIKSGD 312
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
++ I+ + + PL A+ K L + V
Sbjct: 313 LNLIAAKLNLKPQQTPLFSADASPPALAGETALIRKAFELKQ-------GELGGPVETGR 365
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
G Y+ V++++ IP++ R L E+ V++ +K K + KA Q + + +
Sbjct: 366 GIYI-VKVRQRIPSQVRPLNEIKAQVEQSFKAAKAVDLARGKAEQAARQLAAKKPLSSQS 424
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNS 579
+ G S D + D + F P + G + ++ +
Sbjct: 425 TSSFGFSAK-------GDVPSIGNAPDLMEAAFRLTSASPAATAPFKVGDRWYAIRLKSR 477
Query: 580 KVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVHDNLI 623
P E D+ + + Q M ++ L + + L+ + + ++ L+
Sbjct: 478 SEAPRAEFDRTKTAIKQGMLPVKQQEALTTWVKQLRGKAKIEINQALV 525
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/373 (9%), Positives = 94/373 (25%), Gaps = 9/373 (2%)
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
L + + K + F + + + ++ G
Sbjct: 29 MFLVWGKGSDGSGSSMAYAAKVNRHKISLEEFQNAYQRMRNIYQQIYGQSLTPEIEKTLG 88
Query: 294 KKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
K L + +G + + ++A +
Sbjct: 89 LKKAALNSLIDTALILKEAKKMGITASKDEVSGAIAAMPMFQKDGVFSFDLYQQLLKSNR 148
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ + K A ++ + ++ + +++ + + L +
Sbjct: 149 ITAKEFEEAQQRELILKKTRQAIINKVAVSDQEALDLFRKENDRIELEYLSYGPADVMG- 207
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
I + K ++ K ++ + + ++ ++ I
Sbjct: 208 -EIRPTEAELKEFLQKNQDRFRTAEKAEISYVLIDPASQAARQSLTEDEIQTFYQKNIDR 266
Query: 471 SI-PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
L +V V+ + K A + A + + K G + I L
Sbjct: 267 WQGKDGILPLADVRERVRAEALKQKAARQAFELAADTLFKNIKSG-DLNLIAAKLNLKPQ 325
Query: 530 TTNQINRMDNENKFFGY-DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
T + + G I + F + P+E G + KV V+ +
Sbjct: 326 QTPLFSADASPPALAGETALIRKAFELKQGELGG-PVETGRGIYIVKVRQRIPSQVRPLN 384
Query: 589 KFISYLTQMMNKD 601
+ + + Q
Sbjct: 385 EIKAQVEQSFKAA 397
>gi|294669107|ref|ZP_06734191.1| peptidyl-prolyl cis-trans isomerase D [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308921|gb|EFE50164.1| peptidyl-prolyl cis-trans isomerase D [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 566
Score = 131 bits (327), Expect = 5e-28, Method: Composition-based stats.
Identities = 85/589 (14%), Positives = 197/589 (33%), Gaps = 49/589 (8%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
AKI L ++ + F+ G + + GS +V VG +K+ + + ++E
Sbjct: 12 AKIMLGLIALTFI--GFGASTVAAPGSDYIVKVGDEKISTQNVQAAVREE---------- 59
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ ++ L L A L + +G+ ++ I F ++ +F+
Sbjct: 60 --------GLESNQDALTVLTDRAYLYEGARAMGINVSLEQLKQVIMDDKGFQDENGRFN 111
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
F + LA+ G+ E + I+ +V + G S+ L++ R R +
Sbjct: 112 EQKFRNFLAQSGMTEDQLIEKLRHQFELQNVANLAANGNIVSSQQLERIARLMQAEREIR 171
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
V++ R+ A +A L +++K K Y P+ + YI + +S +E+
Sbjct: 172 TAVVDPRNFAAGVKVDDAALKAYYDKDKSKYLIPKAVKFEYIELSAKTLADRQTVSEEEV 231
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA--------FQSLKKGKKFIQLAEEQGK 305
+ + + + + + P + + ++ F LA++ +
Sbjct: 232 KKAFAEQQSSAQPKQEVSHIMFALPQGGDKAKIKAEAEKVLAEAKASPDNFAALAQKYSQ 291
Query: 306 S----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
S +LG K +I L K F V + + SF
Sbjct: 292 DAATAQSGGALGVVDKSSALPEEFKAAIAKLNKGDIALVESTAGFHIVRITNTQGQQSFD 351
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
+ ++ ++ + ++ + + +F S+ + + +
Sbjct: 352 EAKASLEAELKQKKAQQALAQMRQTLSQTTFDF---PDSLKAAAEKTGLPIQSHNE---- 404
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
+ IP + + + + D S++ + E+ E+
Sbjct: 405 WLSRQNAVQQNIPAEWLEVLFSDEVFKKKHNSDVITVGDTSWVL-RATETREESTPAFEQ 463
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
V V+ + ++A+ +A +L+ E K GK + ++ D
Sbjct: 464 VKEQVRTAYVNSESAKAAMEQAKKLLAELQKGGKP--------ELAWSEKETLSASDARL 515
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQEKDK 589
+ + P + + + G ++ +V +SKV +
Sbjct: 516 RLSPQALAVLAKAHPTDGKPAYALLEGQPAPLLVEVLSSKVQKADADES 564
>gi|34556675|ref|NP_906490.1| hypothetical protein WS0233 [Wolinella succinogenes DSM 1740]
gi|34482389|emb|CAE09390.1| conserved hypothetical protein [Wolinella succinogenes]
Length = 485
Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats.
Identities = 74/481 (15%), Positives = 164/481 (34%), Gaps = 23/481 (4%)
Query: 1 MLEIIRKASRTWVAKI---FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ ++K R V I + + F+ WG S S V VG K+ +
Sbjct: 1 MINWMQKHKRYLVITIWISVIAFVGAGFVGWGAYSFSSSSS---WVAKVGETKITQTELE 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + ++ +G ++ E+A+++G++K+ LD+L+S + F +D+GL V
Sbjct: 58 QEYARLYEFYNKIVGGSLDKEQAKALGIEKQALDSLISKTLMLNFAKDVGLRVSDEEVAK 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ + FH + KF + L + L + + +
Sbjct: 118 AVVKMEAFHVEG-KFDDKTYRKVLEENHYKPAAFERALHDSLLLEKLGVILTPSVTELEK 176
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
A + S+ + ++ + +D Y Y +
Sbjct: 177 ESLGA----AFYIQDKLSIKTLSSTSLKPVVSDEEVKSFWGENQDVYMT----DRVYDII 228
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
K +I S++EL+ Y+ K Y + R +E + + E D +K
Sbjct: 229 YSLSKNDEISASDEELKIHYDSFKNNYLGLDGRPLEFELARTRVEKDYKDAQAEKNALKT 288
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ ++ + + L S AK G+ + GY+ + IK
Sbjct: 289 YIEFKKSPTPEGTRYSLAESDETLGDELL-YRLSEAKVGETLKPVPSPEGYLTIKLMGIK 347
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA----LGTSMDEISRREKIVSI 413
S + F+ K+ N + K + ++E K+ E D++++ + +
Sbjct: 348 ESEPMKFEAAKELARNDLLAQKKRDLLEEMAKKELESFKGEVIGFIGRDDVAKISSLETE 407
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ + + ++ +LF + + S++ L ++ + +
Sbjct: 408 EAAEFLAQVFQSSEPKGYVLLDEKAVLFEILEQKLLKSEEMIKNLD---FIAQNVTQIKE 464
Query: 474 A 474
Sbjct: 465 R 465
>gi|330975098|gb|EGH75164.1| periplasmic folding chaperone [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 239
Score = 127 bits (317), Expect = 7e-27, Method: Composition-based stats.
Identities = 36/233 (15%), Positives = 84/233 (36%), Gaps = 7/233 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGLIIALMAFTGIEAMFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQELG----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ +SQ++G + L + L L+ L Q D +
Sbjct: 61 DMQRRQLAQQLSQQLGKDFDPAMLDEKLLRESALKGLIDRKLLLQGAADAKFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
++ R ++ D+ L + ++ + ++++ + +PE
Sbjct: 180 AQVEAFARLE--KQTRDFASLTLPADTSAVKVTDDEVKAHYDEHAKEFMSPEQ 230
>gi|283953940|ref|ZP_06371469.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp.
jejuni 414]
gi|283794545|gb|EFC33285.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter jejuni subsp.
jejuni 414]
Length = 496
Score = 126 bits (316), Expect = 9e-27, Method: Composition-based stats.
Identities = 79/510 (15%), Positives = 177/510 (34%), Gaps = 31/510 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKISFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G++ L +LV L F +D+G++A+ +
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIENIALSSLVEDKLLLNFAKDLGVDANENEILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y + + +F N
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNVNNLTPKDYETQLANEVIVGKLDHIF----NIPNK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + + ++K++Y + Y +
Sbjct: 175 DEELKMLASSYFMRDALSIAKIDYDKKNIKINEEDLKKLWSEHKEDY----KTKKMYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLPSSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKSVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ E DV + + AK GD + + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDSFQKDHNISES--DVYYPIDLLNKAKNGDVLRPVLYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E + ++ +A + ++E K +
Sbjct: 349 PIRNKTFEEARDEVLPIYLSEQARKNLEEKAKNSL---------------ANFKGDSIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
V K + + + + + V + D + +I +
Sbjct: 394 VSRDSSRENAKVSDNMLNDSEFSYFLMNVFNTDQNSSYVIINDSKAILYKINKQKLDMNS 453
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K E+ T +K++ + +K E ++L
Sbjct: 454 DKFEQYKTMLKQNLQNLKVNELKQELVDEL 483
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/286 (11%), Positives = 94/286 (32%), Gaps = 13/286 (4%)
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
++ + +S + + K+ + + K ++ A
Sbjct: 214 WSEHKEDYKTKKMYEISTYFLPSSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAK 273
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ + + + +D ++ I +
Sbjct: 274 NEVAKDYALMQLKSVANAKFLDLKNGKDSFQKDHNISESDVYYPIDLLNKAKNGDVLRPV 333
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
L + Y+ V++ + P R++ EE +V + + + + + KA + + +G +
Sbjct: 334 LYNNGYIIVKLNKVDPIRNKTFEEARDEVLPIYLSEQARKNLEEKAKNSLANF--KGDSI 391
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
+ ++ + D+E +F + VF+ + I N +++K+
Sbjct: 392 GFVSRDSSRENAKVSDNMLNDSEFSYF----LMNVFNTDQN--SSYVIINDSKAILYKIN 445
Query: 578 NSKVGPVQEK-DKFISYLTQMMN----KDLLDSVIAYLKSQYSVTV 618
K+ +K +++ + L Q + +L ++ LK Y + +
Sbjct: 446 KQKLDMNSDKFEQYKTMLKQNLQNLKVNELKQELVDELKKIYPIKI 491
>gi|152990776|ref|YP_001356498.1| hypothetical protein NIS_1031 [Nitratiruptor sp. SB155-2]
gi|151422637|dbj|BAF70141.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 490
Score = 126 bits (315), Expect = 1e-26, Method: Composition-based stats.
Identities = 72/394 (18%), Positives = 146/394 (37%), Gaps = 15/394 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ ++K + V I++ + F+ WG S S V VG +K+ F
Sbjct: 1 MISWMQKHKKYLVITIWISTIAFVGAGFVGWGAYKY---GSASDAVAEVGNEKITLKEFQ 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ ++ + ++ E+A+ +GLDK +L+ L+ A L+ + D+GL V
Sbjct: 58 QRYANVYNYYNKMLQGKLDQEQAKKMGLDKMVLNELIQEALLENYAHDLGLIVTDEEVAQ 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+IA +F ++ F ++ L + I K++ K L + + L
Sbjct: 118 KIASMKVFW-QNGHFEKSLYNKLLQQNRIKPKDFEQSIRKELLLNKL---HQALLYSKPL 173
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+ + L ++++K+K+ Y Y L
Sbjct: 174 QLEFDTMASALFMGDKIEYTVLTDKDIDVTVTRTELKKYYDKHKNEY----KTAPKYDLS 229
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ K ++S +EL++ Y++N+ KY + + Q D + KK
Sbjct: 230 IIEMPIKHFKVSEEELKSYYKQNRLKYKDANGKILPFDKAKKQVMHDLDIKKSKKEALKK 289
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ ++GK + L + L I ++ I YVI V+
Sbjct: 290 YIQFKKGKLQAQKHLIVAQNNTSFPLPLMQKIAQASQN-SVLKPILVEDRYVIVKVNKKI 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
P + F++ ++ + K + + E K++
Sbjct: 349 PPLPMPFEKAVTEVKKDLLQQKRYQLLLEKAKKM 382
Score = 39.5 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 46/330 (13%), Positives = 112/330 (33%), Gaps = 18/330 (5%)
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
L E S + +G + + D + + + + + +I
Sbjct: 171 KPLQLEFDTMASALFMGDKIEYTVLTDKDIDVTVTRTELKKYYDKHKNEYKTAPKYDLSI 230
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
F+ ++++ + + + K + D ++ K ++
Sbjct: 231 IEMPIKHFKVSEEELKSYYKQNRLKYKDANGKILPFDKAKKQVMHDLDIKKSKKEALKKY 290
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV--ALPDGSYMWVQIKESIPA 474
+ GK K + + K S++ + L + Y+ V++ + IP
Sbjct: 291 IQFKKGKLQAQKHLIVAQNNTSFPLPLMQKIAQASQNSVLKPILVEDRYVIVKVNKKIPP 350
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
E+ +T+VKKD K + + KA ++V KNF+ S +++
Sbjct: 351 LPMPFEKAVTEVKKDLLQQKRYQLLLEKAKKMV-------KNFKGTITEGYISKEDFDKL 403
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKF 590
N++ + + ++F + F V++ + + K + K
Sbjct: 404 NQLSPQEAQL---FLQKLFISQ--DARGFVALGNKKVVLYHILDQKLQLMPKIRKNKALI 458
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ ++ N D++I L++ Y + V+
Sbjct: 459 SNNSVKLKNTIQNDNLIKKLQTMYEIKVYK 488
>gi|255038469|ref|YP_003089090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
fermentans DSM 18053]
gi|254951225|gb|ACT95925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
fermentans DSM 18053]
Length = 705
Score = 126 bits (314), Expect = 1e-26, Method: Composition-based stats.
Identities = 72/706 (10%), Positives = 191/706 (27%), Gaps = 93/706 (13%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWG---LSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
+ IR+ ++ VA + + + F++ G ++L + + V + +++ F +
Sbjct: 4 INKIRE--KSGVAVTVIAISLILFMVGGDLLGPNSLLGGNDNQIVGEIAGKEINIKDFQS 61
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ G +N S L + + V + + +GLE ++
Sbjct: 62 RVDGFRQNYEAQSGRSLNEGELAS--LRDQAWNQFVVDIAYKKQYDKLGLEVTDEELYDM 119
Query: 119 IARS-------PLFHGKDN-KFSHDVFVSRLAR-------EGINEKEYIDHYTKMLSRTD 163
+ + F +F + V+ L + + + + + +R
Sbjct: 120 VQGNHISPSILQAFSDPTTGRFDKNAVVNYLKNLKTLPLEQQKSWENFEKSLREERTRAK 179
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKD 222
M ++ ++ Y+ + V ++A L ++ +K
Sbjct: 180 YENMLRLSTYTPKAQAEKEYVAQNTKANLRYLYVPYFSVVDTTIKVTDAQLEEYLSAHKK 239
Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQ--------AEYEKNKEKYFSPEIRTVEQ 274
Y+ + + I Y+ F V + +E++ A+ + + + Q
Sbjct: 240 EYKGTDTRSIEYVTFPVQPAKDDSAALYNEIKELARGLATAQSDSAFAAMNTDIPTPINQ 299
Query: 275 LVFPNQKEADEAFQSLKKG-------------------------------------KKFI 297
+ EA ++ G +
Sbjct: 300 SYATMSDQLKEAVKTFVPGGVYGPYREGNTYYIYKYGGTRSDSVSSAKASHILIRAENQS 359
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
A+ + ++ L + + + + A++G + V
Sbjct: 360 DSAKTAARVKAEGILAQIKAGANFEALAATSSADPGSAQRGGDLGYFQNNGAMVKPFEEA 419
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ + + I K + R+
Sbjct: 420 VFSASAPGLIPRLVESQFGFHIIKVTAPKSNTLYRIATIGKTIAPSQATRDE---AYRRA 476
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
K + E A K +L + + + + W +++ P+
Sbjct: 477 DEFANTVKSREQFEEAVKKNKALVLANANRIPESATNINAIQNAREIVRWAFKEDTKPST 536
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSS----------------KANQLVLEYSKEGKNFRD 519
+ E T K+ + KA Q+ + + D
Sbjct: 537 VSPVFETEEQYVVAVLTGKSDAKDVKVDDFRDELTTKVRNQIKAEQISAKLKGATGSLED 596
Query: 520 IGKNLGAS--LLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
I K GA + + + I+ + F + + F +++
Sbjct: 597 IAKKYGAGALVESASDISLATGFLTSAGFDPIALGKAFGLKAGQKSGVFTGENGVFIMEL 656
Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
V + + + ++ + +TQ + + V ++ +
Sbjct: 657 VNKTDAPKIADFTQYKTQVTQSLESRMSYLVNEAIRENAKIEDRRA 702
>gi|121613493|ref|YP_001000390.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
jejuni subsp. jejuni 81-176]
gi|167005333|ref|ZP_02271091.1| hypothetical protein Cjejjejuni_03670 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|87249349|gb|EAQ72309.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
jejuni subsp. jejuni 81-176]
Length = 496
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 78/510 (15%), Positives = 177/510 (34%), Gaps = 31/510 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G+ L +LV L F +D+G+ + +
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y + + +F +
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF----NIPSK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + ++++K++Y + Y +
Sbjct: 175 DEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWDEHKEDY----KTKKIYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLSVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + E DV + + AK GD + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISES--DVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E ++++ +A + ++E K D+
Sbjct: 349 PIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSL---------------VNFKGDDIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
V K I + + + + V + D + +I +
Sbjct: 394 VSRDSSRESVKLSDKILNDSEFAYFLMNVFNTDQNSSYVIINDNKAILYKINKQKLDMNS 453
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K E+ T ++++ + +K E ++L
Sbjct: 454 DKFEQYKTMLEQNLRNLKANELKQELVDEL 483
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/256 (12%), Positives = 84/256 (32%), Gaps = 13/256 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNF 303
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 304 QKDQNISESDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 363
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + + + + KA ++ + +G + + ++ + + D+E +F
Sbjct: 364 PMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEFAYF--- 418
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISYLTQMMNKDL 602
+ VF+ + I N +++K+ K+ + K L + +L
Sbjct: 419 -LMNVFNTDQN--SSYVIINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLRNLKANEL 475
Query: 603 LDSVIAYLKSQYSVTV 618
++ LK Y + +
Sbjct: 476 KQELVDELKKIYPIKI 491
>gi|86153477|ref|ZP_01071681.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|85843203|gb|EAQ60414.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
HB93-13]
Length = 496
Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats.
Identities = 78/510 (15%), Positives = 176/510 (34%), Gaps = 31/510 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G+ L +LV L F +D+G+ + +
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y + + +F +
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF----NIPSK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + + ++K++Y + Y +
Sbjct: 175 DEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDY----KTKKIYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLSVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + E DV + + AK GD + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISES--DVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E ++++ +A + ++E K D+
Sbjct: 349 PIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSL---------------VNFKGDDIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
V K I + + + + V + D + +I +
Sbjct: 394 VSRDSSRESVKLSDKILNDSEFAYFLMNVFNTDQNSSYVIINDNKAILYKINKQKLDMNS 453
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K E+ T ++++ + +K E ++L
Sbjct: 454 DKFEQYKTMLEQNLRNLKANELKQELVDEL 483
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/256 (12%), Positives = 84/256 (32%), Gaps = 13/256 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNF 303
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 304 QKDQNISESDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 363
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + + + + KA ++ + +G + + ++ + + D+E +F
Sbjct: 364 PMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEFAYF--- 418
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISYLTQMMNKDL 602
+ VF+ + I N +++K+ K+ + K L + +L
Sbjct: 419 -LMNVFNTDQN--SSYVIINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLRNLKANEL 475
Query: 603 LDSVIAYLKSQYSVTV 618
++ LK Y + +
Sbjct: 476 KQELVDELKKIYPIKI 491
>gi|157414981|ref|YP_001482237.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
81116]
gi|157385945|gb|ABV52260.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
81116]
gi|307747618|gb|ADN90888.1| Peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
jejuni subsp. jejuni M1]
gi|315931892|gb|EFV10847.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
327]
Length = 496
Score = 125 bits (312), Expect = 2e-26, Method: Composition-based stats.
Identities = 78/510 (15%), Positives = 176/510 (34%), Gaps = 31/510 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G+ L +LV L F +D+G+ + +
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y + + +F +
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF----NIPSK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + + ++K++Y + Y +
Sbjct: 175 DEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDY----KTKKIYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLSVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALIQLKNVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + E DV + + AK GD + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISES--DVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E ++++ +A + ++E K D+
Sbjct: 349 PIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSL---------------VNFKGDDIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
V K I + + + + V + D + +I +
Sbjct: 394 VSRDSSRESVKLSDKILNDSEFAYFLMNVFNTDQNSSYVIINDNKAILYKINKQKLDMNS 453
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K E+ T ++++ + +K E ++L
Sbjct: 454 DKFEQYKTMLEQNLRNLKANELKQELVDEL 483
Score = 57.9 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/256 (12%), Positives = 84/256 (32%), Gaps = 13/256 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALIQLKNVANAKFLDLKNGKDNF 303
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 304 QKDQNISESDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 363
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + + + + KA ++ + +G + + ++ + + D+E +F
Sbjct: 364 PMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEFAYF--- 418
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISYLTQMMNKDL 602
+ VF+ + I N +++K+ K+ + K L + +L
Sbjct: 419 -LMNVFNTDQN--SSYVIINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLRNLKANEL 475
Query: 603 LDSVIAYLKSQYSVTV 618
++ LK Y + +
Sbjct: 476 KQELVDELKKIYPIKI 491
>gi|153951630|ref|YP_001398361.1| peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter
jejuni subsp. doylei 269.97]
gi|152939076|gb|ABS43817.1| peptidyl-prolyl cis-trans isomerase D-like protein [Campylobacter
jejuni subsp. doylei 269.97]
Length = 496
Score = 125 bits (312), Expect = 3e-26, Method: Composition-based stats.
Identities = 77/510 (15%), Positives = 175/510 (34%), Gaps = 31/510 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G+ L +LV L F +D+G+ + +
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y ++ + +F +
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVTTDKLNQIF----NIPSK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + + ++K+NY + Y +
Sbjct: 175 DEELKMLASSYFMQDVLSIAKIDYDKKNIKINEEDLKKLWNEHKENY----KTKKIYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + E DV + + AK G + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISES--DVYYPIDLLNKAKNGGVLRPAPYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E ++++ +A + ++E K D+
Sbjct: 349 PIRNKTFEEAREEVLPMYLSEQARKNLEEKTKNSL---------------VNFKGDDIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
V K I + + + + V + D + +I +
Sbjct: 394 VSRDSSRESVKLSDKILNDSEFAYFLMNVFNTDQNSSYVIINDNKAILYKINQQKLDMSS 453
Query: 478 K-LEEVLTDVKKDWKTVKTAEEVSSKANQL 506
E+ T ++++ + +K E ++L
Sbjct: 454 DKFEQYKTMLEQNLQNLKANELKQELVDEL 483
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/256 (12%), Positives = 88/256 (34%), Gaps = 13/256 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNF 303
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 304 QKDQNISESDVYYPIDLLNKAKNGGVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 363
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + + + + K ++ + +G + + ++ + + D+E +F
Sbjct: 364 PMYLSEQARKNLEEKTKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEFAYF--- 418
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQMMNK----DL 602
+ VF+ + I N +++K+ K+ +K +++ + L Q + +L
Sbjct: 419 -LMNVFNTDQN--SSYVIINDNKAILYKINQQKLDMSSDKFEQYKTMLEQNLQNLKANEL 475
Query: 603 LDSVIAYLKSQYSVTV 618
++ LK Y + +
Sbjct: 476 KQELVDELKKIYPIKI 491
>gi|330889992|gb|EGH22653.1| periplasmic folding chaperone [Pseudomonas syringae pv. mori str.
301020]
Length = 427
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/437 (14%), Positives = 146/437 (33%), Gaps = 31/437 (7%)
Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
++ + ++++ + +PE + YI K+++ +++LQA Y+K
Sbjct: 1 PADTTAVKVTDDEVKAHYDQHAKEFMSPEQVVLDYIELKKSSFFDKVQVKDEDLQAAYQK 60
Query: 260 NKEKYFSPEIRTVEQL-------VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----S 308
+ + + +E Q L KG+ F LA+E +
Sbjct: 61 EIANLSEQRRAAHILIEVNDKLNDEQAKAKIEEIQQRLAKGEDFAALAKEYSQDPGSSSK 120
Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
LG K + D + D++++L K + + FG+ + + ++ +F +K
Sbjct: 121 GGDLGYAGKG-VYDPAFEDTLYALNKDQ-VSQPVRTDFGWHLIKLLGVEAPSVPTFASLK 178
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
+ ++ +K E K+LE+ + + + ++ + G +
Sbjct: 179 DKLTTDLKSQLVEQKFVEVTKQLEDSAFESSDLSQPAQDLGLKVQTTAPFGREGGEGITA 238
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
A I + S +T+ L + + V+ KE + + LE V + ++
Sbjct: 239 NRAVI-----QAAFSPEVLEEGSNSNTLELDPETVVVVRSKEHLQPQQLPLESVASSIRT 293
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
+K L+ K G + + R +
Sbjct: 294 QLVKEHATAAAKAKGEALLAGLRDGKIPLA--AKQDGRDWKSMEAVTRSQ---EGVDPQV 348
Query: 549 ISQVFSGPVEMVKCFP-----IENGLSYVVFKVTNSK---VGPVQEKDKFISYLTQMMNK 600
+ +F P K P S+V+ ++ EK ++ +L +
Sbjct: 349 LQTLFRMPKPDGKGKPEFASITAADGSFVIVRLNGVNQAAAPTDAEKAQYRRFLASRAGQ 408
Query: 601 DLLDSVIAYLKSQYSVT 617
+ A L+S+ +
Sbjct: 409 QDFAAYRAQLESKAKIE 425
>gi|86151641|ref|ZP_01069855.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|85841270|gb|EAQ58518.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
260.94]
Length = 496
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 78/510 (15%), Positives = 175/510 (34%), Gaps = 31/510 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G+ L +LV L F +D+G+ + +
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y + + +F +
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF----NIPSK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + + ++K++Y + Y +
Sbjct: 175 DEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDY----KTKKIYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLSVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + E DV + + AK GD + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISES--DVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E ++++ +A + ++E K D+
Sbjct: 349 PIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSL---------------VNFKGDDIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
V K I + + + + V + D + +I +
Sbjct: 394 VSRDSSRESVKLSDKILNDSEFAYFLMNVFNTDQNSSYVIINDNKAILYKINKQKLDMNS 453
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K E+ T +++ + +K E ++L
Sbjct: 454 DKFEQYKTMFEQNLRNLKANELKQELVDEL 483
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/256 (12%), Positives = 85/256 (33%), Gaps = 13/256 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNF 303
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 304 QKDQNISESDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 363
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + + + + KA ++ + +G + + ++ + + D+E +F
Sbjct: 364 PMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEFAYF--- 418
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISYLTQMMNKDL 602
+ VF+ + I N +++K+ K+ + K F L + +L
Sbjct: 419 -LMNVFNTDQN--SSYVIINDNKAILYKINKQKLDMNSDKFEQYKTMFEQNLRNLKANEL 475
Query: 603 LDSVIAYLKSQYSVTV 618
++ LK Y + +
Sbjct: 476 KQELVDELKKIYPIKI 491
>gi|153837998|ref|ZP_01990665.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus
AQ3810]
gi|149748606|gb|EDM59465.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus
AQ3810]
Length = 459
Score = 124 bits (310), Expect = 4e-26, Method: Composition-based stats.
Identities = 71/469 (15%), Positives = 174/469 (37%), Gaps = 27/469 (5%)
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
R ++ + + + + R + + ++ + ++ + +++
Sbjct: 1 MREQLLTALQSSEFTLPGEVQSQGKLFTQTRDIRTVTIDLAEFAKKVELTDEEIQAYYKA 60
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
DN+ PE ++SY+ +K+I++++++++ Y+++ +KY S E R V ++
Sbjct: 61 NPDNFTRPEQVKVSYVELSAEALKKQIQVTDEDVKKYYDEHLDKYSSEEQRRVAHILVEG 120
Query: 280 QKEADEA--FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLA 333
EA L G F +A+E+ + LG ++ + D + ++ F+L
Sbjct: 121 DDEAKAQAILDELNAGADFAAVAQEKSDDFGSAENGGDLGWIERDVM-DPAFEEAAFALK 179
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
GD + ++ FGY I + +K + F EV +I ++ KA ++ E LE
Sbjct: 180 NPGDMSGLVKSDFGYHIIKLEELKDAVAKPFDEVAAEIKQELVDQKAVDQFYELQNELER 239
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
+ + K ++ ++ DF + + + + LL +
Sbjct: 240 VAFEYPDSLDDAS--KAINQEVKTTDFISQVDAPEVLRNQAVMQALLS--PEVKEDGLNS 295
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ + + V++++S L EV V + VK + ++V ++
Sbjct: 296 EAIEVAPEHIIVVRVEDSRDETVLPLAEVKDQVVAELSRVKGEQGALELGTKVVAALNEG 355
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GL 569
+ + ++R + VF+ +
Sbjct: 356 NT---AVLAENNLTFGEQETVDRRSP--------LATTVFAMAKPVDGKPVYGQSKDLEG 404
Query: 570 SYVVFKVTNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ VV ++ K +D+ + + ++ L SV+A L++ +
Sbjct: 405 NIVVIELDAVKAELDSSLEDQVAMQMQRASSQQDLSSVLAVLRANTDIE 453
>gi|319957173|ref|YP_004168436.1| hypothetical protein Nitsa_1438 [Nitratifractor salsuginis DSM
16511]
gi|319419577|gb|ADV46687.1| hypothetical protein Nitsa_1438 [Nitratifractor salsuginis DSM
16511]
Length = 488
Score = 124 bits (309), Expect = 5e-26, Method: Composition-based stats.
Identities = 68/518 (13%), Positives = 163/518 (31%), Gaps = 35/518 (6%)
Query: 1 MLEIIRKASRTWVAKIFLV---VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ ++K ++ V I++ + F+ WG S +S++ VG + F
Sbjct: 1 MIAWMQKHNKYLVVTIWIATIAFIGAGFVGWGTYKY---GSKASSIAQVGDVSITQEKFN 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+++ +QK+G + +A+ + L + + + LV A L ++ G+ +
Sbjct: 58 FTYQNLYREFAQKLGGKFDDAKAKEMKLPQLVFNRLVMQAYLLNLAKEYGIIVSDKELAE 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
IA P F F ++ + L+ ++ K + L+ ++ + G P
Sbjct: 118 AIASLPSFQS-GGAFDKKIYETFLSSRRLSAKAFESILRDDLTIEKLMKLISKGSVPYER 176
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ A + + A + +++E++K++Y+ P ++ +
Sbjct: 177 EVTAA----ALSVADKIRYTVLSPSDVNVSVDTAAVKKYWEQHKESYKTPRRYKLEILWT 232
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D EL+ Y KN Y + + + Q D ++ KK
Sbjct: 233 DTSAIN----PDEKELEKFYHKNSFDYTDAQGKELSFEAAKAQVLRDYRIKAGKKAALLD 288
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+A ++GK + L I + + Y V +
Sbjct: 289 YIALKKGKKQASEVKTVAEGSPELSDELWKEIKTHSSGSLI-KPKPVGDRYATVKVDQVI 347
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ F K A K + K++E + ++ S + +
Sbjct: 348 EPKIMDFDTASKLAEKDWL---AQAKREALNKKVENLMKNPAALTRQSAYLSLTKTE--- 401
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK-ESIPARD 476
+ L + K+ + L ++ + + +
Sbjct: 402 ------------ELPPLNLGESLQFLQKLFTSNDKNGIIDLNKKKVVYAIVDQKFEKGDE 449
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
+ + K+ + + + ++ +G
Sbjct: 450 NLSRSIKATADRIKKSEFEENLLKELSAKYPVKKFVKG 487
>gi|283956103|ref|ZP_06373590.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D
[Campylobacter jejuni subsp. jejuni 1336]
gi|283792423|gb|EFC31205.1| LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase D
[Campylobacter jejuni subsp. jejuni 1336]
Length = 496
Score = 123 bits (308), Expect = 7e-26, Method: Composition-based stats.
Identities = 76/510 (14%), Positives = 175/510 (34%), Gaps = 31/510 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G+ L +LV L F +D+G+ + +
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y + + +F +
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF----NIPSK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + + ++K++Y + Y +
Sbjct: 175 DEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDY----KTKKIYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + E DV + + AK GD + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISES--DVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E ++++ +A + ++E K D+
Sbjct: 349 PIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSL---------------VNFKGDDIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
V K I + + + + V + D + +I +
Sbjct: 394 VSRDSSRESVKLSDKILNDSEFAYFLMNVFNADQNSSYVIINDNKAILYKINKQKLDMNS 453
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K ++ T ++++ + +K E ++
Sbjct: 454 DKFKQYKTMLEQNLQNLKANELKQELVDEF 483
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/256 (12%), Positives = 87/256 (33%), Gaps = 13/256 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNF 303
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 304 QKDQNISESDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 363
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + + + + KA ++ + +G + + ++ + + D+E +F
Sbjct: 364 PMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEFAYF--- 418
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQMMN----KDL 602
+ VF+ + I N +++K+ K+ +K ++ + L Q + +L
Sbjct: 419 -LMNVFNADQN--SSYVIINDNKAILYKINKQKLDMNSDKFKQYKTMLEQNLQNLKANEL 475
Query: 603 LDSVIAYLKSQYSVTV 618
++ K Y + +
Sbjct: 476 KQELVDEFKKIYPIKI 491
>gi|205355536|ref|ZP_03222307.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|205346770|gb|EDZ33402.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
CG8421]
Length = 496
Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats.
Identities = 77/510 (15%), Positives = 175/510 (34%), Gaps = 31/510 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G+ L +LV L F +D+G+ + +
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y + + +F +
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF----NIPSK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + + ++K++Y + Y +
Sbjct: 175 DEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDY----KTKKIYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + E DV + + AK GD + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISES--DVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E ++++ + + ++E K D+
Sbjct: 349 PIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKNSL---------------VNFKGDDIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
V K I + + + + V + D + +I +
Sbjct: 394 VSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLDMNS 453
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K E+ T ++++ + +K E ++L
Sbjct: 454 DKFEQYKTMLEQNLQNLKANELKQELVDEL 483
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/256 (12%), Positives = 90/256 (35%), Gaps = 13/256 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNF 303
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 304 QKDQNISESDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 363
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + +T + + KA ++ + +G + + ++ + + D+E +F
Sbjct: 364 PMYLSEQTRKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEFAYF--- 418
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQMMN----KDL 602
+ VF+ + + N +++K+ K+ +K +++ + L Q + +L
Sbjct: 419 -LMNVFNTDQN--SSYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQNLKANEL 475
Query: 603 LDSVIAYLKSQYSVTV 618
++ LK Y + +
Sbjct: 476 KQELVDELKKIYPIKI 491
>gi|148926659|ref|ZP_01810340.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|145845178|gb|EDK22273.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
CG8486]
Length = 496
Score = 123 bits (307), Expect = 9e-26, Method: Composition-based stats.
Identities = 78/510 (15%), Positives = 174/510 (34%), Gaps = 31/510 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G+ L +LV L F +D+G+ + +
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y + +F +
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEAITDKLNQIF----NIPSK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + + ++K++Y + Y +
Sbjct: 175 DEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDY----KTKKIYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + E DV + S AK GD + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISES--DVYYPIDLLSKAKNGDVLRPAPYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E ++++ + + ++E K D+
Sbjct: 349 PIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKNSL---------------VNFKGDDIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
V K I + + + + V + D + +I +
Sbjct: 394 VSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLDMNS 453
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K E+ T ++++ + +K E ++L
Sbjct: 454 DKFEQYKTMLEQNLQNLKANELKQELVDEL 483
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/256 (12%), Positives = 90/256 (35%), Gaps = 13/256 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNF 303
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 304 QKDQNISESDVYYPIDLLSKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 363
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + +T + + KA ++ + +G + + ++ + + D+E +F
Sbjct: 364 PMYLSEQTRKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEFAYF--- 418
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQMMN----KDL 602
+ VF+ + + N +++K+ K+ +K +++ + L Q + +L
Sbjct: 419 -LMNVFNTDQN--SSYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQNLKANEL 475
Query: 603 LDSVIAYLKSQYSVTV 618
++ LK Y + +
Sbjct: 476 KQELVDELKKIYPIKI 491
>gi|86149807|ref|ZP_01068036.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
jejuni subsp. jejuni CF93-6]
gi|88596914|ref|ZP_01100150.1| putative peptidyl-prolyl cis-trans isomerase D homolog
[Campylobacter jejuni subsp. jejuni 84-25]
gi|218562333|ref|YP_002344112.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|85839625|gb|EAQ56885.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
jejuni subsp. jejuni CF93-6]
gi|88190603|gb|EAQ94576.1| putative peptidyl-prolyl cis-trans isomerase D homolog
[Campylobacter jejuni subsp. jejuni 84-25]
gi|112360039|emb|CAL34831.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|284925950|gb|ADC28302.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315929133|gb|EFV08360.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
305]
Length = 496
Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats.
Identities = 78/510 (15%), Positives = 177/510 (34%), Gaps = 31/510 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G+ L +LV L F +D+G+ + ++
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENQILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y + + +F +
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEVITDKLNQIF----NIPSK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + + ++K++Y + Y +
Sbjct: 175 DEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDY----KTKKIYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + E DV + + AK GD + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISES--DVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E ++++ +A + ++E K D+
Sbjct: 349 PIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSL---------------VNFKGDDIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
V K I + + + + V + D + +I +
Sbjct: 394 VSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLDMNS 453
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K E+ T ++++ + +K E ++L
Sbjct: 454 DKFEQYKTMLEQNLQNLKANELKQELVDEL 483
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/256 (12%), Positives = 89/256 (34%), Gaps = 13/256 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNF 303
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 304 QKDQNISESDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 363
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + + + + KA ++ + +G + + ++ + + D+E +F
Sbjct: 364 PMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEFAYF--- 418
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQMMN----KDL 602
+ VF+ + + N +++K+ K+ +K +++ + L Q + +L
Sbjct: 419 -LMNVFNTDQN--SSYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQNLKANEL 475
Query: 603 LDSVIAYLKSQYSVTV 618
++ LK Y + +
Sbjct: 476 KQELVDELKKIYPIKI 491
>gi|57236997|ref|YP_178798.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
jejuni RM1221]
gi|57165801|gb|AAW34580.1| peptidyl-prolyl cis-trans isomerase D, homolog [Campylobacter
jejuni RM1221]
gi|315058157|gb|ADT72486.1| Peptidyl-prolyl cis-trans isomerase ppiD [Campylobacter jejuni
subsp. jejuni S3]
Length = 496
Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats.
Identities = 78/510 (15%), Positives = 175/510 (34%), Gaps = 31/510 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G+ L +LV L F +D+G+ + +
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y + + +F +
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEVITDKLNQIF----NIPSK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + + ++K++Y + Y +
Sbjct: 175 DEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDY----KTKKIYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + E DV + S AK GD + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISES--DVYYPIDLLSKAKNGDVLRPAPYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E ++++ + + ++E K D+
Sbjct: 349 PIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKNSL---------------VNFKGDDIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
V K I + + + + V + D + +I +
Sbjct: 394 VSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLDMNS 453
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K E+ T ++++ + +K E ++L
Sbjct: 454 DKFEQYKTMLEQNLQNLKANELKQELVDEL 483
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/256 (12%), Positives = 90/256 (35%), Gaps = 13/256 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNF 303
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 304 QKDQNISESDVYYPIDLLSKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 363
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + +T + + KA ++ + +G + + ++ + + D+E +F
Sbjct: 364 PMYLSEQTRKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEFAYF--- 418
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQMMN----KDL 602
+ VF+ + + N +++K+ K+ +K +++ + L Q + +L
Sbjct: 419 -LMNVFNTDQN--SSYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQNLKANEL 475
Query: 603 LDSVIAYLKSQYSVTV 618
++ LK Y + +
Sbjct: 476 KQELVDELKKIYPIKI 491
>gi|315926808|gb|EFV06182.1| Putative periplasmic protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
Length = 496
Score = 123 bits (306), Expect = 1e-25, Method: Composition-based stats.
Identities = 77/510 (15%), Positives = 175/510 (34%), Gaps = 31/510 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G+ L +LV L F +D+G+ + +
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y + + +F +
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVIADKLNQIF----NIPSK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + + ++K++Y + Y +
Sbjct: 175 DEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDY----KTKKIYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + E DV + + AK GD + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISES--DVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E ++++ + + ++E K D+
Sbjct: 349 PIRNKTFEEAREEVLPMYLSEQTRKNLEEKAKNSL---------------VNFKGDDIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
V K I + + + + V + D + +I +
Sbjct: 394 VSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLDMNS 453
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K E+ T ++++ + +K E ++L
Sbjct: 454 DKFEQYKTMLEQNLQNLKANELKQELVDEL 483
Score = 57.9 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/256 (12%), Positives = 90/256 (35%), Gaps = 13/256 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNF 303
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 304 QKDQNISESDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 363
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + +T + + KA ++ + +G + + ++ + + D+E +F
Sbjct: 364 PMYLSEQTRKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEFAYF--- 418
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-DKFISYLTQMMN----KDL 602
+ VF+ + + N +++K+ K+ +K +++ + L Q + +L
Sbjct: 419 -LMNVFNTDQN--SSYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQNLKANEL 475
Query: 603 LDSVIAYLKSQYSVTV 618
++ LK Y + +
Sbjct: 476 KQELVDELKKIYPIKI 491
>gi|115378201|ref|ZP_01465373.1| peptidyl-prolyl cis-trans isomerse domain protein, putative
[Stigmatella aurantiaca DW4/3-1]
gi|115364789|gb|EAU63852.1| peptidyl-prolyl cis-trans isomerse domain protein, putative
[Stigmatella aurantiaca DW4/3-1]
Length = 589
Score = 122 bits (305), Expect = 2e-25, Method: Composition-based stats.
Identities = 75/522 (14%), Positives = 174/522 (33%), Gaps = 43/522 (8%)
Query: 8 ASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSV----GRQKVPFSSFINSWKQ 62
+R ++ + +V + V F + +G F V S +++P F +
Sbjct: 72 NARKVLSLVGIVAIAVVFTLQFGPGSTGFGSGRGPVVPSAVAVVNGKEIPLRDFSRVYAG 131
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+L + + G + AR L +++D LV+ L Q E G+ + I +
Sbjct: 132 QLNSLRNR-GVPIPESYARQS-LPSQVMDQLVTRELLSQAAERHGINPSDDELRKLIHEN 189
Query: 123 PLFHGKDNKFSHDVFVSRLAREG--INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
FH KD +F+ + + L K + ++ ++ + + G + + +
Sbjct: 190 ADFH-KDGQFNFEQYKRALRDYYRTTEPKYEEELRRQLAAQKMLQVVNSGAVVSDDEVRA 248
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ ++ + + V L + + P+ A L ++ + + D
Sbjct: 249 RYEKDANQAKVVFARFLPTMYAAQVPAPTPAQLEEFRKAHNDEISTYYESNRFMYQQ--- 305
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ + +Q + + + GK F +A
Sbjct: 306 -------------AERAKARQILVKLAPDAAAQQKAEAKSRAEALHKEVTEGGKDFATVA 352
Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
E+ + S LG + + + +LA+++F+LA G + I G+ + V
Sbjct: 353 RERSEDPGTKASGGDLGWVERASL-EPTLAEAVFALAPNG-VSQPIETKLGWHVVKVEEK 410
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYK----------RLEEFLALGTSMDEISR 406
+ + +E +IA + + ++++ + + + L + +
Sbjct: 411 QAAQDKKLEEAAPEIATTLYKQQKAKELAKAAAEKALASLKGGQTLQQLFPPEKEGQPAL 470
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ V+ G+ V + L F P D L +G ++
Sbjct: 471 QRFETETRPEAVETGSFTAGGESVPYLGLAPALSTAAFSAPGPQVLDQVFPLSEG-FVVA 529
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
Q+ E + D + ++++ + K E S L
Sbjct: 530 QVTERVKPSDETFTQKKDELREQTRRAKQIEMTESFLKALRE 571
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 65/481 (13%), Positives = 134/481 (27%), Gaps = 50/481 (10%)
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
G+ Q+ ++ V +L+ +PS+ L + + D ++ ++
Sbjct: 139 RGVPIPESYARQSLPSQVMDQLVTRELLSQAAERHGINPSDDELRKLIHENADFHKDGQF 198
Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
Y +EL+ + K V + E D
Sbjct: 199 NFEQYKRALRDYYRTTEPKYEEELRRQLAAQKMLQVVNSGAVVSDDEVRARYEKDANQAK 258
Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ + + Q + + L F K + + +
Sbjct: 259 VVFARFLPTMYAAQVPAPTPAQLEEFRKA---------------HNDEISTYYESNRFMY 303
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
V ++A KE + ++F + E K
Sbjct: 304 QQAERAKARQILVKLAPDAAAQQKAEAKSRAEALHKEVTEGGKDFATVARERSEDPGT-K 362
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
DL V+ A + L P + G ++ V+++
Sbjct: 363 ASGGDLGWVERASLEP-------------TLAEAVFALAPNGVSQPIETKLGWHV-VKVE 408
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG---KNLGA 526
E A+D+KLEE ++ + A+E++ A + L K G+ + + K
Sbjct: 409 EKQAAQDKKLEEAAPEIATTLYKQQKAKELAKAAAEKALASLKGGQTLQQLFPPEKEGQP 468
Query: 527 SLLTTNQINRMDNENKF-------------FGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
+L R + + FS P V +VV
Sbjct: 469 ALQRFETETRPEAVETGSFTAGGESVPYLGLAPALSTAAFSAPGPQVLDQVFPLSEGFVV 528
Query: 574 FKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
+VT + KD+ + ++ +S + L+ +V ++ IQ +
Sbjct: 529 AQVTERVKPSDETFTQKKDELREQTRRAKQIEMTESFLKALRETGTVVENNEAIQTIVGA 588
Query: 630 E 630
Sbjct: 589 S 589
>gi|301168101|emb|CBW27687.1| putative peptidyl-prolyl cis-trans isomerase [Bacteriovorax marinus
SJ]
Length = 495
Score = 122 bits (304), Expect = 2e-25, Method: Composition-based stats.
Identities = 68/504 (13%), Positives = 161/504 (31%), Gaps = 27/504 (5%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K S IF+ ++ + F+ G + ++V VG + + + + ++L
Sbjct: 9 KKSSNIFVTIFIGLIVISFMFTG---YQSLTTSPNSVAKVGDEFIKVEEYQREYNRQLEF 65
Query: 67 ISQKIGF-VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+G + +++ + + + L NLV + +G+ + EI R P F
Sbjct: 66 FRNILGGKDLTTQQIQQFRIKETALSNLVQLKLTLILGDKVGVIPSSEEIKTEIKRQPYF 125
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ +FS + + LA +N ++ + + R M S L + F
Sbjct: 126 QV-NGQFSINRYKDLLAANRMNPAQFEESIKDQV-RGMNSDAIFTSMPISESYLKDVENF 183
Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
+ + I ++ + SN +T++ + R D
Sbjct: 184 RSQKIEANIIEIDKEALRKKLTISNDEITKYLADETNANRVQSLFNERKPTLDQ------ 237
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
+E++A + K + + + + K+ + E+
Sbjct: 238 ----KEEVKARHILFKTDGKNDKQKLKAITTLRGKLTKSNFISQAKQHTE------EEAG 287
Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
+ L F++ + + + K G + + FGY I +V + K + + +
Sbjct: 288 KSTGGDLRWFTRGAMVPE--FEKVAFELKPGTISRPVKTPFGYHIIYVEDKKEAKEATLE 345
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
E K +A+++ K E E S SR+ + + K++
Sbjct: 346 EFKNQLASELIRK---TKNDEVEAMATEAKKEVASAANSSRKLNALKKKYGIKIELSKEI 402
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
+ + + + L + S + V ++ EE + +
Sbjct: 403 SKLDGSTGQIQLEAANLNDIFKKGLDQSELYTFDRASNIVVVKTSKFDNKESVNEESMDE 462
Query: 486 VKKDWKTVKTAEEVSSKANQLVLE 509
+ + + + + L
Sbjct: 463 RNRSLRNILSKKLKQDILKDLEAS 486
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 53/459 (11%), Positives = 138/459 (30%), Gaps = 12/459 (2%)
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ D+ + R + + R++ D + + Q+ K +
Sbjct: 36 TTSPNSVAKVGDEFIKVEEYQREYNRQLEFFRNILGGKDLTTQQIQQFRIKETALSNLVQ 95
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
K + V EI + + Y + ++ + + N + +E+ +
Sbjct: 96 LKLTLILGDKVGVIPSSEEIKTEIKRQPYFQVNGQFSINRYKDLLAANRMNPAQFEESIK 155
Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
+G + S S + + + ++ + +K I
Sbjct: 156 DQVRGMNSDAIFTSMPISESYLKDVENFRSQKIEANIIEIDKEALRKKLT---ISNDEIT 212
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
F E K + + + K D K ++ L T++ +
Sbjct: 213 KYLADETNANRVQSLFNERKPTLDQKEEVKARHILFKTDGKNDKQKLKAITTLRGKLTKS 272
Query: 409 KIVSIDLPLVDFA-GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+S + GK G F + Y +
Sbjct: 273 NFISQAKQHTEEEAGKSTGGDLRWFTRGAMVPEFEKVAFELKPGTISRPVKTPFGYHIIY 332
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSSKANQLVLEYSKEGKNFRDIGKNL 524
+++ A++ LEE + + E ++++A + V + + + K
Sbjct: 333 VEDKKEAKEATLEEFKNQLASELIRKTKNDEVEAMATEAKKEVASAANSSRKLNALKKKY 392
Query: 525 GASLLTTNQINRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
G + + +I+++D ++ +F ++ + + + + VV K +
Sbjct: 393 GIKIELSKEISKLDGSTGQIQLEAANLNDIFKKGLDQSELYTFDRASNIVVVKTSKFDNK 452
Query: 583 P---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ D+ L +++K L ++ L++ +V
Sbjct: 453 ESVNEESMDERNRSLRNILSKKLKQDILKDLEASVTVKD 491
>gi|307610560|emb|CBX00148.1| hypothetical protein LPW_18931 [Legionella pneumophila 130b]
Length = 316
Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/289 (18%), Positives = 121/289 (41%), Gaps = 6/289 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ + + + VA + ++++ + F ++G+ S S V V + + +F ++
Sbjct: 1 MLQKLNEHIQGVVAWLVIILIAITFTLFGVDYYFQSRQISDAKVIVNDKPITMQAFETNY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ Q+ + + A L ++L+ +++ Q G E + I
Sbjct: 61 RRTRA---QQDLPQMTA--ADEKNLQNQVLNQMITNEVSIQAARKYGFEVSPEQANAAIV 115
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ P F +D FS + L+ + + + + F+G + +
Sbjct: 116 QIPQFQ-EDGHFSAQRYQQALSGALFTPETFQKEVRQGMLLNQQRFAFMGTSFALSDEIK 174
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ R Y + R DY+ + + A S + ++ ++ + E + Y+L +H
Sbjct: 175 RFVRLYMQTRDYDYLTVPSDRFEQQAKISEDDIKSYYNQHHKKFMTSEQVTLDYVLLSMH 234
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
+ + +I+IS DE+++ YE+NK Y +P V ++F + A + Q
Sbjct: 235 DIKSQIKISPDEIKSYYEENKSNYLTPAQWRVAHILFAVPENATKEEQD 283
>gi|57167705|ref|ZP_00366845.1| conserved hypothetical secreted protein, putative [Campylobacter
coli RM2228]
gi|57020827|gb|EAL57491.1| conserved hypothetical secreted protein, putative [Campylobacter
coli RM2228]
Length = 495
Score = 121 bits (303), Expect = 3e-25, Method: Composition-based stats.
Identities = 89/509 (17%), Positives = 177/509 (34%), Gaps = 30/509 (5%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + + I++ + FL WG D F+++ SS+V VG +K+ ++ F
Sbjct: 1 MLTWMQHHKKYLIVTIWISTIAFVGAGFLGWGAYD--FNLNRSSSVAVVGDEKINYNEFN 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ Q +Q +N E A+ +G++ L +LV L F +D+GL + V
Sbjct: 59 VRYNQIFNYYNQISNGGLNEESAKQLGIENAALSSLVENKLLLNFAKDLGLGSSENEVIQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+A + F F+ ++ L I KEY + + + +F
Sbjct: 119 ALAETKAFQDPSGDFNKTIYYELLNANNITPKEYEKTLSNEIIIGKLEQIF----NLPQT 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + L + + ++K++Y K +
Sbjct: 175 DEELKMLGASYFMQDSLNIAKLEQDKENIKVNEEELKKLWNEHKEDY--KTKKVYEISTY 232
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +KI+ S E E NK KY + + D A LK
Sbjct: 233 YLPVDMQKIDDSKLEEFYNNENNKFKYKDFSGKIMSFEAAKKDVAKDYALAQLKNTANAK 292
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L ++GK DV S AK GD GY+I ++
Sbjct: 293 FLELKEGKDKFQKDENITDS----DVYYPLEALSRAKNGDVLRPSEYQNGYIIIKLNKTN 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P T +F E ++++ +A + ++E K+ E ++
Sbjct: 349 PVRTKTFDEAREELMPIYISEQAKKNLEEKAKQNLE---------------NFSGTNIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
V K + E F + + ++ + + D + ++ K+ +
Sbjct: 394 VSRDTVRNDAKISNILNEAEFSYFLMNVFNSDQNRSYVILNEDKAILYKINKQKLDMNPE 453
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K ++ T + ++ +++K E +L
Sbjct: 454 KFQQYRTMLNQNLQSLKANEMKQELIEEL 482
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/306 (10%), Positives = 87/306 (28%), Gaps = 23/306 (7%)
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
D KK V + P + K + K
Sbjct: 199 DKENIKVNEEELKKLWNEHKEDYKTKKVYEISTYYLPVDMQKIDDSKLEEFYNNENNKFK 258
Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
K E A + + + + + ++ K ++ I +
Sbjct: 259 YKDFSGKIMSFEA-AKKDVAKDYALAQLKNTANAKFLELKEGKDKFQKDENITDSDVYYP 317
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+ Y+ +++ ++ P R + +E ++ + + + + +
Sbjct: 318 LEALSRAKNGDVLRPSEYQNGYIIIKLNKTNPVRTKTFDEAREELMPIYISEQAKKNLEE 377
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD----GISQVFSGPV 557
KA Q + + ++ + + + + VF+
Sbjct: 378 KAKQNLENF-----------SGTNIGFVSRDTVRNDAKISNILNEAEFSYFLMNVFNSDQ 426
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKFISYLTQMMN----KDLLDSVIAYLKS 612
+ + I N +++K+ K+ ++ ++ + L Q + ++ +I LK
Sbjct: 427 N--RSYVILNEDKAILYKINKQKLDMNPEKFQQYRTMLNQNLQSLKANEMKQELIEELKK 484
Query: 613 QYSVTV 618
Y + +
Sbjct: 485 TYPIKI 490
>gi|315124196|ref|YP_004066200.1| hypothetical protein ICDCCJ07001_630 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|315017918|gb|ADT66011.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 454
Score = 120 bits (299), Expect = 8e-25, Method: Composition-based stats.
Identities = 72/475 (15%), Positives = 161/475 (33%), Gaps = 30/475 (6%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I+ + + FL WG D F+++ SS+V +VG +K+ FS F
Sbjct: 1 MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYD--FNLNRSSSVATVGNEKIGFSEFD 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q L +Q + E A +G+ L +LV L F +D+G+ + +
Sbjct: 59 TRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLNFAKDLGIGVNENEILQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A + F F+ ++ L + K+Y + + +F +
Sbjct: 119 KLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEVITDKLNQIF----NIPSK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + L + + ++K++Y + Y +
Sbjct: 175 DEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHKEDY----KTKKIYEIS 230
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+I + EL+ Y +++ K + + E + + ++
Sbjct: 231 TYFLSVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVAN 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + E DV + + AK GD + GY+I ++ +
Sbjct: 291 AKFLDLKNGKDNFQKDQNISES--DVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVD 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +F+E ++++ +A + ++E K D+
Sbjct: 349 PIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSL---------------VNFKGDDIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
V K I + + + + V + D + +I +
Sbjct: 394 VSRDSSRESVKLSDKILNDSEFAYFLMNVFNTDQNSSYVIINDNKAILYKINKQK 448
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 25/219 (11%), Positives = 72/219 (32%), Gaps = 8/219 (3%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 244 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNF 303
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 304 QKDQNISESDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 363
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + + + + KA ++ + +G + + ++ + + D+E +F
Sbjct: 364 PMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKLSDKILNDSEFAYF--- 418
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
+ VF+ + I N +++K+ K+ +
Sbjct: 419 -LMNVFNTDQN--SSYVIINDNKAILYKINKQKLDMNSD 454
>gi|224824986|ref|ZP_03698092.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
2002]
gi|224602657|gb|EEG08834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
2002]
Length = 340
Score = 120 bits (299), Expect = 9e-25, Method: Composition-based stats.
Identities = 52/329 (15%), Positives = 115/329 (34%), Gaps = 21/329 (6%)
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
++ G + + LG F + + + + G + ++ FG+ I + +K
Sbjct: 28 QDPGSAANGGDLGFFGRGAMVKPFEDVAFRM--QPGQISELVETEFGFHILKLDEVKQP- 84
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
F VK ++ +++ KA+ + + ++L E D + + + D+
Sbjct: 85 --VFAAVKGEVEQRLKRQKAAAQFRAASEKLGELAYQQA--DSLKAISDQLKLSPQHSDW 140
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+ + K V L + + V++ E P R + L
Sbjct: 141 LVRGKPASDPVLNNPKLLEAAFSDDVLKGKHNSEPVDLGKNTLVVVRVAEHQPERQQTLA 200
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV +K + + A+ + + L+ E K GKN ++R
Sbjct: 201 EVQNVIKAELVRREGAKLAEKRGDALLTEL-KAGKNID------SQPWEPAQTVSRRSFG 253
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGPV---QEKDKFISYLT 595
+ VF+ + F ++G +YVV+++ P E+ + +
Sbjct: 254 ALSLPE--VRAVFAASATKLPAFAGVKQDGGNYVVYRIDKVIPAPAPSLAERSQLSGLIG 311
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+M + S + L+ +Y VT+ +
Sbjct: 312 EMNANAQVASYLEALREKYKVTLSQQPAE 340
>gi|319790371|ref|YP_004152004.1| SurA domain protein [Thermovibrio ammonificans HB-1]
gi|317114873|gb|ADU97363.1| SurA domain protein [Thermovibrio ammonificans HB-1]
Length = 436
Score = 120 bits (299), Expect = 9e-25, Method: Composition-based stats.
Identities = 57/266 (21%), Positives = 106/266 (39%), Gaps = 9/266 (3%)
Query: 1 MLEIIRKASR--TWVAKIFLV-VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML IRK R + I + FL+WG FS S V +V Q + + F
Sbjct: 1 MLSKIRKNLRAFSIPLWIVAASFVGTIFLVWGRGS--FSGPSGSQVATVNGQPITLAEFN 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+K + +K+G N + + + + L LV A L + ++ GL+ V
Sbjct: 59 REYKTVEDELRRKLGDNFN-KLVKPNDIKRIALQRLVQRALLIELAKEEGLKVSDWAVAK 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P+F ++ KFS ++ + L +G+ + + + K L V+ + +
Sbjct: 118 AIEEMPIFQ-ENGKFSVKLYKAFLRAQGLTPQAFEETVRKDLLVQKVLTVVNHAPSVTQA 176
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + + F R + Y V S + Q+++K+K+ + + + + F
Sbjct: 177 ELTELYKKSFGQRKIGYKVFTADQFNP--KVSEEEVEQFYKKHKEQFTKEAGEEVYLLSF 234
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEK 263
+ + K+ EL + E K K
Sbjct: 235 ENTPQGKERAKEAYELAKKGELEKLK 260
Score = 44.5 bits (102), Expect = 0.060, Method: Composition-based stats.
Identities = 35/311 (11%), Positives = 91/311 (29%), Gaps = 26/311 (8%)
Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
+ + +++ V++ + A ++ + + K
Sbjct: 144 GLTPQAFEETVRKDLLVQKVLTVVNHAPSVTQAELTELYKKSFGQRKIGYKVFTADQFNP 203
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEIS--RREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
K SE+ E + + + + +E+ E + KG+ +
Sbjct: 204 KVSEEEVEQFYKKHKEQFTKEAGEEVYLLSFENTPQGKERAKEAYELAKKGELEKLKAFN 263
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ K+ + + ++K+ + LE+V +++ K K
Sbjct: 264 PKPAPEKLAKELQKRPFIFRSENGRLILAFKLKK---SETVPLEKVKAQIEEQLKEEKAL 320
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-SG 555
E A + + T ++ + ++F S
Sbjct: 321 ELALKAAKSFNGTLQSGNFTPQTF-------VQTFKPLDVQQ----------VDRLFVST 363
Query: 556 PVEMVKCFPIENGLSYVVFK--VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
P P+E G + +T K+ + + + + L+ ++ L+ +
Sbjct: 364 PAGRRVIMPLEKGYGVFEPEGPLTAGKI-DENKLNAVKLLVLNAKAQSDLNYLLTLLEQK 422
Query: 614 YSVTVHDNLIQ 624
SV V+ L +
Sbjct: 423 ASVKVNPQLFK 433
>gi|228472535|ref|ZP_04057295.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase
[Capnocytophaga gingivalis ATCC 33624]
gi|228275948|gb|EEK14704.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase
[Capnocytophaga gingivalis ATCC 33624]
Length = 707
Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats.
Identities = 86/637 (13%), Positives = 185/637 (29%), Gaps = 67/637 (10%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
LE IRK RT + + + F+I G+ + + SV + + F +
Sbjct: 4 LEKIRK--RTVFLILVIGLALFAFVISGIFSR-NTTPDQLVIGSVNGDDISYREFSTQVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ IG + + V G +DQ E +G+ +++ I
Sbjct: 61 NTTRNMGGSIGQGY---------IVNALWQQAVQGKIIDQQFEKLGISVGKEQIFAMIKR 111
Query: 121 -----RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM-------LSRTDVVGMF 168
+ P F + +FS F +A+ + R + +
Sbjct: 112 VPQYAQDPQFQDEKGQFSIAKFAQVIAQIKKVNPAQYQQWQAEEKSYVDAAKRELYLSLI 171
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAP 227
G+ + + A + + +Y+ L + S+A + + + +K +
Sbjct: 172 RAGLGVTLKDGEDAYHRQADKVTFNYVTLPYTSIPDSEVKVSDAEIDAYVKAHKKQFEQK 231
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
E + I ++ E I+ LQA +
Sbjct: 232 EMRNIQFVWVTETASEADIKQVEQSLQALNAPRV----------------VYNSQRQAND 275
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G + + SD+ S + GD +
Sbjct: 276 TLPGFGALAAKDVPQFVNENSDVPFDSLYVSKDRLPADHAEALYNLPVGDLYGPYKEANT 335
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y + + KP+ + + + + + KE+ K E + E
Sbjct: 336 YRYTRMLSKKPNAQMRASHILIAYKGSLPGNETITRSKEEAKAKAEDILAKVKAGEDYAA 395
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + D + G P F + + V G ++
Sbjct: 396 LAM----VNSDDSSNAPNGGDLDFFSPGMMVPTFNDYVFHGKVGDIGLVETNFGFHI--- 448
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
R+ ++ T V+ + T E+ +K + + K+F + G +
Sbjct: 449 ---IKITDQREGVQLATIVRNIEPSKATQNEIYTKLTAFNEQALQHPKDFASLAAKAGYN 505
Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS------ 579
+L N ++ M + G + F+ ++ + Y++ ++T
Sbjct: 506 VLPANNLDAMAEDIPGLGNNRALVRWAFADDTKVGDIHREDVKDGYIIAQLTKKISEGVA 565
Query: 580 -------KVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
V P+ K+K L++ + L+ V
Sbjct: 566 SASDARPIVAPILIKEKKAKQLSEKLKGSTLEQVAQA 602
Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/522 (11%), Positives = 149/522 (28%), Gaps = 35/522 (6%)
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
++ + + + + + FV + + ++ + L+ VV
Sbjct: 210 VKVSDAEIDAYVKAHKK-QFEQKEMRNIQFVWVTETASEADIKQVEQSLQALNAPRVVYN 268
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
++ N+ S L + N
Sbjct: 269 SQR----QANDTLPGFGALAAKDVPQFVNENSDVPFDSLYVSKDRLPADHAEALYNLPVG 324
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ + N +++A + K P T+ + + +A++
Sbjct: 325 DLYGPYKEANTYRYTRMLSKKPNAQMRASHILIAYKGSLPGNETITRSKEEAKAKAEDIL 384
Query: 288 QSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+K G+ + LA + + + L FS + + K GD ++
Sbjct: 385 AKVKAGEDYAALAMVNSDDSSNAPNGGDLDFFSPGMMVPT--FNDYVFHGKVGDIG-LVE 441
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
+FG+ I +++ + ++ + + + + E+ L
Sbjct: 442 TNFGFHIIKITDQREGVQLATIVRNIEPSKATQNE----IYTKLTAFNEQALQHPKDFAS 497
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
++ + + +D +D+ G + L+ F D + H + DG Y
Sbjct: 498 LAAKAGYNVLPANNLDAMAEDIPG-----LGNNRALVRWAFADDTKVGDIHREDVKDG-Y 551
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ Q+ + I + V K A+++S K G + +
Sbjct: 552 IIAQLTKKISEGVASASDARPIVAPILIKEKKAKQLSEKLK---------GSTLEQVAQA 602
Query: 524 LGA--SLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
G ++ T + + G + + F+ P V + YV+
Sbjct: 603 SGQAGNIQTAENVTQEYPALPGQGSEPSVLGAAFALPQGKVSQPIAGDNGVYVIQVTQKD 662
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ +++ L + + L++ + +
Sbjct: 663 IAPALPNYSSYMAPLRNQKLNRASQDLFSALEATADIKDNRA 704
>gi|305433211|ref|ZP_07402367.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter coli JV20]
gi|304443912|gb|EFM36569.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter coli JV20]
Length = 495
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 87/509 (17%), Positives = 174/509 (34%), Gaps = 30/509 (5%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I++ + FL WG D F+++ SS+V VG +K+ ++ F
Sbjct: 1 MLTWMQHHKKYLVVTIWISTIAFVGAGFLGWGAYD--FNLNRSSSVAVVGDEKINYNEFN 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ Q +Q +N E A+ +G++ L +LV L F +D+GL + V
Sbjct: 59 VRYNQIFNYYNQISNGGLNEESAKQLGIENAALSSLVEDKLLLNFAKDLGLGSSENEVIQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+A + F F+ ++ L + KEY + + + +F
Sbjct: 119 ALAETKAFQDPSGDFNKTIYYELLNANNMTPKEYEKTLSNEIIIGKLEQIF----NLPQT 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + L + + ++K++Y K +
Sbjct: 175 DEELKMLGASYFMQDSLNIAKLEQDKENIKVNEEELKKLWNEHKEDY--KTKKVYEISTY 232
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ +KI+ S E E NK KY + + D A LK
Sbjct: 233 YLPVDMQKIDDSKLEEFYNNENNKFKYKDFSGKIMSFEAAKKDVAKDYALAQLKNIANAK 292
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L ++GK DV S K GD GY+I ++
Sbjct: 293 FLELKEGKDKFQKDENITDS----DVYYPLEALSRVKNGDVLRPSEYQNGYIIIKLNKTN 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P T +F E K+++ + + ++E K+ E ++
Sbjct: 349 PVRTKTFDEAKEELMPIYISEQVKKNLEEKAKQNLE---------------NFSGTNIGF 393
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
V K + E F + + ++ + + D + ++ K+ +
Sbjct: 394 VSRDTVRNDAKISNILNEAEFSYFLMNVFNSDQNRSYVILNEDKAMLYKINKQKLDMNPE 453
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K ++ + ++ +++K E +L
Sbjct: 454 KFQQYRIMLNQNLQSLKANEMKQELIEEL 482
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 32/306 (10%), Positives = 83/306 (27%), Gaps = 23/306 (7%)
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
D KK V + P + K + K
Sbjct: 199 DKENIKVNEEELKKLWNEHKEDYKTKKVYEISTYYLPVDMQKIDDSKLEEFYNNENNKFK 258
Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
K E A + + + + ++ K ++ I +
Sbjct: 259 YKDFSGKIMSFEA-AKKDVAKDYALAQLKNIANAKFLELKEGKDKFQKDENITDSDVYYP 317
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+ Y+ +++ ++ P R + +E ++ + + + + +
Sbjct: 318 LEALSRVKNGDVLRPSEYQNGYIIIKLNKTNPVRTKTFDEAKEELMPIYISEQVKKNLEE 377
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD----GISQVFSGPV 557
KA Q + + ++ + + + + VF+
Sbjct: 378 KAKQNLENF-----------SGTNIGFVSRDTVRNDAKISNILNEAEFSYFLMNVFNSDQ 426
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK-----FISYLTQMMNKDLLDSVIAYLKS 612
+ + I N +++K+ K+ EK + L + ++ +I LK
Sbjct: 427 N--RSYVILNEDKAMLYKINKQKLDMNPEKFQQYRIMLNQNLQSLKANEMKQELIEELKK 484
Query: 613 QYSVTV 618
Y + +
Sbjct: 485 TYPIKI 490
>gi|149370006|ref|ZP_01889857.1| peptidyl-prolyl cis-trans isomerase [unidentified eubacterium
SCB49]
gi|149356497|gb|EDM45053.1| peptidyl-prolyl cis-trans isomerase [unidentified eubacterium
SCB49]
Length = 701
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 72/707 (10%), Positives = 184/707 (26%), Gaps = 99/707 (14%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR+ +T + + + F++ + + S + V ++ ++ + F+
Sbjct: 4 LSKIRQ--KTVFLIVIIAMALFAFVLADVLKNGGGSSNKAQTRVATINDTELSQADFMAQ 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ Q++G + A +V + D V L + E +G+ + ++ +
Sbjct: 62 VQST----QQQMGPTATTASAVNV-----VWDREVKRVLLQEEFEKLGIRIEKDQLDAAL 112
Query: 120 AR----SPLFHGKDNKFSHDVFVSRLARE-------GINEKEYIDHYTKMLSRTDVVGMF 168
A + LF + F + ++ Y + + + + + M
Sbjct: 113 AEGLAGNQLFTNELGLFDRNRMNEYISDMKLNNPAAYQQWLTYENGVIQSVLELNYMNMI 172
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAP 227
GG++ + +Q R+ + + Y+ + S + + + ++
Sbjct: 173 KGGLKSTLAEGEQQYRYDNDKINFQYVHVPYTSINDTEVAVSEDEIKSYVNDHAADFEVE 232
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK---------------YFSPEIRTV 272
I Y+ FD ++ I L+ K+ Y +
Sbjct: 233 AQTDIEYVKFDEIASDEDIAAQEASLKEFLTAGKDNGADRVAFKDAENPEVYVNDYSDFT 292
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSIF 330
+ K+ + + ++ + K + D + +
Sbjct: 293 YVDRWYFSKDIPAPLTAADSDLEVGEVVGPYKNVTNFNLTRVLEKRQLADSVQTSHIQVK 352
Query: 331 SLAKKGDFTPVIH--------------------------------------GSFGYVIAH 352
G + ++ +
Sbjct: 353 WAGTLGASSDIVRTKEEAKKRADSIFNVVKRSPSTFAEVASATTDDVRNKANGGELGYLN 412
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK--------RLEEFLALGTSMDEI 404
+ P F ++ T+ V + DE
Sbjct: 413 PNVQLPETISEFVLQADKGDMKLVETEFGYHVLHVTDVKNIQPAYKFAVISKKIEPSDET 472
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
VS G + + + + P + +
Sbjct: 473 INEVFSVSSKFEDAARKGDFTAVANESELTVRPVNKIGSLDANIPGLTNSRQIITWSFDE 532
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE--------GKN 516
++ + V+ ++ K V + + S+K ++ K G +
Sbjct: 533 ETEVGDVKRFNTPNGYVVVRVTRQSPKGVMSVADASAKVTPILRNKKKAALIKEKMNGAD 592
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVF 574
+ I ++ T ++ G + + F N +VV
Sbjct: 593 LQAIATANNVTVQTATAVSMGTPTIPGAGAEPKVVGAAFGKEANETTDVLAGNAGVFVVK 652
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ + F + L + N + VI LK + + +
Sbjct: 653 VLAKVPATDLGNYASFSNQL-DIQNTGVEAKVINALKKKADIEDNRA 698
>gi|302325773|gb|ADL24974.1| PPIC-type PPIASE domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 671
Score = 119 bits (297), Expect = 1e-24, Method: Composition-based stats.
Identities = 69/654 (10%), Positives = 170/654 (25%), Gaps = 41/654 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML I + ++ WV IF + + L D + S + V K+ ++ F +
Sbjct: 29 MLTWINEKAK-WVIVIFAAGIAIGLLAM---DRVPDQGRSYPIGIVNDTKISYTDFDSRV 84
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG--- 117
K + Q + + L ++ + V A + E L A +
Sbjct: 85 KMIVQNQYQNQH----LDDEQYSQLRAQVFSSFVRQALFAEQYEKAELSASVAELKNEFK 140
Query: 118 -------------------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
I + + S S D+ +
Sbjct: 141 RNSDAVRARLVQEAQARLYAIQQQATSQEDLIQRSQAYLASLPKFLTDTTFNKADYDAWI 200
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWF 217
+ + + R + ++ ++ L
Sbjct: 201 ETPAAYRWSAMLSLEDEMKNNSIPARQLQTLVGASVHPTSLEAKWSVERRMTDYELQVAV 260
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + + D Q +Y + + + ++ +
Sbjct: 261 APSSAFVVDSNSVDSVMVAGYFNAHIDSFFVQKDAAQFQYVSIPVEATAGDDASIREYAM 320
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL--GSFSKEYIPDVSLADSIFSLAKK 335
+ ++ + +E+ G + L + +
Sbjct: 321 TLYYQLTDSSSTTTFEDMARVSSEDPGSAEKGGILSEDFVGRGSYVKP--FEEAAFALDS 378
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
G + + FGY I + ++VK + +T +S + K L
Sbjct: 379 GKISEPVRSQFGYHIIKSYGNVKNAKGEVEKVKV-GHILLTVTASSNTIDSLEKILTNIK 437
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
+ ++ + +++ ++ +D + + S+
Sbjct: 438 KDVDAGSDLLTEAQARGLEVKTSEWVSRDGNIGAFGYLKGLASFAWPNENLPKEESEISG 497
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
V + + + S A +R L D+K+ K + + + + + KE
Sbjct: 498 VLRNNKWVVIAKKIGSFTAGERSLPLYYNDIKETLLKQKAGKAAEAYLSSVAAQ-VKEWN 556
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-SGPVEMVKCFPIENGLSYVVF 574
K L T N +G I++V + + +V
Sbjct: 557 PADTAAKIEKVELETKNASVDGFVPGFGYGNAQIARVVGKAKAGEWTAPVVAENGAVMVK 616
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDL---LDSVIAYLKSQYSVTVHDNLIQR 625
V+ + ++ + + + + L++ V + +L R
Sbjct: 617 VVSKKTPKVEEVEEAIKQDVDNSYRFGVMTAFNDYVTSLEASTPVKSNLDLFYR 670
>gi|68171424|ref|ZP_00544815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia
chaffeensis str. Sapulpa]
gi|67999166|gb|EAM85825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ehrlichia
chaffeensis str. Sapulpa]
Length = 408
Score = 119 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 64/408 (15%), Positives = 144/408 (35%), Gaps = 7/408 (1%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALF--SVSGSSTVVSVGRQKVPFSSFINSWKQ 62
I S+ + K L++L + + F S + + +G +K+ + +++
Sbjct: 3 IHMKSKAFFVKPLLIILVCSLVFIAFGASFFPGSFNNEKYIAKIGHEKLSLQDYTSAYHD 62
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
EL I + + E+ + L+ L+ L +F + + L+ + I
Sbjct: 63 ELRYIQHVLNRPLTEEQIAQFNIKLSTLNKLIENKVLTKFADSLNLKVGENSILNHIKSI 122
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ- 181
F ++ F F L+ G+ E+ YI+ K T ++ G + +
Sbjct: 123 KFFQDENGNFDKTKFNIGLSNAGLTERLYINKLEKAFPITMLMSCLFSGTQNTYTQYHPE 182
Query: 182 --AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ +++ V+ N + + K + I +
Sbjct: 183 LIKQILQNLHQARTIDVIEISPTTNDISVPNIDELKKLYEEKRKSGNLTFPESRVIEYVT 242
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ E I +N + K K + + + + +
Sbjct: 243 IDHENFINQTNVTQEEIDNKIKADELDEQRDIFNLVFSTKNEAETALKALNEGTDFDSIV 302
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+L +I+L + K +P+ K+G+ +P++H FG+ I + NI
Sbjct: 303 TNIAHTTLDNITLFNIVKNTLPNDIRNQ--VFSLKEGEISPILHSMFGWHIIKIKNIHKI 360
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
T E+ + IA ++ KA++ + + + + + + GTS+ EI+
Sbjct: 361 STKDLAELSEKIAQNIKKKKATDLLYTEIQAINDKINNGTSIQEIAES 408
>gi|313681990|ref|YP_004059728.1| hypothetical protein Sulku_0862 [Sulfuricurvum kujiense DSM 16994]
gi|313154850|gb|ADR33528.1| hypothetical protein Sulku_0862 [Sulfuricurvum kujiense DSM 16994]
Length = 488
Score = 119 bits (296), Expect = 2e-24, Method: Composition-based stats.
Identities = 69/419 (16%), Positives = 138/419 (32%), Gaps = 18/419 (4%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ +++ + V I++ + F+ WG + + V VG + +
Sbjct: 1 MITWMQRHRKYLVITIWISTIAFIGAGFVGWGQYNY---GDKAGAVAKVGDISITSAELQ 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
S+ +Q + ++A+ GL ++ L LV+ A + GL +W
Sbjct: 58 KSYSNLFNQYNQLFQGKFDEKQAQQFGLQRQALRQLVNQALVLNLANSYGLTVTDQELWD 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I F KD F + L + + KEY + K L + + G++P
Sbjct: 118 VIKSQSAF-SKDGTFDKSTYAEVLKQNRLTIKEYEESMKKELLIQKTLYLLSSGVKPIEE 176
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
S P++A L ++EK +++ ISY+
Sbjct: 177 NTLAD----ALGVSDKISYKILTPDMISLAPTDAELKAFWEKRSGDFKTTPSYEISYVTQ 232
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFPNQKEADEAFQSLKKGKKF 296
+ +D + K Q ++ E ++L+ +
Sbjct: 233 TPITAAPSQKEISDYYDINRQMLKNGEGKVLSLQEAQPIIVAALNEKATEKEALRLYIDY 292
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+ + + G ++ L I L+ + F S GYVI + +
Sbjct: 293 KKGSLKPGMKPQTATVTKSVSP--FAPELTKEITELSTEKAFLKPRKVSNGYVIVKLDKM 350
Query: 357 KPSFTVSFQEVKKDIA----NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P+ +++E K D+ N + TK E + YK + E ++ +
Sbjct: 351 DPARPKTYEEAKTDVMALYLNDTKKTKLQELAQNSYKTFSGTTTDYLTRKESAKIAGLS 409
>gi|312131757|ref|YP_003999097.1| ppic-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
byssophila DSM 17132]
gi|311908303|gb|ADQ18744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
byssophila DSM 17132]
Length = 709
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 59/717 (8%), Positives = 186/717 (25%), Gaps = 113/717 (15%)
Query: 3 EIIRKASRTWVAKIFLVVLFVPFLIWG--LSDALFSV--SGSSTVVSVGRQKVPFSSFIN 58
IR+ ++ VA + + + + F++ G ++ + S+ V + + F F N
Sbjct: 5 NKIRE--KSGVAVVVIAIALILFIVGGDFVAGSKGGGLFGNSNAVGEINGTTIDFQQFAN 62
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ + +G ++ + +++ + L+ + ED+G+ +
Sbjct: 63 LVEGQRMQYEASVGR--SANEQEQAQIREQVWEKLIFEHVYSEAFEDLGITVSDEELREM 120
Query: 119 IARSPL--------FHGKDNKFS---HDVFVSRLAREGI------NEKEYIDHYTKMLSR 161
+ F ++ F H F++ A + + + R
Sbjct: 121 VQGPKNIHPFVKQQFSDQNGNFDATTHANFIAAYANNSMPAEQRIMWDNFKRELRDVRKR 180
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKY 220
+ + S Y+ + + S+ + +F K+
Sbjct: 181 EKYANLLNSSSYITKAEAKAEYYNTTNKASGKYLYVPFYSVADSTVKVSDGEIKSYFSKH 240
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
KD++ A + + + Y+ F + ++ ++L+ + + + + N+
Sbjct: 241 KDDFNAYDSRSLVYVTFSLLPTKEDSVALMNDLR--------ELAKGLAAAPDPVAYANE 292
Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-VSLADSIFSLAKKGDFT 339
+ + G +L ++ +G F + + +
Sbjct: 293 NSDIKTPGVREAGDLSPELKSTLASTIEGGLVGPFKEGTAYSIHKFLGTEVDEHYTARAS 352
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
++ + + + + K + + + + +
Sbjct: 353 HILFRADSTMTQEQRDEAKKKALEILAQAKSGMDFAFLARQFGSDGTAQQGGDLGSFKND 412
Query: 400 SMDEISRR-------------------EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-- 438
+ + + K + ++
Sbjct: 413 GTMVKAFEDAIFSFSGTGVLPNLVTTDFGYHIVKVTEPKSNLKYKLATITKELHVGDEGS 472
Query: 439 -----LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP--ARDRKLEEVLTDVKKDWK 491
+ + A D S + + P L V+ +
Sbjct: 473 NLVFQKASELMNSAKSIKDLEEAAKKDNSIVLFNAENVQPGATVVNTLRNARELVQWAYG 532
Query: 492 TVKTAEEVSSKA--------------------------NQLVLEYSKEGK---------- 515
+V+ + L+ + K
Sbjct: 533 KDAKVGKVADRVFVLEDNYVVAALKSAADKNDPKAEDFKDLIAARIRNEKKAELITKKLG 592
Query: 516 ----NFRDIGKNLGAS--LLTTNQINRMDN--ENKFFGYDGISQVFSGPVEMVKCFPIEN 567
+F +I K GA + ++I + F + ++F +
Sbjct: 593 DGKGSFEEIAKKYGAGALIEEVSEITLQTGMLNSAGFDPVAVGKLFGLKPNTRSKVFTGD 652
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQM---MNKDLLDSVIAYLKSQYSVTVHDN 621
+++ + + + + + Q + + + + L++ + +
Sbjct: 653 SGVFIMENTAKVVAPEIADYSAYKAQIQQRSFGLGGMIGEEI---LRANAKIEDNRA 706
>gi|310820639|ref|YP_003952997.1| peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1]
gi|309393711|gb|ADO71170.1| Peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1]
Length = 519
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 75/522 (14%), Positives = 174/522 (33%), Gaps = 43/522 (8%)
Query: 8 ASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSV----GRQKVPFSSFINSWKQ 62
+R ++ + +V + V F + +G F V S +++P F +
Sbjct: 2 NARKVLSLVGIVAIAVVFTLQFGPGSTGFGSGRGPVVPSAVAVVNGKEIPLRDFSRVYAG 61
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+L + + G + AR L +++D LV+ L Q E G+ + I +
Sbjct: 62 QLNSLRNR-GVPIPESYARQS-LPSQVMDQLVTRELLSQAAERHGINPSDDELRKLIHEN 119
Query: 123 PLFHGKDNKFSHDVFVSRLAREG--INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
FH KD +F+ + + L K + ++ ++ + + G + + +
Sbjct: 120 ADFH-KDGQFNFEQYKRALRDYYRTTEPKYEEELRRQLAAQKMLQVVNSGAVVSDDEVRA 178
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ ++ + + V L + + P+ A L ++ + + D
Sbjct: 179 RYEKDANQAKVVFARFLPTMYAAQVPAPTPAQLEEFRKAHNDEISTYYESNRFMYQQ--- 235
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ + +Q + + + GK F +A
Sbjct: 236 -------------AERAKARQILVKLAPDAAAQQKAEAKSRAEALHKEVTEGGKDFATVA 282
Query: 301 EEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
E+ + S LG + + + +LA+++F+LA G + I G+ + V
Sbjct: 283 RERSEDPGTKASGGDLGWVERASL-EPTLAEAVFALAPNG-VSQPIETKLGWHVVKVEEK 340
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYK----------RLEEFLALGTSMDEISR 406
+ + +E +IA + + ++++ + + + L + +
Sbjct: 341 QAAQDKKLEEAAPEIATTLYKQQKAKELAKAAAEKALASLKGGQTLQQLFPPEKEGQPAL 400
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ V+ G+ V + L F P D L +G ++
Sbjct: 401 QRFETETRPEAVETGSFTAGGESVPYLGLAPALSTAAFSAPGPQVLDQVFPLSEG-FVVA 459
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
Q+ E + D + ++++ + K E S L
Sbjct: 460 QVTERVKPSDETFTQKKDELREQTRRAKQIEMTESFLKALRE 501
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 63/468 (13%), Positives = 130/468 (27%), Gaps = 36/468 (7%)
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN-YRAPEYKRISYILFDVHEK 242
R Y + + +L+Q E++ N K I +
Sbjct: 67 RNRGVPIPESYARQSLPSQVMDQLVTRELLSQAAERHGINPSDDELRKLIHENADFHKDG 126
Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
+ E L+ Y + KY R + + + ++ + A +
Sbjct: 127 QFNFEQYKRALRDYYRTTEPKYEEELRRQLAAQKMLQVVNSGAVVSDDEVRARYEKDANQ 186
Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
+ ++ + F A + + + V
Sbjct: 187 AKVVFARFLPTMYAAQVPAPTPAQLEEFRKAHNDEISTYYESNRFMYQQAERAKARQILV 246
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
++A KE + ++F + E K DL V+ A
Sbjct: 247 KLAPDAAAQQKAEAKSRAEALHKEVTEGGKDFATVARERSEDPGT-KASGGDLGWVERAS 305
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
+ L P + G ++ V+++E A+D+KLEE
Sbjct: 306 LEP-------------TLAEAVFALAPNGVSQPIETKLGWHV-VKVEEKQAAQDKKLEEA 351
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG---KNLGASLLTTNQINRMDN 539
++ + A+E++ A + L K G+ + + K +L R +
Sbjct: 352 APEIATTLYKQQKAKELAKAAAEKALASLKGGQTLQQLFPPEKEGQPALQRFETETRPEA 411
Query: 540 ENKF-------------FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
+ FS P V +VV +VT +
Sbjct: 412 VETGSFTAGGESVPYLGLAPALSTAAFSAPGPQVLDQVFPLSEGFVVAQVTERVKPSDET 471
Query: 587 ----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
KD+ + ++ +S + L+ +V ++ IQ +
Sbjct: 472 FTQKKDELREQTRRAKQIEMTESFLKALRETGTVVENNEAIQTIVGAS 519
>gi|213024001|ref|ZP_03338448.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 215
Score = 118 bits (295), Expect = 3e-24, Method: Composition-based stats.
Identities = 44/216 (20%), Positives = 93/216 (43%), Gaps = 5/216 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I +P F D KF ++ + + + + G+ +Y L+ ++ G
Sbjct: 120 AIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQLINGVAGTDFMLKG 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
D+ + R V V++ + A ++ +
Sbjct: 179 ETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEV 214
>gi|261417144|ref|YP_003250827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261373600|gb|ACX76345.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 643
Score = 118 bits (294), Expect = 3e-24, Method: Composition-based stats.
Identities = 69/654 (10%), Positives = 170/654 (25%), Gaps = 41/654 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML I + ++ WV IF + + L D + S + V K+ ++ F +
Sbjct: 1 MLTWINEKAK-WVIVIFAAGIAIGLLAM---DRVPDQGRSYPIGIVNDTKISYTDFDSRV 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG--- 117
K + Q + + L ++ + V A + E L A +
Sbjct: 57 KMIVQNQYQNQH----LDDEQYSQLRAQVFSSFVRQALFAEQYEKAELSASVAELKNEFK 112
Query: 118 -------------------EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
I + + S S D+ +
Sbjct: 113 RNSDAVRARLVQEAQARLYAIQQQATSQEDLIQRSQAYLASLPKFLTDTTFNKADYDAWI 172
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWF 217
+ + + R + ++ ++ L
Sbjct: 173 ETPAAYRWSAMLSLEDEMKNNSIPARQLQTLVGASVHPTSLEAKWSVERRMTDYELQVAV 232
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + + D Q +Y + + + ++ +
Sbjct: 233 APSSAFVVDSNSVDSVMVAGYFNAHIDSFFVQKDAAQFQYVSIPVEATAGDDASIREYAM 292
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL--GSFSKEYIPDVSLADSIFSLAKK 335
+ ++ + +E+ G + L + +
Sbjct: 293 TLYYQLTDSSSTTTFEDMARVSSEDPGSAEKGGILSEDFVGRGSYVKP--FEEAAFALDS 350
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
G + + FGY I + ++VK + +T +S + K L
Sbjct: 351 GKISEPVRSQFGYHIIKSYGNVKNAKGEVEKVKV-GHILLTVTASSNTIDSLEKILTNIK 409
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
+ ++ + +++ ++ +D + + S+
Sbjct: 410 KDVDAGSDLLTEAQARGLEVKTSEWVSRDGNIGAFGYLKGLASFAWPNENLPKEESEISG 469
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
V + + + S A +R L D+K+ K + + + + + KE
Sbjct: 470 VLRNNKWVVIAKKIGSFTAGERSLPLYYNDIKETLLKQKAGKAAEAYLSSVAAQ-VKEWN 528
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-SGPVEMVKCFPIENGLSYVVF 574
K L T N +G I++V + + +V
Sbjct: 529 PADTAAKIEKVELETKNASVDGFVPGFGYGNAQIARVVGKAKAGEWTAPVVAENGAVMVK 588
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDL---LDSVIAYLKSQYSVTVHDNLIQR 625
V+ + ++ + + + + L++ V + +L R
Sbjct: 589 VVSKKTPKVEEVEEAIKQDVDNSYRFGVMTAFNDYVTSLEASTPVKSNLDLFYR 642
>gi|255601607|ref|XP_002537715.1| rotamase, putative [Ricinus communis]
gi|223515366|gb|EEF24668.1| rotamase, putative [Ricinus communis]
Length = 396
Score = 118 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 61/405 (15%), Positives = 138/405 (34%), Gaps = 39/405 (9%)
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA-------------FQ 288
+ + ++E + YE+N K+ E R ++ + D A +
Sbjct: 1 MITSMRVGDEEAKKFYEENAAKFQGDEERRASHILVTFNGKKDAAAKAEAKKKIDEILAE 60
Query: 289 SLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
K KF +LA++ + + LG + + + G + I
Sbjct: 61 VKKSPDKFAELAKKYSQDPGSAANGGDLGFVKRGLMVKP--FEDALFGMSPGSISGPIET 118
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FGY I ++ + SF +VK I ++ KA K E + ++ +
Sbjct: 119 EFGYHIIKLNEV-KGAAQSFDQVKGQIRAELMYQKALAKFSETADNFSNEVYEQSNSLDG 177
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ K + + D+ +D K + ++ KD V + + +
Sbjct: 178 A--AKDFGVQVQKSDWLSRDDAAKFFKSDKLANEIFSDEVRKDKR--NTEAVEVSPNTLV 233
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
++ ++ PA + EV ++ K + A+ + + + + K G
Sbjct: 234 AARVTDARPASLKTFNEVQAGIEDKLKHEQAAKLAIQRGEKTLADLKKGG-------SAG 286
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKVG 582
S T +I+R + + + + F + + G YV+ ++T + G
Sbjct: 287 DISWTTPVKIDRQNP--QGLSDGVMKEAFRMDGSKLPAYVGAAGKDGGYVLIRLTAVEDG 344
Query: 583 ----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
K + + + L + + L+ ++ V+ +L+
Sbjct: 345 LQQLDTDTKKTAATEYEAALAAEYLTTFMKSLRIHANIKVNQDLL 389
>gi|223040376|ref|ZP_03610651.1| WbnF [Campylobacter rectus RM3267]
gi|222878334|gb|EEF13440.1| WbnF [Campylobacter rectus RM3267]
Length = 487
Score = 118 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 93/509 (18%), Positives = 170/509 (33%), Gaps = 38/509 (7%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ ++K + V I+ + + F+ WG D S + S V VG + + F
Sbjct: 1 MITWMQKHRKYLVVTIWVSTIAFVGAGFVGWGAYDLNVSRASS--VAKVGHRNISIQEFQ 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
N + Q +Q ++ ++A +G++ L+ LV+ A L F +D+GL + +
Sbjct: 59 NRYGQLHAYYNQLFDGQLSEKKASELGIENLALEELVNDALLLNFADDLGLGVNDEDIVK 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I F+ + KF +++ + L R I E EY D ++ + +
Sbjct: 119 YIVADQNFYV-NGKFDKELYKNTLKRARITESEYEDSLKNVILLDKLRH----ALNLPAK 173
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D + + + +E+ K++Y+ ++
Sbjct: 174 EQDINMLTASFLMQDKISMQVVEAATDEIKIDEDAVKKLWEERKNDYKTMTEFKLDTKFI 233
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + EL Y +NK +Y + + E ++ D + KK
Sbjct: 234 PTISSD----ANTTELMEFYNENKNEYKGSDDKIKEFEAVKDEVLKDYNLKQTKKVALEE 289
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L ++ + +DIS+ + SL AKKGD GY+I V I
Sbjct: 290 YLKIKKDEKQADISITTLEDN----ASLPIDELKSAKKGDTLKPFEYEDGYMIVKVKEIV 345
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+SF E K I + K E V+ K L E GT
Sbjct: 346 APRVMSFDEAKDQILELYKEQKTQETVEAKAKELLEKGFQGTD----------------- 388
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
G + A E + S + +I E +
Sbjct: 389 ---IGFISRDTVKAESGLSEGEFNIFVNRLFEKSGKKDYVSLGNKAVVYEITEQKLSNSE 445
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K +E + ++ +K E + + L
Sbjct: 446 KEKEYKEIITQNVGYLKNNELIRDLSGAL 474
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 42/303 (13%), Positives = 100/303 (33%), Gaps = 18/303 (5%)
Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
+ + + + + + + K T+S ++
Sbjct: 193 QVVEAATDEIKIDEDAVKKLWEERKNDYKTMTEFKLDTKFIPTISSDANTTELMEFYNEN 252
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
K K +D + E + D ++ K V+++ L + + +
Sbjct: 253 KNEYKGSDDKIKEFEAVKDEVLKDYNLKQTKKVALEEYLKIKKDEKQADISITTLEDNAS 312
Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
L DG YM V++KE + R +E + + +K KT E
Sbjct: 313 LPIDELKSAKKGDTLKPFEYEDG-YMIVKVKEIVAPRVMSFDEAKDQILELYKEQKTQET 371
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
V +KA +L+ + + ++ + + ++ ++++F
Sbjct: 372 VEAKAKELLEKGFQG----------TDIGFISRDTVKAESGLSEGEFNIFVNRLFE-KSG 420
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM----MNKDLLDSVIAYLKSQY 614
+ N VV+++T K+ +++ ++ +TQ N +L+ + L +Y
Sbjct: 421 KKDYVSLGNKA--VVYEITEQKLSNSEKEKEYKEIITQNVGYLKNNELIRDLSGALSKRY 478
Query: 615 SVT 617
V
Sbjct: 479 KVE 481
>gi|83816153|ref|YP_445540.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855]
gi|83757547|gb|ABC45660.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855]
Length = 691
Score = 118 bits (293), Expect = 4e-24, Method: Composition-based stats.
Identities = 77/712 (10%), Positives = 192/712 (26%), Gaps = 113/712 (15%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDA-LFSVSGSST--VVSVGRQKVPFSSFI 57
+ +R+ + + L +L + F +IW L D+ +FS + V +V + +
Sbjct: 4 MNTLRQNT-----GVILWILVLSFGIIWTLQDSDVFSAMNQTNRNVATVNGNPIQNEDYQ 58
Query: 58 NSW---------------------------------KQELGMISQKIGFVVNSERARSV- 83
++ L +++G V ++
Sbjct: 59 RILKRQRQRFQQQMGGDMNPQMESRVRERAYNQVVNQELLQQEMKRLGISVTDSEVEAMV 118
Query: 84 ------------------GLDKKILDNLVSG-ATLDQFIE------------------DI 106
++ ++L N+ S Q+I+
Sbjct: 119 FGENPHPVIRRQFADSTGQINYQLLQNMASNPEARTQWIKLEEFLRRQRRQQKMSSLVQS 178
Query: 107 GLEADHGRVWGEIARS---PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
++ + R +++ S E Y ++
Sbjct: 179 TIQVSEADIKDYYRRQNSSASAQYVALRYARVSDDSITVTESDLRDYYDNNREAYKREKT 238
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
V + + + D+ N + + + S+ + +
Sbjct: 239 VTLQYATTSKEATAEDSSGIAGDLAGLRADFATTENDSLFLLNNASDQDFSSAYRTPDQM 298
Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQ---AEYEKNKEKYFSPEIRTVEQLVFPNQ 280
+ L+ +N + + +Q
Sbjct: 299 NARVADSVYASPEPGRIVGPVFGGGQAHLLKVRDTRPAENDFLHARHILLKTDQADSEVA 358
Query: 281 KEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
SL+ G F ++A S LG F++ + D + A+ G
Sbjct: 359 GRLRAIRDSLEAGAASFAEMARRYSDDGSASDGGDLGWFARGSMVDAFEDAA--FGAEPG 416
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
+ FGY + V D+A + ++A+ + +L +
Sbjct: 417 TLVGPVRSEFGYHLIRVEARASQAVQV-----ADLAYNLSPSRATLS--DKESQLGDLAY 469
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
+ + + + V + Q L + +
Sbjct: 470 FAEEEGAFEEEAQRLGLSVQEVQVETDQSSVPGIGQSAALSQFLESASN----GTISDVI 525
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
L D ++ ++ P R EV + ++ + K + + + + +
Sbjct: 526 ELSD-KFVVAEVTNVTPEGYRSFSEVKSQIRPQVELQKKRAVQTRRMERALAQ-----NT 579
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVF 574
F + + LG L T + + + G + + VF N +++V
Sbjct: 580 FEALPEALGTELRTQSDLTYSTSTVPGLGQEPQFVGTVFGLDEGETSGVVAGNNAAFIVK 639
Query: 575 KVTNSKVGPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ P+ + + + L + + + + IA LK ++ + + ++
Sbjct: 640 TTQKTTPPPLTDQKRKQLRQRLLKQRRQQVSSNWIAALKEDATIKDNRSQLR 691
>gi|315638232|ref|ZP_07893414.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
upsaliensis JV21]
gi|315481768|gb|EFU72390.1| peptidyl-prolyl cis-trans isomerase D,-like protein [Campylobacter
upsaliensis JV21]
Length = 501
Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats.
Identities = 75/510 (14%), Positives = 158/510 (30%), Gaps = 23/510 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL---SDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I + + F+ G+ ++ + +S+V VG +K+ F F
Sbjct: 1 MLTWMQHHKKYLVVTI--WISVIAFVGAGVVGWGAYDYNQNRNSSVAIVGNEKISFVEFN 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ Q G +Q ++ E A +GL L++L+ L F +++GL A+ V
Sbjct: 59 LRYNQIYGYYNQISNGALSEENAEKLGLKDIALNSLIEDKLLLNFAKNLGLWANENEVIQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
E++ + F + F +++ + L + I K Y + + +F + + L
Sbjct: 119 ELSAAEEFQNVNGIFDKNIYYAILKQNNILSKNYEQILGDRIILNKLNKIFEFPAKENEL 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ A F + + I + + + + + +K
Sbjct: 179 QMLAASYFMQDALEIAKITFDKKDLAVDENALKQLWEAHKNDFKTQKSYELSSYFIEAKK 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+++ +E K ++ E ++ E + + K
Sbjct: 239 SNFSQDELRAFYQNENNKFKYKAQDGKILDFELAKEMIIKDLSLEKTKNLANEKF----- 293
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+A K ++ + L AK D I
Sbjct: 294 -VALRNQKDDFQKDFNISEEDQNYPLELLAK----AKNKDILKPIIWQKCENKICKDGFI 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
V+ + R E ++ E A I+L
Sbjct: 349 ILRLNQTNPVRVKNFEEARAEVLPMYYSEIAQKALEEKAQKALPT-------FKGIELEF 401
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
VD K I + F + + V + D + +IK+
Sbjct: 402 VDRNSIKDAKKVSDEILNNAEFSFFLSQVFNTDQNSSYVLINDSKAILYRIKKQKLNPNK 461
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ + T ++ KT+K++E +L
Sbjct: 462 QDFNQYQTMLESSLKTLKSSEIKQELLEEL 491
Score = 56.4 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/307 (10%), Positives = 95/307 (30%), Gaps = 13/307 (4%)
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
K+ D + ++ K T + Y I + + ++ + +
Sbjct: 201 KDLAVDENALKQLWEAHKNDFKTQKSYELSSYFIEAKKSNFSQDELRAFYQNENNKFKYK 260
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
E K + ++ + + + ++ ++
Sbjct: 261 AQDGKILDFELAKEMIIKDLSLEKTKNLANEKFVALRNQKDDFQKDFNISEEDQNYPLEL 320
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ + + ++ +++ ++ P R + EE +V + +
Sbjct: 321 LAKAKNKDILKPIIWQKCENKICKDGFIILRLNQTNPVRVKNFEEARAEVLPMYYSEIAQ 380
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
+ + KA + + + F D A ++ +N + +SQVF+
Sbjct: 381 KALEEKAQKALPTFKGIELEFVDRNSIKDAKKVSDEILNNAEFSF------FLSQVFNTD 434
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-----DKFISYLTQMMNKDLLDSVIAYLK 611
+ + N +++++ K+ P ++ S L + + ++ ++ LK
Sbjct: 435 QN--SSYVLINDSKAILYRIKKQKLNPNKQDFNQYQTMLESSLKTLKSSEIKQELLEELK 492
Query: 612 SQYSVTV 618
Y + +
Sbjct: 493 KTYKIKI 499
>gi|294507423|ref|YP_003571481.1| peptidyl-prolyl cis-trans isomerase D [Salinibacter ruber M8]
gi|294343751|emb|CBH24529.1| Putative peptidyl-prolyl cis-trans isomerase D [Salinibacter ruber
M8]
Length = 691
Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats.
Identities = 79/713 (11%), Positives = 192/713 (26%), Gaps = 115/713 (16%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDA-LFSVSGSST--VVSVGRQKVPFSSFI 57
+ +R+ + + L +L + F +IW L D+ +FS + V +V + +
Sbjct: 4 MNTLRQNT-----GVILWILVLSFGIIWTLQDSDVFSAMNQTNRNVATVNGNPIQNEDYQ 58
Query: 58 NSW---------------------------------KQELGMISQKIGFVVNSERARSV- 83
++ L +++G V ++
Sbjct: 59 RILKRQRQRFQQQMGGDMNPQMESRVRERAYNQVVNQELLQQEMKRLGISVTDSEVEAMV 118
Query: 84 ------------------GLDKKILDNLVSG-ATLDQFIE------------------DI 106
++ ++L N+ S Q+I+
Sbjct: 119 FGENPHPVIRRQFADSTGQINYQLLQNMASNPEARTQWIKLEEFLRRQRRQQKMSSLVQS 178
Query: 107 GLEADHGRVWGEIARS---PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
++ + R +++ S E Y ++
Sbjct: 179 TIQVSEADIKDYYRRQNSSASAQYVALRYARVSDDSITVTESDLRDYYDNNREAYKREKT 238
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
V + + + D+ N + + + S+ + +
Sbjct: 239 VTLQYATTSKEATAEDSSGIAGDLAGLRADFATTENDSLFLLNNASDQDFSSAYRTPDQM 298
Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQ---AEYEKNKEKYFSPEIRTVEQLVFPNQ 280
+ L+ +N + + +Q
Sbjct: 299 NARVADSVYASPEPGRIVGPVFGGGQAHLLKVRDTRPAENDFLHARHILLKTDQADSEVA 358
Query: 281 KEADEAFQSLKKGK-KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
SL+ G F ++A S LG F++ + D + A+ G
Sbjct: 359 GRLRAIRDSLEAGAAFFAEMARRYSDDGSASDGGDLGWFARGSMVDAFEDAA--FGAEPG 416
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
+ FGY + V N + L F
Sbjct: 417 TLVGPVRSEFGYHLIRVEARASQAVQV----ADLAYNLSPSRATLSDKESQLGDLAYFAE 472
Query: 397 LGTSMDEISRREKIVSIDLP-LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
+ +E ++R + ++ D + G+ A L + +
Sbjct: 473 EEGAFEEEAQRLGLSVQEVQVETDQSSVPGIGQGAA--------LSQFLESASNGTISDV 524
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
+ L D ++ ++ P R EV + ++ + K + + + + +
Sbjct: 525 IELSD-KFVVAEVTNVTPEGYRSFSEVKSQIRPQVELQKKRAVQTRRMERALAQ-----N 578
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVV 573
F + + LG L T + + + G + + VF N +++V
Sbjct: 579 TFEALPEALGTELRTQSDLTYSTSTVPGLGQEPQFVGTVFGLDEGETSGVVAGNNAAFIV 638
Query: 574 FKVTNSKVGPVQE--KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ P+ + + + L + + + + IA LK ++ + + ++
Sbjct: 639 KTTQKTTPPPLTDQKRKQLRQRLLKQRRQQVSSNWIAALKEDATIKDNRSQLR 691
>gi|255322620|ref|ZP_05363764.1| conserved hypothetical protein [Campylobacter showae RM3277]
gi|255300181|gb|EET79454.1| conserved hypothetical protein [Campylobacter showae RM3277]
Length = 487
Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats.
Identities = 96/509 (18%), Positives = 175/509 (34%), Gaps = 38/509 (7%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ ++K + V I+ + + F+ WG D S + S V VG + + F
Sbjct: 1 MITWMQKHRKYLVVTIWVSTIAFVGAGFVGWGAYDLNASRASS--VAKVGHRNISIQEFQ 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
N + Q SQ ++ E A +G++ L+ LV+ A L F +D+GL + +
Sbjct: 59 NRYGQLHAYYSQLFDGQLSDENASELGIENLALEALVNDAMLLNFADDLGLGVNDEDIVK 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I FH + KF +++ + L R E EY + ++ + ++
Sbjct: 119 YIIADQNFHS-NGKFDKELYKNTLKRARTTESEYEESLKNVILLDKLRHALNLPANAQDI 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ A + L + +E++K+ Y+ ++
Sbjct: 178 DMLTAS----FLMQDKISIKVVEANADEIKIDEDALKKLWEEHKNEYKTMTEFKLDTKFI 233
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + +EL Y +NK +Y + + E ++ D + KK
Sbjct: 234 PAISSD----ANTNELTEFYNENKNEYKGSDDKIKEFEAVKDEVLKDYNLKQTKKVALEE 289
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L ++ + +D+S+ +F + LAKKGD GY+I V I
Sbjct: 290 YLKIKKDEKQADVSVSTFEDNASLPMDELK----LAKKGDTLKPFEYEDGYMIVKVKEIV 345
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+SF E K+ I + K E V+ K L E D+
Sbjct: 346 APRVMSFDEAKEQILELYKEQKTKEIVEAKAKELLEK--------------GFQGTDIGF 391
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
V +G V + K V L D + + +I E
Sbjct: 392 VSRDTVKAEGGLSEGEFNI-----FVNRLFEKGGKKGYVVLGDKA-VVYEITEQKLTNSE 445
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
K +E + ++ +K E + L
Sbjct: 446 KEKEYKEIITQNVGFLKNNELIRDLTAML 474
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 47/335 (14%), Positives = 110/335 (32%), Gaps = 18/335 (5%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
L+ A++ + + + + + + +
Sbjct: 161 LDKLRHALNLPANAQDIDMLTASFLMQDKISIKVVEANADEIKIDEDALKKLWEEHKNEY 220
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ + K +S ++ K K +D + E + D +
Sbjct: 221 KTMTEFKLDTKFIPAISSDANTNELTEFYNENKNEYKGSDDKIKEFEAVKDEVLKDYNLK 280
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ K V+++ L + V+ L DG YM V
Sbjct: 281 QTKKVALEEYLKIKKDEKQADVSVSTFEDNASLPMDELKLAKKGDTLKPFEYEDG-YMIV 339
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++KE + R +E + + +K KT E V +KA +L+ + +
Sbjct: 340 KVKEIVAPRVMSFDEAKEQILELYKEQKTKEIVEAKAKELLEKGFQG----------TDI 389
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
++ + + ++ ++++F K + + G VV+++T K+ ++
Sbjct: 390 GFVSRDTVKAEGGLSEGEFNIFVNRLFE--KGGKKGYVVL-GDKAVVYEITEQKLTNSEK 446
Query: 587 KDKFISYLTQM----MNKDLLDSVIAYLKSQYSVT 617
+ ++ +TQ N +L+ + A L +Y VT
Sbjct: 447 EKEYKEIITQNVGFLKNNELIRDLTAMLSKRYQVT 481
>gi|57242050|ref|ZP_00369990.1| conserved hypothetical secreted protein, putative [Campylobacter
upsaliensis RM3195]
gi|57017242|gb|EAL54023.1| conserved hypothetical secreted protein, putative [Campylobacter
upsaliensis RM3195]
Length = 501
Score = 117 bits (292), Expect = 5e-24, Method: Composition-based stats.
Identities = 76/510 (14%), Positives = 162/510 (31%), Gaps = 23/510 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL---SDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I + + F+ G+ ++ + +S+V VG +K+ F F
Sbjct: 1 MLTWMQHHKKYLVVTI--WISVIAFVGAGVVGWGAYDYNQNRNSSVAIVGNEKISFVEFN 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ Q G +Q ++ E A +GL L++L+ L F +++GL A+ V
Sbjct: 59 LRYNQIYGYYNQISNGALSEENAEKLGLKDIALNSLIEDKLLLNFAKNLGLWANENEVIQ 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
E++ + F + F +++ + L + I K Y + + + +F + + L
Sbjct: 119 ELSATEEFQNINGIFDKNIYYAILKQNNILSKNYEQILSDRIILNKLNKIFEFPAKENEL 178
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ A F + + I + + + + + +K
Sbjct: 179 QMLAASYFMQDALEIAKITFDKKDLAVDENALKQLWEAHKNDFKTQKSYELSSYFIEAKK 238
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+++ +E NK KY + + + ++ + D + + K
Sbjct: 239 SNFSQDELRAFYQNE------NNKFKYKAQDGKILDFELAKEMVIKDLSLEKTKNLANEK 292
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+A K ++ + L K D I
Sbjct: 293 FVALRNQKDDFQKDFNISEEDQNYPLELLAK----TKNKDILKPIIWQKCENKICKDGFI 348
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
V+ + R E ++ E A I+L
Sbjct: 349 ILRLNQTNPVRVKNFEEARAEVLPMYYSEVAQKALEEKAQKALPT-------FKGIELEF 401
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARD 476
VD K I + F + + V + D + +IK+
Sbjct: 402 VDRNSIKDAKKVSDEILNNAEFSFFLSQVFNTDQNSSYVLINDSKAILYRIKKQKLNPNK 461
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ + T ++ KT+K++E +L
Sbjct: 462 QDFNQYQTMLESSLKTLKSSEIKQELLEEL 491
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/307 (10%), Positives = 95/307 (30%), Gaps = 13/307 (4%)
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
K+ D + ++ K T + Y I + + ++ + +
Sbjct: 201 KDLAVDENALKQLWEAHKNDFKTQKSYELSSYFIEAKKSNFSQDELRAFYQNENNKFKYK 260
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
E K + ++ + + + ++ ++
Sbjct: 261 AQDGKILDFELAKEMVIKDLSLEKTKNLANEKFVALRNQKDDFQKDFNISEEDQNYPLEL 320
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ + + ++ +++ ++ P R + EE +V + +
Sbjct: 321 LAKTKNKDILKPIIWQKCENKICKDGFIILRLNQTNPVRVKNFEEARAEVLPMYYSEVAQ 380
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
+ + KA + + + F D A ++ +N + +SQVF+
Sbjct: 381 KALEEKAQKALPTFKGIELEFVDRNSIKDAKKVSDEILNNAEFSF------FLSQVFNTD 434
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEK-----DKFISYLTQMMNKDLLDSVIAYLK 611
+ + N +++++ K+ P ++ S L + + ++ ++ LK
Sbjct: 435 QN--SSYVLINDSKAILYRIKKQKLNPNKQDFNQYQTMLESSLKTLKSSEIKQELLEELK 492
Query: 612 SQYSVTV 618
Y + +
Sbjct: 493 KTYKIKI 499
>gi|32490901|ref|NP_871155.1| hypothetical protein WGLp152 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166107|dbj|BAC24298.1| ppiD [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 628
Score = 117 bits (292), Expect = 6e-24, Method: Composition-based stats.
Identities = 86/596 (14%), Positives = 204/596 (34%), Gaps = 17/596 (2%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
FS + S ++ + +K+ + F + + ++ + ++L
Sbjct: 33 GTYFSGNNESYIIKINNEKISYDKFQQNMMNFKINNNIND--NLDINEHKLNFFKNQVLL 90
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
++ L Q+ + I L ++ I F + F + S L+ G++ +
Sbjct: 91 KIIENTLLKQYAKKINLIITEEKIKKTIYEISEF-NSEIGFDLNKLKSLLSDIGLSLDSF 149
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
I L +++ + ++ Y + R + + I S++
Sbjct: 150 IKEIYDQLLINEIINIIDITSFLLPYEIENILLQYLQERHIKLATFDKTQEININSVSDS 209
Query: 212 VLTQWF--EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
+ +K I + + + KI + E+Q Y KN +K+ PE
Sbjct: 210 EAEAEYKLNSHKYVTPKKFNINYLKININDIKNKDKIIAKSKEVQEWYLKNIKKFTLPEK 269
Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-LSDISLGSFSKEYIPDVSLADS 328
+ + F ++KEA +K K F ++A+ + K S ++ G +
Sbjct: 270 KRYSIIQFDSEKEAIFYLNKIKNEKDFFEIAKNKSKDIFSSVNNGDIGWIQEDFIIEEIK 329
Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
I +L K + + +I S GY+I ++ I P + K+I N ++ K+ +
Sbjct: 330 IANLKNKNEISKIIKSSSGYLIIMLTEIIPKVEQDLKYFYKEIENYIKEEKSIKIFNNYI 389
Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
++++ + + + + + + ++ L
Sbjct: 390 EKIKILAKDNKYSFND-LKNDFRNYYINNTGWIDEKNIINIFNSFEIDQEKLNINNINKC 448
Query: 449 PLS-KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
+ K + + ++ I + + + EV +KK K + K +
Sbjct: 449 NFNIKLDQFHIKNDEFLVFCINDFLDKKIISFSEVKDQIKKQVLHDKFILQSKIKLKNAI 508
Query: 508 LEYS-KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+E K N ++ K G L ++ D+++ +F+ K E
Sbjct: 509 IELESKNSPNIEEVMKKFGLIFLEKKTLDLFDDKSD---EKLKYLIFNMKEPNYKKKSYE 565
Query: 567 ---NGLSYVVFKVTNSKVGPVQEKDK--FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ ++ + + DK I+ L +K +D+++ LK++ +
Sbjct: 566 IFIDNEKILLVILDKITQKRINSVDKNILINQLKNKNSKLDIDALLNNLKNKSKIK 621
>gi|218515978|ref|ZP_03512818.1| peptidyl-prolyl cis-trans isomerase D signal peptide protein
[Rhizobium etli 8C-3]
Length = 212
Score = 117 bits (291), Expect = 8e-24, Method: Composition-based stats.
Identities = 59/211 (27%), Positives = 100/211 (47%), Gaps = 7/211 (3%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D G D GKEV IP K+QLL F + + + + + Y+W ++E P RDR
Sbjct: 1 DATGADKDGKEVKDIPAKQQLLGEAFKTEVGVDAP-PLPIGNDGYVWFNVREVTPDRDRP 59
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
+ EV +DW + E++ KA++L E K G DI LG ++ + + I R
Sbjct: 60 IAEVREKAVEDWTAEQQKAELAKKADELKAEAQK-GTALADIATPLGIAVESKSGITR-S 117
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYL 594
++ G G+ FSGPV+ V + + ++ KVT P + +D ++ +
Sbjct: 118 TDDPVLGRAGVKAAFSGPVDTVASAVGADPSTQILMKVTEVNSQPTGDVLNNRDAQLTAM 177
Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
D+LD ++ L++QY V+ L ++
Sbjct: 178 ANAAGDDILDQMVNLLQTQYGAQVNQTLAEQ 208
>gi|78187764|ref|YP_375807.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium luteolum
DSM 273]
gi|78167666|gb|ABB24764.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium luteolum
DSM 273]
Length = 701
Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats.
Identities = 74/702 (10%), Positives = 174/702 (24%), Gaps = 92/702 (13%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
+ +R + + L + WG++ + + SV VP+S + +
Sbjct: 4 MTSMRDKT-HIILYTLLAAFLALIVFEWGMNFSGPAGRNGQ-AGSVNGTPVPYSEYEEIY 61
Query: 61 KQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+Q Q G ++ E +GL ++ + LV L++ + + + I
Sbjct: 62 RQYSENYRQSNPGADISPE--AELGLKEQAWNTLVDQKLLEEQFRKFRITIEDSEILAAI 119
Query: 120 ARSPLFHGKDNKF--------SHDVFVSRLA--REGINEKEYIDHYTKMLSRTDVVGMFV 169
R F S R + D + L ++
Sbjct: 120 QRPDPPQIIARNFMDPATGAIDRARLDSARKDPRNKEMWVQVEDIIRRELKIQKLLRALG 179
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNYRAP 227
++ +D+ + S +I + + A + L ++++++K+ + P
Sbjct: 180 TMAHVTDREVDELVLRQYTRMSASFIPVPYSYAGDDASFPVKDDELRKYYDEHKEMFLQP 239
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFPNQKEADEA 286
+ Y+ F + K ++ EL++ S + + D +
Sbjct: 240 PSRSAEYVFFPLVPSAKDSLLARSELESLRGDFASASSDSAFVSVQSDEPGGADRTFDRS 299
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
S + G + + + + + + +A+ + +
Sbjct: 300 VFSPEAGSAIFGSPAMRPGGMIGPVADQGAYRLLKVKQIVTASQPVARASHILIGFNPAN 359
Query: 347 GYVIAHVSNIKPSFTVSF-----------QEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
+ + + + + + +
Sbjct: 360 RAEAQQAGAKAQDILRQLKGGASFADLARRYSADIGSARSGGQLGWFRSERMVPEFADAV 419
Query: 396 ALGTSMD---EISRREKIVSIDLPLVDFAGKDVKGKEVAAIP------YKEQLLFRVFGK 446
++ R + I + D + P ++
Sbjct: 420 FSAAPGTVVGPVATRFGLHIIKVEGFDRSAFVGSALSRNIRPSTETAESVRRIAMAFQMD 479
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW---------------- 490
T + + +
Sbjct: 480 AKDKGFAKTAETEKRE--IAKTGDFTRNMPIPSIGYSEKIASFAFKAGEGDLSDVLDTER 537
Query: 491 ---------KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL----------------- 524
K ++ + + K K I K L
Sbjct: 538 GFYVMSLTGKNDTGYRKLDDELKSAITTELKREKKGEFIKKKLQALVSVPGATLQKIAAA 597
Query: 525 --GASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
SL T + I D +G + + PV+ + P+ + VF V
Sbjct: 598 DKNFSLFTADDIRWSDGFIPGYGVDRPLVEAMAGMPVQKL-SLPVRGNDGFAVFMVQKKT 656
Query: 581 VG----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ P EK L QM + L A ++ Q +
Sbjct: 657 LPEGLDPALEKAAVAPRLLQMKQEQLFSEYFASIRKQAKIED 698
>gi|225012326|ref|ZP_03702762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
bacterium MS024-2A]
gi|225003303|gb|EEG41277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
bacterium MS024-2A]
Length = 704
Score = 116 bits (290), Expect = 8e-24, Method: Composition-based stats.
Identities = 75/712 (10%), Positives = 189/712 (26%), Gaps = 104/712 (14%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
L IR+ R+ + + + F+I G+ S + V + +V F
Sbjct: 4 LGKIRQ--RSIFLILVIGMALFAFVISGVFGSNSASTGPTDPVAVINDDEVDIDFFRQMV 61
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q + VN + + + DQ E++G++A ++ I+
Sbjct: 62 EQTERTYNYSTLQSVNL-----------VWNQALRNTIFDQQFEELGIDAGKDQLEQIIS 110
Query: 121 ------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML--------SRTDVVG 166
+P F + F VF +A+ + +++ R +
Sbjct: 111 SDESVISNPSFQNEAGFFDFGVFTDFIAQMKVENPVSYENWKIQEQSIIGVAKQRIYLDL 170
Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
+ + + ++ + S+A + + ++++ +++
Sbjct: 171 IKSSSGITEAEAKADYHSKNDNINIQYVQIPFDVISDSLVNVSDAEVKNYIKEHEADFKR 230
Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
+ I Y+LFD E + L A E+ ++ + + AD
Sbjct: 231 ESSRNIQYVLFDEAPTEDDLSSIRLRLDALKEERVAYNDVSKLTDTLEGFRSTKNIADFI 290
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV----------------------- 323
+ ++ + A + + L SK +
Sbjct: 291 DEYSEESFDSVYRARGEFNNEYADILFKLSKGEVFGPYRDRGDFKISRLIDRKVNASLRA 350
Query: 324 -----SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
+ + + ++ V F +E
Sbjct: 351 SHILIAFNGATRAPSEVSRTKAEAKSEANRVYKMARRASSDFEALVREYSDGPTKTRGGD 410
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
+ + + L F + + + + D + VAA ++
Sbjct: 411 LGFFREGDMAQELFNFTNKNKVGNIGLVETEFGFHIVKVTDKDDLALIADVVAAAVPSDK 470
Query: 439 LLFRVFGKDDPLSKDHTVALPDG------SYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
VF D Y+ +K+ + W
Sbjct: 471 TANEVFRNATQFEMDSNEDGDFNAIAEKSKYVVRPVKQITSLEENLPGLFQQRNIVRWTF 530
Query: 493 VKTAE----------------------------------------EVSSKANQLVLEYSK 512
+ + + K +L+ + K
Sbjct: 531 EEDTKVGDIKRFSIASGGYAVVQLTAKVKEGLADIDEVGTQVRKILTNKKKAELIKKQFK 590
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLS 570
+ + +N + T + IN+ + G + + F+ +
Sbjct: 591 DKTTLDALAENEEFEIETASAINQRNPSIVGAGNEPYIVGVAFAMEEGTLSNLITGEYGV 650
Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
Y V + + +++ + + ++ + ++V L+S S+ + L
Sbjct: 651 YKVLLMKKNTAEELEDYTAYTEQMMTELSARITENVFKALESVASIDDNRAL 702
>gi|237752705|ref|ZP_04583185.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376194|gb|EEO26285.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 485
Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 64/468 (13%), Positives = 163/468 (34%), Gaps = 17/468 (3%)
Query: 1 MLEIIRKASRTWVAKI---FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ ++K + + I + L F+ WG + S+ VG +++
Sbjct: 1 MIGFMQKHKKYLIVTIWISAIAFLGAGFVGWGAYSF---SNTSNAAAVVGDRQITIDRLQ 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + +Q +++E+A+ +G++++ L+ L+S A + + D+GL +
Sbjct: 58 REYARLYNVYNQLFNGNLDNEQAKKLGIEEQALNTLISRALMLNYAHDVGLRISQEEIIQ 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ +F + KF ++ LA + K++ + L ++ +
Sbjct: 118 TLTAMDIFQN-NGKFDETIYKRLLADNQMRPKDFEE----ELGEGILLQKLDALLEIPLT 172
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+ + +P+ + +++E+ K + Y +
Sbjct: 173 PLEIQTISEAVFSEDHLKIQVLNDSEITFNPTEEEIKKYWEENK----DIYQTQRGYEVL 228
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
V K I + N+ L+ YE K ++ + + ++ A +K
Sbjct: 229 KVSVKSDSIPVDNETLKKHYEDFKNQFLDENGQLLPFDKAKDKVIAHYKSSQAEKESLKE 288
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
++ +G++ SL + + D + + S AK+ + I ++ + I
Sbjct: 289 YISLRKGENKKAESLVIYEGDSNYDTEFLN-LLSQAKEQETLKPIKVKGEFITIKIQKII 347
Query: 358 PSFTVSFQEVKKDIANQMRI-TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
PS S++ K+D K ++ L +F + + + ++
Sbjct: 348 PSEPKSYEAAKQDAIEDFITLRKTQLLEEKAALLLADFKGVDVGYVSRENKIALKGLNSQ 407
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ K A + ++ D K+ + + ++
Sbjct: 408 ESQDFITQLFNKTEAKGYILLKNKVILYEILDQRLKNSDIITQNLDFI 455
>gi|330721963|gb|EGG99901.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
IMCC2047]
Length = 154
Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 65/153 (42%), Gaps = 1/153 (0%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++ I+ S+ +AKI + ++ + F ++G+ + + GSS V ++ + +
Sbjct: 3 IQSIKDNSQGMIAKIIVGLIVLTFALFGVDAIVGNSGGSSKAAVVNGDEISEFELLRAAD 62
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ Q++G + + + + L+ L+ L Q ++ + +GRV I +
Sbjct: 63 FFKRRMLQEMGANADPDLIDDQLVRARALEELIQRQLLLQAADEQAIFVANGRVDQAILQ 122
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
+ F + F +++ L + +Y H
Sbjct: 123 NESFQ-TNGVFDRNIYEYTLRNLQMTPVDYKAH 154
>gi|222824176|ref|YP_002575750.1| peptidyl-prolyl cis-trans isomerase D [Campylobacter lari RM2100]
gi|222539398|gb|ACM64499.1| conserved hypothetical protein, putative peptidyl-prolyl cis-trans
isomerase D [Campylobacter lari RM2100]
Length = 492
Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 88/499 (17%), Positives = 165/499 (33%), Gaps = 35/499 (7%)
Query: 1 MLEIIRKASRTWVAKI---FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++ + V I + + F+ WG F+ S++V VG +K+ + F
Sbjct: 1 MLTWMQHHKKYLVVTIWISVIAFVGAGFVGWG--SYDFNTDRSNSVAKVGDEKISYDEFN 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ Q G SQ E+A+ GLD + ++ L+ L + + +GL +
Sbjct: 59 LKYSQLFGYYSQLNNGNYTQEQAQKDGLDTQAINELIQEKLLLSYAKTLGLNVSEEEIAY 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++A +FH F +++ + LAR K Y L ++ +
Sbjct: 119 DLAHQKIFHNASGVFDKNLYYNLLARNNYTPKTYEKIIHDEL----LLKKINAILNLQIK 174
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ V + L Q +EK K+ Y+ ++
Sbjct: 175 PNELDMFGASFLMQDSLKVQAIKLDNKNITMDEKELKQTWEKNKELYKTQRSYELATYFL 234
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ I+I + E+QA YE+NK Y + + ++ D LK
Sbjct: 235 NPD----IIKIDDKEIQAYYEENKNDYKDFAGKILSLEQSKDKVIKDLKLSKLKLKANES 290
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+A + + D ++ DV AK+ DF GY+IA V I
Sbjct: 291 YVALRKNELNFDKNITISDA----DVYYPLENIQKAKENDFIKPFKFENGYMIAKVIKIN 346
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P T++F++ K +++ K ++E K +
Sbjct: 347 PIQTMTFEQAKNEVSKLYIKEKTKALLEEKAKIALDNFQGID------------------ 388
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ +D + +K + L D + +I +
Sbjct: 389 IGTYSRDSSKNAKVGEMMNDTEFSEFLMHVFDSNKAKSYVLFDDKAIVYEITKQTLENKN 448
Query: 478 KLEEVLTDVKKDWKTVKTA 496
K E +++ K K A
Sbjct: 449 KEEIYKFIIEQSAKQTKQA 467
>gi|326334983|ref|ZP_08201183.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sp.
oral taxon 338 str. F0234]
gi|325692788|gb|EGD34727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga sp.
oral taxon 338 str. F0234]
Length = 707
Score = 116 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 76/610 (12%), Positives = 170/610 (27%), Gaps = 54/610 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
LE IRK RT + + + F+I G+ + V K+ + F + +
Sbjct: 4 LEKIRK--RTVFLILVIGLALFAFVISGIFSR-TKTPDQLVIGEVNGDKISYLEFSSQVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
L + IG + + + LDQ E +G+ ++ I
Sbjct: 61 NTLRNMGGSIGQAY---------VVNALWQQTIQSKILDQQFEKLGISVGKDQILSIISK 111
Query: 120 ----ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM-------LSRTDVVGMF 168
A++P F FS F +A+ + + + R + +
Sbjct: 112 VPQYAQNPQFLDDKGVFSPAKFGQVIAQIKQSNPTVYKQWQQEEKSYFDTAKREIYLSLI 171
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAP 227
G+ + + A + ++ Y+ L S+ + + + +K Y+
Sbjct: 172 RAGLGVTLKDGEDAYHQENDKVTIKYVTLPYSSIPDEQIKISDNEIQDYVKAHKKQYQQK 231
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ + + ++L + + +L+A + + F
Sbjct: 232 DMRNLQFVLASEVASPEDKKAIEQDLKALNNPRILYNNQTQKSDTLPGFSQVPLKDIAEF 291
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ F L SK+ +P G+
Sbjct: 292 VNENSDTPFDSL--------------YVSKDKLPVN--FADTLYNLSIGELYGPYQDGNA 335
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y + + P+ V + + A + KE+ K E +
Sbjct: 336 YKYTRMLSKIPNGEVRASHILIAYQGSLPGNDAITRTKEEAKAKAEGILAQIKAGGDYTA 395
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
D + G F + + V G ++
Sbjct: 396 L----AQANSDDASNAQNGGDLDFFSRGMMVQPFNDYVFHAKVGDIGLVETNFGFHI--- 448
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
R+ ++ T + + T + V +K + + K K F + + G
Sbjct: 449 ---IKITDLREGVKLATITRNIEPSAATRDAVYTKITEFDAQAIKNPKEFAALAQKAGYD 505
Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+L N + + + G + F ++ + Y+V ++T +
Sbjct: 506 VLPANNLEALAEDIPGLGDNRPLVKWAFEKDTKVGDVRRFDIKDGYIVAQLTKKIEAGLA 565
Query: 586 EKDKFISYLT 595
+ + +
Sbjct: 566 SPSEARAQVA 575
>gi|224824985|ref|ZP_03698091.1| putative peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
2002]
gi|224602656|gb|EEG08833.1| putative peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
2002]
Length = 277
Score = 116 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/267 (15%), Positives = 97/267 (36%), Gaps = 20/267 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M E ++ +V K+ L + + F+ +G+ + + VG K+ +
Sbjct: 1 MFEFVQNNK--FVIKVILGAIALTFVGFGVGSY-TTAVDEPYLAKVGNVKIHKQDLDRAL 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ G ++ + +L+NL+ L GL ++ IA
Sbjct: 58 E----------GQPADAAT------RQAVLENLIRQQLLLADAHAAGLTVSDAQLRKAIA 101
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P ++ FS + + LA + + + + + + +G ++D
Sbjct: 102 SIPALQ-ENGAFSAERYKQFLAGRYQSSVAFEELVKRDILLQGQLTSLLGSQIVPRTVVD 160
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ E+R V +VL A A L +++ +R PE ++ Y++
Sbjct: 161 RMAGVLGESREVRALVLKPEAFAAEVKTDAAALKAFYDASLKRFRTPEAVKLDYVVLSQD 220
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSP 267
+++ E+++ Y ++K + S
Sbjct: 221 ALAAAQAVTDQEVESYYNEHKADFGSE 247
>gi|296273463|ref|YP_003656094.1| hypothetical protein Arnit_1933 [Arcobacter nitrofigilis DSM 7299]
gi|296097637|gb|ADG93587.1| conserved hypothetical protein [Arcobacter nitrofigilis DSM 7299]
Length = 488
Score = 115 bits (287), Expect = 2e-23, Method: Composition-based stats.
Identities = 80/511 (15%), Positives = 169/511 (33%), Gaps = 36/511 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD--ALFSVSGSSTVVSVGRQKVPFSSFIN 58
ML +++ + V I + + + F+ G + S S +V VG +K+ +
Sbjct: 1 MLTWMQRHKKWLV--ITIWISVIAFVGAGFVGWGSYQYGSSSGSVAVVGDRKISVEEYQR 58
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ SQ G N E A+ +GL L ++ + + +D+GL + E
Sbjct: 59 EYSSLYRQYSQVYGNKFNQEMAKRIGLPDAALSLVIQKNLILSYADDLGLLVTDKDIAKE 118
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ + P F KD KF +++V L++ G Y K L R ++ + +
Sbjct: 119 LVQMPSF-IKDGKFDKELYVKVLSQNGTTPVVYE----KSLKRDLLLQKVESLLNFTPQA 173
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
+ D + D ++ L +++ K Y + + +
Sbjct: 174 NEVHNLAKLLFSQDDVSIKLLDPKSIKVDVTDEKLKEYWSTNKIKYLSTDSYDL----EI 229
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
K I S +EL+ Y K K Y + + + + + KK
Sbjct: 230 SKLPVKIITPSENELKEHYAKFKTDYKKEDGKLKTFDEAKDDMIKVISLKESKKDALRKY 289
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
L ++G++ D + + ++ +P + + +K G G+ I V
Sbjct: 290 LTLKKGEAKFDKT-ETIYEDKLPFSAENINEIKTSKLGVVLKPFEDKDGFTIVKVLKKND 348
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+S++ K + + SEK+K ++ + +
Sbjct: 349 PKPLSYELSKDMVKADYIDIQRSEKMKAL------------------VANELKNFTGEDL 390
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
F + K + + +G + ++ S A +
Sbjct: 391 GFVSRKSIDKIKGLTANEAYSFLSKLFIAKEKEGQIDI---NGKVIVYKVNSSKLADNIT 447
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
EE + V ++ E +++ N L +
Sbjct: 448 KEE-ESSVNDILSKLERTELMNNLINNLKSK 477
>gi|313676103|ref|YP_004054099.1| ppic-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
DSM 4126]
gi|312942801|gb|ADR21991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
DSM 4126]
Length = 703
Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats.
Identities = 68/619 (10%), Positives = 182/619 (29%), Gaps = 50/619 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIW---GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
+R + V + + + FL+ G L S+ V + + + +
Sbjct: 4 FNTLRVKMGS-VLIALIGLSILAFLLTDLLGPDSMLLGGGRSNDVGEIAGKTINLPEYQR 62
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
++ G + + S + ++ D L+ + +++GLE + +
Sbjct: 63 KVEEFRNNFRAGNGRAPSDQEMNS--IRQQAWDFLIIEKAFQEQYDELGLEVTNEELVDM 120
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ + F++ + V M +
Sbjct: 121 VQGDNISPIVKRNFTNP------------------------ETGEFNKEQVVNMIRNIAQ 156
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
++ + + + R + +T+ + + +
Sbjct: 157 APAEQQAQWYSFESSLVPARARAKYDELLGGSTYITKAEAERAYKKETENAEVEYLYVPF 216
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF------PNQKEADEAFQSLKK 292
+ + ++ EL++ Y ++K++Y + RT+ + + E + LK
Sbjct: 217 YSVVDSLVTPTDSELKSYYNEHKDQYKTDASRTISYISIELLPSGEDSTMMREEIEELKT 276
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+ + + SD S + + S ++ K+GD YV+
Sbjct: 277 EFQKVDDDSAFARLNSDRSNSYRTYPIAQLPKILASNTNIIKEGDVLGPFIDEGAYVLYK 336
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
S I S + I + +A + +++ + + + G E+++
Sbjct: 337 ASKIFEDTVSSVKASHILIEAEDDSDEADAQARKEAREVLQKAQSGQDFAELAKDFSDGP 396
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
D + V Y +++ E
Sbjct: 397 SATRGGDL--------GWFREGQMVDEFNEAVFAKSGTGVINEVIKTQYGYHIIKVTEEK 448
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
A+ ++ + D+ T T + + KA+ L +K F + S+ ++
Sbjct: 449 TAKTYEIATIHRDIIP---TETTRDRLYRKAD-LFAASNKNYAEFTAAAEENNYSVRSSG 504
Query: 533 QINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+++ G + + F+ E E +VV +T+ + +
Sbjct: 505 KMSPNQRSIGTLGSAREIVRWAFTDASEGKVSDVFETNTHFVVAVLTSETEKGTSDFKEV 564
Query: 591 ISYLTQMMNKDLLDSVIAY 609
+ +++ + + +I
Sbjct: 565 KALVSRAVKEKQKGEIIKE 583
Score = 96.9 bits (238), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/344 (14%), Positives = 108/344 (31%), Gaps = 16/344 (4%)
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAK 334
+KEA E Q + G+ F +LA++ S LG F + + D +++F+ +
Sbjct: 367 QARKEAREVLQKAQSGQDFAELAKDFSDGPSATRGGDLGWFREGQMVD-EFNEAVFAKSG 425
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
G VI +GY I V+ K + T + +DI + + +
Sbjct: 426 TGVINEVIKTQYGYHIIKVTEEKTAKTYEIATIHRDIIPTETTRDRLYRKADLF------ 479
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
S + + V +GK + + + R D K
Sbjct: 480 ---AASNKNYAEFTAAAEENNYSVRSSGKMSPNQRSIGTLGSAREIVRWAFTDASEGKVS 536
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
V + ++ + +EV V + K + E + K + L ++
Sbjct: 537 DVFETNTHFVVAVLTSETEKGTSDFKEVKALVSRAVKEKQKGEIIKEKLSGLSGTLNEMA 596
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
G + I+ N I +F + N +V
Sbjct: 597 S---AYGADANVYTSNDVNISSNSLPNVGQAPKVIGTIFGMELNTQSQPLEANNGIVIVK 653
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + + + L Q + ++ ++ + ++ + +
Sbjct: 654 VLNRTPAPEIADYTSYKDQLAQNRSNNVSFAIKSAIEEKAEIVD 697
>gi|317051803|ref|YP_004112919.1| hypothetical protein Selin_1633 [Desulfurispirillum indicum S5]
gi|316946887|gb|ADU66363.1| hypothetical protein Selin_1633 [Desulfurispirillum indicum S5]
Length = 480
Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 65/461 (14%), Positives = 149/461 (32%), Gaps = 22/461 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
M+ R + KI L + F+ +WG+ G V+ V ++ +
Sbjct: 1 MIHKFRNV--SAPVKILLWFVIATFVGSIFVVWGIQSGDQRSRG--YVIKVNDIEIGPNE 56
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
F ++ Q IS G ++E + + + ++DNL+S A L Q + L +
Sbjct: 57 FNRTYNQVHQNISALFGNQGDAE--INRQIREIVIDNLISKALLLQEAQRRNLRVSDQEL 114
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
+ IA F ++ FS ++ + L ++ + + + L + V +R +
Sbjct: 115 FNSIAAIEAFQ-EEGVFSRTLYRNVLEANKLSPAIFEEMQKESLLVEKIQNQIVAEVRIT 173
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
L + ++ + DYI+L + + VL + E Y P+ +ISY
Sbjct: 174 EDDLQEEFQWQQGRVAFDYIILFPELFADSVETNEQVLRAYHETNAKQYETPKSIQISYA 233
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
++ + + E+ + + T E++ S+ +
Sbjct: 234 FVPYDPQDSSTQETASEVLQSLREAVVQQQKDFATTAEEMEVEFVTSYIFDQNSIPEDLL 293
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+ + + + D ++ + K+ D P++ +++
Sbjct: 294 RETRLIREAFLMPQGRYTNVIRGQ-------DKLYLVKKEQDIPPMVVPYEEIQDQVLAD 346
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ K + R + E + E + + L
Sbjct: 347 YIQHQSYVIAMEKAES---FRGMELFAIAAEVNAQPESTDLISYMDTNGGPGFNEDVMYL 403
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
+ G+ E+ IP+ Q+ + + +
Sbjct: 404 AFLTEVGQTAGPAEIINIPFFLQVTEKETPDMELFESLRPL 444
Score = 37.9 bits (85), Expect = 5.7, Method: Composition-based stats.
Identities = 25/242 (10%), Positives = 69/242 (28%), Gaps = 6/242 (2%)
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL-VDFAGKDVKGKEVAA 432
+ + Y+ + E L ++ E ++E ++ + + + +
Sbjct: 121 IEAFQEEGVFSRTLYRNVLEANKLSPAIFEEMQKESLLVEKIQNQIVAEVRITEDDLQEE 180
Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV-LTDVKKDWK 491
+++ + + P +V + + K ++ V D +
Sbjct: 181 FQWQQGRVAFDYIILFPELFADSVETNEQVLRAYHETNAKQYETPKSIQISYAFVPYDPQ 240
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD-GIS 550
T E S L ++ K+F + + +T+ ++ I
Sbjct: 241 DSSTQETASEVLQSLREAVVQQQKDFATTAEEMEVEFVTSYIFDQNSIPEDLLRETRLIR 300
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
+ F P Y+V K + V ++ + + S + +
Sbjct: 301 EAFLMPQGRYTNVIRGQDKLYLVKKEQDI-PPMVVPYEEIQDQVLADYIQH--QSYVIAM 357
Query: 611 KS 612
+
Sbjct: 358 EK 359
>gi|119356179|ref|YP_910823.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
phaeobacteroides DSM 266]
gi|119353528|gb|ABL64399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
phaeobacteroides DSM 266]
Length = 700
Score = 114 bits (284), Expect = 4e-23, Method: Composition-based stats.
Identities = 64/676 (9%), Positives = 173/676 (25%), Gaps = 93/676 (13%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ-KIGFVVNSERARSVGLD 86
WG++ + FS V + + + + + + G + G + +
Sbjct: 30 WGMNFSGFSGKKRDIAGKVNGKDISAAQYEEVYNEISGNFRRTNPGAEITP--VTELEFR 87
Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR-------SPLFHGKDNKFSHDVFVS 139
++ + +V L++ G+ V + F
Sbjct: 88 QQAWNIVVDQTLLEEQFAKFGITVQDQEVVESLDSPEPPMIIRQNFSDSTGSIDRKKLDV 147
Query: 140 RLA--REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ + + L ++ +R + LD R F S ++ +
Sbjct: 148 ARRDPKNKDLWLQLEKMVQRELKVNKLIRALQPMVRVTGRELDDIVRRNFGRFSASFVPV 207
Query: 198 NNRHVPAIAD--PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+ +++ ++K+ + + Y+ F + K EL++
Sbjct: 208 PLSFAGTDTSFPVKEDEIQKYYNEHKELLKQLPSRSADYVFFPLTPSSKDSSSVRSELES 267
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
+ + + + + + + +G
Sbjct: 268 LRSEFSAAVNDTDYVK---VQSDRPNGVNVLYNRANFSLPAGSIVFSPANLKAGAIVGPV 324
Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
+ + + + + ++ V ++ + F+ ++ + +
Sbjct: 325 ADRGEYRLLKIKEVRTAQPIARASHILLRFNPGNKEEVEKVRERMVMIFKNLQAGVPFET 384
Query: 376 RITKASEKVKEDYKRLEEFLALGTSM-----------------DEISRREKIVSIDLPLV 418
K SE + + SM + + + I +
Sbjct: 385 LAGKYSEDPGSAVQGGDLGWFTRESMLPEFSAAVFSGTPGAVVKPVQTKFGLHIIKVTGF 444
Query: 419 DFAGKDVKGKEVAAIPYKE--------QLLFRVFGKDDPLSKD----------------- 453
D P E + F++ KD L K
Sbjct: 445 DQTAVIASEIVRTIRPSTETVDSARRLAMAFQMQAKDKGLEKSASTEKLVVGKTGDFGKH 504
Query: 454 ------------------------HTVALPDGSYMWVQIKESIPARDRK-LEEVLTDVKK 488
V + + +++ R+ ++ +
Sbjct: 505 TLIADIGFSDKITAFAFNGKEGALSDVIETEKGFYVMKLTGVNDTGYRRLDADLKKRITA 564
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL-GASLLTTNQINRMDNENKFFGYD 547
+ +K + K L L + G I G ++T + I +D +G+D
Sbjct: 565 ELVRLKKEPVLEKK---LSLNAKQSGATLDKIAAAYPGTVVVTADDIRWVDGFIPGYGFD 621
Query: 548 -GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY----LTQMMNKDL 602
+ + S E P++ Y + ++ + ++ + + + Q L
Sbjct: 622 QPLVEAMSAMTEGKLSGPVKTNDGYAIVLLSKKNMPAERDVEAAKTAFTPKIIQDKLNRL 681
Query: 603 LDSVIAYLKSQYSVTV 618
A +K +
Sbjct: 682 FTEYFATIKKNAVIED 697
>gi|313203966|ref|YP_004042623.1| ppic-type peptidyL-prolyl cis-trans isomerase [Paludibacter
propionicigenes WB4]
gi|312443282|gb|ADQ79638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paludibacter
propionicigenes WB4]
Length = 704
Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats.
Identities = 78/709 (11%), Positives = 194/709 (27%), Gaps = 102/709 (14%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L+ IR S+ + + + + F++ + + F V V + + +
Sbjct: 4 LDRIR--SKGVLLVAVVGLALLAFIVGDFLKEGSTFFNKSKEIVGKVAGDDINIKEYTAA 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE- 118
+Q + + G +E + + + + ++++S L+ + +GL +
Sbjct: 62 IEQMTEVYKIETGRAELNEEM-TTQIRQSVWESMMSEKILNAEAKKLGLAVSADELSDRL 120
Query: 119 --------IARSPLFHGKDNKFSH----------------DVFVSRLAREGINEKEYIDH 154
I + F G++ +FS + ++A+ +
Sbjct: 121 IGNNIHPLIMQRRTFAGENGQFSRPALVQFLSSLEQAPANEEMKQQIAQAKNYWNFWEKT 180
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVL 213
+ + + + ++L + + V Y+V A S++ +
Sbjct: 181 VKNSILQEKYNALISKSVCANSLDAKMSFEDKKTSVDVAYVVQPYFAVPDADIKVSSSEI 240
Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
+ K K+ + + + V K + E +A +K + ++ +
Sbjct: 241 KDLYNKKKEQF----KQDANCSFSYVAFDIKPLPEDYKEGEAWMKKLEGEFKTTADVAAL 296
Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAE-------------EQGKSLSDISLGSFSKEYI 320
+ + A +++ + G +
Sbjct: 297 VNSNSDVMYDGRNYSERTVPALLKDFAFGSATGAVYGPSFVNDTYTMARVMQGGIMQSDS 356
Query: 321 PD--VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS---------FTVSFQEVKK 369
+ + + + G+ +A + + + +
Sbjct: 357 VKLRHIFLLAKDATKADSLVSAIKGGADFGALAKKYSAVKQTAANGGEIGWMQEATQGPE 416
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+K+ + + R+ K+ ++ +V + K
Sbjct: 417 KEITSQAFSKSKNDIFTIKDEQGVQIFQVMDKTPARRKVKLAILERKIVPSSKSYSKIYN 476
Query: 430 VAAIPYKEQLLFRVFGKDDPLS-----------------------------------KDH 454
A + K
Sbjct: 477 DAKQFAVDLSADNFDKKAKEKGYIVRPAAEVLRSTEKIADINQSRQIIRWVFNSSKNDVS 536
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
V ++ E R LE+V +K + K AE + L E SK G
Sbjct: 537 DVFDCGTKFVVAMTTELNKKGYRSLEKVSDQLKAEIIKDKKAESM---IKNLSAELSKTG 593
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENK--FFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
+ + L S+ T +N + F I +V + V PI+
Sbjct: 594 -SLEGLASLLKDSVKTAPAVNFASYQLGTAGFEPAVIGKVTKTALGKVST-PIKGNAGVY 651
Query: 573 VFKVTNSKVGPVQEKDKFIS-YLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
V + +N +V P + L ++ L ++ +K + +T +
Sbjct: 652 VVRTSNKQVNPQAFNAQLEKMQLNARLSYSLSYTLFQDMKEKADITDNR 700
>gi|91204986|ref|YP_537341.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii
RML369-C]
gi|91068530|gb|ABE04252.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii
RML369-C]
Length = 519
Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats.
Identities = 76/504 (15%), Positives = 177/504 (35%), Gaps = 5/504 (0%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML IRK + +++ ++ ++ F+ +G+ D L G V + + F+ +
Sbjct: 1 MLNNIRKTADSFIMRVLFAMIVFAFVGFGIKDVLHGRGGGDIVTFSHAKNISQEDFLRAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ IS+++G + E + +D +IL LV LD + + V +
Sbjct: 61 SLEINAISKQVGVSLTEEEIAQLNIDNRILKRLVFENILDYLVSYYDFDISDDTVKNLVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F F +F + +E++Y+ ++ + + G F+ + D
Sbjct: 121 ESPVFKNDQGIFDIKLFKTYFRNSYTDEEKYLVNFKEKALKNIFAGTFLDSFYVPKAMTD 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R V+ + +N ++ P PS+ L +++ K ++ PE + SYI
Sbjct: 181 NIVNYMAEKREVELVQMNLQNKPKDLQIPVPSDQELKDFYQNNKSSFEIPEKRSFSYIKV 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+KKI+++ +EL Y +NKE++ V++ + + +++ K
Sbjct: 241 TTENLQKKIQVTKEELLEFYNENKEEFGEQSFEDVQKQLREQVESQKIDILNMELAKNLE 300
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ I ++S AD I + + S G + +
Sbjct: 301 DDVAAGSSLVEIAEKYELPINNINNISYADLIEDKIIAENADSIFELSEGELSYPIEAED 360
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI--VSIDL 415
S+ V + + A E++ + + M ++++ +
Sbjct: 361 KSYLVLVELKSINPAKIPEFDSIKEQINSTWIKQYLADLNIKIMKDLAKEDNFDTEDKTS 420
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
++ + ++L +F + D + ++
Sbjct: 421 NAKIRNKTYIRSEMENDQMLTPEILLSIFNTQIGANTPVFQVGDDLYFAHIKSTNIDEQV 480
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEV 499
+ + + +E+
Sbjct: 481 AKNIRTNSEKNIVNTIKNSIIDEL 504
Score = 51.0 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/293 (9%), Positives = 77/293 (26%), Gaps = 2/293 (0%)
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
F +L + + ++ K + +K A
Sbjct: 108 FDISDDTVKNLVKESPVFKNDQGIFDIKLFKTYFRNSYTDEEKYLVNFKEKALKNIFAGT 167
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
+ K D + +++ + K + +P+ + +
Sbjct: 168 FLDSFYVPKAMTDNIVNYMAEKREVELVQMNLQNKPKDLQIPVPSDQELKDFYQNNKSSF 227
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
+ + K + + + + + ++ E+V +++ ++ K
Sbjct: 228 EIPEKRSFSYIKVTTENLQKKIQVTKEELLEFYNENKEEFGEQSFEDVQKQLREQVESQK 287
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
A L + G + +I + + N I+ D + +F
Sbjct: 288 IDILNMELAKNL-EDDVAAGSSLVEIAEKYELPINNINNISYADLIEDKIIAENADSIFE 346
Query: 555 GPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ SY V+ ++ + + E D + K L +
Sbjct: 347 LSEGELSYPIEAEDKSYLVLVELKSINPAKIPEFDSIKEQINSTWIKQYLADL 399
>gi|260061697|ref|YP_003194777.1| peptidylprolyl cis-trans isomerase [Robiginitalea biformata
HTCC2501]
gi|88785829|gb|EAR16998.1| peptidylprolyl cis-trans isomerase [Robiginitalea biformata
HTCC2501]
Length = 706
Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats.
Identities = 77/627 (12%), Positives = 174/627 (27%), Gaps = 58/627 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINS 59
LE IRK + V + + + F++ + S S V V + + F
Sbjct: 4 LENIRKRTT--VLILIIGMALFAFVVSDVLTRGGFGSDKIGSAVGEVNGEPISIDDFRAR 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ G + A S + I D V A L Q E +G++ ++ I
Sbjct: 62 MEAAEGSFGPQ---------ATSTQIVNSIWDQTVRTAILGQEFEKLGIDIQQDQIMDLI 112
Query: 120 ARSPL------FHGKDNKFSHDVFVSRLA-------REGINEKEYIDHYTKMLSRTDVVG 166
+P F + F D F + + ++ + D +
Sbjct: 113 RNNPNFTQNPQFQDANGNFDEDAFRNFITELRVNQPQQYQMWLQTEDALIQAAKEQTYFD 172
Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYR 225
+ G+ + + R + + Y+ + + S + + ++ ++
Sbjct: 173 LIRAGVGATLKEGELDYRLANDKVDIRYVRVPYTSIPDSTISVSKEEIAAYIKENPSEFK 232
Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
+ + Y+ F+ + L+A L + D
Sbjct: 233 QEAARDLRYVYFEEKASAADETAIEESLRAL------------------LEDEEEYREDL 274
Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
+ G SD + + + + G+
Sbjct: 275 DSTVVNPGFLNTDDMLAFLDRNSDTKYDTIYRAKSELPTQWADTLMALETGETFGPYRDG 334
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
+ ++ + + K + I + + + A +
Sbjct: 335 NAFKVSRMMDRKENG----SVKASHILISYAGAERANPSVTRTQEEARERAEELLAEARR 390
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + D G F F + + V G Y
Sbjct: 391 SGAQFAQLARDNSDGPSAPNGGDLGYFQEGVMTDAFNDFAFGNAVGTVGLVETEFG-YHV 449
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++ + + + +T + ++A L + S + FR I + G
Sbjct: 450 VKVDDKRDVVRLATLTRAIE-----PSEETINSLFTEATSLEMAVSDSPETFRSIAEEKG 504
Query: 526 ASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNS-KVG 582
+ N++ MD G + F+ E+ + Y + ++T + K G
Sbjct: 505 YQVRPVNKVRTMDENLPGLGAQRRIVQWAFNSDTEIGDIRRFDVAGGYAIVQLTGTYKEG 564
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ +D + L ++ K ++A
Sbjct: 565 TMSVEDASVQVLPKLRKKAKAQQILAA 591
Score = 96.5 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/521 (8%), Positives = 139/521 (26%), Gaps = 35/521 (6%)
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ + I +P ++ +E + +L +
Sbjct: 213 ISVSKEEIAAYIKENPSEFKQEAARDLRYVYFEEKASAADETAIEESLRALLEDEEEYRE 272
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+ + F + + ++ N+ + + L +
Sbjct: 273 DLDSTVVNP-------GFLNTDDMLAFLDRNSDTKYDTIYRAKSELPTQWADTLMALETG 325
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT-VEQLVFPNQKEADEA 286
E N ++A + + ++ +
Sbjct: 326 ETFGPYRDGNAFKVSRMMDRKENGSVKASHILISYAGAERANPSVTRTQEEARERAEELL 385
Query: 287 FQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
++ + G +F QLA + + + LG F + + D + + ++
Sbjct: 386 AEARRSGAQFAQLARDNSDGPSAPNGGDLGYFQEGVMTDAFNDFAFGNAV---GTVGLVE 442
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
FGY + V + + ++ + + + + E +
Sbjct: 443 TEFGYHVVKVDDKRDVVRLATLTRAIEPSEETINS----LFTEATSLEMAVSDSPETFRS 498
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
I+ + + V + + + + +++ F D + + G Y
Sbjct: 499 IAEEKGYQVRPVNKV-----RTMDENLPGLGAQRRIVQWAFNSDTEIGDIRRFDVA-GGY 552
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
VQ+ + +E+ V + +KA Q++ +GK+ +I +
Sbjct: 553 AIVQLTGTYKEGTMSVEDASVQVLPKLRK-------KAKAQQILAA--NQGKSIEEIASS 603
Query: 524 LGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
++ T +N G + + + + ++
Sbjct: 604 NAVAISTATALNVKSPTIPGAGREPLVVGIATVMDQGATSDLIEGETGVFKLEVTGKTEA 663
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+ + + L + + V L+ + + + ++
Sbjct: 664 PELDNYAPYANTLRSSLGPRVAAEVYQALRDKAEIEDNRSI 704
>gi|157827683|ref|YP_001496747.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii OSU
85-389]
gi|157802987|gb|ABV79710.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia bellii OSU
85-389]
Length = 519
Score = 113 bits (282), Expect = 8e-23, Method: Composition-based stats.
Identities = 74/504 (14%), Positives = 168/504 (33%), Gaps = 5/504 (0%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML IRK + +++ ++ ++ F+ +G+ D L G V + + F+ +
Sbjct: 1 MLNNIRKTADSFIMRVLFAMIVFAFVGFGIKDVLHGRGGGDIVTFSHAKNISQEDFLRAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ IS+++G + E + +D +IL LV LD + + V +
Sbjct: 61 SLEINAISKQVGVSLTEEEIAQLNIDNRILKRLVFENILDYLVSYYDFDISDDTVKNLVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F F +F + +E++Y+ ++ + + G F+ + D
Sbjct: 121 ESPVFKNDQGIFDIKLFKTYFRNSYTDEEKYLVNFKEKALKNIFAGTFLDSFYVPKAMTD 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R V+ + +N ++ P PS+ L +++ K ++ PE + SYI
Sbjct: 181 NIVNYMAEKREVELVQMNLQNKPKDLQIPVPSDQELKDFYQNNKSSFEIPEKRSFSYIKV 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+KKI+++ +EL Y +NKE++ V++ + + +++ K
Sbjct: 241 TTENLQKKIQVTKEELLEFYNENKEEFGEQSFEDVQKQLREQVESQKIDILNMELAKNLE 300
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+ I ++S AD +A+ D + +
Sbjct: 301 DDVAAGSSLVEIAEKYELPINNINNISYADLIEDKIIAENADSIFELSEGELSYPIEAED 360
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
V + + + I K + L +
Sbjct: 361 KSYLVLVELKSINPAKIPEFDIIKEQINSTWIKQYLADLNIKIMKDLAKEDNFDTEDKTS 420
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
++ + ++L +F + D + ++
Sbjct: 421 NAKIRNKTYIRSEMENDQMLTPEILLSIFNTQIGANTPVFQVGDDLYFAHIKSTNIDEQV 480
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEV 499
+ + + +E+
Sbjct: 481 AKNIRTNSEKNIVNTIKNSIIDEL 504
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 28/293 (9%), Positives = 77/293 (26%), Gaps = 2/293 (0%)
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
F +L + + ++ K + +K A
Sbjct: 108 FDISDDTVKNLVKESPVFKNDQGIFDIKLFKTYFRNSYTDEEKYLVNFKEKALKNIFAGT 167
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
+ K D + +++ + K + +P+ + +
Sbjct: 168 FLDSFYVPKAMTDNIVNYMAEKREVELVQMNLQNKPKDLQIPVPSDQELKDFYQNNKSSF 227
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
+ + K + + + + + ++ E+V +++ ++ K
Sbjct: 228 EIPEKRSFSYIKVTTENLQKKIQVTKEELLEFYNENKEEFGEQSFEDVQKQLREQVESQK 287
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
A L + G + +I + + N I+ D + +F
Sbjct: 288 IDILNMELAKNL-EDDVAAGSSLVEIAEKYELPINNINNISYADLIEDKIIAENADSIFE 346
Query: 555 GPVEMVKCFPIENGLSY-VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ SY V+ ++ + + E D + K L +
Sbjct: 347 LSEGELSYPIEAEDKSYLVLVELKSINPAKIPEFDIIKEQINSTWIKQYLADL 399
>gi|118475291|ref|YP_891759.1| putative peptidyl-prolyl cis-trans isomerase D,-like protein
[Campylobacter fetus subsp. fetus 82-40]
gi|118414517|gb|ABK82937.1| putative peptidyl-prolyl cis-trans isomerase D, homolog
[Campylobacter fetus subsp. fetus 82-40]
Length = 485
Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 64/402 (15%), Positives = 131/402 (32%), Gaps = 18/402 (4%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++K + V I++ + F+ WG D + + +++V VG + + F
Sbjct: 1 MLTWMQKHKKYLVVTIWISTIAFVGAGFVGWGAYD--LNSNRATSVAKVGNRNITIQEFQ 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++ S E+A +GLD+ L L+ +++DIGL +
Sbjct: 59 KTYSNLYNYYSSLSEGKFTQEQADEMGLDRIALQRLIQENLFLNYVDDIGLMVSKEELIA 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ F D KF + L R I K++ L+ ++ F +
Sbjct: 119 ALTSDEGFQV-DGKFDKSRYEDTLKRARITPKDFE----NELTNKLLLNKFFDAINLKTN 173
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D + + L +EK K+ Y +
Sbjct: 174 QTDLDILASSYFMEDKVSINIIKADKNSISVDENELKDLWEKSKNRYLTKSKFELQTKFI 233
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + L+ +E+N+ Y + + + + D + +K
Sbjct: 234 PQTNIDVNDTV----LEEFFEENRGNYRDGFDKLLTFDKAKDDVKYDYELKQARKTALEE 289
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L ++G+S + ++ + AK GD GY+IA +
Sbjct: 290 YLKIKKGESNATTAVTVLEDNE----DFPINELRDAKVGDVLKPFEYKNGYMIAELVGKN 345
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
+S++E K + K + ++E K+ +
Sbjct: 346 MPEVMSYEEAKDALTKVYMDEKGKKLLEEKAKQSLNNFSGKD 387
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 29/297 (9%), Positives = 79/297 (26%), Gaps = 23/297 (7%)
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
+ L D + ++ ++ + F E + + K
Sbjct: 206 ENELKDLWEKSKNRYLTKSKFELQTKFIPQTNIDVNDTVLEEFFE-ENRGNYRDGFDKLL 264
Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
K ++ + KI + ++ ++ +
Sbjct: 265 TFDKAKDDVKYDYELKQARKTALEEYLKIKKGESNATTAVTVLEDNEDFPINELRDAKVG 324
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
V + + YM ++ EE + K + K + +
Sbjct: 325 DVLKPFEYKN----------GYMIAELVGKNMPEVMSYEEAKDALTKVYMDEKGKKLLEE 374
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
KA Q + + ++ + +D ++ I ++F P +
Sbjct: 375 KAKQSLNNF-----------SGKDIGFVSRDTKKSIDGLSETEYLTFIMKLFESPNKNGY 423
Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK-DLLDSVIAYLKSQYSVT 617
+ Y + + + V+E + +S + L ++ L+ +Y +
Sbjct: 424 VMLDTKAVVYSILEQRLLNLDKVKEYNALLSQNASAIKNGQLERDLLDALQKRYKIE 480
>gi|256419787|ref|YP_003120440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga
pinensis DSM 2588]
gi|256034695|gb|ACU58239.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga
pinensis DSM 2588]
Length = 702
Score = 113 bits (281), Expect = 9e-23, Method: Composition-based stats.
Identities = 78/711 (10%), Positives = 172/711 (24%), Gaps = 106/711 (14%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPF----LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
++ IR V + + + V F +G + + S+TV V ++ F+ +
Sbjct: 4 IQKIRDKY-AVVIVVVICLAIVSFLLQDAFFGKNSLIRR---STTVGKVNGTELEFTEYQ 59
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
K + G V + + +S L E +GL +
Sbjct: 60 QMIKNAEDRMRMSNGAV---NEQITQQARESAWTKFLSDNILSAQYEKLGLAVTEEEIKD 116
Query: 118 E--------IARSPLFHGKDNKFSH----------------------------------- 134
+ I K KF
Sbjct: 117 QFTGKNPSPIITQQFTDEKTGKFDRARMQQVLASISQDKTGQMRAGLLQLEEYIAQSRVS 176
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ ++S + + K + + ++T + + + +
Sbjct: 177 EKYLSLIKQAVYYPKWLAEKQIQDNAQTASISYVSVPYASIADSTVKVSDSELNSFINSH 236
Query: 195 IVLNNRHVPAIADP-----------SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
L D + A L + ++ ++I +
Sbjct: 237 KELFKVEESRKVDYLAFNVIPSAADTAATLKVLMDAKQELDTISNNDIAAFINRNSDLPY 296
Query: 244 KKIEISNDELQAEYEK----------NKEKYFSPEIRTVEQLVFPNQKEADEAF------ 287
IS L + Y + I + + ++ +
Sbjct: 297 YDSYISKSALMVPQKDTLVTLPVGAVFGPYYDNNLIVYAKMIDRKTLPDSVKVRHILVAT 356
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
Q+ + G LA+ + S+ G + + + D
Sbjct: 357 QNQQGGGLPDSLAKARIDSIERAVKGGADFKALVEQYTDDVRSKPTGGEYDVTPSTDFLK 416
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK-------------VKEDYKRLEEF 394
+ ++ K +E +
Sbjct: 417 EFKDFALEKGKGAIGVVKTAAGYHLIEVLEQKNIGSAVKLAYLAKPVSPSRETDSKAYAE 476
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
S + ++ + + L +++ + + + D
Sbjct: 477 ANEFASKNRDAKTFEKTIQEKGLNKRIADNLRPMDFVIPGIGQARELVRWAYDSDKGAVS 536
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
V D +Y+ + LE+V V+ + + K A ++ K K
Sbjct: 537 NVFTFDNTYVVAVLTTVRAEGTAPLEDVRPSVEAEVRKQKKAAQIIEKI--------KSP 588
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVK-CFPIENGLSY 571
+ D+ K + I G++ + F+ K PIE
Sbjct: 589 ASLADVSKATNQPEQKADGIGFGTPFVASMGFEPRVVGAAFNKAWGTAKVSAPIEGNAGV 648
Query: 572 VVFKVTNSKVGPV-QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
V KV + + G Q+ Q M L + LK + + +
Sbjct: 649 YVLKVDSYQPGQGGQDPASVSRAYEQSMLSALDGQLFTVLKKLSKIEDNRS 699
>gi|157737622|ref|YP_001490305.1| hypothetical protein Abu_1381 [Arcobacter butzleri RM4018]
gi|157699476|gb|ABV67636.1| conserved hypothetical membrane protein [Arcobacter butzleri
RM4018]
Length = 485
Score = 113 bits (280), Expect = 1e-22, Method: Composition-based stats.
Identities = 70/505 (13%), Positives = 154/505 (30%), Gaps = 37/505 (7%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ +++ + V I++ + F+ WG D V +G ++V +
Sbjct: 1 MITWMQRHKKWLVITIWISTIAFVGAGFVGWGSYDYGKQGG---VVAKIGDREVTVEEYQ 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ S+ G + N++ A +GL + ++ + + +GL+ +
Sbjct: 58 QEYSNLYSQYSRMFGDMFNNQIAEQLGLKDIAYNQVLQKNLFMAYGDSLGLDVTDEEIAR 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
E+ + F KD KF D ++ L + + K + + L RT ++ +
Sbjct: 118 ELLKYEAFF-KDGKFDKDTYLKVLNQNRLTPKHFEE----SLKRTLLLQKVQSLFEVNPT 172
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ D + L +++E K++Y + +
Sbjct: 173 SWEVENISKLLFLEDDITIKILSSNDVKVTVDEEGLKKYWEDNKNSYMSEVTYDLEIKEI 232
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ E++ +YEK K Y + + Q + D + K I
Sbjct: 233 PFINSN----STEAEIKEQYEKFKIDYKHEDGKIKSLEEATPQIKTDLDDKFTKTEALKI 288
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L ++ + D +L + +P + K G+ + Y+I V +
Sbjct: 289 YLKLKKDEEKFDKTLN-ILESKLPYSQENIAKIKEVKNGEVVKPFMENGKYIIVKVVKLN 347
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
PS + F++ K + A + + D+
Sbjct: 348 PSKVLDFEQAKAKATQDY---------------EKVLRAQKLQEQAKAELKDFKGTDIAG 392
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
V K + + + QL F + D V + +
Sbjct: 393 VTRTSKIAGLSQEESTNFLNQLFFATTKEGVIGIGDKIV------LYRINSSKIKDYDKT 446
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSK 502
K + V + + +T +
Sbjct: 447 KDQAVKNAIMQLQETELMTNLLQKL 471
>gi|332882479|ref|ZP_08450097.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332679539|gb|EGJ52518.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 705
Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 82/630 (13%), Positives = 199/630 (31%), Gaps = 57/630 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
LE IR S+T + + F+I + FS + + +V + VP +F
Sbjct: 4 LEKIR--SKTVFLIAIIGLALFAFIISDFIGKGRFSNHQPTEIGTVNGEDVPIDAFRLQV 61
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-- 118
+ + + + A S+ K + + V L+Q IE +GL + ++
Sbjct: 62 ENAVHQANGQ---------ASSIEAAKYVWEQNVQQILLNQQIEKLGLSVEKDQIISILA 112
Query: 119 ---IARSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYIDHYTKMLSRTDVVGMF 168
+A++P F + F F + L + K D + + +
Sbjct: 113 KTPLAQNPQFVNEYGVFDPSKFTAYLNTLKSNNPQAYAQWKMQEDAIIEGAKQQMYFSLI 172
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP 227
G+ +N + A + + Y+ L + + S++ + + +K++ ++
Sbjct: 173 RAGLGVTNAEAEIAYHQEKDMADISYVALQYSSIDDKNINVSDSEIKDYIKKHEKQFKQE 232
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
Y+ I YI+ + + + + L
Sbjct: 233 AYRNIQYIVVNEKPSAADTQAEKEAINKL------------------LQPEIVFNNQTHA 274
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G + +E SD + S G
Sbjct: 275 NDTIAGFAQTKNVKEFVDRHSDTPYDTLFVSKEDLRSAYADTLFALPVGKVFGPYEEDGN 334
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
++ + P+ V I + ++A+ K + A + +
Sbjct: 335 LKLSRMIAKDPNGAVK----ASHILIAYKGSQAATPNTTRTKEEAKAKAESLLAEAKAAG 390
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
++ D G + +G ++ + + D Y V+
Sbjct: 391 ADFAALASENSDEPGANYRGGDLGFFKRGAMVKPFEQFVFANPVGTIGIVETDFGYHVVK 450
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + P + + T E+ SK + ++ S+ K+F +I K+ +
Sbjct: 451 VTDKAPTVQLATITRKVE-----PSEATLNELFSKVSNFEMKASQNPKDFSNIAKSSDLT 505
Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+L + +++ D++ G + +F+ ++ NG +Y+V ++ +
Sbjct: 506 VLRADNLHKNDDQIIGLGANRQIVQWLFNKETKVGDLKKFTNGGNYIVAQLVKQGEEGLS 565
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ ++ ++ ++ ++ LK +
Sbjct: 566 DVQDVAPFVKPILIREKKAAI---LKEKAK 592
Score = 101 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 57/535 (10%), Positives = 151/535 (28%), Gaps = 38/535 (7%)
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
A I+D + + I + + +F + + + + +NEK
Sbjct: 200 ALQYSSIDDKNINVSDSEIKDYIKKH------EKQFKQEAYRN-IQYIVVNEKPSAADTQ 252
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
+ + D F +++ ++ S L
Sbjct: 253 AEKEAINKLLQPEIVFNNQTHANDTIAGFAQTKNVKEFVDRHSDTPYDTLFVSKEDLRSA 312
Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
+ + ++ + N ++A + K +
Sbjct: 313 YADTLFALPVGKVFGPYEEDGNLKLSRMIAKDPNGAVKASHILIAYKGSQAATPNTTRTK 372
Query: 277 FPNQKEADEAFQSLKKGKKF-----IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
+ +A+ K + ++E G + LG F + + F
Sbjct: 373 EEAKAKAESLLAEAKAAGADFAALASENSDEPGANYRGGDLGFFKRGAMVKPF---EQFV 429
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
A ++ FGY + V++ P+ ++ K + + +
Sbjct: 430 FANPVGTIGIVETDFGYHVVKVTDKAPTVQLATITRKVEPSEATLNE----LFSKVSNFE 485
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
+ I++ + + + ++ + Q++ +F K+ +
Sbjct: 486 MKASQNPKDFSNIAKSSDLTVLRADNL-----HKNDDQIIGLGANRQIVQWLFNKETKVG 540
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
G+Y+ Q+ + +++V VK K A + KA
Sbjct: 541 DLKKF-TNGGNYIVAQLVKQGEEGLSDVQDVAPFVKPILIREKKAAILKEKAK------- 592
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGL 569
G + I + T + + G + I F + PI+
Sbjct: 593 --GNSLAAIASANKTEVKTATGLTMNNPILIGEGREPKVIGAAFGLKQGAI-SKPIDGEN 649
Query: 570 SYVVFKVTNSKVGPV-QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ V +V++ V P + + + ++ + ++ L++ ++ + +
Sbjct: 650 AVYVIQVSSVSVAPATNDYKTYAETIEKLRTERAGQGILKSLENSATIKENISAF 704
>gi|315637398|ref|ZP_07892611.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
gi|315478290|gb|EFU69010.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
Length = 485
Score = 112 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 70/505 (13%), Positives = 154/505 (30%), Gaps = 37/505 (7%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ +++ + V I++ + F+ WG D V +G ++V +
Sbjct: 1 MITWMQRHKKWLVITIWISTIAFVGAGFVGWGSYDYGKQGG---VVAKIGDREVTVEEYQ 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ S+ G + N++ A +GL + ++ + + +GL+ +
Sbjct: 58 QEYSNLYSQYSRMFGDMFNNQIAEQLGLKDIAYNQVLQKNLFMAYGDSLGLDVTDEEIAR 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
E+ + F KD KF D ++ L + + K + + L RT ++ +
Sbjct: 118 ELLKYEAFF-KDGKFDKDTYLKVLNQNRLTPKHFEE----SLKRTLLLQKVQSLFEVNPT 172
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ D + L +++E K++Y + +
Sbjct: 173 SWEVENISKLLFLEDDITIKILSSNDVKVTVDEEGLKKYWEDNKNSYMSEVTYDLEIKEI 232
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ E++ +YEK K Y + + Q + D + K I
Sbjct: 233 PFINSN----STEAEIKEQYEKFKIDYKHEDGKIKSLEEATPQIKTDLDDKFTKTEALKI 288
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
L ++ + D +L + +P + K G+ + Y+I V +
Sbjct: 289 YLKLKKDEEKFDKTLN-ILESKLPYSQENIAKIKEVKNGEVVKPFMENGKYIIVKVVKLN 347
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
PS + F++ K + A + + D+
Sbjct: 348 PSKVLDFEQAKIKATQDY---------------EKVLRAQKLQEQAKAELKDFKGTDIAG 392
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
V K + + + QL F + D V + +
Sbjct: 393 VTRTSKIAGLSQEESTNFLNQLFFATTKEGVIGIGDKIV------LYRINSSKIKDYDKT 446
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSK 502
K + V + + +T +
Sbjct: 447 KDQAVKNAIMQLQETELMTNLLQKL 471
>gi|157804205|ref|YP_001492754.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia canadensis str.
McKiel]
gi|157785468|gb|ABV73969.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia canadensis str.
McKiel]
Length = 524
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 81/510 (15%), Positives = 181/510 (35%), Gaps = 12/510 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ RK + +++ +I ++ F+ +G+ D L G V + + + F+ +
Sbjct: 1 MLDNFRKTADSFIMRILFAMIAFAFIGFGIQDVLNGRRGGDVVTFSHAKNISQADFLRAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ IS++ G + E + +D ++L LV LD + L+ V +
Sbjct: 61 SLEINAISKQTGTNLTDEEIAQLNIDNRVLKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F K F +F + ++E++Y+ ++ + + VG F + D
Sbjct: 121 ESPVFKNKQGVFDIKIFKTYFRNSYMDEEKYLSNFKEKALKNIFVGTFAESFYVPKAMTD 180
Query: 181 QAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R V + N I P++ L +++ K + PE + SYI
Sbjct: 181 NIVDYMAEKREVELVQIDLQNKPQDLQIPTPTDQQLKDFYQDNKTLFEVPEKRSFSYIKA 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ + + ++ DEL Y +NK+++ + TV++ + K +++ KK
Sbjct: 241 NIKDLKV--SVTQDELLEFYNENKDEFGNQSFETVQKQLHDLLKAQKIDILNMEFAKKLE 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + + VS A+ I + + S G + +
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYVSYAELIEDKIIAENADSIFELSEGELSYPIEAGD 358
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
S+ + + E+V + + + + ++++ ++
Sbjct: 359 KSYLILVELKSIQPVKIPEFDSIKEQVNKVWIKQNIADVNLNMIKDLAKEYNSDQENIKE 418
Query: 418 VDFAGKDVKGKEVAAIPYKEQ-----LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ G + K + + + S + D Y SI
Sbjct: 419 LKATGIKISKKNYIRSEMENELTLTPEILLSIFNTKIGSNTPVFQIGDAVYFAHIKSRSI 478
Query: 473 PARDRKLEEVLTD--VKKDWKTVKTAEEVS 500
K V ++ + + K E ++
Sbjct: 479 DELTAKNIRVNSEKNIIYNIKNSVIDELIN 508
>gi|193213470|ref|YP_001999423.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum
NCIB 8327]
gi|193086947|gb|ACF12223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum
NCIB 8327]
Length = 701
Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats.
Identities = 70/705 (9%), Positives = 185/705 (26%), Gaps = 93/705 (13%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
+ +R + V I + + WG++ S V +V + +P + + +
Sbjct: 4 MGKLRDKT-HIVLFILVAAFVGLIVFEWGMNFTGPKQSRGGDVGAVNGEPIPAAEYEQLY 62
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-- 118
Q+ V GL ++ + +V ++Q ++ ++ V
Sbjct: 63 NMVSTSFRQR-NPGVEVTSRIDAGLREQAWNMVVDQTLINQLLKKYAVQVSDQEVLEAVN 121
Query: 119 -------IARSPLFHGKDNKFSHDVFVSRLAREGINEKEY--IDHYTKMLSRTDVVGMFV 169
I R K + ++ E + + L ++
Sbjct: 122 SEVNPPGIIRQNFTDPKTGQIDRELLEKARQDPQAKEFWLKAQEMVRRELMINKLLMDLK 181
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH--VPAIADPSNAVLTQWFEKYKDNYRAP 227
++ + + + + S +I + + +T W+E +K ++
Sbjct: 182 SMAIVTDPEVTELVQRQYTTFSGSFIPFPYDFAGPASNFPVKDEEITAWYEAHKGQFQQE 241
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE-------------- 273
+ ++ F + + + E+ + E ++
Sbjct: 242 PTRSAEFVFFPLTPSAQDSLRAKKEIDGLVSEFASAPDEAEFVKIQSDIPDAVNVTRTRA 301
Query: 274 -------------------QLVFPNQKEADEAFQSLKKGKKFIQLAEE-------QGKSL 307
Q+V P + +K +A
Sbjct: 302 DFSLEGGKKIFDSPKLAPGQIVGPVADQGYYRLLKIKSVSTGEPMASASHILIRVNPADK 361
Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV--IHGSFGYVIAHVSNIKPSFTVSFQ 365
+ + G I D + F+ + P FT +
Sbjct: 362 ASVESGQALARKILDELKNGASFAQLAAKYSQDPGNAQRGGFLGWFTKERMVPEFTQAVF 421
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
K +T+ + + + E+ R+ K S+ +
Sbjct: 422 SGKPGQVVGPVLTRFGLHIIKIDGFDNRQIVCS----EVVRQLKPSSLTSESIKRKAMVF 477
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDP-------------LSKDHTVALPDGSYMWVQIKESI 472
+ + + L ++ + A Q+ ++
Sbjct: 478 RDDAESKGFAETAKLQKLDVVQTGDFTRQTLVSKLGMDEDVASFAFSSKDGAISQVIKND 537
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSK---------ANQLVLEYSK-EGKNFRDIGK 522
D + E + ++ + E SK G + I +
Sbjct: 538 NGFVVMKLLTKNDTGYRLLDDELKEMIKAELVREKQGTALKAKLAELSKSSGGSLDAIVQ 597
Query: 523 NL-GASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+ G +T+ I+ D +G D + + + + P++ + + K+
Sbjct: 598 SNPGLRKITSGIISWRDGNIDGYGSDRRLVEAMAGMELNKL-SAPVQTSNGFALVKLDGR 656
Query: 580 KVG----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
++ EK + + L ++ + L + + + +
Sbjct: 657 QLPYGLDLEVEKKRILPQLMKIKQEQLFNEYFEAARRTAKIEDNR 701
>gi|224436614|ref|ZP_03657623.1| hypothetical protein HcinC1_01640 [Helicobacter cinaedi CCUG 18818]
gi|313143113|ref|ZP_07805306.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313128144|gb|EFR45761.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 492
Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats.
Identities = 71/395 (17%), Positives = 144/395 (36%), Gaps = 13/395 (3%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGL---SDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++K + + I V + F+ G+ F S V VG + + F +
Sbjct: 1 MQKHKKWLIVTI--WVSAIAFIGAGMVNWGSYGFGSSNDK-VARVGDIDIHLAEFQREYA 57
Query: 62 QELGMISQ--KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ L SQ + G +++ +A+ G+ + L L+ + D+GL V EI
Sbjct: 58 RILNEFSQISQFGGMLDEAQAKQFGIPQMALQRLIQQVQILNLANDLGLVVSDKEVGEEI 117
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF---VGGMRPSN 176
+ ++ +FS +V+ L +G++ E+ + K+L+ + + G
Sbjct: 118 VNAKVYVDDKGEFSQEVYRKALKEQGMSPSEFEEMVRKILTTQKLFSVMNITQVGPMLPI 177
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ A V + + L ++EK +N+++P +I YIL
Sbjct: 178 SSSEMAALEMANAVRDRLRVEILPMDKVNIEIEDDELKAFWEKNAENWKSPMEFKIEYIL 237
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ E Q ++ + + + +A K+ +
Sbjct: 238 VPFASQNPTDEDLTKHYQDFKSDYLDENGNLLSFEESKEKLIKDVQKIQAESVAKREYRD 297
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
++ ++G+ LS F + D+ + D +A+ G I G+V + +
Sbjct: 298 LKNKSKKGEILSLKENERFFVKNGVDLVIED--MKVAQVGQVLKPIEVDKGFVTLRILDK 355
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
KPS SF+E K + +K EK+ K
Sbjct: 356 KPSVQKSFEEAKAEAKVLFESSKKREKLLALAKER 390
>gi|313206481|ref|YP_004045658.1| ppic-type peptidyl-prolyl cis-trans isomerase [Riemerella
anatipestifer DSM 15868]
gi|312445797|gb|ADQ82152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Riemerella
anatipestifer DSM 15868]
gi|315023578|gb|EFT36582.1| Peptidyl-prolyl cis-trans isomerase [Riemerella anatipestifer
RA-YM]
gi|325336073|gb|ADZ12347.1| Peptidyl-prolyl cis-trans isomerase, PpiC-type [Riemerella
anatipestifer RA-GD]
Length = 708
Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats.
Identities = 84/711 (11%), Positives = 180/711 (25%), Gaps = 108/711 (15%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L IRK R W+ F+ + + FL+ S + + V +++ +
Sbjct: 4 LGEIRK--RPWILIGFIAIALLAFLVNPDSLDKVFGKDPNILGKVNGEEITRDEYNEQLM 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ G + VGL+++ LV + Q E +GLE W ++
Sbjct: 62 LMRNQAESQ-GQPL-------VGLEEQAWQTLVQSKLIKQQFEKMGLELTEDFFWNQLQY 113
Query: 122 SPLFHGKDNKFSHDVFVSRLA--------------REGINEKEYIDHYTKMLSRTDVVGM 167
P+F F +E + +
Sbjct: 114 DPMFSQNPQNFDAKGNFKLTEIKKEIEGLRESGRVQEYNQWLNIRKTIEYRMMARQLFAN 173
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDY--IVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
G+ + + + +D+ I N ++ L + +K+ ++
Sbjct: 174 VTNGITVGKKEAELIMKNRDQVADIDFVKIDYNTFAQKNPVKVTSEDLANFIKKHPVAFK 233
Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV------------- 272
A + + +LF ++ EL+ Y E + + ++
Sbjct: 234 AEASRNLGVVLFPAKPSAIDDSLTLKELRKLYNGEGENFLNSPSDSMFVEINSEAPVKYG 293
Query: 273 ---EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI 329
EQ V + + + + + L+ S + K + + D
Sbjct: 294 FVSEQEVPQEAQAFVKTATVGQVYGPYKSGGKYYVTKLAGKSEATLPKHILIAFAGTDVA 353
Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV----- 384
+ V FT + Q
Sbjct: 354 KQDPSIKRTKEEAKKLADSIATQVKADPAKFTQFVSFSADKGSAQQGGMLQWVLPGKSGF 413
Query: 385 ------------------------------------KEDYKRLEEFLALGTSMDEISRRE 408
+ ++ A + +++ +
Sbjct: 414 VKPFADWVESNPKGAVGVVETQFGYHVMVNENKMPVYKIANLAKDIRASKETQNKVYAQA 473
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL---------- 458
+ F K+ +++ R G+ L D +
Sbjct: 474 NTFIQQIQGKSFNEFANLAKKSNYQFANPKMVGRFQGQIQGLGTDKDEEILAWAFNKDTD 533
Query: 459 ---------PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
+G Y+ + A E V ++ K A+++ K N
Sbjct: 534 KGDTNIFTTSNGDYVVAYLNGKQEAGLADPESVREQIEPIVKNQLLAKKIIEKLNA---- 589
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
+ + +I K GA + + F V N
Sbjct: 590 --SKSLSLDEIAKQFGAVKESGQINMLTPSLGMAMEPKVAGAAFGVAPNKVSKPIEGNTG 647
Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
YVV K S+ + +F+ L Q + S++ L+ + +
Sbjct: 648 VYVVVKKKVSENKQPGDAKQFVQMLEQQNAQMFTQSLLKSLQDNADIKDYR 698
>gi|154148500|ref|YP_001406386.1| putative peptidyl-prolyl cis-trans isomerase D-like protein
[Campylobacter hominis ATCC BAA-381]
gi|153804509|gb|ABS51516.1| putative peptidyl-prolyl cis-trans isomerase D-like protein
[Campylobacter hominis ATCC BAA-381]
Length = 487
Score = 111 bits (276), Expect = 4e-22, Method: Composition-based stats.
Identities = 68/402 (16%), Positives = 152/402 (37%), Gaps = 20/402 (4%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ ++K ++ + +++ + F+ WG D + S S++V VG + F
Sbjct: 1 MINWMQKHKKSLIPTVWISTIAFVGAGFVGWGAYD--LNKSRSTSVAKVGDTAISIKEFQ 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
N + + + E+A+ + LD+ ++ L+ A L F +D+G+ A V
Sbjct: 59 NKYSEVYNYLKSISDGKFTDEQAKKMHLDEMAINALIQDAILLNFAKDLGINASDEEVAR 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI S F D KFS ++ + + G+++ EY K++ + ++
Sbjct: 119 EIINSDNFKT-DGKFSKKLYENAMKNAGLSQNEYEKELKKVIILDKLKKAISIKPNADDI 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ A F + + + N ++ L ++EK K Y + +
Sbjct: 178 EMLTASEFMQDKVEIAIVDQNVST----ITFNDDELKDFWEKNKSKYLTQKTYEMDAYFV 233
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + + L+ +EKN++ Y + + + +EA+ + +
Sbjct: 234 ----EPENKNVDEKTLREFFEKNRDLYRNENDKLMS------FEEANASVLNDYLTDFNK 283
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
A ++ + + + K + D K G+F + G +I ++ I
Sbjct: 284 DEAIKKYLDVKKGKIFTNEKLVLNDNDEIIKNLQNMKIGEFNKPVKYKNGNLITKLTKIN 343
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
+ F KK + + K +E +K+ + +A+
Sbjct: 344 EPQIMEFDAAKKLAGSDLFKAKKAEDLKKLAENSLGKVAMKD 385
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 41/345 (11%), Positives = 101/345 (29%), Gaps = 13/345 (3%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
Q + + + LKK A++ + + + I D +++ F+
Sbjct: 147 SQNEYEKELKKVIILDKLKKAISIKPNADDIEMLTASEFMQDKVEIAIVDQNVSTITFND 206
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
+ D Y+ + F + + + K + + + +L
Sbjct: 207 DELKD--FWEKNKSKYLTQKTYEMDAYFVEPENKNVDEKTLREFFEKNRDLYRNENDKLM 264
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
F S+ + + K + + +
Sbjct: 265 SFEEANASVLNDYLTDFNKDEAIKKYLDVKKGKIFTNEKLVLNDNDEIIKNLQNMKIGEF 324
Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
+ V +G+ + ++ + + + + D K AE++ A + + +
Sbjct: 325 NKPVKYKNGNLIT-KLTKINEPQIMEFDAAKKLAGSDLFKAKKAEDLKKLAENSLGKVAM 383
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
+ F TTN I + K I +F+ + L Y
Sbjct: 384 KDIGFVSKASEN-----TTNGILSNEEFAK-----FIGSLFASDKQDGYVLYDNKALIYK 433
Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ T + S L++++N L + +I+ L+ +Y +
Sbjct: 434 ITSQTLDNPMSAKYISALESSLSKLINTKLQEDLISVLQKRYEIQ 478
>gi|268680048|ref|YP_003304479.1| peptidyl-prolyl cis-trans isomerase D,- like protein
[Sulfurospirillum deleyianum DSM 6946]
gi|268618079|gb|ACZ12444.1| putative peptidyl-prolyl cis-trans isomerase D,- like protein
[Sulfurospirillum deleyianum DSM 6946]
Length = 486
Score = 111 bits (275), Expect = 4e-22, Method: Composition-based stats.
Identities = 69/511 (13%), Positives = 169/511 (33%), Gaps = 39/511 (7%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ +++ + V I++ + F+ WG D + +++V VG + + F
Sbjct: 1 MITWMQRHKKYLVVTIWISTIAFVGAGFVGWGAYD--LNQDRAASVAKVGNRTISVQEFQ 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+++ + + + E+A +GLDK ++ +L++ L + +++GL
Sbjct: 59 SAYASHYNFYNNLLQGQLTQEQAEQMGLDKIVMSSLINQTLLLNYADELGLLVSKEETME 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ +P F ++ F+ +++ + L I +Y K + T + +
Sbjct: 119 RLKNNPNFQ-ENGVFNKELYYTILKSNRIKPNDYEHELAKEILHTKL----ENIFKLPAS 173
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + ++EK K NY + + +
Sbjct: 174 DKEIEMFASAFFMEDRLAIETISLNANEVSADEEAIKAYWEKNKANYLTQKSYTLELLNL 233
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + L+A Y + K Y + + + + D ++ KK
Sbjct: 234 PPSKTPFDDKT----LEAFYAEEKHNYQHADGKLMLFEEAKEKLAIDLRLKNDKKSALES 289
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
LA ++G+ + + + + + + +A K + + + YV+ V IK
Sbjct: 290 FLAFKKGEINATETKVVYDTDSLFPMD----KIQIAAKDEVLKPVIINNQYVVIRVKEIK 345
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+S++ KK+ +N + L E K+
Sbjct: 346 FPEPMSYEMAKKEASNDL------------------LKTLKEEALEKKAHAKVEQFKGND 387
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ F +D K + + D + +I E
Sbjct: 388 IGFVSRDSVKSIAGLNEAKSAEFLSHVFDNTAKKGYKII---DDKAIVYEILEQKLLNSD 444
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
K+++ ++ + + +K E + +L
Sbjct: 445 KIKQHVSLISDNVSQMKQKELNQNLIKKLAA 475
>gi|154175271|ref|YP_001408420.1| WbnF [Campylobacter curvus 525.92]
gi|112802934|gb|EAU00278.1| WbnF [Campylobacter curvus 525.92]
Length = 485
Score = 111 bits (275), Expect = 5e-22, Method: Composition-based stats.
Identities = 82/503 (16%), Positives = 183/503 (36%), Gaps = 22/503 (4%)
Query: 1 MLEIIRKASRTWVAKI---FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ +++ + V I + + F+ WG D + + +++V +VG + + F
Sbjct: 1 MITWMQRNKKYLVVTIWISVIAFVGAGFVGWGAYD--LNNNKATSVATVGHRSISVQEFQ 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ Q + + E+A +G++ + ++ L F +DIGL +
Sbjct: 59 QKYNQIYEYHNNISDGKLTQEKADELGIENEAFQAVLQENLLLNFADDIGLSVSDDDILK 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I F D FS +++ L R IN +Y + + + ++
Sbjct: 119 YIIADKNFQN-DGVFSKNLYYDVLRRARINPNDYEKNLKTAILLDKLYYALNLPATKKDV 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ A F + S++ I N + + + +E K+NY + Y++
Sbjct: 178 EMMMASLFMQDKLSIEMIEANENE----IKFNEDEIKELWESNKNNYMT----KTLYVID 229
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ + KK +I+ L A Y +NKEKY + + + + + D + K
Sbjct: 230 TLYIESKKDDINQTALSAYYNENKEKYKNSDDKIMPFDEVKEEVAKDYNIEQSKTNALEK 289
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+A ++G+ ++ S+ + + AK GD GY+I + +
Sbjct: 290 YIAVKKGELATNGSMSLNEDN----ATFSIDEIRGAKVGDVIKPFVYDNGYLIVKIKSTT 345
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +S+++ K+ I + K KE + + +I + ++ +
Sbjct: 346 PPQPMSYEQAKEQILEIYKEQKL----KELVENKAKTAMKDFHGKDIGFVSRDMNNTIDG 401
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+D ++ P K+ + + + + + Q+ E +
Sbjct: 402 LDRDETRAFVDQMFESPNKKGYVILGNKAVIYDILEQKLLTNSVNNNYKQLTEQNVMLLK 461
Query: 478 KLEEVLTDVKKDWKTVKTAEEVS 500
E + +K+ K + E V
Sbjct: 462 NNELIKDLIKELQKRYEIKEYVK 484
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/299 (12%), Positives = 98/299 (32%), Gaps = 16/299 (5%)
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ ++ + K + + T+ + K DI +E
Sbjct: 193 EMIEANENEIKFNEDEIKELWESNKNNYMTKTLYVIDTLYIESKKDDINQTALSAYYNEN 252
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
++ ++ + +E+++ I ++ KG+
Sbjct: 253 KEKYKNSDDKIMPFDEVKEEVAKDYNIEQSKTNALEKYIAVKKGELATNGSMSLNEDNAT 312
Query: 444 FGKDD----PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
F D+ + + D Y+ V+IK + P + E+ + + +K K E V
Sbjct: 313 FSIDEIRGAKVGDVIKPFVYDNGYLIVKIKSTTPPQPMSYEQAKEQILEIYKEQKLKELV 372
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+KA + ++ GK+ + +++ T + ++R + + Q+F P +
Sbjct: 373 ENKAKTAMKDFH--GKDIGFVSRDMN---NTIDGLDRDET------RAFVDQMFESPNKK 421
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-LTQMMNKDLLDSVIAYLKSQYSVT 617
+ Y + + + + + N +L+ +I L+ +Y +
Sbjct: 422 GYVILGNKAVIYDILEQKLLTNSVNNNYKQLTEQNVMLLKNNELIKDLIKELQKRYEIK 480
>gi|300770131|ref|ZP_07080010.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762607|gb|EFK59424.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 703
Score = 111 bits (275), Expect = 6e-22, Method: Composition-based stats.
Identities = 72/635 (11%), Positives = 190/635 (29%), Gaps = 76/635 (11%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
+ +R + V + + V FL+ + + A F S + V SV + + + F
Sbjct: 4 MTFLRNRAGLIV--TVIGIAIVAFLLGDVVRTGAPFWASSQNQVGSVNGESISYPDFNVQ 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+Q M Q++G + + ++ + +++ + V+ L Q +E IGL + +
Sbjct: 62 VEQASAMFQQQMGGGSLTPQMKNYAV-QQVWNQFVTKEILKQEVEKIGLSVGKDELNALV 120
Query: 120 AR-SPLFHG-------KDNKFSHDVFVSRLAR--------EGINEKEYIDHYTKMLSRTD 163
+P + + +F L+R + ++ T
Sbjct: 121 NGPNPSYQIVQAFTNPQTGQFDKAQLNMFLSRLKSDGTPEMQQQWEMLLEGVRDERMGTK 180
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKD 222
+ + ++L + + + Y++L+ + ++A +++++ K+
Sbjct: 181 YTNLLNNSIYVTSLEANDDYIQRNKLANFKYVLLDYSSIKDADIKLTDADYKEYYDENKN 240
Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
++ PE R + ++ + + + + + T + L +
Sbjct: 241 AFKNPEETRSIEYVLVDGRPNQRDTAATLAVVQKLKADLAA------STNDSLFASVNSD 294
Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ LKKG+ L + ++G F + +++ + +
Sbjct: 295 TKYPYTYLKKGQVSPALDSVLFNAPVGATVGPFLSNGVYEIAKIKDATFSPDSVKASHI- 353
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
+ KA
Sbjct: 354 ---------------------LLNPTAEGGVDKAKAKADSIKNLI--------------- 377
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
++ E + + G G ++ + + + D +
Sbjct: 378 --AKGEAFGPLAIQFSQDEGSKANGGDLGTFGRGRMVPEFDKAVFEGKTGDVLIVNSQFG 435
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
V+I++ I ++ +T + +KAN K+ NF+ +
Sbjct: 436 VHIVKIEKQIGNSKVVKAAIVDKTIS--SGKETIDAAYAKANSFFSALDKD--NFKAVAT 491
Query: 523 NLGASLLTTNQINRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
G T ++ MDN + + F V E +++V ++ + +
Sbjct: 492 KQGLKDATAKRVTAMDNTLDGNEVPRELLRWAFEAKKGDVTDKVYETDHTFIVARLADIQ 551
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ + + + + + LK +
Sbjct: 552 PKGILPLEAIKADIETPVRNLVKA---RQLKEKAE 583
Score = 94.2 bits (231), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/339 (12%), Positives = 97/339 (28%), Gaps = 22/339 (6%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ G IQ ++++G + LG+F + + ++F +
Sbjct: 378 AKGEAFGPLAIQFSQDEGSKANGGDLGTFGRGRMV-PEFDKAVFEGKTGD-----VLIVN 431
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
H+ I+ S + + K + + ++
Sbjct: 432 SQFGVHIVKIEKQIGNSKVVKAAIVDKTISSGKETIDAAYAKANSFFSALDKDNFKAVAT 491
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
++ + V + G EV +LL F D D +++
Sbjct: 492 KQGLKDATAKRVTAMDNTLDGNEVP-----RELLRWAFEAKKGDVTDKVYET-DHTFIVA 545
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + P LE + D++ + + A ++ KA + K + +G+ LG
Sbjct: 546 RLADIQPKGILPLEAIKADIETPVRNLVKARQLKEKAENAL----KGASSIDQVGQKLGK 601
Query: 527 SLLTTNQINRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP- 583
S + I + + VF I+ V +V
Sbjct: 602 SPIQVENIVLANPVIPGVALENAVVGTVFGLQPNK-PSTAIKGNQGVYVVQVNGFVNPKN 660
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
E L + +S+ L+ + + +
Sbjct: 661 QVATEIKAQQKQLIASKAQRSWNSIFKALQDKAKIDDNR 699
>gi|262199092|ref|YP_003270301.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
DSM 14365]
gi|262082439|gb|ACY18408.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
DSM 14365]
Length = 650
Score = 110 bits (274), Expect = 6e-22, Method: Composition-based stats.
Identities = 70/655 (10%), Positives = 177/655 (27%), Gaps = 52/655 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALF---SVSGSSTVVSVGRQKVPFSSF 56
MLE +R+ SR+++ I ++ F+ +G + + + ++V ++V +
Sbjct: 1 MLEQLRQNSRSFLIWILFGIIIAAFVFTFGTQSDVSFSCTGPSADYAMTVDDEEVGIPAL 60
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
K + LD L+ L Q + G +
Sbjct: 61 RYGLNTIGRSGQSKAQRA------------QFALDGLLKREILAQASAEAGFHVSNEMAQ 108
Query: 117 GEIARSPLF------HGKDNKFSHDVFVSRLAREGINEK------EYIDHYTKMLSRTDV 164
I ++ GK F F + +N ++I+ + L ++
Sbjct: 109 IAIREGDIYVLTMPVDGKSLYFDSGYFDDERLKAWVNGMGLSSLGQFIEEQQRELEAQNM 168
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ + + + ++ + + A ++ + +
Sbjct: 169 LELIRSAAVSTPEEARARFIYENTKATLAVVQFRPGDYIRKIVLTPADTQKYLDDNRAEV 228
Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
+A + E + + + A +E + + ++
Sbjct: 229 QAKYDADAALYKGRGKEVQIRQIFFARQKPAVLRPGQEASEPAAGEEEDPALVAARQARV 288
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK-GDFTPVIH 343
+L+E++ LG S+E + + G+ + VI
Sbjct: 289 RIVGGADFAAVASELSEDERTKAKGGYLGWRSQENPGLGARELADGIKELGAGEVSEVIS 348
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
G+ + + ++ +A ++ A E + + +
Sbjct: 349 VPRGFYVFKIEGVREGDLSF-----DQVALELAEQMAVESYAKLAAQR-DAEEALAKAKA 402
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+S E L + + + P + L R D L D
Sbjct: 403 VSTGEGSAIEQLYPMQQQQQQQQMNLQDLPPEILEQLNRRGSLDV-LGPDRPAEATWQGG 461
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ P V+ TA + L + +
Sbjct: 462 AQPAVPGDQPRATTTRAAAPGAVQATATAQATATGDAEAGPAPALSTIEVPVPRDLVTPQ 521
Query: 524 LGASLLTTNQINRMDN---ENKFFGYDGISQVF-SGPVEMVKCFPIENGLSYVVFKVTNS 579
+ + R + + + +F S V E ++ V ++
Sbjct: 522 A----RSVGPLPRDPDGMIMGVGKSEELMKAIFTSMEPGKVADQVYEVSDTFAVVELKKL 577
Query: 580 KVGPVQEKDKFISYLTQMMNKD----LLDSVIA----YLKSQYSVTVHDNLIQRY 626
++ +K TQ++ L+S + L ++ + ++ + +
Sbjct: 578 DEPDLESFEKDARMRTQILASQRGIIELNSWLQSRCEALVAEQKIRLNLEFLNQV 632
>gi|330721964|gb|EGG99902.1| Peptidyl-prolyl cis-trans isomerase ppiD [gamma proteobacterium
IMCC2047]
Length = 471
Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats.
Identities = 66/480 (13%), Positives = 169/480 (35%), Gaps = 32/480 (6%)
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + + +D R + R Y+ +N + A S+A + ++E
Sbjct: 1 MLIQQMQLGIASSAFITPAEIDLLARIDRQTRDFSYLTINANELAADIVISDAEVQAYYE 60
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ +Y + E +I Y+ + I++ E++ Y++ + + + R ++
Sbjct: 61 ENLADYMSEESLKIEYLELKQADFASNIDVDEAEIEQLYQQETDALAAQQERRAAHILIT 120
Query: 279 NQKEADEAFQS--------LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLA 326
+ + + +K G+ F +LA+ + + LG K
Sbjct: 121 EEARSSNEAEQLIIELQNKIKAGEDFAELAKRYSEDPGSAENGGDLGFVEKGAFVPE--F 178
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
+ + +G+ + ++ FGY + + ++ F+ ++ +A ++R KA E+
Sbjct: 179 EQVLFSLNEGEVSDIVETEFGYHLIRLEELRTPEAEPFEMARERLAGELRFRKAEEEFVA 238
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+ L+ + E ++ + + + A K + +
Sbjct: 239 AAEELQNDSFSAGDLVEPAQNQGLSIQTTEFFSR-----QQGSGIAAFEKVRRVAFSDEL 293
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ + L +++K+ P++ + LEEV +D++ K + Q+
Sbjct: 294 LTEGNNSDLIELSKDHVAVIRVKQHNPSKPQALEEVASDIRSTLKARAAQQNAQKMGEQI 353
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV----EMVKC 562
++E ++GK + + G L + +NR+ N+ + + ++F+
Sbjct: 354 LVEL-RDGKTLQQASDDYGYPLNSYQGVNRIAND---VDSEILDELFALAKPRDSGATTG 409
Query: 563 FPIENGLSYVVFKVTNSKVGPVQ-----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
I + +V+ + G EK L Q L ++ + +
Sbjct: 410 SLINSQGDFVILSLNKVSEGDASALSDPEKQAMSRILAQQTGIQTLKEFVSGQLASAEIE 469
>gi|227538586|ref|ZP_03968635.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241505|gb|EEI91520.1| peptidylprolyl cis-trans isomerase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 703
Score = 110 bits (274), Expect = 7e-22, Method: Composition-based stats.
Identities = 71/635 (11%), Positives = 190/635 (29%), Gaps = 76/635 (11%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
+ +R + V + + V FL+ + + A F S + V SV + + + F
Sbjct: 4 MTFLRNRAGLIV--TVIGIAIVAFLLGDVVRTGAPFWASTQNQVGSVNGESISYPDFNVQ 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+Q M Q++G + + ++ + +++ + V+ L Q +E IGL + +
Sbjct: 62 VEQASAMFQQQMGGGSLTPQMKNYAV-QQVWNQFVTKEILKQEVEKIGLSVGKDELNALV 120
Query: 120 AR-SPLFHG-------KDNKFSHDVFVSRLAR--------EGINEKEYIDHYTKMLSRTD 163
+P + + +F L+R + ++ T
Sbjct: 121 NGPNPSYQIVQAFTNPQTGQFDKAQLNMFLSRLKSEGTPEMQQQWEMLLEGVRDERMGTK 180
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKD 222
+ + ++L + + + Y++L+ + ++A +++++ K+
Sbjct: 181 YTNLLNNSIYVTSLEANDDYIQRNKLANFKYVLLDYSSIKDADIKLTDADYKEYYDENKN 240
Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
++ PE R + ++ + + + + + T + L +
Sbjct: 241 AFKNPEETRAIEYVLVDGRPNQRDTAATLAVVQKLKADLAA------STNDSLFASVNSD 294
Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ LKKG+ L + ++G F + +++ + +
Sbjct: 295 TKYPYTYLKKGQVSPALDSVLFNAPVGATVGPFLSNGVYEIAKIKDATFSPDSVKASHI- 353
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
+ KA
Sbjct: 354 ---------------------LLNPTAEGGVDKAKAKADSIKNLI--------------- 377
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
++ E + + G G ++ + + + D +
Sbjct: 378 --AKGEAFGPLAIQFSQDEGSKANGGDLGTFGRGRMVPEFDKAVFEGKTGDVLIVNSQFG 435
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
V+I++ + ++ +T + +KAN K+ NF+ +
Sbjct: 436 VHIVKIEKQVGNSKVVKAAIVDKAIS--SGKETIDAAYAKANSFFSALDKD--NFKAVAT 491
Query: 523 NLGASLLTTNQINRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
G T ++ MDN + + F V E +++V ++ + +
Sbjct: 492 KQGLKDATAKRVTAMDNTLDGNEVPRELLRWAFEAKKGDVTDKVYETDHTFIVARLADIQ 551
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ + + + + + LK +
Sbjct: 552 PKGILPLEAIKADIETPVRNLVKA---RQLKEKAE 583
Score = 93.8 bits (230), Expect = 8e-17, Method: Composition-based stats.
Identities = 43/339 (12%), Positives = 97/339 (28%), Gaps = 22/339 (6%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ G IQ ++++G + LG+F + + ++F +
Sbjct: 378 AKGEAFGPLAIQFSQDEGSKANGGDLGTFGRGRMV-PEFDKAVFEGKTGD-----VLIVN 431
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
H+ I+ S + + K + + ++
Sbjct: 432 SQFGVHIVKIEKQVGNSKVVKAAIVDKAISSGKETIDAAYAKANSFFSALDKDNFKAVAT 491
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
++ + V + G EV +LL F D D +++
Sbjct: 492 KQGLKDATAKRVTAMDNTLDGNEVP-----RELLRWAFEAKKGDVTDKVYET-DHTFIVA 545
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + P LE + D++ + + A ++ KA + K + +G+ LG
Sbjct: 546 RLADIQPKGILPLEAIKADIETPVRNLVKARQLKEKAENAL----KGASSIDQVGQKLGK 601
Query: 527 SLLTTNQINRMDNENKF--FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP- 583
S + I + + VF I+ V +V
Sbjct: 602 SPIQVENIVLANPVIPGVALENAVVGTVFGLQPNK-PSTAIKGNQGVYVVQVNGFVNPKN 660
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
E L + +S+ L+ + + +
Sbjct: 661 QVATEIKAQQKQLIASKAQRSWNSIFKALQDKAKIDDNR 699
>gi|21673044|ref|NP_661109.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium tepidum
TLS]
gi|21646111|gb|AAM71451.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium tepidum
TLS]
Length = 700
Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats.
Identities = 80/719 (11%), Positives = 181/719 (25%), Gaps = 122/719 (16%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
+ +R + V + + + WG+ + + V + + + + +
Sbjct: 4 MSKLRDKT-HIVLFVLVAAFLALIVFEWGM-NFTGPTRKAGVAGKVNGESISMNEYEALY 61
Query: 61 KQELGMISQ-KIGFVVNS-------ERARSVGLDKKILDNL------------------- 93
+ Q G + S E+A + +D+ +L L
Sbjct: 62 NNIVAGFRQSNPGVEITSGLDAKFREQAWNYVVDQTLLAQLLKKYGITVTDQEVLDAVNN 121
Query: 94 -------------------VSGATLDQF-----IEDIGLE-------------------- 109
+ L+Q +D L
Sbjct: 122 PVNPPAIIRQNFTDPRTGKIDRQLLEQARSDPKAKDFWLNAQEAIKRELMVNKLVMTLRT 181
Query: 110 ---ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+ + R F F + A K+ +
Sbjct: 182 MVFVTDPELTEVVQR--QFTTFAGSFIPFPYSYAGAETNFPVKDDEIKAWYDSHKEQFRE 239
Query: 167 MFVGGMRPSNLLLDQAKR---FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
V L +++ + + + L
Sbjct: 240 EPVRSAEFVFFPLTPSRQDSLQVKKEIDGLIPQFAAAKSDSEFVKIQSDLPNSANVTLSR 299
Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
+ + + DE K K + + ++
Sbjct: 300 ADFSPAAGQALFSSPKLVPGQIVGPIADEGYYRLLKIKSVTTGEPVASASHILIRLNPAD 359
Query: 284 DEAF-----------QSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADS 328
+ LK G F LA + + + +G F+K+ + A +
Sbjct: 360 KAEAARAMGLLKKISEELKGGASFASLAAKYSEDPGSARNGGFVGWFTKDRMV-PQFAQA 418
Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
+ K G + FG I + F + + R KAS + E
Sbjct: 419 V-FAGKPGQIVGPVQTQFGLHIIKIEG--------FDNRRIVCSEVARQIKASTQTSETI 469
Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
KR + K +++ + + + A+P + + K
Sbjct: 470 KRQAQAFLTEAKSKGFEAAAKAQRLEVGKTGDFTR----QSLLAVPGMGEAITGFAFKAK 525
Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
+ G + + ++ + ++ +K + K + SK LV
Sbjct: 526 DSDISDVLDAEKGFVVAKLLTQNDTGYHQLDAQLKEMIKTELVREKQGAALKSK---LVA 582
Query: 509 EYSKEGKNFRDIG-KNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPI 565
G + I K+ +T+ +I D +G + + + + P+
Sbjct: 583 LSKSSGGSLDAIAAKDPSLRKITSKEIRWRDGYIDGYGVDPQLVEGMAGMKLNTLSQ-PV 641
Query: 566 ENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ Y + ++T+ ++ P EK K + L Q + L + + +
Sbjct: 642 QTSGGYALVQLTSRQLAPGTDLAAEKQKVLPQLMQARQQQFLSEYLQSYRRNAKIEDFR 700
>gi|160871799|ref|ZP_02061931.1| putative peptidyl prolyl cis-trans isomerase D [Rickettsiella
grylli]
gi|159120598|gb|EDP45936.1| putative peptidyl prolyl cis-trans isomerase D [Rickettsiella
grylli]
Length = 484
Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats.
Identities = 36/238 (15%), Positives = 85/238 (35%), Gaps = 3/238 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFIN 58
ML+ IR S+ W+ + +L + F +WG+ + + V + Q + S F
Sbjct: 1 MLQSIRDKSQGWITNTVIGLLIIIFALWGIHGYVVFHESGNNKIVAKIAGQLLRQSDFEK 60
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+++ + + ++ + L ++++ L +
Sbjct: 61 IYQRAYQQNRDYLNQSFSHDKKKVEALKEQVVREWEITQVLVYAALQSKYRISQTLIDSF 120
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ + P F +FS + F S L + E+++ KML V
Sbjct: 121 LLQVPAFQSAG-QFSIEKFYSVLRANDYTKLEFLEEIKKMLLINQVQQGITQSAFVLPQD 179
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + + R Y+++ + ++ + ++++ K +R PE I Y+
Sbjct: 180 IRNYIEYNHQKRDFSYLIVPYSMFLNQQNIPDSRIFAYYQENKQLFRQPEQVSIEYVQ 237
>gi|78777490|ref|YP_393805.1| hypothetical protein Suden_1292 [Sulfurimonas denitrificans DSM
1251]
gi|78498030|gb|ABB44570.1| conserved hypothetical protein [Sulfurimonas denitrificans DSM
1251]
Length = 487
Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats.
Identities = 69/413 (16%), Positives = 137/413 (33%), Gaps = 13/413 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ +++ + + I++ + F+ WG + V VG ++
Sbjct: 1 MITWMQRHKKYLIITIWISTIAFVGAGFVGWGQYSY---GDKAGAVAKVGSVEITMGELQ 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
S+ SQ + E+A+S GL + L+ L A + + LE +
Sbjct: 58 KSYSNIYAQYSQMFKGEFDEEKAKSFGLQSQALNFLTQQALVLNLAKSYNLEVSDEELLK 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI F KD F DV+ L++ I KEY K L ++ + ++
Sbjct: 118 EITSKDYFF-KDGVFDKDVYKDVLSKNNIKTKEYEADIKKEL----LIRKTLSLLKIQTK 172
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+Q + + I D SN L ++EK ++N+ + I YI
Sbjct: 173 ESEQKIIDTAFSIADKIDYKVLNANQIILDTSNESLKSFWEKIQNNFMSEVSYDIKYIKH 232
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D E N+ K+ + + +A E+ + K
Sbjct: 233 DKKSNEYNDAALNEYYSENKISLKDGEGKIIPFEDAKEKIKYELDAKESKKEALKKYVSY 292
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ E + + ++ + ++I L F+ I Y I +
Sbjct: 293 KKGEIEPSEIQTATIS--ASNNSFGTEAFEAISKLTSTSPFSKPIMVEDNYFIFELVTTN 350
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
P+ S++E K ++ + K++E K+ + + +
Sbjct: 351 PAKPKSYEEAKSEVLPIYESEQKKIKLEELAKKSFATFNGKITDYITANDSSL 403
>gi|224417810|ref|ZP_03655816.1| hypothetical protein HcanM9_00899 [Helicobacter canadensis MIT
98-5491]
gi|253827151|ref|ZP_04870036.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313141352|ref|ZP_07803545.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|253510557|gb|EES89216.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313130383|gb|EFR48000.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 489
Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 66/471 (14%), Positives = 162/471 (34%), Gaps = 19/471 (4%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ ++K + + I+ + + F+ WG D S S+ V VG+ KV +
Sbjct: 1 MISFMQKHKKYLMITIWVSTIAFVGAGFVGWGSYDF---SSTSNAVAVVGKTKVSINEMQ 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + G+ +Q +G ++ E+A+ +G++++ L+NL+ A + + D+GL A +
Sbjct: 58 REYSRLYGIYNQLVGGTLDEEQAKKMGIEEQALNNLIIKALMLNYAYDLGLRASKEEIIQ 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + F + +F ++ L + K++ + + L + + + P +
Sbjct: 118 AITSTESFQN-NGQFDEQIYKRILQENQLKPKDFEESIKENLILQKLDALLDMPLTPLEI 176
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
A + + I + +P+N + +++E+ K Y +
Sbjct: 177 ETLSAAYSMEDLVHIQIIDKKTIN----VNPTNEEVKRYWEENK----DIYQTERGYEIS 228
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
V IEI L++ YE K ++ E + + Q +K
Sbjct: 229 SVFIPLDSIEIQEASLESYYEDFKNQFLDSEGQVIPYEKAKEQVSEKYRDAQAQKEALKE 288
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV----IHGSFGYVIAHV 353
+A + ++ +L + V + + ++ P+ S +
Sbjct: 289 YIALRKNENPKAENLIIYEGNEDYGVEFINLLSQAKEQETLKPIKIAKDKKSGYITAKVI 348
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
I + + K ++ + LE F + + + +
Sbjct: 349 KIIPSEPKTYEAAQGNAKEDFVNSEKVRLLKEKATQALENFKGVDVGYVGYGETKTLKGL 408
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+++ K + ++ D K+ + + ++
Sbjct: 409 TKEESQEFAQELMSKGEEKGYILLENKAILYKIFDQRVKNSAIISQNLDFL 459
>gi|284040856|ref|YP_003390786.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
DSM 74]
gi|283820149|gb|ADB41987.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
DSM 74]
Length = 706
Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 68/637 (10%), Positives = 181/637 (28%), Gaps = 80/637 (12%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV------SGSSTVVSVGRQKVPFSS 55
+ IR+ S + + ++ V +++ + L V + Q + +
Sbjct: 4 INKIRERS-----GLAVGIIAVSLILFIVGGDLLGGRSLLFGGNQQEVGEIAGQSIDYQE 58
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
F + Q+ G + + ++ + L+ + + +GL+ +
Sbjct: 59 FNAKVDELRAQFEQQSGRAPVDQDLV--QIREQAWNQLLFEIAYQKEFDKLGLQVTSEEL 116
Query: 116 WGEIARS-------PLFHG-KDNKFSHDVFVSRLA-------REGINEKEYIDHYTKMLS 160
+ + F + F +S L ++ + +
Sbjct: 117 VDMVQGNNISPAVRQAFTNPQTGVFDKSSIISYLKGLKNLPAQQQAAWAGFEKNLASDRL 176
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEK 219
R G+ + + + + +V ++ + +++ L + K
Sbjct: 177 REKYEGLMRLSVFATTAEAQKEYQAQNSKANVKFLFVPYYTINDTTVKVTDSQLEDYLSK 236
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+KD Y + + I Y+ F V ++ ++++
Sbjct: 237 HKDEYPGSDSRSIQYVTFSVAPSKEDSSALYTQIKSL----------------------- 273
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
+ G Q S + L + +P+ + G
Sbjct: 274 ---------ARGLGAATNDSTFAQQNSDVRVPL-YLTAGEMPEQ--LRAAIPTFAPGGIY 321
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
Y I K + + I + A + + + + + G
Sbjct: 322 GPFREGNTYFIYKYGGTKRDTNFTARASHILIQTKGLADSAKADARRRAEGILKQIQGGA 381
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S + +++ D G+ V + +
Sbjct: 382 SFEALAQTNSDDGSRSVGGDLGYFKNNGQMV-------KPFETAVFGATSAGLIPRLVET 434
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ Y + + + ++ + + + T +E KA+Q + + +
Sbjct: 435 EFGYHIINVTQPKTNVLYRIAAIGKAITP---SQTTRDEALRKADQFASDVHTKEEFDAK 491
Query: 520 IGKNLGASLLTTNQI----NRMDNENKFFGYDGISQVFSGPVE-MVKCFPIENGLSYVVF 574
+ ++ + T ++I N+++ + F+ + P E G YV+
Sbjct: 492 VKEDKSLVVATADRIPEGANQINALTGSEVRQIVRWAFNDKTDINTVSEPFEVGDQYVIA 551
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLL-DSVIAYL 610
+TN + F + LT + +L + +I+ L
Sbjct: 552 VLTNKTSKDKVSINDFRNELTAKVRNELKGEQIISKL 588
>gi|78189176|ref|YP_379514.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium
chlorochromatii CaD3]
gi|78171375|gb|ABB28471.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Chlorobium
chlorochromatii CaD3]
Length = 697
Score = 109 bits (271), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/645 (10%), Positives = 175/645 (27%), Gaps = 74/645 (11%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
L +R + + + L + WG+ + V + + + N++
Sbjct: 4 LSSLRNKT-HIILYVLLASFLALIVFEWGMESNFI--KPQNVAGKVNGASISYQEYDNAY 60
Query: 61 KQELGMISQKIGF-VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
K + + + E L ++ ++LV L++ G+ V +
Sbjct: 61 KALSENVRRANPELELTPEM--EHELQERAWNSLVDQRLLEEQFRKFGITVQDREVLEAM 118
Query: 120 ARSPLFHGKDNKF--------SHDVFVSRLA--REGINEKEYIDHYTKMLSRTDVVGMFV 169
F S + + L ++ F
Sbjct: 119 NSPQPPMVIRQYFTDPATGKVDRQKLESARRDPANRDMWLQLEKYVRMELQENKLLRAFQ 178
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH--VPAIADPSNAVLTQWFEKYKDNYRAP 227
R ++ + + +I L ++ + ++++++K+ +
Sbjct: 179 TFERVTDREISDMINRKVSLFTASFIPLPLSAAGDDKRFPITDDDIKKYYDEHKEQF--- 235
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
++ S + V + ++ E E + + + V ++ +
Sbjct: 236 RQEKPSRKVETVFFPLVPSAKDSAAVRQELEALRADFSKSQNDVDFVKVQSDRSNSANVV 295
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ A SL+ SL +
Sbjct: 296 LTRADFSPLAGNAIFNTSSLAAGSL--------------------------IGPFADNGE 329
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ + V ++P+ + + EKV++ ++ + L G + ++++
Sbjct: 330 FRLLKVVRVQPAVQPIARASHILLRFNPANKAEIEKVQQLTMQIGQQLQAGVPFETLAKQ 389
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
G + V + P + + G ++
Sbjct: 390 YSADPGSAENGGDLGWFSPDRMVP-------EFSKAVFNSRPGAIIGPIQTQFGVHII-- 440
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ D++ V+ + ++ E +A ++ ++G F G
Sbjct: 441 ---KVTGFDQRALVASEVVRTIRSSSESMESQRRRAMAFQVDAKEKG--FAKSAATAGVK 495
Query: 528 LLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---- 582
+ +N+ R D ++ FS + IE+ + V ++T
Sbjct: 496 VEESNEFTRRMAIRPLGYNDKVATFAFSAKEGDI-SDVIESKKGFYVARLTAKHDEGYRS 554
Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
K++ L L L + V + +++
Sbjct: 555 LDKDAKERIKQELLVEKKGAALQQ---KLTAAAKVP--NATLEQI 594
>gi|295132519|ref|YP_003583195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zunongwangia
profunda SM-A87]
gi|294980534|gb|ADF50999.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase
[Zunongwangia profunda SM-A87]
Length = 702
Score = 109 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 73/622 (11%), Positives = 193/622 (31%), Gaps = 57/622 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L IR+ R+ + + + F++ + + +++ +V +++ F
Sbjct: 4 LNKIRQ--RSVFLILIIALALFSFVLADVIRSGGFSGKDNSIATVNGEEISREEFAR--- 58
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
++ Q + +++ +A ++ D ++ +++ +E +G+ A+ +V +
Sbjct: 59 -QVEAYQQNMRGNISTTQAV-----NRVWDQELNQIIVEEQVEKLGIRAEQAQVRQMMRA 112
Query: 121 ---RSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYIDHYTKMLSRTDVVGMFVG 170
++P F + F + +A + Y + + ++ M
Sbjct: 113 QMSQNPQFTNEAGMFDENRVKEYVASLKQTSPQMYQQWLSYEEGLAESAAQNIYANMIRT 172
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAPEY 229
G+ + QA + + Y+ + +P + S + + ++ + +K +
Sbjct: 173 GVGATLTEGKQAYQLQNNTMDLRYVQIPFSSIPDDEVEVSKSEIKEYVDNHKAKFETEAA 232
Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
+ I Y++F+ + E S + L A L + +
Sbjct: 233 RNIQYVIFNEEPSVEDKEESKNSLSAL------------------LEDRVEYNSVSKTND 274
Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
G +E S SD+ K +KG+ + +
Sbjct: 275 TIAGFNTTSDDQEFVNSNSDLQQPVTFKFKNQLPKEFADDLFNLEKGEVYGPYEENGYWK 334
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
++ + K + K + A ++ + + + +
Sbjct: 335 LSKLVETKE-----IPDSIKASHILLGFQGAQAGGTRTESAAKQLADSLAGVIKADKSKM 389
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
D + G P F F ++ V G ++ +
Sbjct: 390 AALATEFSDDPSAAQNSGDLGYFRPGMMVPTFDDFVLNNNEGTVGVVETDFGYHVIYIEE 449
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
++ + K+ V ++ T T ++ ++ + E + +F + K +
Sbjct: 450 QTDREKAVKIATVAREIDA---TEGTRNKLFNEVTKF--EIAAGEGDFTEEAKAADYRIR 504
Query: 530 TTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV----GP 583
T + +D G + F ++ E Y+V ++T K P
Sbjct: 505 TVRDVKALDENIPGVGQQRRVVQWAFEDDAKVGDVKRFETPTGYIVAQITAKKNKGLMSP 564
Query: 584 VQEKDKFISYLTQMMNKDLLDS 605
+ I LT+ +++
Sbjct: 565 EDASAEVIPILTKQKKAEIIKE 586
Score = 95.7 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 61/518 (11%), Positives = 136/518 (26%), Gaps = 31/518 (5%)
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+E + + KF + + E D S + ++
Sbjct: 209 VEVSKSEIKEYVDNHKA------KFETEAARNIQYVIFNEEPSVEDKEESKNSLSALLED 262
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
V S A + ++ P N + ++ + + +
Sbjct: 263 RVEYNSVSKTNDTIAGFNTTSDDQEFVNSNSDLQQPVTFKFKNQLPKEFADDLFNLEKGE 322
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
Y + K + + D ++A + + E
Sbjct: 323 VYGPYEENGYWKLSKLVETKEIPDSIKASHILLGFQGAQAGGTRTESAAKQLADSLAGVI 382
Query: 288 QSLKKGKKF--IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
++ K + +++ + + LG F + + D F L V+
Sbjct: 383 KADKSKMAALATEFSDDPSAAQNSGDLGYFRPGMMV-PTFDD--FVLNNNEGTVGVVETD 439
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
FGY + ++ + T+ + + T + +
Sbjct: 440 FGYHVIYIEEQTDREKAVKIATVAREIDATEGTRNKLFNEVTKFEIAAGEGDFTEEAKAA 499
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
D+ +D + + + + +++ F D + P G Y+
Sbjct: 500 DYRIRTVRDVKALD--------ENIPGVGQQRRVVQWAFEDDAKVGDVKRFETPTG-YIV 550
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
QI E+ +V K AE + K G + +N
Sbjct: 551 AQITAKKNKGLMSPEDASAEVIPILTKQKKAEIIKEKI---------SGTTVDQVAENQN 601
Query: 526 ASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ T N +N G + + V++ V + + YVV V+ S+
Sbjct: 602 KIVQTANAVNLSSPTLAGAGSEPEVVGAVYALGVGETSKPIVGDKGVYVVELVSKSEAPE 661
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ F T + LK++ +
Sbjct: 662 LDSYKPFAQQETSSRRQMANSRAFEALKAKAEIEDKRA 699
>gi|120437303|ref|YP_862989.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase [Gramella
forsetii KT0803]
gi|117579453|emb|CAL67922.1| PpiC-type secreted peptidyl-prolyl cis-trans isomerase [Gramella
forsetii KT0803]
Length = 706
Score = 109 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 74/624 (11%), Positives = 201/624 (32%), Gaps = 53/624 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR+ R+ I + + F++ + + + S S +T+ +V ++ F
Sbjct: 4 LNKIRQ--RSVFLIIIIALALFSFVLADVIRNGGMASQSSQNTIATVNGNEIGREEFARE 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG-- 117
+ + +G +++ +A +I + + L++ +E +G+ A +V
Sbjct: 62 VE----AFERNMGNNMSTTQAV-----NRIWEQKLRQVILEEEVEKLGIRAGEAQVTQLV 112
Query: 118 --EIARSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYIDHYTKMLSRTDVVGMF 168
++A +P F + F + +A + +++ + + M
Sbjct: 113 RTQMANNPNFTNEAGMFDENRLREYVANLKETSPQAYEQWQQFTSNLAETAKMNSYYNMV 172
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAP 227
G+ + + +QA R +N ++ ++ + + + + + + + + + +
Sbjct: 173 GAGVGATLIEGEQAYRLQNDNINMKFVQVPYSSVPDSEVEVTKSDIKSYLDNHSSRFETE 232
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ + Y++F+ + + L + + + A
Sbjct: 233 ASRSLQYVIFEESASGDDKTEAKETLNSLRNQ------------------RVEYNAAVGA 274
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G + SD+ + K +G+ +
Sbjct: 275 NDTLAGFDNTDDYATFVGNNSDLPFENRFKFRNDFSGNNAEAIFSLNEGETYGPYEENGY 334
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ ++ V + I + ++ V + + + +
Sbjct: 335 WKLSKVIQT---KNIPDSVKASHILVTYQGSQLGAGVSRSKEEAQVLADSIAGVVKGDNA 391
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ D + K+ G +P F + D+ V P G ++
Sbjct: 392 KFAELASEFSADGSNKEQGGDLGYFVPGTMIPAFDNYVFDNSTGDVGVVETPLGYHVISI 451
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
++ AR K+ + +++ + KT + ++ + E S +F DI K
Sbjct: 452 DDQTEAARAVKVATIAKEIQA---SEKTMNNLFNEVTKF--EISASEGDFGDIAKQGNYE 506
Query: 528 LLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ T + ++ G I F ++ E YVV ++T+ + +
Sbjct: 507 VRTVKDVKALEENIPGAGAQRRVIQWAFEDEAKVGDVRRFETNNGYVVAQLTSKRDKGLM 566
Query: 586 EKDKFISYLTQMMNKDLLDSVIAY 609
++ +T ++ K+ +I
Sbjct: 567 SVEEASGEVTPILRKEKKAKLIKD 590
Score = 99 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 61/520 (11%), Positives = 132/520 (25%), Gaps = 28/520 (5%)
Query: 109 EADHGRVWGEIARSPLFHGKDN-KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
V + + + +F + S D + +
Sbjct: 205 SVPDSEVEVTKSDIKSYLDNHSSRFETEASRSLQYVIFEESASGDDKTEAKETLNSLRNQ 264
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
V A ++ + ++ N E
Sbjct: 265 RVEYNAAVGANDTLAGFDNTDDYATFVGNNSDLPFENRFKFRNDFSGNNAEAIFSLNEGE 324
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
Y + K + + D ++A + + A
Sbjct: 325 TYGPYEENGYWKLSKVIQTKNIPDSVKASHILVTYQGSQLGAGVSRSKEEAQVLADSIAG 384
Query: 288 QSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
KF +LA E LG F + D+ GD V
Sbjct: 385 VVKGDNAKFAELASEFSADGSNKEQGGDLGYFVPGTMIPA--FDNYVFDNSTGDVGVVET 442
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
+VI+ + + V + K+I ++ + + E A +
Sbjct: 443 PLGYHVISIDDQTEAARAVKVATIAKEIQA----SEKTMNNLFNEVTKFEISASEGDFGD 498
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
I+++ + V +++ G + +++ F + + +G Y
Sbjct: 499 IAKQGNYEVRTVKDVKALEENIPGA-----GAQRRVIQWAFEDEAKVGDVRRFETNNG-Y 552
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ Q+ +EE +V + K A+ + + G + ++I N
Sbjct: 553 VVAQLTSKRDKGLMSVEEASGEVTPILRKEKKAKLIKDRLK---------GSSLQEIANN 603
Query: 524 LGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
G S+ + +N G + + VFS V YV V+ +
Sbjct: 604 QGVSVQNADAVNLSSPTLAGAGEEPEVVGAVFSLEPGKVSSPIAGEKGVYVAELVSKFEA 663
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ F + + LK + + +
Sbjct: 664 PTMDSYKGFAQQESAARRAQATMRIFDALKKKAEIEDNRA 703
>gi|157826283|ref|YP_001494003.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia akari str.
Hartford]
gi|157800241|gb|ABV75495.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia akari str.
Hartford]
Length = 524
Score = 109 bits (270), Expect = 2e-21, Method: Composition-based stats.
Identities = 83/518 (16%), Positives = 189/518 (36%), Gaps = 28/518 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ +
Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ IS++ G + E + +D +IL LV LD + L+ V +
Sbjct: 61 SLAINAISKQTGTSLTDEEIAQLNIDNQILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F + F F + I+E++Y+ ++ + + +VG F+ N + D
Sbjct: 121 ESPVFQNEQGAFDIKNFKAYFRNSYIDEEKYLLNFKEKALKNILVGSFIESFYVPNAMTD 180
Query: 181 QAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R + + N I P++ L +++ K + PE + SYI
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTDQQLKVFYQDNKTAFEVPEKRSFSYIKA 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR----------TVEQLVFPNQKEADEAF 287
++ + + ++ DEL Y +NK+++ +++ N + A +
Sbjct: 241 NIKDLKV--SVTQDELLEFYNENKDEFGDQSFELVQKQLHDLLKAQKIDILNMEFAKKLE 298
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA-KKGDFTPVIHGSF 346
G +++AE+ + +++ S+++ + + +G+ + I
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSEGELSYPIEAED 358
Query: 347 GYVIAHVS--NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+ V +I+P+ F +K+ + ++ + K + S E
Sbjct: 359 KSYLILVELKSIQPTKIPEFDTIKEQVNKVWIKQNIADVNLKIIK---DLAKEYNSDQEN 415
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ K I + + ++ + G + P + D Y
Sbjct: 416 IKELKATGIKISKKSYIRSKMENDLTLTPEILLSIFNTKIGSNTP-----IFQVGDEVYF 470
Query: 465 WVQIKESIPARDRKLEEVLTD--VKKDWKTVKTAEEVS 500
SI K V ++ + + K E ++
Sbjct: 471 AHIKSRSIDELTAKNIHVNSEKNIIYNIKNSVIDELIN 508
>gi|239948494|ref|ZP_04700247.1| peptidyl-prolyl cis-trans isomerase [Rickettsia endosymbiont of
Ixodes scapularis]
gi|239922770|gb|EER22794.1| peptidyl-prolyl cis-trans isomerase [Rickettsia endosymbiont of
Ixodes scapularis]
Length = 524
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 82/518 (15%), Positives = 195/518 (37%), Gaps = 28/518 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IRK + +++ ++ ++ F+ +G+ D L + + + F+ +
Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIITFSHVKNISQEDFLRAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ IS++ G + E + +D +IL LV LD + L+ V +
Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F + F +F + ++E++Y+ ++ + + VG F+ + D
Sbjct: 121 ESPVFKNEQGVFDIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180
Query: 181 QAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R + + N I P++ L +++ K ++ PE + SYI
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTDQQLKDFYQDNKTSFEVPEKRSFSYIKA 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR----------TVEQLVFPNQKEADEAF 287
++ + + ++ DEL Y +NK+++ + +++ N + A +
Sbjct: 241 NIKDLKV--SVTQDELLEFYNENKDEFGNQSFESVQKQLHDLLKAQKIDILNMEFAKKLE 298
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA-KKGDFTPVIHGSF 346
G +++AE+ + +++ S+++ + ++ +G+ + I
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYVSYAELIEDKIIAENADSIFELSEGELSYPIETED 358
Query: 347 GYVIAHVS--NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+ V +I+P+ F +K+ + ++ + K + S E
Sbjct: 359 KSYLILVELKSIQPAKIPEFDAIKEQVNKVWIKQNIADVNLKIIK---DLAKEYNSEQEN 415
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ K I + ++ +++ A + G + P + D Y
Sbjct: 416 IKELKANGIKISKKNYIRSEMENDLTLAPEILLSIFNTKIGSNTP-----VFQVGDEVYF 470
Query: 465 WVQIKESIPARDRKLEEVLTD--VKKDWKTVKTAEEVS 500
SI K V ++ + + K E ++
Sbjct: 471 AHIKSRSIDELTAKNIHVNSEKNIIYNIKNSVIDELIN 508
>gi|189501506|ref|YP_001957223.1| hypothetical protein Aasi_0039 [Candidatus Amoebophilus asiaticus
5a2]
gi|189496947|gb|ACE05494.1| hypothetical protein Aasi_0039 [Candidatus Amoebophilus asiaticus
5a2]
Length = 597
Score = 108 bits (269), Expect = 3e-21, Method: Composition-based stats.
Identities = 70/593 (11%), Positives = 165/593 (27%), Gaps = 46/593 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFL---IWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
+ IR+ +R + + + +LF F+ ++GL+ + + S + V ++V F +
Sbjct: 4 IGKIRERTRLLIVVVSIGLLF--FIARELFGLN--PLTSNNSPIIGKVAGKEVTLREFQD 59
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
G + + + L K+ L + D+ +D+G+ +
Sbjct: 60 RLDDLQHNFLMHYGQ--SPDEEENTTLRKQAWRQLTNEIIYDKVCKDLGITVGSDELVDM 117
Query: 119 IARSPLFHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ + + F + + + + + R +
Sbjct: 118 VQGTHIHPDLKAAFTNRETKEFNKKDLLAYLQSLAQVPANNQRHWHTLERILAASRCQDK 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ F N N + P
Sbjct: 178 FNQLMDQSVFVNSLEAQHQFNINNTTLDIQ---------------YLYVPYKSIKKESTS 222
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
K+ + E +Y + I + QKE + + ++
Sbjct: 223 ITDAMLKEYLAKHTADYQVEESKHIRYVTFPIVASKNDKLAFQKELQKLKEDFANTQEAS 282
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
A + + +++ +P + + KKG + Y V N+
Sbjct: 283 AFASIHTDTDPTLVYLQCTEKDLPAPLV--EHKNTLKKGMVVGPLAIGKDYKFYKVVNLV 340
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ ++ V + + EK+ + + + + +
Sbjct: 341 DATPKKYELVVIEKRLAPS-DETKEKIFRKADDFASQVTNKAQFETQVAKYSLQVQEAK- 398
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ + +L+ ++ L + Y+ + A
Sbjct: 399 -----VGKDDTDINKLTNARELVRWLYNSAKVGQVSSIFELTNN-YVIAMVASHTHAGTA 452
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG--ASLLTTNQIN 535
L+EV DVK+ + + ++ K + ++ K G A + T Q+
Sbjct: 453 SLDEVKKDVKQKAINEQRVKIITEKLQPI------ANLPLEELAKQYGGEAKIFTVPQVK 506
Query: 536 RMDNENKFFGYDG--ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
N + G ISQ FS + I + VV V + + +
Sbjct: 507 FSANTLQGIGSAPKTISQAFSLQPGQ-RSKIIADLSGIVVLDVIQHQTSKLPD 558
>gi|157964968|ref|YP_001499792.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia massiliae MTU5]
gi|157844744|gb|ABV85245.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia massiliae MTU5]
Length = 525
Score = 108 bits (268), Expect = 3e-21, Method: Composition-based stats.
Identities = 81/516 (15%), Positives = 184/516 (35%), Gaps = 24/516 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IRK + +++ ++ V++ F+ +G+ D L V + + F+ +
Sbjct: 2 MLDNIRKTADSFIMRVLFVMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 61
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ IS++ G + E + +D +IL LV LD + L+ V +
Sbjct: 62 SLEINAISKQTGTSLTDEEIAKLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 121
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F + F+ +F + ++E++Y+ ++ + + VG FV + D
Sbjct: 122 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFVESFYVPKAMTD 181
Query: 181 QAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R V + N I P++ L +++ K + PE + SYI
Sbjct: 182 NIVDYMAEKREVELVQIDLQNKPKDLQIPTPTDQQLKDFYQDNKTAFEVPEKRSFSYIKA 241
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR----------TVEQLVFPNQKEADEAF 287
++ + + ++ DEL Y +NK+++ +++ N + A +
Sbjct: 242 NIKDLKV--SVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 299
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA-KKGDFTPVIHGSF 346
G +++AE+ + ++ S+++ + ++ +G+ + I
Sbjct: 300 DETAAGSSLVEIAEKYKLPIQNVHYISYAELIEDKIIAENADSIFELSEGELSYPIETED 359
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ V + K + K +++ S E +
Sbjct: 360 KSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADVNL-KIIKDLAKEYNSDQENIK 418
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ I + + +++ + G + P + D Y
Sbjct: 419 ELQATGIKISKKSYIRSEMEDDLTLTPEILLSIFNTKIGSNTP-----VFQVGDEVYFAH 473
Query: 467 QIKESIPARDRKLEEVLTD--VKKDWKTVKTAEEVS 500
SI K V ++ + + K E ++
Sbjct: 474 IKSRSIDELTAKNIHVNSEKNIIYNIKNSVIDELIN 509
>gi|67459692|ref|YP_247316.1| parvulin-like peptidyl-prolyl isomerase [Rickettsia felis
URRWXCal2]
gi|67005225|gb|AAY62151.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia felis
URRWXCal2]
Length = 524
Score = 108 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 81/510 (15%), Positives = 180/510 (35%), Gaps = 12/510 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IRK + +++ ++ ++ F+ +G D L V + + F+ +
Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGFKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ IS++ G + E + +D +IL LV LD + L+ V +
Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVGYYDLDLSDDTVKILVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F + F +F + ++E++Y+ ++ + + VG FV + D
Sbjct: 121 ESPVFKNEQGIFDIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGSFVESFYVPKAMTD 180
Query: 181 QAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R V + N I+ P++ L +++ K + PE + SYI
Sbjct: 181 NIVDYMAEKREVELVQIDLQNKPKDLQISTPTDQQLKVFYQDNKTVFEVPEKRSFSYIKA 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ + + I+ DEL Y +NK+++ V++ + K +++ KK
Sbjct: 241 NIKDLKV--SITQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + + +S A+ I + + S G + +
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAENVDSIFELSEGELSYPIEAED 358
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
S+ + + A E+V + + + + ++++ ++
Sbjct: 359 KSYLILVELKSIQPAKIPEFDAIKEQVNKVWIKQNIADVNLKIIKDLAKEYNSDQENIKE 418
Query: 418 VDFAGKDVKGKEVAAIPYKEQ-----LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ AG + K + + S + D Y SI
Sbjct: 419 LKAAGIKISKKSYIRAEMENDLTLTPEILLSIFNTKIGSNTPIFQVGDEVYFAYIKSRSI 478
Query: 473 PARDRKLEEVLTD--VKKDWKTVKTAEEVS 500
K + ++ + + K E ++
Sbjct: 479 DELTAKNIHINSEKNIIYNIKNSVIDELIN 508
>gi|91218479|ref|ZP_01255419.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Psychroflexus
torquis ATCC 700755]
gi|91183360|gb|EAS69763.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Psychroflexus
torquis ATCC 700755]
Length = 704
Score = 108 bits (267), Expect = 5e-21, Method: Composition-based stats.
Identities = 79/655 (12%), Positives = 196/655 (29%), Gaps = 76/655 (11%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR+ RT + + + F++ L + S +S+V +G +++ F
Sbjct: 4 LSKIRE--RTVFLIVIIALALFAFVLTDLFKNGGFSSDKATSSVGVIGDEEIGREEFAAE 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ + + ++ + +N + L Q E +GLE ++ +
Sbjct: 62 VENIVQQSQGR---------VSTLQAANQAWENNLRRTLLKQEFESLGLEVGADQITDAM 112
Query: 120 AR----SPLFHGKDNKFSHDVFVSRLA-------REGINEKEYIDHYTKMLSRTDVVGMF 168
++ P F F +A ++ + M
Sbjct: 113 SQQLVGDPRFSNDAGFFDEAKLKQFIAELKITSPQQYQQWVNFEQSMEVNAKSQLYFNMV 172
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
G++ + L Q +N + +++ + + + + + + +K+ ++
Sbjct: 173 KAGVQTTLLEGKQIYHQENDNLTFEFVKVP-FDKGEEVEVTKSDIQNYINVHKERFQQDA 231
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ + Y+ F+ E+ DE+ K + +
Sbjct: 232 KRNLEYVYFEETPSEEDNSFVLDEVTKLTTDEKVEQSEG------------LSNFNTTDN 279
Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI-PDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ + + G F+ + DV+ + + + ++ +
Sbjct: 280 VQEFIAVHSETPYNDNYTFEYNMKGEFALAILELDVNDVYGPYYENESYKISKLVERTQK 339
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
S+ V++ + D + +A + + D+ +
Sbjct: 340 ADSVKTSH----ILVTYNGSRVDASVTRTKEEAKVLADSLTD------VVRRNSDKFAEL 389
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
S D + G+ A +P +F + ++ V G ++
Sbjct: 390 AGEFSSDRQSAENGGQLNWITYGALVPEFNDYVF----DEAKVNSYGLVETDFGFHVIYL 445
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ K+ V V+ + KT E+ +++ E S + +FR + G +
Sbjct: 446 EDRTSLKDALKVATVTKRVEP---SEKTLNELYRSSSKF--ELSAKDNDFRKEADSTGLT 500
Query: 528 LLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--- 582
+ N IN++D G + F G + + G Y+V +VT
Sbjct: 501 VKPVNGINKLDESIPGVGRQRSIVKWAFEGETKTGDIKSFDTGSGYIVARVTKISKKGLQ 560
Query: 583 --------------PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
++ ++ S + + + SV + + I
Sbjct: 561 STEEASAIVTPILRKQKQAEQIKSQIEGQDLNAVASLFGVNKQKASSVNISNPFI 615
>gi|257458734|ref|ZP_05623857.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
gi|257443722|gb|EEV18842.1| conserved hypothetical protein [Campylobacter gracilis RM3268]
Length = 485
Score = 108 bits (267), Expect = 5e-21, Method: Composition-based stats.
Identities = 72/482 (14%), Positives = 174/482 (36%), Gaps = 21/482 (4%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++K ++ + I++ + F+ WG D + +GS + VG+ +
Sbjct: 1 MIEWMQKHKKSLIPTIWISTIAFVGAGFVGWGAYDMNANRAGS--IARVGQISITNQELN 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + +S E+A+++ LD+ +D L+ A F +D+G++A V
Sbjct: 59 TKYSELYNRLSAMSDGQFTQEQAKNMHLDQIAVDQLIGEAYFLNFAKDLGIQASDKDVAE 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ SP F ++ FS +++ + + G+ +KE+ + K+L+ + P +
Sbjct: 119 FVVSSPNFQ-ENGAFSKELYDNVVRNSGLTKKEFERNLQKVLTLEKLGKALKITPSPKIV 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
A + + S + I + S+ L +++E K ++ + +
Sbjct: 178 EAFAASQLMQDKVSAEIIYADAN-----VTFSDDELKKFWEGEKSHFMTEKKYTLGAYFV 232
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + ++ EL Y++++ +Y S + + ++ D +KK
Sbjct: 233 APSKAD----VNETELSKFYKEHRGEYRSLDDKLLDFAEAKPDVLKDYRMDQVKKD---- 284
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
A + + L + + S +AK GD GY+IA ++ ++
Sbjct: 285 --ATKDYLEIKKGKLDTNETIVATASNFPISEIEVAKPGDVIKPFEYKGGYLIAKLNGVE 342
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+SF+E K + + K E +++ + + + +
Sbjct: 343 QPRQMSFEEAKSLASKEFETKKRKELLEKRAQDALKNFKGEDFGMLSLNSKNNTKLSDDE 402
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
D+ K V+ + + + + +I + + +
Sbjct: 403 FYKFLIDMFNKPAKEGIVMFDNKAVVYKISQQSLGNSEEIDKEKAIVADRITALLNSNLQ 462
Query: 478 KL 479
Sbjct: 463 DD 464
Score = 42.2 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 20/300 (6%)
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
++ AD+ + + ++ + F + + +
Sbjct: 193 EIIYADANVTFSDDELKKFWEGEKSHFMTEKKYTLGAYFVAPSKADVNETELSKFYKEHR 252
Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
+ + +L +F + + R +++ K +
Sbjct: 253 GEYRSLDDKLLDFAEAKPDVLKDYRMDQVKKDATKDYLEIKKGKLDTNETIVATASNFPI 312
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
P G Y+ ++ R EE + K+++T K E +
Sbjct: 313 SEIEVAKPGDVIKPFEY-KGGYLIAKLNGVEQPRQMSFEEAKSLASKEFETKKRKELLEK 371
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
+A + + E + L + +F+ P +
Sbjct: 372 RAQDALKNFKGEDFGMLSLNSKNNTKLSDDEFYK------------FLIDMFNKPAKEGI 419
Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
VV+K++ +G +E DK +T ++N +L D + L+ +Y
Sbjct: 420 VMF---DNKAVVYKISQQSLGNSEEIDKEKAIVADRITALLNSNLQDDLTKMLEKRYKTE 476
>gi|15893195|ref|NP_360909.1| hypothetical protein RC1272 [Rickettsia conorii str. Malish 7]
gi|15620408|gb|AAL03810.1| unknown [Rickettsia conorii str. Malish 7]
Length = 524
Score = 107 bits (266), Expect = 5e-21, Method: Composition-based stats.
Identities = 78/510 (15%), Positives = 178/510 (34%), Gaps = 12/510 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ +
Sbjct: 1 MLDNIRKTTDSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ IS++ G + E + +D +IL LV LD + L+ V +
Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F + F+ +F + ++E++Y+ ++ + + VG F+ + D
Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180
Query: 181 QAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R + + N I P+ L +++ K + PE + SYI
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ + + ++ DEL Y +NK+++ V++ + K +++ KK
Sbjct: 241 NIKDLKV--SVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + + +S A+ I + S G + +
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSEGELSYPIETED 358
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
S+ + + A E+V + + + + ++++ ++
Sbjct: 359 KSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADVNLKIIKDLAKEYNSDQKNIKE 418
Query: 418 VDFAGKDVKGKEVAAIPYKEQ-----LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ G + K + + S + D Y SI
Sbjct: 419 LKATGIKISNKSYIRSEMENDLTLTPEILLSIFNTTIGSNTPVFQVGDEVYFAHIKSSSI 478
Query: 473 PARDRKLEEVLTD--VKKDWKTVKTAEEVS 500
K V ++ + + K E ++
Sbjct: 479 DELTAKNIHVNSEKNIIYNIKNSVIDELIN 508
>gi|15604653|ref|NP_221171.1| hypothetical protein RP822 [Rickettsia prowazekii str. Madrid E]
gi|3861348|emb|CAA15247.1| unknown [Rickettsia prowazekii]
gi|292572472|gb|ADE30387.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia prowazekii
Rp22]
Length = 528
Score = 107 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 81/514 (15%), Positives = 185/514 (35%), Gaps = 16/514 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IRK S +++ ++ ++ F+ +G+ D L S V+ + + F+ +
Sbjct: 1 MLDNIRKTSDSFIMRVLFAIIAFAFVGFGIKDILNVRRNSDIVIFSHAKNISKQDFLQAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ IS+++G + E + +D +IL L+ LD + L+ V +
Sbjct: 61 SLEINAISKQMGKSLIDEEITQLNIDNRILKRLIYNNILDYLVSYYDLDLGDDTVKILVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F + F ++F + I E++Y+ ++ + + + +V F + D
Sbjct: 121 ESPMFKNEQGVFDIEIFKTYFKNAYIGEEKYLLNFKEKVLKNLIVSTFAKSFYVPKAMTD 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R V+ I L+ ++ P I P++ L +++ K + PE + SYI
Sbjct: 181 NIVDYMAEKREVELIQLDLQNKPKDLQIHTPTDQQLKDFYQDNKAAFEVPEKRSFSYIKA 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ----LVFPNQKEADEAFQSLKKG 293
++ + + I ++ DEL Y +NK+++ V+ L+ + + + K
Sbjct: 241 NIKDFK--ISVTQDELLEFYNENKDEFGDQSFEAVQTQLHDLLRAKKIDILNMELAKKLE 298
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+ A S + D+I + + S G + +
Sbjct: 299 DEIASGASLVEISEKYKLPIQNVNYVSYAELIGDNIMADNIAESADSIFELSEGELSYPI 358
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
S+ + + A + ++V + + + + ++++
Sbjct: 359 EAEDKSYLILVELKSIQPAQIPKFNAIKDQVNKVWIKRNIEDVNFKMIKDLAKEYNADPE 418
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQ-----LLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ + G + K + + + S + D Y
Sbjct: 419 QIKDFNAVGIKISKKNYIRMEIENDLTLTPEILLSIFNTKIGSNTPVFRVGDIVYFAHIK 478
Query: 469 KESIPARDRKLEEV--LTDVKKDWKTVKTAEEVS 500
SI + V ++ + K E ++
Sbjct: 479 SRSIDELTAQNIHVNLEKNIIYNIKNSVIEELIN 512
>gi|309378619|emb|CBX22797.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 512
Score = 107 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 79/482 (16%), Positives = 165/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S +
Sbjct: 1 MFHSIEKYKTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVRVGDEKISEQSLNAAV 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDAGGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ YE+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAYEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL + + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLDEAAKNSGLKVETQETWLSRQDAQMSGLPENVINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + +++ K++ + + A K + A ++
Sbjct: 343 VLSINNEIAWVVRAKEVREEKTLPFAEAKDAVRQAYVRAEAAKLAENKAKEVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 52.2 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 56/202 (27%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKNAYEERVARLP 247
Query: 473 PARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN G + T
Sbjct: 248 ANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPSSLDEAAKNSGLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ VFS + N V + +
Sbjct: 308 ETWLSRQDAQMSGLPENVINAVFSDDVLKKKHNSEVLSINNEIAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYVRAEAAKLAEN 389
>gi|261401210|ref|ZP_05987335.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
ATCC 23970]
gi|269208789|gb|EEZ75244.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
ATCC 23970]
Length = 512
Score = 107 bits (265), Expect = 6e-21, Method: Composition-based stats.
Identities = 80/487 (16%), Positives = 165/487 (33%), Gaps = 25/487 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S +
Sbjct: 1 MFHSIEKYKTP--AQVLLGLIALTFVGFGVS--TASRPGADYIVQVGDEKISEQSLNAAV 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDAGGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ YE+ + P + V K K +K
Sbjct: 223 DFADKQAVSETEVKNAYEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL + + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLDEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAVTP 462
Query: 474 ARDRKLE 480
D
Sbjct: 463 PDDATAR 469
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQAVSETEVKNAYEERVARLP 247
Query: 473 PARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN G + T
Sbjct: 248 ANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPSSLDEAAKNSGLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ VFS + N + V + +
Sbjct: 308 ETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTINSETAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRTEAAKLAEN 389
>gi|330975097|gb|EGH75163.1| periplasmic folding chaperone [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 393
Score = 107 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 56/349 (16%), Positives = 126/349 (36%), Gaps = 26/349 (7%)
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
+ +E Q L KG+ F LA+E + LG K + D + +++++L K
Sbjct: 56 KIEEIQQRLAKGEDFAALAKEYSQDPGSSNKGGDLGYAGKG-VYDPAFEEALYALNKDQ- 113
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
+ + FG+ + + ++ +F +K + N ++ +K E K+LE+
Sbjct: 114 VSQPVRTDFGWHLIKLLGVEAPSVPTFASLKGKLTNDLKSQLVEQKFVEVTKQLEDSAFE 173
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ + + ++ + G + A I + + +T+
Sbjct: 174 SSDLSQPAQDLGLKVQTTAPFGREGGEGLTANRAVI-----QAAFSPEVLEEGANSNTLE 228
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN-QLVLEYSKEGKN 516
L + + V+ KE + + LE V + ++ + ++KA + +L ++GK
Sbjct: 229 LDPETVVVVRSKEHLQPQQLPLESVASSIRAQLVKEHAS--AAAKAKGEALLAGLRDGK- 285
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP-----IENGLSY 571
K G + R + + +F P K P + S+
Sbjct: 286 IPLAAKQEGRDWKMMEAVTRSQ---EGVDPQVLQTLFRMPKPTGKDKPEFASITASDGSF 342
Query: 572 VVFKVTNSK---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V+ ++ EK ++ +L + + A L+S+ +
Sbjct: 343 VIVRLNGVNQAAAPTDAEKAQYRRFLASREGQQDFAAYRAQLESKAKIE 391
>gi|327392985|dbj|BAK10407.1| peptidyl-prolyl cis-trans isomerase D PpiD [Pantoea ananatis
AJ13355]
Length = 309
Score = 107 bits (265), Expect = 7e-21, Method: Composition-based stats.
Identities = 49/314 (15%), Positives = 121/314 (38%), Gaps = 22/314 (7%)
Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
+G PD L +KG + VI S G++IA + +I P +V+ ++
Sbjct: 1 MGWLEPSTTPDEL---KNAGLKEKGQLSGVIKSSVGFLIARLDDIIPEQVKPLADVRSEV 57
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
A++++ KA + + +++ E + + ++ E+ + + +D K++
Sbjct: 58 ADEVKQEKAVDAFYKLQQKVSEAASN--DNESLAGAEQASGMKATETGWFSRDDVPKDLD 115
Query: 432 AIPYKEQLLFR--VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
K+ + V P + +++ ++I E P LE+V +
Sbjct: 116 FDAVKQAIFNGGLVGQNGAPGNNSDIISVDGDRAFVLRISEHKPEAVEPLEKVKAQIIDT 175
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
K K ++ ++A++L+ + + D+ K G +L + ++R +
Sbjct: 176 LKHDKATQQAKAQADKLLADLKAGKQ---DVLKAAGLTLSASKTVDRNTQD------PVA 226
Query: 550 SQVFSGPVEM----VKCFPIENGLSYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLL 603
F+ P + + V+ V G P + ++ + +TQ +
Sbjct: 227 QAAFNLPQPEDNKPSWGVSEDMQGNVVLVAVDKVSTGTMPQAQINEMVKGVTQNNAQLAF 286
Query: 604 DSVIAYLKSQYSVT 617
++++ L+ + +
Sbjct: 287 EALLQNLRKEAKIK 300
>gi|34581133|ref|ZP_00142613.1| hypothetical protein [Rickettsia sibirica 246]
gi|28262518|gb|EAA26022.1| unknown [Rickettsia sibirica 246]
Length = 524
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 78/510 (15%), Positives = 180/510 (35%), Gaps = 12/510 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ +
Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ +IS++ G + E + +D +IL LV LD + L+ V +
Sbjct: 61 SLEINVISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F + F+ +F + ++E++Y+ ++ + + VG F+ ++D
Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIKSFYVPKAMID 180
Query: 181 QAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R + + N I P+ L +++ K + PE + SYI
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ + + ++ DEL Y +NK+++ V++ + K +++ KK
Sbjct: 241 NIKDLKV--SVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ + + +S A+ I + S G + +
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSEGELSYPIETED 358
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
S+ + + A E+V + + + + ++++ ++
Sbjct: 359 KSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKWNIADVNLKIIKDLAKEYNSDQENIKE 418
Query: 418 VDFAGKDVKGKEVAAIPYKEQ-----LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ G + K + + S + D Y SI
Sbjct: 419 LKATGIKISKKSYIRSEMENDLTLTPEILLSIFNTTIGSNTPVFQVGDEVYFAHIKSSSI 478
Query: 473 PARDRKLEEVLTD--VKKDWKTVKTAEEVS 500
K V ++ + + K E ++
Sbjct: 479 DELTAKNIHVNSEKNIIYNIKNSVIDELIN 508
>gi|88801328|ref|ZP_01116856.1| peptidylprolyl cis-trans isomerase [Polaribacter irgensii 23-P]
gi|88781986|gb|EAR13163.1| peptidylprolyl cis-trans isomerase [Polaribacter irgensii 23-P]
Length = 707
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 87/618 (14%), Positives = 190/618 (30%), Gaps = 42/618 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
L IR+ R+ I + + F++ FS S + V V + + F +
Sbjct: 4 LSKIRE--RSMFLIIIIGLALFAFVLDPSTLGDFFSSSKVNEVGQVNGEAISRQEFAEAV 61
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI- 119
Q + + + DN++ +ED G+ VW EI
Sbjct: 62 DQYKQN---------SRSEVSEMQAANAVWDNILRKKIYKNQLEDAGISVGEQDVWSEIL 112
Query: 120 -----ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR-TDVVGMFVGGMR 173
+P F + F F LA N + ++ + + +
Sbjct: 113 KVPSVQDNPQFQNEAGLFDELKFKQFLADTKENNQSLWSAWSNYMGQIKENTETNTYNSL 172
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
+ L K E + + + + A ++++++ + +A E + +
Sbjct: 173 VTAGLGASLKEGEMEYVIENTKLSGDFVYVSYASIADSLVSIKRSEVAAYIKANENEFKA 232
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
D+ + I+ + ++ +A +K R E +V D+ F
Sbjct: 233 VSTRDISYVKFDIKATAEDEEAIKQKVGSLIGDASDRNNEVIVGFKNATDDKVFLVDNGS 292
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+ + S+S +GD + I+ +
Sbjct: 293 DLNLDEDYKFNASISQAVANDIFSG---------------NEGDVFGPYKDQGYFKISKI 337
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ + + + + +V + EE + + S +
Sbjct: 338 RAVTKMPDSV--RASHILIPFLGSQRGTAEVSRTKAQAEELADSILRVVKRSDSKFASLA 395
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D G + FR + + V P G Y ++I ++
Sbjct: 396 KSLSSDTGSAAKGGDLDWFNYARMTPAFRDYAFTNSKGAVGVVETPFG-YHVIRIDDTK- 453
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+K+ ++ T K + T + KA Q L SK ++ + K +L
Sbjct: 454 -NTQKVLKLSTYASKIIPSEATENDFFQKAEQFALAVSK-TTDYTALAKENNYNLRAAVG 511
Query: 534 INRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
+ +D G + +S F G ++ + SYVV VT+ + +K +
Sbjct: 512 LEVLDENVPGLGNERQIVSWAFKGDSKIGSFNRFDLTGSYVVAVVTSKTEKGLMSVEKAL 571
Query: 592 SYLTQMMNKDLLDSVIAY 609
+ + ++ + ++I+
Sbjct: 572 NTVRPILLNEKKAALISA 589
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 39/337 (11%), Positives = 96/337 (28%), Gaps = 23/337 (6%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
K L+ + G + L F+ + + D F+ +K V+ F
Sbjct: 386 RSDSKFASLAKSLSSDTGSAAKGGDLDWFNYARMT-PAFRDYAFTNSKGAV--GVVETPF 442
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
GY + + + T ++ + + + ++ ++ T +++
Sbjct: 443 GYHVIRIDDT--KNTQKVLKLSTYASKIIPSEATENDFFQKAEQFALAVSKTTDYTALAK 500
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
G +V + V + + Q++ F D + + L GSY+
Sbjct: 501 ENNYNLRA-----AVGLEVLDENVPGLGNERQIVSWAFKGDSKIGSFNRFDLT-GSYVVA 554
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+ +E+ L V+ K A +S+ + +G + I
Sbjct: 555 VVTSKTEKGLMSVEKALNTVRPILLNEKKAALISA---------NLKGSSLAAIAAANNT 605
Query: 527 SLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
++ +N G + ++ + V + N + +
Sbjct: 606 TVRNAKDVNLKTASLVGVGVEPKIVGAMYGAELNKVYNAIVGNRGVFSFALNKKEAPTAL 665
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ ++ +KS V +
Sbjct: 666 PNYEVNRKRISASRKAMTFKIY-EAIKSASEVEDNRA 701
>gi|237750031|ref|ZP_04580511.1| WbnF [Helicobacter bilis ATCC 43879]
gi|229374442|gb|EEO24833.1| WbnF [Helicobacter bilis ATCC 43879]
Length = 543
Score = 106 bits (264), Expect = 9e-21, Method: Composition-based stats.
Identities = 71/524 (13%), Positives = 180/524 (34%), Gaps = 28/524 (5%)
Query: 1 MLEIIRKASRTWVAKI---FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
MLE ++K + V + L ++F + WG FS S +V VG + +
Sbjct: 1 MLEWMQKHKKYLVITVWVSALALVFASMVEWGGGG--FSAVSSDSVAKVGDIYISRQEYQ 58
Query: 58 NSWKQELGMISQKIGFVVNSERAR-SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ + +++ + V + + ++++ LV L+ +DIG+ +
Sbjct: 59 RKYNEIYDNVAEYMRQVGLPDDGKPMPEIEQEAFRILVQEKLLEMLAKDIGVSITSNEIL 118
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+ +P F + F+ + + L N +Y K L + + + +
Sbjct: 119 EALLNTPEFQDATHTFNKEQYEKLLQANRWNTADYEAFVAKALLQEKMQNFPLAPVSTLE 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + + + ++ A+ +++ + ++E+ K+ Y P +I+Y+
Sbjct: 179 TNAFMSAGKIKDVAELRLLHKDSVLKNAVLQTADSEIRSYWERNKEKYYKPASYKIAYMA 238
Query: 237 FDV-------------------HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
D+ K E + +E++A+Y K + S + T+ + +
Sbjct: 239 LDMGEINTNRAMLEKFYKDNERKYKNLTFEQALEEVEADYRKAVLGFASSYMATISKNIA 298
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
N K+ ++ + +A Q D+ + + + IP SL +
Sbjct: 299 ENNKDLQIKTSNVITTMESQSIALLQKHFDGDLDIKDIALQDIPLYSLQLNDDGSDHSAL 358
Query: 338 FTPVIHGSFGYVI-AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
T V G + + ++ + K+ ++ ++ AS + + + E
Sbjct: 359 ITAVSSGKGLLAPLEYSKDHWIIPYITEKIPKQALSFELAKELASRDLMAEKQNDEFKKM 418
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI--PYKEQLLFRVFGKDDPLSKDH 454
T + +I + L L + ++++ + + + K+
Sbjct: 419 AYTKLSQIGEENLGNVVPLHLSLWQEQNMQSHKQLLSLGLNDMDIRQALDYIMRHNKKEG 478
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
V L + ++ + L + + + K +
Sbjct: 479 VVFLGSDKALLFRVVKQEMPNYADLVNITNAEDEALQEAKVRDL 522
>gi|152992212|ref|YP_001357933.1| hypothetical protein SUN_0617 [Sulfurovum sp. NBC37-1]
gi|151424073|dbj|BAF71576.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 491
Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/396 (14%), Positives = 148/396 (37%), Gaps = 16/396 (4%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ ++K ++ V I+ + + F+ WG S + V VG ++ +
Sbjct: 1 MISWMQKHNKYLVWTIWVATIAFIGAGFVGWGTYSF---GSKAGNVAKVGNIEIKQTQLN 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++ ++ + ++ ++A+ +GL ++ + A L F +++G+ V
Sbjct: 58 MAYSNLYNQYNEMMQGKLDEKKAKEMGLIQQAFSRIEVQAKLLNFAQEMGIVVSDKEVAR 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+A F KD F+ D++ + L + + K + ++ + + P +
Sbjct: 118 TLAGIKGFQ-KDGVFNKDIYNAYLRSQRLKAKTFEATLKDEITIQKTLALLHTDALPLEV 176
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ N + + ++ A + ++E K+N+ P ++S +
Sbjct: 177 ETVSS----AMNIADKLMYKVLKNDDVNISMDEAKIKAFWEIQKENFMTPRMYKLSIVWT 232
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
E ++++E++A Y++N Y + + + D + KK +
Sbjct: 233 ATDGVE----VTDEEIKAFYDENSFNYTDAAGKQLLFDEAKEEVTKDLKIKKSKKAAQKQ 288
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+A ++GK + S+ + L D++ G+ Y + +
Sbjct: 289 YIAFKKGKLENPESMTLPVNDSTLSKELWDAV-IEKNSGEIVKPKVVGDKYATVKIEAVI 347
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
+F++ K+++ + E + + ++ E
Sbjct: 348 EPKAKTFEDAKEEVTKLYTLQAQKEALLKLAEKTLE 383
>gi|238650847|ref|YP_002916702.1| peptidyl-prolyl cis-trans isomerase [Rickettsia peacockii str.
Rustic]
gi|238624945|gb|ACR47651.1| peptidyl-prolyl cis-trans isomerase [Rickettsia peacockii str.
Rustic]
Length = 524
Score = 106 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 78/516 (15%), Positives = 182/516 (35%), Gaps = 24/516 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ +
Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ IS++ G + E + +D +IL LV LD + L+ V +
Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F + F+ +F + ++E++Y+ ++ + + VG F+ + D
Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180
Query: 181 QAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R + + N I P+ L +++ K + PE + SYI
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR----------TVEQLVFPNQKEADEAF 287
++ + + ++ DEL Y +NK+++ +++ N + A +
Sbjct: 241 NIKDLKV--SVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA-KKGDFTPVIHGSF 346
G +++AE+ + +++ S+++ + + +G+ + I
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSEGELSYPIETED 358
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ V + K + K +++ S E +
Sbjct: 359 KSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADVNL-KIIKDLAKEYNSDQENIK 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
K I + + +++ + G + P + + Y
Sbjct: 418 ELKATGIKISKKSYIRSEMENDLTLTPEILLSIFNTTIGSNTP-----VFQVGNEVYFAH 472
Query: 467 QIKESIPARDRKLEEVLTD--VKKDWKTVKTAEEVS 500
SI K V ++ + + K E ++
Sbjct: 473 IKSSSIDELTAKNIHVNSEKNIIYNIKNSVIDELIN 508
>gi|229587184|ref|YP_002845685.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia africae ESF-5]
gi|228022234|gb|ACP53942.1| Parvulin-like peptidyl-prolyl isomerase [Rickettsia africae ESF-5]
Length = 524
Score = 106 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 79/516 (15%), Positives = 183/516 (35%), Gaps = 24/516 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IRK + +++ ++ ++ F+ +G+ D L V + + F+ +
Sbjct: 1 MLDNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFVRAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ +IS++ G + E + +D +IL LV LD + L+ V +
Sbjct: 61 SLEINVISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVNYYDLDLSDDTVKILVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F + F+ +F + ++E++Y+ ++ + + VG F+ + D
Sbjct: 121 ESPVFKNEQGVFNIKIFKNYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180
Query: 181 QAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R + + N I P+ L +++ K + PE + SYI
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR----------TVEQLVFPNQKEADEAF 287
++ + + ++ DEL Y +NK+++ +++ N + A +
Sbjct: 241 NIKDLKV--SVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA-KKGDFTPVIHGSF 346
G +++AE+ + +++ S+++ + + +G+ + I
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADSIFELSEGELSYPIETED 358
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ V + K + K +++ S E +
Sbjct: 359 KSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADVNL-KIIKDLAKEYNSDQENIK 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
K I + + +++ + G + P + D Y
Sbjct: 418 ELKATGIKISKKSYIRSEMENDLTLTPEILLSIFNTTIGSNTP-----VFQVGDEVYFAH 472
Query: 467 QIKESIPARDRKLEEVLTD--VKKDWKTVKTAEEVS 500
SI K V ++ + + K E ++
Sbjct: 473 IKSSSIDELTAKNIHVNSEKNIIYNIKNSVIDELIN 508
>gi|325144618|gb|EGC66917.1| hypothetical protein NMBM01240013_1034 [Neisseria meningitidis
M01-240013]
gi|325205986|gb|ADZ01439.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
Length = 512
Score = 106 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 78/482 (16%), Positives = 166/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S +
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISEQSLNAAV 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL++ + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLPAPVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKNAFEERVARLP 247
Query: 473 PARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN G + T
Sbjct: 248 ANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPSSLAEAAKNSGLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ VFS + N + V + +
Sbjct: 308 ETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTINSETAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRTEAAKLAEN 389
>gi|313668353|ref|YP_004048637.1| peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ST-640]
gi|313005815|emb|CBN87269.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
020-06]
Length = 512
Score = 106 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 73/482 (15%), Positives = 165/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S +
Sbjct: 1 MFHSIEKYKTP--AQVLLGLIALTFVGFGVSTV--SRPGADYIVRVGDEKISEQSLNAAI 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDAGGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ K +S E++ +E+ + + + EQ + E K +L
Sbjct: 223 DFADKQAVSETEVKNAFEERVARLPANEAKPSFEQEKASVENELKMKKAVADFNKAKEKL 282
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVS-----LADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
++ S ++ + + + D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKNLPFAEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQAVSETEVKNAFEERVARLP 247
Query: 473 PARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN G + T
Sbjct: 248 ANEAKPSFEQEKASVENELKMKKAVADFNKAKEKLGDDAFNHPSSLAEAAKNSGLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ VFS + N + V + +
Sbjct: 308 ETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTINSETAWVVRAKEVREEKNLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRTEAAKLAEN 389
>gi|157829104|ref|YP_001495346.1| hypothetical protein A1G_06985 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933829|ref|YP_001650618.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str.
Iowa]
gi|157801585|gb|ABV76838.1| hypothetical protein A1G_06985 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908916|gb|ABY73212.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str.
Iowa]
Length = 524
Score = 106 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 79/516 (15%), Positives = 181/516 (35%), Gaps = 24/516 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML IRK + +++ ++ ++ F+ +G+ D L V + + F+ +
Sbjct: 1 MLNNIRKTADSFIMRVLFAMIAFAFVGFGIKDVLNGRRSGDIVTFSHVKNISQEDFLRAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ IS++ G + E + +D +IL LV LD + L+ V +
Sbjct: 61 SLEINAISKQTGTSLTDEEIAQLNIDNRILKRLVYDNVLDYLVSYYDLDLSDDTVKILVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F + F+ +F + ++E++Y+ ++ + + VG F+ + D
Sbjct: 121 ESPVFKNEQGVFNIKIFKTYFRNSYMDEEKYLLNFKEKALKNIFVGTFIESFYVPKAMTD 180
Query: 181 QAKRFYFENRS---VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R + + N I P+ L +++ K + PE + SYI
Sbjct: 181 NIVDYMAEKREVELIQIDLQNKPKDLQIPTPTGQQLKDFYQDNKTAFEVPEKRSFSYIKA 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR----------TVEQLVFPNQKEADEAF 287
++ + + ++ DEL Y +NK+++ +++ N + A +
Sbjct: 241 NIKDLKV--SVTQDELLEFYNENKDEFGDQSFEAVQKQLHDLLKAQKIDILNMEFAKKLE 298
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA-KKGDFTPVIHGSF 346
G +++AE+ + +++ S+++ + + +G+ + I
Sbjct: 299 DETAAGSSLVEIAEKYKLPIQNVNYISYAELIEDKIIAESADNIFELSEGELSYPIETED 358
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ V + K + K +++ S E +
Sbjct: 359 KSYLILVELKSIQPAKIPEFDAIKEQVNKAWIKRNIADVNL-KIIKDLAKEYNSDQENIK 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
K I + + +++ + G + P + D Y
Sbjct: 418 ELKATGIKISKKSYIRSEMENDLTLTPEILLSIFNTTIGSNTP-----VFQVGDEVYFAH 472
Query: 467 QIKESIPARDRKLEEVLTD--VKKDWKTVKTAEEVS 500
SI K V ++ + + K E ++
Sbjct: 473 IKSSSIDELTAKNIHVNSEKNIIYNIKNSVIDELIN 508
>gi|161870081|ref|YP_001599251.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
gi|161595634|gb|ABX73294.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
Length = 512
Score = 106 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 78/482 (16%), Positives = 166/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S +
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISEQSLNAAV 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL++ + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLPAPVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKNAFEERVARLP 247
Query: 473 PARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN G + T
Sbjct: 248 ANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPSSLAEAAKNSGLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ VFS + N + V + +
Sbjct: 308 ETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTINSETAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRTEAAKLAEN 389
>gi|322652566|gb|EFY48920.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
Length = 141
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
E + Q++G + L +++L+ L+ A LDQ+ ++ L +V
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLDQYSRELKLGISDEQVKQ 119
Query: 118 EIARSPLFHGKDNKFSHDVFV 138
I +P F D KF ++ +
Sbjct: 120 AIFATPAFQV-DGKFDNNRYN 139
>gi|291276818|ref|YP_003516590.1| hypothetical protein HMU05900 [Helicobacter mustelae 12198]
gi|290964012|emb|CBG39851.1| putative periplasmic protein [Helicobacter mustelae 12198]
Length = 490
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 5/227 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE +++ + V I++ V+ + F + + V VG+ K+ F ++
Sbjct: 1 MLEWMQRHKKYLVVTIWVSVIALVFAGMVGWNPSDISFAGNNVAKVGKIKISDQEFQYTF 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ +Q +G ++ ++A++ LD L L+ A L F D+GL + I
Sbjct: 61 QRVFNEYNQMVGGDLDMDQAKNFQLDNITLQQLIQKAQLQNFALDLGLRVQDREIIEVIE 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++ F +D F ++ L +N K + L ++ F
Sbjct: 121 KNESFQ-RDGTFDKKLYREVLKNNNLNVKFFEQSVRDSLLIQKLLEFFPASTTQLERRSI 179
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+ + + + + L ++EK K NY P
Sbjct: 180 GGSIALTDTIEYEVLSTSP----IKQQITEQKLKDFWEKNKANYTNP 222
>gi|42523892|ref|NP_969272.1| hypothetical protein Bd2456 [Bdellovibrio bacteriovorus HD100]
gi|39576099|emb|CAE80265.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
Length = 345
Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats.
Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 5/167 (2%)
Query: 1 MLEIIRK--ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
M + +++ +++ A + + + F+ +G+ + + GS V V + + F
Sbjct: 5 MADKMKRGINAKSVTAMVIFGAIIMVFVFFGMPGQMGAGVGS--VARVNNTLISLADFQQ 62
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ G ++ R + L ++ L+NLV + Q + G+ A V
Sbjct: 63 EENRIQQYYQNLFGNQMDFGSQRQL-LRQQALENLVRMELVSQAAQKSGILATDAEVRDF 121
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
I + F ++ F D ++ + + + D K +S
Sbjct: 122 IVKDIPFFQQNGMFQKDFYMRYIEQTRTTPANFEDKVRKDISNVRTR 168
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 35/275 (12%), Positives = 79/275 (28%), Gaps = 12/275 (4%)
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ F + + + + + + + + + + + + D+P
Sbjct: 71 YQNLFGNQMDFGSQRQLLRQQALENLVRMELVSQAAQKSGILATDAEVRDFIVKDIPFFQ 130
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
G K + I +D V + Q + + L
Sbjct: 131 QNGMFQKDFYMRYIEQTRTT--PANFEDKVRKDISNVRTRALFELATQPTAVELKKIQDL 188
Query: 480 EEVLTDVKKDWKTVKTAEEV--SSKANQLVLEYSKEGKNFRDIG-----KNLGASLLTTN 532
+V + A + KA+ + + + K L A+ T
Sbjct: 189 RAAKINVLFVKIDSEAATKALTKEKADAAIKALDEALVKGDEAAVNAQLKELKATWEETG 248
Query: 533 QINRMDNENKFFGYDGI-SQVFSGPVEM-VKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ VF + + +G S V K+ SKV V+ +
Sbjct: 249 LVELGSETFPKITSSVATEAVFELSKTEPLLKRLVRDGNSKYVLKLKESKVEEVKTLEPM 308
Query: 591 ISYLTQMMNKD-LLDSVIAYLKSQYSVTVHDNLIQ 624
+ + Q D + ++ I +S+ VT++ +Q
Sbjct: 309 SAEMMQKRRGDGMFEAWINMFRSKSHVTMNTQALQ 343
>gi|224024283|ref|ZP_03642649.1| hypothetical protein BACCOPRO_01006 [Bacteroides coprophilus DSM
18228]
gi|224017505|gb|EEF75517.1| hypothetical protein BACCOPRO_01006 [Bacteroides coprophilus DSM
18228]
Length = 711
Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/611 (10%), Positives = 175/611 (28%), Gaps = 40/611 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F+ L G V V + + +
Sbjct: 4 LQTIR--SKGPLLVIVIGLALFAFIAGDAWKILQPHQGKQDVGEVNGETLSAQDYQKMVD 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ +I G + + + ++ + V+ + E +GL + I
Sbjct: 62 ELSEVIKLTNGLN-SLNEDQLSNVKDQVWQSYVNNKLIAAEAEKLGLTVTDAELQAIIDQ 120
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L +Y + + V G
Sbjct: 121 GTHPMLMQTPFRNPQTGAFDKDMLKKFL-------VDYANLNNSQMPAQYVEYYQTLGNF 173
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
+ + E + + + R + +
Sbjct: 174 WKFIEKSLRQSTLAEKYQNLIMRSLISNPV-------------AAEDAFKGRTEQSDMLL 220
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + +++S+DE++ Y+ KE++ + + + +
Sbjct: 221 AAVPYSSIADSTVQVSDDEIRKLYDTRKEQFKQL--AETRNIRYIDVRVVPSDADRQAVL 278
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
K+ + + + D + S + + + ++ + + + V
Sbjct: 279 KEVTDYSNQLVNTSDDFATFVRSTGSVVNYADVPVNKTVLPQDVTARLDSVAINEVYGPY 338
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
N +F+ + K A + + + + + ++
Sbjct: 339 YNQADDSYNAFKIIAKTTAPDSIQFRQIQVYANTEDATKTLADSIFTALKGGADFAELAQ 398
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
A A E + P+++ ++ L + + + +
Sbjct: 399 KYGQTGEANWISAASWEGAELDAENAKYINALISQPVNELASLNLGQATVILQVMNKKAM 458
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
K+ V V+ + +T + +K +Q V + + ++ + + G +L+
Sbjct: 459 KDKYKVAVVKLPVEF---SKETYNDAYNKFSQFVAQ-NTTLEDLKKNAEESGYTLIPRTD 514
Query: 534 INRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ ++ + + VF+ V V + + +V V ++ +
Sbjct: 515 FSSDEHYVGGVHSTREALKWVFAAKVGEVSPLYECGDNDHLMVVSVEKINPKGYRDINSV 574
Query: 591 ISYLTQMMNKD 601
L + +D
Sbjct: 575 ADMLRAEIRRD 585
Score = 61.0 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 42/329 (12%), Positives = 101/329 (30%), Gaps = 12/329 (3%)
Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI-HGSFGYV 349
K G F +LA++ G++ + + S E + D+ + + + + +
Sbjct: 388 KGGADFAELAQKYGQTGEANWISAASWEG----AELDAENAKYINALISQPVNELASLNL 443
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
++ + ++ K ++ + + E + Y + +F+A T+++++ + +
Sbjct: 444 GQATVILQVMNKKAMKDKYKVAVVKLPVEFSKETYNDAYNKFSQFVAQNTTLEDLKKNAE 503
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
L + V + + L VF + M V ++
Sbjct: 504 ESGYTL--IPRTDFSSDEHYVGGVHSTREALKWVFAAKVGEVSPLYECGDNDHLMVVSVE 561
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ P R + V ++ + + K AE++ ++ N +G +
Sbjct: 562 KINPKGYRDINSVADMLRAEIRRDKKAEKIMAQMNGFNSLDQVKGMTDAVSDSVKHVTFS 621
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
I I V PI+ + +V N + K
Sbjct: 622 APAYIAVTRA-----SEPVIGAVAEKTAAGKLSAPIKGNAGVYMIQVYNKDKSAEEFNAK 676
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
M I L+++ V
Sbjct: 677 TEESNLTNMAARYASQCIYDLRTKAEVVD 705
>gi|51473990|ref|YP_067747.1| hypothetical protein RT0810 [Rickettsia typhi str. Wilmington]
gi|51460302|gb|AAU04265.1| rickettsial conserved hypothetical protein [Rickettsia typhi str.
Wilmington]
Length = 526
Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 83/512 (16%), Positives = 185/512 (36%), Gaps = 14/512 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IRK S +++ ++ ++ F+ +G+ D L + V+ + + F+ +
Sbjct: 1 MLDNIRKTSDSFIMRVLFAMIAFAFVGFGIKDILNVRRNNDIVIFSHARNISQEDFLRAK 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E+ IS++IG + E + +D +IL +L+ LD + L+ + +
Sbjct: 61 SLEINAISKQIGKSLTDEEIIQLNIDNRILKSLIYNNILDYLVSYYDLDLGDDTIKILVK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
SP+F F +F + I E +Y+ ++ + + + +V FV + D
Sbjct: 121 ESPIFKNAQGVFDIKIFKTYFRNAYIGEDKYLLNFKEQVLKNIIVSTFVKSFYVPKSMTD 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVP---AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ E R V+ + L+ ++ P I P++ L +++ K + PE + SYI
Sbjct: 181 NIVDYMAERREVELLQLDLQNKPKDLQIHTPTDQQLKDFYQDNKAAFEVPEKRSFSYIKA 240
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
++ + + I I+ DEL A Y +NK+++ QL + + + K
Sbjct: 241 NIKDLK--ISITQDELLAFYNENKDEFGDQSFEAVQTQLHDLFRAKKFDILNMEFANKLE 298
Query: 297 IQLAE--EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
++A + L + Y+ L + + I +++
Sbjct: 299 DEIASGASLVEISEKYKLPIQNVNYLSYAELIEDNIIADNIAENADSIFELAEGELSYPI 358
Query: 355 NIKPSFTVSFQEVKK-DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI--- 410
+ E+K A + ++V E + + + ++++
Sbjct: 359 EAGDKSYLLLVELKSIQPAKIPKFDAIKDQVNEVWIKRNIEDENLKMIKDLAKEYNAGQK 418
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
++ + + K E+ + S + D Y
Sbjct: 419 KEFNVAGIKISRKSYIRAEMENDLTLTPEILLSIFNTKIGSNTPVFRVGDVVYFAHIKSS 478
Query: 471 SIPARDRKLEEV--LTDVKKDWKTVKTAEEVS 500
SI + V ++ + K E ++
Sbjct: 479 SIDELTAQNIHVNLENNIIYNIKNSVIEELIN 510
>gi|325285709|ref|YP_004261499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga lytica
DSM 7489]
gi|324321163|gb|ADY28628.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga lytica
DSM 7489]
Length = 700
Score = 105 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 79/589 (13%), Positives = 168/589 (28%), Gaps = 49/589 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
LE IRK + V + + + F+I G+ +D + V +TV + + + F
Sbjct: 4 LENIRKRTT--VLILIIGLALFAFVISGIFSADGMSGVKTGTTVAEINGKDISIDKFRRE 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A S+ + + D V A L +D+G+ + ++ I
Sbjct: 62 VEAASNRFGAG---------ATSMQVVNSVWDQEVKNAILSDEFDDLGISIEQDQIINFI 112
Query: 120 ARSPLF------HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
A +P F ++ F +F ++ + +
Sbjct: 113 ASNPGFSQNPQYQNENGVFDEYIFKEFISTLKTENPAQYALWLQQ--------------- 157
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
++ AK + N + + +N + + + A +S
Sbjct: 158 -EQAIMQAAKEQTYFNLVKAGLGATLKEGELDYKLANDKIDIKYVRVPYTSIADSSVAVS 216
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ K+ + + ++ + E+ S E + + + G
Sbjct: 217 KDEIAAYIKDHEEDFKQEKARDFQFVYFEEKPSLEDEKAVEAKVVSLLNDKVEYNDTILG 276
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+ + EE SD+ + K GD + + +
Sbjct: 277 FRNTKNIEEFLDRNSDLKYDTIYKTKNVLSPKFADTLMALNIGDIYGPYRDGNYFKVTKM 336
Query: 354 SN-IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
+ K + + + + +E KR EE L D +
Sbjct: 337 MDKKKDGNVKASHILVAWEGAERANPEVKRTKEEAKKRAEELLKDAKKGDVEFSVLARDN 396
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
D P G ++ P ++ +F + + V G ++
Sbjct: 397 SDGPSASRGGDLGYSQQGRMTPKFDEFMFS-----NNVGTIGMVETEFGFHIV------K 445
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ L V T + + T + ++A Q + K F ++ K N
Sbjct: 446 IDDKQDLVRVATLARAIEASEATINSLFTEATQFESDAKDSDKTFLELSKEKKYVARPVN 505
Query: 533 QINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+I MD + F+ E+ Y V ++T
Sbjct: 506 KIKAMDENLPGLAAQRAIVQWAFNDDSEVGDIKRFPVNNGYAVVQLTGK 554
Score = 92.2 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/524 (10%), Positives = 145/524 (27%), Gaps = 35/524 (6%)
Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
I D + + I + + + Y + +
Sbjct: 208 IADSSVAVSKDEIAAYIKDHEEDFKQ-------------EKARDFQFVYFEEKPSLEDEK 254
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
V V + D F +++ N+ + VL+ F
Sbjct: 255 AVEAKVVSLLNDKVEYNDTILGFRNTKNIEEFLDRNSDLKYDTIYKTKNVLSPKFADTLM 314
Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
+ + + + ++A + + V++ +K
Sbjct: 315 ALNIGDIYGPYRDGNYFKVTKMMDKKKDGNVKASHILVAWEGAERANPEVKRTKEEAKKR 374
Query: 283 ADEAFQSLKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
A+E + KKG +F LA + S G ++ F + +
Sbjct: 375 AEELLKDAKKGDVEFSVLARDNSDGPSASRGGDLGYSQQGRMTPKFDEFMFSNNVGTIGM 434
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ FG+ I + + + V+ + + + E + + +
Sbjct: 435 VETEFGFHIVKIDDKQDLVRVATLARAIEASEATINS----LFTEATQFESDAKDSDKTF 490
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
E+S+ +K V+ + + + + + + ++ F D + + +G
Sbjct: 491 LELSKEKKYVARPVNKIKA-----MDENLPGLAAQRAIVQWAFNDDSEVGDIKRFPVNNG 545
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
Y VQ+ +E+ V + K A ++ + + +GK+ I
Sbjct: 546 -YAVVQLTGKYKEGLMSVEDASFMVLPKLRKEKKAAQIIA---------ANKGKSIDAIA 595
Query: 522 KNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
K+ S T + + G + + F +++
Sbjct: 596 KDNNVSASTASALTMKSPTIPGAGREPFVVGSAFGLNQGDTSGLLEGETGVFMLTVTKKE 655
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ + + + + + +V+ LK + + +
Sbjct: 656 EAPKLDNYSTYANMVQTTAMQRANSAVLNALKKSAEIEDNRAMF 699
>gi|157164574|ref|YP_001466661.1| glutamate-1-semialdehyde 2,1-aminomutase [Campylobacter concisus
13826]
gi|112800465|gb|EAT97809.1| putative peptidyl-prolyl cis-trans isomerase D, homolog
[Campylobacter concisus 13826]
Length = 485
Score = 105 bits (260), Expect = 3e-20, Method: Composition-based stats.
Identities = 72/516 (13%), Positives = 161/516 (31%), Gaps = 47/516 (9%)
Query: 1 MLEIIRKASRTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML ++K + V I+ + + F+ WG D + + +++V VG + +
Sbjct: 1 MLSWMQKHKKYLVVTIWVSTIAFVGAGFVGWGAYD--LNSNRATSVAKVGHRNISVQELQ 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + + E+A +GL+ L + L F +DIGL + V
Sbjct: 59 QKYDRLYQYYNNVFEGKLTQEKAEELGLENAALQAAIQENLLLNFADDIGLSVNKDDVLK 118
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F KD F +++ L R IN ++ D+ + + + +
Sbjct: 119 YIIVDPTFQ-KDGVFDKNLYYDVLRRARINPTDFEDNLKLTILLDKLRTI----LNLPAS 173
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D A V L +E K+NY A I
Sbjct: 174 KEDIAMMEASFFMQDKLAVQIVSADQNEIKVDEKELKDLWEINKNNYMAKTLYGIDTYFV 233
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + + + L++ Y +N++KY + + + D + K
Sbjct: 234 ESEKSDANESV----LKSYYNENQDKYKGSDDKIKPFNEVKAEVNKDYNIEQSKTNALEK 289
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+A ++ + ++ + + + AK G+ GY+IA V +I
Sbjct: 290 YVAVKKAELATNGFISVNEDN----ATFSLDEIKGAKVGEVIKPFIYKDGYLIARVKSIT 345
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P +SF++ + ++ + K + +
Sbjct: 346 PPQPMSFEQARANVLEIYKSKK-----------------------------EKEILTAKA 376
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
D + + D + + +++
Sbjct: 377 KDTLQNFKGTDVGFVSREVNGSIAGLNESDTRAFVSQLFDTNNTKGYVILDDKAVVYDIL 436
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ + ++ ++K + K N+L+ + + +
Sbjct: 437 EQRLLTNNINNNYKQITQQNVAMLKNNELIKDLTNK 472
Score = 48.3 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 30/300 (10%), Positives = 87/300 (29%), Gaps = 13/300 (4%)
Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
I + + D + ++ + + + + + +
Sbjct: 193 QIVSADQNEIKVDEKELKDLWEINKNNYMAKTLYGIDTYFVESEKSDANESVLKSYYNEN 252
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
+ K +D + + + D + K +++ + + ++
Sbjct: 253 QDKYKGSDDKIKPFNEVKAEVNKDYNIEQSKTNALEKYVAVKKAELATNGFISVNEDNAT 312
Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
DG Y+ ++K P + E+ +V + +K+ K E
Sbjct: 313 FSLDEIKGAKVGEVIKPFIYKDG-YLIARVKSITPPQPMSFEQARANVLEIYKSKKEKEI 371
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
+++KA + + +G + + + + S+ N+ +SQ+F
Sbjct: 372 LTAKAKDTLQNF--KGTDVGFVSREVNGSI---------AGLNESDTRAFVSQLFDTNNT 420
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-LTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Y + + + + + N +L+ + L Y V
Sbjct: 421 KGYVILDDKAVVYDILEQRLLTNNINNNYKQITQQNVAMLKNNELIKDLTNKLLKYYEVK 480
>gi|194333180|ref|YP_002015040.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris
aestuarii DSM 271]
gi|194310998|gb|ACF45393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris
aestuarii DSM 271]
Length = 694
Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats.
Identities = 82/650 (12%), Positives = 174/650 (26%), Gaps = 72/650 (11%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
+ +R + V L + WG++ + F+ G V V + ++ +
Sbjct: 1 MTKLRDKT-HIVLYTLLAAFLALIVFEWGMNSSGFTGGGV-LAGKVNGTPVEYRNYEQVY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + S+ L ++ + LV L+ ++ + V +
Sbjct: 59 DSLVDNFRRTSPQEEISDEIER-ELRQRAWNLLVDQILLEDALQSFSIHVADAEVLAAVE 117
Query: 121 RSPLFHGKDNKF--------SHDVFVS--RLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
F D F + + + L + +
Sbjct: 118 SDSPPMIIRQNFINPETGEIDRDRFEQARMDPANSDIWLQIEEIIRRELMVQKLQRVLAT 177
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQWFEKYKDNYRAPE 228
++ ++ LD F + S ++ L S+ L +++E ++ +R
Sbjct: 178 TVKVTSEELDALYDRQFASYSATFLTLPFSAAGPDSLFAVSDKELNEYYESNRELFRQEP 237
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ + Y+ F + EL+ + S + + L ++ +
Sbjct: 238 TRSLDYVSFPALPTGRDSVAVRMELEGLAAEFA---ASDDDSSFVSLQSDRGDTFNKRYT 294
Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
+ +G + + + + K G V+ S
Sbjct: 295 RADFSPAAAAAVFDSASLSDGALIGPVADRNVY------RLLKIRKSGTDGAVVRASHIL 348
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ + A +E + L G S D ++R
Sbjct: 349 LGFPAGDA----------------------AARNDAEERAASIMNELKNGKSFDLLAREF 386
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
P G KG V + P VA G ++ ++
Sbjct: 387 SDDPGSAPHGGDLGWFAKGAMVP-------DFEKAAFGAAPGRVVGPVATQFGLHII-KV 438
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+ V+ + T E V A + +E +G F+ G +
Sbjct: 439 TGRDNRFI----DCSEVVRSIRPSSNTLESVRRTAAEFQIEAVDKG--FQKALGASGLKV 492
Query: 529 LTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----- 582
+T + F F V + +VV +VT
Sbjct: 493 SSTGPFTKNGMIPGIGFNNQITRFAFDASKGDV-SDVVATDDGFVVLQVTERNDSGYRSL 551
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAY-LKSQYSVTVHDNLIQRYLDGEK 631
+D+ L LD++++ L S + + R L G K
Sbjct: 552 DETVRDQITRLLRDRKKGVALDAMLSAGL---ASSKQNLEALSRSLAGSK 598
>gi|225010080|ref|ZP_03700552.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
bacterium MS024-3C]
gi|225005559|gb|EEG43509.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
bacterium MS024-3C]
Length = 706
Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats.
Identities = 77/588 (13%), Positives = 177/588 (30%), Gaps = 43/588 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
LE IR+ + V + + + F+I G+ + S G S + SV +++ F
Sbjct: 4 LEKIRQRTT--VLILIIGLALFAFVISGVFTNSGSGSPMGGSAIGSVNGEEISIDDFRQK 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ + A +V L ++ ++ + + L+Q IED+G+ + ++ I
Sbjct: 62 LEVAAQRAGSQ---------ATTVQLVNQVWNSSLRTSLLNQEIEDLGISVEGDQIMNFI 112
Query: 120 ARSPL------FHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFVGGM 172
+P F ++ FS +F++ +A N Y L+ +
Sbjct: 113 KNTPSYSNQPEFQDENGIFSESLFIAAVADWKANNPYRYSLWLQDELAIMQSAKEQMYFN 172
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
+ + F+ + + V + + + +T + +
Sbjct: 173 LVKAGVGTTLEEGKFDYKLANDKVDISYVRMPFSAVPDTTITVTAGEIESYISKNPALFK 232
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
D+ + + S ++ QA + E + +
Sbjct: 233 QEPARDIRLVYFEEKASKEDEQAVKDAVVGLLSDT----------EEYNENTGTTEKVAG 282
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
L ++ F + + DSI SL F P + V
Sbjct: 283 FLNTTDLGAFLERNSDITYDTIFRAKNEIVSTFKDSIISLNPGQTFGPYKENNAYKVSKL 342
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V+ + + + + + +E K L + +
Sbjct: 343 VAKKNNGTVKASHILISFVGAERVSPTVTRTKEEARKEANRLLIEAKKSTTVFAELARDN 402
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
D P G +E P +F L + + V++ +
Sbjct: 403 SDGPTASRGGDLGFFQEGQMTPKFNDFVFSNSVDAIGLVETEF------GFHIVRVDDKQ 456
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
++ T + + +T + ++A + +E ++ K + I K + + N
Sbjct: 457 DIF-----QIATLSRDVAPSEQTINTIFTQATKFEMEVTENPKEYVGIAKEGNFDVRSVN 511
Query: 533 QINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
++ MD + F+ ++ YV+ ++T
Sbjct: 512 KLLAMDENLPGLAEQRGVVQWAFNEDTDLGAIKRFNVNNGYVIVQLTA 559
Score = 91.1 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 57/518 (11%), Positives = 138/518 (26%), Gaps = 27/518 (5%)
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ G + I+++P ++ + +E+ D +LS T+
Sbjct: 213 ITVTAGEIESYISKNPALFKQEPARDIRLVYFEEKASKEDEQAVKDAVVGLLSDTEEYNE 272
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
G L+ F R+ D + +
Sbjct: 273 NTGTTEKVAGFLNTTDLGAFLERNSDITYDTIFRAKNEIVSTFKDSIISLNPGQTFGPYK 332
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
E + ++ S+ + + + RT E+ + EA
Sbjct: 333 ENNAYKVSKLVAKKNNGTVKASHILISFVGAE---RVSPTVTRTKEEARKEANRLLIEAK 389
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+S + + + + LG F + + D +FS + ++ FG
Sbjct: 390 KSTTVFAELARDNSDGPTASRGGDLGFFQEGQMT-PKFNDFVFSNSVDAI--GLVETEFG 446
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ I V + + FQ + + K E I++
Sbjct: 447 FHIVRVDDKQD----IFQIATLSRDVAPSEQTINTIFTQATKFEMEVTENPKEYVGIAKE 502
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + + + + + ++ F +D L + +G Y+ VQ
Sbjct: 503 GNFDVRSVNKL-----LAMDENLPGLAEQRGVVQWAFNEDTDLGAIKRFNVNNG-YVIVQ 556
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + + + + K A + +K G G S
Sbjct: 557 LTARYRSGTMTVADASATALPILRKEKKAVWILK---------NKGGNTLESFAAASGQS 607
Query: 528 LLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ T + ++ G + + + F+ + ++V + +
Sbjct: 608 VETASALSVKSPIIPGAGREAYVVGKAFNLTEGATSSLLVGETGVFLVQLNKKQEAVALD 667
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ L + S LK ++ + +
Sbjct: 668 SYATYAEALKAGTQNSIFFSSYNALKETATIEDNRAVF 705
>gi|86143854|ref|ZP_01062222.1| peptidyl-prolyl cis-trans isomerase [Leeuwenhoekiella blandensis
MED217]
gi|85829561|gb|EAQ48024.1| peptidyl-prolyl cis-trans isomerase [Leeuwenhoekiella blandensis
MED217]
Length = 707
Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats.
Identities = 90/616 (14%), Positives = 182/616 (29%), Gaps = 52/616 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR+ R+ + + F++ + + + + SV + F
Sbjct: 4 LNKIRQ--RSVFLIAIIALALFAFVLADVFKNGGFSTEKSQRVLGSVNDTDIEQQEFAQL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG-- 117
Q+ G + + +A + VS LD+ E++G+ + R+
Sbjct: 62 VDQQTARY----GNNITNTQAV-----NAAWEQEVSRIILDEQYEELGISIEQDRINDLL 112
Query: 118 --EIARSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYIDHYTKMLSRTDVVGMF 168
+ P F ++ FS +A + Y K R +
Sbjct: 113 KEALQTDPNFQNENGVFSEQKLKEYIATLKSTNPQMYQQWVAYEQQLAKNEQRQIYFSLI 172
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAP 227
G+ S A R ++Y+ + S +T + +++ + ++
Sbjct: 173 KAGLNTSFKEGQMAFEMENNLRDLEYVQVPYTSIPDEEVSVSKEEITAYIKEHSNEFQTE 232
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ I Y+ F+ K E + L EK E + + ++
Sbjct: 233 AARNIRYVKFNEDPTLKDEEAVKESLTQLLEKRVE--------------YTAATKTNDTV 278
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
L E S + K +P + + +G
Sbjct: 279 AGLATTTNPEDFVNEY--SDERYTDAYLFKNELPSAAADE--LWALDEGAVYGPYKDGET 334
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ I+ V + T V+ A+ + K + LA + +
Sbjct: 335 FKISKVV----AVTQIPDSVQSSHILLTYQGLANAGAQTRTKAEAKALADSLAGVIKAAP 390
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
K+ + K+ G A + F F D V G ++
Sbjct: 391 SKLADLAPEFSADGSKEKGGDLGYATKGRFVKPFNDFIFDGKTGDVGVVESRFGYHVIRI 450
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ R KL V V+ + +T V ++ + + +++ F DI K G +
Sbjct: 451 TDQKNVQRAIKLATVTKAVEP---SQETINNVFNETTKFQMAVTEDKNGFDDIAKEGGYN 507
Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ N IN +D G + I F + Y+V +VT +
Sbjct: 508 VRPVNNINALDETLPGQGSQREIIRWAFDEERKTGDVERFNVEGGYLVVQVTKKTEKGLL 567
Query: 586 EKDKFISYLTQMMNKD 601
D+ +T ++
Sbjct: 568 PADEASPRVTPVLRNQ 583
Score = 89.1 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 63/520 (12%), Positives = 134/520 (25%), Gaps = 32/520 (6%)
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ + I +F + + + + D S T ++
Sbjct: 211 VSVSKEEITAYIKEHSN------EFQTEAARNIRYVKFNEDPTLKDEEAVKESLTQLLEK 264
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
V + A N ++ N + + ++
Sbjct: 265 RVEYTAATKTNDTVAGLATTTNPEDFVNEYSDERYTDAYLFKNELPSAAADELWALDEGA 324
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
Y K + D +Q+ + + + A
Sbjct: 325 VYGPYKDGETFKISKVVAVTQIPDSVQSSHILLTYQGLANAGAQTRTKAEAKALADSLAG 384
Query: 288 QSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
K LA E S LG +K + K GD V+
Sbjct: 385 VIKAAPSKLADLAPEFSADGSKEKGGDLGYATKGRFVKP--FNDFIFDGKTGDVG-VVES 441
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FGY + +++ + + + A + + E K D+I
Sbjct: 442 RFGYHVIRITDQ-KNVQRAIKLATVTKAVEPSQETINNVFNETTKFQMAVTEDKNGFDDI 500
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
++ + ++ + + G+ + +++ F ++ + +G Y+
Sbjct: 501 AKEGGYNVRPVNNINALDETLPGQ-----GSQREIIRWAFDEERKTGDVERFNV-EGGYL 554
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
VQ+ + +E V + K AE++ G + I
Sbjct: 555 VVQVTKKTEKGLLPADEASPRVTPVLRNQKKAEQIKKNI---------SGSDLSAIASAN 605
Query: 525 GASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
++ T+ +N + G + + F V PIE V KVT
Sbjct: 606 NTTVQTSPGVNLKNPTLAGSGTEPKVVGKAFGLEEGEV-SEPIEGNRGVYVVKVTKITPA 664
Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ F + +I LK + +
Sbjct: 665 RELDNYASFAVQKQNADRATVNMRIIQALKDAAEIEDRRS 704
>gi|330889993|gb|EGH22654.1| periplasmic folding chaperone [Pseudomonas syringae pv. mori str.
301020]
Length = 208
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 33/209 (15%), Positives = 69/209 (33%), Gaps = 5/209 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR S+ W+AK + ++ G+ + S V + + + +
Sbjct: 1 MLQNIRDNSQGWIAKTIIGIIIALMAFTGIEALFTATSNKQNAAEVNGEDISQNELSQAV 60
Query: 61 KQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++Q++G + L + L+ L Q D +
Sbjct: 61 DMQRRQLAQQLAQQLGKDFDPAMLDEKLLRESAPKGLIDRKLLLQGATDAKFSFSDAALD 120
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++P F D KFS D F + + G + ++ + + V G ++
Sbjct: 121 QQLLQTPEFQV-DGKFSADRFDQVIRQLGYSRLQFRQMLGQEMLIGQVRAGVAGSAFVTD 179
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
+D R + R + L
Sbjct: 180 AQVDAFARLEKQTRDFASLTLPADTTAGK 208
>gi|304387500|ref|ZP_07369689.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
13091]
gi|304338387|gb|EFM04508.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
13091]
Length = 512
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 79/482 (16%), Positives = 167/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A+I L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQILLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISDHSINNAM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E + G S + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE------QAGGGSPS--------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIHDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ YE+ + P + + K K +K
Sbjct: 223 DFADKQTVSETEVKNVYEERVARLPANEAKPSFEQEKAAIENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL++ + S K + L D+ S + + +
Sbjct: 283 GDDAFNHPASLAEAAKNSSLKVETQETWLSRQDAQMSGLPENLINAIFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKEVLAQLSGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAITP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 34/362 (9%), Positives = 90/362 (24%), Gaps = 14/362 (3%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
+ + + S + F L + +G + D
Sbjct: 49 DHSINNAMQNEQAGGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFH 108
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G F + + + ++ + + E RL
Sbjct: 109 DANGKFDHALLNRYLSQRHMSEDQFVEEIHDQFALQNLVNLVQNGVLVGDAQAEQLIRLT 168
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + E I + + D K+ +P +L + D K
Sbjct: 169 QVNRTI-RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADK 227
Query: 453 DHTVALPDGSYMWVQIKESIPARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ ++ + E+ ++ + K K + + +L +
Sbjct: 228 QTVSETEVKNVYEERVARLPANEAKPSFEQEKAAIENELKMKKAVADFNKAKEKLGDDAF 287
Query: 512 KEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIEN 567
+ + KN + T ++R D + + I+ +FS + N
Sbjct: 288 NHPASLAEAAKNSSLKVETQETWLSRQDAQMSGLPENLINAIFSDDVLKKKHNSEVLTIN 347
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ V + + + + Q + + ++ ++ +
Sbjct: 348 SETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAE---NKAK-----EVLAQLS 399
Query: 628 DG 629
G
Sbjct: 400 GG 401
>gi|308389331|gb|ADO31651.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
meningitidis alpha710]
gi|325136276|gb|EGC58884.1| hypothetical protein NMBM0579_1013 [Neisseria meningitidis M0579]
gi|325208178|gb|ADZ03630.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
Length = 512
Score = 104 bits (258), Expect = 4e-20, Method: Composition-based stats.
Identities = 77/482 (15%), Positives = 167/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISDHSINNAI 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGGPS---------RDAVFQSLLQRAYLKQGAKLLGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPANEAKLSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL++ + S K + L D+ S + + +
Sbjct: 283 SDDAFNHPASLAEAAKNSSLKVETQETWLSRQDAQMSGLPENLINAIFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + +++ K++ + + A K + A ++
Sbjct: 343 VLSINNEIAWVVRAKEVREEKTLPFAEAKDAVRQAYIRAEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPTNGKPAYVRLTGLPAPVIVEVQAITP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/202 (10%), Positives = 55/202 (27%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKNAFEERVARLP 247
Query: 473 PARDR-KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN + T
Sbjct: 248 ANEAKLSFEQEKAAVENELKMKKAVADFNKAKEKLSDDAFNHPASLAEAAKNSSLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ +FS + N V + +
Sbjct: 308 ETWLSRQDAQMSGLPENLINAIFSDDVLKKKHNSEVLSINNEIAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRAEAAKLAEN 389
>gi|261392500|emb|CAX50051.1| putative peptidyl-prolyl cis-trans isomerase D (PPIase D; rotamase
D) [Neisseria meningitidis 8013]
Length = 512
Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats.
Identities = 79/482 (16%), Positives = 167/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISDHSINNAM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E + G S + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE------QAGGGSPS--------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL++ + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLPAPVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKNAFEERVARLP 247
Query: 473 PARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN G + T
Sbjct: 248 ANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPSSLAEAAKNSGLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ VFS + N + V + +
Sbjct: 308 ETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTINSETAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRTEAAKLAEN 389
>gi|242308919|ref|ZP_04808074.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239524583|gb|EEQ64449.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 489
Score = 104 bits (258), Expect = 5e-20, Method: Composition-based stats.
Identities = 57/471 (12%), Positives = 154/471 (32%), Gaps = 19/471 (4%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ ++K + + I++ + F+ WG S S+ V VG KV
Sbjct: 1 MIGFMQKHKKYLMVIIWISTIAFIGAGFVGWGSYSF---SSTSNAVAVVGDIKVSIDKMQ 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + +Q +G ++ E+A+ +G++++ ++NL+ A + + D+GL +
Sbjct: 58 REYARLYNIYNQLVGGTLDDEQAKKMGIEEQAINNLIVKALMLNYAYDLGLRVSKEEIIQ 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI F K KF ++ L + K++ + + ++ +
Sbjct: 118 EITSIEGFQNKG-KFDEQIYKQTLKDNQLKPKDFEEG----IEEGLLLQKLDALLNIPLT 172
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L+ + + + P + +++E K + Y +
Sbjct: 173 PLEIEALGAAYSMEDLVHIEVINKKDIVFTPKEEEIKKYWENNK----DIYQTQRGYEIS 228
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ I + + L+ Y+ K ++ + + ++ +K
Sbjct: 229 SIFIPLDSIAVEENALEQYYKDFKNQFLDSNGQIIPFAQAKDKVIEKFRDSQAQKEALKE 288
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV---IHGSFGYVIAHVS 354
++ +G++ + + + ++ P+ G GY+ A V
Sbjct: 289 YISLRKGENQEAKDSTIYEGSDEYGADFINLLSQAKEQETLKPIRVNNKGKEGYITAKVV 348
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT-SMDEISRREKIVSI 413
I PS +++ K + + ++E + ++ +
Sbjct: 349 KIIPSQPQTYEVAKANAKEDYVNAEQIRLLEEKATKQLGTFKGVNVGYIGYGSEVELAGL 408
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + K+ + ++ D K+ + + ++
Sbjct: 409 TKEEASDFIRILTTKKEEKGYILLENKAILYQIFDQRVKNSAIIKENLDFL 459
>gi|261378747|ref|ZP_05983320.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria cinerea
ATCC 14685]
gi|269144903|gb|EEZ71321.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria cinerea
ATCC 14685]
Length = 512
Score = 104 bits (257), Expect = 7e-20, Method: Composition-based stats.
Identities = 82/484 (16%), Positives = 170/484 (35%), Gaps = 29/484 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S GS +V VG +K+ S +
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGSDYIVQVGDEKISDHSINTAM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QAKGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH KFSH + L++ ++E ++++ + ++V + G+ S+ +
Sbjct: 103 DDPNFHDAGGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVSDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + NR++ N ++A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLVKLTQVNRTIRSHTFNPDEFIGQVKAADADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ YE+ + + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAYEERMARLPAEGEKLSFEKEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGS--FGYVIAH 352
A SL+D + S K + L D+ S + + + +
Sbjct: 283 GDDAFNHPSSLADAAKNSGLKVETQETWLSRQDAQMSGLPENVISAIFSDDVLKKKHNSE 342
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V +I + + + +A + V++ Y R E E ++
Sbjct: 343 VLSINNETAWVVRAKEVREEKTLPFEEAKDAVRQAYIRTEAVKLAEERAKE--VLAQLNG 400
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
V ++ V G + A + + K V L + V+++
Sbjct: 401 GKAADVKWSEVSVLGAQQARQSMPPESYTELLKAKPANGKPAYVRLTGLPAPVIVEVQAV 460
Query: 472 IPAR 475
P
Sbjct: 461 TPPD 464
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/362 (10%), Positives = 95/362 (26%), Gaps = 14/362 (3%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
+ + + S + F L + +G + + D
Sbjct: 49 DHSINTAMQNEQAKGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIVDDPNFH 108
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G F+ + + + ++ + S+ E +L
Sbjct: 109 DAGGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVSDAQAEQLVKLT 168
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + E I + D K+ +P +L + D K
Sbjct: 169 QVNRTI-RSHTFNPDEFIGQVKAADADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADK 227
Query: 453 DHTVALPDGSYMWVQIKESIPARDR-KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ ++ ++ E+ V+ + K K + + +L +
Sbjct: 228 QTVSETEVKNAYEERMARLPAEGEKLSFEKEKAAVENELKMKKAVADFNKAKEKLGDDAF 287
Query: 512 KEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIEN 567
+ D KN G + T ++R D + + IS +FS + N
Sbjct: 288 NHPSSLADAAKNSGLKVETQETWLSRQDAQMSGLPENVISAIFSDDVLKKKHNSEVLSIN 347
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ V + + ++ + Q + + + + ++ +
Sbjct: 348 NETAWVVRAKEVREEKTLPFEEAKDAVRQAY---IRTEAVKLAEERAK-----EVLAQLN 399
Query: 628 DG 629
G
Sbjct: 400 GG 401
>gi|325130315|gb|EGC53082.1| hypothetical protein NMBOX9930304_0938 [Neisseria meningitidis
OX99.30304]
Length = 512
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 75/482 (15%), Positives = 168/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISDHSINNAM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ K +S E++ +E+ + + E + EQ + E K +L
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPTNEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVS-----LADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
++ S ++ + + + D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLPAPVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/342 (10%), Positives = 84/342 (24%), Gaps = 6/342 (1%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
+ + + S + F L + +G + D
Sbjct: 49 DHSINNAMQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFH 108
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G F + + + ++ + + E RL
Sbjct: 109 DANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLT 168
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + E I + + D K+ +P +L + D K
Sbjct: 169 QVNRTI-RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADK 227
Query: 453 DHTVALPDGSYMWVQIKES-IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ ++ E+ V+ + K K + + +L +
Sbjct: 228 QTVSETEVKNAFEERVARLPTNEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAF 287
Query: 512 KEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIEN 567
+ + KN G + T ++R D + + I+ VFS + N
Sbjct: 288 NHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTIN 347
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ V + + + + Q + +
Sbjct: 348 SETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAEN 389
>gi|258593862|emb|CBE70203.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
Length = 337
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 32/207 (15%), Positives = 81/207 (39%), Gaps = 5/207 (2%)
Query: 2 LEIIRKASR--TWVAK-IFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFI 57
L+ IR ++ + + + FL+WG + G + + +V +++P++ +
Sbjct: 6 LKRIRGYTKALSVTLWLVIFAFIGTTFLVWGFRSTSGTGGGVVNPIGAVEGEQIPYAEYQ 65
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+++++ +K+G + + + L ++++ L+ L +GL +
Sbjct: 66 QAYQRQYQQYQEKLGDKFDEKILEQLNLKGQVVEGLIGRHLLLHEANRLGLVISPDELVA 125
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
EI P F F D ++ L + + + + + L V GG+
Sbjct: 126 EITAIPAFSDATG-FKRDKYLRTLQSARLTPERFEESLREDLLLRKVEEWVKGGVHLIPD 184
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPA 204
+A RF + +Y++ ++
Sbjct: 185 ETWEAFRFNRASVKAEYVMFSDLKTQQ 211
Score = 60.3 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 6/126 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD-GISQVFSGP 556
+ A Q V +K K + +I + G +T++ + + +
Sbjct: 208 KTQQAAVQNVAGLAKSNKPWEEIVRASGLKPVTSDFFSWDRSLPHIPDQERFKEAALVME 267
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY----LTQMMNKDLLDSVIAYLKS 612
V SY + +V + K E ++ + L Q + + I +++
Sbjct: 268 RGAVSPIIQGEKASY-LLRVIDRKDPDAAEFEREKAQFSRGLLQRKREQVFADWIRQVRA 326
Query: 613 QYSVTV 618
+ V +
Sbjct: 327 RAKVKI 332
>gi|254805018|ref|YP_003083239.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
alpha14]
gi|254668560|emb|CBA06033.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
alpha14]
gi|319410487|emb|CBY90848.1| putative peptidyl-prolyl cis-trans isomerase D (PPIase D; rotamase
D) [Neisseria meningitidis WUE 2594]
Length = 512
Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats.
Identities = 79/482 (16%), Positives = 168/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISDHSINNAI 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGGPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL++ + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL-PDGSYMWVQIKESIP 473
V ++ V G + A + + K V L + + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLPASVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 49.9 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKNAFEERVARLP 247
Query: 473 PARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN G + T
Sbjct: 248 ANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPSSLAEAAKNSGLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ VFS + N + V + +
Sbjct: 308 ETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTINSETAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRTEAAKLAEN 389
>gi|325202068|gb|ADY97522.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
Length = 512
Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats.
Identities = 77/482 (15%), Positives = 167/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISDHSINNAI 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGGPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPANEAKLSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL++ + S K + L D+ S + + +
Sbjct: 283 SDDAFNHPASLAEAAKNSSLKVETQETWLSRQDAQMSGLPENLINAIFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + +++ K++ + + A K + A ++
Sbjct: 343 VLSINNEIAWVVRAKEVREEKTLPFAEAKDAVRQAYIRAEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPTNGKPAYVRLTGLPAPVIVEVQAITP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/202 (10%), Positives = 55/202 (27%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKNAFEERVARLP 247
Query: 473 PARDR-KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN + T
Sbjct: 248 ANEAKLSFEQEKAAVENELKMKKAVADFNKAKEKLSDDAFNHPASLAEAAKNSSLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ +FS + N V + +
Sbjct: 308 ETWLSRQDAQMSGLPENLINAIFSDDVLKKKHNSEVLSINNEIAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRAEAAKLAEN 389
>gi|300775367|ref|ZP_07085229.1| possible peptidyl-prolyl cis-trans isomerase [Chryseobacterium
gleum ATCC 35910]
gi|300506107|gb|EFK37243.1| possible peptidyl-prolyl cis-trans isomerase [Chryseobacterium
gleum ATCC 35910]
Length = 717
Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats.
Identities = 67/621 (10%), Positives = 164/621 (26%), Gaps = 33/621 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L IR S+ W+ + + + FL+ S + V +K+ F +
Sbjct: 4 LGQIR--SKPWLLMGVIALALLAFLVNPDSIDKVFGKNPDVLGKVNGEKITREEFNDQLF 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
Q+ GL+++ LV + Q E +G E W +I
Sbjct: 62 VLQQQAEQQGRP--------KNGLEEQAWQLLVQSKLIKQQFEKLGFEMTDDYFWNQIQY 113
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+F ++ +F + + + + + ++ + + +
Sbjct: 114 DQMF-AQNQQFFDEKGNFKTQELKKEIETLQNTNPQGYAQWLKTRKTIEYRLMARQVFTN 172
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ ++ R A D + +K K N + + +
Sbjct: 173 LSAGITTGKKEAEELMKQRDQLADIDFVKVDYAAYLQKTKINVTTQDLADYIKKHPVMFK 232
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
E I ++ + EI + + +
Sbjct: 233 AEPSRNIGIVFFPSKPSAADDAAALKEITK--------LYSGGTDASGGTENFQNTKNDS 284
Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
+ SD + A G YV++ + +PS +
Sbjct: 285 MFVTANSDAPFNPQYLNPAQLPPTIKDQITSAAVGQTFGPYKEQDVYVVSKLVGKRPSDS 344
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
+ + + ++ + ++ + + + A
Sbjct: 345 TLSRHILIAFKGSPAGEGVTRTKEQA--KKLADSIGAIVKATPAKFTEFLKLSSDPNSAA 402
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW-VQIKESIPARDRKLE 480
G P+ + L + P V G ++ ++ K+S +
Sbjct: 403 QGGSLGWTTPETPFVPEFLAYLANN--PKGATGVVETQFGYHIINIEDKKSGSMGYKVAN 460
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
V D +T ++ Q+ K +F +I K R + +
Sbjct: 461 LVKAIKPSDATEAETDKKSRKFIQQV---QGKSFNDFVNIAKKNNYQFSNPKAAKRFEGQ 517
Query: 541 NKFFG----YDGISQVFSGP--VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
+ G D ++ F + F ++ +V + + + + + +
Sbjct: 518 LQGLGTEKDADILTWAFDKKRSKGDTELFTVDGTGDKIVVYLNGKQEAGLADPESVRDQI 577
Query: 595 TQMMNKDLLDSVIAYLKSQYS 615
++ L I+ +
Sbjct: 578 EVIVKNKLAAKQISEKIAAAK 598
Score = 94.2 bits (231), Expect = 6e-17, Method: Composition-based stats.
Identities = 59/530 (11%), Positives = 130/530 (24%), Gaps = 20/530 (3%)
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+++ + + I + P+ + + + ++ + TK+ S
Sbjct: 207 YLQKTKINVTTQDLADYIKKHPVMFKAEPSRNIGIVFFPSKPSAADDAAALKEITKLYSG 266
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ + + Y+ ++A + Q F YK
Sbjct: 267 GTDASGGTENFQNTKNDSMFVTANSDAPFNPQYLNPAQLPPTIKDQITSAAVGQTFGPYK 326
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ K + D + E ++ ++ +V
Sbjct: 327 EQDVYVVSKLVGKRPSDSTLSRHILIAFKGSPAGEGVTRTKEQAKKLADSIGAIVKATPA 386
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ E + L+ + + SLG + E + + K T V
Sbjct: 387 KFTEFLK----------LSSDPNSAAQGGSLGWTTPETPFVPEFLAYLANNPKGA--TGV 434
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ FGY I ++ + K T+A K +
Sbjct: 435 VETQFGYHIINIEDKKSGSMGYKVANLVKAIKPSDATEAETDKKSRKFIQQVQGKSFNDF 494
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
I+++ + ++G F D
Sbjct: 495 VNIAKKNNYQFSNPKAAKRFEGQLQGLGTEKDADILTWAFDKKRSKGDTELFTVDGTGDK 554
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ V + A E V ++ K A+++S K N I
Sbjct: 555 --IVVYLNGKQEAGLADPESVRDQIEVIVKNKLAAKQISEKIAAAKA------SNLDQIA 606
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
K A + + F + YV+ K + +
Sbjct: 607 KLFAAPKQSAQVNLLNPSVAGAMEPKVAGAAFGVAKGKLSNPVEGGTGVYVLIKKSETVN 666
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ +F LTQ + + L+ + + I L ++
Sbjct: 667 KQPGDLKQFTESLTQRSAGMFGQAWMKSLQDNADIEDYRIEIWNKLGNQQ 716
>gi|307637665|gb|ADN80115.1| Peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 908]
gi|325996265|gb|ADZ51670.1| Peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 2018]
gi|325997854|gb|ADZ50062.1| putative peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori
2017]
Length = 487
Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats.
Identities = 65/477 (13%), Positives = 161/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E ++ +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYENHRKDFKKPTSFKTHSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++G + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKGNAKNYTTQD-FEENNSPYTAEITQKLTALKPLEVLKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + ++
Sbjct: 348 QVKDELQNFDEAKSALKTRLTQEKTLMALQALAKEKLKDFKGKSVGYVSPNFGGTINELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H + + YM + +
Sbjct: 408 QEESAKFINTLFNRQEKKGFVTIGNKVVLYQITEQNFNHPFSAEESQYMQHLVNNTK 464
Score = 50.6 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/262 (12%), Positives = 83/262 (31%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKGNA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ + +
Sbjct: 300 KNYTTQDFEENNSPYTAEITQKLTALKPLEVLK-----PEPFKDGFIVVQLISQVKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFDEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTINE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLT 595
N+ I+ +F+ + G V++++T E+ +++ +L
Sbjct: 406 --LNQEESAKFINTLFNRQEKKGFVTI---GNKVVLYQITEQNFNHPFSAEESQYMQHLV 460
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 461 NNTKTDFFDKALIEELKKRYKI 482
>gi|163781832|ref|ZP_02176832.1| hypothetical protein HG1285_03078 [Hydrogenivirga sp. 128-5-R1-1]
gi|159883052|gb|EDP76556.1| hypothetical protein HG1285_03078 [Hydrogenivirga sp. 128-5-R1-1]
Length = 437
Score = 103 bits (256), Expect = 8e-20, Method: Composition-based stats.
Identities = 48/235 (20%), Positives = 90/235 (38%), Gaps = 14/235 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW--GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
M +I+K R +A I + V + FL W +SD +V + F +
Sbjct: 1 MYGLIQKHKR--LAAIIIAVASLSFLFWMFSVSDIKQMFGLQRCAAAVNDYCISLREFNH 58
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
++ ++ + + +++L +L++ L Q D+G+ A V
Sbjct: 59 ELRKYQSLLEK---------EELRTLVKRQVLFSLINRELLYQKALDVGVVASDREVAEL 109
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I + P F + KFS ++ L R G+ EY + K L+ ++ G S
Sbjct: 110 IKKDPQFQ-EGGKFSFKLYAETLERAGLTPVEYEGYLKKSLTIRKLLRFIKSGTYLSPKE 168
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L+ +R S +LN V P+ L +++ + + + P KR
Sbjct: 169 LEFQERILSARFSGRAYLLNASSVKLDYKPTLEELKEFYSRNAEKFSLPSVKRFR 223
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 86/272 (31%), Gaps = 14/272 (5%)
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + + + E + ++ + E + +
Sbjct: 178 ARFSGRAYLLNASSVKLDYKPTLEELKEFYSRNAEKFSLPSVKRFRVWETADK-----GK 232
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD--GSYMWVQIKESI 472
+ K K E ++ +E+L + L L G Y + ++ES
Sbjct: 233 AQSIYRELKRGKVPEGGSLFKEEELPSALKDTVRNLKVTEPFTLTKVKGKYYVIYLEESS 292
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
P R + EE D++K K AE V KA +L SK + + +++
Sbjct: 293 PGRVKSFEEARKDIEKLLVEEKKAELVEKKARELRELLSKGARVDHKHVRFDNSTVEEFI 352
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
+ K G + + VFS + + G + V + + ++ + +
Sbjct: 353 TL------FKIQGDEVLRLVFSEDR-VFGPYRTAGGYAVVYIEKRSFDSKNIKNRGQLED 405
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
L L+ L + + +++ ++
Sbjct: 406 SLLNAKLDSLVSLFAEKLAEEADIQINEEYLK 437
>gi|289549224|ref|YP_003474212.1| hypothetical protein Thal_1456 [Thermocrinis albus DSM 14484]
gi|289182841|gb|ADC90085.1| hypothetical protein Thal_1456 [Thermocrinis albus DSM 14484]
Length = 444
Score = 103 bits (256), Expect = 9e-20, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 78/233 (33%), Gaps = 15/233 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFI 57
M I++ + + + V+ F +W + V V + +
Sbjct: 1 MFSFIQRHRK--FLVVTVSVVSFAFFLWLFLAGSVQDILRGKRACVAVVNGTCISLRDYR 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + +++LD+L+ L Q ++G A V
Sbjct: 59 MELLPYSQFLK---------NEEMEGMIKEQVLDSLIVRELLYQKALEMGFVASDEEVID 109
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + FS + L R + +Y ++ KMLS +V + +
Sbjct: 110 TIKSDPTFQ-EGGVFSASKYREVLERNNLEPAQYEEYLKKMLSIQKLVSFISNSVYITEK 168
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
Y + ++ V +P++A L ++ ++++ ++ PE +
Sbjct: 169 EKQANLLPYTTLLTGKLYLITPDSVKISYEPTDAELLNYYHQHREEFKRPEKR 221
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/265 (14%), Positives = 84/265 (31%), Gaps = 14/265 (5%)
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
+ + T A R E + ++ ++++ + K
Sbjct: 186 YLITPDSVKISYEPTDAELLNYYHQHREEFKRPEKRVVRLWETPQRDEALNIYNQLKSSK 245
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH---TVALPDGSYMWVQIKESIPARDRKLE 480
G +P +E L V + TV ++ + + P+
Sbjct: 246 VPTGYREVILPQQEAELSPVLRAEITRLSSKEPYTVTKDGDKFVVLWLYSWEPSGYEDFN 305
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
V +K+ K E++ A + KEGK + I+++ +
Sbjct: 306 NVKDKIKQLLVQQKRLEKLQDVAQSAYKDL-KEGKQID-----YRYLAFSDTPISQLASL 359
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK--FISYLTQMM 598
K D + + S + P Y V K+ + + +K + I + +
Sbjct: 360 MKIPQEDLVKLLVS---KETVFGPYAIAQGYAVLKIESKTTKSLDDKQQKDLIKDILSLK 416
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLI 623
+L+ + LK + +T++ +LI
Sbjct: 417 TDSVLNYYLESLKKRAKITINRDLI 441
>gi|121634931|ref|YP_975176.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
meningitidis FAM18]
gi|120866637|emb|CAM10388.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
meningitidis FAM18]
gi|325132578|gb|EGC55271.1| hypothetical protein NMBM6190_0987 [Neisseria meningitidis M6190]
gi|325138351|gb|EGC60920.1| hypothetical protein NMBES14902_1084 [Neisseria meningitidis
ES14902]
gi|325142491|gb|EGC64895.1| hypothetical protein NMB9615945_0995 [Neisseria meningitidis
961-5945]
gi|325198371|gb|ADY93827.1| conserved hypothetical protein [Neisseria meningitidis G2136]
Length = 512
Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 79/482 (16%), Positives = 167/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISDHSINNAM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL++ + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLPAPVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 36/342 (10%), Positives = 85/342 (24%), Gaps = 6/342 (1%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
+ + + S + F L + +G + D
Sbjct: 49 DHSINNAMQNEQADGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIVDDPNFH 108
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G F + + + ++ + + E RL
Sbjct: 109 DANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAEQLIRLT 168
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + E I + + D K+ +P +L + D K
Sbjct: 169 QVNRTI-RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADK 227
Query: 453 DHTVALPDGSYMWVQIKESIPARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ ++ + E+ V+ + K K + + +L +
Sbjct: 228 QTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAF 287
Query: 512 KEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIEN 567
+ + KN G + T ++R D + + I+ VFS + N
Sbjct: 288 NHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTIN 347
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ V + + + + Q + +
Sbjct: 348 SETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAEN 389
>gi|254671966|emb|CBA04388.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
alpha275]
Length = 512
Score = 103 bits (255), Expect = 9e-20, Method: Composition-based stats.
Identities = 74/482 (15%), Positives = 167/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISDHSINNAI 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGGPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY-FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ K +S E++ +E+ + + + EQ + E K +L
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVTDFNKAKEKL 282
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVS-----LADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
++ S ++ + + + D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLPAPVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKNAFEERVARLP 247
Query: 473 PARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN G + T
Sbjct: 248 ANEAKPSFEQEKAAVENELKMKKAVTDFNKAKEKLGDDAFNHPSSLAEAAKNSGLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ VFS + N + V + +
Sbjct: 308 ETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTINSETAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRTEAAKLAEN 389
>gi|315586916|gb|ADU41297.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 35A]
Length = 517
Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 65/477 (13%), Positives = 158/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG VG+ K+
Sbjct: 31 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSGS---AAKVGQIKISQEELA 87
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 88 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 147
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 148 AKEIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 206
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 207 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 262
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 263 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 318
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 319 RSYVALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 377
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
F E K + ++ K ++ K + + +S
Sbjct: 378 QTKDELQDFNEAKSTLKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELS 437
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 438 QEESAKFINTLFNRQEKKGFIAINNKVVLYQITEQNFNHSFSAEESQYMQRLVNNTK 494
Score = 51.0 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/262 (11%), Positives = 79/262 (30%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R +
Sbjct: 270 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYVALKKANA 329
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 330 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQTKDELQ 384
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 385 DFNEAKSTLKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE------- 435
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLT 595
++ I+ +F+ + V++++T E+ +++ L
Sbjct: 436 --LSQEESAKFINTLFNRQEKKGFIAI---NNKVVLYQITEQNFNHSFSAEESQYMQRLV 490
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 491 NNTKTDFFDKALIEELKKRYKI 512
>gi|32266279|ref|NP_860311.1| hypothetical protein HH0780 [Helicobacter hepaticus ATCC 51449]
gi|32262329|gb|AAP77377.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 499
Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 77/514 (14%), Positives = 161/514 (31%), Gaps = 41/514 (7%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGL---SDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++K + V I + + + F+ G+ F ++ V VG + + ++
Sbjct: 1 MQKHKKWLV--ITIWISAIAFIGAGMVNWGSYGFGLNNDK-VARVGAIDIHIPDYQRAYN 57
Query: 62 QELGMISQ--KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ S ++G +++ +A+ +GL + L +V A L F D+GL V EI
Sbjct: 58 EVFNEYSHIPQLGGMLDEAQAKQLGLPQIALQRVVQQAQLLNFAYDLGLSVSDEEVSNEI 117
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ ++ K+ FSH+++ L ++ E+ + K L + + + S+L +
Sbjct: 118 INAKVYVDKEGHFSHEIYKQALKERQMSPSEFEEIIRKSLLIQKIFSVMNLNVSQSSLQI 177
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
E +++ + + P V + + +
Sbjct: 178 PMVSVTPLEIAALEMADSVRDRLMVKSIPVTQVAFSSTDDELKAFWEKNADNWKTPMEFH 237
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
E + + K+ E + S + L+ Q K +
Sbjct: 238 IEYIFVPFNAQSPSEEALNKHYEDFKSDYLDNDGHLMSMEQSREKLIRDVQKL-EAQSLA 296
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLAD-------SIFSLAKKGDFTPVIHGSFGYVIAH 352
E + G + + +A+ G I G+V
Sbjct: 297 KREYRDLKNGSKQGKILTLKDNERFFIKNGVDLVVADMKVAQVGQVLKPIEADEGFVTLK 356
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
+ + K S SF E K + TK E + + + +
Sbjct: 357 LLDKKESVNKSFDEAKSAVKEMYEHTKRKESLVKLAQE---------------SVKNFAG 401
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
D+ +D I K L +VFG D L D + ++ E
Sbjct: 402 TDIGFIDRF--YNGAILTLDINQKMHFLSQVFGSQDKEGYV----LFDDKVVLYRVLE-- 453
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ ++ ++ K +K + + A L
Sbjct: 454 --QSSVPKDKENNITMIAKNIKYGAVLDTLAENL 485
>gi|218768240|ref|YP_002342752.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
meningitidis Z2491]
gi|121052248|emb|CAM08573.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
meningitidis Z2491]
gi|254670088|emb|CBA04992.1| peptidyl-prolyl cis-trans isomerse D [Neisseria meningitidis
alpha153]
gi|325204222|gb|ADY99675.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
Length = 512
Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 79/482 (16%), Positives = 167/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISDHSINNAI 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGGPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL++ + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLPAPVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKNAFEERVARLP 247
Query: 473 PARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN G + T
Sbjct: 248 ANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPSSLAEAAKNSGLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ VFS + N + V + +
Sbjct: 308 ETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTINSETAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRTEAAKLAEN 389
>gi|256819263|ref|YP_003140542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
ochracea DSM 7271]
gi|256580846|gb|ACU91981.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
ochracea DSM 7271]
Length = 705
Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 80/630 (12%), Positives = 201/630 (31%), Gaps = 57/630 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
LE IR S+T + + F+I + FS + + SV + VP +F
Sbjct: 4 LEKIR--SKTVFLIAIIGLALFAFIISDFIGKGRFSNHNPNEIGSVNGEDVPIDAFRQQV 61
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-- 118
+ ++ V+S A + + V L+Q IE +GL + ++
Sbjct: 62 ENAT----RQANGQVSSIEAAKY-----VWEQNVQQILLNQQIEKLGLSVEKDQILAILA 112
Query: 119 ---IARSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYIDHYTKMLSRTDVVGMF 168
+A++P F + F + F + LA + K D + + +
Sbjct: 113 KTPLAQNPQFVNEYGVFDANKFTNYLATLKNTNPQAYAQWKMQEDAIIEDAKQRMYFSLI 172
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP 227
G+ +N + + + Y+ L + + +++ + + +K++ ++
Sbjct: 173 RAGLGVTNTEAEMEYHQEKDLADISYVALQYSSIDDKSVNVTDSEIQDYIKKHEKQFKQE 232
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
Y+ I YI+ + I +++ K PE+ + +
Sbjct: 233 AYRNIQYIVVSEKPSQTDI--------ETEKESLLKLLQPEVVFNSKTNKNDTIAGFAKT 284
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+++K ++ +L S + + ++ + + G
Sbjct: 285 KNIKDFVDRHSDVPYDSTFVNKDNLRSSYADTLFNLPVGKVFGPYEEDGSLKL-----SR 339
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ + + A E + + L + A G +++R
Sbjct: 340 MIAKQPGGAVKASHILIAYTGSQAATPNTTRTKEEAKAKAEELLAQAKAAGADFAQLARE 399
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ G KG V + ++ + V G ++
Sbjct: 400 NSEEPGAVYSAGDLGFFSKGAMVKPLEEF--------AFNNAVGTIGIVETAFGFHVVKV 451
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
++ + + + T + SK ++ ++ K F +I K S
Sbjct: 452 TDKAEAVNIATISRKVD------PSEATINSLFSKVTNFEMKAAQNPKEFANIAKKSELS 505
Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+L + +++ D++ G + +F ++ +G +Y+V ++ +
Sbjct: 506 VLRADNLHKNDDQIIGLGSNRSIVQWLFQKDTKIGDIKKFTSGGNYIVAQLVKQGEEGIS 565
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ ++ ++ ++ LK +
Sbjct: 566 SVQDAAPMVKPILIREKKAAI---LKEKAK 592
Score = 96.9 bits (238), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/561 (10%), Positives = 155/561 (27%), Gaps = 36/561 (6%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G V + A +K L ++ A I+D + + I + +
Sbjct: 173 RAGLGVTNTEAEMEYHQEKDLADISYVALQYSSIDDKSVNVTDSEIQDYIKKH------E 226
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+F + + + + ++EK + D F
Sbjct: 227 KQFKQEAYRN-IQYIVVSEKPSQTDIETEKESLLKLLQPEVVFNSKTNKNDTIAGFAKTK 285
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
D++ ++ + L + N + + +
Sbjct: 286 NIKDFVDRHSDVPYDSTFVNKDNLRSSYADTLFNLPVGKVFGPYEEDGSLKLSRMIAKQP 345
Query: 250 NDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-- 306
++A + T K + Q+ G F QLA E +
Sbjct: 346 GGAVKASHILIAYTGSQAATPNTTRTKEEAKAKAEELLAQAKAAGADFAQLARENSEEPG 405
Query: 307 --LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
S LG FSK + + G ++ +FG+ + V++ + ++
Sbjct: 406 AVYSAGDLGFFSKGAMVKP--LEEFAFNNAVGTIG-IVETAFGFHVVKVTDKAEAVNIAT 462
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
K D + + + + I+++ ++ + +
Sbjct: 463 ISRKVDPSEATINS----LFSKVTNFEMKAAQNPKEFANIAKKSELSVLRADNL-----H 513
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
++ + ++ +F KD + G+Y+ Q+ + +++
Sbjct: 514 KNDDQIIGLGSNRSIVQWLFQKDTKIGDIKKF-TSGGNYIVAQLVKQGEEGISSVQDAAP 572
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
VK K A + KA G + I + + + +
Sbjct: 573 MVKPILIREKKAAILKEKAK---------GNSLEAIASANKTEVKSAANLIMKNPTIIGE 623
Query: 545 GYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
G + + F + YV+ + + + + + ++
Sbjct: 624 GREPKVVGAAFGLKQGQLSKPIDGENAVYVIQLTSATVAPALDNYKTYAETVEKLRTDRA 683
Query: 603 LDSVIAYLKSQYSVTVHDNLI 623
++ L+S ++ + +L
Sbjct: 684 AQGILKSLESTATIKENLSLF 704
>gi|15677110|ref|NP_274262.1| peptidyl-prolyl cis-trans isomerase-related protein [Neisseria
meningitidis MC58]
gi|7226478|gb|AAF41619.1| peptidyl-prolyl cis-trans isomerase-related protein [Neisseria
meningitidis MC58]
gi|316985097|gb|EFV64050.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis H44/76]
gi|325140532|gb|EGC63053.1| hypothetical protein NMBCU385_0927 [Neisseria meningitidis CU385]
gi|325200131|gb|ADY95586.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
Length = 512
Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats.
Identities = 79/482 (16%), Positives = 167/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISDHSINNAI 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGGPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL++ + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLPAPVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKNAFEERVARLP 247
Query: 473 PARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN G + T
Sbjct: 248 ANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPSSLAEAAKNSGLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ VFS + N + V + +
Sbjct: 308 ETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTINSETAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRTEAAKLAEN 389
>gi|194337592|ref|YP_002019386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelodictyon
phaeoclathratiforme BU-1]
gi|194310069|gb|ACF44769.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelodictyon
phaeoclathratiforme BU-1]
Length = 705
Score = 103 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 64/616 (10%), Positives = 158/616 (25%), Gaps = 69/616 (11%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
+ +R + + L + WG+ S + + V + +P+S + +
Sbjct: 4 MSSLRDKT-HIILYTLLAAFLALIVFEWGMDFTGNSGTKQNQAGEVNGKVIPYSQYEEIY 62
Query: 61 KQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
K + G V E + ++ + +V LDQ ++ G+ V +
Sbjct: 63 KAVTENFRRSNPGAEVMPE--NELEFQEQAWNTVVEQTLLDQQLKKFGITVQDQEVVDAL 120
Query: 120 ARSPL-FHGKDNKF--------SHDVFVSRLA--REGINEKEYIDHYTKMLSRTDVVGMF 168
+ F S R + + L ++
Sbjct: 121 GSATNPPQVIRQNFTNPATGAVDRAKLESIRRDPRNKELWLQIEKIVRRELEVNKLLRAL 180
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNYRA 226
+ ++ LD + S +I ++ + ++++++K
Sbjct: 181 QTFVHVTDRELDDIVNRQYSLFSASFIPFPLSFAGPDSNFPVKEEEIKKYYDEHK----- 235
Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
EL ++ K + + + + E +
Sbjct: 236 -------------------------ELLKQFYSRKADFVFFPLIPSSKDSLAVRTELETI 270
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ Q + I+ ++ P K G I
Sbjct: 271 RAEFSASVNDSDYVKVQSDRPAGINKVYSRADFSPAAGDVFFNSPNFKPGTIVGPIADRG 330
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
Y + + I S + + + + +V + + + L GT D +++
Sbjct: 331 EYRLIKIRQISASAPLVARASHILLHFNPASREDVARVSQLSALIFKQLQAGTPFDALAK 390
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + G K + V P S V G ++
Sbjct: 391 KYSADPVSALNGGDIGWFSKERMVP-------QFAAAVFGARPGSVIGPVQTQFGLHII- 442
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ E V ++ + + K F +
Sbjct: 443 KVTGFDTQAALCSEIVRNIRPSTETVDSGRRLATAF------QINATEKGFDKSAASAKL 496
Query: 527 SLLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--- 582
+ T N+ + + ++ F + +E + V ++T
Sbjct: 497 PIGKTGDFNKHMPIPQIGYREAVTTFAFKAKEGDL-SDVLETEKGFYVMRLTGKNDTGYR 555
Query: 583 --PVQEKDKFISYLTQ 596
+ K + + L +
Sbjct: 556 LLDKELKARITAELVR 571
Score = 76.8 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 66/585 (11%), Positives = 147/585 (25%), Gaps = 44/585 (7%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
+F N + + + + ++K + L L +
Sbjct: 131 RQNFTNPATGAVDRAKLESIRRDPRNKELWLQIEKIVRRELEVNKLLR--ALQTFVHVTD 188
Query: 113 GRVWGEIARS------------PLFHGKDNKFS-HDVFVSRLAREGINEKEYIDHYTKML 159
+ + R F G D+ F + + + E +
Sbjct: 189 RELDDIVNRQYSLFSASFIPFPLSFAGPDSNFPVKEEEIKKYYDEHKELLKQFYSRKADF 248
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
++ + L F DY+ + + I +
Sbjct: 249 VFFPLIPSSKDSLAVRTELETIRAEFSASVNDSDYVKVQSDRPAGINKVYSRADFSPAAG 308
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ + I+I A + V
Sbjct: 309 DVFFNSPNFKPGTIVGPIADRGEYRLIKIRQISASAPLVARASHILLHFNPASREDVARV 368
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKK 335
+ + F+ L+ G F LA++ + +G FSKE + + A+
Sbjct: 369 SQLSALIFKQLQAGTPFDALAKKYSADPVSALNGGDIGWFSKERMVPQ--FAAAVFGARP 426
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
G + FG I V+ + +I +R + + +
Sbjct: 427 GSVIGPVQTQFGLHIIKVTGFDTQ-----AALCSEIVRNIRPSTETVDSGRRLATAFQIN 481
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
A D+ + K+ + + + K
Sbjct: 482 ATEKGFDKSAASAKLPIGKTGDFNK-------HMPIPQIGYREAVTTFAFKAKEGDLSDV 534
Query: 456 VALPDGSYMWVQIKESIPARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
+ G Y+ +++ R +E+ + + K + K + G
Sbjct: 535 LETEKGFYV-MRLTGKNDTGYRLLDKELKARITAELVRKKKEALLEKKLAAMAA---VPG 590
Query: 515 KNFRDIGKN-LGASLLTTNQINRMDNENKFFGYD-GISQVFSGPVEMVKCFPIENGLSYV 572
I + G ++ + I + +G D + + S V P++
Sbjct: 591 VTLEKIAASHAGVKVVVADSIRWSNGAIPGYGVDRSLVEGMSALVPGKLSAPLKTSDGAA 650
Query: 573 VFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ +++ V EK L + + L IA L+ +
Sbjct: 651 LVLLSSKTVPAGLNRKAEKSAIAPQLLRAKQEQLFAEYIASLRKK 695
>gi|15611978|ref|NP_223629.1| hypothetical protein jhp0911 [Helicobacter pylori J99]
gi|4155485|gb|AAD06486.1| putative [Helicobacter pylori J99]
Length = 487
Score = 103 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 68/477 (14%), Positives = 161/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L F D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTNVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E ++ +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYENHRKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D Q +
Sbjct: 233 YFDASLEK----TDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLNMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++G + + + F K P + + K + G+++ + +
Sbjct: 289 RSYIALKKGNAQNYTTQD-FEKNNSPYTAEITQKLTALKPLEVLKPEPFKDGFIVVQLVS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + +S
Sbjct: 348 QIKDELQNFDEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H + + YM + +
Sbjct: 408 QEESAKFINTLFNRQEKKGFVTIGNKVVLYQITEQNFNHPFSAEENQYMQRLVNNTK 464
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 33/257 (12%), Positives = 83/257 (32%), Gaps = 22/257 (8%)
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
+E + + + + + +E + R I ++
Sbjct: 245 ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLNMQKANEKALRSYIALKKGNAQNYTT 304
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
+D + Q L + + ++ VQ+ I + +E
Sbjct: 305 QDFEKNNSPYTAEITQKLTALKPLEVLK-----PEPFKDGFIVVQLVSQIKDELQNFDEA 359
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+ +K KT + + A + + ++ +GK+ + N G ++ N+
Sbjct: 360 KSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE---------LNQ 408
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLTQMMNK 600
I+ +F+ + G V++++T E+++++ L
Sbjct: 409 EESAKFINTLFNRQEKKGFVTI---GNKVVLYQITEQNFNHPFSAEENQYMQRLVNNTKT 465
Query: 601 DLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 466 DFFDKALIEELKKRYKI 482
>gi|222839633|gb|EEE77956.1| predicted protein [Populus trichocarpa]
Length = 390
Score = 103 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 73/395 (18%), Positives = 135/395 (34%), Gaps = 42/395 (10%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA-------- 300
S D++++ Y +N E+ PE R ++ K+A A Q K K LA
Sbjct: 8 SEDDVRSYYNQNAERLAGPEERRASHILINASKDAPAAEQEKAKAKADELLAELRKDPKR 67
Query: 301 ---------EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
++ G + S LG F + + + K GD + V+H FGY I
Sbjct: 68 FAELAKANSQDGGSAASGGDLGYFGRGAMVKPFEDAAFGM--KVGDISDVVHSDFGYHII 125
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG-TSMDEISRREKI 410
+ +IK SF++++ + +++ +A K E + + S+ ++ + K+
Sbjct: 126 SLEDIKKPKAPSFEQMRPKLEAELKQQQAQRKFAELAEGFSNAVYEQSDSLQPVAEKFKL 185
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT--VALPDGSYMWVQI 468
V G V + L +F D +K +T V L + ++
Sbjct: 186 TVQKADHVTR----QPGPNVKGPLANPRFLEALFSSDSLNNKRNTDAVELGSNQLVAGRV 241
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
E PAR + EV ++ + K+AE + + + K A L
Sbjct: 242 VEYTPARTLPMAEVGDKLRTLYVAQKSAELAKADGEAKLAAWK---------AKPDAAQL 292
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQE 586
I+R E + + P + + + Y V K+ P +
Sbjct: 293 PAAKVISRDQPE--GLSREVVDAALRAPTAQLPAWTGVDMGAQGYAVVKINRIVERPADD 350
Query: 587 KDKFISY---LTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + LK Q V +
Sbjct: 351 AQAAAAQKQDFLRSSAVAEAMAYYELLKKQLKVQI 385
>gi|171463604|ref|YP_001797717.1| hypothetical protein Pnec_0905 [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193142|gb|ACB44103.1| conserved hypothetical protein [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 482
Score = 103 bits (254), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/237 (17%), Positives = 90/237 (37%), Gaps = 10/237 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + +RK R + + ++++ F +G+S + + +V V + + +
Sbjct: 1 MFDTVRKHQR-ILQFVLMLLIVPSFAFFGVSSYSSFLDKETDLVKVNGKSITAQEVDMAA 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
K++ + + + A+S+ + IL+ L+ L + D+ L+ + +
Sbjct: 60 KRQAERVGGNV------QIAQSLQFRQAILNELLQQRILGFAVSDLRLQVGKEALVKSLQ 113
Query: 121 RSP---LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P + +D F F LA G+NE ++ L + +V S
Sbjct: 114 NIPQIRALYKQDGSFDDARFKQLLASNGLNEGQFYAGQAFDLKISQLVNSVARTEIGSPK 173
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
L + Y R V + + + + +PS L ++ + +PEY + Y
Sbjct: 174 LSEIVSTLYEMERQVQIMPFDAKDYLSKVNPSQEELQAFYAANSKLFESPEYVDVEY 230
>gi|302036376|ref|YP_003796698.1| putative peptidyl-prolyl cis-trans isomerase D (fragment)
[Candidatus Nitrospira defluvii]
gi|300604440|emb|CBK40772.1| putative Peptidyl-prolyl cis-trans isomerase D (fragment)
[Candidatus Nitrospira defluvii]
Length = 232
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 9/183 (4%)
Query: 1 MLEIIRKASR--TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
M++++R+A+ W K + +L + F+I + F S + V SVG Q VP +
Sbjct: 1 MIKLLREAAHDYPWFLKSIMGLLALAFVIT-MGWWGFGQSSGNVVASVGDQVVPLDEYRR 59
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+++ K + L + +L+ L+ +++GL +
Sbjct: 60 AYENTYRFYKDKGQ-----NDIKDEFLKQFVLEQLIDNRMWLHVAKEMGLTVSDEDLRKA 114
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I + F K+ F D + L+ + + K + + + + +
Sbjct: 115 IMQRTEFQ-KNGSFDPDAYKRLLSANRLTPASFEAMEAKDILTNKARLVIMDAVALTPAE 173
Query: 179 LDQ 181
+
Sbjct: 174 YTE 176
>gi|325134515|gb|EGC57160.1| hypothetical protein NMBM13399_0963 [Neisseria meningitidis M13399]
Length = 512
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 78/482 (16%), Positives = 166/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISDHSINNAI 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGGPS---------RDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + + + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNSVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL++ + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLPAPVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPKAVKLEYVALNLKDFADKQTVSETEVKNAFEERVARLP 247
Query: 473 PARDRK-LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
+ E+ V+ + K K + + +L + + + KN G + T
Sbjct: 248 ANEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPSSLAEAAKNSGLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ VFS + N + V + +
Sbjct: 308 ETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTINSETAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRTEAAKLAEN 389
>gi|255533907|ref|YP_003094279.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus
DSM 2366]
gi|255346891|gb|ACU06217.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus
DSM 2366]
Length = 698
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 73/711 (10%), Positives = 191/711 (26%), Gaps = 112/711 (15%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-----GSSTVVSVGRQKVP---- 52
+ +R + I + + + + + DA+ V SV +++
Sbjct: 4 MTFLRNRA----GYILVGAIGFAIVAFLVGDAINVGKPFWAESQKVVGSVDGEEISIDQF 59
Query: 53 -------FSSFINSW----KQELGMIS------------------QKIGFVVNSERARSV 83
+ F + ++ ++ ++G ++S+ +
Sbjct: 60 GPKVDQSLAQFKQQYGGSGNAQMQAMAVDNVWQGEIASILLGKEYNRLGLTISSDELFDL 119
Query: 84 GL---------------------DKKILDNLVSG----------ATLDQFIEDIGLE--- 109
++L +L L IE L+
Sbjct: 120 LQGKNPSPLIVQYFGNPQTGEVNRAEVLASLKQQDKNPQLEKQWELLQNEIEKQALQKKY 179
Query: 110 ---ADHGRVWGEIARSPLFHGKDN--KFSHDVFVS------RLAREGINEKEYIDHYTKM 158
+ + + + ++ F + + + + +Y + K
Sbjct: 180 ANLISNSIYVTTLEANDDYQNRNKLASFKYTLLDYAAVPDATVKPTESDYSDYYNENKKR 239
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
F + + + + + + A ++ V +
Sbjct: 240 FENPSETRSFEYVAFSVSPTKEDSAAVKTQVDKLAADFRTAANDSLFAAVNSDVKVPYAY 299
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
K + + + + S ++ + ++
Sbjct: 300 MSKGKLDPAVDSVVFNLPAGSYYGPRFSGNSYKLIKVIDTRFSPDSVKASHILLDPSKMG 359
Query: 279 NQKEADEAFQSLK----KGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFS 331
+A + SLK G F LA++ LG+FS+ + D+ F+
Sbjct: 360 GADKAKKLADSLKTLVQNGASFAALAKQYSIDGSKDKGGELGTFSRGQMV-PVFEDAAFN 418
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
V+ FG + + S V +A + +S K ++ +
Sbjct: 419 GKAGDL--KVVTSQFGVHLIKIEKQIGSSKV------AKLAYIEKGLASSNKTRDAAYKK 470
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
+ + + + + D + QL+ + D
Sbjct: 471 ASAFLNEVKSNNFAELAQKKGYTVGVADRVT--PTQGFAPGLDSPRQLIRDAYATDKGEI 528
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ D +Y+ ++ + P LE+V +++ +T A+ ++ K N+ +
Sbjct: 529 LKEVYQM-DNAYVVARVTDIKPKGTLSLEDVKKEIEPMVRTAVKAKMLTEKMNKAL---- 583
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGL 569
+ N + + LG ++ I + + + VF +
Sbjct: 584 QGSANLAQVAQKLGKTVAPVENIVFANPIIPGAAQENKLVGSVFGSQPGKLSKAIDGTAG 643
Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
Y S+ P+ K + Q + L + L+ + + +
Sbjct: 644 VYAFTVDGFSQPAPLANTYKQKEAMMQAGGQRALGAAFQALQDKSKIKDNR 694
>gi|325128356|gb|EGC51240.1| hypothetical protein NMXN1568_0938 [Neisseria meningitidis N1568]
Length = 512
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 75/482 (15%), Positives = 169/482 (35%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISDHSINNAI 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G ++ + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QADGGGLS---------RDAVFQSLLQRAYLKQGSKLMGISVSSEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KF H + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFDHALLNRYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPE-IRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ K +S E++ +E+ + + E + EQ + E K +L
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPTNEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVS-----LADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
++ S ++ + + + D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + A K + A ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFAEAKDAVRQAYIRTEAAKLAENKAKDVLTQLNGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLIGLPAPVIVEVQAVTP 462
Query: 474 AR 475
Sbjct: 463 PD 464
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/202 (11%), Positives = 56/202 (27%), Gaps = 5/202 (2%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES- 471
+ + D K+ +P +L + D K + ++
Sbjct: 188 VKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADKQTVSETEVKNAFEERVARLP 247
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT- 530
E+ V+ + K K + + +L + + + KN G + T
Sbjct: 248 TNEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAFNHPSSLAEAAKNSGLKVETQ 307
Query: 531 TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
++R D + + I+ VFS + N + V + +
Sbjct: 308 ETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTINSETAWVVRAKEVREEKTLPF 367
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
+ + Q + +
Sbjct: 368 AEAKDAVRQAYIRTEAAKLAEN 389
>gi|296313658|ref|ZP_06863599.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
polysaccharea ATCC 43768]
gi|296839799|gb|EFH23737.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
polysaccharea ATCC 43768]
Length = 512
Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats.
Identities = 80/482 (16%), Positives = 164/482 (34%), Gaps = 25/482 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S GS +V VG +K+ S +
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGSDYIVQVGDEKISDHSINVTM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E Q G + + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE-----QAAGGSPS---------RDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH KFSH + L++ ++E ++++ + ++V + G+ S+ +
Sbjct: 103 DDPNFHDAGGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVSDTQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q + NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLVKLTQVNRTIRSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ YE+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAYEERMARLPAEGEKPSFEKEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A SL + + S K D L D+ S + V +
Sbjct: 283 GDDAFNHPSSLDEAAKNSGLKVETQDTWLSRQDTQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + ++ K++ + + K + ++
Sbjct: 343 VLTINSETAWVVRAKEVREEKTLPFEEAKDAVRQAYIRAEATKLAENKAKETLAQLSGGK 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKESIP 473
V ++ V G + A + + K V L + V+++ P
Sbjct: 403 AVDVKWSEVSVLGAQQARQSMPPESYTELLKAKPANGKPAYVRLTGLPAPVIVEVQAITP 462
Query: 474 AR 475
Sbjct: 463 PE 464
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/362 (10%), Positives = 95/362 (26%), Gaps = 14/362 (3%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
+ + + A S + F L + +G + + D
Sbjct: 49 DHSINVTMQNEQAAGGSPSRDAVFQSLLQRAYLKQGAKLMGISVSQEQIKQIIVDDPNFH 108
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G F+ + + + ++ + S+ E +L
Sbjct: 109 DAGGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVNLVQNGVLVSDTQAEQLVKLT 168
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + E I + + D K+ +P +L + D K
Sbjct: 169 QVNRTI-RSHTFNPDEFIAQVKVSEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADK 227
Query: 453 DHTVALPDGSYMWVQIKES-IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ ++ E+ V+ + K K + + +L +
Sbjct: 228 QTVSETEVKNAYEERMARLPAEGEKPSFEKEKAAVENELKMKKAVADFNKAKEKLGDDAF 287
Query: 512 KEGKNFRDIGKNLGASLLTTN-QINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIEN 567
+ + KN G + T + ++R D + + I+ VFS + N
Sbjct: 288 NHPSSLDEAAKNSGLKVETQDTWLSRQDTQMSGMPENLINAVFSDDVLKKKHNSEVLTIN 347
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ V + + ++ + Q + + ++ + +
Sbjct: 348 SETAWVVRAKEVREEKTLPFEEAKDAVRQAYIRAEATKLAE---NKAK-----ETLAQLS 399
Query: 628 DG 629
G
Sbjct: 400 GG 401
>gi|15606037|ref|NP_213414.1| hypothetical protein aq_592 [Aquifex aeolicus VF5]
gi|2983223|gb|AAC06821.1| hypothetical protein aq_592 [Aquifex aeolicus VF5]
Length = 437
Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/211 (20%), Positives = 78/211 (36%), Gaps = 14/211 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW--GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
M +I+K R +A I + + + FL W +SD ++G+ V +VG + + +
Sbjct: 1 MFGLIQKHKR--IAVIIVTLASLSFLFWMFSVSDVKQMLTGNPCVATVGDECITLREYRF 58
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ + + + L++L++ L +++G V
Sbjct: 59 ELLKYSNFLQ---------DERTEKLARRVALNSLITKEVLYLKAKELGWYVSDEEVVEV 109
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I F + KFS + + L R G+ EY + K L V+ G+
Sbjct: 110 IKNDENFK-EKGKFSVEKYRETLNRFGLTPAEYEEIVRKSLMAQRVLNFLREGVYVLPDE 168
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
LD KRFY ++ V +PS
Sbjct: 169 LDIQKRFYSLRVEGKLYLIKPSDVKVDYEPS 199
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/197 (15%), Positives = 66/197 (33%), Gaps = 8/197 (4%)
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
+ + + ++ V + + Y+ + + LEEV +
Sbjct: 246 PSGYTEFNENLPPKVKEAVKELNQENRIKVVRVGENYYLLYYKGKENAGY-KPLEEVKEE 304
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
+KK+ K E++ A ++ + + ASL +I ++
Sbjct: 305 IKKELVAKKQREKLKEFAQEVFKNLKEGKEVGVKPLAFSSASLEEIQRILMVEQ------ 358
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605
D ++ VF ++ +P G +V K + ++ + L DL
Sbjct: 359 KDLLNLVFG-KEKVYGPYPSLAGYGILVVKNRKFEELKPEQVKEIERELKDNKFNDLAGL 417
Query: 606 VIAYLKSQYSVTVHDNL 622
+ L +Y V V++ L
Sbjct: 418 FVEKLIKEYGVKVNEQL 434
>gi|149277612|ref|ZP_01883753.1| peptidylprolyl cis-trans isomerase [Pedobacter sp. BAL39]
gi|149231845|gb|EDM37223.1| peptidylprolyl cis-trans isomerase [Pedobacter sp. BAL39]
Length = 695
Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 69/703 (9%), Positives = 175/703 (24%), Gaps = 96/703 (13%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSF 56
+ +R + I + + + + + DA+ V S+ + + F
Sbjct: 1 MTFLRNRA----GYILIGAIGFAIVAFLVGDAINVGKPFWAESQKVVGSIDGEDINIDEF 56
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+Q L Q+ G N + + ++ + V+ L + +GL ++
Sbjct: 57 GPKVEQSLAQFKQQYGGSGNEQMSAMAV--DQVWNGEVANVLLGKEYSRLGLNVSGDELF 114
Query: 117 GEIAR-------SPLFHG-KDNKFSHDVFVSRLAREGINEKEYIDHY------TKMLSRT 162
+ F + + + ++ L ++ N + K +
Sbjct: 115 DLLQGKNPSPLIVQYFGNPQTGEVNRAEVLNSLKQQSKNPQLKQQWDLLQTEIEKQALQQ 174
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYK 221
+ + + L + + + + Y+ L+ +P P+ + + ++ + K
Sbjct: 175 KYANLIRSSVYVTTLEANDEYQNRNKLANFRYVGLDYTSIPDANVKPTESDFSDFYNENK 234
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ P R + + ++A+ EK + + + L
Sbjct: 235 QRFNNPTETRSFEYVSFNISPT---AADSAAIKAQVEKLAADFKAAPSDS---LFAALNS 288
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ + + KGK + + G + + +
Sbjct: 289 DVKVPYTYVTKGKLDPAVDSAVFNLPAGSYYGPVLSGNSYKLVKVADTRFSPDSVKASHI 348
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ + + + + + A + + +
Sbjct: 349 LIDAAKLGGVDKATKLADSLKTLVQNGANFATLAAQYSVDGSKDKGGELGTFSRGQMVAE 408
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
E + + G + E K L + P +K A
Sbjct: 409 FENAAFNGKAGDLKVVTSQFGVHLIKIEKQVGSSKVVKLAYIEKSLAPSNKTKDAAYKKA 468
Query: 462 SYMWVQIKESI-------------------------PARDRKLEEVLTD----------- 485
S ++K++ P + +
Sbjct: 469 SNFLAEVKDNNFAELAQKLGYTVGVADKITPTQGFAPGLANPRKLIKDAYAADKGDVLKE 528
Query: 486 --------VKKDWKTVKTAEEV---------------SSKANQLVLEYSKE---GKNFRD 519
V VK + + KA QL + +K
Sbjct: 529 IYAMDNAFVIARVTAVKAKGLLSLEDVKKDITPMVINAVKAKQLTEKINKALQGASTIDQ 588
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
+ + LG + I + + + +F + YV
Sbjct: 589 VAQKLGKPATSVPNIVFANPIIPGAAQENKLVGAIFGSAKGKLSKPVDGQQGVYVFVVDG 648
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
S P+ K + Q + L S L+ + + +
Sbjct: 649 FSNPAPLANTYKQKEAMMQASGQRTLGSAFQALQDKADIKDNR 691
>gi|198275842|ref|ZP_03208373.1| hypothetical protein BACPLE_02017 [Bacteroides plebeius DSM 17135]
gi|198271471|gb|EDY95741.1| hypothetical protein BACPLE_02017 [Bacteroides plebeius DSM 17135]
Length = 712
Score = 102 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 58/603 (9%), Positives = 171/603 (28%), Gaps = 24/603 (3%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F+ L G V V + + +
Sbjct: 4 LQKIR--SKGPLLVIVIGLALFAFIAGDAWKVLQPHQGKQDVGEVNGEVLSAQDYQKMVD 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ +I G + + + ++ + V+ + + E +GL+ + I +
Sbjct: 62 ELSEVIKLTNGLN-SLTEDQLNNVKDQVWQSYVNNKLIAEQAEKLGLKVTDAEIQSIIDQ 120
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
F + D D + M + Q
Sbjct: 121 GTHPLLMQTPF------------RNPQTGMFDKDMLKKFLVDYANLNASQMPAQYVEYYQ 168
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+++ + + + N R + + +
Sbjct: 169 KMGAFWQFVEKTLAQSTLAEKYQNLVAKSLISNPVAAEDAFNSRTEQSDLLLAGVPYSSI 228
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
+ I++S+ E++ Y + KE++ + + + K K+ + +
Sbjct: 229 NDSTIQVSDSEIKDRYNEKKEQFKQLVETRD--IRYIDVKVVPSDADRKAVEKEVTEYSN 286
Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
+ + +D S + S S+ + + + V N
Sbjct: 287 QLASTTADFGTFVRSTGSSVNYSDVPVSKSVFPADVASRLDSTNVNEVYGPYYNQTDDSF 346
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
+F+ + K + + + + ++ + + + V+ A
Sbjct: 347 NAFKLLAKVSSPDSIQFRQIQVYADTEEKTKTLADSIYNALKGGADFAAVAKIYGQTGEA 406
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
+ + F + P+++ + + + + + + K+
Sbjct: 407 TWVNAQSWEGSELDADNSKFINTLLNQPVNELANLNMGQANLILQVMNKKSMQTKYKVAV 466
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
V +V+ + +T +K +Q V + + + + G +L+ ++ ++
Sbjct: 467 VKREVEF---SKETYNAAYNKFSQFVAQ-NTTIDSMVKNAEESGYTLMPRTDLSSAEHYV 522
Query: 542 KFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
+ + +F+ V + +V + ++ + L +
Sbjct: 523 GGVRSTREALKWIFAAKPGEVSPLYECGENDHLMVVALDKIHEAGYRDINSVAEMLRAEI 582
Query: 599 NKD 601
+D
Sbjct: 583 RRD 585
>gi|322380902|ref|ZP_08054980.1| peptidylprolyl isomerase [Helicobacter suis HS5]
gi|321146670|gb|EFX41492.1| peptidylprolyl isomerase [Helicobacter suis HS5]
Length = 481
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/396 (12%), Positives = 131/396 (33%), Gaps = 23/396 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL---SDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ ++K + V I + + F+ G+ FS++ + V VGR +
Sbjct: 1 MISWMQKHKKYLVVTI--WISTIAFVAAGMIGWGQYSFSMANGN-VAKVGRVLISEEELD 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ L + SQ I ++ + +++GL+ L L++ A L D+GL V
Sbjct: 58 REHRRLLDIYSQSIPNFKDLSEKEVKALGLEHNALTLLINQALLKNLALDLGLGVSGSEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI +S F + + F ++ L + + L +
Sbjct: 118 IAEIQKSTAFQNEGH-FDEALYKKILQENRYRPSAFEEGIKNALLLQKI------SALFP 170
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + + + V P + L ++ ++K+ Y+ P ++
Sbjct: 171 QAITPLEEEAFLWPLRLQDQVRIEVLEPKEVVVTQQALRDYYNQHKNTYKKPPSYTLAAS 230
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ E + + ++ + ++ + ++A
Sbjct: 231 HITDTDIEPAKQEQLQAYYEKNKQVYTLQGKVQDFMQVKIKVSHDYLQEKARDL------ 284
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
L + + + +P + + G+ G+++ + +
Sbjct: 285 --ALQKYLALKNNTFKPATEVITKLPYPAEIATKIETMHPGEVLKPQKYKDGWLVVKLVS 342
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+ SF+E K+++ + + + +K++ +
Sbjct: 343 KQTDQLQSFEEAKEEVRIAVVEQEQRKWLKQEASKQ 378
>gi|208434878|ref|YP_002266544.1| peptidyl-prolylcis-transisomerase D [Helicobacter pylori G27]
gi|208432807|gb|ACI27678.1| peptidyl-prolylcis-transisomerase D [Helicobacter pylori G27]
Length = 505
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 66/477 (13%), Positives = 160/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 19 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 75
Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 76 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 135
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 136 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPL 194
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 195 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 250
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 251 YFDAGLEK----TDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 306
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + F + P + + K + G+++ + +
Sbjct: 307 RSYIALKKANVQNYTTQD-FEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLIS 365
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + +S
Sbjct: 366 QIKDELQNFDEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELN 425
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 426 QEESAKFINTLFNRQEKKGFITIGNKVVLYQITEQNFNHSFSAEESQYMQRLVNSTK 482
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 33/257 (12%), Positives = 83/257 (32%), Gaps = 22/257 (8%)
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
+E + + + + + +E + R I + ++
Sbjct: 263 ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANVQNYTT 322
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
+D + Q L + + ++ VQ+ I + +E
Sbjct: 323 QDFEENNSPYTAEITQKLTALKPLEILK-----PEPFKDGFIVVQLISQIKDELQNFDEA 377
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+ +K KT + + A + + ++ +GK+ + N G ++ N+
Sbjct: 378 KSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE---------LNQ 426
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLTQMMNK 600
I+ +F+ + G V++++T E+ +++ L
Sbjct: 427 EESAKFINTLFNRQEKKGFITI---GNKVVLYQITEQNFNHSFSAEESQYMQRLVNSTKT 483
Query: 601 DLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 484 DFFDKALIEELKKRYKI 500
>gi|322378577|ref|ZP_08053017.1| conserved hypothetical secreted protein [Helicobacter suis HS1]
gi|321148985|gb|EFX43445.1| conserved hypothetical secreted protein [Helicobacter suis HS1]
Length = 481
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 50/396 (12%), Positives = 131/396 (33%), Gaps = 23/396 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL---SDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ ++K + V I + + F+ G+ FS++ + V VGR +
Sbjct: 1 MISWMQKHKKYLVVTI--WISTIAFVAAGMIGWGQYSFSMANGN-VAKVGRVLISEEELD 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
++ L + SQ I ++ + +++GL+ L L++ A L D+GL V
Sbjct: 58 REHRRLLDIYSQSIPNFKDLSEKEVKALGLEHNALTLLINQALLKNLALDLGLGVSGSEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI +S F + + F ++ L + + L +
Sbjct: 118 IAEIQKSTAFQNEGH-FDEALYKKILQENRYRPSAFEEGIKNALLLQKI------SALFP 170
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + + + V P + L ++ ++K+ Y+ P ++
Sbjct: 171 QAITPLEEEAFLWPLRLQDQVRIEVLEPKEVVVTQQALRDYYNQHKNTYKKPPSYTLAAS 230
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ E + + ++ + ++ + ++A
Sbjct: 231 HITDTDIEPAKQEQLQAYYEKNKQVYTLQGKVQDFMQVKIKVSHDYFQEKARDL------ 284
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
L + + + +P + + G+ G+++ + +
Sbjct: 285 --ALQKYLALKNNTFKPATEVITKLPYPAEIATKIETMHPGEVLKPQKYKDGWLVVKLVS 342
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+ SF+E K+++ + + + +K++ +
Sbjct: 343 KQTDQLQSFEEAKEEVRIAVVEQEQRKWLKQEASKQ 378
>gi|255534296|ref|YP_003094667.1| Peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae bacterium
3519-10]
gi|255340492|gb|ACU06605.1| Peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae bacterium
3519-10]
Length = 716
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 76/609 (12%), Positives = 169/609 (27%), Gaps = 32/609 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L IR R W+ + V + F++ S + V +++ + +
Sbjct: 4 LGQIRN--RPWLLMGIIAVAMLAFVVNPDSLEQLFGAKPGVYGKVNGEEITKEEYDDQLF 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + GLD++ +V + Q + +GL W ++
Sbjct: 62 --------MLQQQAQQQGQPATGLDEQAWQMMVQSKLIKQQFDKMGLTLTEDMFWNQLQF 113
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P+F F A+ +E ++ + +V +
Sbjct: 114 DPMFAQNQENFD--------AKGNFKGQEIKKQIAELQTSGNVEMYNNWLRTRRTIEYRM 165
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
R F N S + + + ++Y +++ +
Sbjct: 166 MARQVFANVSTGITASKKEAEEMMKQRDQVANIDFVKIDYNSYAQKNPVKVTTQDLADYI 225
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
K+ I D + SP+ V Q K+ +
Sbjct: 226 KKHPILFKRDASRNIGLVYFPAAASPQDEAVTQAEINKLFAQGTEMSGGKENFQNTTNDS 285
Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
SD+ + A G YV++ + + KPS +
Sbjct: 286 MFVSLNSDLPFNPQYFSAEQLPVSIKDKVAAASVGTTFGPYKEQNFYVVSKLLDKKPSDS 345
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
+ I + +A + ++ ++ + + ++ + D
Sbjct: 346 TLSRH----ILVSYKGNQAGGNETRSKEEAKKLADSIGAVLKSAPQKFTEFLKYSA-DPG 400
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
G P + + + V D Y + I++ +
Sbjct: 401 SAGQGGSVGWTTPATPFVPQYLSFLANNGKGATGVVETDYGYHIINIEDKKTGAMTY--K 458
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYS-KEGKNFRDIGKNLGASLLTTNQINRMDNE 540
V VK + KT EV +KA + + + K +F ++ K +I R +
Sbjct: 459 VANLVKTIKASDKTENEVYTKATRFIQQVQGKSFNDFSNLAKKGNYQFFNPKEIGRFSGQ 518
Query: 541 NKFFG----YDGISQVF--SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
G D I+ F + F ++ +V V + + + +
Sbjct: 519 LPGLGTDKDQDIIAWAFHKKRSKGDTEIFTVDGTGDRIVAYVNGIQDAGTADPEAVRDQI 578
Query: 595 TQMMNKDLL 603
++ +L
Sbjct: 579 EPIIKNKIL 587
Score = 82.2 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/526 (9%), Positives = 133/526 (25%), Gaps = 23/526 (4%)
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ + ++ + I + P+ +D + + A +E K+ ++
Sbjct: 208 YAQKNPVKVTTQDLADYIKKHPILFKRDASRNIGLVYFPAAASPQDEAVTQAEINKLFAQ 267
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ + + + Y V + A + F YK
Sbjct: 268 GTEMSGGKENFQNTTNDSMFVSLNSDLPFNPQYFSAEQLPVSIKDKVAAASVGTTFGPYK 327
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ K + D + E ++ ++ ++ +
Sbjct: 328 EQNFYVVSKLLDKKPSDSTLSRHILVSYKGNQAGGNETRSKEEAKKLADSIGAVLKSAPQ 387
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ E + + + G + S+G + + + K T V
Sbjct: 388 KFTEFLK----------YSADPGSAGQGGSVGWTTPATPFVPQYLSFLANNGKGA--TGV 435
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ +GY I ++ + K T+ K +
Sbjct: 436 VETDYGYHIINIEDKKTGAMTYKVANLVKTIKASDKTENEVYTKATRFIQQVQGKSFNDF 495
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL-PD 460
++++ + + + G + ++ F K +
Sbjct: 496 SNLAKKGNYQFFNPKEIGRFSGQLPGLGTDK---DQDIIAWAFHKKRSKGDTEIFTVDGT 552
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
G + + A E V ++ K A+ + K N + + + I
Sbjct: 553 GDRIVAYVNGIQDAGTADPEAVRDQIEPIIKNKILAKRIVEKIN------TTKASSLDQI 606
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
K G++ ++ F + YV+ K + +
Sbjct: 607 AKAFGSTKMSGQVNMLSPQVAGAMEPKVAGAAFGVAKGKLSMPVEGMTGVYVLVKNSETI 666
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD-NLIQR 625
+ + + ++ +++ L+ + L +
Sbjct: 667 NKQPGDIKQVTQAIAGQNSQQFGQALLKSLQDNADIEDFRIELFNQ 712
>gi|317009631|gb|ADU80211.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori India7]
Length = 487
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 65/477 (13%), Positives = 161/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTRFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYVALKKTNAQNYTTQD-FEENNSPYTAEITQKLATLKSLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + +S
Sbjct: 348 QTKDELQNFDEAKSALKTRLTQEKTLMALQALAKEKLKDFKGKSVGYVSPNFGGTISELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + Y+ + +
Sbjct: 408 QEESAKFINTLFNRQEKKGFIAIGDKVVLYQITEQNFNHSFSAEESQYVQRLVNNTK 464
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/262 (11%), Positives = 81/262 (30%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R +
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYVALKKTNA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLATLKSLEILK-----PEPFKDGFIVVQLISQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFDEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLT 595
N+ I+ +F+ + G V++++T E+ +++ L
Sbjct: 406 --LNQEESAKFINTLFNRQEKKGFIAI---GDKVVLYQITEQNFNHSFSAEESQYVQRLV 460
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 461 NNTKTDFFDKALIEELKKRYKI 482
>gi|315224705|ref|ZP_07866528.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
ochracea F0287]
gi|314945333|gb|EFS97359.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
ochracea F0287]
Length = 705
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 69/593 (11%), Positives = 180/593 (30%), Gaps = 54/593 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
LE IR S+T + + F+I + FS + + SV ++VP +F
Sbjct: 4 LEKIR--SKTVFLIAIIGLALFAFIISDFIGKGRFSNHTPNEIGSVNGEEVPIDAFRQQV 61
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-- 118
+ ++ V+S A + + V L+Q IE +GL + ++
Sbjct: 62 ENAT----RQANGQVSSIEAAKY-----VWEQNVQQILLNQQIEKLGLSVEKDQILAILA 112
Query: 119 ---IARSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYIDHYTKMLSRTDVVGMF 168
+A++P F + F + F + LA + K + + + +
Sbjct: 113 KTPLAQNPQFVNEYGVFDANKFTNYLATLKNTNPQAYAQWKMQEEAIIEDAKQRMYFSLI 172
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP 227
G+ +N + + + Y+ L + +++ + + +K++ ++
Sbjct: 173 RAGLGVTNTEAEMEYHQEKDLADISYVALQYSSIDDKSVKVTDSEIQDYIKKHEKQFKQE 232
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
Y+ I Y + + ++ + + ++ L +
Sbjct: 233 AYRNIQY------------------IVVSEKPSQTDIETEKESLLKLLQPEVVFNSKTNK 274
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G + ++ SD+ S S G
Sbjct: 275 NDTIAGFAKTKNIKDFVDRHSDVPYDSTFVNKDNLRSSYADTLFNLPVGKVFGPYQEDGS 334
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
++ + +P + + A+ + + + +++
Sbjct: 335 LKLSRMIAKQPGGA---VKASHILIAYAGSQAATPNTTRTKEEAKAKAEELLAQAKVAGA 391
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + G F F ++ + V G ++
Sbjct: 392 DFAQLARENSEEPGAVYSAGDLGFFSKGAMVKPFEEFAFNNAVGTIGLVETDFGFHVVKV 451
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
++ + + + T + SK ++ ++ K F ++ K S
Sbjct: 452 TDKAEAVNIATISRKVD------PSEATINSLFSKVTNFEMKAAQNPKEFANVAKKSELS 505
Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+L + +++ D++ G + +F ++ +G +Y+V ++
Sbjct: 506 VLRADNLHKNDDQIIGLGSNRSIVQWLFQKDTKIGDIKKFTSGGNYIVAQLVK 558
Score = 96.5 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/561 (10%), Positives = 154/561 (27%), Gaps = 36/561 (6%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G V + A +K L ++ A I+D ++ + I + +
Sbjct: 173 RAGLGVTNTEAEMEYHQEKDLADISYVALQYSSIDDKSVKVTDSEIQDYIKKH------E 226
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+F + + + + ++EK + D F
Sbjct: 227 KQFKQEAYRN-IQYIVVSEKPSQTDIETEKESLLKLLQPEVVFNSKTNKNDTIAGFAKTK 285
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
D++ ++ + L + N + + +
Sbjct: 286 NIKDFVDRHSDVPYDSTFVNKDNLRSSYADTLFNLPVGKVFGPYQEDGSLKLSRMIAKQP 345
Query: 250 NDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS-- 306
++A + T K + Q+ G F QLA E +
Sbjct: 346 GGAVKASHILIAYAGSQAATPNTTRTKEEAKAKAEELLAQAKVAGADFAQLARENSEEPG 405
Query: 307 --LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
S LG FSK + + + ++ FG+ + V++ + ++
Sbjct: 406 AVYSAGDLGFFSKGAMVKPFEEFAFNNAV---GTIGLVETDFGFHVVKVTDKAEAVNIAT 462
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
K D + + + + ++++ ++ + +
Sbjct: 463 ISRKVDPSEATINS----LFSKVTNFEMKAAQNPKEFANVAKKSELSVLRADNL-----H 513
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
++ + ++ +F KD + G+Y+ Q+ + +++
Sbjct: 514 KNDDQIIGLGSNRSIVQWLFQKDTKIGDIKKF-TSGGNYIVAQLVKQGEEGISSVQDAAP 572
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
VK K A + KA G + I + + + +
Sbjct: 573 MVKPILIREKKAVILKEKAK---------GNSLEAIASANKTEVKSAANLIMKNPTIIGE 623
Query: 545 GYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
G + + F + YV+ + + + + + ++
Sbjct: 624 GREPKVVGAAFGLKQGQLSKPIDGENAVYVIQLTSATVAPALDNYKTYAETVEKLRTDRA 683
Query: 603 LDSVIAYLKSQYSVTVHDNLI 623
++ L+S ++ + +
Sbjct: 684 AQGILKSLESTATIKENLSAF 704
>gi|213963094|ref|ZP_03391352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
sputigena Capno]
gi|213954178|gb|EEB65502.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Capnocytophaga
sputigena Capno]
Length = 705
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 52/559 (9%), Positives = 152/559 (27%), Gaps = 40/559 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G V + A +K L ++ A I+D + G + I + +
Sbjct: 173 RAGLGVTNAEAEMEYHQEKDLADINYVALQYSSIDDKNITVTDGEIQDYIKKH------E 226
Query: 130 NKFSHDVFV--SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
+F + + + + ++ + L + + SN L +
Sbjct: 227 KQFKQEAYRNIQYIVAAEKPSAKDMEAEKQSLLKLLQPEVVYNSKTNSNDTLPGFAKTKN 286
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
VD + + + + ++ +
Sbjct: 287 IKEFVDRNSNVPYDSTF---VNKDNIRSAYADTLYALPVGKVFGPYEEDGNIKLSRMVAK 343
Query: 248 ISNDELQAEYEKNKEKYFSP-EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK- 305
++A + + T K + ++ G F +LA E +
Sbjct: 344 EPAGAVKASHILIAYQGSQAATPNTTRTKEEAKAKAEELLAKAKTAGTDFAELARENSEE 403
Query: 306 ---SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
+ S LG F K + + G+ ++ FG+ + V+ + +
Sbjct: 404 PGAAYSGGDLGFFGKGAMVKP--FEEFAFANPVGNIG-LVETDFGFHVVKVTGKAEAVNI 460
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
+ + + + + I+++ + + +
Sbjct: 461 ATISRAVEPSEATVSE----IFSKVSNFEMKASQNPKEFASIAKKFGLSVLRADNL---- 512
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
++ + ++ +F KD + + + Q+ + +++
Sbjct: 513 -HKNDDQIIGLGSNRAIVQWLFNKDTKVGDIKRFNAGSNN-IVAQLVKQGEEGLSSVQDA 570
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
VK K A + KA G + + I + + + +
Sbjct: 571 APIVKPILIREKKAAILKEKAK---------GNSLQAIASANKTEVKSATGLVMKNPTII 621
Query: 543 FFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
G + + F + YV+ ++ + + + + + +
Sbjct: 622 GEGREPKVVGAAFGLKQGQISKPIDGENAVYVIQLISETIAPAITDYRTQAETVENLRTE 681
Query: 601 DLLDSVIAYLKSQYSVTVH 619
+++ L++ ++ +
Sbjct: 682 RAAQNILKSLENSATIKEN 700
Score = 99.2 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 75/630 (11%), Positives = 188/630 (29%), Gaps = 57/630 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
LE IR S+T + + F+I + FS + + +V + V +F
Sbjct: 4 LEKIR--SKTVFLIAIIGLALFAFIISDFIGKGRFSNHMPNEIGTVNGEDVSIDAFRAQV 61
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-- 118
+ ++ V+S A + + V L+Q IE +GL + ++
Sbjct: 62 ENAT----RQANGQVSSIEAAKY-----VWEQKVQEILLNQQIEKLGLSVEKDQILAILA 112
Query: 119 ---IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM-------LSRTDVVGMF 168
+A++P F + F F S LA E + + +
Sbjct: 113 KTPLAQNPQFVNELGVFDPHKFTSYLATLKSTNPEAYAQWKIQEDAIVEGAKQQMYFSLI 172
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRAP 227
G+ +N + + ++Y+ L + ++ + + +K++ ++
Sbjct: 173 RAGLGVTNAEAEMEYHQEKDLADINYVALQYSSIDDKNITVTDGEIQDYIKKHEKQFKQE 232
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
Y+ I Y + A + + + + + ++ L +
Sbjct: 233 AYRNIQY------------------IVAAEKPSAKDMEAEKQSLLKLLQPEVVYNSKTNS 274
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G + +E S++ S S G
Sbjct: 275 NDTLPGFAKTKNIKEFVDRNSNVPYDSTFVNKDNIRSAYADTLYALPVGKVFGPYEEDGN 334
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
++ + +P+ + + A+ + + + + +
Sbjct: 335 IKLSRMVAKEPAGA---VKASHILIAYQGSQAATPNTTRTKEEAKAKAEELLAKAKTAGT 391
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + G F F +P+ V G ++
Sbjct: 392 DFAELARENSEEPGAAYSGGDLGFFGKGAMVKPFEEFAFANPVGNIGLVETDFGFHVVKV 451
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
++ + + + T E+ SK + ++ S+ K F I K G S
Sbjct: 452 TGKAEAVNIATISRAVE------PSEATVSEIFSKVSNFEMKASQNPKEFASIAKKFGLS 505
Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+L + +++ D++ G + +F+ ++ G + +V ++ +
Sbjct: 506 VLRADNLHKNDDQIIGLGSNRAIVQWLFNKDTKVGDIKRFNAGSNNIVAQLVKQGEEGLS 565
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ ++ ++ ++ LK +
Sbjct: 566 SVQDAAPIVKPILIREKKAAI---LKEKAK 592
>gi|188527796|ref|YP_001910483.1| conserved hypothetical secreted protein [Helicobacter pylori
Shi470]
gi|188144036|gb|ACD48453.1| conserved hypothetical secreted protein [Helicobacter pylori
Shi470]
Length = 517
Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats.
Identities = 65/477 (13%), Positives = 162/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 31 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 87
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 88 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 147
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 148 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 206
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 207 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 262
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q + +
Sbjct: 263 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKVNEKAL 318
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 319 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLVS 377
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + ++
Sbjct: 378 QTKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSMGYVSPNFGGTINELN 437
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 438 QEESAKFINALFNRQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNNTK 494
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/260 (12%), Positives = 78/260 (30%), Gaps = 18/260 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + ++E + R I
Sbjct: 270 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKVNEKALRSYIALKKANA 329
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 330 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLVSQTKDELQ 384
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 385 NFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSMGYVSPNFGGTINE------- 435
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
N+ I+ +F+ E I N + N E+ +++ L
Sbjct: 436 --LNQEESAKFINALFN-RQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNN 492
Query: 598 MNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 493 TKTDFFDKALIEELKKRYKI 512
>gi|150026459|ref|YP_001297285.1| hypothetical protein FP2430 [Flavobacterium psychrophilum JIP02/86]
gi|149773000|emb|CAL44484.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 701
Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats.
Identities = 83/623 (13%), Positives = 170/623 (27%), Gaps = 58/623 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L IR+ ++++ + + F+I L + + ++ + F F
Sbjct: 4 LSKIRQ--KSFLVIAVVGIALFAFIIGALIENGGFGKTARNAGTINGVDISFEEFREKVD 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ G + +A + + D V L++ E +GL ++ I
Sbjct: 62 MAQ---KSQPGQNMTIMQATNG-----VWDQEVRRVLLEKQCEKLGLRIGDDQLINIIKE 113
Query: 122 S------PLFHGKDNKFSHDVFVSRLAR-------EGINEKEYIDHYTKMLSRTDVVGMF 168
P F KF F L + E + M
Sbjct: 114 DPQFAQTPQFLNAAGKFDKAKFNEALLSLKKGSPEQWGKWLEDEKRIMQSTKEQMYSTMI 173
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAP 227
G + + D + + +P++A L + +K + Y+A
Sbjct: 174 QSGFYTTQAEAKFNYELENNKVTFDVVSVPYSTIEDKKVEPTDAELIAFMKKDEKKYKAD 233
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
E + + Y+ + +I D++ L
Sbjct: 234 ESRELEYVFVEDKASAVDKKIIEDKVNGL------------------LNPVADNPVTTTV 275
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ G K E + SDI S G F
Sbjct: 276 NEARVGFKNASSLVEFVNANSDIKYDSTYVSKKDLPVEHAEALFNLAPGQFYGPYMFGDY 335
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y I K + + K ++ KE K L + + +
Sbjct: 336 YGITKNLGRKVNANAKASHILISYEGTQVPNKKEKRTKEQAKAKAVSLLAQVLANPSAFQ 395
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ D + G + F F +P+ K V G ++
Sbjct: 396 ----MLAYTNSDDSSSQQGGDLGYFSQGQMVKPFNNFVFSNPVGKIGLVETDFGFHIINV 451
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ R L + K + T+++V + A + E + K F K +
Sbjct: 452 TDKQDAVRLATLAQ------KISPSEVTSDKVFTTATKF--EMAANEKAFDVAAKEMKLI 503
Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ ++ +D + G + + VF +K F I G V+ ++ +
Sbjct: 504 VAPAAKLLALDENVQGIGNQREIVRWVFGAKEGEIKRFNIPTGH--VIARLKKVNEAGLL 561
Query: 586 EKDKFISYLTQMMNKDLLDSVIA 608
++ + + + +I
Sbjct: 562 PIEEAKMAIGTKLRNEKKAELIK 584
Score = 91.8 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 67/593 (11%), Positives = 162/593 (27%), Gaps = 50/593 (8%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS--------GATLDQFIEDIG 107
F + ++ G + E+ +++ ++ A + +E+
Sbjct: 135 FNEALLSLKKGSPEQWGKWLEDEKRIMQSTKEQMYSTMIQSGFYTTQAEAKFNYELENNK 194
Query: 108 LE----------ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ + +V A F KD K L + +K
Sbjct: 195 VTFDVVSVPYSTIEDKKVEPTDAELIAFMKKDEKKYKADESRELEYVFVEDKASAVDKKI 254
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ + + + V + + + F + V+++ N+ S L
Sbjct: 255 IEDKVNGLLNPVADNPVTTTVNEARVGFKNASSLVEFVNANSDIKYDSTYVSKKDLPVEH 314
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT----VE 273
+ N ++ + N +A + + + E
Sbjct: 315 AEALFNLAPGQFYGPYMFGDYYGITKNLGRKVNANAKASHILISYEGTQVPNKKEKRTKE 374
Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
Q + + + + S LG FS+ + ++
Sbjct: 375 QAKAKAVSLLAQVLANPSAFQMLAYTNSDDSSSQQGGDLGYFSQGQMVKP--FNNFVFSN 432
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
G ++ FG+ I +V++ + + ++ K S K
Sbjct: 433 PVGKIG-LVETDFGFHIINVTDKQDAVRLA-----------TLAQKISPSEVTSDKVFTT 480
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
+ +E + + L + A + V I + +++ VFG + K
Sbjct: 481 ATKFEMAANEKAFDVAAKEMKLIVAPAAKLLALDENVQGIGNQREIVRWVFGAKEGEIKR 540
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ ++ ++K+ A +EE + + K AE + K
Sbjct: 541 FNIPTG---HVIARLKKVNEAGLLPIEEAKMAIGTKLRNEKKAELIKVKM---------S 588
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSY 571
G + K G+ + + + + G + FS +V N +
Sbjct: 589 GSTLEAVSKATGSPVKEVLDVVAANAYIQTIGVEPRVVGTAFSLKNGVVSQTIDGNSGVF 648
Query: 572 VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++ K + L+ + V LK ++ +
Sbjct: 649 KIKVKSSIKAPVAANYTDISARLSGQSKGSVSGRVYNALKKDATIEDNRAQFN 701
>gi|305666291|ref|YP_003862578.1| peptidylprolyl cis-trans isomerase [Maribacter sp. HTCC2170]
gi|88708283|gb|EAR00520.1| peptidylprolyl cis-trans isomerase [Maribacter sp. HTCC2170]
Length = 706
Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats.
Identities = 69/588 (11%), Positives = 168/588 (28%), Gaps = 43/588 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
LE IRK + V + + + F+I G+ ++ S+V + ++ F
Sbjct: 4 LENIRKRTT--VLILIIGMALFAFVISGVFTNNDFGGGKIGSSVAEINGNEISIDDFKRK 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A ++ + ++ D V + L Q ED+G++ + ++ I
Sbjct: 62 VETASNRFGPA---------ASTMQVVNQVWDQEVRNSILSQQFEDLGIDIERDQIMNFI 112
Query: 120 ARS------PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
P F ++ F + F + +A +N + + +
Sbjct: 113 KNMPSYSQSPQFQDENGIFDENKFRNFIADLKVNSPSQYNLWLQDEQSIIQNAKQQAYFN 172
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
+ + + + ++ ++V + +Y +
Sbjct: 173 LVKAGVGATLKEGELDYKLANDKVDIKYVRIPYISVPDSTLNITKSEIQSYINSHKEDFK 232
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ E ++ E + + K + EQ G
Sbjct: 233 QEEARDIQYVYFEEKASAEDENAVKDETIKLLEDTVEYREQ----------TDKMDTITG 282
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+ + SDI + K ++ K G+ + ++ +
Sbjct: 283 FRTTSDIADFLDRKSDIKFDTIYKAKRDLSTVFADTLVTLKMGETYGPYRDGDFFKVSKM 342
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
N K ++ A + EE + + ++++ V +
Sbjct: 343 VN------KKTNGSAKASHILIKWKGAERAEATVTRSKEEAEEMAKGILAETKKKDAVFV 396
Query: 414 DLPLVDFAG-KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+L + G G ++ + + + Y V+I +
Sbjct: 397 ELARDNSEGPSAPNGGDLGYFQEGRMVAEFNDFVFNNKVGTIDLVETALGYHIVKIDDKE 456
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
++ T ++ + T + + A + +E K F D+ K + N
Sbjct: 457 DIY-----QIATLAREIEPSENTINTLFTNATKFEMESISGEKAFTDLAKESEYVVRPVN 511
Query: 533 QINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+I MD + + F G ++ Y + ++T
Sbjct: 512 KIKAMDENLPGLTTQRNIVQWAFKGDTKVGDIKRFNLNNGYAIVQMTA 559
Score = 86.8 bits (212), Expect = 9e-15, Method: Composition-based stats.
Identities = 55/518 (10%), Positives = 142/518 (27%), Gaps = 27/518 (5%)
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
L + I ++ +E D K+L T
Sbjct: 213 LNITKSEIQSYINSHKEDFKQEEARDIQYVYFEEKASAEDENAVKDETIKLLEDTVEYRE 272
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
M + F +R D A + +
Sbjct: 273 QTDKMDTITGFRTTSDIADFLDRKSDIKFDTIYKAKRDLSTVFADTLVTLKMGETYGPYR 332
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ + + S+ ++ + + E + E++ E
Sbjct: 333 DGDFFKVSKMVNKKTNGSAKASHILIKWKGAERAEATVTRSKEEAEEMAKGILA---ETK 389
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ + + E + + LG F + + D +F+ ++ + G
Sbjct: 390 KKDAVFVELARDNSEGPSAPNGGDLGYFQEGRMV-AEFNDFVFNNKVG--TIDLVETALG 446
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y I + + + + ++ + + + K E ++ + ++++
Sbjct: 447 YHIVKIDDKEDIYQIATLAREIEPSENTIN----TLFTNATKFEMESISGEKAFTDLAKE 502
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ V + + + + + + ++ F D + L +G Y VQ
Sbjct: 503 SEYVVRPVNKIKA-----MDENLPGLTTQRNIVQWAFKGDTKVGDIKRFNLNNG-YAIVQ 556
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + + +E+ T V + + KA +L+ +GK+ DI K+ S
Sbjct: 557 MTAAYQEGLKTVEDASTTVLPILRKER-------KAAELIAA--NKGKSIEDIAKDNSVS 607
Query: 528 LLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + + G + + F+ V +++ + +
Sbjct: 608 VSNASALTVKAPTVPGAGREPAVVGTAFAMNVNDTSELIEGESGVFMISVTKKEEAPKLD 667
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
F + L + +V LK + +
Sbjct: 668 NYSTFANTLKTSNAARVNTAVYNALKEASEIEDNRATF 705
>gi|193214213|ref|YP_001995412.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton
thalassium ATCC 35110]
gi|193087690|gb|ACF12965.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton
thalassium ATCC 35110]
Length = 699
Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats.
Identities = 79/633 (12%), Positives = 181/633 (28%), Gaps = 74/633 (11%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
+ +R + V + + + WG+ D + V + + + + ++
Sbjct: 1 MNKMRDSM-HIVLYALVGAFVLLIVFEWGM-DFTGLNRRKTDAGVVNGKPISLTEYDATY 58
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ L Q+ V SE+ + + + D LVS LD E++GL + E+
Sbjct: 59 RRYLDGFRQRSNNVEISEQMDAR-MRDQAWDFLVSQILLDDKYEELGLFVTDEEIVSEVM 117
Query: 121 RS-------PLFHGKDN-KFSHDVFVSRLAR--EGINEKEYIDHYTKMLSRTDVVGMFVG 170
F K + + + +A + D + L + + +
Sbjct: 118 SDDPPAIIAQQFRDPKTGKINTEALQAAIASPENKEAWIQVEDIIRQELLFKKLQNLVMS 177
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQWFEKYKDNYRAPE 228
G+ ++ + S YI+ H A + + A + +F ++K++Y+
Sbjct: 178 GVFVTDDEARRLFDEQNTKVSGRYILFELAHAKADSLYEITEADIRNYFNEHKEDYKQDP 237
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ ++++F + +L+A K + + + V + +
Sbjct: 238 VREANFVMFSTAATTEDTLEIIHDLEALKPKFQTA------KNDTEFVELQSDRFADFVK 291
Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
+ + GK +++ + S K GD Y
Sbjct: 292 TYRPGKLDAKISRLFFDNPS------------------------LKVGDVVGPFQEFSEY 327
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I + I + + + V + K+L L E++R +
Sbjct: 328 KIVKILAIDSDEDRQAHASHILLKPEGARRADTLAVMAEAKQLMRELTSDEKFAEVAREK 387
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
G KG+ V + P + G ++ ++
Sbjct: 388 SDDPGSAQKGGDLGWFGKGRMV-------KEFEDAVFHAKPGQIVGPIQSQFGIHII-KV 439
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
R E V + + +Y + F K +
Sbjct: 440 HGFEDRAIRGAELVRKIKAGPATLERVNRQADEF------QYFATEEGFEKTAKQDSVEI 493
Query: 529 LTTNQINRMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG----- 582
T + + F + F V V I ++V+ ++T
Sbjct: 494 QKTGEFTKNGFIPSIGFNRSVSNFAFHEEVGAV-SPVISTQDAFVIMQLTGKNDDGYRKL 552
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
K+ + + +A L+ +
Sbjct: 553 DEDLKNTIREKVLREKK-------MADLREKAK 578
Score = 84.9 bits (207), Expect = 4e-14, Method: Composition-based stats.
Identities = 63/560 (11%), Positives = 161/560 (28%), Gaps = 55/560 (9%)
Query: 91 DNLVSGATLDQFIEDI---GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++++ L + ++++ G+ F ++ K S + LA +
Sbjct: 159 EDIIRQELLFKKLQNLVMSGVFVTDDEARRL------FDEQNTKVSGRYILFELAHAKAD 212
Query: 148 ---------EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
+ Y + + + + V M + + + ++
Sbjct: 213 SLYEITEADIRNYFNEHKEDYKQDPVREANFV-MFSTAATTEDTLEIIHDLEALKPKFQT 271
Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
++ + + + + Y+ + R+ + + + +
Sbjct: 272 AKNDTEFVELQSDRFADFVKTYRPGKLDAKISRLFFDNPSLKVGDVVGPFQEFSEYKIVK 331
Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEA-----------FQSLKKGKKFIQLAEEQGKS- 306
++ + + L +KF ++A E+
Sbjct: 332 ILAIDSDEDRQAHASHILLKPEGARRADTLAVMAEAKQLMRELTSDEKFAEVAREKSDDP 391
Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
LG F K + D++F K G I FG I V
Sbjct: 392 GSAQKGGDLGWFGKGRMVK-EFEDAVFHA-KPGQIVGPIQSQFGIHIIKVHG-------- 441
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
F++ A +R KA E R + + + + K S+++ K
Sbjct: 442 FEDRAIRGAELVRKIKAGPATLERVNRQADEFQYFATEEGFEKTAKQDSVEIQKTGEFTK 501
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE-V 482
+ + F + + V +++ +Q+ RKL+E +
Sbjct: 502 NGFIPSIGFNRSVSNFAFH-----EEVGAVSPVISTQDAFVIMQLTGKNDDGYRKLDEDL 556
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+++ K ++ KA ++ + + +I L +
Sbjct: 557 KNTIREKVLREKKMADLREKAKDVMAKADGNLQKAIEIDSLLTIHKTNQVMLTNAFVPGL 616
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMM 598
+ ++ + + V PIE + ++T G + K+ + Q
Sbjct: 617 GRDKNFVAALSALDEGKVSN-PIETKRGVAIAELTKKIKGFDSDFEVRKNALKDQILQEK 675
Query: 599 NKDLLDSVIAYLKSQYSVTV 618
K+++++ + LK +
Sbjct: 676 KKEVMNNWLKDLKESAKIED 695
>gi|90567994|dbj|BAE92208.1| peptidyl-prolyl cis-trans isomerase C [Flavobacterium
psychrophilum]
Length = 701
Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats.
Identities = 83/623 (13%), Positives = 171/623 (27%), Gaps = 58/623 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L IR+ ++++ + + F+I L + + ++ + F F
Sbjct: 4 LSKIRQ--KSFLVIAVVGIALFAFIIGALIENGGFGKTARNAGTINGVDISFEEFREKVD 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ G + +A + + D V L++ E +GL ++ I
Sbjct: 62 MAQ---KSQPGQNMTIMQATNG-----VWDQEVRRVLLEKQCEKLGLRIGDDQLINIIKE 113
Query: 122 S------PLFHGKDNKFSHDVFVSRLAR-------EGINEKEYIDHYTKMLSRTDVVGMF 168
P F KF F L + E + M
Sbjct: 114 DPQFAQTPQFLNAAGKFDKAKFNEALLSLKKGSPEQWGKWLEDEKRIMQSTKEQMYSTMI 173
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAP 227
G + + D + + +P++A L + +K + Y+A
Sbjct: 174 QSGFYTTQAEAKFNYELENNKVTFDVVSVPYSTIEDKKVEPTDAELIAFMKKDEKKYKAD 233
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
E + + Y+ + + +I D++ L
Sbjct: 234 ESRELEYVFVEDKASAEDKKIIEDKVNGL------------------LNPVADNPVTTTV 275
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ G K E + SDI S G F
Sbjct: 276 NEARVGFKNASNLVEFVNANSDIKYDSTYVSKKDLPVEHAEALFNLAPGQFYGPYMFGDY 335
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y I K + + K ++ KE K L + + +
Sbjct: 336 YGITKNLGRKVNANAKASHILISYEGTQVPNKKEKRTKEQAKAKAVSLLAQVLANPSAFQ 395
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ D + G + F F +P+ K V G ++
Sbjct: 396 ----MLAYTNSDDSSSQQGGDLGYFSQGQMVKPFNNFVFSNPVGKIGLVETDFGFHIINV 451
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ R L + K + T+++V + A + E + K F K +
Sbjct: 452 TDKQDAVRLATLAQ------KISPSEVTSDKVFTTATKF--EMAANEKAFDVAAKEMKLI 503
Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ ++ +D + G + + VF +K F I G V+ ++ +
Sbjct: 504 VAPAAKLLALDENVQGIGNQREIVRWVFGAKEGEIKRFNIPTGH--VIARLKKVNEAGLL 561
Query: 586 EKDKFISYLTQMMNKDLLDSVIA 608
++ + + + +I
Sbjct: 562 PIEEAKMAIGTKLRNEKKAELIK 584
Score = 92.6 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 67/593 (11%), Positives = 163/593 (27%), Gaps = 50/593 (8%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS--------GATLDQFIEDIG 107
F + ++ G + E+ +++ ++ A + +E+
Sbjct: 135 FNEALLSLKKGSPEQWGKWLEDEKRIMQSTKEQMYSTMIQSGFYTTQAEAKFNYELENNK 194
Query: 108 LE----------ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ + +V A F KD K L + +K +
Sbjct: 195 VTFDVVSVPYSTIEDKKVEPTDAELIAFMKKDEKKYKADESRELEYVFVEDKASAEDKKI 254
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ + + + V + + + F + V+++ N+ S L
Sbjct: 255 IEDKVNGLLNPVADNPVTTTVNEARVGFKNASNLVEFVNANSDIKYDSTYVSKKDLPVEH 314
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT----VE 273
+ N ++ + N +A + + + E
Sbjct: 315 AEALFNLAPGQFYGPYMFGDYYGITKNLGRKVNANAKASHILISYEGTQVPNKKEKRTKE 374
Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
Q + + + + S LG FS+ + ++
Sbjct: 375 QAKAKAVSLLAQVLANPSAFQMLAYTNSDDSSSQQGGDLGYFSQGQMVKP--FNNFVFSN 432
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
G ++ FG+ I +V++ + + ++ K S K
Sbjct: 433 PVGKIG-LVETDFGFHIINVTDKQDAVRLA-----------TLAQKISPSEVTSDKVFTT 480
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
+ +E + + L + A + V I + +++ VFG + K
Sbjct: 481 ATKFEMAANEKAFDVAAKEMKLIVAPAAKLLALDENVQGIGNQREIVRWVFGAKEGEIKR 540
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ ++ ++K+ A +EE + + K AE + K
Sbjct: 541 FNIPTG---HVIARLKKVNEAGLLPIEEAKMAIGTKLRNEKKAELIKVKM---------S 588
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSY 571
G + K G+ + + + + G + FS +V N +
Sbjct: 589 GSTLEAVSKATGSPVKEVLDVVAANAYIQTIGVEPRVVGTAFSLKNGVVSQTIDGNSGVF 648
Query: 572 VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++ K + L+ + V LK ++ +
Sbjct: 649 KIKVKSSIKAPVAANYTDISARLSGQSKGSVSGRVYNALKKDATIEDNRAQFN 701
>gi|325954706|ref|YP_004238366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM
16922]
gi|323437324|gb|ADX67788.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Weeksella virosa DSM
16922]
Length = 720
Score = 101 bits (250), Expect = 4e-19, Method: Composition-based stats.
Identities = 81/605 (13%), Positives = 171/605 (28%), Gaps = 61/605 (10%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-----VSGSSTVVSVGRQKVPFSSF 56
L IR+ R WV I + V V F+ L + S V +V +K+ +
Sbjct: 4 LGEIRR--RPWVIMIVIGVALVAFITGDLFSENSAIRKVFAGDPSVVGTVNGEKIGIGEY 61
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
N+ M+ + G V +A ++ +LVS + Q ++IGL+ W
Sbjct: 62 QNAINLTTNMLQAQ-GQNVTPNQAA-----QQTWASLVSSKIVQQIADNIGLKVSDEEFW 115
Query: 117 GEIARS-------PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
+A++ + + ++ + L
Sbjct: 116 DFVAQNFGMGSGDEAKNNIAQLEQAASANPEMMQQYQGWLSTANAIRSQLMLQKYSSYVK 175
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI--ADPSNAVLTQWFEKYKDNYRAP 227
++ D + + E ++DY ++ + S+ + + +K+ +
Sbjct: 176 ATTLVTSKEADIQQTYNAEMATIDYAKVDYGTLEKKLNVKVSDEDIKAYVKKHPKQFEVQ 235
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+++Y + +A + Q+ + +
Sbjct: 236 PMVKLAY--------------TFFPAKATAADEQAVLTEINRYKQSQIKHDKENNITDTI 281
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHG 344
S + + F+K+ + A S + A G
Sbjct: 282 VSFAQANNDSIYVSQNSDDP--FMSNYFTKQQLASFQLPEDAQSFINSATIGQVGGPFRI 339
Query: 345 SFGYVIA---HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
Y + IK S S V D + + K S++ + A
Sbjct: 340 GNSYQLFKLSKTKEIKDSVKSSHILVAFDGSPAAQGVKRSKEEAKKLAETYLAEAKANPS 399
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
+ EK G++ A P +F L +
Sbjct: 400 QFGALAEKYSDDKGSATQKGSIGWVGQQNALTPVYRSFIFSKPVGTIDLVESEF------ 453
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG-KNFRDI 520
Y +++ E+ + ++ ++ + +T+++ + A V + K+F +
Sbjct: 454 GYHIIRVDEAKNKTGYQFAHLVKKIEP---SKETSDKAFNDARVYVQSVENKSVKDFTTL 510
Query: 521 GKNLGASLLTTNQINRMDN-ENKFFGYDGISQVF------SGPVEMVKCFPIENGLSYVV 573
KN G T + R + D + F NG VV
Sbjct: 511 AKNKGYDTKETEGLERFATMIGENLPNDQDDAILAWAFGKKTDKGATNLFTTANGDYIVV 570
Query: 574 FKVTN 578
+
Sbjct: 571 HLIDK 575
Score = 84.1 bits (205), Expect = 7e-14, Method: Composition-based stats.
Identities = 60/524 (11%), Positives = 138/524 (26%), Gaps = 23/524 (4%)
Query: 104 EDIGLEADHGRVWGEIARSP-LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
+ + ++ + + + P F + F A + + S+
Sbjct: 210 KKLNVKVSDEDIKAYVKKHPKQFEVQPMVKLAYTFFPAKATAADEQAVLTEINRYKQSQI 269
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS--NAVLTQWFEKY 220
+ Y S D + N +A +
Sbjct: 270 KHDKENNITDTIVSFAQANNDSIYVSQNSDDPFMSNYFTKQQLASFQLPEDAQSFINSAT 329
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
P SY LF + + ++ + + E
Sbjct: 330 IGQVGGPFRIGNSYQLFKLSKTKEIKDSVKSSHILVAFDGSPAAQGVKRSKEEAKKLAET 389
Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
A+ + G + ++++G + S+G ++ F +K
Sbjct: 390 YLAEAKANPSQFGALAEKYSDDKGSATQKGSIGWVGQQNALTPVYR--SFIFSKPVGTID 447
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQE-VKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
++ FGY I V K F VKK ++ KA + + +E
Sbjct: 448 LVESEFGYHIIRVDEAKNKTGYQFAHLVKKIEPSKETSDKAFNDARVYVQSVENK--SVK 505
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+++ + + + ++ + + +L FGK +
Sbjct: 506 DFTTLAKNKGYDTKETEGLERFATMIGENLPND--QDDAILAWAFGKKTDKGATNLFTTA 563
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+G Y+ V + + V+ K + V+ K
Sbjct: 564 NGDYIVVHLIDKFDKGLAPASIARPLVEPILKKQLITKAVNEKI---------GNGGINA 614
Query: 520 IGKNLGASLLTTNQINRMDNE--NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
K+ GA + TT +N + + + F N Y +
Sbjct: 615 FMKSFGA-VKTTTNVNFGNGVIADVGIEPRVVGAAFGIKENTSSKAIQGNEGVYYII-TK 672
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ + Q+ D + + + + + ++I L + +
Sbjct: 673 SKTLPKGQKGDSLLENMNRSLKNKVEQTLIQSLIEAADIVDNRA 716
>gi|240080666|ref|ZP_04725209.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
FA19]
gi|268596788|ref|ZP_06130955.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268550576|gb|EEZ45595.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
Length = 512
Score = 101 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 82/484 (16%), Positives = 167/484 (34%), Gaps = 29/484 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISEHSINNAM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E G + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE----QADGGSP----------WRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KFSH + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPAHEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGS--FGYVIAH 352
A SL++ + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V + + + +A + V++ Y R E E+ +
Sbjct: 343 VLTTNSETAWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLN--G 400
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
V ++ V G + A + + K V L + V+++
Sbjct: 401 GKAVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAV 460
Query: 472 IPAR 475
P
Sbjct: 461 TPPE 464
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/342 (10%), Positives = 86/342 (25%), Gaps = 6/342 (1%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
E + + S + F L + +G + D
Sbjct: 49 EHSINNAMQNEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFH 108
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G F+ + + + ++ ++ + E RL
Sbjct: 109 DANGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLT 168
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + E I + D K+ +P +L + D K
Sbjct: 169 QVNRTI-RSHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADK 227
Query: 453 DHTVALPDGSYMWVQIKES-IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ ++ E+ V+ + K K + + +L +
Sbjct: 228 QTVSETEVKNAFEERVARLPAHEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAF 287
Query: 512 KEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIEN 567
+ + KN G + T ++R D + + I+ VFS + N
Sbjct: 288 NHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTTN 347
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ V + + ++ + Q + +
Sbjct: 348 SETAWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAEN 389
>gi|317177768|dbj|BAJ55557.1| hypothetical protein HPF16_0960 [Helicobacter pylori F16]
Length = 487
Score = 101 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 65/477 (13%), Positives = 161/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLATLKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + ++
Sbjct: 348 QTKDELQNFDEAKSALKTRLTQEKTLTALQTLAKEKLKDFKGKSVGYVSPNFGGTINELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINALFNRQEKKGFIAINNKMVLYQITEQNFNHSFSTEESQYMQRLVNNTK 464
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 33/260 (12%), Positives = 78/260 (30%), Gaps = 18/260 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLATLKPLEILK-----PEPFKDGFIVVQLISQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFDEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
N+ I+ +F+ E I N + N E+ +++ L
Sbjct: 406 --LNQEESAKFINALFN-RQEKKGFIAINNKMVLYQITEQNFNHSFSTEESQYMQRLVNN 462
Query: 598 MNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 463 TKTDFFDKALIEELKKRYKI 482
>gi|317014385|gb|ADU81821.1| hypothetical protein HPGAM_05060 [Helicobacter pylori Gambia94/24]
Length = 487
Score = 101 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 67/477 (14%), Positives = 160/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L F D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + K+L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLIIQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E ++ +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPSDVKISLNEEEMKKYYENHRKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----TDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLTALKPLEVLKPEPFKDGFIVVQLVS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + +S
Sbjct: 348 QIKDELQNFDEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ V + + +H + + YM + +
Sbjct: 408 QEESTKFINTLFNRQEKKGVVTIGNKVVLYQITEQNFNHPFSAEESQYMQRLVNNTK 464
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/255 (13%), Positives = 76/255 (29%), Gaps = 18/255 (7%)
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
+E + + + + + +E + R I ++
Sbjct: 245 ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQNYTT 304
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
+D + Q L + + ++ VQ+ I + +E
Sbjct: 305 QDFEENNSPYTAEITQKLTALKPLEVLK-----PEPFKDGFIVVQLVSQIKDELQNFDEA 359
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+ +K KT + + A + + ++ +GK+ + N G ++ NQ N
Sbjct: 360 KSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISELNQEESTKFINT 417
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
F E I N + N E+ +++ L D
Sbjct: 418 LFNRQ----------EKKGVVTIGNKVVLYQITEQNFNHPFSAEESQYMQRLVNNTKTDF 467
Query: 603 LD-SVIAYLKSQYSV 616
D ++I LK +Y +
Sbjct: 468 FDKALIEELKKRYKI 482
>gi|308184755|ref|YP_003928888.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
[Helicobacter pylori SJM180]
gi|308060675|gb|ADO02571.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
[Helicobacter pylori SJM180]
Length = 487
Score = 101 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 67/477 (14%), Positives = 160/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + K+L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----TDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLVALKPLEVLKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + +S
Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINTLFNRQEKKGFITIGNKVVLYQITEQNFNHSFSTEESQYMQRLVNNTK 464
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 33/257 (12%), Positives = 81/257 (31%), Gaps = 22/257 (8%)
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
+E + + + + + +E + R I ++
Sbjct: 245 ELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANAQNYTT 304
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
+D + Q L + + ++ VQ+ I + E
Sbjct: 305 QDFEENNSPYTAEITQKLVALKPLEVLK-----PEPFKDGFIVVQLISQIKDELQNFNEA 359
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+ +K KT + + A + + ++ +GK+ + N G ++ N+
Sbjct: 360 KSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE---------LNQ 408
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLTQMMNK 600
I+ +F+ + G V++++T E+ +++ L
Sbjct: 409 EESAKFINTLFNRQEKKGFITI---GNKVVLYQITEQNFNHSFSTEESQYMQRLVNNTKT 465
Query: 601 DLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 466 DFFDKALIEELKKRYKI 482
>gi|207091647|ref|ZP_03239434.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori
HPKX_438_AG0C1]
Length = 487
Score = 101 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 67/477 (14%), Positives = 161/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + K+L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYVALKKANAKNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + +S
Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINTLFNRQEKKGFVTIGNKVVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/262 (12%), Positives = 81/262 (30%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R +
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYVALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ I +
Sbjct: 300 KNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQIKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLT 595
N+ I+ +F+ + G V++++T E+ +++ L
Sbjct: 406 --LNQEESAKFINTLFNRQEKKGFVTI---GNKVVLYQITEQNFNHSFSAEESQYMQRLV 460
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 461 NNTKTDFFDKALIEELKKRYKI 482
>gi|149924976|ref|ZP_01913302.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1]
gi|149814159|gb|EDM73776.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1]
Length = 630
Score = 101 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 94/657 (14%), Positives = 194/657 (29%), Gaps = 101/657 (15%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
M R V + L VL + F + +GL SV S V Q V F +
Sbjct: 1 MFGSERGKGGDIVVWLILGVLALAFGLTFGLPSDQLSVGESGY-ARVFGQNVTKEDF--A 57
Query: 60 WKQELGMISQKIGFVVNS---ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++ + +G V E+ R+ G+ +++L+ +V L E++GL R
Sbjct: 58 YQ------QRALGTVFPLPEGEQGRTFGVREEVLEAIVERLVLASTGEELGLM-TETRDA 110
Query: 117 GEIARSPLF----------HGKDNKFSHDVFVSRLAREGI--NEKEYIDHYTKMLSRTDV 164
E+ R + + KF ++ F + R + +E Y++ + L
Sbjct: 111 EEMTRDGFYIILDLDRGFPWAGEAKFDYEWFKNDFLRGYLVVSEPRYLEIQRQELLARQT 170
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ + + S+ Y+ + DP+ A + W ++ D
Sbjct: 171 RDLIAASVVVPEAEVWAEFEKRNNQLSLRYVRFPPNDYAELVDPTAAEVDGWMMEHPDEL 230
Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
+ + L E + +I E+ + + + + K
Sbjct: 231 TEMYEREAARFLKLPAEVDLRI----IEVAKPMQPPADAGEEVQAMWEANVAAAKAKAEL 286
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS------LADSIFSLAKKGDF 338
+ + G++F +A E +++ +G + D + G
Sbjct: 287 ARTRIVDNGERFSTVARELSEAIDTARIGGRYGWTQVTDTGSGLDRAVDKAAQALEDGQV 346
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ VI G + V+ + Q ++ + +R + E K+ L G
Sbjct: 347 SEVIEGESALFVVMVAGHREGDVPEDQAKRELAEDAVRSARGRELAKQAADEALLALREG 406
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ K + G ++ L G+++ + A
Sbjct: 407 GKDLDDLFGAKTP-------ELGKPGALGGLGGGGGLEDAPLGEGAGEEEGAGEGEEGAP 459
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ + + E+ + G+
Sbjct: 460 AEAPAVAKNVD------FSPKIEIKE-----------------------TGLFQFGEAIP 490
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
DIG N G +L I +VF+ P Y+V V
Sbjct: 491 DIGANPGLTLAAWE---------VNMDEPVIDEVFNTPAG------------YLVAVVDE 529
Query: 579 SKVGP----VQEKDKFISYLTQMMNKDLLDSVIA---YL-KSQYSVTVHDNLIQRYL 627
+E+ + LT+ +L + YL K+ + +D + + +
Sbjct: 530 RSQADRERYAEERAEIYDRLTRTRAIGVLSAFTKHRCYLGKATVDIRTNDRAVDQLM 586
>gi|239995521|ref|ZP_04716045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alteromonas
macleodii ATCC 27126]
Length = 101
Score = 101 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLE IR+ S+ A + ++ + F+ G+ L S SG++ V +V +++ ++
Sbjct: 1 MLERIREGSQGPWAMAIIALIVLSFVFAGVGSYLTS-SGTTAVATVNGEEISAQELERAY 59
Query: 61 KQELGMISQKIGFVVN---SERARSVGLDKKILDNLVSGATL 99
+ + + + G + S + +LD L++ +
Sbjct: 60 QNQRAQMESQYGESIAQLFSSEQYLADFRRNVLDRLIAEKLI 101
>gi|189219654|ref|YP_001940295.1| Peptidyl-prolyl cis-trans isomerase [Methylacidiphilum infernorum
V4]
gi|189186512|gb|ACD83697.1| Peptidyl-prolyl cis-trans isomerase [Methylacidiphilum infernorum
V4]
Length = 507
Score = 101 bits (249), Expect = 5e-19, Method: Composition-based stats.
Identities = 63/507 (12%), Positives = 161/507 (31%), Gaps = 32/507 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+I+R +W+ I L + + FL++ + S + +V + + + +F +
Sbjct: 1 MLKILRTH--SWLLIIVLAAIGISFLLF-FNIPALSGLKNPSVAKIAGKNISLETFRLA- 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+Q + G + + LD+ L+ Q ++ V I
Sbjct: 57 RQASSIEMALSGSRQSYGENLQLILDQMAWTRLI----FLQAAKEFHCIVPEEEVVRFIQ 112
Query: 121 RSPLFHGKDNKFSHDVFVSRLAR----EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+ P F K+ K+ ++ ++ +GI+E+ ++ + L V V +
Sbjct: 113 QLP-FLQKEGKYDASLYKRFVSSFLTPQGISEERFLQVMHEELVIGKVKKALVAPIEVIP 171
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+D+ F V + +N + + ++ + + ++
Sbjct: 172 KEVDEIYAMTFGQVRVVLLRMNLEDFKKNIQIQPEEIEKEYKSHPKDPDYYTPEKRKAGF 231
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ + EL+ K E+ I Q+ A + +
Sbjct: 232 VFFPFPAELQNLKGKELEEAKRKILEQAEDFAIEASRQVENSAANFEQLAKEKNLSYQLT 291
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVS-LADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
++ I + + ++F L+ + + S GY + + N
Sbjct: 292 EPFPADK------------PPSAIVEPEKFSKTVFGLSLDKAVSEPVETSKGYYVVVLLN 339
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE-EFLALGTSMDEISRREKIVSID 414
++ F E+K + +++ KA E + + ++E + +I + K +
Sbjct: 340 VEKGSLRPFDEIKSTVEEKLKRKKAFEALFQKSAQIEKDLNRALKEGKDIEQLAKAEGLS 399
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ + + + +P+ H + +G ++
Sbjct: 400 VEKPPAF----VPIDPPKDLEAGNEIGFLCQLLEPMRLSHFLPTMNGGVFIY-LENRSAP 454
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSS 501
E+ ++KD + +
Sbjct: 455 EMPNELEIKDRLEKDLLMSRRQAFLEE 481
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 5/134 (3%)
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF-GYDGIS 550
K E+ A + + NF + K S T +
Sbjct: 252 KRKILEQAEDFAIEASRQVENSAANFEQLAKEKNLSYQLTEPFPADKPPSAIVEPEKFSK 311
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
VF ++ P+E Y V + N + G ++ D+ S + + + + + A
Sbjct: 312 TVFGLSLDKAVSEPVETSKGYYVVVLLNVEKGSLRPFDEIKSTVEEKLKR--KKAFEALF 369
Query: 611 KSQYSVT--VHDNL 622
+ + ++ L
Sbjct: 370 QKSAQIEKDLNRAL 383
>gi|15645592|ref|NP_207768.1| hypothetical protein HP0977 [Helicobacter pylori 26695]
gi|2314119|gb|AAD08023.1| conserved hypothetical secreted protein [Helicobacter pylori 26695]
Length = 487
Score = 101 bits (249), Expect = 6e-19, Method: Composition-based stats.
Identities = 66/477 (13%), Positives = 161/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + +S
Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINALFNRQEKKGFIAINNKVVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/262 (12%), Positives = 80/262 (30%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ I +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLTALKPLEILK-----PEPFKDGFIVVQLISQIKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLT 595
N+ I+ +F+ + V++++T E+ +++ L
Sbjct: 406 --LNQEESAKFINALFNRQEKKGFIAI---NNKVVLYQITEQNFNHSFSAEESQYMQRLV 460
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 461 NNTKTDFFDKALIEELKKRYKI 482
>gi|217033935|ref|ZP_03439358.1| hypothetical protein HP9810_883g5 [Helicobacter pylori 98-10]
gi|216943568|gb|EEC23016.1| hypothetical protein HP9810_883g5 [Helicobacter pylori 98-10]
Length = 487
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 64/477 (13%), Positives = 159/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSGS---AAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + ++
Sbjct: 348 QTKDELQNFNEAKSTLKTRLTQEKTLTALQTLAKEKLKDFKGKSVGYVSPNFGGTINELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINALFNRQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/260 (12%), Positives = 77/260 (29%), Gaps = 18/260 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKSTLKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
N+ I+ +F+ E I N + N E+ +++ L
Sbjct: 406 --LNQEESAKFINALFN-RQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNN 462
Query: 598 MNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 463 TKTDFFDKALIEELKKRYKI 482
>gi|194098675|ref|YP_002001737.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
NCCP11945]
gi|240016542|ref|ZP_04723082.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
FA6140]
gi|240112969|ref|ZP_04727459.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
MS11]
gi|240118019|ref|ZP_04732081.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
PID1]
gi|240123573|ref|ZP_04736529.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
PID332]
gi|240125755|ref|ZP_04738641.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
SK-92-679]
gi|240128277|ref|ZP_04740938.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
SK-93-1035]
gi|260440465|ref|ZP_05794281.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
DGI2]
gi|268599050|ref|ZP_06133217.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
gi|268603732|ref|ZP_06137899.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
gi|268682203|ref|ZP_06149065.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
gi|268684354|ref|ZP_06151216.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
SK-92-679]
gi|268686675|ref|ZP_06153537.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
SK-93-1035]
gi|291043765|ref|ZP_06569481.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|193933965|gb|ACF29789.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
NCCP11945]
gi|268583181|gb|EEZ47857.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
gi|268587863|gb|EEZ52539.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
gi|268622487|gb|EEZ54887.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
gi|268624638|gb|EEZ57038.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
SK-92-679]
gi|268626959|gb|EEZ59359.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
SK-93-1035]
gi|291012228|gb|EFE04217.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 512
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 83/484 (17%), Positives = 168/484 (34%), Gaps = 29/484 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISEHSINNAM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E G + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE----QADGGSP----------WRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KFSH + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPAHEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGS--FGYVIAH 352
A SL++ + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V I + + + +A + V++ Y R E E+ +
Sbjct: 343 VLTINSETAWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLN--G 400
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
V ++ V G + A + + K V L + V+++
Sbjct: 401 GKAVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAV 460
Query: 472 IPAR 475
P
Sbjct: 461 TPPE 464
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/342 (10%), Positives = 86/342 (25%), Gaps = 6/342 (1%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
E + + S + F L + +G + D
Sbjct: 49 EHSINNAMQNEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFH 108
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G F+ + + + ++ ++ + E RL
Sbjct: 109 DANGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLT 168
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + E I + D K+ +P +L + D K
Sbjct: 169 QVNRTI-RSHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADK 227
Query: 453 DHTVALPDGSYMWVQIKES-IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ ++ E+ V+ + K K + + +L +
Sbjct: 228 QTVSETEVKNAFEERVARLPAHEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAF 287
Query: 512 KEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIEN 567
+ + KN G + T ++R D + + I+ VFS + N
Sbjct: 288 NHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTIN 347
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ V + + ++ + Q + +
Sbjct: 348 SETAWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAEN 389
>gi|325294382|ref|YP_004280896.1| hypothetical protein Dester_0180 [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064830|gb|ADY72837.1| hypothetical protein Dester_0180 [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 440
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 42/299 (14%), Positives = 90/299 (30%), Gaps = 7/299 (2%)
Query: 1 MLEIIRKASR--TWVAKIFLV-VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
ML IRK R + I + FL+WG + S V +V + + F
Sbjct: 1 MLSKIRKNMRAFSLPLWIVAASFVGTIFLVWGKGS--LTGPSGSEVATVNGEPIDLIEFN 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ Q + Q+ G + + L L++ + + + G++ V
Sbjct: 59 REYNQLTNQLQQQFGENY-RKLFPDKEIKIAALQRLINRKLVLEEAKKEGIQVSDWAVAK 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F KD KFS +++ L ++ K + D + L ++ + +
Sbjct: 118 RIRSFP-FLQKDGKFSEELYKEFLKANRLSPKVFEDKIREDLLIEKIMAVIDKAPSVTTF 176
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L R F R Y + + + + + + I
Sbjct: 177 ELQNLYRKTFGKREFKYKLFLKKDYKPSISEKELREFYRENISQFKEKTGKKYFLIKIPK 236
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ E + + + + ++ + + + + + F
Sbjct: 237 SQKDSEGLARKVYNLAKLGKVEKLNDFHPQQVNDKKLISEKFKDKNFGFYSDESNYYVF 295
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/287 (11%), Positives = 85/287 (29%), Gaps = 20/287 (6%)
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
+F + +KKD + + E +E+ + +E
Sbjct: 171 PSVTTFELQNLYRKTFGKREFKYKLFLKKDYKPSISEKELREFYRENISQFKEKTGKKYF 230
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ +I + +K V K K +++ ++ ++ + +
Sbjct: 231 LIKIPKSQKDSEGLARKVYNLAKLGKVEKLNDFHPQQVNDKKLISEKFKDKNFGFYSDES 290
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
Y++ + + + E V D++K K K E A + + + +
Sbjct: 291 NYYVFFKKEGEKA---KPFETVKKDIEKTLKEKKAVELAKKSAEEFLKKGLE-------- 339
Query: 521 GKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVT- 577
T ++R F I +FS + NG
Sbjct: 340 ------PKEKTKPLDRDQFFEMFKPINPQEIENIFSSKKGKRFLLVLTNGYGIFEPITDL 393
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++ +K ++ + + + L+ + ++ V++ +
Sbjct: 394 KVEKMEKEKIEKLKQFILDAKKQSDYQNFLNLLRQKANIKVNEKFFK 440
>gi|224373001|ref|YP_002607373.1| hypothetical protein NAMH_0972 [Nautilia profundicola AmH]
gi|223589838|gb|ACM93574.1| conserved hypothetical protein [Nautilia profundicola AmH]
Length = 478
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 67/515 (13%), Positives = 155/515 (30%), Gaps = 47/515 (9%)
Query: 1 MLEIIRKASRTWVAKIFLV---VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + F+ WG SSTV + +V
Sbjct: 1 MIEWMQTHRKWLVITIWIATIAFIGAGFVGWG---QFQFGRKSSTVAKIKDTEVSIQDVQ 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ ++++G ++ A +GL K+ D + L Q+ +D+G+ V
Sbjct: 58 EVYNNLFQEKNKQLGGTLDDATAEKMGLKKQAFDMAIQQGILRQYAKDLGMYVTDEEVAK 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++ + ++ L + G K++ K L ++ +
Sbjct: 118 QVLQ--------YFKDKKTYLMYLKQTGQKAKDFEAKLRKQLLIQKLL----TALHIKPS 165
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
Q S + + + S + ++EK K Y++P +I+ +
Sbjct: 166 KTLQLTFASALYNSDNLEIKIINKSSVKVNLSEDEIKAFWEKNKQKYQSPTMYKIAIVKT 225
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + ++L+A Y +NK Y + + + ++ ++ +
Sbjct: 226 PIKGVA-----TENDLKAFYNENKTNYRNDKGE-----ILTYEEAKNQVKKDYLAKISKK 275
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
K I + + + + + Y+ A +
Sbjct: 276 DAIIAYKKLKEGAENYELLTLTINNKIIPAEKMQKLIQTGYLKPFVDNNEYISAKLVEEI 335
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ ++E K + + K + ++ K + +
Sbjct: 336 KPKPLPYEEAKAQVTKDLLNIKTLQALENKAKEA------------------LKGFNGTK 377
Query: 418 VDFAGKDVKGKEVAAIPY-KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
F K K P + LF F + + AL + ++ E
Sbjct: 378 TGFVTKYDANKIKGLSPQEATEFLFTEFSLELNKNYLLIPALNPQKAVVYKVLEQKLLDK 437
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
K E+ V A + L+ +Y+
Sbjct: 438 AKYEKNKEQVAAMADATLNAALLDDLIKDLMAKYN 472
>gi|217032656|ref|ZP_03438143.1| hypothetical protein HPB128_19g17 [Helicobacter pylori B128]
gi|298736064|ref|YP_003728589.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori B8]
gi|216945666|gb|EEC24294.1| hypothetical protein HPB128_19g17 [Helicobacter pylori B128]
gi|298355253|emb|CBI66125.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori B8]
Length = 487
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 66/477 (13%), Positives = 161/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + +S
Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQALAKEKLKDFKGKSVGYVSPNFGGTISELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINTLFNRQEKKGFITIGNKVVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/262 (12%), Positives = 81/262 (30%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ I +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLTALKPLEILK-----PEPFKDGFIVVQLISQIKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLT 595
N+ I+ +F+ + G V++++T E+ +++ L
Sbjct: 406 --LNQEESAKFINTLFNRQEKKGFITI---GNKVVLYQITEQNFNHSFSAEESQYMQRLV 460
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 461 NNTKTDFFDKALIEELKKRYKI 482
>gi|317012785|gb|ADU83393.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
[Helicobacter pylori Lithuania75]
Length = 487
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 66/477 (13%), Positives = 162/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG + S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYNFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDRLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYVALKKANAQNYTTQD-FEENNSPYTAEITQKLATLKPLEILKPEPFKDGFIVVQLVS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + +S
Sbjct: 348 QTKDELQNFNEAKSTLKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINALFNRQEKKGFIAIGDKVVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/262 (11%), Positives = 80/262 (30%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R +
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYVALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLATLKPLEILK-----PEPFKDGFIVVQLVSQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKSTLKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLT 595
N+ I+ +F+ + G V++++T E+ +++ L
Sbjct: 406 --LNQEESAKFINALFNRQEKKGFIAI---GDKVVLYQITEQNFNHSFSAEESQYMQRLV 460
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 461 NNTKTDFFDKALIEELKKRYKI 482
>gi|108563383|ref|YP_627699.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPAG1]
gi|107837156|gb|ABF85025.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori HPAG1]
Length = 487
Score = 100 bits (248), Expect = 6e-19, Method: Composition-based stats.
Identities = 67/477 (14%), Positives = 162/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG + S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYNFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPDFKELTKDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++G + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKGNVQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + +S
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTISELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINTLFNRQEKKGFITIGNKVVLYQITEQNFNHSFSTEESQYMQRLVNNTK 464
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 32/262 (12%), Positives = 81/262 (30%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I +
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKGNV 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTISE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLT 595
N+ I+ +F+ + G V++++T E+ +++ L
Sbjct: 406 --LNQEESAKFINTLFNRQEKKGFITI---GNKVVLYQITEQNFNHSFSTEESQYMQRLV 460
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 461 NNTKTDFFDKALIEELKKRYKI 482
>gi|239998983|ref|ZP_04718907.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
35/02]
gi|268594831|ref|ZP_06128998.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268548220|gb|EEZ43638.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|317164277|gb|ADV07818.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 512
Score = 100 bits (248), Expect = 7e-19, Method: Composition-based stats.
Identities = 83/484 (17%), Positives = 168/484 (34%), Gaps = 29/484 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISEHSINNAM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E G + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE----QADGGSP----------WRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KFSH + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K +S E++ +E+ + P + V K K +K
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPAHEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGDFTPVIHGS--FGYVIAH 352
A SL++ + S K + L D+ S + V +
Sbjct: 283 GDDAFNHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSE 342
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V I + + + +A + V++ Y R E E+ +
Sbjct: 343 VLTINSETAWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLN--G 400
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-MWVQIKES 471
V ++ V G + A + + K V L + V+++
Sbjct: 401 GKAVDVKWSEVSVLGAQQARQSMPPEAYAELLKAKPANGKPAYVRLTGLPAPVIVEVQAV 460
Query: 472 IPAR 475
P
Sbjct: 461 TPPE 464
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/342 (10%), Positives = 86/342 (25%), Gaps = 6/342 (1%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
E + + S + F L + +G + D
Sbjct: 49 EHSINNAMQNEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFH 108
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G F+ + + + ++ ++ + E RL
Sbjct: 109 DANGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLT 168
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + E I + D K+ +P +L + D K
Sbjct: 169 QVNRTI-RSHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADK 227
Query: 453 DHTVALPDGSYMWVQIKES-IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ ++ E+ V+ + K K + + +L +
Sbjct: 228 QTVSETEVKNAFEERVARLPAHEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAF 287
Query: 512 KEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIEN 567
+ + KN G + T ++R D + + I+ VFS + N
Sbjct: 288 NHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTIN 347
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ V + + ++ + Q + +
Sbjct: 348 SETAWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAEN 389
>gi|293399048|ref|ZP_06643213.1| peptidyl-prolyl cis-trans isomerase D [Neisseria gonorrhoeae F62]
gi|291610462|gb|EFF39572.1| peptidyl-prolyl cis-trans isomerase D [Neisseria gonorrhoeae F62]
Length = 512
Score = 100 bits (247), Expect = 8e-19, Method: Composition-based stats.
Identities = 65/415 (15%), Positives = 154/415 (37%), Gaps = 21/415 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISEHSINNAM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E G + +L+ A L Q + +G+ ++ IA
Sbjct: 57 QNE----QADGGSP----------WRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIA 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KFSH + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ K +S E++ +E+ + + E + + + + +++ K +
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPAHEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ + SL +K V ++ S + V
Sbjct: 283 GDDAFNHPS-SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLK--KKH 339
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ + A +R + E+ ++ ++ + E ++ + + ++
Sbjct: 340 NSEVLTINSETAWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEV 394
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/342 (11%), Positives = 87/342 (25%), Gaps = 6/342 (1%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
E + + S + F L + +G +AD
Sbjct: 49 EHSINNAMQNEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIADDPNFH 108
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G F+ + + + ++ ++ + E RL
Sbjct: 109 DANGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLT 168
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + E I + D K+ +P +L + D K
Sbjct: 169 QVNRTI-RSHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADK 227
Query: 453 DHTVALPDGSYMWVQIKES-IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ ++ E+ V+ + K K + + +L +
Sbjct: 228 QTVSETEVKNAFEERVARLPAHEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAF 287
Query: 512 KEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIEN 567
+ + KN G + T ++R D + + I+ VFS + N
Sbjct: 288 NHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTIN 347
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ V + + ++ + Q + +
Sbjct: 348 SETAWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAEN 389
>gi|126662464|ref|ZP_01733463.1| peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium BAL38]
gi|126625843|gb|EAZ96532.1| peptidyl-prolyl cis-trans isomerase [Flavobacteria bacterium BAL38]
Length = 685
Score = 100 bits (247), Expect = 9e-19, Method: Composition-based stats.
Identities = 76/625 (12%), Positives = 180/625 (28%), Gaps = 77/625 (12%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L IR+ R++ I + + F++ + + +G++ V SV + F+ +
Sbjct: 4 LSKIRQ--RSFFLIIIIALALFSFVLADVIQSGTFGTGANDVGSVNGNDIEAQQFMQNVA 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
G ++ +A + V L + + +GL+ ++ I +
Sbjct: 62 MIEKQ-----GQGTSTTQAM-----NSAWEQEVRKIILTEEFDKLGLKIGSEQLINVIKQ 111
Query: 122 SPL------FHGKDNKFSHDVFVSRL--------AREGINEKEYIDHYTKMLSRTDVVGM 167
+P F +F + F L + + KE+ + K M
Sbjct: 112 NPNLAQNPQFLNAAGQFDENKFKESLKGIKNAPDQTQWLQWKEFEKNIEKYAVEQMYNTM 171
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI-ADPSNAVLTQWFEKYKDNYRA 226
G+ + + DY+ + V S++ + + +K Y++
Sbjct: 172 IKSGVYTTKAEGKFQYTLENDKVDFDYVTVAFSTVNDDEVKVSDSEIIDFMKKSPKKYKS 231
Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
I ++L + + + + +++ + A+
Sbjct: 232 DNTSSIEFVLVENKPS-----------KEDEQAMLSSIGDVKVKFDSVVNVGEFVNANSD 280
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ L + G +
Sbjct: 281 IKFDSTYVTKKDLPLDY-----------------------QEQLFNLPVGGVYGPYVFNG 317
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
I+ + + K K + A + K + LA +
Sbjct: 318 HQCISRMISKKA------NASAKASHILLAYKGAPQSSATRTKEEAQALANNLLAQAKAN 371
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAI-PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
E + + D G G E I P + F F ++ + V G ++
Sbjct: 372 PENFAVLAMANSDDPGSKNNGGEYDNITPGQMVPQFNDFVFNNVIGSIGVVETDYGFHVI 431
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ + V ++ + T + + +KA+QL + ++ +F I K G
Sbjct: 432 KVMDKYNSVLMGT---VAQKIQP---SDATIDAIYTKASQLEADANEN-SDFAAIAKKAG 484
Query: 526 ASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
++ + D + G + + F+ E+ E +V+ K+ +
Sbjct: 485 LEVVPATNLKGSDEYVQGVGSQREIVRWSFNKDTEIGDVKRFEVPQGFVIAKLKDKNESG 544
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIA 608
+ D + ++ +I
Sbjct: 545 LLPIDIARQSVEVLIKNQKKAEIIK 569
Score = 83.4 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 41/338 (12%), Positives = 96/338 (28%), Gaps = 23/338 (6%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP-VIHGS 345
Q+ + F LA + G P + + + V+
Sbjct: 366 AQAKANPENFAVLAMANSDDPGSKNNGGEYDNITPGQMVPQFNDFVFNNVIGSIGVVETD 425
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
+G+ + V + S + K + + + +LE + I+
Sbjct: 426 YGFHVIKVMDKYNSVLMGTVAQKIQPS-----DATIDAIYTKASQLEADANENSDFAAIA 480
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
++ + V + V + + +++ F KD + +P G ++
Sbjct: 481 KKAGLEV-----VPATNLKGSDEYVQGVGSQREIVRWSFNKDTEIGDVKRFEVPQG-FVI 534
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++K+ + ++ V+ K K AE + K G + + + G
Sbjct: 535 AKLKDKNESGLLPIDIARQSVEVLIKNQKKAEIIKKKM---------NGTSLEAVAQKSG 585
Query: 526 ASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
AS+ + G + I + F N +++ +K
Sbjct: 586 ASVQPATGVTLKTPNLPNIGNEPKVIGKAFGLAAGKTSEIIEGNSGMFMIRAKAVTKAPE 645
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
V +I+ LK + + +
Sbjct: 646 VPSYATYITQYRSQNQSYASSMAYMALKEKAEIKDNRA 683
>gi|210135166|ref|YP_002301605.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori P12]
gi|210133134|gb|ACJ08125.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori P12]
Length = 487
Score = 100 bits (247), Expect = 1e-18, Method: Composition-based stats.
Identities = 66/477 (13%), Positives = 160/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + F + P + + K + G+++ + +
Sbjct: 289 RSYVALKKANVQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + +S
Sbjct: 348 QIKDELQNFDEAKSTLKTRLTQEKTLMALQALAKEKLKDFKGKSVGYVSPNFGGTISELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINTLFNRQEKKGFITIGNKVVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 32/262 (12%), Positives = 83/262 (31%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R + +
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYVALKKANV 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ I +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQIKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFDEAKSTLKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLT 595
N+ I+ +F+ + G V++++T E+ +++ L
Sbjct: 406 --LNQEESAKFINTLFNRQEKKGFITI---GNKVVLYQITEQNFNHSFSAEESQYMQRLV 460
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 461 NNTKTDFFDKALIEELKKRYKI 482
>gi|332519007|ref|ZP_08395474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
5H-3-7-4]
gi|332044855|gb|EGI81048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
5H-3-7-4]
Length = 711
Score = 100 bits (247), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/599 (10%), Positives = 168/599 (28%), Gaps = 53/599 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR+ +T V + + + F++ L D + V ++ + + +F+
Sbjct: 4 LNKIRQ--KTVVLILVIALALFAFILSSLFDNKDALFNKSPNVVATINGKDISREAFMAR 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ + N+ A + ++ + V A + + +GL ++ +
Sbjct: 62 VEAQ------------NNPNATQTQIMNQVYNAEVREAVMQSQFDKLGLTVGREQMRDLL 109
Query: 120 ARS----PLFHGKDNKFSHDVFVSRLAR-------EGINEKEYIDHYTKMLSRTDVVGMF 168
+ P F D F +V + +A Y + + + + + M
Sbjct: 110 KTNLASSPQFFNADGIFDENVLNNYIANLKETSPVAYRQWINYENQVSSGALQQNYINMV 169
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRAP 227
+ + + + + Y+ + + + S + + + ++ K Y
Sbjct: 170 KAATTATLAEGALSHKLEGDKVDIKYVYVPFTTIADSTVTVSKSEINAYIKENKTKYDVE 229
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ + Y+ F+ + EL + + Q+V + E
Sbjct: 230 ASRNLQYVKFEEVASVEDENAIQGELIKLIQN-----REEYVDGKNQMVAGFAEMNVENA 284
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
++ ++ + S G+
Sbjct: 285 EAYVNANSDAEIKYQDKFVYKSSL-----------PRALQDSISNLNVGNVYGPYKDGQT 333
Query: 348 YVIAHVSNIK--PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
+ I + + S + + +Q + ++ +E + L +
Sbjct: 334 FKITKLLEKRQLADSIQSSHILIPFVGSQAATAETTKTKEEAKATADSIFKLVKNNKTKY 393
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
G + P F F + V G ++
Sbjct: 394 AEVANEINTDGSKGKDGSIGWTRLTTYNPLGFDPDFANFLFFNDKGSIDVVLTKFGYHII 453
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ K+ + ++ KT +++ A+ + +GK+F D+ K
Sbjct: 454 RIDDKKNVDTAYKVATIERKIEPSV---KTEDDIFRNASNFEVAL--DGKDFLDVAKENN 508
Query: 526 ASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
+ + +D G + + F ++ E YV+ +VT
Sbjct: 509 LKVNPVTSVKELDENIPGVGAERPIVRWAFEEDTKVGNTKRFETKDGYVIVQVTAKNEA 567
Score = 82.6 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/518 (9%), Positives = 128/518 (24%), Gaps = 22/518 (4%)
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ + I + + + + +V + ++ I L + +
Sbjct: 208 VTVSKSEINAYIKENKTKYDVEAS-RNLQYVKFEEVASVEDENAIQGELIKLIQNREEYV 266
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+ + + + + L
Sbjct: 267 DGKNQMVAGFAEMNVENAEAYVNANSDAEIKYQDKFVYKSSLPRALQDSISNLNVGNVYG 326
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
YK +++++ S + + E ++ +
Sbjct: 327 PYKDGQTFKITKLLEKRQLADSIQSSHILIPFVGSQAATAETTKTKEEAKATADSIFKLV 386
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGS 345
++ K K+ ++A E S GS + + D F+ + I
Sbjct: 387 KNNKT--KYAEVANEINTDGSKGKDGSIGWTRLTTYNPLGFDPDFANFLFFNDKGSIDVV 444
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
H+ I V I ++ + +E E G +++
Sbjct: 445 LTKFGYHIIRIDDKKNVDTAYKVATIERKIEPSVKTEDDIFRNASNFEVALDGKDFLDVA 504
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + V + + + + ++ F +D + DG Y+
Sbjct: 505 KENNLKVNPVTSV-----KELDENIPGVGAERPIVRWAFEEDTKVGNTKRFETKDG-YVI 558
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
VQ+ A +E+ + + K A+ + + N D
Sbjct: 559 VQVTAKNEAGLMNVEDASVTALPEIRKQKKAKMIKDRVNA---------TTLEDFAAAEN 609
Query: 526 ASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ T IN + G + F ++V +
Sbjct: 610 QQVRTALAINMKNPTVSGVGLEPIVVGHAFGLNEGETSGLIAGTKGVFMVQPTKKTPAVE 669
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
++ F + ++ + + LK + +
Sbjct: 670 LENYQSFANQVSSEKLNAVNTRLYNALKEAADIEDNRA 707
>gi|317180180|dbj|BAJ57966.1| hypothetical protein HPF32_0384 [Helicobacter pylori F32]
Length = 487
Score = 99 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 61/396 (15%), Positives = 141/396 (35%), Gaps = 18/396 (4%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSGS---AAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAIHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + K+L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISTLFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYVALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+F E K + ++ K ++ K
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEK 383
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/262 (11%), Positives = 79/262 (30%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R +
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYVALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + + +GK+ + N G ++
Sbjct: 355 NFNEAKSALKTRLTQEKTLTALQTLAKEKLKNF--KGKSVGYVSPNFGGTINE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLT 595
N+ I+ +F+ + G V++++T E+ +++ L
Sbjct: 406 --LNQEESAKFINALFNRQEKKGFIAI---GDKVVLYQITEQNFNHSFSAEESQYMQRLV 460
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 461 NNTKTDFFDKALIEELKKRYKI 482
>gi|297380175|gb|ADI35062.1| Hypothetical protein HPV225_1003 [Helicobacter pylori v225d]
Length = 517
Score = 99 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 61/396 (15%), Positives = 143/396 (36%), Gaps = 18/396 (4%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 31 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 87
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 88 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 147
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 148 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 206
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 207 EQSSLSLWAKL----QDKLDILILSPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 262
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 263 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 318
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 319 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 377
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+F E K + ++ K ++ K
Sbjct: 378 QTKDELQNFNEAKSVLKTRLTQEKTLTALQTLAKEK 413
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/260 (12%), Positives = 77/260 (29%), Gaps = 18/260 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I
Sbjct: 270 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA 329
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 330 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQTKDELQ 384
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 385 NFNEAKSVLKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE------- 435
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
N+ I+ +F+ E I N + N E+ +++ L
Sbjct: 436 --LNQEESAKFINALFN-RQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLANN 492
Query: 598 MNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 493 TKTDFFDKALIEELKKRYKI 512
>gi|308062290|gb|ADO04178.1| conserved hypothetical secreted protein [Helicobacter pylori Cuz20]
Length = 487
Score = 99 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/477 (13%), Positives = 162/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ + EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PNLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + ++
Sbjct: 348 QAKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDFKGKSVGYVSPNFGGTINELS 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINALFNRQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 32/260 (12%), Positives = 77/260 (29%), Gaps = 18/260 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I
Sbjct: 240 KPNLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQAKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
++ I+ +F+ E I N + N E+ +++ L
Sbjct: 406 --LSQEESAKFINALFN-RQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNN 462
Query: 598 MNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 463 TKTDFFDKALIEELKKRYKI 482
>gi|254779571|ref|YP_003057677.1| putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
[Helicobacter pylori B38]
gi|254001483|emb|CAX29488.1| Putative pedidyl-prolyl cis-trans ismerase D(PPIase D) (Rotamase D)
[Helicobacter pylori B38]
Length = 487
Score = 99 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 67/477 (14%), Positives = 161/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + K+L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVEKLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYVALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + +S
Sbjct: 348 QIKDELQNFNEAKSALKTRLTQEKTLMALQALAKEKLKDFKGKSVGYVSPNFGGTISELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINALFNRQEKKGFITIGDKMVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 32/260 (12%), Positives = 78/260 (30%), Gaps = 18/260 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R +
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYVALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ I +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQIKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKSALKTRLTQEKTLMALQALAKEKLKDF--KGKSVGYVSPNFGGTISE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
N+ I+ +F+ E I + + N E+ +++ L
Sbjct: 406 --LNQEESAKFINALFN-RQEKKGFITIGDKMVLYQITEQNFNHSFSAEESQYMQRLVNN 462
Query: 598 MNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 463 TKTDFFDKALIEELKKRYKI 482
>gi|110597632|ref|ZP_01385917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
ferrooxidans DSM 13031]
gi|110340752|gb|EAT59229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
ferrooxidans DSM 13031]
Length = 702
Score = 99 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/637 (10%), Positives = 174/637 (27%), Gaps = 68/637 (10%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
+ +R + + + + WG++ F+ ++ + + V + + +
Sbjct: 4 MSNLRDKT-HIILYTLMAAFLALIVFEWGMNFTGFTT-KANQAGKINGKTVSMAEYDEVY 61
Query: 61 KQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
K + G + E + L ++ + +V L+Q E + V +
Sbjct: 62 KNFTANYRRANPGAELTPE--AELSLREQAWNTVVDQTLLEQQFEKFSISLQDQEVVEAL 119
Query: 120 ARSPLFHGKDNKF--------SHDVFVSRLA--REGINEKEYIDHYTKMLSRTDVVGMFV 169
S F S R + + L ++
Sbjct: 120 ESSAPPQVIRQNFSDPATGALDRKKLDSARRDPRNKELWLQIEKIVRQELKVNKLIRALQ 179
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNYRAP 227
+ +D F S +I + A ++ + ++++ +K+ +R
Sbjct: 180 TLDHVTGREVDDIINRQFTRFSASFIPVPVSFAGADSNFPVKEEEIKKYYDDHKELFRQA 239
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
++ ++ F + K EL++ +
Sbjct: 240 PSRKADFVFFPLTPSAKDSLAVRTELESIRAEFS-------------------------- 273
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ Q + I++ ++ P S K G +
Sbjct: 274 ---APTVNDSDYVKVQSDRPTGINVTYNRSDFSPAAGATLFNPSNLKPGTIVGPLADRGE 330
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y + + + S + + +KV+E + + L G + ++R+
Sbjct: 331 YRMIKIKQVTTSRQPVARASHILLRFNPASRAEVQKVRELSLLISQQLQAGVPFESLARK 390
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
G + + V P + V G ++ +
Sbjct: 391 YSADPGSALNGGDIGWFSRERMVP-------EFAAAVFNARPGAVIGPVQTQFGLHII-K 442
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + E V ++ ++V++ L + S + K F
Sbjct: 443 VTGFDQSAVVCSEIVRN-IRPSTESVESVRR-----QALAFQASAKEKGFDQTAAAAKLR 496
Query: 528 LLTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---- 582
+ T + + + D ++ F + +E + V ++T
Sbjct: 497 IDKTGEFGKHMAVAQIGYSDKVTAFAFKASEGDLSDL-LETEKGFYVMRLTEKNDTGYRL 555
Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K + + L + L+ ++ + +++
Sbjct: 556 LDQDMKSRITAELVREKKGAALEKKLSAMAKGAGMSI 592
>gi|109947212|ref|YP_664440.1| hypothetical protein Hac_0634 [Helicobacter acinonychis str.
Sheeba]
gi|109714433|emb|CAJ99441.1| conserved hypothetical secreted protein [Helicobacter acinonychis
str. Sheeba]
Length = 487
Score = 99 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/477 (13%), Positives = 160/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKI---FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I + + + WG S++ VG+ +
Sbjct: 1 MIEWMQNHRKYLVVTIWISAIAFIAAGMIGWGQYSFSL---DSNSAAKVGKINISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + E+ R++ L+K L+ L++ A L D+GL A +
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEEQIRAMHLEKSALNILINQALLRNLALDLGLGATKQEI 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQNNYRPKLFEESVERLLILQKISTLFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILKPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD + ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDANLEK----SDLKELEEYYNKNKASYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++G + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKGNTQNYTTQD-FEENNSPYTTEITQKLTTLKPLEILKPEPFKDGFIVVQLVS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F VK + ++ K ++ K + + ++
Sbjct: 348 QTKDELQNFDGVKSALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFAGTINELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ V + + +H + + YM + +
Sbjct: 408 QEESAKFINTIFNRQEKKGVVIIGDKVVLYQIIEQNFNHPFSTEESQYMDRLVNNTK 464
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 30/262 (11%), Positives = 80/262 (30%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
S +E + + + + + +E + R I
Sbjct: 240 KSDLKELEEYYNKNKASYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKGNT 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTTEITQKLTTLKPLEILK-----PEPFKDGFIVVQLVSQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ V + +K KT + + A + + ++ +GK+ + N ++
Sbjct: 355 NFDGVKSALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFAGTINE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLT 595
N+ I+ +F+ + G V++++ E+ +++ L
Sbjct: 406 --LNQEESAKFINTIFNRQEKKGVVII---GDKVVLYQIIEQNFNHPFSTEESQYMDRLV 460
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D +++ LK +Y +
Sbjct: 461 NNTKTDFFDKALMEELKKRYKI 482
>gi|59801181|ref|YP_207893.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
FA 1090]
gi|240115723|ref|ZP_04729785.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
PID18]
gi|268601403|ref|ZP_06135570.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
gi|59718076|gb|AAW89481.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
FA 1090]
gi|268585534|gb|EEZ50210.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
Length = 512
Score = 99 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 64/415 (15%), Positives = 153/415 (36%), Gaps = 21/415 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISEHSINNAM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E G + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE----QADGGSP----------WRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KFSH + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ K +S E++ +E+ + + E + + + + +++ K +
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPAHEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ + SL +K V ++ S + V
Sbjct: 283 GDDAFNHPS-SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLK--KKH 339
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ + A +R + E+ ++ ++ + E ++ + + ++
Sbjct: 340 NSEVLTINSETAWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEV 394
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/342 (10%), Positives = 86/342 (25%), Gaps = 6/342 (1%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
E + + S + F L + +G + D
Sbjct: 49 EHSINNAMQNEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFH 108
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G F+ + + + ++ ++ + E RL
Sbjct: 109 DANGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLT 168
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + E I + D K+ +P +L + D K
Sbjct: 169 QVNRTI-RSHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADK 227
Query: 453 DHTVALPDGSYMWVQIKES-IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ ++ E+ V+ + K K + + +L +
Sbjct: 228 QTVSETEVKNAFEERVARLPAHEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAF 287
Query: 512 KEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIEN 567
+ + KN G + T ++R D + + I+ VFS + N
Sbjct: 288 NHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTIN 347
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ V + + ++ + Q + +
Sbjct: 348 SETAWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAEN 389
>gi|254458909|ref|ZP_05072332.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
gi|207084180|gb|EDZ61469.1| conserved hypothetical protein [Campylobacterales bacterium GD 1]
Length = 488
Score = 99 bits (246), Expect = 1e-18, Method: Composition-based stats.
Identities = 66/427 (15%), Positives = 148/427 (34%), Gaps = 19/427 (4%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ +++ + + I++ + F+ WG + V VG +V
Sbjct: 1 MITWMQRHKKYLIITIWISTIAFVGAGFVGWGQYSY---GDKAGAVAKVGNVEVTMGELQ 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++ ++ + E+A+S GL + L L A + LE + +
Sbjct: 58 KTYSNLYAQYNKMFQGNFDEEKAKSFGLQSQALKQLTDQALIINLALSYDLEINDAELLN 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
E+ F KD F+ +++ L++ ++ KEY K L ++ + +
Sbjct: 118 ELKTQEYFF-KDGVFNKEIYKQVLSQNNMSIKEYEVSVKKQL----LIQKTLKLLPVDVS 172
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ N + D S+A L ++E + N+ + + +I
Sbjct: 173 KNELDIISSVLNIADKINYKILSDEKINIDTSDAALKPFWEARQQNFMSEVTYEVKFIKQ 232
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ ++ Y NK + E + + + + ++ K
Sbjct: 233 SRVSNKY----EESQINEHYAANKTHFKDVEGKLLPLEGARSSVINELDAKATKDEALRG 288
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP---VIHGSFGYVIAHVS 354
+A ++GK SD+ + + + + + + ++K +P I + Y +
Sbjct: 289 YIAYKKGKLASDVKVSTTTISASNNPYNENVLEQISKLSITSPYLKPILVNDEYFTFELL 348
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ S SF+E KKD+ + K+ E + GT+ D I+ + +
Sbjct: 349 KVNSSKAKSFEEAKKDVLPMFVQEEKKNKLLELA-KNSVATFTGTTTDFITNEDAAKITN 407
Query: 415 LPLVDFA 421
+ D
Sbjct: 408 MEPADAN 414
>gi|317182276|dbj|BAJ60060.1| hypothetical protein HPF57_0986 [Helicobacter pylori F57]
Length = 487
Score = 99.5 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/477 (13%), Positives = 161/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDIKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + ++
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDFKGKSVGYVSPNFGGTINELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINALFNRQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 33/260 (12%), Positives = 77/260 (29%), Gaps = 18/260 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
N+ I+ +F+ E I N + N E+ +++ L
Sbjct: 406 --LNQEESAKFINALFN-RQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNN 462
Query: 598 MNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 463 TKTDFFDKALIEELKKRYKI 482
>gi|240014107|ref|ZP_04721020.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
DGI18]
gi|240121669|ref|ZP_04734631.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
PID24-1]
gi|254493775|ref|ZP_05106946.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
gi|226512815|gb|EEH62160.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
Length = 512
Score = 99.5 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 64/415 (15%), Positives = 153/415 (36%), Gaps = 21/415 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I K A++ L ++ + F+ +G+S S G+ +V VG +K+ S N+
Sbjct: 1 MFHSIEKYRTP--AQVLLGLIALTFVGFGVSTV--SHPGADYIVQVGDEKISEHSINNAM 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ E G + +L+ A L Q + +G+ ++ I
Sbjct: 57 QNE----QADGGSP----------WRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIV 102
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P FH + KFSH + L++ ++E ++++ + ++V + G+ + +
Sbjct: 103 DDPNFHDANGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAE 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Q R NR++ N A S A L +++ K +Y P+ ++ Y+ ++
Sbjct: 163 QLIRLTQVNRTIRSHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLK 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ K +S E++ +E+ + + E + + + + +++ K +
Sbjct: 223 DFADKQTVSETEVKNAFEERVARLPAHEAKPSFEQEKAAVENELKMKKAVADFNKAKEKL 282
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ + SL +K V ++ S + V
Sbjct: 283 GDDAFNHPS-SLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLK--KKH 339
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ + A +R + E+ ++ ++ + E ++ + + ++
Sbjct: 340 NSEVLTINSETAWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEV 394
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/353 (10%), Positives = 89/353 (25%), Gaps = 6/353 (1%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
E + + S + F L + +G + D
Sbjct: 49 EHSINNAMQNEQADGGSPWRDAVFQSLLQRAYLKQGAKLMGISVSSEQIKQMIVDDPNFH 108
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G F+ + + + ++ ++ + E RL
Sbjct: 109 DANGKFSHALLSQYLSQRHMSEDQFVEEIRDQFALQNLVSLVQNGVLVGDAQAEQLIRLT 168
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + E I + D K+ +P +L + D K
Sbjct: 169 QVNRTI-RSHTFNPDEFIAQVKASEADLQKFYNANKKDYLLPQAVKLEYVALNLKDFADK 227
Query: 453 DHTVALPDGSYMWVQIKES-IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ ++ E+ V+ + K K + + +L +
Sbjct: 228 QTVSETEVKNAFEERVARLPAHEAKPSFEQEKAAVENELKMKKAVADFNKAKEKLGDDAF 287
Query: 512 KEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFS---GPVEMVKCFPIEN 567
+ + KN G + T ++R D + + I+ VFS + N
Sbjct: 288 NHPSSLAEAAKNSGLKVETQETWLSRQDAQMSGMPENLINAVFSDDVLKKKHNSEVLTIN 347
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ V + + ++ + Q + + + ++
Sbjct: 348 SETAWVVRAKEVREEKNLLFEEAKDAVRQAYIRTEAAKLAENKAKEVLTQLNR 400
>gi|134302065|ref|YP_001122034.1| hypothetical protein FTW_1101 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134049842|gb|ABO46913.1| hypothetical protein FTW_1101 [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 476
Score = 99.5 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 71/506 (14%), Positives = 159/506 (31%), Gaps = 39/506 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ + I ++ + F+I G++ ++ + V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSRAYVAKVGDNEISSQQFQQYA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ A + + IL ++ + + + + I
Sbjct: 61 QS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIF 103
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P+F KD KFS + +A G + + + T + V ++
Sbjct: 104 TNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDTK 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY +
Sbjct: 163 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
K +IS DE++A Y+ +KE + + + ++ + +L++ ++ Q
Sbjct: 223 NFVLKNKISEDEIKAYYQAHKELFKDFDNNAKSTI-----QKIIQNRHALEQFNEYTQNI 277
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ + + G I D + V + F + I +
Sbjct: 278 DSIKYTKLEKQFGKAKTATIVDN----------NDTTISNVANSQFFINSDKYATITIAD 327
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+ + A K K +E+ + + S F
Sbjct: 328 NKLLVYQVDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSF 387
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+ A + ++ H +G ++ + P D+
Sbjct: 388 KQATINSDSQAFGKDFNDYVMFNSN-----NQYHDYKTDNGDIYIYKVTKIEPITDKT-T 441
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQL 506
+V + V +K + + Q+
Sbjct: 442 QVPSQVIDAYKQEELNFYLQVIKQQI 467
>gi|261839760|gb|ACX99525.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter pylori 52]
Length = 487
Score = 99.5 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 60/396 (15%), Positives = 141/396 (35%), Gaps = 18/396 (4%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSLDSGS---AAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIKKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+F E K + ++ K ++ K
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLIALQTLAKEK 383
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 34/260 (13%), Positives = 74/260 (28%), Gaps = 18/260 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++ NQ
Sbjct: 355 NFNEAKSALKTRLTQEKTLIALQTLAKEKLKDF--KGKSVGYVSPNFGGTINELNQEEST 412
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
N F E I N + N E+ +++ L
Sbjct: 413 KFINALFNRQ----------EKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMERLVNN 462
Query: 598 MNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 463 TKTDFFDKALIEELKKRYKI 482
>gi|290770008|gb|ADD61774.1| putative protein [uncultured organism]
Length = 712
Score = 99.5 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 69/615 (11%), Positives = 158/615 (25%), Gaps = 49/615 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + + F +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETISAQDFQALVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ ++ G S+ ++ + ++ V+ ++ E +GL + I
Sbjct: 61 EYTEVVKFSSGLNALSDE-QTNQIKDEVWRAYVNNKLIENEAEKLGLTVSKAELQAIIDA 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L K + +
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQMPAQYAEYYNSMYNFWSFVEKS 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V A D S+ +L
Sbjct: 180 LIQARLQEKYQALITKSLFSNPVEAEDAFNARVDQSDLLLAA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKK 292
+ + I I EL+ Y K KE++ + + ++ K+
Sbjct: 222 --VPYSSIVDSTIVIKESELKDAYNKKKEQFRQYVETRNIKYIDVQVTASPEDKADIQKE 279
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+++ E S+ + S + D+ D V G +
Sbjct: 280 VEEYTAQLAENPSDYSNFIRSTGSTQQYVDLFYTDKALPADVVARLDSVKVGGVYGPYYN 339
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
S+ + + Q R + + K L + +
Sbjct: 340 ASDNTINSFKKLASAAMPDSIQYRQIQVVAEDAAKTKTLADSIYTAIKGGADFAEIAKKY 399
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + + + + + + + + K
Sbjct: 400 GQTGEATWIS-SANYEGAQVDGDNLKYIAAITTLGQNELANLALGQANVILQVMNKKAVK 458
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGASLL 529
V + V+ ++E SKA ++ + ++ G LL
Sbjct: 459 D---------KYKVAVIKRPVEFSKETYSKAYNDFSQFIAANNTLDKLVANAEDAGYRLL 509
Query: 530 TTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQE 586
+ ++ + + F+ V + +V VTN +
Sbjct: 510 DRTDLYSSEHAIGGVKGTKEALRWAFAAKAGEVSGLYECGESDHMMVVAVTNIIPEGYRP 569
Query: 587 KDKFISYLTQMMNKD 601
L + +D
Sbjct: 570 LSMVQEQLRSEILRD 584
>gi|317011211|gb|ADU84958.1| hypothetical protein HPSA_04905 [Helicobacter pylori SouthAfrica7]
Length = 487
Score = 99.5 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 61/396 (15%), Positives = 144/396 (36%), Gaps = 18/396 (4%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S++ VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSNSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + E+ +++ L+K L+ L++ A L D+GL A +
Sbjct: 58 QEYRRLKDAYAESIPDFKELTEEQIKAMHLEKSALNILINQALLRNLALDLGLGATKQEI 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + K+L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQNHYRPKHFEESVEKLLIVQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILKPSDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD + ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDANLEK----SDLKELEEYYNKNKASYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++G + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKGNTQNYTAQD-FEENNSPYTTEITQKLTALKPLEILKPEPFKDGFIVVQLLS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
F K + ++ K ++ K
Sbjct: 348 QIKDELQDFDGAKSALKTRLTQEKTLTALQTLAKEK 383
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 32/262 (12%), Positives = 82/262 (31%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
S +E + + + + + +E + R I
Sbjct: 240 KSDLKELEEYYNKNKASYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKGNT 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ I +
Sbjct: 300 QNYTAQDFEENNSPYTTEITQKLTALKPLEILK-----PEPFKDGFIVVQLLSQIKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ + +K KT + + A + + ++ +GK+ + N G S+
Sbjct: 355 DFDGAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGSISE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYLT 595
++ I+ +F+ + G V++++T E+ +++ L
Sbjct: 406 --LSQEESAKFINALFNRQEKKGFVTI---GDKVVLYQITEQNFNHQFSAEESQYMERLV 460
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D +++ LK +Y +
Sbjct: 461 NNTKTDFFDKALMEELKKRYKI 482
>gi|328676007|gb|AEB28682.1| Peptidyl-prolyl cis-trans isomerase ppiD [Francisella cf. novicida
3523]
Length = 477
Score = 99.5 bits (245), Expect = 2e-18, Method: Composition-based stats.
Identities = 75/515 (14%), Positives = 161/515 (31%), Gaps = 40/515 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ + I ++ + F+I G++ ++ S V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ I + IL ++ + + + + I
Sbjct: 61 AQSATTDIQ-----------------KRAILSQMIDQYLILADAQRHNIVVSKLALQSAI 103
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+P+F KD KFS D +A G T+ + T + V ++
Sbjct: 104 FTNPMFFDKDGKFSADKLKQVVAYLG-GMDRLEQMLTQNIQATIIPKTIVDTSLVTDYDT 162
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Y N+ +DY ++ + PS L +++ +K+ Y P K ISY +
Sbjct: 163 KSLASIYSVNKYIDYFKVSPADFKSQIKPSQQDLQSYYDVHKNEYITPAQKTISYFIITK 222
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K +I DE+++ YE +KE + + T + ++ + +L++ ++ Q
Sbjct: 223 DNFVPKNKIGEDEIKSYYEAHKELFKDFDDNTKSTI-----QKIIQNRHALEQFNEYTQN 277
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + + LG I D + V + F S+I +
Sbjct: 278 VDSIKYAKLEKQLGKAKTATIVDN----------NDMTISNVANSQFFTNSDKYSSITIA 327
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + A K +E+ + + S
Sbjct: 328 DNQLLVYQVDNSTKATQQKLADIKDTISKAYIEQKSQQLALQQAQNLLNDLTSGKKIDKS 387
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
F + A + ++ H +G ++ + P D+
Sbjct: 388 FKQATINIDSQAFDKDFNNYVMFNSN-----NQYHDYKAANGDIYIYKVTKVEPITDKTT 442
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
V + V +K + + Q+ ++ + +
Sbjct: 443 R-VPSQVIDAYKQEELNFYLQVIKQQIPIQINYKN 476
>gi|53712369|ref|YP_098361.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
gi|253563594|ref|ZP_04841051.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
gi|52215234|dbj|BAD47827.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
gi|251947370|gb|EES87652.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
gi|301162075|emb|CBW21619.1| conserved hypothetical protein [Bacteroides fragilis 638R]
Length = 712
Score = 99.2 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 73/618 (11%), Positives = 176/618 (28%), Gaps = 55/618 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGETLSAQDYQNMVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ +I G + ++ + ++ + V+ +++ + +G+ + I
Sbjct: 61 EYTEVIKFSSGMS-SLNDEQTNQVKDEVWRSYVNNKLIEKEAKKLGITVSKAEIQSIINE 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ LA +K +
Sbjct: 120 GVNPLLQQTPFRNPQTGAFDKDMLKKFLADYSKMDKTKMPSQYVEYYEGMHKLWSFVEKT 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V A + S+ +L
Sbjct: 180 LIQSRLAEKYQALVTKALFSNPVEAQDAFDARVNQSDVLLAA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I + EL+ Y K KE++ + + + E +++
Sbjct: 222 --VPYSSIVDSTITVKESELKDLYNKKKEQFKQYVETRNIKYIDVQVTASAEDRAAIQ-- 277
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
Q + L+ + + KK + V+ I V
Sbjct: 278 ----QEVTDYTNQLATANGDYTTFIRSTGSEYPYVDLYYTKKAFPSDVVARMDSASIGQV 333
Query: 354 SNIK----PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ SF+ + K A + + ED + + + +
Sbjct: 334 YGPYYNAGDNTINSFKVLSKVAAADSVQFRQIQVYTEDAAKTKALADSIYTAIKGGADFT 393
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
++ + A + L F + +++ VAL G+ + +Q+
Sbjct: 394 ALAKKYGQTGESNWISSANYENAQVDGDNLKFISTINNLGVNELSNVALGQGN-IILQVT 452
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL---GA 526
+ +D V + V+ ++E +KA ++ + N G
Sbjct: 453 DKKAVKD------KYKVAVIKRAVEFSKETYNKAYNEFSQFIAANPTVDKVAANAEESGY 506
Query: 527 SLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGP 583
LL N + ++ + + F+ V + +V + +
Sbjct: 507 KLLERNDLYSSEHGIGGIRGTKEALKWAFAAKPGEVSGLYECGESDRMLVVGLVSVIEEG 566
Query: 584 VQEKDKFISYLTQMMNKD 601
+ + L + +D
Sbjct: 567 YRPLAQVQDQLRAEIIRD 584
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/247 (10%), Positives = 65/247 (26%), Gaps = 5/247 (2%)
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ + + E + Y +F+A ++D+++ + L ++ + I
Sbjct: 467 KRAVEFSKETYNKAYNEFSQFIAANPTVDKVAANAEESGYKL--LERNDLYSSEHGIGGI 524
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
++ L F + V + I R L +V ++ +
Sbjct: 525 RGTKEALKWAFAAKPGEVSGLYECGESDRMLVVGLVSVIEEGYRPLAQVQDQLRAEIIRD 584
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
K AE++ + + + + S+ +
Sbjct: 585 KKAEKIMADMKAANATTIAQYTSM---ANAVSDSVKHVTFAAPAYVAALRSSEPLVGAYA 641
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
S PI+ V +V + + M+ L + L +
Sbjct: 642 SVSDINKLSAPIKGNGGVFVLQVYAKDKLNETFDAQSEEATLENMHARLASRFMNDLYLK 701
Query: 614 YSVTVHD 620
V
Sbjct: 702 GDVKDKR 708
>gi|317178673|dbj|BAJ56461.1| hypothetical protein HPF30_0364 [Helicobacter pylori F30]
Length = 487
Score = 99.2 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 64/477 (13%), Positives = 160/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGTTKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEKYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + ++
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDFKGKSVGYVSPNFGGTINELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINALFNRQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 32/260 (12%), Positives = 77/260 (29%), Gaps = 18/260 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
++ + + + + + +E + R I
Sbjct: 240 KPDLKELEKYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
N+ I+ +F+ E I N + N E+ +++ L
Sbjct: 406 --LNQEESAKFINALFN-RQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNN 462
Query: 598 MNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 463 TKTDFFDKALIEELKKRYKI 482
>gi|167765104|ref|ZP_02437217.1| hypothetical protein BACSTE_03490 [Bacteroides stercoris ATCC
43183]
gi|167696732|gb|EDS13311.1| hypothetical protein BACSTE_03490 [Bacteroides stercoris ATCC
43183]
Length = 712
Score = 99.2 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 69/615 (11%), Positives = 158/615 (25%), Gaps = 49/615 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + + F +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETISAQDFQALVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ ++ G S+ ++ + ++ V+ ++ E +GL + I
Sbjct: 61 EYTEVVKFSSGLNALSDE-QTNQIKDEVWRAYVNNKLIENEAEKLGLTVSKAELQAIIDA 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L K + +
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQMPAQYAEYYNSMYNFWSFVEKS 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V A D S+ +L
Sbjct: 180 LIQARLQEKYQALITKSLFSNPVEAEDAFNARVDQSDLLLAA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKK 292
+ + I I EL+ Y K KE++ + + ++ K+
Sbjct: 222 --VPYSSIVDSTIVIKESELKDAYNKKKEQFRQYVETRNIKYIDVQVTASPEDKADIQKE 279
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+++ E S+ + S + D+ D V G +
Sbjct: 280 VEEYTVQLAENPSDYSNFIRSTGSTQQYVDLFYTDKALPADVVARLDSVKVGGVYGPYYN 339
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
S+ + + Q R + + K L + +
Sbjct: 340 ASDNTINSFKKLASAAMPDSIQYRQIQVVAEDAAKTKTLADSIYTAIKGGADFAEIAKKY 399
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + + + + + + + + K
Sbjct: 400 GQTGEATWIS-SANYEGAQVDGDNLKYIAAITTLGQNELANLALGQANVILQVMNKKAVK 458
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGASLL 529
V + V+ ++E SKA ++ + ++ G LL
Sbjct: 459 D---------KYKVAVIKRPVEFSKETYSKAYNDFSQFIAANNTLDKLVANAEDAGYRLL 509
Query: 530 TTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQE 586
+ ++ + + F+ V + +V VTN +
Sbjct: 510 DRTDLYSSEHAIGGVKGTKEALRWAFAAKAGEVSGLYECGESDHMMVVAVTNIIPEGYRP 569
Query: 587 KDKFISYLTQMMNKD 601
L + +D
Sbjct: 570 LSMVQEQLRSEILRD 584
>gi|308063803|gb|ADO05690.1| conserved hypothetical secreted protein [Helicobacter pylori
Sat464]
Length = 487
Score = 99.2 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 65/477 (13%), Positives = 162/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ + EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PNLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLVS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + ++
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQILAKEKLKDFKGKSVGYVSPNFGGTINELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINALFNRQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 33/260 (12%), Positives = 76/260 (29%), Gaps = 18/260 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I
Sbjct: 240 KPNLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLVSQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKSALKTRLTQEKTLTALQILAKEKLKDF--KGKSVGYVSPNFGGTINE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
N+ I+ +F+ E I N + N E+ +++ L
Sbjct: 406 --LNQEESAKFINALFN-RQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNN 462
Query: 598 MNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 463 TKTDFFDKALIEELKKRYKI 482
>gi|60680538|ref|YP_210682.1| hypothetical protein BF0994 [Bacteroides fragilis NCTC 9343]
gi|60491972|emb|CAH06733.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
Length = 712
Score = 99.2 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 73/618 (11%), Positives = 176/618 (28%), Gaps = 55/618 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGETLSAQDYQNMVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ +I G + ++ + ++ + V+ +++ + +G+ + I
Sbjct: 61 EYTEVIKFSSGMS-SLNDEQTNQVKDEVWRSYVNNKLIEKEAKKLGITVSKAEIQSIINE 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ LA +K +
Sbjct: 120 GVNPLLQQTPFRNPQTGAFDKDMLKKFLADYSKMDKTKMPSQYVEYYEGMHKLWSFVEKT 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V A + S+ +L
Sbjct: 180 LIQSRLAEKYQALVTKALFSNPVEAQDAFDARVNQSDVLLAA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I + EL+ Y K KE++ + + + E +++
Sbjct: 222 --VPYSSIVDSTITVKESELKDLYNKKKEQFKQYVETRNIKYIDVQVIASAEDRAAIQ-- 277
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
Q + L+ + + KK + V+ I V
Sbjct: 278 ----QEVTDYTNQLATANGDYTTFIRSTGSEYPYVDLYYTKKAFPSDVVARMDSASIGQV 333
Query: 354 SNIK----PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ SF+ + K A + + ED + + + +
Sbjct: 334 YGPYYNAGDNTINSFKVLSKVAAADSVQFRQIQVYTEDAAKTKALADSIYTAIKGGADFT 393
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
++ + A + L F + +++ VAL G+ + +Q+
Sbjct: 394 ALAKKYGQTGESNWISSANYENAQVDGDNLKFISTINNLGVNELSNVALGQGN-IILQVT 452
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL---GA 526
+ +D V + V+ ++E +KA ++ + N G
Sbjct: 453 DKKAVKD------KYKVAVIKRAVEFSKETYNKAYNEFSQFIAANPTVDKVAANAEESGY 506
Query: 527 SLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGP 583
LL N + ++ + + F+ V + +V + +
Sbjct: 507 KLLERNDLYSSEHGIGGIRGTKEALKWAFAAKPGEVSGLYECGESDRMLVVGLVSVIEEG 566
Query: 584 VQEKDKFISYLTQMMNKD 601
+ + L + +D
Sbjct: 567 YRPLAQVQDQLRAEIIRD 584
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/247 (10%), Positives = 65/247 (26%), Gaps = 5/247 (2%)
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ + + E + Y +F+A ++D+++ + L ++ + I
Sbjct: 467 KRAVEFSKETYNKAYNEFSQFIAANPTVDKVAANAEESGYKL--LERNDLYSSEHGIGGI 524
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
++ L F + V + I R L +V ++ +
Sbjct: 525 RGTKEALKWAFAAKPGEVSGLYECGESDRMLVVGLVSVIEEGYRPLAQVQDQLRAEIIRD 584
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
K AE++ + + + + S+ +
Sbjct: 585 KKAEKIMADMKAANATTIAQYTSM---ANAVSDSVKHVTFAAPAYVAALRSSEPLVGAYA 641
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
S PI+ V +V + + M+ L + L +
Sbjct: 642 SVSDINKLSAPIKGNGGVFVLQVYAKDKLNETFDAQSEEATLENMHARLASRFMNDLYLK 701
Query: 614 YSVTVHD 620
V
Sbjct: 702 GDVKDKR 708
>gi|149194584|ref|ZP_01871680.1| hypothetical protein CMTB2_01034 [Caminibacter mediatlanticus TB-2]
gi|149135328|gb|EDM23808.1| hypothetical protein CMTB2_01034 [Caminibacter mediatlanticus TB-2]
Length = 482
Score = 99.2 bits (244), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/409 (12%), Positives = 136/409 (33%), Gaps = 22/409 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E ++ + V I++ + + +ST+ V ++ + N++
Sbjct: 1 MIEWMQTHRKWLVITIWIATIAFVGAGFVGWGQFQFGKKTSTIAKVKDTEITIQDWQNAY 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++Q++G ++ A+ +GL K+ LD + L Q+ +D+GL + +I
Sbjct: 61 NNLFDRVNQQLGGKLDEATAKKLGLQKEALDIAIQQGILRQYAKDLGLYVTDNDIAKKIL 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ + + L G K++ ++ K L ++ + +
Sbjct: 121 EVFK--------NKQNYENYLKNTGQKAKDFENNLRKQLLVEKLLKY----LNLKPQKTE 168
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + + D + +++EK K+ Y + + +
Sbjct: 169 IMTIASALYNADNLDIKVINKNNIKVDVDENEIKKYWEKNKNKYLSQNQYK-----IMIE 223
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ ++S +EL+ Y +NK Y + + +++ + + L K +
Sbjct: 224 TIPLEGDVSEEELKKYYNENKLNYKNEKG----EILSFEKAKNQVKIDYLAHKLKKKAII 279
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ S + + + D + L G + Y+ A +
Sbjct: 280 AYKNLKNSKGNYKIITVNENNKLIPFDKMQILKNNGYL-KPFVYNQQYITAKLIEELKPT 338
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ F++VK + +S+K+ E + +
Sbjct: 339 PLPFEKVKNIVIKDYINEMSSKKLIEIANKALQNFKGKNIGYVTKYDFN 387
>gi|332673819|gb|AEE70636.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 83]
Length = 487
Score = 98.8 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 65/477 (13%), Positives = 162/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFDEELYKNILKQSHYRPKHFEESVERLLILQKISTLFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ + EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PNLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + ++
Sbjct: 348 QTKDELQNFNEAKNALKTRLTQEKTLIALQTLAKEKLKDFKGKSVGYVSPNFGGTINELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINALFNRQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMERLVNNTK 464
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 33/260 (12%), Positives = 76/260 (29%), Gaps = 18/260 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I
Sbjct: 240 KPNLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKNALKTRLTQEKTLIALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
N+ I+ +F+ E I N + N E+ +++ L
Sbjct: 406 --LNQEESAKFINALFN-RQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMERLVNN 462
Query: 598 MNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 463 TKTDFFDKALIEELKKRYKI 482
>gi|298372736|ref|ZP_06982726.1| peptidyl-prolyl cis-trans isomerase [Bacteroidetes oral taxon 274
str. F0058]
gi|298275640|gb|EFI17191.1| peptidyl-prolyl cis-trans isomerase [Bacteroidetes oral taxon 274
str. F0058]
Length = 702
Score = 98.8 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 83/621 (13%), Positives = 191/621 (30%), Gaps = 47/621 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR + I + V + F++ + + F + V S+ KV ++ F+ S
Sbjct: 4 LGRIRNH--GVLLLIVIGVALLIFIVTDFVNNGSTFFREQKANVGSIDGDKVKYNDFLAS 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
Q + G ++ + S + +++ + +V +++ +IG+ + I
Sbjct: 62 LNQMQDFYKVERGQNIDDQM--SEQIRQEVWNQIVMRQVVEKDARNIGMGVSKQELSDLI 119
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
S + + R E +++ G + +N
Sbjct: 120 ------------MSKNPSPLIMMRPVFQNPETGMFDPNIVANFIKELESADGNKNANPEQ 167
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ Y++ + + + V ++ N + +
Sbjct: 168 VVLMKNYWKFIETNVKFGSLFEKYNTLLTKSLVTNTKEAQFAYNNSKYSVDVLYAMKPYF 227
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK---- 295
+ +++++ E++A Y+K KE++ ++ +VFP + ++ K+ +
Sbjct: 228 TIADSTVKVADSEVEALYKKKKEQFKQDPYVDIDFVVFPIKPSKEDIDAVRKQIETAKVG 287
Query: 296 ----FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
L + SD+ S A +G + + IA
Sbjct: 288 FAAVNDSLLTDTVNFNSDVPYRDVFLAQGDIPSDLRDFAFSADRGVVFGPVFVDNTFKIA 347
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
V + K + ++ E E K + + + +
Sbjct: 348 KVVDTKQMP----------DSVKLSFIAIQEATAEATKAKVDSVLGLAKQTPFATLAQQY 397
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
S D G ++V P + + +++ ++ + ++V + +
Sbjct: 398 SADKQSGSRGGDIGWVRQVTLSPELLRKVSAAA-----INEPFVMSQGSAASIFVVTERT 452
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + KL + +V + T ++ +A Q G +F K ++
Sbjct: 453 KPVKMVKLAVIERNVA---TSNGTQAKIFQEAKQFAGLLGGNGSDFDKKAKEKNYQVIPA 509
Query: 532 NQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
N I+R I F V E G + VV V + D+
Sbjct: 510 NTIDRNFPRLLNIPETRQVIRWAFDSKVGAT-SDVFECGDNLVVATVKRMNKEGYKTLDE 568
Query: 590 FISYLTQMMNKDLLDSVIAYL 610
L + KD ++ L
Sbjct: 569 VKPQLLSELRKDKKFDMMKGL 589
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 62/470 (13%), Positives = 135/470 (28%), Gaps = 20/470 (4%)
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
Y + V FV + A R E V + +N+ + + ++
Sbjct: 245 YKKKKEQFKQDPYVDIDFVVFPIKPSKEDIDAVRKQIETAKVGFAAVNDSLLTDTVNFNS 304
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
V + + + + V ++ + + K
Sbjct: 305 DVPYRDVFLAQGDIPSDLRDFAFSADRGVVFGPVFVDNTFKIAKVVDTKQMPDSVKLSFI 364
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
+++ K ++ L K F LA++ S G + +
Sbjct: 365 AIQEATAEATKAKVDSVLGLAKQTPFATLAQQYSADKQSGSRGGDIGWVRQVTLSPELLR 424
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
++ P + V + + + ++ +E +
Sbjct: 425 KVSAAAINEPFVMSQGSAASIFVVTERTKPVKMVKLAVIERNVATSNGTQAKIFQEAKQF 484
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
G+ D+ ++ + I +D + IP Q++ F
Sbjct: 485 AGLLGGNGSDFDKKAKEKNYQVIPANTIDR-----NFPRLLNIPETRQVIRWAFDSKVGA 539
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
+ D D + +K + L+EV + + + K + + +
Sbjct: 540 TSD-VFECGDN-LVVATVKRMNKEGYKTLDEVKPQLLSELRKDKKFDMM---------KG 588
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK--CFPIENG 568
GK + ++ G S+ T + N G+D + + + P V P++
Sbjct: 589 LFAGKTIDRL-RDEGLSVDTVKGLTFASNSAGSLGFDA-AMIANAPFAEVNKLSAPMKGN 646
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ VF+V + P K + Y+ N L V+ LK Y V
Sbjct: 647 IGAFVFQVLSKTENPEPFDLKQMKYVIGQQNSGLFYYVLEALKKAYKVKD 696
>gi|320161645|ref|YP_004174870.1| putative peptidylprolyl isomerase [Anaerolinea thermophila UNI-1]
gi|319995499|dbj|BAJ64270.1| putative peptidylprolyl isomerase [Anaerolinea thermophila UNI-1]
Length = 438
Score = 98.8 bits (243), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/417 (11%), Positives = 120/417 (28%), Gaps = 37/417 (8%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ +++ + +++G+ D + + V VG +K+ F K + Q+
Sbjct: 30 LLGTAIVLIAVIGLIVYGILDQSV-LKQNRAVAQVGNEKITVKEFQTEAKFWRYLQVQQY 88
Query: 72 G----------------FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ + A + K++LD ++ A + Q G+ +
Sbjct: 89 NNLASNPLLVQFYGSYLQELETSLADPQTIGKQVLDAMIEDALVAQEAAKRGITVSEEEI 148
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
E+ + F +++ + + T + +
Sbjct: 149 DKEMQEAFGF-----------YINGTPTPTLTATPFATATLTTQQLTWLPPTDTPEPTAT 197
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ A A P+ + ++ +
Sbjct: 198 PEPATPTPEVTPTPQPTATPTPEGPTPTATASPTPLPTATPYTLEGYKQTYSDFLAKVQV 257
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKKGK 294
+ + + E + ++ ++ A E L KG+
Sbjct: 258 YGYDEAHLRDYIKRLILKRKLADALSADLPREEEKVWARHILVETEETAKEVLDRLNKGE 317
Query: 295 KFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+++LA E K S LG F K + D++ K G+ + + +FGY I
Sbjct: 318 DWVKLAAEYSKDTSNANKGGDLGWFGKGTMVK-EFEDAV-YALKVGEISQPVQTTFGYHI 375
Query: 351 AH--VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
++P F + K+ ++ S + + E ++ ++
Sbjct: 376 IQLLGREVRPLTDSEFNQKKQAAYDEWLTQAKSADTVKTFDLWMEVAPSVPAITPVA 432
>gi|195953257|ref|YP_002121547.1| hypothetical protein HY04AAS1_0882 [Hydrogenobaculum sp. Y04AAS1]
gi|195932869|gb|ACG57569.1| conserved hypothetical protein [Hydrogenobaculum sp. Y04AAS1]
Length = 436
Score = 98.4 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/227 (17%), Positives = 81/227 (35%), Gaps = 20/227 (8%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFI 57
M E IRK T+ I ++ F +W + + S + + + + F
Sbjct: 1 MFEFIRKHKETF--AILSGIVTAAFFLWNFAAGNITSLFHSSENCIAKANGDCISIADFR 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + + L ++IL++L+ L + + G V
Sbjct: 59 RV--------------AMGTNQQMTPILKQEILNSLIDDDLLYEQAKKEGFLVSDKEVAD 104
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I++ P F D KF+ D + + LA G + Y + K L+ S++
Sbjct: 105 IISQDPSFQV-DGKFNFDRYKAVLAEAGYTPETYESYIKKQLTIQKYTLFVTNASYVSDI 163
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
L+ A S +++ V P+ + ++ K+KD +
Sbjct: 164 ELNAANMINNTLLSGKAYIIDPNSVNINYTPTEQEIEDYYNKHKDEF 210
Score = 68.3 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/255 (10%), Positives = 80/255 (31%), Gaps = 7/255 (2%)
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
T+ + + + E + +S+ +K + ++ + +GK G +
Sbjct: 189 NINYTPTEQEIEDYYNKHKDEFKIVNPSSIIYWETTDKNKAREIYMALKSGKIPPGFKAF 248
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
+ V +P + + + Y++ + + A L + V +D
Sbjct: 249 DEKTMSKTFGAVVKALNPQNPVLVGNVGNNIYIFTY-QSTKNAAIMPLSQAKNQVIQDLI 307
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
K + A + + ++++ D +
Sbjct: 308 MEKKILALKDFAKNIYNNLKAKKPVSIKPVAFNNL------PLSKISTMVDIKSSDIVPM 361
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
V + +G +YV+ +V + + Q ++ L + L++ +I L+
Sbjct: 362 VTEKTPAFFGPYVSASGSAYVIIEVDSRSIKNQQNPEQTFVQLISLKANVLMNYLIKDLR 421
Query: 612 SQYSVTVHDNLIQRY 626
+ + ++ +L
Sbjct: 422 AHAKIDINKSLYNNL 436
>gi|146299175|ref|YP_001193766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium
johnsoniae UW101]
gi|146153593|gb|ABQ04447.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacterium
johnsoniae UW101]
Length = 699
Score = 98.4 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/526 (10%), Positives = 141/526 (26%), Gaps = 30/526 (5%)
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
L I+D ++ + + ++ D + +E + T
Sbjct: 196 ALYSSIKDSEVKISDSDIVDYMKKNEKKFKADETREIQYVLVEDKASKQDEADIKAKITA 255
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+LS + V G + F N + D + +A
Sbjct: 256 LLSGSVVYNAKTGKNDTLPGFRNATNIAEFVNANSDVPYDSTYVPKNALPAVDADKLFSL 315
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
K + + + S+ + + + E RT E+
Sbjct: 316 PAGAIYGPYVYGKYYAISKSLGFKAGVNAKASHILI---GYEGSQTPNQKEKRTKEEAKA 372
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
++ + + + + + LG F + + + G
Sbjct: 373 KAEEILAQVQSNPDSFMMLAFTSSDDSSAQQGGDLGYFGQGQMVKP--FNDFVFNNGIGK 430
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
++ FG+ + +++ + ++ K + ++A+ E A
Sbjct: 431 VG-LVETPFGFHVIKITDKQDGIRLATIAQKIEP------SEATSDKVFTLATKFEMEAA 483
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
++ + ++ + + ++ F K+
Sbjct: 484 DKDFAATAKELGLKVE-----GPVSAKAMDEQFGPLGAQRNIVRWAFDKETDKGDVKRFE 538
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
L + ++ Q K + + V+ K K AE + +K G +
Sbjct: 539 LANIGHVIAQYKGENKSGLVSVTMARPYVEPILKNKKKAEILKAKMT---------GSSI 589
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFF---GYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+ K+ G ++ + + + F+ + N YVV
Sbjct: 590 EAVAKSAGVAVQQAADVTLENPVLPGGVGQEPQVVGTAFALAANKLSAPIEGNTGVYVVK 649
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ K + ++++ + D ++ LK+ + +
Sbjct: 650 NIKTVKAPALTNHAEYVAKVKAQSASDAGR-ILPALKNNAKIEDNR 694
Score = 84.5 bits (206), Expect = 4e-14, Method: Composition-based stats.
Identities = 85/652 (13%), Positives = 176/652 (26%), Gaps = 72/652 (11%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L IR+ R+ + + + F+I L S V S+ + + F F
Sbjct: 4 LAKIRQ--RSALLIGVIALALFAFIIQDLIGKGTFSQSSKDVGSIDGKDISFEDFRVKVS 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+K G + S A ++ D VS A L + +GL + +
Sbjct: 62 NL-----EKSGQGITSTEAA-----NRVWDQEVSIALLSAQFDKLGLRVGEKHLIEVLKS 111
Query: 122 SPL------FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV---GGM 172
P F F F + D G+
Sbjct: 112 DPNIGKNPMFLNAAGVFDVVKFKDYFKANPEAAQYISDKEKDAELNAKFQIYNTLVKSGL 171
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
+ + Y + S++ + + +K + ++A E +
Sbjct: 172 YTTASEGKLKYEMEANKVNFAYAGALYSSIKDSEVKISDSDIVDYMKKNEKKFKADETRE 231
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
I Y+L + ++ ++ A L A
Sbjct: 232 IQYVLVEDKASKQDEADIKAKITAL------------------LSGSVVYNAKTGKNDTL 273
Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
G + E + SD+ S ++ G Y I+
Sbjct: 274 PGFRNATNIAEFVNANSDVPYDSTYVPKNALPAVDADKLFSLPAGAIYGPYVYGKYYAIS 333
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
K I ++ + ++ K + A S + +
Sbjct: 334 KSLGFKAG----VNAKASHILIGYEGSQTPNQKEKRTKEEAKAKAEEILAQVQSNPDSFM 389
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ D + G + F F ++ + K V P G + ++I +
Sbjct: 390 MLAFTSSDDSSAQQGGDLGYFGQGQMVKPFNDFVFNNGIGKVGLVETPFG-FHVIKITDK 448
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ + T+++V + A + E K+F K LG +
Sbjct: 449 QDGIRLATIAQKIE-----PSEATSDKVFTLATKF--EMEAADKDFAATAKELGLKVEGP 501
Query: 532 NQINRMDNENKFFG--YDGISQVF--SGPVEMVKCFPIENGLSYV----------VFKVT 577
MD + G + + F VK F + N + + VT
Sbjct: 502 VSAKAMDEQFGPLGAQRNIVRWAFDKETDKGDVKRFELANIGHVIAQYKGENKSGLVSVT 561
Query: 578 NSKV------GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
++ ++ + + +T + + S ++ VT+ + ++
Sbjct: 562 MARPYVEPILKNKKKAEILKAKMTGSSIEAVAKSAGVAVQQAADVTLENPVL 613
>gi|261838345|gb|ACX98111.1| pedidyl-prolyl cis-trans isomerase D [Helicobacter pylori 51]
Length = 487
Score = 98.4 bits (242), Expect = 3e-18, Method: Composition-based stats.
Identities = 65/477 (13%), Positives = 161/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIKKTSVFQ-KDGIFDEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNKEEMKKYYESHKKDFKKPTSFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANAQNYTTQD-FEENNSPYTAEITQKLAALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + ++
Sbjct: 348 QTKDELQNFNEAKNALKTRLTQEKTLMALQTLAKEKLKDFKGKSVGYVSPNFGGTINELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINALFNRQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 33/260 (12%), Positives = 76/260 (29%), Gaps = 18/260 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I
Sbjct: 240 KPDLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANA 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLAALKPLEILK-----PEPFKDGFIVVQLISQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKNALKTRLTQEKTLMALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
N+ I+ +F+ E I N + N E+ +++ L
Sbjct: 406 --LNQEESAKFINALFN-RQEKKGFIAINNKMVLYQITEQNFNHSFSAEESQYMQRLVNN 462
Query: 598 MNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 463 TKTDFFDKALIEELKKRYKI 482
>gi|189462485|ref|ZP_03011270.1| hypothetical protein BACCOP_03174 [Bacteroides coprocola DSM 17136]
gi|189430646|gb|EDU99630.1| hypothetical protein BACCOP_03174 [Bacteroides coprocola DSM 17136]
Length = 711
Score = 98.0 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 67/608 (11%), Positives = 167/608 (27%), Gaps = 40/608 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F+ L G V + +
Sbjct: 4 LQTIR--SKGPLLVIVIGLALFAFIAGDAWKILQPHQGKQDAGEVNGNTLSAQDYQKMVD 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ +I G + + + ++ + V+ + + +GL+ + I
Sbjct: 62 EFSEVIKLTNGLN-SLSEDQLTNIKDQVWNTYVTNELIAAEAKKLGLKVTDKELQAIIDE 120
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L +Y + + V G
Sbjct: 121 GTNPLLMQTPFRNPQTGAFDKDMLKKFL-------VDYANLDASKMPAQYVEYYQTMGNF 173
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
+ + E + A D N + +
Sbjct: 174 WKFVERTLKQSVLAEKYQNLIAKSLISNPVAAEDV-------------FNGHTAQSDLLL 220
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I +SND+++ YE+ KE + P + F + + +
Sbjct: 221 AGIPYSSISDSTITVSNDDIKKLYEEKKESFKQPVETRD--IKFIDVRVVPSEADRQEVQ 278
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
K+ + + + + +D + S + + ++ + + S V
Sbjct: 279 KEVTEYSSQLITTTNDYTAFIRSTGSVIPFADVPVNKTVLPSDVASRLDSTSVNEVYGPY 338
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
N +F+ + K A + + + + + + ++
Sbjct: 339 YNQADDSYNAFKIIAKTTAPDSIQFRQIQVYADTEAKTASLADSIYNALKEGADFAELAK 398
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
A A E F P+++ V + + + + +
Sbjct: 399 KYGQTGEANWVNAQSWEGAALDAENATFINKLISQPVNELANVKVGQANLILQVMNKKAM 458
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
K+ + V+ + +T +K +Q V + + +N + G SL +
Sbjct: 459 KDKYKVAVIKCPVEF---SKETYNNAYNKFSQFVAQ-NTTIENLEKNAEEAGYSLTPRSN 514
Query: 534 INRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
++ + + VF V + +V + +K
Sbjct: 515 FRSDEHYVGGVKSTREALKWVFDAKPGEVSPLYECGENDHLLVVALEAINPAGYVNINKV 574
Query: 591 ISYLTQMM 598
L +
Sbjct: 575 SDMLRSEV 582
Score = 53.7 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 42/334 (12%), Positives = 96/334 (28%), Gaps = 14/334 (4%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ +LK+G F +LA++ G++ + + S E + D+ + + ++
Sbjct: 384 YNALKEGADFAELAKKYGQTGEANWVNAQSWEG----AALDAENATFINKLISQPVNELA 439
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ + I + K +A + S++ + + E
Sbjct: 440 NVKVGQANLILQVMNKKAMKDKYKVAVIKCPVEFSKETYNNAYNKFSQFVAQNTTIEN-L 498
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ L + V + + L VF + + V
Sbjct: 499 EKNAEEAGYSLTPRSNFRSDEHYVGGVKSTREALKWVFDAKPGEVSPLYECGENDHLLVV 558
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV--SSKANQLVLEYSKEGKNFRDIGKNL 524
++ PA + +V ++ + K AE++ K + + D K++
Sbjct: 559 ALEAINPAGYVNINKVSDMLRSEVLRNKKAEQIMGQMKGFNSLAQVKGMKDAISDTVKHV 618
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
+ + R IS S PI+ + +V N +
Sbjct: 619 TFNAPAFISVTRAS-------EPAISAYASKTELNKVSAPIKGNAGVYMIQVYNQEKSTE 671
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ K M I L+ + +
Sbjct: 672 KFDAKKEETALSNMAARYAGQCIYELRDKAEIVD 705
>gi|115314710|ref|YP_763433.1| hypothetical protein FTH_0881 [Francisella tularensis subsp.
holarctica OSU18]
gi|156502314|ref|YP_001428379.1| hypothetical protein FTA_0947 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254369242|ref|ZP_04985254.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
gi|290953593|ref|ZP_06558214.1| peptidyl-prolyl cis-trans isomerase D [Francisella tularensis
subsp. holarctica URFT1]
gi|295313094|ref|ZP_06803784.1| peptidyl-prolyl cis-trans isomerase D [Francisella tularensis
subsp. holarctica URFT1]
gi|115129609|gb|ABI82796.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica OSU18]
gi|156252917|gb|ABU61423.1| hypothetical protein FTA_0947 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|157122192|gb|EDO66332.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 477
Score = 98.0 bits (241), Expect = 4e-18, Method: Composition-based stats.
Identities = 69/507 (13%), Positives = 148/507 (29%), Gaps = 40/507 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ + I ++ + F+I G++ ++ S V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A + + IL ++ + + + + I
Sbjct: 61 VQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+P+F KD KFS + +A G + + + T + V ++
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDT 162
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY +
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K +IS DE++A Y+ +KE + + + Q +
Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRYALEQFNEYTQNIDSIK 282
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ K + + V + F + I +
Sbjct: 283 YTKLEKQFGKA---------------KTATIVDNNDTTISNVANSQFFINSDKYATITIA 327
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + A K K +E+ + + S
Sbjct: 328 DNKLLVYQVDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKS 387
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
F + A + ++ H +G ++ + P D+
Sbjct: 388 FKQATINSDSQAFGKDFNDYVMFNSN-----NQYHDYKTDNGDIYIYKVTKIEPITDKT- 441
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQL 506
+V + V +K + + Q+
Sbjct: 442 TQVPSQVIDAYKQEELNFYLQVIKQQI 468
>gi|329956951|ref|ZP_08297519.1| hypothetical protein HMPREF9445_02394 [Bacteroides clarus YIT
12056]
gi|328523708|gb|EGF50800.1| hypothetical protein HMPREF9445_02394 [Bacteroides clarus YIT
12056]
Length = 712
Score = 98.0 bits (241), Expect = 5e-18, Method: Composition-based stats.
Identities = 66/615 (10%), Positives = 158/615 (25%), Gaps = 49/615 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + + F +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETISAQDFQALVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ ++ G S+ ++ + ++ V+ ++ E +GL + I
Sbjct: 61 EYTEVVKFSSGLNALSDE-QTNQIKDEVWRAYVNNKLIENEAEKLGLTVSKAELQAIIDA 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L K + +
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQMPAQYAEYYNSMYNFWAFVEKS 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V A D S+ +L
Sbjct: 180 LVQARLQEKYQALITKSLFSNPVEAEDAFNARVDQSDLLLAA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKK 292
+ + I I +L+ Y+K KE++ + + ++ K+
Sbjct: 222 --VPYSSIVDSTIVIKESDLKDAYDKKKEQFRQYVETRNIKYIDVQVTASPEDKADIQKE 279
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+++ E ++ + S + D+ D V G +
Sbjct: 280 VEEYTAQLAENPSDYANFVRSTGSTQQYVDLFYTDKALPADVVARLDSVKVGGVYGPYYN 339
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
S+ + + Q R + + K L + +
Sbjct: 340 ASDNTINSFKKLATAAMADSIQYRQIQVVAEDAAKTKTLADSIYTAIKGGADFAEIAKKY 399
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + + + + + + + + K
Sbjct: 400 GQTGEATWIS-SANYEGAQVDGDNLKYIAAITTLGQNELTNLALGQANVILQVMNKKAVK 458
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGASLL 529
V + V+ ++E SKA ++ + ++ G LL
Sbjct: 459 D---------KYKVAVIKRPVEFSKETYSKAYNDFSQFIATNNTLDKLTANAEDAGYRLL 509
Query: 530 TTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQE 586
+ ++ + + F+ V + +V VT +
Sbjct: 510 DRADLYSSEHNIGGVKGTKEALKWAFAAKAGEVSGLYECGESDHMMVVAVTRIVPEGYRP 569
Query: 587 KDKFISYLTQMMNKD 601
L + +D
Sbjct: 570 LSMVQDQLRSEILRD 584
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/474 (9%), Positives = 115/474 (24%), Gaps = 17/474 (3%)
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ + + + ++ + V D K + + + +
Sbjct: 247 KEQFRQYVETRNIKYIDVQVTASPEDKADIQKEVEEYTAQLAENPSDYANFVRSTGSTQQ 306
Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
+ ++ + + + + +
Sbjct: 307 YVDLFYTDKALPADVVARLDSVKVGGVYGPYYNASDNTINSFKKLATAAMADSIQYRQIQ 366
Query: 272 V-EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE----YIPDVSLA 326
V + + AD + ++K G F ++A++ G++ + S + E ++
Sbjct: 367 VVAEDAAKTKTLADSIYTAIKGGADFAEIAKKYGQTGEATWISSANYEGAQVDGDNLKYI 426
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
+I +L + + + + + ++ +KA +
Sbjct: 427 AAITTLGQNELTNLALGQANVILQVMNKKAVKDKYKVAVIKRPVEFSKETYSKAYNDFSQ 486
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
L + ++ R +D A + + ++ L F
Sbjct: 487 FIATNNTLDKLTANAEDAGYRL---------LDRADLYSSEHNIGGVKGTKEALKWAFAA 537
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
M V + +P R L V ++ + K AE++ +
Sbjct: 538 KAGEVSGLYECGESDHMMVVAVTRIVPEGYRPLSMVQDQLRSEILRDKKAEKIMADMKAA 597
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ KN + S+ + S PI+
Sbjct: 598 GATSFDQYKNM---ANAVSDSVKHVTFAAPAYVPALRSSEPLVGAYASIAELNKLSTPIK 654
Query: 567 NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
V + + + M+ + I L V +
Sbjct: 655 GNGGVFVLQPYAKDKLNETYNQETEEATLENMHARMASQFINDLYLNADVKDNR 708
>gi|265762561|ref|ZP_06091129.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
gi|263255169|gb|EEZ26515.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
Length = 712
Score = 97.6 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 73/618 (11%), Positives = 176/618 (28%), Gaps = 55/618 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGETLSAQDYQNMVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ +I G + ++ + ++ + V+ +++ + +G+ + I
Sbjct: 61 EYTEVIKFSSGMS-SLNDEQTNQVKDEVWRSYVNNKLIEKEAKKLGITVSKAEIQSIINE 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ LA +K +
Sbjct: 120 GVNPLLQQTPFRNPQTGAFDKDMLKKFLADYSKMDKTKMPSQYVEYYEGMHKLWSFVEKT 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V A + S+ +L
Sbjct: 180 LIQSRLAEKYQALVTKALFSNPVEAQDAFDARVNQSDVLLAA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I + EL+ Y K KE++ + + + E +++
Sbjct: 222 --VPYSSIVDSTITVKESELKDLYNKKKEQFKQYVETRNIKYIDVQVTASAEDRAAIQ-- 277
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
Q + L+ + + KK + V+ I V
Sbjct: 278 ----QEVTDYTNQLATANGDYTTFIRSTGSEYPYVDLYYTKKAFPSDVVARMDSASIGQV 333
Query: 354 SNIK----PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ SF+ + K A + + ED + + + +
Sbjct: 334 YGPYYNAGDNTINSFKVLSKVAAADSVQFRQIQVYTEDAAKTKALADSIYTAIKGGADFT 393
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
++ + A + L F + +++ VAL G+ + +Q+
Sbjct: 394 ALAKKYGQTGESNWISSANYENAQVDGDNLKFISTINNLGVNELSNVALGQGN-IILQVT 452
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL---GA 526
+ +D V + V+ ++E +KA ++ + N G
Sbjct: 453 DKKAVKD------KYKVAVIKRAVEFSKETYNKAYNEFSQFIAANPTVDKVAANAEESGY 506
Query: 527 SLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGP 583
LL N + ++ + + F+ V + +V + +
Sbjct: 507 KLLERNDLYSSEHGIGGIRGTKEALKWAFAAKPGEVSGLYECGESDRMLVVGLVSVIEEG 566
Query: 584 VQEKDKFISYLTQMMNKD 601
+ + L + +D
Sbjct: 567 YRPLVQVQDQLRAEIIRD 584
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/247 (10%), Positives = 65/247 (26%), Gaps = 5/247 (2%)
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ + + E + Y +F+A ++D+++ + L ++ + I
Sbjct: 467 KRAVEFSKETYNKAYNEFSQFIAANPTVDKVAANAEESGYKL--LERNDLYSSEHGIGGI 524
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
++ L F + V + I R L +V ++ +
Sbjct: 525 RGTKEALKWAFAAKPGEVSGLYECGESDRMLVVGLVSVIEEGYRPLVQVQDQLRAEIIRD 584
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
K AE++ + + + + S+ +
Sbjct: 585 KKAEKIMADMKAANATTIAQYTSM---ANAVSDSVKHVTFAAPAYVAALRSSEPLVGAYA 641
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
S PI+ V +V + + M+ L + L +
Sbjct: 642 SVSDINKLSAPIKGNGGVFVLQVYAKDKLNETFDAQSEEATLENMHARLASRFMNDLYLK 701
Query: 614 YSVTVHD 620
V
Sbjct: 702 GDVKDKR 708
>gi|332678352|gb|AEE87481.1| Peptidyl-prolyl cis-trans isomerase ppiD [Francisella cf. novicida
Fx1]
Length = 477
Score = 97.6 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 72/507 (14%), Positives = 159/507 (31%), Gaps = 40/507 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ + I ++ + F+I G++ ++ S V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A + + IL ++ + + + + I
Sbjct: 61 AQS-----------------ATTEEQKRAILSQMIDQYLILVDAQRHDIVVSKLALQSAI 103
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+P+F KD KFS + +A G + + + T + V ++
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDT 162
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY +
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K +IS DE++A Y+ +KE + + + ++ + +L++ ++ Q
Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTI-----QKIIQNRHALEQFNEYTQN 277
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + + G I D + V + F + I +
Sbjct: 278 IDSIKYTKLEKQFGKVKTATIVDN----------NNTTISNVANSQFFINSDKYATITIA 327
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + A K K +E+ + + S
Sbjct: 328 DNKLLVYQVDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKS 387
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
F + A + ++ H +G ++ + P D+
Sbjct: 388 FKQATINSDSQAFGKDFNDYVMFNSN-----NQYHDYKTDNGDIYVYKVTKIEPITDKT- 441
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQL 506
+V + V +K + + Q+
Sbjct: 442 TQVPSQVIDAYKQEELNFYLQVIKQQI 468
>gi|330752745|emb|CBL88208.1| peptidyl-prolyl cis-trans isomerase [uncultured Leeuwenhoekiella
sp.]
Length = 706
Score = 97.6 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 73/623 (11%), Positives = 181/623 (29%), Gaps = 53/623 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR+ R+ + + F++ + + + + SV + + F
Sbjct: 4 LNKIRQ--RSVFLIAIIALALFAFVLADVLKNGGFSTEKSQRILGSVNDEDIEQQEFAGL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG-- 117
+ G + + +A + V LD+ +D+G+ + R+
Sbjct: 62 VDSQTARY----GAGITTTQAV-----NAAWEQEVRRILLDEQYDDLGITVEQDRINDLL 112
Query: 118 --EIARSPLFHGKDNKFSHDVFVSRLA-------REGINEKEYIDHYTKMLSRTDVVGMF 168
+ P F D FS +A +Y + +
Sbjct: 113 KEALQNDPNFQN-DGVFSEQKLREYVATLKSTNPTMYAQWVDYEKQLANNEQQQIYFSLV 171
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAP 227
G+ S A R ++Y+ + S ++ + EK+K ++++
Sbjct: 172 KAGLNTSFKEGQMAYELENNLRDLEYVQIPYASISDDKVSVSKEDISNYIEKHKADFKSE 231
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ + Y++F ++++ + + + A
Sbjct: 232 ASRNLRYVMFSESASA-----TDEDALKGSVASLLNKRVEYTAATKTNDTVSGLAATTNP 286
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ I+ A+ K +P +G +
Sbjct: 287 EEFVNEYSDIRFADSY-----------LFKNELPVA--VADSLFGLNEGAIFGPYKDNGY 333
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y I+ V + K + + + + E + I
Sbjct: 334 YKISKVIG-----VSQIPDSVKASHILLTYEGLANAASQTRSKTEAKKLADSLASVIKGS 388
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
++ P G KG ++ + + + + V Y ++
Sbjct: 389 ASKLAELAPQFSADGSKEKGGDLGYATKGRYVKPFNDFIFNGSTGEVGVVESQYGYHVIR 448
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
I + ++ ++ T K+ + +T EV + + + S++ +F + K+ +
Sbjct: 449 IDDQK--NKQRAIKLATVAKEIEPSQETINEVFNATTKFQMAVSEDKNSFEKVAKSENYT 506
Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ N I +D G + I F+ + Y+V ++T+ +
Sbjct: 507 VRPVNSIKALDETLPGQGSQREIIRWAFNEDTKTGDVQRFNVDGGYLVVQLTSKTEKGLM 566
Query: 586 EKDKFISYLTQMMNKDLLDSVIA 608
D+ +T ++ + +I
Sbjct: 567 PVDQASPRVTPIIRNEKKAELIK 589
Score = 90.3 bits (221), Expect = 8e-16, Method: Composition-based stats.
Identities = 63/575 (10%), Positives = 148/575 (25%), Gaps = 38/575 (6%)
Query: 60 WKQELGMISQK--------IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
++++L Q+ G + + + + L +L I D +
Sbjct: 154 YEKQLANNEQQQIYFSLVKAGLNTSFKEGQMAYELENNLRDLEYVQIPYASISDDKVSVS 213
Query: 112 HGRVWGEIARSPLFHGKD--NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
+ I + + + +F + + +
Sbjct: 214 KEDISNYIEKHKADFKSEASRNLRYVMFSESASATDEDALKGSVASLLNKRVEYTAATKT 273
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
+ F E + + ++++ Y+ Y
Sbjct: 274 NDTVSGLAATTNPEEFVNEYSDIRFADSYLFKNELPVAVADSLFGLNEGAIFGPYKDNGY 333
Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
+IS ++ + + S + + + +
Sbjct: 334 YKISKVIGVSQIPDSVKASHILLTYEGLANAASQTRSKTEAKKLADSLASVIKGSASKLA 393
Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ ++E+ LG +K + G+ V +V
Sbjct: 394 ELAPQFSADGSKEK-----GGDLGYATKGRYVKP--FNDFIFNGSTGEVGVVESQYGYHV 446
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
I + V K+I + +E K S +++++ E
Sbjct: 447 IRIDDQKNKQRAIKLATVAKEI--EPSQETINEVFNATTKFQMAVSEDKNSFEKVAKSEN 504
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ + + + G+ + +++ F +D + DG Y+ VQ+
Sbjct: 505 YTVRPVNSIKALDETLPGQ-----GSQREIIRWAFNEDTKTGDVQRFNV-DGGYLVVQLT 558
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+++ V + K AE + + GK+ I S+
Sbjct: 559 SKTEKGLMPVDQASPRVTPIIRNEKKAELIKKQI---------SGKDLNAIASANNVSVQ 609
Query: 530 TTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQE 586
T N +N + G + F V + YVV KVTN +
Sbjct: 610 TANGVNLKNPTLAGAGTEPKVMGVAFGLDKGAVSNPIAGDKGVYVV-KVTNVTPARKLDN 668
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
F ++ ++ LK + +
Sbjct: 669 YASFAMQKNNADRANVNVVLLQALKDAADIEDRRS 703
>gi|54113793|gb|AAV29530.1| NT02FT0767 [synthetic construct]
Length = 476
Score = 97.6 bits (240), Expect = 5e-18, Method: Composition-based stats.
Identities = 71/515 (13%), Positives = 160/515 (31%), Gaps = 39/515 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ + I ++ + F+I G++ ++ + V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSRAYVAKVGDNEISSQQFQQYA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ A + + IL ++ + + + + I
Sbjct: 61 QS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIF 103
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P+F KD KFS + +A G + + + T + V +
Sbjct: 104 TNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDTK 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY +
Sbjct: 163 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
K +IS DE++A Y+ +KE + + + ++ + +L++ ++ Q
Sbjct: 223 NFVLKNKISEDEIKAYYQAHKELFKDFDNNAKSTI-----QKIIQNRHALEQFNEYTQNI 277
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ + + G I D V + F + I +
Sbjct: 278 DSIKYTKLEKQFGKAKTATIVDN----------NDTTINNVANSQFFINSDKYATITIAD 327
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+ + A K K +E+ + + S F
Sbjct: 328 NKLLVYQVDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSF 387
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+ A + ++ H G ++ + P D+
Sbjct: 388 KQATINSDSQAFGKDFNDYVMFNSN-----NQYHDYKTDSGDIYIYKVTKIEPITDKT-T 441
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
+V + V +K + + Q+ ++ + +
Sbjct: 442 QVPSQVIDAYKQEELNFYLRVIKQQIPIQVNYKNN 476
>gi|308183127|ref|YP_003927254.1| conserved hypothetical secreted protein [Helicobacter pylori
PeCan4]
gi|308065312|gb|ADO07204.1| conserved hypothetical secreted protein [Helicobacter pylori
PeCan4]
Length = 487
Score = 97.6 bits (240), Expect = 6e-18, Method: Composition-based stats.
Identities = 65/477 (13%), Positives = 162/477 (33%), Gaps = 18/477 (3%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+E ++ + V I++ + + WG S + VG+ K+
Sbjct: 1 MIEWMQNHRKYLVVTIWISTIAFIAAGMIGWGQYSFSL---DSDSAAKVGQIKISQEELA 57
Query: 58 NSWKQELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+++ ++ I + ++ +++ L+K LD+L++ A L D+GL A V
Sbjct: 58 QEYRRLKDAYAESIPNFKELTEDQIKAMHLEKSALDSLINQALLRNLALDLGLGATKQEV 117
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
EI ++ +F KD F+ +++ + L + K + + ++L + +F P
Sbjct: 118 AKEIRKTSVFQ-KDGVFNEELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPL 176
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + +++E +K +++ P + +
Sbjct: 177 EQSSLSLWAKL----QDKLDILILNPNDVKISLNEEEMKKYYESHKKDFKKPISFKTRSL 232
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
FD ++ + EL+ Y KNK Y E + + Q + D + Q +
Sbjct: 233 YFDASLEK----PNLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKAL 288
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A ++ + + F + P + + K + G+++ + +
Sbjct: 289 RSYIALKKANVQNYTTQD-FEENNSPYTAEITQKLTALKPLEILKPEPFKDGFIVVQLIS 347
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+F E K + ++ K ++ K + + ++
Sbjct: 348 QTKDELQNFNEAKSALKTRLTQEKTLTALQTLAKEKLKDFKGKSVGYVSPNFGGTINELN 407
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + V + + +H+ + + YM + +
Sbjct: 408 QEESAKFINALFNRQEKKGFIAINNKIVLYQITEQNFNHSFSAEESQYMQRLVNNTK 464
Score = 50.6 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 31/262 (11%), Positives = 80/262 (30%), Gaps = 22/262 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+E + + + + + +E + R I +
Sbjct: 240 KPNLKELEEYYHKNKVSYLDKEGKLQDFKSVQEQVKHDLSMQKANEKALRSYIALKKANV 299
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
++ +D + Q L + + ++ VQ+ +
Sbjct: 300 QNYTTQDFEENNSPYTAEITQKLTALKPLEILK-----PEPFKDGFIVVQLISQTKDELQ 354
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
E + +K KT + + A + + ++ +GK+ + N G ++
Sbjct: 355 NFNEAKSALKTRLTQEKTLTALQTLAKEKLKDF--KGKSVGYVSPNFGGTINE------- 405
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLT 595
N+ I+ +F+ + V++++T E+ +++ L
Sbjct: 406 --LNQEESAKFINALFNRQEKKGFIAI---NNKIVLYQITEQNFNHSFSAEESQYMQRLV 460
Query: 596 QMMNKDLLD-SVIAYLKSQYSV 616
D D ++I LK +Y +
Sbjct: 461 NNTKTDFFDKALIEELKKRYKI 482
>gi|56707753|ref|YP_169649.1| hypothetical protein FTT_0628 [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670224|ref|YP_666781.1| hypothetical protein FTF0628 [Francisella tularensis subsp.
tularensis FSC198]
gi|224456823|ref|ZP_03665296.1| hypothetical protein FtultM_03409 [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254370257|ref|ZP_04986262.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254874566|ref|ZP_05247276.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56604245|emb|CAG45261.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320557|emb|CAL08644.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC198]
gi|151568500|gb|EDN34154.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254840565|gb|EET19001.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158924|gb|ADA78315.1| hypothetical protein NE061598_03585 [Francisella tularensis subsp.
tularensis NE061598]
Length = 476
Score = 97.2 bits (239), Expect = 6e-18, Method: Composition-based stats.
Identities = 71/506 (14%), Positives = 156/506 (30%), Gaps = 39/506 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ + I ++ + F+I G++ ++ + V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSRAYVAKVGDNEISSQQFQQYA 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ A + + IL ++ + + + + I
Sbjct: 61 QS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAIF 103
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+P+F KD KFS + +A G + + + T + V +
Sbjct: 104 TNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDTK 162
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY +
Sbjct: 163 LLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITKD 222
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
K +IS DE++A Y+ +KE + + + ++ + +L++ ++ Q
Sbjct: 223 NFVLKNKISEDEIKAYYQAHKELFKDFDNNAKSTI-----QKIIQNRHALEQFNEYTQNI 277
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ + + G I D V + F + I +
Sbjct: 278 DSIKYTKLEKQFGKAKTATIVDN----------NDTTINNVANSQFFINSDKYATITIAD 327
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+ + A K K +E+ + + S F
Sbjct: 328 NKLLVYQVDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKSF 387
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+ A + ++ H G ++ + P D+
Sbjct: 388 KQATINSDSQAFGKDFNDYVMFNSN-----NQYHDYKTDSGDIYIYKVTKIEPITDKT-T 441
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQL 506
+V + V +K + + Q+
Sbjct: 442 QVPSQVIDAYKQEELNFYLRVIKQQI 467
>gi|189345807|ref|YP_001942336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium limicola
DSM 245]
gi|189339954|gb|ACD89357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium limicola
DSM 245]
Length = 701
Score = 97.2 bits (239), Expect = 7e-18, Method: Composition-based stats.
Identities = 76/603 (12%), Positives = 171/603 (28%), Gaps = 63/603 (10%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ-KIGFVVNSERARSVGLD 86
WG++ + FS S V ++VP++ + +K+ + G ++ E +GL
Sbjct: 30 WGMNFSGFSGKKGSAAGKVNGKEVPYARYEEIYKEFSENFRRSNPGADMSPE--TELGLQ 87
Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF--------SHDVFV 138
++ + LV L++ E G+ + + F
Sbjct: 88 EQAWNVLVDQTLLEEQFEKYGISVQDSEIVASLDGDNPPMVIRQNFVDPATGTIDRASLD 147
Query: 139 SRLA--REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ + + D + L + ++ + S+ LD + + S +I
Sbjct: 148 AARRDLKNKDMWLQIEDIVRRELKVSKLIRALQTMVHVSDRELDAVVKREYTRFSASFIS 207
Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
+ + ++ +K S+ EL +
Sbjct: 208 VPLGFAGPDSKF----------------------------PVKADEIQKYYDSHKELLKQ 239
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
K Y + + + E + K + Q S +++
Sbjct: 240 PASRKADYVFFPLVPSAKDSSVVRTELEALRTEFGTTKNDSDYVKVQSDRPSGVNVQYSR 299
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
++ P + AK G + + Y + VS + +
Sbjct: 300 ADFSPAAGAVVFNSANAKPGSIIGPVADNGYYRLLKVSKVVTGE----PVARASHILLQF 355
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
+ E V + +R+ E S + K S D G + +P
Sbjct: 356 NPASREDVAKVRERMVEIYRKLQSGESFEALAKQYSQDSGSAVKGGDIGWFGRKSVVPEF 415
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ +F P + V G ++ ++ + V+ + +T
Sbjct: 416 AEAVFS----SRPGALTRPVQTKFGLHII-KVTGFD----QNNLVCSEVVRLIRPSTETV 466
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ-VFSG 555
E A ++ +G F + + T + + D I+ F
Sbjct: 467 ESARRLATAFQMQAKDQG--FDKSAISEKLPVAKTGEFGKHTPIAAVGFNDKINAFAFKA 524
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQMMNKDLLDSVIAYL 610
+ IE + V ++T K + + L + + L+ +A L
Sbjct: 525 AEGDL-SEVIETEKGFYVMRLTGKNDTGYRLLDDDLKKRITAELVREKKEAALEKQLASL 583
Query: 611 KSQ 613
++
Sbjct: 584 SAK 586
>gi|218129785|ref|ZP_03458589.1| hypothetical protein BACEGG_01364 [Bacteroides eggerthii DSM 20697]
gi|317475868|ref|ZP_07935125.1| peptidyl-prolyl cis-trans isomerase [Bacteroides eggerthii
1_2_48FAA]
gi|217987895|gb|EEC54220.1| hypothetical protein BACEGG_01364 [Bacteroides eggerthii DSM 20697]
gi|316908028|gb|EFV29725.1| peptidyl-prolyl cis-trans isomerase [Bacteroides eggerthii
1_2_48FAA]
Length = 712
Score = 97.2 bits (239), Expect = 8e-18, Method: Composition-based stats.
Identities = 70/616 (11%), Positives = 164/616 (26%), Gaps = 51/616 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + + F +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETISAQDFQALVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ ++ G S+ ++ + ++ V+ ++ E +GL + I
Sbjct: 61 EYTEVVKFSSGMNALSDE-QTNQIKDEVWRAYVNNKLIENEAEKLGLTVSKAELQAIIDA 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L K + +
Sbjct: 120 GAHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQMPAQYAEYYESMYNFWAFVEKS 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V A D S+ +L
Sbjct: 180 LIQARLQEKYQALITKSLFSNPVEAEDAFNARVDQSDLLLAA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKK 292
+ + I I +L+ Y+K KE++ + + ++ K+
Sbjct: 222 --VPYSSIVDSTIVIKESDLKEAYDKKKEQFRQYVETRNIKYIDVQVTASPEDKADIQKE 279
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+++ E ++ + S + D+ D V G +
Sbjct: 280 VEEYTAQLGETSSDYANFIRSTGSTQQYTDLYYTDKALPADVVARLDSVKVGEVYGPYYN 339
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIV 411
S+ + + Q R + + K L + + + + K
Sbjct: 340 ASDNTINSFKKLATAAMADSIQFRQIQITAGDDAKTKTLADSVYNAIKGGADFAEIAKKY 399
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + +G ++ + + V + + + + K
Sbjct: 400 GQTGEPTWISSANYEGAQID--GDNLKYIAAVTSLGQNELANLALGQANVILQVMSKKAV 457
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN---LGASL 528
V + V+ ++E SKA ++ + N G L
Sbjct: 458 KD---------KYKVAVIKRPVEFSKETYSKAYNDFSQFIAANNTLEKLAANAEDAGYRL 508
Query: 529 LTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQ 585
L + ++ + + F+ V + +V VT +
Sbjct: 509 LDRTDLYSSEHAIGGVKGTKEALRWAFTAKAGEVSGLYECGESDHMMVVAVTGIAPEGYR 568
Query: 586 EKDKFISYLTQMMNKD 601
L + +D
Sbjct: 569 PLSMVKEQLRSEILRD 584
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/247 (11%), Positives = 66/247 (26%), Gaps = 5/247 (2%)
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ + + E + Y +F+A ++++++ + L +D + +
Sbjct: 467 KRPVEFSKETYSKAYNDFSQFIAANNTLEKLAANAEDAGYRL--LDRTDLYSSEHAIGGV 524
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
++ L F M V + P R L V ++ +
Sbjct: 525 KGTKEALRWAFTAKAGEVSGLYECGESDHMMVVAVTGIAPEGYRPLSMVKEQLRSEILRD 584
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
K AE++ + + KN + S+ +
Sbjct: 585 KKAEKIMADMKAAGATSFDQYKNM---ANAVSDSVKHVTFAAPAYVPVLRSSEPLVGAYA 641
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
S PI+ V + + K + M+ + I L +
Sbjct: 642 STAELNKLSAPIKGNGGVFVLQPYAKEKLSETYDQKTEETTLENMHARMAGQFINDLYLK 701
Query: 614 YSVTVHD 620
V +
Sbjct: 702 AEVKDNR 708
>gi|145589120|ref|YP_001155717.1| hypothetical protein Pnuc_0937 [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047526|gb|ABP34153.1| hypothetical protein Pnuc_0937 [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 487
Score = 96.9 bits (238), Expect = 9e-18, Method: Composition-based stats.
Identities = 39/237 (16%), Positives = 91/237 (38%), Gaps = 10/237 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + +RK + + + ++ + F+++G+S + + +V V + + ++
Sbjct: 1 MFDTVRKHQK-LLQIVLMLFIVPSFVMFGISSYSGFLDKETDLVKVNGKPITAQEVDSAA 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
K++ + I + A+S+ + IL+ L+ L + ++ L+ + +
Sbjct: 60 KRQAERVGGNI------QIAQSLQFRQAILNELLQQRILGFAVINLRLQVGKEALIKSLQ 113
Query: 121 RSPLFHG---KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P +D F F LA G+NE+++ L + V P+
Sbjct: 114 NIPQIRALYRQDGSFDDVRFKQLLASNGLNEEQFYASQAFDLKISQFVNSVARTELPTPK 173
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
L + Y R V + + + +P+ L ++ + +PEY + Y
Sbjct: 174 LSEIVSTLYETERQVQSLSFDAKEYINKVNPTQEELQAFYNANTKLFESPEYIDVEY 230
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 42/355 (11%), Positives = 96/355 (27%), Gaps = 7/355 (1%)
Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
S + +QL+ N ++ + S K Q ++ S + +
Sbjct: 126 GSFDDVRFKQLLASNGLNEEQFYASQAFDLKISQFVNSVARTELPTPKLSEIVSTLYETE 185
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
S K V + +N K + + +V+ + A
Sbjct: 186 RQVQSLSFDAKEYINKVNPTQEELQAFYNANTKLFESPEYIDVEYIVLKADPKEDAKGFS 245
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ + S+ + + K+ + +G K+ K
Sbjct: 246 AKADQFANMTYDQADSLKPAADKLKLSIQTQKGITRSGPSGASKDNPLANPKVVQSLFGD 305
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+ G ++ ++ PA+ +EV T+VK+ + + A
Sbjct: 306 DAVKNKRNIEAIQTSPGVFVSARVVTFHPAQILPYKEVATEVKRQVSQRAAEKLAIAAAA 365
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCF 563
+ K+ K + S + + ++ + + + S V
Sbjct: 366 ERYASLQKDPKLATGFAAPIWVSRNKPANLVGLALDDVMSVNTNQLPAIVSVANPGVGT- 424
Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
Y V +V + + + + +AY + SV V
Sbjct: 425 -----TLYRVDQVRQPAGVDAKAHKAQAQQIQALSAQSEFAGFMAYWRDAASVKV 474
>gi|118497644|ref|YP_898694.1| hypothetical protein FTN_1053 [Francisella tularensis subsp.
novicida U112]
gi|195536345|ref|ZP_03079352.1| numod1 domain family protein [Francisella tularensis subsp.
novicida FTE]
gi|118423550|gb|ABK89940.1| outer membrane protein of unknown function [Francisella novicida
U112]
gi|194372822|gb|EDX27533.1| numod1 domain family protein [Francisella tularensis subsp.
novicida FTE]
Length = 477
Score = 96.9 bits (238), Expect = 9e-18, Method: Composition-based stats.
Identities = 73/507 (14%), Positives = 159/507 (31%), Gaps = 40/507 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ + I ++ + F+I G++ ++ S V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A + + IL ++ + + + + I
Sbjct: 61 AQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+P+F KD KFS + +A G + K + T + V ++
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAKNIQATIIPKTIVDTFIVTDYDT 162
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY +
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPADFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K +IS DE++A Y+ +KE + + + ++ + +L++ ++ Q
Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTI-----QKIIQNRHALEQFNEYTQN 277
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + + G I D + V + F + I +
Sbjct: 278 IDSIKYTKLEKQFGKAKTATIVDN----------NDTTISNVANSQFFINSDKYATITIA 327
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + A K K +E+ + + S
Sbjct: 328 DNKLLVYQVDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKS 387
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
F + A + ++ H +G ++ + P D+
Sbjct: 388 FKQATINSDSQAFGKDFNDYVIFNSN-----NQYHDYKTDNGDIYVYKVTKIEPITDKT- 441
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQL 506
+V + V +K + + Q+
Sbjct: 442 TQVPSQVIDAYKQEELNFYLQVIKQQI 468
>gi|261365094|ref|ZP_05977977.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria mucosa ATCC
25996]
gi|288566520|gb|EFC88080.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria mucosa ATCC
25996]
Length = 511
Score = 96.9 bits (238), Expect = 9e-18, Method: Composition-based stats.
Identities = 51/254 (20%), Positives = 108/254 (42%), Gaps = 16/254 (6%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
A+I L ++ + F+ +G+ SGS +V VG +K+ + N+ + E +
Sbjct: 12 AQILLGLIALTFIGFGVET--ARNSGSDYIVKVGSEKISDHTLNNAVQAEQAAGGGQS-- 67
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ I LV A L + + +G++ +V I P FH + KFS
Sbjct: 68 ------------REAIFSGLVQRAYLKEGAKMMGIDVSMDQVKQAIVDDPAFHDANGKFS 115
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+F L++ ++E ++ID + + +++ + G S+ +Q + NR++
Sbjct: 116 QALFTQYLSQRHMSEDQFIDDLREQFALQNLINLVQNGAIISDSQAEQLIKLTQSNRTIR 175
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
A +A L +++E +K +Y P+ ++ Y+ + +K IS DE+
Sbjct: 176 SFTFRPETFAAQVKTDDATLQRYYESHKKDYLIPQAVKLEYVALNAAHLAEKQSISADEV 235
Query: 254 QAEYEKNKEKYFSP 267
+ +++
Sbjct: 236 KKAFDEEVAALPQN 249
>gi|288817631|ref|YP_003431978.1| hypothetical protein HTH_0310 [Hydrogenobacter thermophilus TK-6]
gi|288787030|dbj|BAI68777.1| hypothetical protein HTH_0310 [Hydrogenobacter thermophilus TK-6]
gi|308751229|gb|ADO44712.1| Formiminotransferase domain protein [Hydrogenobacter thermophilus
TK-6]
Length = 444
Score = 96.5 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 16/232 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL---FSVSGSSTVVSVGRQKVPFSSFI 57
M +I+K + + V F +W + G V V + +
Sbjct: 1 MYTLIQKHKT--LLVFIVTVASGAFFLWLFFTGSVRDITSVGKKCVAEVNGSCITLRDYR 58
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + S+ + + K++++NL++ L Q +G A V
Sbjct: 59 RELLRFSNIQSRDL----------EEVIKKQVIENLITQELLYQKARSLGFYASDEEVVS 108
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I P F + FS + LAR G+ EY D+ +ML+ ++ + + S
Sbjct: 109 VIKSDPTFQ-EGGVFSASKYKEMLARLGLEPGEYEDYIRRMLTVQKLLALVSNSVYLSEA 167
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
+ S ++ V P+ + ++EK K+ +R PE
Sbjct: 168 EKNINLAVQSTLLSGKLYIITPSDVEVSYTPTQEEMMSFYEKNKELFRRPEK 219
Score = 81.8 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/266 (13%), Positives = 87/266 (32%), Gaps = 14/266 (5%)
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
+ D+ T+ + + + + ++K ++ GK
Sbjct: 185 YIITPSDVEVSYTPTQEEMMSFYEKNKELFRRPEKKLVRVWAEKDKAKVEEIYRAIKEGK 244
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL---PDGSYMWVQIKESIPARDRKLE 480
V+G +P L + + L Y+ V + PA R E
Sbjct: 245 QVQGYTEYLLPDDANRLPKGVSSEVSKLDQKDGILVTKEGDEYLIVYLYRVEPAGIRSFE 304
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN--QINRMD 538
EV ++ + A + KA ++ ++ K++ LT ++++
Sbjct: 305 EVKEQIRSALIDKRKASLLRDKAQEIYKRLTEG--------KDVSVKYLTFEDTPVDQIM 356
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
+ K +S + S ++ + + G V K +E K + M
Sbjct: 357 SIAKVKEGQVVSFILS-KQKVFGPYELSQGYGVFVITDRKKKPADEEEIKKLTQDILNMK 415
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++ +I +L + +++ +I+
Sbjct: 416 SDATVNYLIEHLIRSAKIKINEEVIK 441
>gi|254374458|ref|ZP_04989940.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|151572178|gb|EDN37832.1| conserved hypothetical protein [Francisella novicida GA99-3548]
Length = 477
Score = 96.5 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 72/507 (14%), Positives = 159/507 (31%), Gaps = 40/507 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ + I ++ + F+I G++ ++ S V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A + + IL ++ + + + + I
Sbjct: 61 AQS-----------------ATTEEQKRAILSQMIDQYLILVDAQRHDIVVSKLALQSAI 103
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+P+F KD KFS + +A G + + + T + V ++
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDT 162
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY +
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K +IS DE++A Y+ +KE + + + ++ + +L++ ++ Q
Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTI-----QKIIQNRHALEQFNEYTQN 277
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + + G I D + V + F + I +
Sbjct: 278 IDSIKYTKLEKQFGKAKTATIVDN----------NDTTISNVANSQFFINSDKYATITIA 327
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + A K K +E+ + + S
Sbjct: 328 DNKLLVYQVDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKS 387
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
F + A + ++ H +G ++ + P D+
Sbjct: 388 FKQATINSDSQAFGKDFNDYVMFNSN-----NQYHDYKTDNGDIYVYKVTKIEPITDKT- 441
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQL 506
+V + V +K + + Q+
Sbjct: 442 TQVPSQVIDAYKQEELNFYLQVIKQQI 468
>gi|187931475|ref|YP_001891459.1| hypothetical protein FTM_0703 [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712384|gb|ACD30681.1| conserved hypothetical protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 477
Score = 96.1 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 72/507 (14%), Positives = 158/507 (31%), Gaps = 40/507 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ + I ++ + F+I G++ ++ S V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A + + IL ++ + + + + I
Sbjct: 61 AQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+P+F KD KFS + +A G + + + T + V +
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVIDYDT 162
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY +
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPTDFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K +IS DE++A Y+ +KE + + + ++ + +L++ ++ Q
Sbjct: 223 DNFVLKNKISEDEIKAYYQAHKELFKDFDNNAKSTI-----QKIIQNRHALEQFNEYTQN 277
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + + G I D + V + F + I +
Sbjct: 278 IDSIKYTKLEKQFGKAKTATIVDN----------NDTTISNVANSQFFINSDKYATITIA 327
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + A K K +E+ + + S
Sbjct: 328 DNKLLVYQVDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKS 387
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
F + A + ++ H +G ++ + P D+
Sbjct: 388 FKQATINSDSQAFGKDFNDYVMFNSN-----NQYHDYKTDNGDIYIYKVTKIEPITDKT- 441
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQL 506
+V + V +K + + Q+
Sbjct: 442 TQVPSQVIDAYKQEELNFYLQVIKQQI 468
>gi|254373010|ref|ZP_04988499.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570737|gb|EDN36391.1| conserved hypothetical protein [Francisella novicida GA99-3549]
Length = 477
Score = 96.1 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 72/507 (14%), Positives = 160/507 (31%), Gaps = 40/507 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ + I ++ + F+I G++ ++ S V VG ++ F+
Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFLQY 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A + + IL ++ + + + + I
Sbjct: 61 AQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+P+F KD KFS + +A G + + + T + V ++
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDT 162
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY +
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPADFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K +IS DE++A Y+ +KE + + + ++ + +L++ ++ Q
Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTI-----QKIIQNRHALEQFNEYTQN 277
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + + G I D + V + F + I +
Sbjct: 278 IDSIKYTKLEKQFGKAKTATIVDN----------NDTTISNVANSQFFINSDKYATITIA 327
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + A K K +E+ + + S
Sbjct: 328 DNKLLVYQVDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKS 387
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
F + A + ++ H +G ++ + P D+
Sbjct: 388 FKQAIINSDSQAFGKDFNDYVMFNSN-----NQYHDYKTDNGDIYVYKVTKIEPITDKT- 441
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQL 506
+V + V +K + + Q+
Sbjct: 442 TQVPSQVIDAYKQEELNFYLQVIKQQI 468
>gi|332826777|gb|EGJ99594.1| hypothetical protein HMPREF9455_04090 [Dysgonomonas gadei ATCC
BAA-286]
Length = 702
Score = 96.1 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 75/698 (10%), Positives = 187/698 (26%), Gaps = 82/698 (11%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S V I + + + F+ F V + + + +
Sbjct: 4 LQKIRSKSGLLVGIIAVGL--LAFVFPWGEVTTFVNKMRDKAFVVDGKVITTKEYSDKIA 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE--- 118
Q + + + + + + + +V LD+ +GL +
Sbjct: 62 QW-ENFQKIMSNQSSLDEFTNSQIREMAYQQMVKEIMLDEEAGRLGLAVTPEELNDMVYG 120
Query: 119 ------IARSPLFHG-KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
+ + P F + +F + L+ + + + + + F+
Sbjct: 121 PVVAPILYQIPFFANPQTGQFDKAYLMQFLSDINQDPTTMQEPHRSEIMARREIWAFIQN 180
Query: 172 MRPSNLLLDQAK-------------------RFYFENRSVDYIVLNNRHVPAIADPSNAV 212
M L ++ + + + S+
Sbjct: 181 MMKYQRLEEKYASLVAGSVLVSDTEAKAAYGDSKNVADIAYVVQRYSTLADSAVQVSDKE 240
Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP----- 267
+ ++ K+NY+ R + + ++ + + +P
Sbjct: 241 IKALYDLRKNNYKLDTELRKISYFIKDVVPSDEDYAAIEQEMNAAYEKLKMTDNPAIVLS 300
Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY-------- 319
E + Q +F ++ + + + + + +
Sbjct: 301 EYSSTYQDIFMAVTSLPADAKTFVESASVGDIFGPVREDQTYLMYKLIDRTNAADSIKLQ 360
Query: 320 -IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
IP D S V+ G + S + + I
Sbjct: 361 IIPLPQGLDEKTSAHIVDSIQSVLKGGKDFGAVADELFPNSNGGDLGWTNEAMLASAGIA 420
Query: 379 K-----ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV----------DFAGK 423
K A +V + ++ L + K+ I LP++ + +
Sbjct: 421 KECFAAAKGEVLKLKVGGQDQLIRIADKTNPVPKVKLAVIQLPVIISDKTQNAIDNELNQ 480
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG-------SYMWVQIKESIPARD 476
V K + + +AL + + + S+ D
Sbjct: 481 FVSENGNLENFDKAAQAKGYSLIQNSIISPSEIALGQATGTRQVIHWAFNEKVGSVKKFD 540
Query: 477 RKLEEVLTDVKKDWKTVK--TAEEVSSKANQLVLEYS----------KEGKNFRDIGKNL 524
+ V+ VK + +E ++ +L+ + K + + +
Sbjct: 541 MSDKRVVAIVKNEITGDYMPVSEVATALKTELINDKKAEKIIADLKAKNLTSLDAYAQAV 600
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFS-GPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ T N + N GY+ + V+S P++ V VTN
Sbjct: 601 SGKVDTVNFVTFQTNNLSGIGYEPLMNVYSKLGQVNKLEAPMKGKSGVYVLNVTNKTEDT 660
Query: 584 VQ-EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ ++ L Q ++ ++ L+++ +V +
Sbjct: 661 KEFNAEQTKQSLKQANYYQMMSQAVSILRNKMNVEDNR 698
>gi|254495144|ref|ZP_05108068.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
gi|85819494|gb|EAQ40651.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
Length = 695
Score = 96.1 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 82/625 (13%), Positives = 189/625 (30%), Gaps = 67/625 (10%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
L IR+ R+ I + + F++ F+ S + V V + + F
Sbjct: 4 LSKIRE--RSMFLIIIIGLALFAFVLDPSTLGDFFNSSKVNEVGEVDGEAISRQEF---- 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-- 118
EL Q+ G + +A + DN+V + + G+ VW E
Sbjct: 58 ANELESYKQQTGGRASEMQAAKT-----VWDNIVRKKIYKNQLNEAGITIGEADVWNEVV 112
Query: 119 ----IARSPLFHGKDNKFSHDVFVSRL-------AREGINEKEYIDHYTKMLSRTDVVGM 167
+ +P + + F + F L + Y++ +
Sbjct: 113 NAPFVQNNPQYQNEVGLFDENKFKQFLADTKENNEQLWAQWSSYMNQVRDNAETNTFNNL 172
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYRA 226
G+ S + + ++ + + ++ + + + + +KD ++
Sbjct: 173 VTAGLGASLKEGEMQYLIDNTKLNGQFVYVPYTSIADSLVKLKKSEVEAYIQSHKDQFQV 232
Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
+ ISY+ FD+ + + ++
Sbjct: 233 EASRDISYVKFDIVATPEDEQAIMLDV-------------------------------AG 261
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ K L + S + ++ G K + ++ A +GD
Sbjct: 262 LKEDFKTTDNDVLFLSENDSDTGLNTGYVFKSNV--NAIIADDLFAANEGDIVGPYKDLN 319
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
++ ++ + + + + + + V + ++ ++ + +
Sbjct: 320 AIKLSKITEVTQLPDSV--KASHILIPFVGAQRVAADVTRTEEEAKQLADSLLAVVKRRK 377
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ D A G+ + FR F + V P G ++
Sbjct: 378 SKFADLAKEFSSDQASAVKGGEYDWYNYNRMTPAFRDFTFEGKKGDMDVVKTPFGFHVIK 437
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+ + K+ D+ + +T V +A + L SKE NF D K L
Sbjct: 438 IDDQKNKQKVIKMATFSKDIVP---SEETENAVFRQAEEFALAVSKE-NNFFDAAKELNY 493
Query: 527 SLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
+ +D G +S F+ ++ + S+VV VT + +
Sbjct: 494 KPKPAVGLKVLDESVPGIGNQRQIVSWAFNNETDVNAFKRFDLEGSHVVAFVTGIEEEGL 553
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAY 609
+K S + ++ + ++IA
Sbjct: 554 MSVNKATSKVRPILMNEKKAALIAE 578
Score = 75.7 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/339 (9%), Positives = 93/339 (27%), Gaps = 23/339 (6%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ K + + +Q ++ ++ + + D F K V+ F
Sbjct: 375 RRKSKFADLAKEFSSDQASAVKGGEYDWYNYNRMT-PAFRDFTFEGKKGDM--DVVKTPF 431
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G+ + + + ++ + + + V + ++ + + ++
Sbjct: 432 GFHVIKIDD--QKNKQKVIKMATFSKDIVPSEETENAVFRQAEEFALAVSKENNFFDAAK 489
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
G V + V I + Q++ F + ++ L +
Sbjct: 490 ELNYKPKP-----AVGLKVLDESVPGIGNQRQIVSWAFNNETDVNAFKRFDLEGSHVVAF 544
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+ + + + V+ K A ++ K G + +I K
Sbjct: 545 -VTGIEEEGLMSVNKATSKVRPILMNEKKAALIAEK---------FNGSDLPEIAKANNT 594
Query: 527 SLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
SL T + I G + +++ + + N + + + +
Sbjct: 595 SLRTASNITLKSPTLSGVGVEPKIVGAMYNAEIGKLYNKVEGNRGVFAFKLTSKEEPTAL 654
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
D + + + +K V + +
Sbjct: 655 PNYDANRKRIAEARKRQTFKMY-EAIKKASDVEDNRAFM 692
>gi|332291258|ref|YP_004429867.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
diaphorus 4H-3-7-5]
gi|332169344|gb|AEE18599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
diaphorus 4H-3-7-5]
Length = 713
Score = 95.7 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 67/598 (11%), Positives = 177/598 (29%), Gaps = 49/598 (8%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
L F+ + V S+ + +F + +++ + A + +
Sbjct: 31 LDSGGFNADKQNRVASINGVNIDREAFASKVEEQTRRLGAN---------ASTTRAVNTV 81
Query: 90 LDNLVSGATLDQFIEDIGLEA----DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA--- 142
+ ++ L++ E++G+E + + F D FS +A
Sbjct: 82 WEQEINRVVLEEQYEELGIEVGRDRTQELLKQALQNDTRFQDGDGFFSEGKMQEFIATLK 141
Query: 143 -----REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ N + ++ ++ + G+ + + A R N + ++ +
Sbjct: 142 ESQNPNDYQNWLNFEENLRNQEKQSIYYNLIKAGVGSTLKDGEIAYRLDNNNVDIQFVQV 201
Query: 198 NNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
VP P S + ++ ++K+ Y+ E + I ++ F + EL
Sbjct: 202 PYTSVPDEEAPVSKEEIQKYVNEHKEEYKTDETRSIRFVKFSEEASLEDENALKAELSKL 261
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
+ + + + + D + ++ + + +L +
Sbjct: 262 RNEYTSRNGATGVTETLAGFDKTDRVEDFLLDNSDIPYVNRWFFKKNLPATNADTLFALG 321
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
K + ++ V +++
Sbjct: 322 KGG------------------VYGPYKDNNYMNLSRVMDVRKMPDSVKSRHILIDFKGAV 363
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
V R +E + + +F+ + + Y+
Sbjct: 364 TNTQRGPVPSSATRTKEEAKNLADSLLSVIKRNSGKFEELAKEFSSDKSNSENGGDLDYQ 423
Query: 437 EQLLFRVFGKDDPLSK---DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
LF +D + +A + Y ++I + + + +V T VK+ +
Sbjct: 424 NPNLFAEGYRDFIVDNKTGSVGIAETNFGYHVIEITDQK--NLQDVIKVATVVKEIVPSD 481
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQ 551
KT + + + E + + +F+++ G ++ +I MD G +
Sbjct: 482 KTISSIYNTTQKF--ELAAQDGDFQEVATENGYTVRPVQRIRAMDENLPGEGAQRSIVQW 539
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
F V + Y+V +VT + + + +T ++ ++I
Sbjct: 540 AFEEEVSVGDIKRFPVNNGYIVAQVTRRTPKGTERVEDVSTQVTPILRNMKKAAIIKD 597
Score = 89.5 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 59/517 (11%), Positives = 140/517 (27%), Gaps = 20/517 (3%)
Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
+ + + D S +E +K+ +
Sbjct: 213 VSKEEIQKYVNEHKEEYKTDETRSIRFVKFSEEASLEDENALKAELSKLRNEYTSRNGAT 272
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
G + F + D +N +NA K +
Sbjct: 273 GVTETLAGFDKTDRVEDFLLDNSDIPYVNRWFFKKNLPATNADTLFALGKGGVYGPYKDN 332
Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
++ K S L P + + + AD
Sbjct: 333 NYMNLSRVMDVRKMPDSVKSRHILIDFKGAVTNTQRGPVPSSATRTKEEAKNLADSLLSV 392
Query: 290 LKKGK-KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
+K+ KF +LA+E S+ G + +L + + T + +
Sbjct: 393 IKRNSGKFEELAKEFSSDKSNSENGGDLDYQ--NPNLFAEGYRDFIVDNKTGSVGIAETN 450
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
HV I + + ++ + + + + E A E++
Sbjct: 451 FGYHVIEITDQKNLQDVIKVATVVKEIVPSDKTISSIYNTTQKFELAAQDGDFQEVATEN 510
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ + +++ G+ + ++ F ++ + + +G Y+ Q+
Sbjct: 511 GYTVRPVQRIRAMDENLPGE-----GAQRSIVQWAFEEEVSVGDIKRFPVNNG-YIVAQV 564
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
P ++E+V T V + +K A + K G ++ ++ ++
Sbjct: 565 TRRTPKGTERVEDVSTQVTPILRNMKKAAIIKDKL---------SGATLAEMAQSQSQTV 615
Query: 529 LTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
T + I+ G + + F + + YVV ++ ++
Sbjct: 616 KTASAISMNAPTIAGAGNEPKVVGAAFGLKEGEISDPIEGSRGVYVVQVTKITEAPALEN 675
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
F + Q + V+ LK + +
Sbjct: 676 YASFATQEAQKARVAVSSKVLNALKEAAEIEDNRATF 712
>gi|218961252|ref|YP_001741027.1| hypothetical protein; putative signal peptide [Candidatus
Cloacamonas acidaminovorans]
gi|167729909|emb|CAO80821.1| hypothetical protein; putative signal peptide [Candidatus
Cloacamonas acidaminovorans]
Length = 565
Score = 95.7 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 73/616 (11%), Positives = 180/616 (29%), Gaps = 67/616 (10%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
I + +L + FL+ + + SS SV ++ F NS++ + + G
Sbjct: 7 FIVITLLGLFFLV------SCATNSSSVAGSVNGTEISLEDFFNSYRGHYAIFGYQTGRT 60
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE--------IARSPLFH 126
E L + ++ L + + + A V I +SP F
Sbjct: 61 PTKEE--KEKLHNETWRDITKAIILQDYYKKYNISASVAEVLDTLSNSIPEHIIKSPRFQ 118
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ KF +++ L + + + + + V + +
Sbjct: 119 V-NGKFDKKLYLQSLMTDQPENLAALRKHYQENVIPILKLQKVLIEEEMLSSKIRKQVEQ 177
Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
+ D + S+A ++ W++ + +R ++ R+ Y V ++
Sbjct: 178 IIASNADLELYIFAPSQLEISLSDAEISAWYQTNLEQFRLWQFYRLGYCSIPVIPDSTEL 237
Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
+ + + + +I + D +Q + E
Sbjct: 238 SDAKNTAEFIRNELVRGIDIKDIIANLENKNSLVSFIDNGYQKTE----------ELPWE 287
Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
+ + LG + G + + G+++ + T+
Sbjct: 288 IQNALLG-------------------LENGLCSEPLPYEKGWIMYQKIQSTKTLTLY--- 325
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
I Q AS E + LAL + + + I P + V
Sbjct: 326 --NTIFVQALPKTASLLAPETQAQQIMKLALNIGLQQAADEFGISYTLTPAMSPDSLIVP 383
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
++ K + +PL +++ ++ E LEEV +
Sbjct: 384 ANDIKGKLMKYLEIANSGDIIEPLYSAEL-----SAWLIFEVVEKQSKEYLPLEEVKPQI 438
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
+ + ++ + ++ +N + +T + + + +
Sbjct: 439 VQILSKERRKDQNKQIVERWLIN-----QNIPANYQWEKLEQVTIDSLWQGKPLTTIYYQ 493
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDKFISYLTQMMNKDLLDS 605
+ + + G +V KVT + + ++ + TQ + +D +S
Sbjct: 494 AVKAYLEKANPPQIT-----EGEVIIVPKVTAFRPQKTKISPERIKTIYTQNLPEDWFNS 548
Query: 606 VIAYLKSQYSVTVHDN 621
+ + V ++
Sbjct: 549 WMEEQVKKAKVVINTK 564
>gi|86131509|ref|ZP_01050107.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
gi|85817954|gb|EAQ39122.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
Length = 713
Score = 95.7 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 68/595 (11%), Positives = 167/595 (28%), Gaps = 43/595 (7%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
L F+ + V S+ + F + + + +
Sbjct: 31 LDSGGFNADKQNRVASINGVNLDREDFATKVEAQTRRAGANS---------STTRAVNAV 81
Query: 90 LDNLVSGATLDQFIEDIGLEADHGR----VWGEIARSPLFHGKDNKFSHDVFVSRLARE- 144
+ V+ L++ E++G++ R + + F D FS +A
Sbjct: 82 WEQEVNRVLLEEQYEELGIQVGKDRTQELLKQALQNDVRFQDADGFFSEAKMQEFIATLK 141
Query: 145 -------GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ + + + + G+ + + A + + Y+ +
Sbjct: 142 DSQNPGDYQSWLVFEESLRNQEKQEIYYNLVRAGVGATLKDGEVAYKLDNNTVDIQYVQM 201
Query: 198 NNRHVPAIADP-SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
VP P S + ++ +KD ++ E + I ++ F + EL
Sbjct: 202 LYTSVPDEEAPVSKDEIQEYVNDHKDEFQTEETRSIRFVKFVEEASLEDENALKAELSKL 261
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
+ + + + ++ D + ++ S + +L +
Sbjct: 262 RNEYTARNGATGVTETFAGFDKTEEIEDFLIDNSDVPFVDRWFFKKDLPSTNADTLFALG 321
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
K + + + + + V+ S+I F + +
Sbjct: 322 KGGVYGP------YKDGRYMNLSRVVDVRKMPDSVKTSHILIDFQGAVTNTARGPIPSSA 375
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
+ K L +++++ D + D G P
Sbjct: 376 TRSKEDAKKLADSLLSVLKRNKNKFEDLAKEFS--------TDKSNSDNGGDLDYQNPNL 427
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+R F D+ G ++ + + + + +V T VK+ + KT
Sbjct: 428 FAAGYRDFIVDNNEGTIGIAETNFGYHVINIVDQKN---VQDVIKVATVVKEILPSDKTI 484
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFS 554
+ + + E + +F+ + G ++ +I MD G I F
Sbjct: 485 SNIYNTTQKF--ELAAAEGDFQTVATENGYAVRPVQRIRAMDETLPGEGAQRSVIQWAFE 542
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ Y+V +VT + + +T ++ +I
Sbjct: 543 EDTNVGDIKRFATNDGYIVAQVTRRTPAGTERVEDVSLQVTPIIRNMKKAEIIKN 597
Score = 94.9 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 65/519 (12%), Positives = 151/519 (29%), Gaps = 24/519 (4%)
Query: 110 ADHGRVWGEIARSP-LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
+ + F ++ + FV + + ++ + L
Sbjct: 213 VSKDEIQEYVNDHKDEFQTEETR--SIRFVKFVEEASLEDENALKAELSKLRNEYTARNG 270
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
G+ + D+ + + +R PS T + Y +
Sbjct: 271 ATGVTETFAGFDKTEEIEDFLIDNSDVPFVDRWFFKKDLPSTNADTLFALGKGGVYGPYK 330
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
R + V ++ + + +++ I + + K+ ++
Sbjct: 331 DGRYMNLSRVVDVRKMPDSVKTSHILIDFQGAVTNTARGPIPSSATRSKEDAKKLADSLL 390
Query: 289 S--LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
S + KF LA+E S+ G + +L + + + I +
Sbjct: 391 SVLKRNKNKFEDLAKEFSTDKSNSDNGGDLDYQ--NPNLFAAGYRDFIVDNNEGTIGIAE 448
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
HV NI V + ++ + + + + E A ++
Sbjct: 449 TNFGYHVINIVDQKNVQDVIKVATVVKEILPSDKTISNIYNTTQKFELAAAEGDFQTVAT 508
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + + + G+ + ++ F +D + A DG Y+
Sbjct: 509 ENGYAVRPVQRIRAMDETLPGE-----GAQRSVIQWAFEEDTNVGDIKRFATNDG-YIVA 562
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
Q+ PA ++E+V V + +K AE + +K G +I ++ G
Sbjct: 563 QVTRRTPAGTERVEDVSLQVTPIIRNMKKAEIIKNKI---------SGSTLSEIAQSQGT 613
Query: 527 SLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
++ T ++ G + + F V + YV+ V S+ +
Sbjct: 614 TVKTAGAVSMNAPTIAGAGNEPKVVGAAFGLKEGEVSSPIEGSRGVYVIEVVKVSEAPGL 673
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ F Q + V+ LK + +
Sbjct: 674 ENYAAFAGQQAQKSRAAVSTKVLNALKEAADIEDNRATF 712
>gi|311744939|ref|ZP_07718724.1| putative peptidyl-prolyl cis-trans isomerase [Algoriphagus sp. PR1]
gi|126577446|gb|EAZ81666.1| putative peptidyl-prolyl cis-trans isomerase [Algoriphagus sp. PR1]
Length = 702
Score = 95.3 bits (234), Expect = 3e-17, Method: Composition-based stats.
Identities = 75/661 (11%), Positives = 178/661 (26%), Gaps = 79/661 (11%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
S + V +G +++ + + ++ Q+ G + ++ ++
Sbjct: 40 NSNQNIVGEIGGEEISYEEYSAKVEEFKMSFQQRTGR--TPSEPEMFSVREQAWQAMIVE 97
Query: 97 ATLDQFIEDIGLEADHGRVWGEIA--------RSPLFHGKDNKFSHDV---FVSRLAREG 145
+ E +GLE + + R L + + +F F+ L
Sbjct: 98 NVFQEEYEKLGLEISDAELVDMVQGKNIVAEIRQQLINPQTGQFDKTQLVSFLQSLETAD 157
Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE-----NRSVDYIVLNNR 200
++ + +M + + + + + S +F +E V
Sbjct: 158 PTQQAFWAQQEQMFAESRLRIKYDNMLATSEYTTTDEAKFEYEAANTVADVSHLFVPYYV 217
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
+ + S + + + ++K + I Y+ F + + E+ + ++
Sbjct: 218 IADSAVEVSESEMKSYLSEHKSKFETGSSANIEYVSFSIQPSSQDSAEVISEMNSLTQEL 277
Query: 261 KE--------------KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
+ ++ + +L DE G +
Sbjct: 278 RNSDNDSTFVVRNSETQFPFFTYQPGAELPVGLTSNVDEVEAGQTYGPFVTTNSSYVSYK 337
Query: 307 LSDISLGS---------FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+SD G+ FS E + D + A+ + + +
Sbjct: 338 ISDQYEGAARMRASHILFSTEGMDDAAKANVRAQAEEVLADLKGGGNFALAASQYGQDGT 397
Query: 358 PSFTVSFQEVKKDIANQMRIT-----KASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
KK + K+ + + F + + ++ K+
Sbjct: 398 SQNGGDLGYFKKADFVEPFAEAVFAAKSEGLINNLVETEYGFHIVEVTGMPLTTYTKLAV 457
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
++ LV + +A F ++ + + + I
Sbjct: 458 LERELVASDATRNEAFRMADSFAASSGNRNEFKENASTDGYRVLEASNVNATARNINNIQ 517
Query: 473 PARD----RKLEEVLTDVKK-------------------------DWKTVKTAEEVSSKA 503
AR E +V D +T + + K
Sbjct: 518 NARQVIRWAFTEASEDEVSPVFELDNNYIVASLISKKEEGDVELADVRTQVETQVRNEKK 577
Query: 504 NQLVLEYSKEGKNFRDIGKNL-GASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMV 560
++ E K ++ ASL TT + + G I +F
Sbjct: 578 AAMIAEQLKGKATLEEMQSVYPDASLNTTPDLKLSASVIPGVGFAPRAIGAIFGLQNSGD 637
Query: 561 KCFPIENGLSYVVFKVTNSKV-GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
PI + +V K+ + G + + F LTQ + ++ L+ V +
Sbjct: 638 LTAPIREDVGVIVGKLNSKNPAGEIGDYTAFQRQLTQGAAQRSTYQIMMALQELVGVKDY 697
Query: 620 D 620
Sbjct: 698 R 698
>gi|312890294|ref|ZP_07749831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mucilaginibacter
paludis DSM 18603]
gi|311297064|gb|EFQ74196.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mucilaginibacter
paludis DSM 18603]
Length = 704
Score = 94.9 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 73/599 (12%), Positives = 153/599 (25%), Gaps = 38/599 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFINS 59
+ +R+ + + + F+ + S ++ V V +K+ F
Sbjct: 4 MGFLRERF-GKIVAAIIGLALFAFIATEVVQYGKSYFNGSANDVGEVDGEKIKKDDFDKK 62
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
Q Q+ G + + S + + VS L + I+ +GL I
Sbjct: 63 VDQNTANFKQQSGQGAINPQITSY-IQETTWSQTVSQLILQKEIDKLGLVVGVDETKDMI 121
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ F + + FV M +
Sbjct: 122 SGPTPNQLILQNFGNQQTGQFDRSALNEFLGRLRVAKADDPIKATWANFVTQMIEGKKIE 181
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
++ V + + + SY
Sbjct: 182 KYITLVKNGLYVNSLDAKDDYEAKNKLVNFKYVALDYASIPDNKITLTDDDYKSYYDEHK 241
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ + + E+ + A + + + +L+ + D++ + L
Sbjct: 242 KQFKNQQELRSLAYVAFDASPSKDDSAAVKEQITKLIPEFKAATDDSLFVAVNAESKTPL 301
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
++ L DS+ A KG + Y +A + +
Sbjct: 302 IYQKKGQLD---------------PQIDSLMLNASKGFTYGPYFSNGYYKVAKLVD---- 342
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
F + + +A ++ + + L S + L +D
Sbjct: 343 --SRFSPDSVKARHILISIQAEGSPEKAVAKADSLKKLIQSGKKTFAEL----APLNSID 396
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
G +F + V G V + E + +
Sbjct: 397 KGSAVKGGDLGTFARGSMIPVFEDAVFNGKKGDIKIVTSQYG----VHLIEILDQKGSSK 452
Query: 480 EEVLTDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
+ V K + + KT SKA + +K NF + K G + T +N +
Sbjct: 453 VVKVAVVDKPLEPSSKTKSAAYSKAQAFLGSLNKN--NFDEEVKKAGLTKKTAEDLNGLA 510
Query: 539 NENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
+ D + F E G YV+ ++T K V + +
Sbjct: 511 SSAPGLDNIRDLVRWAFKADKGDFTDQVYEPGNEYVIAQLTEIKPKGVLSLEAVKKQIQ 569
Score = 85.7 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/324 (12%), Positives = 98/324 (30%), Gaps = 18/324 (5%)
Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
++G ++ LG+F++ + D++F+ K I H+ I
Sbjct: 396 DKGSAVKGGDLGTFARGSMI-PVFEDAVFNGKKGD-----IKIVTSQYGVHLIEILDQKG 449
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
S + + + ++ + + DE ++ + ++
Sbjct: 450 SSKVVKVAVVDKPLEPSSKTKSAAYSKAQAFLGSLNKNNFDEEVKKAGLTKKTAEDLNGL 509
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
G + L+ F D D P Y+ Q+ E P LE
Sbjct: 510 ASSAPG-----LDNIRDLVRWAFKADKGDFTDQVYE-PGNEYVIAQLTEIKPKGVLSLEA 563
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
V ++ + A++++ K + + + + + I +
Sbjct: 564 VKKQIQPAVLNIAKAKQLAPK----LQAATNGSSTIDQVAQKSNTQVTPVQNIVFANPIV 619
Query: 542 KFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
G + I +F V + YV + P+ + + Q++
Sbjct: 620 PGAGQENKLIGAIFGSQPNKVSKVIEGDRGVYVYVVDSFLNPAPLNNALRQKEQIGQILL 679
Query: 600 KDLLDSVIAYLKSQYSVTVHDNLI 623
+ ++ LK++ +V + +
Sbjct: 680 QRAEGGILEALKNKANVKDYRAKV 703
>gi|255007876|ref|ZP_05280002.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
gi|313145584|ref|ZP_07807777.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
gi|313134351|gb|EFR51711.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
Length = 712
Score = 94.9 bits (233), Expect = 4e-17, Method: Composition-based stats.
Identities = 68/611 (11%), Positives = 171/611 (27%), Gaps = 41/611 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGETLSAQDYQNMVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ +I G + ++ + ++ + V+ +++ + +G+ + I
Sbjct: 61 EYTEVIKFSSGMS-SLNDEQTNQVKDEVWRSYVNNKLIEKEAKKLGITVSKAEIQSIINE 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L+ +K +
Sbjct: 120 GVNPLLQQTPFRNPQTGAFDKDMLKKFLSDYSKMDKTKMPSQYVEYYEGMHKLWSFVEKT 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V A + S+ +L
Sbjct: 180 LIQSRLAEKYQALVTKALFSNPVEAQDAFDARVNQSDVLLAA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I + EL+ Y K KE++ + + + + A
Sbjct: 222 --VPYSSIVDSTITVKESELKDLYNKKKEQFKQ--YVETRNIKYIDVQVTASAEDKAAIQ 277
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
++ + + D + S + S G V
Sbjct: 278 QEVTDYTNQLATANGDYTTFIRSTGSEYPYVDLYYTKRAFPSDVVARMDSASVGQVYGPY 337
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
N + SF+ + K A + + ED + + + + ++
Sbjct: 338 YNAGDNTINSFKVLSKVAAADSVQFRQIQVYAEDAAKTKVLADSIYTAIKGGADFTALAK 397
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ A + L F + +++ VAL G+ + +Q+ +
Sbjct: 398 KYGQTGESNWISSANYENAQIDGDNLKFITTINNLGVNELSNVALGQGN-IILQVTDKKA 456
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+D+ V+ D+ + + + + + + + G LL N
Sbjct: 457 VKDKYKVAVIKRAV-DFSKETYNKAYNDFSQFIAANPTV--EKMAANAEEAGYKLLERND 513
Query: 534 INRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ ++ + + F+ V + +V + N + +
Sbjct: 514 LYSSEHGIGGIRGTKEALKWTFAAKPGEVSGLYECGESDRMLVVGLVNVIEEGYRPLAQV 573
Query: 591 ISYLTQMMNKD 601
L + +D
Sbjct: 574 QDQLRAEIIRD 584
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 29/247 (11%), Positives = 63/247 (25%), Gaps = 5/247 (2%)
Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL--PLVDFAGKDVKGKEVAAI 433
I +A + KE Y + + + + + + + L++ + I
Sbjct: 465 VIKRAVDFSKETYNKAYNDFSQFIAANPTVEKMAANAEEAGYKLLERNDLYSSEHGIGGI 524
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
++ L F + V + I R L +V ++ +
Sbjct: 525 RGTKEALKWTFAAKPGEVSGLYECGESDRMLVVGLVNVIEEGYRPLAQVQDQLRAEIIRD 584
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
K AE++ + + K+ + S+ +
Sbjct: 585 KKAEKIMADMKAANATSFDQYKSM---ANAVSDSVKHVTFAAPAYVAALRSSEPLVGAYA 641
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
S PI+ V +V K + M+ L + L +
Sbjct: 642 SVADINKLSAPIKGNGGVFVLQVYAKDKLNETFDAKAEEVTLENMHARLAARFMNDLYLK 701
Query: 614 YSVTVHD 620
V
Sbjct: 702 GDVKDKR 708
>gi|315452770|ref|YP_004073040.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter felis ATCC
49179]
gi|315131822|emb|CBY82450.1| peptidyl-prolyl cis-trans isomerase D [Helicobacter felis ATCC
49179]
Length = 482
Score = 94.5 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 64/400 (16%), Positives = 133/400 (33%), Gaps = 21/400 (5%)
Query: 5 IRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++K + V I++ + + WG + V VGR + K
Sbjct: 1 MQKHKKYLVVTIWISTIAFIAAGMIGWGQYSFSMASGS---VAKVGRVLITSEELEMERK 57
Query: 62 QELGMISQKIG--FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ + SQ I ++ ++ ++GL+K L L++ A L D+GL + EI
Sbjct: 58 RLVDAYSQSIPNFKDLDEKQIAAMGLEKTALRMLINQAYLKNLALDLGLGVSDAEIATEI 117
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+S LF + F D++ L + ++ L V G+F P
Sbjct: 118 QKSALFQKDGH-FDVDLYKKVLQDNHYRPALFEENVKNALILQKVSGLFPSATTPLEKEA 176
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ A + L +++++K+ Y+ P + +
Sbjct: 177 FTYP----LKIQDRISIKILEASHAPIQLEESALKAYYDQHKNTYKKPTRYTLQTLWIKP 232
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
I L+ Y+ K Y + + ++ D K+ L
Sbjct: 233 KTATLDQSI----LRKYYQDRKSNYTDAQGKLETFEKAKDRVIHDYNQAQAKENALKQYL 288
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
A ++G S +P + D+ + G+ + GY++ +
Sbjct: 289 ALKRGNLNPKKE----SFTDLPYGTDIDTKIIAMQPGEVLKPLEYKEGYLVVKLVEKSSG 344
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
SFQE K +I ++ + +K++ ++ +
Sbjct: 345 LLKSFQEAKSEIMATLQAEAQQKWLKQEAQKQVKNFQGND 384
>gi|160892220|ref|ZP_02073223.1| hypothetical protein BACUNI_04684 [Bacteroides uniformis ATCC 8492]
gi|270296161|ref|ZP_06202361.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317480738|ref|ZP_07939824.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_1_36]
gi|156858698|gb|EDO52129.1| hypothetical protein BACUNI_04684 [Bacteroides uniformis ATCC 8492]
gi|270273565|gb|EFA19427.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316903079|gb|EFV24947.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_1_36]
Length = 712
Score = 94.5 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 71/616 (11%), Positives = 170/616 (27%), Gaps = 51/616 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + + F +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGESISAQDFQALVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ +I G S+ ++ + ++ V+ +++ + +GL + I
Sbjct: 61 EYTEVIKFSSGNSALSDE-QTNQIKDEVWRTYVNNKLIEKEAKKLGLVVSKAEIQAIINA 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L K + +
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQMPSQYAEYYESMYKFWSFLEKS 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V A + S+ +L
Sbjct: 180 LIQARLQEKYQALITKSLFSNPVEAQDAFDARVEQSDLLLAA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKK 292
+ + I I + +L+A Y+K KE++ + + A++ K+
Sbjct: 222 --VPYSSIVDSTIVIKDSDLKAAYDKKKEQFKQYVETRNIKFIDVQVTASAEDRAALQKE 279
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+++ + + + S+ D+ V G +
Sbjct: 280 MEEYTEQLTANPSDYTTFIRSTGSEAPYTDLFYTTKSLPADVTARLDSVAVGGVFGPYYN 339
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIV 411
VS+ + + + R + + E K L + + + K
Sbjct: 340 VSDNTLNSFKKLATAAMPDSIEFRQIQVVAEDAEKTKTLADSIYNAIKGGASFAEVAKKY 399
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + +G ++ L + + T + + +Q+
Sbjct: 400 GQTGEPTWISSANYEGAQI-----DGDNLKYITAVTTLGQNELTNLALGQANVILQVTNK 454
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGASL 528
+D V + V+ ++E SKA ++ + ++ G L
Sbjct: 455 KAVKD------KYKVAVIKRPVEFSKETYSKAYNEFSQFIAANNTLEKMIANAEDAGYKL 508
Query: 529 LTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQ 585
L + ++ D + F V + +V V + +
Sbjct: 509 LDRADLYSSEHGIGGIRGTKDALKWAFEAKAGEVSGLYECGESDRMLVVGVASIVPEGYR 568
Query: 586 EKDKFISYLTQMMNKD 601
L + +D
Sbjct: 569 PLALVKDQLRAEILRD 584
>gi|325297347|ref|YP_004257264.1| peptidyl-prolyl cis-trans isomerase [Bacteroides salanitronis DSM
18170]
gi|324316900|gb|ADY34791.1| peptidyl-prolyl cis-trans isomerase [Bacteroides salanitronis DSM
18170]
Length = 711
Score = 94.5 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 65/614 (10%), Positives = 169/614 (27%), Gaps = 46/614 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F+ L G V V +K+ +
Sbjct: 4 LQSIR--SKGPLLVIVIGLALFAFIAGDAWKVLQPHQGRQDVGEVNGEKLSAQEYQQLVD 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ +I G + + + ++ + V+ + E +GL+ + I
Sbjct: 62 EFSEVIKLTNGLN-SLTEDQLTNVKDQVWNTYVTNQLIASEAEKLGLKVTDKELQAIIDE 120
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L EY + + + V G
Sbjct: 121 GTNPLLMQTPFRNPQTGAFDKDMLKKFL-------VEYANLGSSQMPAQYVEYYQTMGNF 173
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
+ + + R + +
Sbjct: 174 WKFVEKTLKASTLASKYQNLIAKSLISNPV-------------AAEDAFKSRTAQSDILL 220
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I +S+ E++ Y + KE Y P Q + + +D ++ K
Sbjct: 221 AGVPYASISDSTITVSDSEIKDLYNERKEAYKQPVETRDIQFIDVHVLPSDADRAAVLKE 280
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+ + + K+ D + S + + + + + S V
Sbjct: 281 AT--EYSNQLDKTTGDYAAFIRSTGSAVNYADFAINKTALPQDVVARLDSTSLNEVYGPY 338
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
N +F+ + K A + + V + + + ++
Sbjct: 339 YNSSDDSYNAFKILAKTTAPDSIQFRQIQVVADTEAKRTALADSIFDAIKGGADFAEIAK 398
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ +A + + + P+++ + L + + Q+
Sbjct: 399 AYGQTGESTWVNAMSWESAALDADNTTYIKTLINQPVNELKNLQLGQVNLII-QVTGKKA 457
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGASLLT 530
+ V V+ ++E S A ++ + D+ + G +++
Sbjct: 458 MKP------KYQVAVIKLPVEFSKETYSDAYNKFSQFVAQNTTVEDMKKNAEEAGYTVIP 511
Query: 531 TNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ ++ + + +F V + +V +
Sbjct: 512 RSDFRSDEHYVGGVRSTQEALRWIFDAKEGEVSPLYECGENDHMMVVGLERVNKKGYVNI 571
Query: 588 DKFISYLTQMMNKD 601
+K + L + +D
Sbjct: 572 NKVANTLKAEIIRD 585
Score = 54.9 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/332 (12%), Positives = 103/332 (31%), Gaps = 12/332 (3%)
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
++K G F ++A+ G++ + + S + + D+ + K ++
Sbjct: 385 DAIKGGADFAEIAKAYGQTGESTWVNAMSW----ESAALDADNTTYIKTLINQPVNELKN 440
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQM-RITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ V+ I + K +A + + E + Y + +F+A T+++++ +
Sbjct: 441 LQLGQVNLIIQVTGKKAMKPKYQVAVIKLPVEFSKETYSDAYNKFSQFVAQNTTVEDMKK 500
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + + + V + ++ L +F + + M V
Sbjct: 501 NAEEAGYTV--IPRSDFRSDEHYVGGVRSTQEALRWIFDAKEGEVSPLYECGENDHMMVV 558
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + +V +K + K A ++ S+ +G +
Sbjct: 559 GLERVNKKGYVNINKVANTLKAEIIRDKKAAQLMSQMQGFNSLDQVKGMSNAVSDSVKHV 618
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
+ I+ IS S PI+ + + G +
Sbjct: 619 TFSAPAYIS-----VTHASEPAISAYASKAETGKVSAPIKGNAGVYMIQAYAKDNGTEEF 673
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K M + + I L+ + VT
Sbjct: 674 DAKKEEASLSSMAPNYANQCIYELREKAKVTD 705
>gi|145220375|ref|YP_001131084.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris
vibrioformis DSM 265]
gi|145206539|gb|ABP37582.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
phaeovibrioides DSM 265]
Length = 704
Score = 94.5 bits (232), Expect = 5e-17, Method: Composition-based stats.
Identities = 82/619 (13%), Positives = 171/619 (27%), Gaps = 46/619 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVV--SVGRQKVPFSSFIN 58
+ +R + + I L + WG+ A F G SV + +S +
Sbjct: 4 MSNLRDKT-HIILYILLASFLGLIVFEWGMDFAGFGGRGGRGQNAGSVNGVSISYSQYDQ 62
Query: 59 SWKQELGMISQ-KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++Q + G ++ E + + ++ + +V L+Q + G+ G +
Sbjct: 63 FYRQFSENYRRSNPGADMSPE--IELRIQEQAWNTVVDQMLLEQQFQKFGITVQDGEILA 120
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I R F+ ++ + + + +++ + +
Sbjct: 121 AINRPDPPQVIAGNFTDPATAQIDRQKLDAARRDPQNSEMWVQVEEIIRRELKIDKLIRA 180
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L E ++ I P +
Sbjct: 181 LRTMEHVTDLELETLVRQQYTRMAASFIPVP------------------FSFAGDDSKYP 222
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ K+ + EL AE Y + Q Q+E +
Sbjct: 223 VKEDEIKRYYGEHRELFAEAPSRSSDYVFFPLTPSAQDSLAAQQEFASIRAGFATTRNDT 282
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
Q S I+ ++ P A S + G I S Y + + ++
Sbjct: 283 DFVRMQSDRSSSINETLDRSDFSPVAGAALFGSSSLRAGSIIGPIADSGTYRLLKIKSVT 342
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ + I +K + + L G + E++RR
Sbjct: 343 TARKPVARASHILIRFNPNSRADIQKGRALSDMILRELKAGGNFAELARRYSADPGSAA- 401
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
G + +P +F P + V G ++ + DR
Sbjct: 402 --RGGDLGWFRSDRMVPEFADAVFA----SKPGAIVGPVQTQFGLHII-----KVAGFDR 450
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
K V+ + +TAE + +A ++ ++G + L TT Q R
Sbjct: 451 KAVVASEIVRTIRPSSETAEGIRRRAMVFQMDAKEKG--MDESASADKLPLETTGQFGRH 508
Query: 538 DNENKFFGYDGISQ-VFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFI 591
D I F + IE + V ++T K
Sbjct: 509 MPIAAIGYNDKIDDFAFRSSEGDL-SDVIETPKGFYVMRLTGKNDSGYRKLDDDLKAGIT 567
Query: 592 SYLTQMMNKDLLDSVIAYL 610
+ + + + + + +A L
Sbjct: 568 TEIIKEKKGEFIKNRLASL 586
Score = 80.3 bits (195), Expect = 8e-13, Method: Composition-based stats.
Identities = 46/342 (13%), Positives = 102/342 (29%), Gaps = 27/342 (7%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ LK G F +LA LG F + + AD++ +K G +
Sbjct: 377 LRELKAGGNFAELARRYSADPGSAARGGDLGWFRSDRMV-PEFADAV-FASKPGAIVGPV 434
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
FG I V + V +I +R + + + + + A MD
Sbjct: 435 QTQFGLHIIKV-----AGFDRKAVVASEIVRTIRPSSETAEGIRRRAMVFQMDAKEKGMD 489
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
E + +K+ A + + + P G
Sbjct: 490 ESASADKLPLETTGQFGR-------HMPIAAIGYNDKIDDFAFRSSEGDLSDVIETPKGF 542
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
Y+ ++ + +++ + + K E + ++ L
Sbjct: 543 YVMRLTGKNDSGYRKLDDDLKAGITTEIIKEKKGEFIKNRLASLAAS--PGATLAAIAAA 600
Query: 523 NLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
+ S+ + + I D +G + + P+ + P++ Y V +V++
Sbjct: 601 DSSFSMFSASDIRWSDGFIPGYGVDRPLVEAMAGMPLARL-SEPVQIQSGYAVCEVSSRA 659
Query: 581 VGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ EK + + + L + + L+ Q +
Sbjct: 660 LPEGLDIKTEKAGIAPQVLGLKQEQLFSAYFSALRKQAKIED 701
>gi|225629761|ref|ZP_03787708.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Muscidifurax uniraptor]
gi|225591385|gb|EEH12478.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Muscidifurax uniraptor]
Length = 445
Score = 94.2 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 82/454 (18%), Positives = 183/454 (40%), Gaps = 22/454 (4%)
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ +Q + ++ R VD + + V I +P + L +E+ K ++ PEY+ YI
Sbjct: 11 EKIDEQIYKSRYQTRVVDIVKITEDAVTNIPEPDDQALLDLYERNKSHFYYPEYRTAQYI 70
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
E +I+IS++E+ E+ + K + ++ +
Sbjct: 71 SLGQKYFEDQIKISDEEVDGIIEQQELKNQRDIFNA---IFSTKEEAETARRAFEEGKTS 127
Query: 296 FIQLAEEQGKSL-SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
F Q+ EE GK+ + + + +K+++P+ K G+ + V+ SFG+ I V
Sbjct: 128 FEQIVEEFGKAKLEETRVNNITKDFLPED--VREKVFALKVGEVSEVLASSFGWHIVKVE 185
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ ++KKDI + + K+ E+V + ++ + G+ ++EI +
Sbjct: 186 SAHQISDEDLVDLKKDIKSVLTNQKSFERVNDFINQVNYKIYNGSEIEEILSEYNLPIQT 245
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ VD +GKD G V +F + + V+I + +P
Sbjct: 246 IGPVDASGKDQSGNNVGDSGDLISFIFSREKDQKG-----YFKGVGDAVVSVKIVDIVPP 300
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ + EE + W++ E + ++ ++ ++ D+ + G L+ Q+
Sbjct: 301 KLQSFEEGKALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEEIQGVELVKGQQM 356
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFIS 592
+R + + + + + ++F+ PI+ ++ + S G + D
Sbjct: 357 HRNKVDQQNYPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSSNGKLNMLDTGKR 416
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ L + +I+YL+S+Y V V+ ++
Sbjct: 417 VMIS-----LKEQLISYLESKYKVEVNHAILDDI 445
>gi|208779446|ref|ZP_03246792.1| numod1 domain family protein [Francisella novicida FTG]
gi|208745246|gb|EDZ91544.1| numod1 domain family protein [Francisella novicida FTG]
Length = 477
Score = 94.2 bits (231), Expect = 6e-17, Method: Composition-based stats.
Identities = 70/507 (13%), Positives = 157/507 (30%), Gaps = 40/507 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ + I ++ + F+I G++ ++ S V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A + + IL ++ + + + + I
Sbjct: 61 AQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ +F KD KFS + +A G + + + T + V ++
Sbjct: 104 FTNSMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTFIVTDYDT 162
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY +
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPADFKSQIKPSQQDLQSYYDSHKNEYITPAQKTISYFIITK 222
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K +IS DE++A Y+ +KE + + + ++ + +L++ ++ Q
Sbjct: 223 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTI-----QKIIQNRHALEQFNEYTQN 277
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + + G I D + V + F + I +
Sbjct: 278 IDSIKYTKLEKQFGKAKTATIVDN----------NDTTISNVANSQFFINSDKYATITIA 327
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + K K +E+ + + S
Sbjct: 328 DNKLLVYQVDNSIKATQQKLVDIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKS 387
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
F + A + ++ H +G ++ + P D+
Sbjct: 388 FKQATINSDSQAFGKDFNDYVIFNSN-----NQYHDYKTDNGDIYVYKVTKIEPITDKT- 441
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQL 506
+V + V +K + + Q+
Sbjct: 442 TQVPSQVIDAYKQEELNFYLQVIKQQI 468
>gi|89256253|ref|YP_513615.1| hypothetical protein FTL_0896 [Francisella tularensis subsp.
holarctica LVS]
gi|254367592|ref|ZP_04983613.1| hypothetical protein FTHG_00855 [Francisella tularensis subsp.
holarctica 257]
gi|89144084|emb|CAJ79335.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica LVS]
gi|134253403|gb|EBA52497.1| hypothetical protein FTHG_00855 [Francisella tularensis subsp.
holarctica 257]
Length = 476
Score = 94.2 bits (231), Expect = 6e-17, Method: Composition-based stats.
Identities = 69/507 (13%), Positives = 148/507 (29%), Gaps = 41/507 (8%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-TVVSVGRQKVPFSSFINS 59
ML+ + I ++ + F+I G++ ++ S V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIVVISISFIFVISGMTFFFTNIGSSRAYVAKVGDNEISSQQFQQY 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A + + IL ++ + + + + I
Sbjct: 61 VQS-----------------ATTEEQKRAILSQMIDQYLILADAQRHDIVVSKLALQSAI 103
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+P+F KD KFS + +A G + + + T + V ++
Sbjct: 104 FTNPMFFDKDGKFSAEKLKQVVAYLG-GMDKLEQILAQNIQATIIPKTIVDTSIVTDYDT 162
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Y N+ +DY+ ++ + PS L +++ +K+ Y P K ISY +
Sbjct: 163 KLLNSIYSVNKYIDYLKVSPTDFKSQIKPS-QHLQSYYDSHKNEYITPAQKTISYFIITK 221
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K +IS DE++A Y+ +KE + + + Q +
Sbjct: 222 DNFVPKNKISEDEIKAYYQAHKELFKDFDNNAKSTIQKIIQNRYALEQFNEYTQNIDSIK 281
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ K + + V + F + I +
Sbjct: 282 YTKLEKQFGKA---------------KTATIVDNNDTTISNVANSQFFINSDKYATITIA 326
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + A K K +E+ + + S
Sbjct: 327 DNKLLVYQVDNSIKATQQKLADIKDKISKAYIEQKSQQFALQHAQNLLNDLTSGKKIDKS 386
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
F + A + ++ H +G ++ + P D+
Sbjct: 387 FKQATINSDSQAFGKDFNDYVMFNSN-----NQYHDYKTDNGDIYIYKVTKIEPITDKT- 440
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQL 506
+V + V +K + + Q+
Sbjct: 441 TQVPSQVIDAYKQEELNFYLQVIKQQI 467
>gi|34540273|ref|NP_904752.1| hypothetical protein PG0452 [Porphyromonas gingivalis W83]
gi|34396585|gb|AAQ65651.1| conserved hypothetical protein [Porphyromonas gingivalis W83]
Length = 715
Score = 94.2 bits (231), Expect = 6e-17, Method: Composition-based stats.
Identities = 69/623 (11%), Positives = 168/623 (26%), Gaps = 32/623 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
LE IR + + + + V F+I S + F V+ + +K+ +
Sbjct: 4 LEKIRGKAG--LLIVVVGVALFAFIIGDFLRSGSTFFRQSQEVVLDINGEKIKIYDYQQR 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
K +++ G + E+ L+ ++ V L Q + +GL + I
Sbjct: 62 LKAMEKR-AEQSGTKITDEQ--RASLNNQLAQQYVQDYVLGQQADKLGLTVSPEELLALI 118
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ + F+ F + + G
Sbjct: 119 IGDG---VQPSMFAQQFFSRFGINGSDRAAVNDFLNHISDKQIKLQPAEQQGYLYEIQSE 175
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Q+ + + + + +A + P +
Sbjct: 176 WQSVEKQIADTRMQEKLGALLTRSYAINDIDA---------RYESGVPSREVAVAQAPIS 226
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ I +++E++ Y ++KE + T+ Q + + + + + + ++
Sbjct: 227 VIGDTSIRATDEEIKKYYNEHKEFFVQKYPSTIVQYISSQVVPSAQDMANAEVEMQKVRT 286
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH--GSFGYVIAHVSNIK 357
+Q + ++ K P + + + T I I + N
Sbjct: 287 EMQQQSDVEALARNYSDKFVSPSFLTSAELDRMNLGVSITEFIKTATPGEVNIPMLENNH 346
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
S + + + I L L G +R
Sbjct: 347 YSLVKLVAKKSGFESLNVAIIALDSANLSKADSLCNALNEGGDFAAAARTFSADPTSRET 406
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ ++ E + ++ + V + K P
Sbjct: 407 GGVLTFPNQFTQMPDSTITEAMAQQLHLDTLFSVPSNRVIKMNQDKFVFLAKAFNPKPAV 466
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL---GASLLTTNQI 534
+ ++E +K + E GK F + + G S+ ++
Sbjct: 467 D----KYKIAYIGVDANFSDETYNKKFMELNEMLNSGKPFPKLAEQARSKGLSIEENAEV 522
Query: 535 NRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVF-KVTNSKVGPVQEKDKFI 591
+ + +S + V G Y+V V + + +K
Sbjct: 523 TVFSDHVGNIPSSREIVSWALKAEEDEVNEKIFRCGTDYLVIAAVKDQIPSGYRPVEKIK 582
Query: 592 SYLTQMMN-KDLLDSVIAYLKSQ 613
+ + + + ++A LK++
Sbjct: 583 EQIANQLRVEKQGEKLVADLKAK 605
>gi|298207424|ref|YP_003715603.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Croceibacter
atlanticus HTCC2559]
gi|83850060|gb|EAP87928.1| peptidyl-prolyl cis-trans isomerase, PpiC-type [Croceibacter
atlanticus HTCC2559]
Length = 700
Score = 94.2 bits (231), Expect = 6e-17, Method: Composition-based stats.
Identities = 70/515 (13%), Positives = 144/515 (27%), Gaps = 31/515 (6%)
Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
+ + I P + + + + ++ M G
Sbjct: 212 QVSKDEIKAYIKAHPDKYTVEAGRDLQYVLFEEKASDADVEDMKAEVAAMAENRVESGDT 271
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ G++ S L +Y N + N + + Y+D
Sbjct: 272 LLGLKNSKNLETFVNANSDVRYDGNYKFKKNLPKDFADELFNLNKGEVYGPYRDGNTLKL 331
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ K + I IS LQ + + + + + + +
Sbjct: 332 SRLEDTKSMPDSAKARHILISYTGLQTATDVERTEEEAKQ--------LADSLASVLRRD 383
Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
K + ++ LG F+ + D +F + V+ FG+
Sbjct: 384 RNKFTDFATTYSADKVSGAKGGDLGFFTPGRMV-PVFNDYVFQNNEGDL--GVVKSQFGF 440
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I + +E +A +R +ASEK D + S + +
Sbjct: 441 HIIDIQEQTD------KEKAVKLATIVREIEASEKTTNDLFAETTKFEIAASKGDFAELA 494
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
K + V G + + + + ++ F ++ + +P G Y+ VQ+
Sbjct: 495 KSSDLTARPVK--GVKALDENIPGVGRQRSIVSWAFNEETNVGDVKRFDVPQG-YVVVQV 551
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+E+ K K AE + S+ G +I +N G +
Sbjct: 552 TGENEKGLMNVEDASITATPIIKNNKKAEILKSRIK---------GNTLAEIAQNQGVQI 602
Query: 529 LTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
T+N +N G + + FS YVV V ++ P+
Sbjct: 603 QTSNALNLKSPTLTGAGNEPEVVGAAFSLKEGATSAPLQGKNGVYVVKVVKRNEATPLDN 662
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
F + + LK + + +
Sbjct: 663 YKAFSFQESNKRTSGVNTKAYNALKEATEIEDNRS 697
Score = 93.0 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 81/575 (14%), Positives = 173/575 (30%), Gaps = 57/575 (9%)
Query: 24 PFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
F++ + + S G +TV +VG + + + F ++ + S+++G ++ +A
Sbjct: 24 SFVLADVIRNGGFSSSKGENTVATVGGENIDRTEFAK----QVDLYSKQLGPNASTMQAV 79
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG----EIARSPLFHGKDNKFSHDVF 137
++ D V L Q E +G+E ++ ++ +P F ++ FS
Sbjct: 80 -----NRVYDAKVREVVLAQQFEKLGIEVSPEQLKATMALQLEGNPTFSDENGTFSEQKL 134
Query: 138 VSRLA-------REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
LA + K Y D T M G+ + L QA
Sbjct: 135 QEYLANIKASSPQAYEQWKNYEDQVALAAKETQYFNMIKAGVGATLLEGKQAYLLENNTV 194
Query: 191 SVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
V+Y+ + + A S + + + + D Y + + Y+LF+ + +E
Sbjct: 195 DVEYVKIPWTAVDESEAQVSKDEIKAYIKAHPDKYTVEAGRDLQYVLFEEKASDADVEDM 254
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
E+ A E E + G K + E + SD
Sbjct: 255 KAEVAAMAENRVESGDTL------------------------LGLKNSKNLETFVNANSD 290
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
+ K KG+ ++ + + ++ +
Sbjct: 291 VRYDGNYKFKKNLPKDFADELFNLNKGEVYGPYRDGNTLKLSRLEDT---KSMPDSAKAR 347
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
I + + V+ + ++ S+ R + D G
Sbjct: 348 HILISYTGLQTATDVERTEEEAKQLADSLASVLRRDRNKFTDFATTYSADKVSGAKGGDL 407
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
P + +F + + V G I + D++ L + ++
Sbjct: 408 GFFTPGRMVPVFNDYVFQNNEGDLGVVKSQFG----FHIIDIQEQTDKEKAVKLATIVRE 463
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD-- 547
+ + A E + +F ++ K+ + + +D G
Sbjct: 464 IEASEKTTN-DLFAETTKFEIAASKGDFAELAKSSDLTARPVKGVKALDENIPGVGRQRS 522
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
+S F+ + + YVV +VT
Sbjct: 523 IVSWAFNEETNVGDVKRFDVPQGYVVVQVTGENEK 557
>gi|329962043|ref|ZP_08300054.1| hypothetical protein HMPREF9446_01629 [Bacteroides fluxus YIT
12057]
gi|328530691|gb|EGF57549.1| hypothetical protein HMPREF9446_01629 [Bacteroides fluxus YIT
12057]
Length = 712
Score = 93.4 bits (229), Expect = 9e-17, Method: Composition-based stats.
Identities = 74/610 (12%), Positives = 168/610 (27%), Gaps = 51/610 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + V + +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETVSAQDYQAMVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ +I G S+ ++ + ++ V +++ + +GL + I
Sbjct: 61 EYTEVIKFSSGMNALSDE-QTNQIKDEVWRRYVENKLVEKEAKKLGLTVSKAELQAIIDA 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L K + +
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQMPSQYAEYYESMYKFWSFIEKS 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V D S+ +L
Sbjct: 180 LVQARLQEKYQALITKSLFSNPVEAQDAFDGRVDQSDLLLAA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I +++ +L+A Y+K KE++ + + + E +++K
Sbjct: 222 --IPYTSIVDSTITVTDSDLKAAYDKKKEQFRQYVETRNIKFIDVQVTASPEDKAAIQKE 279
Query: 294 KK--FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
+ QLA + + + Y+ A S+ + + + G +G
Sbjct: 280 MEEYTAQLAGTPADYTTFVRSTGSTVPYVDLYYTAKSLPADVAARLDSVSVGGVYGPYYN 339
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
N SF D +I +E + + + + K
Sbjct: 340 VTDNTINSFKKLASATLPDSIEFRQIQVVAEDAAKTKSLADSIYNAIKDGADFAEVAKKY 399
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + +G ++ L + + T + + +Q+
Sbjct: 400 GQTGEPTWISSANYEGAQI-----DGDNLKYITTITTLAQNELTNLALGQANVILQVTGK 454
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN---LGASL 528
+D V + V+ ++E SKA ++ + N G L
Sbjct: 455 KATKD------KYKVAVVKRPVEFSKETYSKAYNDFSQFIAANNTLEKMAANAEDAGYRL 508
Query: 529 LTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQ 585
L + ++ D + F V + +V V + +
Sbjct: 509 LDKTDLYSSEHGIGGVRGTKDALKWAFEAKAGEVSGLYECGESDRMLVVGVASIVPEGYR 568
Query: 586 EKDKFISYLT 595
L
Sbjct: 569 PLALVKDQLR 578
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/247 (10%), Positives = 68/247 (27%), Gaps = 5/247 (2%)
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ + + E + Y +F+A ++++++ + L +D + +
Sbjct: 467 KRPVEFSKETYSKAYNDFSQFIAANNTLEKMAANAEDAGYRL--LDKTDLYSSEHGIGGV 524
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
+ L F + V + +P R L V ++ +
Sbjct: 525 RGTKDALKWAFEAKAGEVSGLYECGESDRMLVVGVASIVPEGYRPLALVKDQLRFEILRD 584
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
K AE++ + ++ KN + S+ +S
Sbjct: 585 KKAEKIMADMKAANATSFEQYKNM---ANAVSDSVKHVTFAAPAYVPALRTSEPLVSAYA 641
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
S PI+ V + + + M+ + + ++ L +
Sbjct: 642 SVAELNKLSAPIKGNGGVFVLQPYAKEKLNETFNQETEETTLAAMHARMANQFMSDLYLK 701
Query: 614 YSVTVHD 620
V
Sbjct: 702 ADVKDKR 708
>gi|325105922|ref|YP_004275576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans
DSM 12145]
gi|324974770|gb|ADY53754.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans
DSM 12145]
Length = 699
Score = 93.4 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 58/508 (11%), Positives = 137/508 (26%), Gaps = 27/508 (5%)
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ D K + + + K + T D + +
Sbjct: 211 VLDLASIKDADVKLTDADYKEYYEKNKYRFKNQTETRTFEYVVFDASPSKQDTLEAKAKI 270
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
A+ F + Y+ +N IA L + N
Sbjct: 271 DKIAEGFRTTDNDSLYVAINADTKEPIAYQKKGTLEPALDSVMFNASKGYVYGPYIADGA 330
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ + + + + +AD ++KG F +
Sbjct: 331 YKVAKLVDSRISPDSVKARHILLNPATEGGMDKAK-------SKADSIKNLIQKGASFAE 383
Query: 299 LAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
LA+E G S LG+F++ + D++F G V + + +
Sbjct: 384 LAKEFGTDGSKDSGGDLGTFARGSMV-PKFEDAVF----NGPVGQVFTLETQFGVHVIEI 438
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
K + +V ++ + + + + +E ++++ IV +
Sbjct: 439 QKQIGSSKVVKVAVVDKQIAPSSQTEQAAYQKAQAFIAAVKDQKQFEENAQKQGIVKLVA 498
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
V + + ++ + D + + Y+ + P
Sbjct: 499 DDVT-----PLQGGLPGLDDARSIVRWAYQADKGDISNEIFTVG-SKYVVAVLTNVKPEG 552
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
LE+V ++ + + KA++ + N + + LG + + I
Sbjct: 553 TLPLEQVKKQIEPSVMHLVKGRMLKEKADKALS----GASNLAQVAQKLGVTTSSVENIV 608
Query: 536 RMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
+ + + + +F + + + YV + + K
Sbjct: 609 FANPIIPGYSQENIVVGSIFGSQPNKLSKAIVGDRGVYVYTVKSFIEPAAFTNAAKSKES 668
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
L Q M+ +V LK +
Sbjct: 669 LVQTMSSQADGAVFQVLKENAKIKDLRA 696
Score = 91.8 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 63/567 (11%), Positives = 152/567 (26%), Gaps = 38/567 (6%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S + F +S + V +K+ + F Q ++G N + +
Sbjct: 34 SGSGFIADANSKIGEVDGEKISYQDFNTRVDQNSQQFRAQMG---NLNAQMQSYIVENTW 90
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ + S L++ E +GL ++ + +P + + A + K
Sbjct: 91 NQMTSSIILEKQTEKLGLTVGTAELFDLMFDNPSPQMQQIFADPNTGAFNRANAISSRKS 150
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ L + + ++ +
Sbjct: 151 ADTEPSGQLKAQ--WVSLEDNILHERSNQKYLALVRNGVYANSLDAKDDYTNKNKLVNFD 208
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
++ + + + Y + + + + E E ++
Sbjct: 209 YLVLDLASIKDADVKLTDADYKEYYEKNKYRFKNQTETRTFEYVVFDASPSKQDTLEAKA 268
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
++++ + +++ +A ++ +L DS+
Sbjct: 269 KIDKIAEGFRTTDNDSLYVAINADTKEPIAYQKKGTLEPA---------------LDSVM 313
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
A KG Y +A + + + S I +K K
Sbjct: 314 FNASKGYVYGPYIADGAYKVAKLVDSRISPDSVKARH---ILLNPATEGGMDKAKSKADS 370
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
++ + G S E+++ D G + +P E +F + P+
Sbjct: 371 IKNLIQKGASFAELAKEFGTDGSK----DSGGDLGTFARGSMVPKFEDAVF-----NGPV 421
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
+ T+ G V + E + V K E+ + + Q +
Sbjct: 422 GQVFTLETQFG----VHVIEIQKQIGSSKVVKVAVVDKQIAPSSQTEQAAYQKAQAFIAA 477
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENG 568
K+ K F + + G L + + + + + + G
Sbjct: 478 VKDQKQFEENAQKQGIVKLVADDVTPLQGGLPGLDDARSIVRWAYQADKGDISNEIFTVG 537
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLT 595
YVV +TN K ++ +
Sbjct: 538 SKYVVAVLTNVKPEGTLPLEQVKKQIE 564
>gi|224538711|ref|ZP_03679250.1| hypothetical protein BACCELL_03605 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519679|gb|EEF88784.1| hypothetical protein BACCELL_03605 [Bacteroides cellulosilyticus
DSM 14838]
Length = 712
Score = 93.4 bits (229), Expect = 1e-16, Method: Composition-based stats.
Identities = 75/616 (12%), Positives = 177/616 (28%), Gaps = 51/616 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + + + + +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGESLSAQDYQSLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ ++ G ++ + + ++ N V+ ++ + +GL + I
Sbjct: 61 EYTEVVKFSRGTSALTDE-ENNQIKDEVWRNYVNNKLIENEAKKLGLSVSKAELQSIIDA 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L + ++ +
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNTAQMPAQYAEYYQSMYKFWSFLEKQ 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V A AD S+ +L
Sbjct: 180 LVQTRLAEKYQALVSKSLFSNPVEAQDAFNARADQSDMLLAA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + + I++ +L+A Y+K KE++ + + + E ++++
Sbjct: 222 --IPYSSIVDSTVTITDADLKAAYDKKKEQFKQYVETRNIKFIDVQVTASPEDRDAIQQE 279
Query: 294 KK--FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
QLA G + + YI + ++ + + + G +G
Sbjct: 280 VMEYTEQLAGTPGDYSTLVRAAGSEVPYIDLYYTSKALPTDVAARLDSVSVGGVYGPYYN 339
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
N SF D +I +E + + + + K
Sbjct: 340 ATDNTINSFKKLATASMADSIQYRQIQVVAEDAAKTKTLADSIYTAIKGGADFAEIAKKY 399
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + +G + L V + T + + VQ+ +
Sbjct: 400 GQTGEATWISSANYEGAQ-----LDGDNLKYVNTITTLGKNEMTNLNLAQANIIVQVMDK 454
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGASL 528
+D V + V+ ++E SKA ++ + ++ G L
Sbjct: 455 KAVKD------KYKVAVIKRPVEFSKETYSKAYNEFSQFIASNPTLEKMVANAEDAGYKL 508
Query: 529 LTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQ 585
L N + ++ + + FS V + +V V+ +
Sbjct: 509 LDRNDLYSSEHGIGGIRGTKEALRWAFSAKTGEVSGLYECGESDRMLVVGVSAIVPAGYR 568
Query: 586 EKDKFISYLTQMMNKD 601
L + +D
Sbjct: 569 PLALVKDQLRLELLRD 584
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 49/576 (8%), Positives = 144/576 (25%), Gaps = 21/576 (3%)
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ K+ L S+ + ++ A K L + E
Sbjct: 141 DMLKKFLVDYSKMNTAQMPAQYAEYYQSMYKFWSFLEKQLVQTRLAEKYQALVSKSLFSN 200
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKE---------YIDHYTKMLSRTDVVGMF 168
+ F+ + ++ + + + Y + + +
Sbjct: 201 PVEAQDAFNARADQSDMLLAAIPYSSIVDSTVTITDADLKAAYDKKKEQFKQYVETRNIK 260
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
++ + D+ + + + + + + Y +
Sbjct: 261 FIDVQVTASPEDRDAIQQEVMEYTEQLAGTPGDYSTLVRAAGSEVPYIDLYYTSKALPTD 320
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ +++ + + + Q+V + +
Sbjct: 321 VAARLDSVSVGGVYGPYYNATDNTINSFKKLATASMADSIQYRQIQVVAEDAAKTKTLAD 380
Query: 289 ----SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
++K G F ++A++ G++ S L
Sbjct: 381 SIYTAIKGGADFAEIAKKYGQTGEATW---ISSANYEGAQLDGDNLKYVNTITTLGKNEM 437
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+ + ++ + ++ K + + + E + Y +F+A +++++
Sbjct: 438 TNLNLAQANIIVQVMDKKAVKDKYKVAVIKRPVEFSKETYSKAYNEFSQFIASNPTLEKM 497
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ L +D + I ++ L F +
Sbjct: 498 VANAEDAGYKL--LDRNDLYSSEHGIGGIRGTKEALRWAFSAKTGEVSGLYECGESDRML 555
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
V + +PA R L V ++ + K AE++ + + + F+ + + +
Sbjct: 556 VVGVSAIVPAGYRPLALVKDQLRLELLRDKKAEKIMA---DMKAAGATSFDQFKAMPEAV 612
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
S+ + S PI+ V +
Sbjct: 613 SDSVKHVTFAAPAYVPVLRASEPLVGAYASIAELNQLSAPIKGNGGVFVLQPYAKDKLNE 672
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ Q M+ + + L + V +
Sbjct: 673 TFNQETEETTLQNMHARMASQFLNDLYLKADVKDNR 708
>gi|188995374|ref|YP_001929626.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
gingivalis ATCC 33277]
gi|188595054|dbj|BAG34029.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
gingivalis ATCC 33277]
Length = 715
Score = 93.0 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 67/625 (10%), Positives = 167/625 (26%), Gaps = 36/625 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
LE IR + + + + V F+I S + F V+ + +K+ +
Sbjct: 4 LEKIRGKAG--LLIVVVGVALFAFIIGDFLRSGSTFFRQSQEVVLDINGEKIKIYDYQQR 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
K +++ G + E+ L+ ++ V L Q + +GL + I
Sbjct: 62 LKAMEKR-AEQSGTKITDEQ--RASLNNQLAQQYVQDYVLGQQADKLGLTVSPEELLALI 118
Query: 120 ARS--PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
FS ++ + +S +
Sbjct: 119 IGDGVQPSMFAQQFFSRFGINGSDRAA-------VNDFLNHISDKQIKSQPAEQQGYLYE 171
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + + ++ + P +
Sbjct: 172 IQSEWQSVEKQIADTRMQEKLGALLTRSYAIND-------IDARYESGVPSREVAVAQAP 224
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ I +++E++ Y ++KE + T+ Q + + + + + + +
Sbjct: 225 ISVIGDTSIRATDEEIKKYYNEHKEFFVQKYPSTIVQYISSQVVPSAQDMANAEVEMQKV 284
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH--GSFGYVIAHVSN 355
+ +Q + ++ K P + + + T I I + N
Sbjct: 285 RTEMQQQSDVEALARNYSDKFVSPSFLTSAELDRMNLGVSITEFIKTATPGEVNIPMLEN 344
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
S + + + I L L G +R
Sbjct: 345 NHYSLVKLVAKKSGFESLNVAIIALDSANLSKADSLCNALNEGGDFAAAARTFSADPTSR 404
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ ++ E + ++ + V + K P
Sbjct: 405 ETGGVLTFPNQFTQMPDSTITEAMAQQLHLDTLFSIPSNRVIKMNQDKFVFLAKAFNPKP 464
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL---GASLLTTN 532
+ ++E +K + E GK F + + G S+
Sbjct: 465 AVD----KYKIAYIGVDANFSDETYNKKFMELNEMLNSGKPFPKLAEQARSKGLSIEENA 520
Query: 533 QINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVF-KVTNSKVGPVQEKDK 589
++ + + +S + V G Y+V V + + +K
Sbjct: 521 EVTVFSDHVGNIPSSREIVSWALKAEKDEVNEKIFRCGTDYLVIAAVKDQIPSGYRPVEK 580
Query: 590 FISYLTQMMN-KDLLDSVIAYLKSQ 613
+ + + + ++A LK++
Sbjct: 581 IKEQIANQLRVEKQGEKLVADLKAK 605
>gi|319952479|ref|YP_004163746.1| ppic-type peptidyl-prolyl cis-trans isomerase [Cellulophaga
algicola DSM 14237]
gi|319421139|gb|ADV48248.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cellulophaga
algicola DSM 14237]
Length = 706
Score = 93.0 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 72/597 (12%), Positives = 179/597 (29%), Gaps = 59/597 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINS 59
L+ IR+ + + I + F++ G+ S+V V ++V F
Sbjct: 4 LDKIRRKTTILILII--GLALFAFVVSGIFSTNAFSGAKVGSSVADVNGEEVSIDGFREQ 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A S+ + + + V A LDQ E +G+ + ++ +
Sbjct: 62 VEVASKSYGAS---------ASSMQIVNNVYEQNVRNAVLDQQFEKLGIVVEQDQIVNFL 112
Query: 120 A------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR-------TDVVG 166
+ P F ++ F F++ +A N + +
Sbjct: 113 RTNPTYSQLPQFLNENGVFDESKFINFIADLKKNNPAGYQQWLQEEKNIIRAAKEQIYFN 172
Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV-PAIADPSNAVLTQWFEKYKDNYR 225
+ G+ + + + + + Y+ + + + S + + + + +K++++
Sbjct: 173 LIRAGVGTTLKEGELDYKLANDKLDISYVRVPYTSILDSTVAVSKSEIEAYVKAHKEDFK 232
Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
+ I ++ F+ K +++ A N+ ++
Sbjct: 233 QDNSRDIQFVYFEEKVSLKDENEVKEKINALLNDNQVF------------------SKEK 274
Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
+G + SD + K + G
Sbjct: 275 DTTETVRGFRNTTDNIAFLDINSDTKFDTIYKPKSSLPANVADTLVKLSIGTIYGPYRDG 334
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
+ ++ ++ + V K + + AS +E + EE + + +
Sbjct: 335 NTFKVSKLTGKRAGGNV------KASHILIAFSGASNAGEEVTRTKEEAESKAKEVLAEA 388
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT-VALPDGSYM 464
++ V DL + G K ++ + D +
Sbjct: 389 KKSGAVFADLAKENSDGPSGPRGGDLGFFQKGAMVKPFNDFVFNNGAGSIGLVETDFGFH 448
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
V+++E +V V++ + +T + + A + + + F +I K
Sbjct: 449 IVKVEEKQDLY-----QVANLVREIEPSEETIDLLFQDATKFEMSTVENKSKFEEIAKKD 503
Query: 525 GASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+ N++N MD G + F+ E+ + Y V ++T
Sbjct: 504 NYVVRPVNKLNPMDENLPGLGAQRPIVQWAFNADSEIGDVKRFDLNDGYAVVRLTAK 560
Score = 91.1 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 62/521 (11%), Positives = 138/521 (26%), Gaps = 33/521 (6%)
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ + + +DN +E E + +L+ V
Sbjct: 213 VAVSKSEIEAYVKAHKEDFKQDNSRDIQFVYFEEKVSLKDENEVKEKINALLNDNQVFSK 272
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+ F + + D + + A
Sbjct: 273 EKDTTETVRGFRNTTDNIAFLDINSDTKFDTIYKPKSSLPANVADTLVKLSIGTIYGPYR 332
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ ++ S+ + N + + E K +
Sbjct: 333 DGNTFKVSKLTGKRAGGNVKASHILIAFSGASNAGEEVTRTKEEAE------SKAKEVLA 386
Query: 288 QSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
++ K G F LA+E S LG F K + F ++
Sbjct: 387 EAKKSGAVFADLAKENSDGPSGPRGGDLGFFQKGAMVKPFN---DFVFNNGAGSIGLVET 443
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FG+ I V + + V+ + + + + ++ K + + +EI
Sbjct: 444 DFGFHIVKVEEKQDLYQVANLVREIEPSEETID----LLFQDATKFEMSTVENKSKFEEI 499
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
++++ V + ++ + + + + ++ F D + L DG Y
Sbjct: 500 AKKDNYVVRPVNKLN-----PMDENLPGLGAQRPIVQWAFNADSEIGDVKRFDLNDG-YA 553
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
V++ E+ V + K A + K +GK+F K+
Sbjct: 554 VVRLTAKYAKGLMTSEDASAVVLPVLRKQKKAAMIMDK---------NKGKSFDAFAKDN 604
Query: 525 GASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S T + I+ G + + Y+V +
Sbjct: 605 NVSAATASAISVKSPTIAGAGREPAVAGTAYVLAEGKTSGLIEGESGVYMVTVTKKTAAT 664
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ F + L + SV LK+ + + ++
Sbjct: 665 KLDNYSTFANTLKASNATRVNSSVYQALKAASEIEDNRSMF 705
>gi|251772461|gb|EES53028.1| protein of unknown function [Leptospirillum ferrodiazotrophum]
Length = 235
Score = 92.6 bits (227), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 9/181 (4%)
Query: 1 MLEIIRKAS--RTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54
MLE IR+ + R V + + + + W + SG V V +
Sbjct: 1 MLEWIRREAVERPKVIGVLILLTGGIFVLSMGWW--GFSQSGSSGGDVVAKVDGVPIKAK 58
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ + + + + ++ + + +L N++ + +G+
Sbjct: 59 DYSRDYLIMKDNYKRLLRGDLGAKILKDLNFPGLVLRNMIYRQLWIDEGKSLGIAVSDKT 118
Query: 115 VWGEIARSPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
V EIA+ P F + FS D +V+ L + + + +
Sbjct: 119 VVDEIAKIPFFQVGNPPVFSKDAYVTFLKETHQSAQSFERSVRLDVLVQRAQLFVRASQT 178
Query: 174 P 174
Sbjct: 179 I 179
>gi|319901400|ref|YP_004161128.1| peptidyl-prolyl cis-trans isomerase [Bacteroides helcogenes P
36-108]
gi|319416431|gb|ADV43542.1| peptidyl-prolyl cis-trans isomerase [Bacteroides helcogenes P
36-108]
Length = 712
Score = 92.2 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 66/610 (10%), Positives = 167/610 (27%), Gaps = 51/610 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + V + +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSQDVGEVNGETVSAQDYQTMVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ ++ G S+ ++ + ++ V +++ + +GL + I
Sbjct: 61 EYTEVVKFSSGVSALSDE-QTNQIKDEVWRRYVENKLVEKEAKKLGLTVSKAELQAIIDA 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L K + +
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNKAQMPSQYAEYYDSMYKFWSFIEKS 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V A + S+ +LT
Sbjct: 180 LVQARLQEKYQALITKSLFSNPVEAQDAFDARVNQSDLLLTA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKK 292
+ + I ++ EL+A Y+K KE++ + + ++ K+
Sbjct: 222 --IPYSSIVDSTITVTEGELKAAYDKKKEQFRQYVEARNIKFIDVQVTASPEDKAAIQKE 279
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+++ + + S D+ V G +
Sbjct: 280 MEEYTTQLAGTPSDYTTFVRSTGSTVPYVDLYYTSKSLPADIAARLDSVSVGGVYGPYYN 339
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL-GTSMDEISRREKIV 411
V++ + V + + R + + + K L + + + K
Sbjct: 340 VTDNTINSFKKLASVTMADSIEFRQIQVTAEDAGKTKSLADSIYNAIKGGANFADVAKKY 399
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + +G ++ + + + + + + + +Q+ +
Sbjct: 400 GQTGEPTWISSANYEGAQID--GDNLKYITAITTLGQNELMNLPLGQAN---VILQVTDK 454
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGASL 528
+D V + V+ ++E SKA ++ + ++ G L
Sbjct: 455 KANKD------KYKVAVIKRPVEFSKETYSKAYNDFSQFIAANNTLEKMVANAEDAGYRL 508
Query: 529 LTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQ 585
L + ++ D + F V + +V V + +
Sbjct: 509 LDKTDLYSSEHGIGGVKGTKDALKWAFEAKAGEVSGLYECGESDRMLVVGVASIVPEGYR 568
Query: 586 EKDKFISYLT 595
L
Sbjct: 569 PLALVKDQLK 578
Score = 53.7 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 34/338 (10%), Positives = 87/338 (25%), Gaps = 16/338 (4%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE----YIPDVSLADSIFSLAKKGDFTPVI 342
+ ++K G F +A++ G++ + S + E ++ +I +L + +
Sbjct: 383 YNAIKGGANFADVAKKYGQTGEPTWISSANYEGAQIDGDNLKYITAITTLGQNELMNLPL 442
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
+ + + ++ +KA + + + +
Sbjct: 443 GQANVILQVTDKKANKDKYKVAVIKRPVEFSKETYSKAYNDFSQFIAANNTLEKMVANAE 502
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ R +D + + + L F
Sbjct: 503 DAGYRL---------LDKTDLYSSEHGIGGVKGTKDALKWAFEAKAGEVSGLYECGESDR 553
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ V + +P R L V +K + K AE++ + + KN
Sbjct: 554 MLVVGVASIVPEGYRPLALVKDQLKFEIIRDKKAEKIMADMKAANATSFDQYKNM---AN 610
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
+ S+ +S + PI+ V + +
Sbjct: 611 AVSDSVKHVTFAASAYVPALRTSEPLVSAYAAMADLNKLSAPIKGNGGVFVLQPYAKEKL 670
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ M+ + ++ L + V
Sbjct: 671 NETFNRETEETTLANMHARMASQFMSDLYLKADVKDKR 708
>gi|212694486|ref|ZP_03302614.1| hypothetical protein BACDOR_04014 [Bacteroides dorei DSM 17855]
gi|237711177|ref|ZP_04541658.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
gi|237727542|ref|ZP_04558023.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D4]
gi|265750767|ref|ZP_06086830.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
gi|212662987|gb|EEB23561.1| hypothetical protein BACDOR_04014 [Bacteroides dorei DSM 17855]
gi|229434398|gb|EEO44475.1| peptidyl-prolyl cis-trans isomerase [Bacteroides dorei 5_1_36/D4]
gi|229455021|gb|EEO60742.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
gi|263237663|gb|EEZ23113.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
Length = 710
Score = 92.2 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 66/633 (10%), Positives = 175/633 (27%), Gaps = 52/633 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + + + + F+ L G V V + + +
Sbjct: 4 LQTIR--SKGPLLVVVIGLALFAFIAGDAWKVLQPHQGKQDVGEVNGKTLTAQEYQKMVD 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ +I G ++ + + ++ + V+ + +GL V I
Sbjct: 62 EYTEVIKLTQGVSALNDD-QLTQVKDQVWQSYVNNQLIAAEAAKLGLTVSKAEVQAIIEE 120
Query: 121 -------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L + + +
Sbjct: 121 GTNPLLMQTPFRNPQTGAFDKDMLKKFLVDYAHLDASKMPAQYVEYYQKMGAFWNFIEKT 180
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + + V + + S+ +L
Sbjct: 181 LIQSTLAEKYQNLIAKSLISNPVAAEDAFISRTEQSDVLLAA------------------ 222
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I +SN E++ Y K K + P + + + +
Sbjct: 223 --IPYSSISDSTITVSNSEIKDLYNKKKGSFEQP--VETRNIKYIDVLVTPSDEDRKEVL 278
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+ + A + G + +D++ S + S ++ + + V
Sbjct: 279 NEVTEYATQLGTA-ADMNTFIRSTGSVVPFSEIAINKTVYPNDVVARLDSVTINEVYGPY 337
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
N +F+ + K A + + ED + + + ++
Sbjct: 338 YNQADDSYNAFKIIAKQTAPDSIQYRQIQVYAEDAAKTATLADSIFNALKGGADFTDIAK 397
Query: 414 DLPLVDFAGKDV--KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
A + A + + + + + + + + +Q+ +
Sbjct: 398 KYGQTGEATWLTARNYEGAALDADNAKYINTLINSNVKELTNLQIGQAN---VILQVLDK 454
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGASL 528
+D V + V+ ++E +KA ++ + I + G L
Sbjct: 455 KAMKD------KYKVAVIKRPVEFSKETYNKAYNDFSQFVAQNTTMDKIIANAEESGYRL 508
Query: 529 LTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQ 585
L ++ + + +F+ V + +V + +
Sbjct: 509 LERADFRSAEHRVGGVKGTREALKWIFAAKEGEVSPLYECGENDHLMVVALEKINPAGYR 568
Query: 586 EKDKFISYL-TQMMNKDLLDSVIAYLKSQYSVT 617
+ L +++ + +IA +KS S+
Sbjct: 569 NINLVADMLKAEIIKDKKAEKLIAEMKSASSID 601
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/336 (11%), Positives = 88/336 (26%), Gaps = 16/336 (4%)
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+LK G F +A++ G++ L + + E + + + + + G
Sbjct: 384 NALKGGADFTDIAKKYGQTGEATWLTARNYEGAALDADNAKYINTLINSNVKELTNLQIG 443
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ + +V + K D+ + + +
Sbjct: 444 QANVILQVLDKKAMKDKYKVAVIKRPVEFSKETYNKAYNDFSQFVAQNTTMDKIIANAEE 503
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
++ A V + + L +F + + M V
Sbjct: 504 SGYRLLE-----RADFRSAEHRVGGVKGTREALKWIFAAKEGEVSPLYECGENDHLMVVA 558
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+++ PA R + V +K + K AE++ ++ K + + A
Sbjct: 559 LEKINPAGYRNINLVADMLKAEIIKDKKAEKLIAE--------MKSASSIDQVKSMANAV 610
Query: 528 LLTTNQINRMDNENKFF---GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
+ I + S PI+ + +V N +
Sbjct: 611 SDSVKHITFSAPAYVSVTRASEPALGAYASKAEINKLTGPIKGNAGVYMIQVYNKEKSAE 670
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ K M S I L + V
Sbjct: 671 EFDAKNEENNLSNMAGRYASSFINDLYKKADVKDDR 706
>gi|167753138|ref|ZP_02425265.1| hypothetical protein ALIPUT_01409 [Alistipes putredinis DSM 17216]
gi|167659452|gb|EDS03582.1| hypothetical protein ALIPUT_01409 [Alistipes putredinis DSM 17216]
Length = 678
Score = 91.8 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 69/606 (11%), Positives = 159/606 (26%), Gaps = 62/606 (10%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L +R V I + + F++ +D S V + K+ +S +I +
Sbjct: 4 LNTLRTRF-GVVLSIIIAFALLAFILSLKTDMGLSG-NDPKVGVIDGSKIRYSEYIEVYN 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ S + L + L++ E +G+ G I
Sbjct: 62 NLKDQSNIS-----ESNEEQMDQLAEMAWQTLIANHVYLPGFEKMGISVTDAEREGLI-- 114
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
S + + +A + RT + + +
Sbjct: 115 -----------SGEYYSGTMAAAFTDP------------RTGQYSVEGVSDFIAQATGNP 151
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
++ + + + + + + + + +
Sbjct: 152 QMQYMWGALVGQAMREREINKYNGLVKGGVYVNRLEAEEGVDAQNKTFSGSWVGKRYHDM 211
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ--- 298
+ +S+ E++A Y +K +Y RT+ +VF A++ K ++
Sbjct: 212 PDSLFSVSDSEIKAYYNSHKARYEQKPSRTLSYVVFEVAPSAEDMATLEKTVREVGDEFA 271
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+++ + G + Y L D G + + + + V
Sbjct: 272 ASDDPKAFAKNNRFGKITDNYRSVAQLLDDEAEALANGKQYGPVLKNDTWTMTRVVETLN 331
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ + +R + ++ L L G + +R + D
Sbjct: 332 AP----------DSVGVRHIVLTYDQRDLADSLMTALRQGADFAQAARTHSLYMQDAGNG 381
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
AG + + V + D +QI +
Sbjct: 382 GDAGVMPFSAFPDELSGLLSTAKQ--------GDILRVEVGD----VIQILQVYRLDKPS 429
Query: 479 LEEVLTDVKKDWKTVKTAEE-VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
L + + V S+A+ +E F + + + +
Sbjct: 430 KHMRLATITYPVEASSATRRNVHSQASLFSVEGKGSVDAFNEAANKGNLTPREAK-LTQG 488
Query: 538 DNENKFF--GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
D + + + + V + G YVV VT +K + +
Sbjct: 489 DRLLQGLADSRELVRWAYDAKVGAISEI-FPVGDDYVVAVVTEIDNEDYTPIEKVANNIR 547
Query: 596 QMMNKD 601
Q + D
Sbjct: 548 QTLITD 553
Score = 68.0 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 61/539 (11%), Positives = 137/539 (25%), Gaps = 27/539 (5%)
Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
+ + LV A ++ I G + ++ FS R
Sbjct: 154 QYMWGALVGQAMREREINKYNGLVKGGVYVNRLEAEEGVDAQNKTFSGSWVG---KRYHD 210
Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
+ +PS L + + R V
Sbjct: 211 MPDSLFSVSDSEIKAYYNSHKARYEQKPSRTLSYVVFEVAPSAEDMATLEKTVREVGDEF 270
Query: 207 DPSNAVLTQWFEKY--KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
S+ K ++ + K+ + E
Sbjct: 271 AASDDPKAFAKNNRFGKITDNYRSVAQLLDDEAEALANGKQYGPVLKNDTWTMTRVVETL 330
Query: 265 FSPEIRTVEQLVFPNQKEADEA--FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
+P+ V +V + +L++G F Q A + D G +P
Sbjct: 331 NAPDSVGVRHIVLTYDQRDLADSLMTALRQGADFAQAARTHSLYMQDAGNGG-DAGVMPF 389
Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE 382
+ D + L ++ G VI + + K +
Sbjct: 390 SAFPDELSGLLSTAKQGDILRVEVGDVIQILQ------VYRLDKPSKHMRLATITYPVEA 443
Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ + L K +G + + L R
Sbjct: 444 SSATRRNVHSQASLFSVEGKGSVDAFNEAANKGNLTPREAKLTQGDRLLQGLADSRELVR 503
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + D Y+ + E +E+V ++++ T K E++ S+
Sbjct: 504 WAYDAKVGAISEIFPVGDD-YVVAVVTEIDNEDYTPIEKVANNIRQTLITDKKFEKIVSE 562
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVFSGPVEMV 560
G ++ +NLG ++ + + G I + +
Sbjct: 563 MK---------GSTIEEVAQNLGTEVVPFEDVRYGSFFIRNMGVEPRVIGAITATEQTNT 613
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD-SVIAYLKSQYSVTV 618
P++ + VF VT+ + + + + ++ ++ + +L+ +V
Sbjct: 614 LSEPVKGNVGAYVFVVTDIQEAETPQSIEAEKVRAEASSQGMIQRRLFDFLEQMSNVED 672
>gi|206890921|ref|YP_002247897.1| hypothetical protein THEYE_A0043 [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742859|gb|ACI21916.1| conserved hypothetical protein [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 196
Score = 91.8 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/194 (14%), Positives = 69/194 (35%), Gaps = 8/194 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +RK ++ + ++ + F+ WG+ V V QK+ F ++
Sbjct: 1 MIKTLRKNAKYF--YFLFFLVIITFVFWGVGTV--DKPKVEYVADVDGQKISAERFWRNY 56
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + GL +K+L++L++ L + +EA V I
Sbjct: 57 EEIRRFYREVFKDKAAEME---QGLKEKVLEDLINEEILLWLAKKYEIEATDKEVQDAIV 113
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P F ++ F D++ L +N +Y + ++ + + S +
Sbjct: 114 NDPRF-MRNGIFQRDIYFQILKLNRLNPAQYEASLKREITIGKTIQVIAFSKGASEISDS 172
Query: 181 QAKRFYFENRSVDY 194
+ + +
Sbjct: 173 VYIKAFLNSIRSQI 186
>gi|150005095|ref|YP_001299839.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
8482]
gi|294778904|ref|ZP_06744320.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|149933519|gb|ABR40217.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
8482]
gi|294447213|gb|EFG15797.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
Length = 710
Score = 91.8 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 60/617 (9%), Positives = 167/617 (27%), Gaps = 53/617 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + + + + F+ L G V V + + +
Sbjct: 4 LQTIR--SKGPLLVVVIGLALFAFIAGDAWKVLQPHQGKQDVGEVNGKTLTAQEYQKMVD 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ +I G ++ + + ++ + V+ + +GL V I
Sbjct: 62 EYTEVIKLTQGVSALNDD-QLTQVKDQVWQSYVNNQLIAAEAAKLGLTVSKAEVQAIIEE 120
Query: 121 -------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L + + +
Sbjct: 121 GTNPLLMQTPFRNPQTGAFDKDMLKKFLVDYAHLDASKMPAQYVEYYQKMGAFWNFIEKT 180
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + + V + + S+ +L
Sbjct: 181 LIQSTLAEKYQNLIAKSLISNPVAAEDAFTSRTEQSDVLLAA------------------ 222
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I +SN E++ Y K K + P + + + +
Sbjct: 223 --IPYSSISDSTITVSNSEIKDLYNKKKSSFEQP--VETRNIKYIDVLVTPSEEDRKEVL 278
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHGSFGYVI 350
+ + A + G + + + +P + + + I+ +G
Sbjct: 279 NEVTEYANQLGTAADMNTFIRSTGSVVPFSEIAINKTVYPNDVVARLDSVTINEVYGPYY 338
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ +F + ++ D +I +E + + + + K
Sbjct: 339 NQADDSYNAFKIIAKQTAPDSIQYRQIQVYAEDAAKTATLADSIFNALKDGADFADIAKK 398
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
++ +G + + + + + + + + + +Q+ +
Sbjct: 399 YGQTGEATWLTARNYEGAALD--ADNAKYINTLINSNVKELSNLQIGQAN---VILQVLD 453
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGAS 527
+D V + V+ ++E +KA ++ + I + G
Sbjct: 454 KKAMKD------KYKVAVIKRPVEFSKETYNKAYNDFSQFVAQNTTMDKIVANAEESGYR 507
Query: 528 LLTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPV 584
LL ++ + + +F+ V + +V +
Sbjct: 508 LLERADFRSAEHRVGGVKGTREALKWIFAAKEGEVSPLYECGENDHLMVVALEKINPAGY 567
Query: 585 QEKDKFISYLTQMMNKD 601
+ + L + KD
Sbjct: 568 RNINLVADMLKAEIIKD 584
Score = 60.3 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 42/335 (12%), Positives = 91/335 (27%), Gaps = 14/335 (4%)
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+LK G F +A++ G++ L + + E + + + + + G
Sbjct: 384 NALKDGADFADIAKKYGQTGEATWLTARNYEGAALDADNAKYINTLINSNVKELSNLQIG 443
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ + +V + K D+ + + +
Sbjct: 444 QANVILQVLDKKAMKDKYKVAVIKRPVEFSKETYNKAYNDFSQFVAQNTTMDKIVANAEE 503
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
++ A V + + L +F + + M V
Sbjct: 504 SGYRLLE-----RADFRSAEHRVGGVKGTREALKWIFAAKEGEVSPLYECGENDHLMVVA 558
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS--KANQLVLEYSKEGKNFRDIGKNLG 525
+++ PA R + V +K + K AE++ + K + + D K++
Sbjct: 559 LEKINPAGYRNINLVADMLKAEIIKDKKAEKLIAEMKGANSIDQVKNMANAVSDSVKHIT 618
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
S + R + S PI+ + +V N + +
Sbjct: 619 FSAPAYVSVTRAS-------EPALGAYASKAEVNKLTGPIKGNAGVYMIQVYNKEKSAEE 671
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
K M S I L + V
Sbjct: 672 FDAKNEENNLSNMAGRYASSFINDLYKKAEVKDDR 706
>gi|326798824|ref|YP_004316643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
21]
gi|326549588|gb|ADZ77973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
21]
Length = 701
Score = 91.8 bits (225), Expect = 3e-16, Method: Composition-based stats.
Identities = 76/603 (12%), Positives = 170/603 (28%), Gaps = 43/603 (7%)
Query: 24 PFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
FL+ + F S + V ++ + + ++ F N +Q + + Q++G ++ +
Sbjct: 25 AFLLGDVIRFGTPFWASHQNEVGNIDGESISYTDFNNQVEQSINNMRQQMGGNMSPQM-- 82
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
+ + + + LD+ +E IGL + + F +
Sbjct: 83 TSYAVEDAWNQNLRRLLLDKELERIGLGVGKNELQDMVTGKNPSPMIAQNFGNPQTGEID 142
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
+ + + G F+ MR + L + +
Sbjct: 143 RNQLNQFLANVAKEPANSELSRQWGTFLEAMRDNRLQQKYNNLIQNSVYVTSLEATEDYN 202
Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
+ VL + + + + +Y + ++E + +
Sbjct: 203 QRNKIANFSYVLLDYASIPDKDIKLTDADYQNYYNEHKAAFKNQMETRSFD--------Y 254
Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
+ + L + E F EQ + +S I G+ S
Sbjct: 255 VVFNAQPTAQDTALAKETITKLTEELAKSTNDSLFAVSNSEQKRPVSYIKKGTLSPA--- 311
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
DS+ A KG ++ + Y A + +++ S A + + A+
Sbjct: 312 ----LDSLVFSAAKGSTVGPVYSNGVYESAKILDVRNSPDSV-------TARHILLNPAT 360
Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
E + + + + D G+ + IP E +F
Sbjct: 361 EGGVDKAMAKADSIKNLILKGGNFAALAVEFGTDGTKDNGGELGTFARGSMIPAFENAVF 420
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
D V +++ ++ + +T S
Sbjct: 421 DAKPGDV------FVLNTQYGVHIIKVDAQKGMSKVVKAAIIDKSVS--SSNETLRAAYS 472
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQVFSGPVEM 559
KA+ + + +NF + K G ++ + I M + I F
Sbjct: 473 KASDFFGKANS--QNFAEEAKKAGLTVEHADNITPMQGYLPNLETPREVIKWAFKAEKGD 530
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-----LTQMMNKDLLDSVIAYLKSQY 614
+ E YV+ K+TN + + L ++ L + L+
Sbjct: 531 LTDKVYELDNQYVIAKLTNIRPKGQLSLEDVKKEIEPAVLNKVKATKLAQKLNDALQGAK 590
Query: 615 SVT 617
S+
Sbjct: 591 SID 593
Score = 89.1 bits (218), Expect = 2e-15, Method: Composition-based stats.
Identities = 60/584 (10%), Positives = 151/584 (25%), Gaps = 39/584 (6%)
Query: 50 KVPFSSFINSWKQEL-----GMISQKIGFVVNSERARSVGLDKKILDNLVSGATL---DQ 101
++ + +S++ G + A ++ +NL+ + +
Sbjct: 140 EIDRNQLNQFLANVAKEPANSELSRQWGTFL---EAMRDNRLQQKYNNLIQNSVYVTSLE 196
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
ED + KD K + + + K ++ +
Sbjct: 197 ATEDYNQRNKIANFSYVLLDYASIPDKDIKLTDADYQNYYNEHKAAFKNQMETRSFDYVV 256
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ + + + V N+ ++ L+ +
Sbjct: 257 FNAQPTAQDTALAKETITKLTEELAKSTNDSLFAVSNSEQKRPVSYIKKGTLSPALDSLV 316
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ Y + ++ + V
Sbjct: 317 FSAAKGSTVGPVYSNGVYESAKILDVRNSPDSVTARHILLNPATEGG-------VDKAMA 369
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+AD + KG F LA E G + LG+F++ + + +++F
Sbjct: 370 KADSIKNLILKGGNFAALAVEFGTDGTKDNGGELGTFARGSMI-PAFENAVFDAKPGDV- 427
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
F + +I A + +S +
Sbjct: 428 -------FVLNTQYGVHIIKVDAQKGMSKVVKAAIIDKSVSSSNETLRAAYSKASDFFGK 480
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ + K + + D + + +++ F + D L
Sbjct: 481 ANSQNFAEEAKKAGLTVEHAD--NITPMQGYLPNLETPREVIKWAFKAEKGDLTDKVYEL 538
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
D Y+ ++ P LE+V +++ A +++ K N + + K+
Sbjct: 539 -DNQYVIAKLTNIRPKGQLSLEDVKKEIEPAVLNKVKATKLAQKLNDAL----QGAKSID 593
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKV 576
I + +G + I + + + VF + + N YVV
Sbjct: 594 QIAQKVGKTPKAEQNIVFANPILPGVAQENKVVGTVFGLQPKQLSKPIEGNQGVYVVQVT 653
Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ + D+ + Q + + + L + + +
Sbjct: 654 DFVNPPALDKVDQQKQQVRQQLRQRASNQSFQALLDKADIKDNR 697
>gi|254883229|ref|ZP_05255939.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA]
gi|319642604|ref|ZP_07997250.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
gi|254836022|gb|EET16331.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA]
gi|317385692|gb|EFV66625.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
Length = 710
Score = 91.5 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 60/617 (9%), Positives = 167/617 (27%), Gaps = 53/617 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + + + + F+ L G V V + + +
Sbjct: 4 LQTIR--SKGPLLVVVIGLALFAFIAGDAWKVLQPHQGKQDVGEVNGKTLTAQEYQKMVD 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ +I G ++ + + ++ + V+ + +GL V I
Sbjct: 62 EYTEVIKLTQGVSALNDD-QLTQVKDQVWQSYVNNQLIAAEAAKLGLTVSKAEVQAIIEE 120
Query: 121 -------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L + + +
Sbjct: 121 GTNPLLMQTPFRNPQTGAFDKDMLKKFLVDYAHLDASKMPAQYVEYYQKMGAFWNFIEKT 180
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + + V + + S+ +L
Sbjct: 181 LIQSTLAEKYQNLIAKSLISNPVAAEDAFTSRTEQSDVLLAA------------------ 222
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I +SN E++ Y K K + P + + + +
Sbjct: 223 --IPYSSISDSTITVSNSEIKDLYNKKKSSFEQP--VETRNIKYIDVLVTPSEEDRKEVL 278
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL---ADSIFSLAKKGDFTPVIHGSFGYVI 350
+ + A + G + + + +P + + + I+ +G
Sbjct: 279 NEVTEYANQLGTAADMNTFIRSTGSVVPFSEIAINKTVYPNDVVARLDSVTINEVYGPYY 338
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ +F + ++ D +I +E + + + + K
Sbjct: 339 NQADDSYNAFKIIAKQTAPDSIQYRQIQVYAEDAAKTATLADSIFNALKDGADFADIAKK 398
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
++ +G + + + + + + + + + +Q+ +
Sbjct: 399 YGQTGEATWLTARNYEGAALD--ADNAKYINTLINSNVKELSNLQIGQAN---VILQVLD 453
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGAS 527
+D V + V+ ++E +KA ++ + I + G
Sbjct: 454 KKAMKD------KYKVAVIKRPVEFSKETYNKAYNDFSQFVAQNTTMDKIVANAEESGYR 507
Query: 528 LLTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPV 584
LL ++ + + +F+ V + +V +
Sbjct: 508 LLERADFRSAEHRVGGVKGTREALKWIFAAKEGEVSPLYECGENDHLMVVALEKINPAGY 567
Query: 585 QEKDKFISYLTQMMNKD 601
+ + L + KD
Sbjct: 568 RNINLVADMLKAEIIKD 584
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/335 (12%), Positives = 92/335 (27%), Gaps = 14/335 (4%)
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+LK G F +A++ G++ L + + E + + + + + G
Sbjct: 384 NALKDGADFADIAKKYGQTGEATWLTARNYEGAALDADNAKYINTLINSNVKELSNLQIG 443
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ + +V + K D+ + + +
Sbjct: 444 QANVILQVLDKKAMKDKYKVAVIKRPVEFSKETYNKAYNDFSQFVAQNTTMDKIVANAEE 503
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
++ A V + + L +F + + M V
Sbjct: 504 SGYRLLE-----RADFRSAEHRVGGVKGTREALKWIFAAKEGEVSPLYECGENDHLMVVA 558
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS--KANQLVLEYSKEGKNFRDIGKNLG 525
+++ PA R + V +K + K AE++ + K + + D K++
Sbjct: 559 LEKINPAGYRNINLVADMLKAEIIKDKKAEKLIAEMKGANSIDQVKNMANAVSDSVKHIT 618
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
S + R + V + N Y++ K
Sbjct: 619 FSAPAYVSVTRASE------PALGAYAIKAEVNKLTGPIKGNAGVYMIQVYNKEKSAEEF 672
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ + L+ M + S I L + V
Sbjct: 673 DAKNEENNLSNMAGRYA-SSFINDLYKKAEVKDDR 706
>gi|189467728|ref|ZP_03016513.1| hypothetical protein BACINT_04120 [Bacteroides intestinalis DSM
17393]
gi|189435992|gb|EDV04977.1| hypothetical protein BACINT_04120 [Bacteroides intestinalis DSM
17393]
Length = 712
Score = 91.5 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 75/616 (12%), Positives = 180/616 (29%), Gaps = 51/616 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + S V V + + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVLQPHQSHDVGEVNGEALSAQDYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-- 119
+ ++ G ++ + + ++ N V+ ++ + +G+ + I
Sbjct: 61 EYTEVVKFSRGTSALTDE-ENNQIKDEVWRNYVNNKLIENEAKKLGISVSKAEIQAIIDA 119
Query: 120 ------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L + ++ +
Sbjct: 120 GVHPMLQQTPFRNPQTGAFDKDMLKKFLVDYSKMNTAQMPAQYAEYYQSMYKFWSFLEKQ 179
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
L + + V A D S+ +L
Sbjct: 180 LIQNRLAEKYQALVSKSLFSNPVEAQVAFDARVDQSDLLLAA------------------ 221
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ ++ I I++ +L+A Y+K KE++ + + + E ++++
Sbjct: 222 --IPYSSIEDSTITITDADLKAAYDKKKEQFRQYVETRNIKFIDVQVTASPEDRNAIQEE 279
Query: 294 KK--FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
QLA G + + YI + ++ + + + G +G
Sbjct: 280 VVEYTEQLAGTPGDYSTLVRAAGSEVPYIDLYYTSKALPTDVVARLDSVSVGGVYGPYYN 339
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
N SF D +I +E + + + + K
Sbjct: 340 ATDNTINSFKKLATASMPDSIQYRQIQVVAEDATKTKALADSIYTAIKGGADFAEIAKKY 399
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + +G ++ K GK++ + A + +Q+ +
Sbjct: 400 GQTGESTWISSANYEGAQLDGDNLKYVNTITTLGKNEMANLSLAQAN-----IILQVMDK 454
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGASL 528
+D V + V+ ++E SKA ++ + ++ G L
Sbjct: 455 KAVKD------KYKVAVIKRPVEFSKETYSKAYNDFSQFIAANPTLEKMVANAEDAGYKL 508
Query: 529 LTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQ 585
L N + ++ + + FS V + +V V+ +
Sbjct: 509 LDRNDLYSSEHGIGSIRGTKEALRWAFSAKPGEVSGLYECGESDRMLVVGVSAIIPEGYR 568
Query: 586 EKDKFISYLTQMMNKD 601
L + +D
Sbjct: 569 PLALVKDQLRLELIRD 584
>gi|189184244|ref|YP_001938029.1| peptidyl-prolyl cis-trans isomerse D [Orientia tsutsugamushi str.
Ikeda]
gi|189181015|dbj|BAG40795.1| peptidyl-prolyl cis-trans isomerse D [Orientia tsutsugamushi str.
Ikeda]
Length = 517
Score = 91.5 bits (224), Expect = 4e-16, Method: Composition-based stats.
Identities = 71/489 (14%), Positives = 167/489 (34%), Gaps = 14/489 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGR-QKVPFSSFINS 59
ML +R AS + KI +++L + + W + S + SS +V+ + + + S F+ +
Sbjct: 1 MLNKLRTASHSIAFKILILILILASVFWSIGTMFHSSNNSSDIVTFTKAKNITKSEFMQA 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
K + I Q + + + +L NL+S L+Q + L V+ I
Sbjct: 61 LKLAMHQIPQNSDQNL----LTQNNIRELVLSNLISTHVLEQLAHEYNLTLSTAAVFKFI 116
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
S F + F ++F + L I+E +Y D K ++ F+ ++L
Sbjct: 117 QNSKAF-NNNQNFDINIFRNILKNLHISEPQYFDQAAKQQLSEILLRQFINNNYVPSILT 175
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
E R++ + ++ ++ + PS+ L +++ + + PE + ISYI+
Sbjct: 176 KNIINLSAETRNIQLVSIDLQNEQLQSTLDSPSSEQLQEFYNNNQSKFEKPEQRHISYIV 235
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
D + + K+ + N L+ Y + +++ T + + +
Sbjct: 236 LDNNYFKNKVIVDNKSLEEFYRTHSDQFSEKNSFTKNIAEVREKYVNHQVDKLFNDTITL 295
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
++ G + S+I+ K + + + + T I + ++ ++
Sbjct: 296 LEDEVASGSNSSEIAKMLNVKLLTLNNVTKQKLANNKILSNVTDAIFALEEHETSYPLDV 355
Query: 357 KPSFTVSFQEVK-----KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ K + + + E K + L +
Sbjct: 356 SSKMLIIVSIQKIIPTAVEKFDNVLNQVQEEWKKNTIRERNIELLNKFQQTTNADNFIAD 415
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ L V + ++ + ++ + ++ + I
Sbjct: 416 AKKYKLTVKPNVIVTRLNNNTVELPKEFVEQLLTLKKREVSNVYISTSNQHAYVALISAI 475
Query: 472 IPARDRKLE 480
RD +
Sbjct: 476 TTDRDLTTK 484
>gi|163753204|ref|ZP_02160328.1| peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1]
gi|161326936|gb|EDP98261.1| peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1]
Length = 701
Score = 91.1 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 73/617 (11%), Positives = 175/617 (28%), Gaps = 45/617 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINSW 60
L IR+ RT V + + + F+I + + T + +V + +P F N
Sbjct: 4 LAKIRQ--RTLVLILIIGLALFAFVISDVFNNNGGGDKRPTEMGTVNGENIPLQQFQNQV 61
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-- 118
+ ++ R ++ + + D V A + Q ++++G+ + +W
Sbjct: 62 E---------YAKNLSRGRQTTMQIVNSLWDEEVKNALITQQLDELGITIEKDEIWNLLI 112
Query: 119 ----IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
I SP F + F + ++ D +
Sbjct: 113 TSPNITSSPQFQDESGTFVEGKLREYV-NNLEAKRNLDDQSKAEYNNWV----------- 160
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
+ R + N + + +
Sbjct: 161 --------ATEQYTIREAKKALYYNLVKAGSIATVKEGEMAYRMENDKVTFKYVQIPYTS 212
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
I + E K + E + KE + E +++EA + + KKG
Sbjct: 213 IADSLVEVRKSDVQNYIENHKSEFEVKESRDIQYVFFPETPSKSDEEEAKQMVEDYKKGL 272
Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
+ A ++ + + + S + GD Y I+ +
Sbjct: 273 AAAEDANAYANEYTETNESTAFTYSSQLPADISSEIMAMEVGDVYGPYKVGNQYKISRLV 332
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + + A +K + ++ ++ + ++ +
Sbjct: 333 ETSKLPDSV--KSRHILIRFAGSAGAQPDLKRTKEEAKKTADSILTIVKRNKSKFADIAK 390
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
D + F+ F ++ V P G ++ +
Sbjct: 391 EISDDTSKDKGGDLGWFTGATALTPTFKEFVFENETGDMGVVESPFGFHVIEIEDQKNEQ 450
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ KL + V+ T +T ++ + +++ + K F ++ K + N+I
Sbjct: 451 KVVKLATINKQVE---VTEQTLNDLFTTSSKFESDAGKSDDAFVNVAKERNYDVNPVNRI 507
Query: 535 NRMDNENKFFGY--DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
+D + I F E+ G ++V +VT + ++ +
Sbjct: 508 KELDASLAGMPQQREVIRWTFEEDTEVGDIRRFSVGSGFIVVQVTAKHAAGLASVEEASA 567
Query: 593 YLTQMMNKDLLDSVIAY 609
+ + +I
Sbjct: 568 RVLGTLRNKKKAEMIKA 584
Score = 86.5 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/518 (9%), Positives = 134/518 (25%), Gaps = 25/518 (4%)
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
++ + + + ++ +H I + + +K
Sbjct: 206 VQIPYTSIADSLVEVRKSDVQNYIENHKSEFEVKESRDIQYVFFPETPSKSDEEEA--KQ 263
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
V + + A + E + AD S+ ++ Y+
Sbjct: 264 MVEDYKKGLAAAEDANAYANEYTETNESTAFTYSSQLPADISSEIMAMEVGDVYGPYKVG 323
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+IS ++ + RT E+
Sbjct: 324 NQYKISRLVETSKLPDSVKSRHIL----IRFAGSAGAQPDLKRTKEEAKKTADSILTIVK 379
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
++ K + + LG F+ + + +F V+ FG
Sbjct: 380 RNKSKFADIAKEISDDTSKDKGGDLGWFTGATALTPTFKEFVFENETGDM--GVVESPFG 437
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ + + + K V ++ ++ K + + +++
Sbjct: 438 FHVIEIEDQKNEQKVVKLATINKQV-EVTEQTLNDLFTTSSKFESDAGKSDDAFVNVAKE 496
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + + G P + +++ F +D + ++ G ++ VQ
Sbjct: 497 RNYDVNPVNRIKELDASLAGM-----PQQREVIRWTFEEDTEVGDIRRFSVGSG-FIVVQ 550
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ A +EE V + K AE + + + K ++ G +
Sbjct: 551 VTAKHAAGLASVEEASARVLGTLRNKKKAEMIKAN--------NAGSKTLAELASAAGKA 602
Query: 528 LLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
++ G + + F+ +++ V +
Sbjct: 603 EQQATSLSMAAPIIPGAGAEKKVVGAAFALDKGATSGLIEGRTGVFMIQVVDKVEAPAKD 662
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
++ L SV+ LKS + + +
Sbjct: 663 TYLTEMNTLRNQRATKATSSVVEALKSSSEIEDNRGMF 700
>gi|225850233|ref|YP_002730467.1| hypothetical protein PERMA_0679 [Persephonella marina EX-H1]
gi|225646664|gb|ACO04850.1| hypothetical protein PERMA_0679 [Persephonella marina EX-H1]
Length = 461
Score = 91.1 bits (223), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/226 (14%), Positives = 71/226 (31%), Gaps = 14/226 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFIN 58
M I + + K L + F+ + + V +++ F
Sbjct: 1 MFAKI---AESKWMKFVLFITTFAFVGTAFVAIVIYKFAGNITGAAVVNGREISLQEFYY 57
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ + + + L+ ++ L Q E G+ A V
Sbjct: 58 QVNVIQNRLENQGVDTAPL----KKEIYDQALEAVIDRELLYQEAEKEGIAATKEEVKRA 113
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I F +D +FS D +++ L+ I+ + + + K LS + S+
Sbjct: 114 ILDVEAFK-EDGRFSKDRYIALLSGMNISPQLFEEIVRKDLSAQHLFTFLDASFYLSDEE 172
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
++ S D++ + S +++EK+K Y
Sbjct: 173 INSYVYKQLSKLSGDFLYIKP----QPLKISEEEAKRYYEKHKSEY 214
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/312 (12%), Positives = 85/312 (27%), Gaps = 21/312 (6%)
Query: 324 SLADSIFSLAKKGDFTPVIHG------SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
+ D+ F L+ + + V F Y+ I + E K
Sbjct: 160 TFLDASFYLSDEEINSYVYKQLSKLSGDFLYIKPQPLKISEEEAKRYYEKHKSEYTGKEG 219
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
+ + K +E + ++ I + KDV + +I
Sbjct: 220 KEVIIYRIDIDKNNQEKSEKLAKDLFLRLKKGETEIKNEDIKIIFKDVIYDDTDSISNIP 279
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
+ L + + P V D Y+ I+ E+V ++ K
Sbjct: 280 EELKKKLKEISPDKNIIFVKTDDAYYLSRFIRAVKE--PLPYEKVKDEIYSKLKEDYEKR 337
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN-RMDNENKFFGYDGISQVFSGP 556
V ++ E K + + K L R + + ++F
Sbjct: 338 AVKELYEKISKESDKG---IQSLMKKYDGKLEKIKDETVRDLIVRYGLTPEYM-KLFIKD 393
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY----LTQMMNKDLLDSVIAYLKS 612
E + +V+K+ +E + L L+ I L+
Sbjct: 394 REGIIPL----KDGILVYKIDKVTPPTDEESGELKKLVEPLLKNEKYNTLVQMYIDKLRK 449
Query: 613 QYSVTVHDNLIQ 624
+ ++ + +
Sbjct: 450 DAEIIRNERIFR 461
>gi|213584574|ref|ZP_03366400.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. E98-0664]
Length = 168
Score = 90.3 bits (221), Expect = 9e-16, Method: Composition-based stats.
Identities = 33/174 (18%), Positives = 68/174 (39%), Gaps = 10/174 (5%)
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
+ + V++ E P + L EV V K K ++ A +L++E K GK
Sbjct: 1 ITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLVEL-KAGK 59
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVV 573
+ K G S ++R + + S P + + + N + V+
Sbjct: 60 GAEAM-KAAGLSFGEPKTLSRTSQD----PVSQAAFALSLPTKDKPVYGVANDMQGNVVL 114
Query: 574 FKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
K G P +K + +TQ + + +++++ L+ + + + D L Q+
Sbjct: 115 LAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ 168
>gi|332293063|ref|YP_004431672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
diaphorus 4H-3-7-5]
gi|332171149|gb|AEE20404.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Krokinobacter
diaphorus 4H-3-7-5]
Length = 647
Score = 90.3 bits (221), Expect = 1e-15, Method: Composition-based stats.
Identities = 81/669 (12%), Positives = 192/669 (28%), Gaps = 82/669 (12%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K ++L L F+ + ++++ + + F +++ +I +
Sbjct: 1 MKHLFLLLIF------LCGFSFAHAQKDILLTINNEVIDSEEFTRVYEKNSELIKE---- 50
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ L + Q +GL + E++ K+
Sbjct: 51 -------DESNAPEDYLKLFIDYKLKVQEAYRLGLN-NKKSYQDELSAYRAQLAKN---- 98
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+++ + KE D L+ ++ PS+ L+ R ++
Sbjct: 99 ---YLNDVKVTEELVKEAYDRTVNELNARHILVRVSPDASPSDTLVAYRNITQARERIIN 155
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
DPS +K ++ +Y + +
Sbjct: 156 GENFEKVARAISEDPSAKKNGGNLGWFKAFKMVYPFENAAYNTAINEVSKPFRTSFGYHI 215
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF-----QSLKKGKKFIQLAEEQGKSL- 307
K K + L + E + L +G F +A
Sbjct: 216 VQPIAARKSKGKVQVAHIMVALNQNDSTIIPEERINEVSKLLSQGASFETVALNYSDDRA 275
Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV-- 362
L F + + + + FSL G + FG+ I + + P T
Sbjct: 276 SYKKGGKLEEFEQGQLSSAAFEKTAFSLENIGAISQPFKTEFGWHIIKLLSKTPVPTYLD 335
Query: 363 --------SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
++ + + + +K + + ++ S + +++ +
Sbjct: 336 ARVALTNKVTRDARAQVISNKLDSKLRNRYNVALNEGLQSYLESLFPEKYSETKIVLNNE 395
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
L + A K K L + ++ S+ V S++ V +K
Sbjct: 396 PALSNVAFTLGKKKATYTYKMVADYLLAKYPRNKFRSRSQFVEEGIQSFVSVVLKNYHLE 455
Query: 475 RDRKLEEVLTDVKKDWKT------------VKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ ++ D+ K++K K A++ S + L ++ ++ +
Sbjct: 456 HLEEEDQDFADILKEYKEGLLLFDLLETNIWKKAQQDSIGLQEFFLRNKEDYRSVKTYEA 515
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSG--------------------PVEMVKC 562
+ + + N +K D V S P
Sbjct: 516 TVCTTKSKSLAKNYRKIISKGLSPD--EAVLSLKSKSDTPVLLSNRVLTQQEFPKGQYLS 573
Query: 563 F----PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
IE+G +++V+ VT Q + K+L + + L+ + ++T+
Sbjct: 574 IGISDLIEDGDNFIVYDVTAITEARDQLLKDVRGVVISDYQKELENKFVKNLRDKSTITI 633
Query: 619 HDNLIQRYL 627
+ ++ R +
Sbjct: 634 NKEILNRLI 642
>gi|291515888|emb|CBK65098.1| PPIC-type PPIASE domain [Alistipes shahii WAL 8301]
Length = 676
Score = 89.9 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 66/677 (9%), Positives = 181/677 (26%), Gaps = 70/677 (10%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L +R V I + + + F++ ++ FS V + +K+ +S + + ++
Sbjct: 4 LNTLRTKF-GIVLSIIIALALLAFILSLKTEMGFSG-NDPRVGVIDGEKINYSEYYDQYE 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + S+ +S L L++ L + +GL ++
Sbjct: 62 TIKSQNNMQ-----ESDEQQSAMLANAAWQALIAKHVLTPGFDRMGLRVTEPERLAMVSG 116
Query: 122 SPLFHGKDNKF--------SHDVFVSRLAREGINEK------EYIDHYTKMLSRTDVVGM 167
N F S LA+ N + + + G+
Sbjct: 117 QHPSQAFYNAFADPRTGEYSVAAISQFLAQAETNPEAANAWAQLNEQARLEREVQKYFGL 176
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRA 226
GG+ ++L + + ++ S + ++ S+ + ++ +K+ ++
Sbjct: 177 VKGGVYVNSLEVARGVEAANKSFSGKWAGKKFSAVPDSLVKVSSGDVKAYYNSHKNQFKQ 236
Query: 227 PE----------------------------------------YKRISYILFDVHEKEKKI 246
+ R +
Sbjct: 237 TPSRTISYVVFEVSPTDDDLLALEKSVTEVGREFAAAEEVKTFVRANRNGKIADSYVSAA 296
Query: 247 EISNDELQA-EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
++S++E +A + T+ + + + + LA+
Sbjct: 297 QLSDEEAKALMAGEMYGPVLKNNEWTMSRALDSKMVPDSVGVRHIVLPYAQEALADSLLT 356
Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI-HGSFGYVIAHVSNIKPSFTVSF 364
L + + + F+ + A +I +
Sbjct: 357 VLKKGGDFAQTAARYSVYDATAANGGEVGVLPFSAFTGEFAAALANARQGDIVKIASGDA 416
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
++ + S D A
Sbjct: 417 IQLMQVYRADKPSKHVQVATITYPVEASAATRRDVHNQAGSFMVNAKGSAAAFADAASTA 476
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
VAAI ++ + + + + D S ++ K+ + A ++++
Sbjct: 477 AVTPRVAAIAQGDRTIRGLEDSREVARWAYGAKEGDLSAIFNVGKDYVIATLTEIDDNEY 536
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
++ + K +++ G + +LG+ + + +
Sbjct: 537 APLNKVSAQIRSQLLRDKKYDYIVKSL-SGSTLAEQAASLGSEVEDFSDVTFGSFYVNGV 595
Query: 545 GYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
G + + + S + P++ VF+V + K ++ + Q M + +
Sbjct: 596 GMEPRLVGAIASAEKGAL-SAPVKGLSGVYVFEVGDVKTDD-KQTAEGEKVRAQAMAEGM 653
Query: 603 LDSV-IAYLKSQYSVTV 618
I ++ +
Sbjct: 654 AQQFAIPAIQQMAKIQD 670
>gi|206603171|gb|EDZ39651.1| Protein of unknown function [Leptospirillum sp. Group II '5-way
CG']
Length = 234
Score = 89.9 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/166 (15%), Positives = 51/166 (30%), Gaps = 9/166 (5%)
Query: 1 MLEIIRK------ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54
MLE IRK + + + V WG S V + + +
Sbjct: 1 MLEWIRKVAVERPKVLGTLMILVGAIFVVSMGWWGFSAY--KSGKPGIVARINGTPLYAT 58
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
F ++ + + + + + +L N++ + L
Sbjct: 59 EFSRDYEIMKNNYQRLLNGALGKKILTELNFPGLVLRNMIFRQLWIDEANHLHLVVPDAV 118
Query: 115 VWGEIARSPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKML 159
V E++R P F + FS ++ L + K++ + L
Sbjct: 119 VVSEVSRIPFFQEGNPPAFSSKLYTQFLLETHQSAKDFEQSIREDL 164
>gi|315608313|ref|ZP_07883302.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
gi|315249943|gb|EFU29943.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
Length = 716
Score = 89.9 bits (220), Expect = 1e-15, Method: Composition-based stats.
Identities = 64/623 (10%), Positives = 155/623 (24%), Gaps = 47/623 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFINS 59
L IR SR + + F+ L + S V V +K+ F
Sbjct: 4 LGKIR--SRGLILICIIGFGLFAFIAEELFRSCESSRNDQRQQVGEVLGEKISVQDFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ +I + G + + + + V +++ +++GL + +
Sbjct: 62 LDEYQEVIKMQQGTE-TLSEEQLNQVKDMVWNTYVQSKLVEKEAKELGLTVTDTELQDVL 120
Query: 120 A--------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
++P + + +F LA N+ + + F+
Sbjct: 121 KAGTNPMLLQTPFVNQQTGRFDAASLQKFLADFKANKAAVNPQMQEQYQKIYNYWTFIEK 180
Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
LL + + + + + S L + + + +
Sbjct: 181 TLRQQLLAQKYQGLLAHCFLSNPVEAKMAFEDENQE-SQINLAAFPYSDIADNKVTVEES 239
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
+D + + + +++ + E
Sbjct: 240 DLKAKYDQLKARFYQPMESRDIKYVDIEVSAS------------PADRAALQKELAGYRT 287
Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
+ AE KS S + + F G + V + +
Sbjct: 288 QLAAAADPAEVVRKSGSLVEYIGVPVPRQFFPQDVAAQFDSMAVGVTSAVKESTLDNSLT 347
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
V + + + KA + +
Sbjct: 348 IVRLLGKVSLPDSVQFRSIQIGGETAAKA--------SATADSVYTALQGGADFEALAKK 399
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+A + +Q ++ ++K + V L GS + VQ+
Sbjct: 400 YGQTGAKTWATAQQLVGSLMQSNTPDQKSMVNAVRNGEVNKYNLVKLTQGS-IIVQVTAR 458
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ V +KK K + + + G + + G L T
Sbjct: 459 KAFSENYTAAV---IKKTNDFSKDTYRTAYNKFASFVSANSTGADIEKNAEKAGYRLQTL 515
Query: 532 NQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNS------KVG 582
N + + + + +F V + + +V + +
Sbjct: 516 NDMTTSTHNVANIHSTREALKWIFEAKEGEVSPMYECGDNNHLLVVVLDKIHNAGYRNMN 575
Query: 583 PVQEKDKFISYLTQMMNKDLLDS 605
Q K+ + + + + L +
Sbjct: 576 DAQVKEMLKAEVIRDKKAEQLMA 598
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/247 (12%), Positives = 67/247 (27%), Gaps = 20/247 (8%)
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
+ + G +++ + + L + + VA I +
Sbjct: 480 TYRTAYNKFASFVSANSTGADIEKNAEKAGYRLQTLNDMTTST-----HNVANIHSTREA 534
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAE 497
L +F + + + V + + A R + + V +K + K AE
Sbjct: 535 LKWIFEAKEGEVSPMYECGDNNHLLVVVLDKIHNAGYRNMNDAQVKEMLKAEVIRDKKAE 594
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE----NKFFGYDGISQVF 553
++ +K G K GA + NQ+ V
Sbjct: 595 QLMAKVK---------GVTGISAAKAKGAKVSMVNQVTFAAPVFVPLTGASEPALSGAVA 645
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ ++ +F+VT + P + DK + + L
Sbjct: 646 ATKKGQFSTHAVKGAAGVYLFQVTGRTMRPGKFDDKAQEAKLAQRAMQYAGNYMNELYLN 705
Query: 614 YSVTVHD 620
+V +
Sbjct: 706 GNVVDNR 712
>gi|307721334|ref|YP_003892474.1| hypothetical protein Saut_1415 [Sulfurimonas autotrophica DSM
16294]
gi|306979427|gb|ADN09462.1| conserved hypothetical protein [Sulfurimonas autotrophica DSM
16294]
Length = 488
Score = 89.5 bits (219), Expect = 1e-15, Method: Composition-based stats.
Identities = 60/399 (15%), Positives = 140/399 (35%), Gaps = 18/399 (4%)
Query: 1 MLEIIRKASRTWVAKIFL---VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ +++ + + I++ + F+ WG + + V VG ++
Sbjct: 1 MITWMQRHKKWLIITIWISTIAFVGAGFVGWGQYSY---GNKAGAVAKVGDVEISKGELQ 57
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++ + +Q + E+A+ GLDK+ L LV A L L +
Sbjct: 58 KTYSRLYAQYNQMFQGNFDEEKAKQFGLDKQALQQLVQQALLINLAHSYDLIITDKEMIA 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ F+ K+ +F + + L++ + KEY K L ++ + +
Sbjct: 118 ALKGQKAFY-KNGEFDKETYKLVLSQNRLTIKEYETELRKEL----LIQKTLKLLPVKTS 172
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
++ N + + L +++E K+N+ ++I
Sbjct: 173 KNEENILNTIFNIADKINYKVLSFDDIKVSLKDKELKKFWESKKNNFMTDVIYESNFIKV 232
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
K+ S+ ++ Y++N+ + + + + + + + K
Sbjct: 233 TPVSKKF----SDTKIAEYYKENRTHFKDSDGKILTLEAAKEKVLNELNAKEAKDKALRT 288
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF---TPVIHGSFGYVIAHVS 354
+A ++ K DI+L + + ++ +++K T I+ Y I ++
Sbjct: 289 YIAFKKNKLPDDIALQNAKISKSNNPFNTQTLDTVSKLALTKPYTKPINIDGIYYIFELT 348
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
I PS SF+E K ++ EK+ +
Sbjct: 349 KIVPSKPKSFEEAKSEVLPLYIAQIKKEKLMKLANNSVN 387
>gi|313887408|ref|ZP_07821098.1| conserved hypothetical protein [Porphyromonas asaccharolytica
PR426713P-I]
gi|332300810|ref|YP_004442731.1| peptidyl-prolyl cis-trans isomerase [Porphyromonas asaccharolytica
DSM 20707]
gi|312923176|gb|EFR33995.1| conserved hypothetical protein [Porphyromonas asaccharolytica
PR426713P-I]
gi|332177873|gb|AEE13563.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
asaccharolytica DSM 20707]
Length = 720
Score = 89.5 bits (219), Expect = 2e-15, Method: Composition-based stats.
Identities = 75/624 (12%), Positives = 175/624 (28%), Gaps = 36/624 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG----SSTVV-SVGRQKVPFSSF 56
L+ IR + + I + V + F+ + D L S S + V + +KV + +
Sbjct: 4 LQKIRNRAG--LLIIVVGVALLAFI---IGDGLRSGSSLLQDNKMVALKIDGKKVKYDEY 58
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
Q ++ + + V + ++ L++ L+Q + IGL V
Sbjct: 59 QQLLTQRTEPYERQRQGKLTDQD--RVQISNQLAQELIADYVLEQEAKAIGLRVTPAEVS 116
Query: 117 GEI--ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
I P FS + + +D + M
Sbjct: 117 ALIFGEGLPTSQWATQFFSQFGVDMGDPEQIRSIMSELDMDK----IKSLPAEQQSMMIS 172
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
+ ++ R + + AI + R P +
Sbjct: 173 VRNQWLETEKQIRTQRLSEKVNALLTRSYAINSLDEKYTVGLGTRTVAVVRTPSTILPND 232
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKN-KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ ++ + S+ +L A + K Y+S +R E + E D A L
Sbjct: 233 QVTVTDQQVQAYYDSHKQLYAFPFEQAKVNYYSTLVRPSEADYAAAKAEVDTARLQLLAT 292
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK--GDFTPVIHGSFGYVIA 351
++ + + + + ++ +++ L + G + + Y +
Sbjct: 293 TTPAKVVRNYDNGNAYETYFTDKELEQYLSTIPNAMTMLREGAIGSVNEPVVVNDSYTLI 352
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + K + + + + + SMDE +
Sbjct: 353 KLIDRKQAPEEVKVNLIPLDTTNALKADSLIAAIQSGSATLAQIVATYSMDEQVKANGGY 412
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
I+ + + E LF + + + + + ++ +
Sbjct: 413 LINQDSYT---------GMPDSTFTEAELFGMGLDTLTKTPINQFVKMERPGATLLVRRT 463
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P ++ + +T + +K N++ K D + G S++
Sbjct: 464 APTASVNHYKIAQLTVPINFSEETFRKEQAKINEIFTSDKSFDKMMED-AQAAGLSVVRG 522
Query: 532 NQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGPVQEK 587
+N + IS V VV +V Q
Sbjct: 523 EYVNSSSAALASIPNSREIISWALRSKAGAVSDKLFRCGENDYLVVAQVEKKYPAGFQPF 582
Query: 588 DKFISYLTQM-MNKDLLDSVIAYL 610
++ + + + + D + + L
Sbjct: 583 EQVADRVRDIVLMEQRGDQLASNL 606
>gi|89890152|ref|ZP_01201663.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
[Flavobacteria bacterium BBFL7]
gi|89518425|gb|EAS21081.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
[Flavobacteria bacterium BBFL7]
Length = 704
Score = 88.8 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 67/610 (10%), Positives = 170/610 (27%), Gaps = 45/610 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L IR S+ + + + + F+I GL + + +S++ SVG ++ +F +
Sbjct: 4 LGKIR--SQGLILILVIALALFAFIIQGLLTS-NGAAKASSLGSVGSTEIDREAFGRRVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ Q+ G ++ +A + D V A L+ I + G+E V ++
Sbjct: 61 ATM----QQRGAGTSTVQAV-----NSVWDAEVRDAVLNMQINEAGIEVSDEAVKNQVKS 111
Query: 122 S----PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
P+F ++ +FS + +A N+ E + + +
Sbjct: 112 MYANAPIFLDENGQFSEIKMNTFVADLKNNQPERYQLWLQDVENAADQSKQTQFFNLLKS 171
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + + + V + + +Y A +
Sbjct: 172 GIIGTQAAGEMEYRLANDNRSFTFVNIPYTSIADTEVEISKSEISSYIAKNESKFKSDAQ 231
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + +++ +A+ + + K S E + + ++
Sbjct: 232 RDIQYVVFEDKASEADKAKMKADMTKLLSSYEEFNENTNRTETYPGLDKVEDVETFVNSE 291
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
G L L + ++G + I+ + + K
Sbjct: 292 SDVPYDGSYLLTSKL-----------PATAKAIAALEEGATYGPYEDAAYMKISRLEDKK 340
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR----EKIVSI 413
+ + ++ ++ K + A + +
Sbjct: 341 TIMDSVQTKHILVAYAGATRSASTRSKEDAKKVADSIFATIGQSNSKFNTKWDYFNENTE 400
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D G P + LF +S+ I
Sbjct: 401 IAKGEDIGWVVYSGNARNFAPGFTKFLFENDKGSVGISESS---------FGYHIIHIQD 451
Query: 474 ARDRKLEEVLTDVKKDWKTVKTA-EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ + + K K +++ + A + + K+F ++ K +
Sbjct: 452 TKAPTEAVKIATIAKKVDASKATGKQLFTDAQKF--QQGAADKDFTEVAKEFTLDVKPVK 509
Query: 533 QINRMDNENKFF--GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ MD + F ++ E YV+ ++T + ++
Sbjct: 510 NLKAMDENLPGLQRNRSIVQWAFKEGTDIGDTERFETPEGYVIVQLTRKAEAGLMSAEEA 569
Query: 591 ISYLTQMMNK 600
+ +T ++
Sbjct: 570 SATVTPILRN 579
Score = 86.5 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 66/524 (12%), Positives = 135/524 (25%), Gaps = 26/524 (4%)
Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
I D +E + IA++ D + V ++ + TK+LS
Sbjct: 203 IADTEVEISKSEISSYIAKNESKFKSDAQRDIQYVVFEDKASEADKAKMKADMTKLLSSY 262
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
+ L F N D + + + + + E
Sbjct: 263 EEFNENTNRTETYPGLDKVEDVETFVNSESDVPYDGSYLLTSKLPATAKAIAALEEGATY 322
Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
L D ++ + + S E
Sbjct: 323 GPYEDAAYMKISRLEDKKTIMDSVQTKHILVAYAGATRSASTRSKEDAKKVADSIFATIG 382
Query: 283 ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ + K +G+ + + ++ + P + G
Sbjct: 383 QSNSKFNTKWDYFNENTEIAKGEDIGWVVYSGNARNFAPGFTKFLFENDKGSVGIS---- 438
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
SFGY I H+ + K IA ++ +KA+ K + + A
Sbjct: 439 ESSFGYHIIHIQDTKAPTE---AVKIATIAKKVDASKATGKQLFTDAQKFQQGAADKDFT 495
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
E+++ + + + + + + ++ F + + P+G
Sbjct: 496 EVAKEFTLDVKPVKNLKA-----MDENLPGLQRNRSIVQWAFKEGTDIGDTERFETPEG- 549
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
Y+ VQ+ A EE V + K A+ + + DI
Sbjct: 550 YVIVQLTRKAEAGLMSAEEASATVTPILRNKKKAKMIMDQITA---------TEVNDIAS 600
Query: 523 NLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENGLSYVVFKVTNS- 579
G + +NR G + + F PI V KVT
Sbjct: 601 AQGLNARAATAVNRKSPTIPGVGEEPKVVGTAFGLAEGET-SKPIAGEKGVFVVKVTAIE 659
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ + + ++ LK +T + +
Sbjct: 660 NAPDLGSYKADANEVASRTANQATSKLVEALKKSIEITDNRSTF 703
>gi|288925729|ref|ZP_06419660.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17]
gi|288337384|gb|EFC75739.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17]
Length = 716
Score = 88.8 bits (217), Expect = 3e-15, Method: Composition-based stats.
Identities = 64/623 (10%), Positives = 154/623 (24%), Gaps = 47/623 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFINS 59
L IR SR + + F+ L + S V V +K+ F
Sbjct: 4 LGKIR--SRGLILICIIGFGLFAFIAEELFRSCESSRNDQRQQVGEVLGEKISVQDFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ +I + G + + + + V +++ +++GL + +
Sbjct: 62 LDEYQEVIKMQQGTE-TLSEEQLNQVKDMVWNTYVQSKLVEKEAKELGLTVTDTELQDVL 120
Query: 120 A--------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
++P + + +F LA N+ + + F+
Sbjct: 121 KAGTNPMLLQTPFVNQQTGRFDAASLQKFLADFKANKAAVNPQMQEQYQKIYNYWTFIEK 180
Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
LL + + + + + S L + + + +
Sbjct: 181 TLRQQLLAQKYQGLLAHCFLSNPVEAKMAFEDENQE-SQINLAAFPYSDIADNKVTVEES 239
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
+D + + + +++ + E
Sbjct: 240 DLKAKYDQLKARFYQPMESRDIKYVDIEVSAS------------PADRAALQKEFAGYRT 287
Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
+ AE KS S + + F G + V + +
Sbjct: 288 QLAAAADPAEVVRKSGSLVEYIGVPVPRQFFPQDVAAQFDSMAVGVTSAVKESTLDNSLT 347
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
V + + + KA + +
Sbjct: 348 IVRLLGKVSLPDSVQFRSIQIGGETAAKA--------SATADSVYTALQGGADFEALAKK 399
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+A + +Q ++ ++K H V L GS + VQ+
Sbjct: 400 YGQTGAKTWATAQQLVGSLMQSNTPDQKSMVNAVRNGEVNKYHLVKLTQGS-IIVQVTAR 458
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ V +KK K + + G + + G L T
Sbjct: 459 KAFSENYTAAV---IKKTNDFSKDTYRTVYNKFASFVSANSTGADIEKNAEKAGYRLQTL 515
Query: 532 NQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNS------KVG 582
N + + + + +F V + + ++ + +
Sbjct: 516 NDMTTSTHNVANIHSTREALKWIFEAKEGEVSPMYECGDNNHLLIVVLDKIHNAGYRDMN 575
Query: 583 PVQEKDKFISYLTQMMNKDLLDS 605
Q K+ + + + + L +
Sbjct: 576 DAQVKEMLKAEVIRDKKAEQLMA 598
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/346 (13%), Positives = 100/346 (28%), Gaps = 29/346 (8%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ +L+ G F LA++ G++ + +GS + PD + + +
Sbjct: 384 YTALQGGADFEALAKKYGQTGAKTWATAQQLVGSLMQSNTPDQKSMVNAVRNGEVNKYHL 443
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V ++ + S + +KK V + + G
Sbjct: 444 VKLTQGSIIVQVTARKAFSENYTAAVIKKTNDFS---KDTYRTVYNKFASFVSANSTGAD 500
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+++ + + L + + VA I + L +F + +
Sbjct: 501 IEKNAEKAGYRLQTLNDMTTST-----HNVANIHSTREALKWIFEAKEGEVSPMYECGDN 555
Query: 461 GSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ V + + A R + + V +K + K AE++ +K G
Sbjct: 556 NHLLIVVLDKIHNAGYRDMNDAQVKEMLKAEVIRDKKAEQLMAKVK---------GVTGI 606
Query: 519 DIGKNLGASLLTTNQINRMDNE----NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
K GA + NQ+ V + ++ +F
Sbjct: 607 SAAKAKGAKVSMVNQVTFAAPVFVPLTGSSEPALSGAVAATKKGQFSTHAVKGAAGVYLF 666
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+VT + P + DK + + L +V +
Sbjct: 667 QVTGRTMRPGKFDDKAQEAKLAQRAMQYAGNYMNELYLNGNVVDNR 712
>gi|313159819|gb|EFR59175.1| PPIC-type PPIASE domain protein [Alistipes sp. HGB5]
Length = 677
Score = 88.4 bits (216), Expect = 3e-15, Method: Composition-based stats.
Identities = 68/677 (10%), Positives = 183/677 (27%), Gaps = 69/677 (10%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L +R V I + + F++ ++ FS V + +K+ +S + N ++
Sbjct: 4 LNTLRTKF-GIVLSIVIAGALLAFILSLKTEMGFSG-NDPRVGVIDGEKINYSEYYNQYE 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
Q + S +S L L+ L + +GL ++
Sbjct: 62 QVKAQSGAQ-----ESNEQQSAMLANAAWQALIGKYVLTPGFDKMGLRVTEPERMSMVSG 116
Query: 122 SPLFHGKDNKF-SHDVFVSRLAREGIN-------------EKEYIDHYTKMLSRTDVVGM 167
N F +A + + +G+
Sbjct: 117 QHPSQAFYNAFADPRTGEYNVAAVHQFLSEAEANAQAQQAWAQLNEQARMEREVAKFLGL 176
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYRA 226
GG+ ++L + + + ++ ++ + ++ +K+ ++
Sbjct: 177 IKGGVYVNSLEVANGVNSANNTYAGKWAGKKYSAVPDSLIQLKSSDIKAYYNSHKNMFKQ 236
Query: 227 PEYKRISYILFDVHEKEKKI-------------EISNDELQAEYEKNKEKYFSPEIRTVE 273
+ +SY++F+V + + + +EL++ N+ + + +
Sbjct: 237 TPSRALSYVVFEVSPTDDDMLALEKSVAEVGAQFAATEELKSFVRANRNGKIADNYVSAK 296
Query: 274 QLVFPNQKE----------------------------ADEAFQSLKKGKKFIQLAEEQGK 305
QL K + + LA+
Sbjct: 297 QLSEEEAKALLDGATYGPVLKNNEWTMARALDTKIVPDSMGIRHIVLPYTQEALADSLLT 356
Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI-HGSFGYVIAHVSNIKPSFTVSF 364
L + + + F+ + A +I +
Sbjct: 357 VLKGGADFAQVAAQYSVYDATAANGGEVGVMPFSAFSGEFAAALANAKTGDIVKIASGDA 416
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
++ + + D A
Sbjct: 417 IQLMQVYRADKPSKHVQVASITYPVEASAATRRDIHNQAGTFSVNAKGSVEAFNDAASAA 476
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+A++ E+ + + D + + D S ++ K+ + A ++++
Sbjct: 477 AVTPRIASLAQGERTIRGLEDSRDVARWAYGAEVGDVSEIFPVGKDYVIAMLTEIDDNEF 536
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN--ENK 542
+ A+ + K +++ G + K+LG + + +
Sbjct: 537 APLEKVSAQIRAQVLRDKKYDYIVKEL-SGSTLDEQAKSLGTEVADFDNVTFGAFYVNGP 595
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
F I + S + V P++ VF+V + + ++ + Q M + +
Sbjct: 596 GFEPRLIGAISSTTEKGVLSAPVKGLSGVYVFEVDDIQTSD-KQTAEGEKVRAQAMAESM 654
Query: 603 LDSV-IAYLKSQYSVTV 618
+ ++ +
Sbjct: 655 AQQFSVQAIQQMAKIQD 671
>gi|29349779|ref|NP_813282.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
VPI-5482]
gi|253569857|ref|ZP_04847266.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
gi|29341690|gb|AAO79476.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
VPI-5482]
gi|251840238|gb|EES68320.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
Length = 712
Score = 88.0 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 65/608 (10%), Positives = 163/608 (26%), Gaps = 41/608 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + + V V + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ +I G ++ ++ + ++ + V+ +++ + +GL + +
Sbjct: 61 EYTEVIKLSRGVTALNDE-QTNQVRDEVWRSYVNNKLVEKEAKALGLTVSAAEIQDILKA 119
Query: 121 -------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L D M M
Sbjct: 120 GVHPLLQQTPFRNPQTGAFDKDMLNKFL--------------------VDYAKMNESQMP 159
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
Y+ + + + + R +Y +
Sbjct: 160 AQYAEQYNNMYKYWSFIQKTLVQSRLAEKYQALVAKALLSNPVEAQDAFDARVNQYDLLM 219
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I + EL+ Y K KE++ + + + + E ++++
Sbjct: 220 AAVPYSSIVDSTIVVKESELKDLYNKKKEQFKQYQESRDIKYIDVQVTASAEDRAAIQQE 279
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+ S E + + + S G V
Sbjct: 280 VDEATAQLATTTDDYTSFIRSVGSEAPYVDLFYNKTAFPSDV--VARLDSASVGSVYGPY 337
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
N + SF+ V K A + + ED + + + + ++
Sbjct: 338 YNGADNTINSFKVVAKTAAADSIEFRQIQVFAEDALKTKALADSIYTAIKGGANFADLAK 397
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ A + L F + +++ + L + + +
Sbjct: 398 KYGQTGETNWMSSAQYEGAQIDGDNLKFISAINNTGVNEVVNLPLGQANVILQVTNKKAV 457
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
K+ V +V+ + +T + +Q + K + + G LL
Sbjct: 458 KDKYKVAVVKREVEF---SKETYNRAYNDFSQFIAANPTAEKMIAN-AEEAGYKLLDRRD 513
Query: 534 INRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ ++ + + FS V + V + +
Sbjct: 514 LYSSEHTIGGVRGTKEALRWAFSAKPGDVSGLYECGESDHMVAVALVGVTPEGYRPLKAV 573
Query: 591 ISYLTQMM 598
L +
Sbjct: 574 QDQLRAEI 581
>gi|228470909|ref|ZP_04055754.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
gi|228307306|gb|EEK16320.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
Length = 718
Score = 88.0 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 76/627 (12%), Positives = 179/627 (28%), Gaps = 38/627 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG----SSTVV-SVGRQKVPFSSF 56
L+ IR + + I + V + F+ + D L S S + V + +KV + F
Sbjct: 4 LQKIRNRAG--LLIIVVGVALLAFI---IGDGLRSGSSLLQDNKMVALKIDGKKVKYDEF 58
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ ++ + + + + ++ L+S L+Q + +GL V
Sbjct: 59 QQLLTERTEPYERQ--GKLTDQD--RMQISNQLTQELISDYVLEQEAKAVGLRVTPAEVS 114
Query: 117 GEI--ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
I P FS + + +D + M
Sbjct: 115 ALIFGEGLPTSQMAAQFFSQFGVNMGDPEQIRSVMSELDLNK----IKALPAEQQSMMIS 170
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
+ ++ R + + AI T + R P +
Sbjct: 171 VRNQWLETEKQIRSQRLSEKLNALLTRSYAINSLDEKYTTGLGSRTVAVVRTPSTILPND 230
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKN-KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ ++ + S+ +L A + K Y+S +R E + D A L
Sbjct: 231 QVKVTDQQVRAYYDSHKQLYAFPFEQAKVNYYSTLVRPSEADYAAAKANVDSARMQLLAT 290
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK--GDFTPVIHGSFGYVIA 351
++ + + + + + +++ L + G + + Y +
Sbjct: 291 TTPDKVVRNYENGHAYETYFTDKELEQFLSTQPNAMTMLREGAIGSVNEPVIVNDSYTLI 350
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + K + + + + + + SMD+ +
Sbjct: 351 KLIDRKQAPEEVKVNIIPLDSTNAPKADSLIAAIQSGATTLAQVVATYSMDDQIKANGGY 410
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
I+ G + E ++ + G+ + ++
Sbjct: 411 LINSDQYT-------GMPDSTFTESELFGMQLDTLNKTPINQFVKIERPGATLLIRKTA- 462
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P+ L ++ + +T + +K N++ K+ D + G S++
Sbjct: 463 -PSASVNLYKIAQLTVPINFSEETYRKEQAKINEIFSG-DKKFAQMMDAAQKAGLSVVRG 520
Query: 532 NQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPI--ENGLSYVVFKVTNSKVGPVQEK 587
+N + +S V N VV +V Q
Sbjct: 521 EYVNSSSASLASIPNSREIVSWALRSKAGAVSDKIFRCGNNDYLVVAEVETKYPAGFQPF 580
Query: 588 DKFISYLTQ-MMNKDLLDSVIAYLKSQ 613
++ + ++ + D + A L S+
Sbjct: 581 EQVADQIRDYVLMEQRGDQLAANLASK 607
>gi|86130561|ref|ZP_01049161.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
gi|85819236|gb|EAQ40395.1| peptidylprolyl isomerase [Dokdonia donghaensis MED134]
Length = 643
Score = 88.0 bits (215), Expect = 5e-15, Method: Composition-based stats.
Identities = 83/666 (12%), Positives = 175/666 (26%), Gaps = 89/666 (13%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ V F + S+ ++ V +V + F+ +++ L +I+
Sbjct: 4 LFIVCFFM-----PFVSLGQQEVLLKVNNDEVTTADFVRVYEKNLALINDT--------- 49
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
++ LD + Q GL + EIA GKD V
Sbjct: 50 --EENSPEQYLDLFIDYKLKVQEAYRKGLH-NKASYKKEIASYRTQLGKDYLNDVQVTDK 106
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
+ + L ++ P + L K R V
Sbjct: 107 LVEEA-------YNRTKNELRARHILVRVRPDALPKDTLAAFNKLLEARKRIVAGEDFAF 159
Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
DPS +K ++ +Y + +
Sbjct: 160 IASKYSEDPSAKQNGGDLGWFKAFKMVYPFENAAYTTKVNEVSQPFRTSFGYHIVQPTAS 219
Query: 260 NKEKYFSPEIRTVEQLVFPN-----QKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
+ + L + +++ E L KG F LA +
Sbjct: 220 RIAQGSVQVAHIMIALKQKDSSIIAEEKIKEVRALLAKGAAFETLALNYSDDKNSAKKGG 279
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP------------ 358
L +F K + ++ F L K GD + FG+ I + P
Sbjct: 280 VLSAFEKGQLSSSKFENTAFDLKKVGDISEPFKTKFGWHILKLIKKNPVLSFEKMKPSLT 339
Query: 359 --------------SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+E K + + + E Y+ +++ +
Sbjct: 340 KRVTKDSRARVLSQELNTRLREQYKITQEPEITSYFTSVLPEVYEEKLNVFTDDSALSKE 399
Query: 405 SRREKIVSIDLPLV-----------DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
+ + I + + +D K L+ + D
Sbjct: 400 AFKVGDQVITYKDIAQVLEKKYRKVPYVSRDYFVKREVENFVNNALITYHKSHLEEQDSD 459
Query: 454 HTVALPDGS----YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE--------VSS 501
+ + + + E + + T + + K +
Sbjct: 460 FGLLINEYKEGLLLFDLLKTEIWDKAQKDSVGLNTFYVNNIERYKALQTFTTRVFTTSQK 519
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
K L+ + +G+N + L + I D + GI ++
Sbjct: 520 KIASTYLKRNTQGENSNSVLSVLKKKHDSPIIITLKDFVKEDLPMSGIVKI-------GD 572
Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
++ G +YVV++V + + K L D + L+ ++TV+
Sbjct: 573 KELLKEGGNYVVYEVVSINEAMTNTLQNVRGQVMSDYQKFLEDIFVNRLREDSNITVNKT 632
Query: 622 LIQRYL 627
++ + +
Sbjct: 633 VLNKLI 638
>gi|297520133|ref|ZP_06938519.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Escherichia coli
OP50]
Length = 189
Score = 87.6 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/187 (14%), Positives = 67/187 (35%), Gaps = 14/187 (7%)
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
P + + ++I E P + L +V VK + ++ A
Sbjct: 11 ENGAPGINSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNNAEQQAKVDAE 70
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV---- 560
+L+++ K GK + + G ++R + F+ P+
Sbjct: 71 KLLVDL-KAGKGAEAM-QAAGLKFGEPKTLSRSGRD------PISQAAFALPLPAKDKPS 122
Query: 561 KCFPIENGLSYVVFKVTNSKVG--PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + V+ + K G P +K + +TQ + + +++++ L+ + + +
Sbjct: 123 YGMATDMQGNVVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKI 182
Query: 619 HDNLIQR 625
D L Q+
Sbjct: 183 GDALEQQ 189
>gi|282877139|ref|ZP_06285980.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
gi|281300737|gb|EFA93065.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310]
Length = 713
Score = 87.6 bits (214), Expect = 5e-15, Method: Composition-based stats.
Identities = 59/623 (9%), Positives = 162/623 (26%), Gaps = 36/623 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIW-GLSD-ALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IRK R + + + F+ G + V +KV F
Sbjct: 4 LGKIRK--RGLILISIIGLGLFAFIAEEGFRSCEASRNDRRQQIGEVLGEKVSVQDFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ +I + G N + + + + ++ +GL + +
Sbjct: 62 IDEYSEVIKMQQGVN-NLNEMQLNQVKDMVWQTYIQTKVVENEANKLGLTVTDAELQNIL 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
L + ++ L + P
Sbjct: 121 NEGTN--------------PMLMQTPFVNQQTGRFDANSLKKFLADYKTQQTANPQLAEQ 166
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
QA Y+ S + K E +
Sbjct: 167 YQALYKYWTFIEKTLRQQLLAQKYQSLLASCILSNPVEAKMAYKEANEESQIELATFPYS 226
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKKGKKFIQ 298
++ K++IS+ +L+A+YE+ K ++ + + A++ K K+
Sbjct: 227 SIEDSKVKISDADLKAKYEEVKGRFKQYVESRDIKYVTVQVAPSANDRAALQKSFTKYTA 286
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+ + + Y+ + + + + +FG + + N
Sbjct: 287 DLAAAADPANAVRKSTSLVNYLGLPVAKTAYAADIADRLDSMAVGQTFGPFESQMDNTLN 346
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ +++ D Q R + ++ ++ + + +
Sbjct: 347 VIKLVSKQLLPDSV-QYRQIQVMGATADEAQKRADSIYTALNGGADFELLAKKYGQTGEK 405
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
+ + + + + + +++ + + + +Q+ + ++
Sbjct: 406 TWLTTAQYQQAPSMDADTKTYINTLNNLGVSETRNMKLGQGN---VIIQVVDRRAMINKY 462
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
V +KK K + + ++ K G ++ I
Sbjct: 463 TAAV---IKKTIDFSKETYSTAYNKFSSFVSANQTPDKIAKNAKGCGYTVQEAKDITTST 519
Query: 539 NENKFFG--YDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKV------GPVQEKDK 589
+ D + +F + + N ++ + Q K+
Sbjct: 520 HTLVGINDTRDALKWLFEAKEGEISPMYECGNNDQLLLVVLDKIHPKGYRAYDDPQVKEM 579
Query: 590 FISYLTQMMNKDLLDSVIAYLKS 612
+ + + + L + +KS
Sbjct: 580 LKAEVMRDKKAEQLMAKAKDVKS 602
Score = 68.0 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/348 (12%), Positives = 96/348 (27%), Gaps = 21/348 (6%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG-DF 338
QK AD + +L G F LA++ G++ L + + P + +
Sbjct: 376 QKRADSIYTALNGGADFELLAKKYGQTGEKTWLTTAQYQQAPSMDADTKTYINTLNNLGV 435
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ + G + + ++ + +
Sbjct: 436 SETRNMKLGQGNVIIQVVDRRAMINKYTAAVIKKTIDFSKETYSTAYNKFSSFVSANQTP 495
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ + ++ + + + + G I L +F +
Sbjct: 496 DKIAKNAKGCGYTVQEAKDITTSTHTLVG-----INDTRDALKWLFEAKEGEISPMYECG 550
Query: 459 PDGSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
+ + V + + P R ++ V +K + K AE++ +KA +
Sbjct: 551 NNDQLLLVVLDKIHPKGYRAYDDPQVKEMLKAEVMRDKKAEQLMAKAKDVKS-------- 602
Query: 517 FRDIGKNLGASLLTTNQINRMDN----ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
K GA++ NQ+ V + P++
Sbjct: 603 -VSAAKAKGATVAPVNQVTFSAPVFVMSTGASEPALSGAVAATAKGQFSAKPVKGNAGVY 661
Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
VF+VTN P + + K + + + L + V
Sbjct: 662 VFQVTNRTTRPGKFEAKAEEDKARQKALQFAGNFMNELVIKAGVVDDR 709
>gi|333031477|ref|ZP_08459538.1| peptidyl-prolyl cis-trans isomerase [Bacteroides coprosuis DSM
18011]
gi|332742074|gb|EGJ72556.1| peptidyl-prolyl cis-trans isomerase [Bacteroides coprosuis DSM
18011]
Length = 712
Score = 87.6 bits (214), Expect = 6e-15, Method: Composition-based stats.
Identities = 67/612 (10%), Positives = 174/612 (28%), Gaps = 29/612 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + + + F I G + +F V V + + S +
Sbjct: 4 LQNIR--SKGPLLVGAIALALFAF-IAGDALKVFQPRQPHDVGEVDGKALSISEYQLLVD 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + G + + + + + VS + + +GL + + +
Sbjct: 61 EYTNIQKGFSGRN-SLSEMETNQIKDMVWNTYVSNQVIANEADKLGLVVTKAELNNILDQ 119
Query: 122 --SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+P F F+ + + EY G+ P+ +
Sbjct: 120 GVNPTFRIVPMFFNEQTGRFDKDKLFMFLAEYAKLSK------------TAGIDPNYMGS 167
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Q + I S + + R + + ++
Sbjct: 168 MQQLHALWAFVEKSLIQEKLAEKYMALVGSAFGTNKVEVESGIEGRLNQANLTAALIPFT 227
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ K+++++ +LQ EY+ KE + + + + ++L++
Sbjct: 228 SVDDSKVQVTDADLQKEYDAKKEMFKQDTESRQVKYIDVKINPSVADVEALEQEVSEYAE 287
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
K + + S IP + S+ + VI + +
Sbjct: 288 LLRNEKDNYASIINNTSGSNIPYNDVYLSLELYPED-----VIAHVKETSVGDTFGPYTN 342
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ K + + ++ + + L + + + +
Sbjct: 343 AQDATINAVKVVDKKNLPDSVQFRMLQIQGLEADALVKKSDSIVNALNNGASFKSIAEEE 402
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+ I +EQ + ++ ++ + G+ + + + KL
Sbjct: 403 QQPSEAFWISENTIANQEQFVLYNTLSTMQPNEIKSLPVQSGNIILQLVDRKVFKDKYKL 462
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
V ++ + +TA + + +Q V E + ++ D + G S+ T M
Sbjct: 463 AVVKRTME---ISSETANKAYNDFSQFVAE-NSTVQSMIDNAEEAGYSVSTQELTTSMHT 518
Query: 540 ENKFFG-YDGISQVFSGPVEMVK-CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
+ + +F V + G +V +T+ + L +
Sbjct: 519 VGNISSTKEAVRWIFDSKTGQVSNIYECGEGDHLLVVGLTDIIPAGYRPLSYVKDGLKNL 578
Query: 598 MNKDLLDSVIAY 609
+ + +
Sbjct: 579 VLNNKKAEYLEN 590
>gi|282880786|ref|ZP_06289482.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
gi|281305320|gb|EFA97384.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1]
Length = 713
Score = 87.6 bits (214), Expect = 6e-15, Method: Composition-based stats.
Identities = 55/625 (8%), Positives = 172/625 (27%), Gaps = 36/625 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
L IRK R + + + F+ G S + V V +KV F
Sbjct: 4 LGKIRK--RGMILISIIGLGLFAFIAEEGFRSCEASRNDQRQQVGKVLGEKVNVQDFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ +I + G N + + + + ++ + IGL + +
Sbjct: 62 MDEYTEVIKMQQGVD-NLNEMQMNQVKDMVWQTYIQTKVVEDEAKKIGLTVTDAELQNIL 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
A F + + G + + + + +
Sbjct: 121 AEGTNPMLMQTPFVN-------RQTGRFDVNSLKKFIADYKTQQTANPQMAAQYQTLYKY 173
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ + + +++P A L+ E + + + + + +
Sbjct: 174 WTFIERTLRQQILAQKYQSLLAGCILSNPVEAKLSYKEENEESSIQLATFAYSTIDDSKI 233
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI-Q 298
++ ++ DEL+ +++N E + + ++ E + F+ +
Sbjct: 234 KVQDADLKAKYDELKERFKQNVESRDIKYVTVRVEPSPADRAELQQTFKKYTTDLAAASE 293
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
A KS S ++ + G + N+
Sbjct: 294 PANVVRKSTSLVNYLGIPVAKTAYPNDIADKLDSMAVGQTYGPFETKMDNSM----NVVK 349
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ + K + ++ + L G + + I+++ +
Sbjct: 350 LISKQLLPDSVQYRQIQVMGKTPAEAQKRADSIYTALNAGAAFETIAKKYGQSGEKV--- 406
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
+ + + + + + +++ + L G+ + +
Sbjct: 407 -WMTTAQYQNAPSLDADTKTYIGTL--NNSGVNELKNIKLGQGNLIVQVVDRRAMINKYT 463
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
+ + D+ ++ + ++ + ++ ++ + K+ G ++ I
Sbjct: 464 AAVIKKSI--DFSKDTYSKAYNKFSS--FVSANQTPESIQKNAKSSGYTVQDAKDITTST 519
Query: 539 NENKFFG--YDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKV------GPVQEKDK 589
+ + + +F + + N ++ + Q K+
Sbjct: 520 HTLVGINATREAMKWLFDAKEGEISPMYECGNNDQLLLVVLDKIHPKGYRSYDDPQVKEF 579
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQY 614
+ + + + L + +K+
Sbjct: 580 LKAEVLRDKKAEQLMAKAKDVKNIA 604
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/347 (12%), Positives = 105/347 (30%), Gaps = 19/347 (5%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
QK AD + +L G F +A++ G+S + + + + P + + +
Sbjct: 376 QKRADSIYTALNAGAAFETIAKKYGQSGEKVWMTTAQYQNAPSLDADTKTYIGTLNN--S 433
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
V + ++ + + I + + + Y + F++
Sbjct: 434 GVNELKNIKLGQGNLIVQVVDRRAMINKYTAAVIKKSIDFSKDTYSKAYNKFSSFVSANQ 493
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + I + K + D + I + + +F +
Sbjct: 494 TPESIQKNAKSSGYTVQ--DAKDITTSTHTLVGINATREAMKWLFDAKEGEISPMYECGN 551
Query: 460 DGSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ + V + + P R ++ V +K + K AE++ +KA +
Sbjct: 552 NDQLLLVVLDKIHPKGYRSYDDPQVKEFLKAEVLRDKKAEQLMAKAKDVKN--------- 602
Query: 518 RDIGKNLGASLLTTNQINRMDN----ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
+ GA + NQI V + P++ V
Sbjct: 603 IAAAQAKGAKVDAVNQITFAAPVFVMSVGASEPALSGAVAATAKGKFSSRPVKGNAGVYV 662
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
F+VT + P + K T+ + + L + ++ +
Sbjct: 663 FEVTGRTMRPGKFDAKTEEQKTRQKALQYAGNFMNELILKANIEDNR 709
>gi|298384049|ref|ZP_06993610.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_14]
gi|298263653|gb|EFI06516.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_14]
Length = 712
Score = 87.6 bits (214), Expect = 6e-15, Method: Composition-based stats.
Identities = 64/608 (10%), Positives = 163/608 (26%), Gaps = 41/608 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + + V V + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ +I G ++ ++ + ++ + V+ +++ + +GL + +
Sbjct: 61 EYTEVIKLSRGVTALNDE-QTNQVRDEVWRSYVNNKLVEKEAKALGLTVSAAEIQDILKA 119
Query: 121 -------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L D M M
Sbjct: 120 GVHPLLQQTPFRNPQTGAFDKDMLNKFL--------------------VDYAKMNESQMP 159
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
Y+ + + + + R +Y +
Sbjct: 160 AQYAEQYNNMYKYWSFIQKTLVQSRLAEKYQALVAKALLSNPVEAQDAFDARVNQYDLLM 219
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I + EL+ Y K KE++ + + + + E ++++
Sbjct: 220 AAVPYSSVVDSTIVVKESELKDLYNKKKEQFKQYQESRDIKYIDVQVTASAEDRAAIQQE 279
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+ S E + + + S G V
Sbjct: 280 VDEATAQLATTTDDYTSFIRSVGSEAPYVDLFYNKTAFPSDV--VARLDSASVGSVYGPY 337
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
N + SF+ V K A + + ED + + + + ++
Sbjct: 338 YNGADNTINSFKVVAKTAAADSIEFRQIQVFAEDALKTKALADSIYTAIKGGANFADLAK 397
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ A + L F + +++ + L + + +
Sbjct: 398 KYGQTGETNWMSSAQYEGAQIDGDNLKFISAINNTGVNEVVNLPLGQANVILQVTNKKAV 457
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
K+ V +V+ + +T + +Q + K + + G LL
Sbjct: 458 KDKYKVAVVKREVEF---SKETYNRAYNDFSQFIAANPTAEKMIAN-AEEAGYKLLDRRD 513
Query: 534 INRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ ++ + + F+ V + V + +
Sbjct: 514 LYSSEHTIGGVRGTKEALRWAFAAKPGDVSGLYECGESDHMVAVALVGVTPEGYRPLKAV 573
Query: 591 ISYLTQMM 598
L +
Sbjct: 574 QDQLRAEI 581
>gi|256828792|ref|YP_003157520.1| SurA domain-containing protein [Desulfomicrobium baculatum DSM
4028]
gi|256577968|gb|ACU89104.1| SurA domain protein [Desulfomicrobium baculatum DSM 4028]
Length = 305
Score = 87.6 bits (214), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/243 (12%), Positives = 73/243 (30%), Gaps = 18/243 (7%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
+ F++ GL + V V + + F + +G + A +
Sbjct: 14 LFFVLAGLGQ--AAQLVDRIVAVVNGEIITFQDLQQQIRLSVGQ---------TPDPATA 62
Query: 83 VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
+ ++LD ++ L Q + + +E V EI + + S + F L
Sbjct: 63 EKIAPQVLDGMIDDVILRQEAQRLKIEVSDSEVDNEIRQFKA----RRRLSEEDFERTLR 118
Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
+G+ +++ + + +++ ++G V A + V
Sbjct: 119 LQGLTPEQFKERSREDITKHKMLGYMVRRKVVVTQEEIDAYMEQNR---SELTTERIVDV 175
Query: 203 PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
+ ++ + + E Y + E ++S EL +
Sbjct: 176 QMLVLVDEERANSLWKSLSEGEVSLEEAVERYSIGPKAENGVMRDVSWRELAEPWRDGLR 235
Query: 263 KYF 265
Sbjct: 236 NLS 238
Score = 37.5 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 25/276 (9%), Positives = 89/276 (32%), Gaps = 13/276 (4%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + ++FQ++++ I + T ++ ++ + + + + ++R KI
Sbjct: 30 RIVAVVNGEIITFQDLQQQIRLSVGQTPDPATAEKIAPQVLDGMIDDVILRQEAQRLKIE 89
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D VD + K + + E+ L + + + + ++
Sbjct: 90 VSDSE-VDNEIRQFKARRRLSEEDFERTLRLQGLTPEQFKERSREDITKHKMLGYMVRRK 148
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEV------SSKANQLVLEYSKEGKNFRDIGKNLG 525
+ +++ + + + T + + +AN L S+ + + +
Sbjct: 149 VVVTQEEIDAYMEQNRSELTTERIVDVQMLVLVDEERANSLWKSLSEGEVSLEEAVERYS 208
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV----TNSKV 581
N + R + + + + + P +V+ K+ +
Sbjct: 209 IGPKAENGVMRDVSWRE-LAEPWRDGLRNLSAGEL-SKPFLVQDKWVILKLLDRRDGVRQ 266
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+++ + + ++ + L+S+ +
Sbjct: 267 EDAAVEEEVREAIMRPKLEERFKEYMNGLRSKAIIQ 302
>gi|188996999|ref|YP_001931250.1| hypothetical protein SYO3AOP1_1079 [Sulfurihydrogenibium sp.
YO3AOP1]
gi|188932066|gb|ACD66696.1| hypothetical protein SYO3AOP1_1079 [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 460
Score = 87.6 bits (214), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/226 (15%), Positives = 91/226 (40%), Gaps = 14/226 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFIN 58
M + I S++ I L + F+ + + + V V +++PF F
Sbjct: 1 MFDKI---SQSKWKNIVLFITVFAFVATSIVAIIVYKLSGEINGVAEVNGKEIPFYEFNY 57
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+++ + + + N + + K+++++L+ L Q E G+ A +V E
Sbjct: 58 AYEMTARNMQMQNLDISNLKD----QIKKEVVNDLIEKELLYQEAEKEGITATSEQVKNE 113
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I + F + KF ++ + G+ + + K LS ++ + + + S+
Sbjct: 114 ILKISAFQV-NGKFDKQTYLQIINSFGLTPDAFENILRKELSVNNLKTILLSTIYVSDEE 172
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
++ + S + ++ + + ++ +++E++K +Y
Sbjct: 173 IETFTKKQLTRVSGEATIIKPNTP----EITEEMIKKFYEEHKKDY 214
>gi|262039460|ref|ZP_06012764.1| foldase protein PrsA [Leptotrichia goodfellowii F0264]
gi|261746527|gb|EEY34062.1| foldase protein PrsA [Leptotrichia goodfellowii F0264]
Length = 607
Score = 87.2 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 71/627 (11%), Positives = 175/627 (27%), Gaps = 44/627 (7%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS------STVVSVGRQKVPFSSFI 57
+RK + K + L + F + + + + + V +K+
Sbjct: 2 SVRKHKN--IIKGISIALIIAFALSMVYAGWNFLKNNVFIERKKVIAEVNGEKIYADDME 59
Query: 58 NSWK-----------QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
S+ Q I+Q G N + L + +L L+ L +D+
Sbjct: 60 KSYADLSSRLDSIVAQRKQQIAQLGGNPDNFKSLPEELLREYLLKGLIDQKLLLSSAKDL 119
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
++ + + + + F+ L G N Y + + V
Sbjct: 120 KVKVSSADIDKIVEN-----DQKQAGGKENFIRLLGTNGYNLTTYKEFIRDKMLLEKVAE 174
Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
+ S+ L +A Y D + + ++
Sbjct: 175 KIESSSKISDEELKKAYERYKYFNFQDQTFEEAKPQLIETLNGDNEQMLISSYLVKAWKN 234
Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
+ K + + + K+ I+ ++ + K + + +I T+ EA
Sbjct: 235 AKIKIKNDDVKKIDYKKMYENITKTIVEKDGYKFEGGSLNEKIITMFVNSENGYSEALRE 294
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+L E K+ + S I +++ + + P
Sbjct: 295 EAKKSLESDLNKLIEIAKKAKAAGIKASPEAAGIQELNDYAKKYYSYLIDTYKPTEQAML 354
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ T++ Q V ++ K+ E L +++ +
Sbjct: 355 ERFNSKRETYNIQNTIAGQVVGDYFQPSKA-------DFDEVKKKAEELIKTVNVENFGQ 407
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ K +S D D G+ +P + + + + V G ++
Sbjct: 408 KAKELSQDPGSKDNGGQLGVIDLSGMVPEFAEAVKKA----EKGKIVGPVKTQFGYHIIY 463
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
E + + +V + + T +E+ K L E + + ++ +
Sbjct: 464 --VEDKDSSNSDKAKVSHILLTPSVSEATKQELIKKMKTLKDELTAKKVTWQQVNTQDKY 521
Query: 527 SLLTTNQINRMDNENKFFG-----YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
Q ++ G + +++F+ V + + Y + +
Sbjct: 522 KFEIKEQFKKLTKSQPIPGVGKYDSELSNKLFASKVGDI--IEHQTEYGYFLLSKISEVP 579
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIA 608
D + + + ++ I
Sbjct: 580 FKEVTFDSVKERIRLELAFEHVNEEIE 606
Score = 45.6 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 45/453 (9%), Positives = 122/453 (26%), Gaps = 27/453 (5%)
Query: 50 KVPFSSFINSWKQELG-MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
K+ ++++ + + ++ D + L+S + + ++ +
Sbjct: 181 KISDEELKKAYERYKYFNFQDQTFEEAKPQLIETLNGDNE--QMLISSYLVKAW-KNAKI 237
Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
+ + V + + + + + Y + ++ MF
Sbjct: 238 KIKNDDVKKI--------------DYKKMYENITKTIVEKDGYK--FEGGSLNEKIITMF 281
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
V + L + + E+ I + + A S
Sbjct: 282 VNSENGYSEALREEAKKSLESDLNKLIEIAKKAKAAGIKASPEAAGIQELNDYAKKYYSY 341
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ + +Q + + V +E +
Sbjct: 342 LIDTYKPTEQAMLERFNSKRETYNIQNTIAGQVVGDYFQPSKADFDEVKKKAEELIKTVN 401
Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G+K +L+++ G + LG + A+++ A+KG + FGY
Sbjct: 402 VENFGQKAKELSQDPGSKDNGGQLGVIDLSGMV-PEFAEAVK-KAEKGKIVGPVKTQFGY 459
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I +V + S + + + + E +K+ +E A + +++ ++
Sbjct: 460 HIIYVEDKDSSNSDKAKVSHILLTPSVSEATKQELIKKMKTLKDELTAKKVTWQQVNTQD 519
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
K K + D + Y +
Sbjct: 520 KYKFEIKEQFKKLTKSQ-----PIPGVGKYDSELSNKLFASKVGDIIEHQTEYGYFLLSK 574
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+P ++ + V ++ + EE+
Sbjct: 575 ISEVPFKEVTFDSVKERIRLELAFEHVNEEIEK 607
>gi|304383132|ref|ZP_07365606.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
gi|304335709|gb|EFM01965.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
Length = 713
Score = 87.2 bits (213), Expect = 7e-15, Method: Composition-based stats.
Identities = 56/618 (9%), Positives = 166/618 (26%), Gaps = 31/618 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR S+ + I + V F+ + S + V + +KV F
Sbjct: 4 LGKIR--SKGLILIIIISVGLFAFIAEEFVRSCEATRNNERQQVGEIMGEKVSVQDFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
++ +I G N + + + V +++ E +GL + +
Sbjct: 62 VEEYTNVIKMTQGRE-NLTDEEQNQVKDMVWNTYVQNKLIEKETEKLGLTVTDQELQNIL 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
L + ++ L + P
Sbjct: 121 NEGTN--------------PMLLQTPFVNQQTGRFDANALKKFLADYKTAKTGDPRAAEQ 166
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Q ++ + K E
Sbjct: 167 YQQLYDFWTFIEKTLRQQTLSQKYQSLLAHCLLSNPVEAKMAFKAENEESNVQLAAFPYS 226
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ ++++++ +L+A+Y++ K ++ E + V + + + L K +
Sbjct: 227 SINDNQVKVTDADLKAKYDELKPRFKQYEETRDIKFVDVHVQASAADRSVLFKSVNELTD 286
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ +++ S S V ++ + F + G+ + + + +
Sbjct: 287 QLKAVSDPAEVIRKSNSAVPYLGVPVSKNAFPQDIAQRIDSMAVGTVYGPVENKQDNTLN 346
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + + Q R+ + + ++ + +
Sbjct: 347 VIRLMAKSQLPDSIQFRVIQIGGVSVDAARKTADSVYTALKGGAEFDALAKKYGQTGERT 406
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+ + + + + + + ++ + + + +Q+ + ++ +
Sbjct: 407 WMTTRQYEQSPSMDNDTKTYIEALNTQPVNEIRNIAMTSGN---VILQVVDRKGMTEKYI 463
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
V +KK K + + ++ + G + + +
Sbjct: 464 AAV---IKKPIDFSKNTYSAAYNKFSKFVSENQTLDGIQKNAAKYGFKVQEAGDVRTSQH 520
Query: 540 ENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
D + VF V + + +V + + + +
Sbjct: 521 YVAGIHSTRDAMKWVFDAKEGEVSPLYECGDNDHLLVIVLNKIHPMGYRDLDDAQVKDLV 580
Query: 595 TQMMNKDL-LDSVIAYLK 611
Q + +D+ +++I LK
Sbjct: 581 RQEVLRDMKANTLINKLK 598
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 67/569 (11%), Positives = 160/569 (28%), Gaps = 35/569 (6%)
Query: 66 MISQKIGFVVNSERARSVGLDKKILDN----LVSGATLDQFIE-DIGLEADHGRVWGEIA 120
+++ + + L ++ L L++ L +E + +A++ ++A
Sbjct: 162 RAAEQYQQLYDFWTFIEKTLRQQTLSQKYQSLLAHCLLSNPVEAKMAFKAENEESNVQLA 221
Query: 121 RSP--LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
P + K + ++ K+Y + V +
Sbjct: 222 AFPYSSINDNQVKVTDADLKAKYDELKPRFKQYEETRDIKFVDVHVQASAADRSVLFKSV 281
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
+ + + + I +N VP + P + + + A
Sbjct: 282 NELTDQLKAVSDPAEVIRKSNSAVPYLGVPVSKNAFPQDIAQRIDSMAVGTVYGPVENKQ 341
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ ++ +L + + V +K AD + +LK G +F
Sbjct: 342 DNTLNVIRLMAKSQLPDSIQFRVIQIGGVS-------VDAARKTADSVYTALKGGAEFDA 394
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
LA++ G++ + + E P + + A I + +
Sbjct: 395 LAKKYGQTGERTWMTTRQYEQSPSMDNDTKTYIEALNTQPVNEIRNIAMTSGNVILQVVD 454
Query: 359 SFTVSFQEVKKDIANQMRITK-ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
++ + + I + +K + + + + + + +
Sbjct: 455 RKGMTEKYIAAVIKKPIDFSKNTYSAAYNKFSKFVSENQTLDGIQKNAAKYGFKVQEAGD 514
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
V VA I + VF + + + + + + P R
Sbjct: 515 V-----RTSQHYVAGIHSTRDAMKWVFDAKEGEVSPLYECGDNDHLLVIVLNKIHPMGYR 569
Query: 478 KLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
L++ V V+++ A + +K G K GA++ NQI
Sbjct: 570 DLDDAQVKDLVRQEVLRDMKANTLINKLK---------GVTSIAAAKGKGATVQAVNQIT 620
Query: 536 RMDN----ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
V + P++ +F+VT PV+ K
Sbjct: 621 FAAPVFIASTGAAEPALSGAVSAVGKGRFSPHPVKGMAGVYLFQVTGKTTRPVKFDAKAY 680
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ L + + L ++ V +
Sbjct: 681 EQKMKQHAMQLAGNFMQELYAKAKVVDNR 709
>gi|91761956|ref|ZP_01263921.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique
HTCC1002]
gi|91717758|gb|EAS84408.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique
HTCC1002]
Length = 473
Score = 87.2 bits (213), Expect = 8e-15, Method: Composition-based stats.
Identities = 54/480 (11%), Positives = 139/480 (28%), Gaps = 10/480 (2%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+ + S+ + + L+ + + +G FS + + + + F++ +
Sbjct: 1 MINPFKNFSKKKIGGLLLIFVIIVAFGFGGFGGGFSTGNQNNIAKINNTNISTQDFMD-Y 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E G+ Q I ++ + +++L LVS LD IE++ L + +I
Sbjct: 60 LNESGLSQQVIKENID------KNIIEELLSTLVSTTLLDLEIEELNLSITEDVLIRKIK 113
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ FH ++ F ++ L + + + + GG + L++
Sbjct: 114 NNKNFHDENGLFQRTLYEKFLLTNNSSAAMFEIRLKNNELQKQLFTYISGGTKSPEFLIN 173
Query: 181 QAKRFYFENRSVDYIV-LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ + + ++YI + ++ K ++ + ++
Sbjct: 174 KFYKENNKKLDIEYIDLSTFYKKKEMFTDNDIKFFVEENAEKLKQDYIDFSFVEISPKNL 233
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ + D++ + + I +
Sbjct: 234 LGIDDFNQAFFDKIDDIENQISKNIDFKTIVKNLDISPTEVNSYINLDNKKIIENMIYNS 293
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
E++ + L + F L D + K+ + ++
Sbjct: 294 REDKIEILENNGAYIFYNINNSISKLPDLENPIFKEQITNLLFQKEKFEFNKNILE--KI 351
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+F +V D + I + D K+ E I+ I + + +
Sbjct: 352 NKKTFNQVSFDEFGKNNIKEIKLDSINDTKKFETNSIQILYSLPINSFTLIANNENDVFI 411
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+ K + + G + + L + V + E R +
Sbjct: 412 AKTIKYEEKNINKNSANFGKISSEEGAQSKNNILKSYDLFLNNRYQVVVNEKTLERVKNY 471
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 41/483 (8%), Positives = 121/483 (25%), Gaps = 18/483 (3%)
Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
+ + K + ++ + + + ++ ++ +
Sbjct: 1 MINPFKNFSKKKIGGLLLIFVIIVAFGFGGFGGGFSTGNQNNIAKINNTNISTQDFMDYL 60
Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
+ S E N + E E+ +++ KN + +
Sbjct: 61 NESGLSQQVIKENIDKNIIEELLSTLVSTTLLDLEIEELNLSITEDVLIRKIKNNKNFHD 120
Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
L + + + K +L ++ +S +
Sbjct: 121 ENGLFQRTLYEKFLLTNNSSAAMFEIRLKNNELQKQLFTYISGGTK---------SPEFL 171
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
+ F + +E + + E +
Sbjct: 172 INKFYKENNKKLDIEYIDLSTFYKKKEMFTDNDIKFFVEENAEKLKQDYIDFSFVEISPK 231
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+ +++F + + +ID + + + I + +
Sbjct: 232 NLLGIDDFNQAFFDKIDDIENQISKNIDFKTIVKNLDISPTEVNSYINLDNKKIIENMIY 291
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ K + + D + + + E + ++
Sbjct: 292 NSREDKIEILENNGAYIFYNINNSISKLPDLENPIFKEQITNLLFQKEKFEFNKNILEKI 351
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ + +F + GKN + + N+ K F + I ++S P+
Sbjct: 352 NKKTFNQ-VSFDEFGKNNIKEIKLDSI-----NDTKKFETNSIQILYSLPINSFTLIANN 405
Query: 567 NGLSYV---VFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
++ + + K S ++L S +L ++Y V V++ +
Sbjct: 406 ENDVFIAKTIKYEEKNINKNSANFGKISSEEGAQSKNNILKSYDLFLNNRYQVVVNEKTL 465
Query: 624 QRY 626
+R
Sbjct: 466 ERV 468
>gi|217969876|ref|YP_002355110.1| SurA domain protein [Thauera sp. MZ1T]
gi|217507203|gb|ACK54214.1| SurA domain protein [Thauera sp. MZ1T]
Length = 438
Score = 87.2 bits (213), Expect = 8e-15, Method: Composition-based stats.
Identities = 58/493 (11%), Positives = 132/493 (26%), Gaps = 77/493 (15%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
I + + + + A +V V V + + +Q ++++ G
Sbjct: 10 VAIAIGLAATTLAL-PVHSAPRAVEVDRIVAVVNNEVITGLELRARIEQTRRQLARQ-GA 67
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E L +++L+ L+ Q + L D + I R +NK S
Sbjct: 68 QLPPEEV----LQRQLLERLIVERAQLQLARESSLRVDDVTLDRAIERIAS----NNKLS 119
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D + L ++G+ + D + T + V
Sbjct: 120 IDQLRATLEKDGVTWSRFRDEIRSEILLTRLREREVDSRIV------------------- 160
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
++A + + D + E+ +L +
Sbjct: 161 --------------VTDAEIDNFIANNPDAFSGQEFAVAHILLRTPEGASPQQV------ 200
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
+ V ++ +S + + + L SLG
Sbjct: 201 --------------------EAVARRAEQVMARLRSGEDFARVAAEVSDAPDGLQGGSLG 240
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ +P +L + G+ +PV+ + G I + + + + Q++++ A
Sbjct: 241 WRPLDRLP--ALFADAVRRMRPGETSPVLRSAAGLHIVRLVDARGGGAAAVQKLEQTRAR 298
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I + E L ++ + D +
Sbjct: 299 HILIKTSEV----LSDADAEARLLAIRERVVNGADFAELAKASSADLSAARGGDLGWLNP 354
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
R P V P G ++ ++ +D E ++ +
Sbjct: 355 GDTVPEFERAMNALRPGEVSAPVRSPFGWHLIQLVE--RRMQDVTDERKRAAARQALRER 412
Query: 494 KTAEEVSSKANQL 506
K + QL
Sbjct: 413 KAEQAYEDWLRQL 425
Score = 39.8 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 18/203 (8%), Positives = 59/203 (29%), Gaps = 4/203 (1%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + D G + LF + + V V++ ++
Sbjct: 223 VAAEVSDAPDGLQGGSLGWRPLDRLPALFADAVRRMRPGETSPVLRSAAGLHIVRLVDAR 282
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASLL 529
++++ + + + A +L + G +F ++ K A L
Sbjct: 283 GGGAAAVQKLEQTRARHILIKTSEVLSDADAEARLLAIRERVVNGADFAELAKASSADLS 342
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
+ + + + V P+ + + + ++ ++ V ++ K
Sbjct: 343 AARGGDLGWLNPGDTVPEFERAMNALRPGEV-SAPVRSPFGWHLIQLVERRMQDVTDERK 401
Query: 590 FISYLTQMMNKDLLDSVIAYLKS 612
+ + + + +L+
Sbjct: 402 RAAARQALRERKAEQAYEDWLRQ 424
>gi|71083623|ref|YP_266342.1| SurA-like protein [Candidatus Pelagibacter ubique HTCC1062]
gi|71062736|gb|AAZ21739.1| hypothetical SurA-like protein [Candidatus Pelagibacter ubique
HTCC1062]
Length = 473
Score = 86.8 bits (212), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 85/228 (37%), Gaps = 8/228 (3%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+ + S+ + + L+ + + +G FS + + + + F++ +
Sbjct: 1 MINPFKNFSKKKIGGLLLIFVIIVAFGFGGFGGGFSTGNQNNIAKINNTNISTQDFMD-Y 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
E G+ Q I ++ + +++L LVS LD IE++ L + +I
Sbjct: 60 LNESGLSQQVIKENID------KNIIEELLSTLVSTTLLDLEIEELNLSITEDVLIRKIK 113
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ FH ++ F ++ L + + + + GG + L++
Sbjct: 114 NNKNFHDENGLFQRTLYEKFLLTNNSSAAMFEIRLKNNELQKQLFTYISGGTKSPEFLIN 173
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ + + ++YI L+ + ++ + + E+ + +
Sbjct: 174 KFYKENNKKLDIEYIDLSTFYKKKEM-FTDNDIKFFVEENAEKLKQDY 220
Score = 40.6 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 41/483 (8%), Positives = 122/483 (25%), Gaps = 18/483 (3%)
Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
+ + K + ++ + + + ++ ++ +
Sbjct: 1 MINPFKNFSKKKIGGLLLIFVIIVAFGFGGFGGGFSTGNQNNIAKINNTNISTQDFMDYL 60
Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
+ S E N + E E+ +++ KN + +
Sbjct: 61 NESGLSQQVIKENIDKNIIEELLSTLVSTTLLDLEIEELNLSITEDVLIRKIKNNKNFHD 120
Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
L + + + K +L ++ +S +
Sbjct: 121 ENGLFQRTLYEKFLLTNNSSAAMFEIRLKNNELQKQLFTYISGGTK---------SPEFL 171
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
+ F + +E + + E +
Sbjct: 172 INKFYKENNKKLDIEYIDLSTFYKKKEMFTDNDIKFFVEENAEKLKQDYIDFSFVEISPK 231
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+ +++F + + +ID + + + I + +
Sbjct: 232 NLLGIDDFNQAFFDKIDDIENQISKNIDFKTIVKNLDISPTEVNSYINLDNKKIIENMIY 291
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ K + + D + + + + E + ++
Sbjct: 292 NSREDKIEILENNGAYIFYNINNSISKLPDLENPIIKEQITNLLFQKEKLEFNKNILEKI 351
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ + +F + GKN + + N+ K F + I ++S P+
Sbjct: 352 NKKTFNQ-VSFDEFGKNNIKEIKLDSI-----NDTKKFETNSIQILYSLPINSFTLIANN 405
Query: 567 NGLSYV---VFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
++ + + K S ++L S +L ++Y V V++ +
Sbjct: 406 ENDVFIAKTIKYEEKNINKNSANFGKISSEEGAQSKNNILKSYDLFLNNRYQVVVNEKTL 465
Query: 624 QRY 626
+R
Sbjct: 466 ERV 468
>gi|225848384|ref|YP_002728547.1| hypothetical protein SULAZ_0557 [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644127|gb|ACN99177.1| hypothetical protein SULAZ_0557 [Sulfurihydrogenibium azorense
Az-Fu1]
Length = 456
Score = 86.5 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/330 (11%), Positives = 113/330 (34%), Gaps = 16/330 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFIN 58
M I + + I L + F+ + + V +++P F
Sbjct: 1 MFTKI---AGSKWKNIVLYITAFAFVATSIVAVIIYKLSGEIYGAAEVNGREIPMYEFNY 57
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+++ + + + + K+ ++ L+ L Q E G+ A +V E
Sbjct: 58 TYEMIGRNLQNQDIDITPF----KKEIAKQAIETLIENELLYQEAEKEGIVATKEQVKEE 113
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ P F + KF + ++ + G+ + + K ++ ++ + + + S+
Sbjct: 114 LLNIPAFQV-NGKFDKNTYIQIINSLGLTPEGFESILQKQITVNNLRSILLSTLYVSDEE 172
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
++ + S + ++ + ++ ++ ++EK+K +Y E K++ D
Sbjct: 173 VETFTKKQLTRISGEVTLIKPKEP----TITDQMIKDYYEKHKSDYTVKEGKKVEIYKID 228
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+++ ++ + + K K + + VE++ E + + +
Sbjct: 229 INKLGQEKAEII--AKDLFTKAKTGNITNIPQEVEKIFDGEVYEDKKPENVPQDVLSLSK 286
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
+ +D K + +
Sbjct: 287 DKKVSFSKTNDGYYIGIYKGDVSQSKPFEE 316
>gi|300728349|ref|ZP_07061713.1| conserved hypothetical protein [Prevotella bryantii B14]
gi|299774385|gb|EFI71013.1| conserved hypothetical protein [Prevotella bryantii B14]
Length = 714
Score = 86.5 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 60/623 (9%), Positives = 167/623 (26%), Gaps = 35/623 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFINS 59
L IRK R + + F+ + S V V +K+ + F
Sbjct: 4 LGTIRK--RGVILICIIGFGLFAFIAEEAFRSCESSKNDQRQQVGEVLGEKISVTDFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ +I + G E + + + + V ++ +++GL G + +
Sbjct: 62 VDEYTEVIKMQQGTDNLPEE-QMNQVKDMVWNTYVQSKLVENEAKELGLTVTDGELQNIL 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
F + + S +
Sbjct: 121 NEGTNPMLLQTPFVNQ------QTGRFDASSLKKFLADYKSNQSAQNPQMAEQYQKIYNY 174
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+++ N I++P A + E + + + + +
Sbjct: 175 WTFIEKTLRQQTLAQKYQNLLAHCFISNPVEAKMAFKEENEESSIQLASFPYSDIQDAKI 234
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+E ++ +EL+A +++ E I + ++ + F +K +
Sbjct: 235 KVEESDMKAKYEELKARFKQAIESRDVKYIDVQVKASSSDRLALQKQFADFQKKLAAAED 294
Query: 300 AEE-QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
E KS + ++ + + G + V A+ +
Sbjct: 295 PTEILHKSGTSVNYLGIPVAKDAFPTDIAAQLDSMAVGSTSAV--------KANAQDNTL 346
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ + + + Q R + S E + + +
Sbjct: 347 NIIKLIAKQELPDSIQFRTIQVSGATPEAAHKTADSIYTALQGGAEFEALAKKYGQTGEK 406
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
+ + + + + + ++ +AL G+ + + +
Sbjct: 407 TWMTTKQYQFAPSMDKDTKTYISAL--NNAAVNSYENIALGQGNVILQVVDKKGMINKYT 464
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
+ + + T +K + V ++ G++ G ++ N +
Sbjct: 465 AAVIKKTIDF---SQDTYRAAYNKISSFVSA-NQNGEDLLKNAAKNGYTVQEANDMTTSL 520
Query: 539 NENKFF--GYDGISQVFSGP-VEMVKCFPIENGLSYVVFKVTNS------KVGPVQEKDK 589
+ D + VF E + + +V + + Q ++
Sbjct: 521 HYVANIHSTRDALKWVFDADEKEESPLYECGDNDHLLVMVLNKIHRAGYRDLSDPQVREM 580
Query: 590 FISYLTQMMNKDLLDSVIAYLKS 612
+ + + + + + + +KS
Sbjct: 581 VKAEVIKDKKAEQIIAKVKGVKS 603
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/344 (12%), Positives = 95/344 (27%), Gaps = 13/344 (3%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA-KKGDF 338
K AD + +L+ G +F LA++ G++ + + ++ P + + A
Sbjct: 377 HKTADSIYTALQGGAEFEALAKKYGQTGEKTWMTTKQYQFAPSMDKDTKTYISALNNAAV 436
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ + G + + ++ G
Sbjct: 437 NSYENIALGQGNVILQVVDKKGMINKYTAAVIKKTIDFSQDTYRAAYNKISSFVSANQNG 496
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ + + + + + VA I L VF D+
Sbjct: 497 EDLLKNAAKNGYTVQEANDMT-----TSLHYVANIHSTRDALKWVFDADEKEESPLYECG 551
Query: 459 PDGSYMWVQIKESIPARDR--KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
+ + + + + A R +V VK + K AE++ +K V +
Sbjct: 552 DNDHLLVMVLNKIHRAGYRDLSDPQVREMVKAEVIKDKKAEQIIAKVKG-VKSIAAAKAK 610
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
+ + I + V + P++ +F+V
Sbjct: 611 GAKVAPVNQVTFAAPVFIASVGASEPALS----GAVSATAKGKFVSHPVKGNAGVYLFQV 666
Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
TN PV+ +K + + + + L V +
Sbjct: 667 TNKTNRPVKFDEKAMEQKLRQRAMQYAGNFMNELYLNAKVVDNR 710
>gi|225023875|ref|ZP_03713067.1| hypothetical protein EIKCOROL_00741 [Eikenella corrodens ATCC
23834]
gi|224943349|gb|EEG24558.1| hypothetical protein EIKCOROL_00741 [Eikenella corrodens ATCC
23834]
Length = 513
Score = 86.5 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 81/511 (15%), Positives = 167/511 (32%), Gaps = 29/511 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M I+ K R ++++ L ++ V F+ +G + L S SS + +G +
Sbjct: 1 MFAIVEKHRR--LSQVLLGLITVTFVGFG-AQTLTSGMHSSYISKIGNTHITAEQVQELL 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL-EADHGRVWGEI 119
++ + + +LV A DQ ++G+ E ++ G I
Sbjct: 58 REA-------------PRHSDQPISKDDVYQSLVQQAYFDQGAAELGVGELSIEQIKGVI 104
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
R P F + +FS + F + L + GI E+ I+ R ++ + G S+
Sbjct: 105 TRDPSFQV-NGQFSPEQFQAYLRQRGITEERLIEEMRSQYRRQTLISLLSNGNIVSDSQA 163
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+Q R + N + P++A L +FE K Y P ++ ++ +V
Sbjct: 164 NQILALTGSERELRTAPFNAADFASKVQPTDAALRSYFEANKAKYALPLAVKLEFVDLNV 223
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ--LVFPNQKEADEAFQSLKKGKKFI 297
E K+ +S ELQ Y + + + ++ A ++
Sbjct: 224 EELAKQQTVSAQELQEAYSNLPTAASEAKPPFESVKAQLEESVRQRKAAQALGNAREQLA 283
Query: 298 QLAEEQGKSLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
QLA + SL + L E A + + + V
Sbjct: 284 QLAFDHPDSLQKVAQEMKLPLQKHEEWLSQPEAAAAKLPQAVQEAMFSAEVIERRHNSEV 343
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
++ + A +A E V++DY +E + + +
Sbjct: 344 LDMGNGVLRVLRATDVSKARNQSFEEAKEAVRKDYVAVESAKLAQAAAAQALSNLQA-GK 402
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD--HTVALPDGSYMWVQIKES 471
+ + ++ + Q + K + LP+G+ V+++
Sbjct: 403 AVDNLQWSNPEKASATQLQQAVGLQNFAAIVKAHPQNGKPGYAVITLPNGNAALVEVRAI 462
Query: 472 I--PARDRKLEEVLTDVKKDWKTVKTAEEVS 500
++L E+ V + +
Sbjct: 463 SLPENSKQQLPELRQQVAGRNTEAFYRQYLQ 493
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/272 (11%), Positives = 84/272 (30%), Gaps = 16/272 (5%)
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE-FLALGTSMDEISRREKIVSIDLPL 417
F+ VK + +R KA++ + ++L + S+ ++++ K+
Sbjct: 250 EAKPPFESVKAQLEESVRQRKAAQALGNAREQLAQLAFDHPDSLQKVAQEMKLPLQKHEE 309
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
A +P Q + + + +G ++ + AR++
Sbjct: 310 ----WLSQPEAAAAKLPQAVQEAMFSAEVIERRHNSEVLDMGNGVLRVLRATDVSKARNQ 365
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
EE V+KD+ V++A+ + A Q + + +
Sbjct: 366 SFEEAKEAVRKDYVAVESAKLAQAAAAQALSNLQAGK-------AVDNLQWSNPEKASAT 418
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIEN--GLSYVVFKVTNSKVGPVQEKD--KFISY 593
+ + + V + P + + + + +V + ++ +
Sbjct: 419 QLQQAVGLQNFAAIVKAHPQNGKPGYAVITLPNGNAALVEVRAISLPENSKQQLPELRQQ 478
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ + + L+ +Y + + R
Sbjct: 479 VAGRNTEAFYRQYLQVLQRKYPIQHGSQKLDR 510
>gi|124516328|gb|EAY57836.1| protein of unknown function [Leptospirillum rubarum]
Length = 238
Score = 86.5 bits (211), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 10/167 (5%)
Query: 1 MLEIIRK------ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54
MLE IRK + + + V WG S V + + +
Sbjct: 1 MLEWIRKVAVERPKVLGTLMILVGAIFVVSMGWWGFSAY--KSGKPGIVARINGTPLYAT 58
Query: 55 SFINSWKQELGMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
F ++ + + + + + +L N++ + L
Sbjct: 59 EFSRDYEIMKNNYQRLLLNGALGKKILTELNFPGLVLRNMIFRQLWIDEANHLHLIVPDA 118
Query: 114 RVWGEIARSPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKML 159
V E++R P F + FS ++ L + K++ + L
Sbjct: 119 VVVSEVSRIPFFQEGNPPVFSSKLYTQFLLETHQSAKDFEQSIREDL 165
>gi|149372555|ref|ZP_01891667.1| possible peptidyl-prolyl cis-trans isomerase [unidentified
eubacterium SCB49]
gi|149354598|gb|EDM43162.1| possible peptidyl-prolyl cis-trans isomerase [unidentified
eubacterium SCB49]
Length = 653
Score = 86.1 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 71/668 (10%), Positives = 182/668 (27%), Gaps = 85/668 (12%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L +L V + + S ++++ V + F+ +++ L ++ + V+
Sbjct: 8 ILFMLLVTLVA-------SAQKKSDVIMTIDGNPVYANEFVRVYQKNLELVQDESQKSVD 60
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
LD V + GL + E ++ ++ + D
Sbjct: 61 G-----------YLDLFVDYKLKVAEAYEQGLNNNDDY-RKEFSKYEEQLSRNYLY-EDK 107
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ LA+ +Y +L R+ + ++ N + + +
Sbjct: 108 VTTDLAKLAYERGKYDLKVAHILVRSSYDDVPQDTLKAYNKIKEALDKARSGEDFGTLAG 167
Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
+ A + F + I V + + ++ +
Sbjct: 168 TYSEEPGAAERGGDIGYFSTFTMVHQFEDMAYETPVGEISDIVRTQFGYHILKVEDKRER 227
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DISL 312
+ + F ++ +E LK+G F LA++ + + L
Sbjct: 228 SPDITVSHIMISDKDNAARTFDPEERINEVNTLLKQGSSFEDLAKQYSEDKNSGKKGGKL 287
Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--------------- 357
F K + + + + L GD + FG+ I +
Sbjct: 288 NRFGKGQLRSAAFEEVAYGLKNVGDVSEPFKTEFGWHIVRLDEKHTHQTFEEQKEMLEKK 347
Query: 358 ----PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
P + V + I + + + + + T + + +K +
Sbjct: 348 VGEGPRSKIVVMAVNEKIKEKYGFKGEDNFKPFFTEFVTDSIFNKTWDFDENFSQKDKML 407
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D+ ++ L + + D Y +++E+
Sbjct: 408 FEIGDDYTATYGDFASFIKQLQLDRGLPKNKSRIIADGYDMFETQELKKYFRTKLEETNE 467
Query: 474 ARDRKLEEVLT-----DVKKDWKTVKTAE----------------------------EVS 500
+ E DV + K +
Sbjct: 468 DYASVISEYRDGLLIFDVMRLNVWDKAKKDTIGSKAYYEAHKQNYNWKKRISADVISSSQ 527
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGA--SLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
++ GK ++I + L + + + +++ + + +E
Sbjct: 528 EDMIKVASTMLSNGKTIQEIKEALNQNDKISIIASSGKYEEDDQSLPENFV-------IE 580
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P E ++V+ V + V+ D+ + K + + L+ ++ V V
Sbjct: 581 KGVSKPYEQHGNFVIVNVKDIIPSRVKLYDEVKGGVISDYQKQVEKEWMESLRDKHKVEV 640
Query: 619 HDNLIQRY 626
+ + +
Sbjct: 641 NKKTLNKV 648
>gi|124003471|ref|ZP_01688320.1| ppic-type ppiase domain protein [Microscilla marina ATCC 23134]
gi|123991040|gb|EAY30492.1| ppic-type ppiase domain protein [Microscilla marina ATCC 23134]
Length = 693
Score = 86.1 bits (210), Expect = 2e-14, Method: Composition-based stats.
Identities = 69/600 (11%), Positives = 163/600 (27%), Gaps = 53/600 (8%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+ + F++ L + G TV + ++V + F N ++
Sbjct: 2 IALAIAAFILTDLFGKMLQGGGPESMTVGHIQGERVSYQGFNNRVSFVEAQYQRQ---GY 58
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ +++ + + E++G+ + + L ++
Sbjct: 59 PINDQTRNSIREQVWGDFIFEKAYQPQFEELGITVTPQEIKEILQGDSLMRDSQSQ---- 114
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
+ L+RT + +
Sbjct: 115 -------------------VIQQLTRTFKDSTGKYSPQMAGSYWTNIPAPQRNQLREGIR 155
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+ + +T+ K + + + + +++++ EL+A
Sbjct: 156 KDRLQKKYTSLLQFSTYITKAEAKRDYTNKNTKGDFKFLYVPYSSVADSTVKVTDAELEA 215
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
+ ++Y S E R+ L + S K Q A++ K+ +D +
Sbjct: 216 YMRDHADEYKSQETRS---LEYYALSIDPSPEDSTKFANLIRQTAKDFAKAENDSAFAVI 272
Query: 316 SKEYIPDVSLAD---------SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
+ + P+++ D KG ++ Y I +S+ K +
Sbjct: 273 NSDDPPNMNFQDPTKLPKEIWETVPTLTKGAVVGPLNNKNTYTIYKISDTKADTANYYAN 332
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
V + K SE+ K L + + + D
Sbjct: 333 VSNLLIKADSTMKQSEQDSARRKAEGILKKLLDNPGDFENQAN-----TYNTDGTKGKGG 387
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
+ + + D + V Y I + + KL +V T
Sbjct: 388 ALGWSNLKTFVKPFSEAIKGTDKIGVIPKVVKSAYGY---HIIKVVHPSTNKLYKVATIK 444
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF-- 544
K T +E ++LV + + KN T ++ +
Sbjct: 445 KTLLPGKSTIDEAFKTTDKLVNNSKTLEELRANAAKNPKLIKNTAPKLQPSATNLGSYQG 504
Query: 545 GYDGISQVFS--GPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
+ I F V + K + + Y++ +T + + LT + ++
Sbjct: 505 AREIIRWAFKDETKVGEIFKPVELSDQNVYIIAALTGATEKDELSVEANREALTNKVRQE 564
>gi|330996747|ref|ZP_08320619.1| hypothetical protein HMPREF9442_01706 [Paraprevotella xylaniphila
YIT 11841]
gi|329572469|gb|EGG54120.1| hypothetical protein HMPREF9442_01706 [Paraprevotella xylaniphila
YIT 11841]
Length = 716
Score = 85.7 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 67/616 (10%), Positives = 166/616 (26%), Gaps = 29/616 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L+ IR ++ + I + V F+ S S V + +++ F N
Sbjct: 4 LQKIR--AKGPLLVIVIGVALFAFIAEEAMRSIQSASNESKQQVGEIYGERISVHEFQNL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ ++ G +++ + L ++ + V+ ++ E++GL + I
Sbjct: 62 VDEYAEVVKFTSGNSALNDQ-QLTQLRDQVWNTYVNNKLIEHEAEELGLTVTDAEIQSII 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ F ++ A + + M +
Sbjct: 121 SEGNSPILMQTPFRNEQTGRFDANVLKKFLTDYEGMKTKSEQMPAEYMDYYNSLYKFWMF 180
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ ++L + +K RA E I +
Sbjct: 181 IEKTLRQESLAQKYQVLLGKAMLGNKI----------IDKAAFEARANESDIIMAAVPYS 230
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+K I++ +L+A+Y + KE++ + + K + +L K
Sbjct: 231 TINDKDIKVEESDLKAKYNELKERFKQTAESRDIKFIDVQVKASAADKAALDKDMAETAT 290
Query: 300 AEEQGKSLSD-ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
A G ++ + + Y P + + + + N
Sbjct: 291 ALAAGGDIAKIVRESGSTINYSPLPVSKNIFPNDIASQLDSMAVGQMKAPYYYAGDNTMN 350
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
V + D +I A + K + + + K +
Sbjct: 351 IIKVINKISAPDSIQLRQIQVAGADMNAIQKTADSIMTALHNGVAFDSIAKKYNQTGEKT 410
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
++ +G P L + + + Q+ + ++
Sbjct: 411 WITSRNYEGA-----PLDGDNLKFIKTITNMPVNATEKIDFAQGCIIAQVTDRRAMINKY 465
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
V +K + K + + + K+ G +L + +
Sbjct: 466 DVAV---IKCPIEFSKDTYAKAYNDFSHFIASNPTQKDIEAKALKNGYNLQERKDLFSNE 522
Query: 539 NENKFFG--YDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
+ + + +F+ + + +V +T + + Y
Sbjct: 523 HYVGGVSNTREAMRWIFNEDTEIGNVSPLYECGENDHMLVAILTGIHKDGYRTMEDMKEY 582
Query: 594 LTQMMNKDLLDSVIAY 609
LTQ + KD ++
Sbjct: 583 LTQEVIKDKKAEMLKE 598
Score = 61.0 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/350 (11%), Positives = 88/350 (25%), Gaps = 18/350 (5%)
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
+ QK AD +L G F +A++ ++ + S + E P
Sbjct: 376 MNAIQKTADSIMTALHNGVAFDSIAKKYNQTGEKTWITSRNYEGAPLDGDNLKFIKTITN 435
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
F ++ +V K D+
Sbjct: 436 MPVNATEKIDFAQGCIIAQVTDRRAMINKYDVAVIKCPIEFSKDTYAKAYNDFSHFIASN 495
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
++ + + + V + + + +F +D +
Sbjct: 496 PTQKDIEAKALKNGYNLQE-----RKDLFSNEHYVGGVSNTREAMRWIFNEDTEIGNVSP 550
Query: 456 VAL--PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ + + + R +E++ + ++ K AE + K Q
Sbjct: 551 LYECGENDHMLVAILTGIHKDGYRTMEDMKEYLTQEVIKDKKAEMLKEKLAQT------- 603
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNE---NKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
K+ D K GA T + + +S V S P +
Sbjct: 604 -KSIADAMKVQGAVSDTIKHVTFSASAFVMKTGSSEPMLSAVASKTAANQFAGPFKGNAG 662
Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+V N + K + +N + L + V +
Sbjct: 663 VYTLQVINKNKSAEKFDAKKEEAQQESLNMRAISRFANELYEKAEVKDNR 712
>gi|237756262|ref|ZP_04584821.1| hypothetical protein SULYE_0873 [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237691581|gb|EEP60630.1| hypothetical protein SULYE_0873 [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 460
Score = 85.7 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/226 (15%), Positives = 92/226 (40%), Gaps = 14/226 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFIN 58
M + I S++ I L + F+ + + + V V +++PF F
Sbjct: 1 MFDKI---SQSKWKNIVLFITVFAFVATSIVAIIVYKLSGEINGVAEVNGKEIPFYEFNY 57
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+++ + + + N + + K+++++L+ L Q E G+ A +V E
Sbjct: 58 AYEMTARNMQMQNLDISNLKD----QIKKEVVNDLIEKELLYQEAEKEGITATSEQVKNE 113
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I + F + KF +++ + G+ + + K LS ++ + + + S+
Sbjct: 114 ILKISAFQV-NGKFDKQIYLQIINSFGLTPDAFENILKKELSVNNLKTILLSTIYVSDEE 172
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
++ + S + V+ + + ++ +++E++K +Y
Sbjct: 173 IETFTKKQLTRVSGEATVIKPNTP----EITEEMIKKFYEEHKKDY 214
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/261 (7%), Positives = 77/261 (29%), Gaps = 6/261 (2%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ + + + + + +++ E
Sbjct: 200 EEMIKKFYEEHKKDYSAQTGKNITVYKIDIQKLGDDIAQQLAKQLFTQAKSGNLQSVPAE 259
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
V + + + ++ +L + ++ E L + +
Sbjct: 260 VEKVFEGDVFSNQEIQNLPKEVQEDANSLNKDKKVSFTKAQNEYYISLFNGESLKSIPYE 319
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK-FFGYDG 548
+ +++ + +Q L+ ++ + + K T + + K +
Sbjct: 320 QVKNEIKQKLERELSQKALQDMQKTTDITQLLKQNKTEKQTISDNTIQELVVKFGIKRED 379
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS----YLTQMMNKDLLD 604
++++ + V + PI ++FK+T K + D+ ++ D+
Sbjct: 380 LNKLANLKVGEI-SKPISTENGILIFKLTEIKEPDKSQVDETKKTILPFIKSQKFNDVYQ 438
Query: 605 SVIAYLKSQYSVTVHDNLIQR 625
+ L+ + + ++ +++
Sbjct: 439 MYVDSLRKKAKIKINKRVLEN 459
>gi|281419839|ref|ZP_06250838.1| peptidyl-prolyl cis-trans isomerase [Prevotella copri DSM 18205]
gi|281406139|gb|EFB36819.1| peptidyl-prolyl cis-trans isomerase [Prevotella copri DSM 18205]
Length = 716
Score = 85.3 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 54/629 (8%), Positives = 164/629 (26%), Gaps = 41/629 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL-------SDALFSVSGSSTVVSVGRQKVPFS 54
L IRK ++V + F ++ S + + V +K+
Sbjct: 4 LGTIRKRG-------VILVCIISFGLFAFIAEEAFRSCDSAKNNERQQIGEVLGEKISVQ 56
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
F + +I + G E + + + + + + + +GL
Sbjct: 57 DFQKLVDEYSEVIKMQQGQENLPEE-QMNQVKDMVWNTYIQNQIIAKEASKLGLTVTDAE 115
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
+ + + F + A +
Sbjct: 116 LQDILKTGTNPMLQQTPFVNQQTGRFDASSLQKFLADYKAQKAN----PSANAQMMDQYT 171
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
+++ +++P A + E + + +
Sbjct: 172 KIYNYWSFIEKTLRQQTLAQKYQALLAGCFLSNPVEAKMAFKEENEESQIQLAAFPYSDI 231
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
V E ++ DE++A +++ E + Q ++ ++ F
Sbjct: 232 QDDKVKISESDLKAKYDEIKARFKQPVESRDIKFVDIEVQASNADRAALNKEFAGYHSQL 291
Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
E + + + Y+ D+ + + +
Sbjct: 292 AAAADPTEVVRKSAS------TVAYLGIPVSKDAFPRDIAAQLDSMAV---GSTSAVKAN 342
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + K+++ + ++ + + ++ ++ + E I
Sbjct: 343 AGDNTLNIVKLVAKQELPDSVQYRVIQVAANSVAEAKTKADSIQGAIAGGADFEAIAKKY 402
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
D A K E A K+ F ++ + L G Y+ +Q+ +
Sbjct: 403 GQTGDKAWMTTKQYEYAQSMDKDNKTFINTLNTAAVNSLSQLQLGQG-YVVLQVLDRKAM 461
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ V +KK + + + + + ++ G + I
Sbjct: 462 VSKYTAAV---IKKPIDFSQGTYRTAYNKFSSFVSANPKSEDLLKNAAKEGYKVQDLKDI 518
Query: 535 NRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNS------KVGPVQ 585
+ + + +F + + + +V + +
Sbjct: 519 TTSVHYVANIHSTREALKWIFDSKEGEISPLYECGDNNHLLVVVLDKIHHIGYRDLNDAV 578
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
K+ + + + +++++ + +K+
Sbjct: 579 VKETVKAEVLKDKKAEMIEAKLNGVKNIA 607
Score = 62.6 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/253 (14%), Positives = 69/253 (27%), Gaps = 17/253 (6%)
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I + + Y + F++ +++ + + D VA I
Sbjct: 471 KKPIDFSQGTYRTAYNKFSSFVSANPKSEDLLKNAAKEGYKVQ--DLKDITTSVHYVANI 528
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE--VLTDVKKDWK 491
+ L +F + + + V + + R L + V VK +
Sbjct: 529 HSTREALKWIFDSKEGEISPLYECGDNNHLLVVVLDKIHHIGYRDLNDAVVKETVKAEVL 588
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE----NKFFGYD 547
K AE + +K G K G + + NQI
Sbjct: 589 KDKKAEMIEAKL---------NGVKNIAAAKAKGGKVSSVNQITFAAPVFIAATGASEPA 639
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
V ++ +F+VTN PV+ DK + + +
Sbjct: 640 LSGAVAGTKKGAFSAHAVKGNAGVYLFQVTNKANRPVKFDDKTYQQKCRQKAMQYAGNFM 699
Query: 608 AYLKSQYSVTVHD 620
L V +
Sbjct: 700 NELYLNAHVVDNR 712
>gi|332880502|ref|ZP_08448176.1| hypothetical protein HMPREF9074_03951 [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332681490|gb|EGJ54413.1| hypothetical protein HMPREF9074_03951 [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 716
Score = 85.3 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 65/616 (10%), Positives = 165/616 (26%), Gaps = 29/616 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L+ IR ++ + I + + F+ S S V + +++ F N
Sbjct: 4 LQKIR--AKGPLLVIVIGLALFAFIAEEAMRSIQSASNESKQQVGEIYGERISVHEFQNL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ ++ G +++ + L ++ + V+ ++ E++GL + I
Sbjct: 62 VDEYAEVVKFTSGNSALNDQ-QLTQLRDQVWNTYVNNKLIEHEAEELGLTVTDTEIQSII 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ F ++ A + + M +
Sbjct: 121 SEGNSPILMQTPFRNEQTGRFDANVLKKFLTDYEGMKTKSEQMPAEYMDYYNSLYKFWMF 180
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ ++L+ + +K R E I +
Sbjct: 181 IEKTLRQESLAQKYQVLLSKAMLGNKI----------IDKAAFEARTNESDIIMAAVPYS 230
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+K I++ +L+A+Y + KE++ + + K + +L K
Sbjct: 231 TINDKDIKVEESDLKAKYNELKERFKQTAESRDIKFIDVQVKASAADKAALDKDMAETAT 290
Query: 300 AEEQGKSLSD-ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
A G ++ + + Y P + + + + N
Sbjct: 291 ALAAGGDIAKIVRESGSTINYSPLPVSKNIFPNDIASQLDSMAVGQMKAPYYYAGDNTMN 350
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
V + D +I A + K + + K +
Sbjct: 351 IIKVINKISAPDSIQLRQIQVAGADMNAIQKTADSIMTALRGGVAFDSIAKKYNQTGEKT 410
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
++ +G P L + + + Q+ + ++
Sbjct: 411 WITSRNYEGA-----PLDGDNLKFIKTITNMPVNATEKIDFTQGCIIAQVTDRRAMINKY 465
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
V +K + K + + + K+ G +L + +
Sbjct: 466 DVAV---IKCPIEFSKDTYAKAYNDFSHFIASNPTQKDIEAKALKNGYNLQERKDLFNNE 522
Query: 539 NENKFFG--YDGISQVFSGPV---EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
+ + + +F+ + + +V +T + + Y
Sbjct: 523 HYVGGVSNTREAMRWIFNEDTEIGNVSPLYECGENDHMLVAILTGIHKEGYRTMEDMKEY 582
Query: 594 LTQMMNKDLLDSVIAY 609
LTQ + KD ++
Sbjct: 583 LTQEVIKDKKAEMLKE 598
Score = 63.0 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 56/547 (10%), Positives = 130/547 (23%), Gaps = 32/547 (5%)
Query: 93 LVSGATLDQF--IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ TL Q + + + +I F + N+ + + + +
Sbjct: 179 MFIEKTLRQESLAQKYQVLLSKAMLGNKIIDKAAFEARTNESDIIMAAVPYSTINDKDIK 238
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF------ENRSVDYIVLNNRHVPA 204
+ K +D + + +
Sbjct: 239 VEESDLKAKYNELKERFKQTAESRDIKFIDVQVKASAADKAALDKDMAETATALAAGGDI 298
Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
+ T + + S + + K + K K
Sbjct: 299 AKIVRESGSTINYSPLPVSKNIFPNDIASQLDSMAVGQMKAPYYYAGDNTMNIIKVINKI 358
Query: 265 FSPEIRTVEQL------VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
+P+ + Q+ + QK AD +L+ G F +A++ ++ + S + E
Sbjct: 359 SAPDSIQLRQIQVAGADMNAIQKTADSIMTALRGGVAFDSIAKKYNQTGEKTWITSRNYE 418
Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
P F ++ +V
Sbjct: 419 GAPLDGDNLKFIKTITNMPVNATEKIDFTQGCIIAQVTDRRAMINKYDVAVIKCPIEFSK 478
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
K D+ ++ + + + V + +
Sbjct: 479 DTYAKAYNDFSHFIASNPTQKDIEAKALKNGYNLQE-----RKDLFNNEHYVGGVSNTRE 533
Query: 439 LLFRVFGKDDPLSKDHTVAL--PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ +F +D + + + + + R +E++ + ++ K A
Sbjct: 534 AMRWIFNEDTEIGNVSPLYECGENDHMLVAILTGIHKEGYRTMEDMKEYLTQEVIKDKKA 593
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE---NKFFGYDGISQVF 553
E + K Q K+ D K GA T + + +S V
Sbjct: 594 EMLKEKLAQT--------KSIADAMKVQGAVSDTIKHVTFSASAFVMKTGSSEPMLSAVA 645
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
S P + +V N + K + +N + L +
Sbjct: 646 SKTAANQFAGPFKGNAGVYTLQVINKNKSAEKFDAKKEEAQQESLNMRAISRFANELYEK 705
Query: 614 YSVTVHD 620
V +
Sbjct: 706 AEVKDNR 712
>gi|332883586|gb|EGK03867.1| hypothetical protein HMPREF9456_01408 [Dysgonomonas mossii DSM
22836]
Length = 708
Score = 85.3 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 74/625 (11%), Positives = 183/625 (29%), Gaps = 47/625 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S + I L + + F++ + F +V + V + +
Sbjct: 4 LQKIRSKSSLLIGVIALGL--LAFVLPWSEISSFINKSKDKAFTVDGEVVTTRQYQDRIA 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE--- 118
Q G + + ++ + + + +V LD+ +GL +
Sbjct: 62 QWEHFQKIMSGQN-SLDENATLQIREMVYQQMVKEIILDKQAAQLGLNVTKEELNDMVTG 120
Query: 119 ------IARSPLFHG-KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
+ + P F + +F + ++ ++ + + F+
Sbjct: 121 PNVAPILHQIPFFVNPQTGQFERAALNQFIQTISQDDTNLPENQRAEIQARREIWTFI-- 178
Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
+ + V I P++ F+ K +
Sbjct: 179 --------------QNMMKYQRLEEKYSAIVAGIVIPTDTEAKSAFDDSKTQASISYVVQ 224
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
+ D + E+++ +++A Y++ K + + + +
Sbjct: 225 KYASIADSLVAK---EVTDKDIKALYDQRKNNFKLESELRK--ISYFVKDVVPSDEDYAA 279
Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
K+ + ++ + + L + + A +F
Sbjct: 280 VEKEINAIHDKFVATDNPGLLVNEYSNNQYVDAFISVNTLPADMKEFAQAATIGQVNGPE 339
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + + D I + + + L + +
Sbjct: 340 RNEQSYIMYKLVDRTSAADSVKLQMIPLPQGLDQATATHISDSLLNVIKGG---KDFSAL 396
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +L G E+A L+ + FG + ++ +G V++++
Sbjct: 397 ANELMPGSNGGNIGWATEMALAGAGGDLIKKCFGAAKGDVFNVSI---NGQTQIVRVEDK 453
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ ++ + KT V ++ NQ V E + +NF + G ++++
Sbjct: 454 TNPVAKVKIALIQ--MPVIVSDKTQNSVDNELNQFVAE-NGNVQNFDNAALTKGYNIISN 510
Query: 532 NQINRMDNENKFF--GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
++ D IS F+ V VK F ++ V N G +
Sbjct: 511 AVVSPSDMLLGQVAGSRQVISWAFNNKVGSVKKFDNLTNKR-IIAVVKNEISGDYMPVSE 569
Query: 590 FISYLTQMMNKD-LLDSVIAYLKSQ 613
+ L + D + +IA LK++
Sbjct: 570 VSAMLKAELINDKKAEKIIADLKAK 594
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 57/583 (9%), Positives = 144/583 (24%), Gaps = 31/583 (5%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI------ 106
F + + + + + + ++I + Q +E+
Sbjct: 138 TGQFERAALNQFIQTISQDDTNLPENQRAEIQARREIW-TFIQNMMKYQRLEEKYSAIVA 196
Query: 107 GLEA-DHGRVWGEI------ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
G+ A K + + + + I L
Sbjct: 197 GIVIPTDTEAKSAFDDSKTQASISYVVQKYASIADSLVAKEVTDKDIKALYDQRKNNFKL 256
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + A ++ +N + +N + +
Sbjct: 257 ESELRKISYFVKDVVPSDEDYAAVEKEINAIHDKFVATDNPGLLVNEYSNNQYVDAFISV 316
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
E+ + + I + + +L
Sbjct: 317 NTLPADMKEFAQAATIGQVNGPERNEQSYIMYKLVDRTSAADSVKLQMIPLPQGLDQATA 376
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
+D +K GK F LA E + ++G ++ +
Sbjct: 377 THISDSLLNVIKGGKDFSALANELMPGSNGGNIGWATEMALAGAGGDLIKKCFGAAKGDV 436
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
+ + I V + ++ + K V + +
Sbjct: 437 FNVSINGQTQIVRVEDKTNPVAKV--KIALIQMPVIVSDKTQNSVDNELNQFVAENGNVQ 494
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ D + + I +V + + Q++ F +
Sbjct: 495 NFDNAALTKGYNIISNAVVS-----PSDMLLGQVAGSRQVISWAFNNK--VGSVKKFDNL 547
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ +K I + EV +K + K AE++ + K +
Sbjct: 548 TNKRIIAVVKNEISGDYMPVSEVSAMLKAELINDKKAEKIIADLKA------KNLTSLDG 601
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS--GPVEMVKCFPIENGLSYVVFKVT 577
+ + + T N + N GY+ + V++ G V ++ YV+ +
Sbjct: 602 YAQAIAGRVDTVNFVTFQTNNISGVGYEPLLNVYAKHGQVNKLEAPKKGKSGVYVIDVTS 661
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
++ + + + Q L+ + LK + +V +
Sbjct: 662 KTENAATFDPAQSKQMIRQSNMYQLMSQAMLVLKEKMNVKDNR 704
>gi|255020576|ref|ZP_05292639.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase SurA) [Acidithiobacillus caldus ATCC 51756]
gi|254969961|gb|EET27460.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase SurA) [Acidithiobacillus caldus ATCC 51756]
Length = 479
Score = 85.3 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 20/182 (10%), Positives = 51/182 (28%), Gaps = 8/182 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + Q+ + E L +++L ++
Sbjct: 74 DKVVAVVNDDIITSLQLAQRVAAIRARLQQQDPNALPPEEV----LRRQVLQQMILQDVE 129
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G++ D + I + N + D LA++G + ++ D +
Sbjct: 130 LQIAKRAGIKVDQATLDQAIGNI----ARANNLTPDQLRQALAQQGQSWTQFEDDLRDRI 185
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ V + + L +P +P+ ++ +
Sbjct: 186 LVDRLTQQEVESRIHIGPDEVKTFARQLKELGGVSFDLQQIFIPLPDNPTPDAISAARRQ 245
Query: 220 YK 221
+
Sbjct: 246 AQ 247
>gi|307565549|ref|ZP_07628029.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
gi|307345708|gb|EFN91065.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
Length = 715
Score = 85.3 bits (208), Expect = 3e-14, Method: Composition-based stats.
Identities = 68/624 (10%), Positives = 171/624 (27%), Gaps = 33/624 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFINS 59
L IR S+ + I + + + FL+ + + + V + +K+ F
Sbjct: 4 LGKIR--SKGTLLMIVIGLALLGFLVEEGARSCSGLKNEQRSQVGEILGEKISNQDFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ I + N + ++ LVS L+ + +GL + +
Sbjct: 62 IDEYQSAIKLTMQRD-NLSEQELNQVKDQVWHQLVSNRVLEADAKKVGLTVTEQEIQNVL 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ LA+ ++ +L + L
Sbjct: 121 SDGTN--------------PALAQTPFVNQQTGRFDVNILKQFLDSYNKAKDTNSPQLEQ 166
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Q+ Y+ + S + + K E + L
Sbjct: 167 MQSIYNYWLFVEKNLRSQLLGQKYQSLLASCVLSNKVEAKLAFKDNNEEAQIQLATLPYS 226
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K+ I+IS+D+L+A+Y++ K + + + + + A L
Sbjct: 227 SVKDADIKISDDDLKAKYDELKGMFRQAVESRD--VKYVDVQIKASAADRRAIMNNMNSL 284
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+E + S+ S S IP + + S + + D I N + +
Sbjct: 285 QKELSTTTDVSSVVSKSGSIIPYLDVPVSSKAYQQYPDIASKIETLDVGTTGVTENTQDN 344
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + K+ + + V + + ++
Sbjct: 345 TLNVIRVLSKEQLPDSVEFRQIQVVANTPEESKVKADSIQKALAGGADFVTIAKRYGQTG 404
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+ +A + + + V++ E + +
Sbjct: 405 AKAWLTGQQYESAPSIGQDNRTFLLSLLKGEVNAIQNVALTQGNVIVEVLEKRAMTTKSV 464
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
V+ + +T +K ++ V + + + + G + I ++
Sbjct: 465 AAVIKKAIDF--SKETRGIAYNKFSEFVAKSTT-LADLQKNAGRYGYLVKDLKGITTAEH 521
Query: 540 ENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKV------GPVQEKDKF 590
D + +F + F + + +V + + K+
Sbjct: 522 YVAGIRGTRDALKWIFEAKQGDISPLFEVGDNDHMLVLVLNGIHEQGYRPWNDAEVKEIL 581
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQY 614
+ + ++L + + +KS
Sbjct: 582 KREVMKDKKAEVLMAKLKGVKSIA 605
>gi|167950936|ref|ZP_02538010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 331
Score = 84.9 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 58/317 (18%), Positives = 129/317 (40%), Gaps = 19/317 (5%)
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
+ + ++L ++ G+ L Q D+GL + I F + F ++
Sbjct: 1 MFDNTRMRAEVLQEMIRGSLLRQVSHDMGLRVGDQLIRSAILGIEAFQVDGH-FDKALYE 59
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
+ +G +E + + L + + + +++ R + R Y L
Sbjct: 60 RGVRLQGTSEAGFEQRVRQALLSEQLSQAVQNSVFATQREIEELIRLRNQTRDAAYFTLP 119
Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
+ + ++ +++ +++ + APE +I Y+L +++ + L+ YE
Sbjct: 120 VADFLSDEEIPIDLVESYYQSHQNEFLAPEQVKIEYLLLSAEAIAPTLDVQEEALRGYYE 179
Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQSLKKGKKFIQLA----EE 302
+ E Y PE R ++ ++ADEA Q ++ G+ F LA ++
Sbjct: 180 AHLESYGRPEQRRASHILVQVAQDADEATVAAAKEKIASLRQRVEAGEAFADLAKSESQD 239
Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
G + + LG F K + D + + K+G+ + + SFG+ + +S IK
Sbjct: 240 PGSAAAGGDLGFFGKGIM-DPAFESAT-FALKEGELSEAVRSSFGFHLIRLSEIKSGDVK 297
Query: 363 SFQEVKKDIANQMRITK 379
SF+E ++++ + R +
Sbjct: 298 SFEEARQEVESAYRKAE 314
>gi|261880635|ref|ZP_06007062.1| peptidyl-prolyl cis-trans isomerase [Prevotella bergensis DSM
17361]
gi|270332677|gb|EFA43463.1| peptidyl-prolyl cis-trans isomerase [Prevotella bergensis DSM
17361]
Length = 713
Score = 84.9 bits (207), Expect = 4e-14, Method: Composition-based stats.
Identities = 56/622 (9%), Positives = 152/622 (24%), Gaps = 52/622 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR SR + + + F+ S + + V K+ + F
Sbjct: 4 LGKIR--SRGITLIVIIGIGLFAFIAEEAFRSCESSRNNQRQQIGEVLGDKISYEEFAKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV---- 115
+ + +N + L ++ V ++ + +GL +
Sbjct: 62 VDESQEAMKLMGQDNLNDAQL--NQLRDQVWQGYVQYKIIENECDKLGLTVTDAEMQNVL 119
Query: 116 ----WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
+ +P + + +F + LA+ ++ + +
Sbjct: 120 NEGTNQMLLSTPFVNQQTGRFDANQLKQFLAQ--YKAQQNTNPQVAEQMQAIYKYWTFIE 177
Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
LL Q + + + + S L + ++ +
Sbjct: 178 KSLRQQLLIQKYNGLLAHCFLSNPIEAKKSFEDENQESQIQLAAYPYSSIEDSKVEIKDS 237
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
+ +K + + + +++ Y S +I QK+ + L
Sbjct: 238 ELKDKYSELKKRFQQYVESRDIK---------YVSVQINASAADRAALQKQFVGYAKELA 288
Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
+ ++ + + S I + G + + +
Sbjct: 289 EAADPSEVVRK---ATSSIPYLGIPVGKEAFPADIAQKIDSMSVGQTSSPVENKQDNTLN 345
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
V I + + +A ++ Y L + + +
Sbjct: 346 IVKLIAKQQLPDSVKFRAIQVGGTTPDEAHKRADSIYNALNAGADFAAIAKKYGQDGQEQ 405
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ +FA K + + ++ P L + +
Sbjct: 406 WMTTRQYEFAPSMDKDTKQYLYDLMTMGVNQMKSISLPQGNIIVQVLDRKNMINKYTAAV 465
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
I +E + + + ++ ++ G ++
Sbjct: 466 IKKTIDYSKETRGTIFNKFSS--------------FASANQTPEDIIKNAPKNGYNVQEA 511
Query: 532 NQINRMDNENKFF--GYDGISQVFSGPVEMVKCFP--IENGLSYVVFKVTNSKV------ 581
+ + D + +F V +NG + ++
Sbjct: 512 KDVTTAQHYLAGIRSTRDALKWLFDAKEGEVSQMYECGDNGNNLLIVICDKIHPVGYRGL 571
Query: 582 GPVQEKDKFISYLTQMMNKDLL 603
Q K+ + + D+L
Sbjct: 572 DDAQVKELVKQEVMRDKKADML 593
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/349 (12%), Positives = 90/349 (25%), Gaps = 22/349 (6%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF-SLAKKGDF 338
K AD + +L G F +A++ G+ + + + E+ P + +
Sbjct: 375 HKRADSIYNALNAGADFAAIAKKYGQDGQEQWMTTRQYEFAPSMDKDTKQYLYDLMTMGV 434
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ S V + ++ + + +
Sbjct: 435 NQMKSISLPQGNIIVQVLDRKNMINKYTAAVIKKTIDYSKETRGTIFNKFSSFASANQTP 494
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ + + + + V A + G I L +F +
Sbjct: 495 EDIIKNAPKNGYNVQEAKDVTTAQHYLAG-----IRSTRDALKWLFDAKEGEVSQMYECG 549
Query: 459 PDGS-YMWVQIKESIPARDR--KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
+G+ + V + P R +V VK++ K A+ + +KA
Sbjct: 550 DNGNNLLIVICDKIHPVGYRGLDDAQVKELVKQEVMRDKKADMLIAKAKTA--------- 600
Query: 516 NFRDIGKNLGASLLTTNQINRMDN----ENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571
N K GA + NQ+ V + P++
Sbjct: 601 NSIAAAKAKGAQVTEVNQVTFAAPVFIQTTGASEPALSGAVAATKQGAFSARPVKGQAGV 660
Query: 572 VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
F V + K + + + L + V +
Sbjct: 661 YQFLVMKRTKNAAKFDAKQQEQKLRQRAMQNAGNFMNELFIKAKVVDNR 709
>gi|294673596|ref|YP_003574212.1| peptidyl-prolyl cis-trans isomerase-like protein [Prevotella
ruminicola 23]
gi|294472759|gb|ADE82148.1| peptidyl-prolyl cis-trans isomerase-like protein [Prevotella
ruminicola 23]
Length = 711
Score = 84.9 bits (207), Expect = 4e-14, Method: Composition-based stats.
Identities = 59/606 (9%), Positives = 156/606 (25%), Gaps = 31/606 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IRK R + + F+ S + V K+ F
Sbjct: 4 LGKIRK--RGVALVCIIGLGLFAFIAEEAFRSCEATKNQQRQQIGEVLGNKINVQDFQAL 61
Query: 60 WKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ ++ + + E + ++ V+ + E +GL +
Sbjct: 62 VDEYQDVLKITQNRENFSEEEL--NQIKDQVWSQYVNEQIIANEAEKLGLTVTDEELQNI 119
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ + F + + +++D Y K S + + + +
Sbjct: 120 MKEGTNPMLMQSPFVNQ---QTGRFDVTMLTKFLDDYKKAGSNPQLAESYQTIYKYWQFI 176
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
Q + + + P A + + A + + D
Sbjct: 177 EKQLRTNTLAQKYQALLSNCLLSNPISAKMAFEGQNT-ESDIQLASIAYSSINDNDVKVD 235
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ + K + + + + E KY ++ K +A Q L+ G +
Sbjct: 236 DKDLKAKYDEEKEMFKQDVESRDIKYVDFQVVASAADRKELMKTMTDAAQKLQSGANAAE 295
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+A + + + + + Y S + G + V +F +
Sbjct: 296 VARKAQSQFAYTGMAATKRAY---PSDIAAKLDSMAVGQTSAVFETAF--------DNTL 344
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ + + + + R + E K+ + + +
Sbjct: 345 NVVKLIAKTQAPDSIEYRQIQVGGATVEAAKKTADSIYTALKAGADFEQLAQKYGQPGTK 404
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
+ + + + L + K+ + + +Q+ D+
Sbjct: 405 QWLTSAMYENSSSIDEESKTYLAAINNLAVNDVKNLEFTQGN---IILQVTARKAMVDKY 461
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
V +K K + + +K ++ G + + +
Sbjct: 462 DAAV---IKHTIDFSKQTYSEAYNKFSQFVSENKTIEDMEKNAAKFGFKVTPRQDLFNYE 518
Query: 539 NENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
+ + + +F V + N +V +T ++ L
Sbjct: 519 HNVANLRSTRETMKWIFDAKPGEVSPLYECGNNDHLLVVALTKINPVGYRDMSSLKDVLK 578
Query: 596 QMMNKD 601
+ +D
Sbjct: 579 AEVIRD 584
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/262 (11%), Positives = 71/262 (27%), Gaps = 16/262 (6%)
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
+ + I + + E Y + +F++ +++++ + +
Sbjct: 457 MVDKYDAAVIKHTIDFSKQTYSEAYNKFSQFVSENKTIEDM--EKNAAKFGFKVTPRQDL 514
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
VA + + + +F + + V + + P R + +
Sbjct: 515 FNYEHNVANLRSTRETMKWIFDAKPGEVSPLYECGNNDHLLVVALTKINPVGYRDMSSLK 574
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE--- 540
+K + K E++ +K G N K GA + NQI
Sbjct: 575 DVLKAEVIRDKKFEQIKAKL---------AGVNDLAAAKAKGARIDAVNQITFSAPVFVQ 625
Query: 541 -NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT-QMM 598
V + ++ +FKV + D + QM
Sbjct: 626 ATGASEPALAGAVAAAKAGEFSKHVVKGNGGAYLFKVVKKSNRAGAKFDAAQTEAQLQMQ 685
Query: 599 NKDLLDSVIAYLKSQYSVTVHD 620
+ L + V +
Sbjct: 686 ATQAARIFMQELYQKAGVVDNR 707
>gi|330814031|ref|YP_004358270.1| hypothetical SurA-like protein [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487126|gb|AEA81531.1| hypothetical SurA-like protein [Candidatus Pelagibacter sp.
IMCC9063]
Length = 462
Score = 84.9 bits (207), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/227 (16%), Positives = 86/227 (37%), Gaps = 9/227 (3%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
+V++ F WG+ D +FS ++ V V + + ++N + L + + N
Sbjct: 2 LIVIIIAVFASWGVGD-MFSAGKTNVVAEVSGKNIYSEDYVNELRNGLQTKNYQ-----N 55
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
A L +IL+ LV+ + + E+ + + + I P F K+ KFS
Sbjct: 56 VSDAIKDNLHIQILNQLVAEKIFEIYAEEEKIIINDKTLSNFIKDIPEF-SKNEKFSRTE 114
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ L + I+ + + K L + +V ++ + K ++ + S+ Y
Sbjct: 115 YEKYLLKNQISSFSFETSFKKNLLKKLIVESQNLDSISTSYHTTRVKDYFEKKISISY-- 172
Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+N + D + + + +K + + I + +
Sbjct: 173 INLEDLYEDVDITEKEILDYHKKKPSYSNELRSIKYAVINQNKEANQ 219
Score = 57.6 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 35/252 (13%), Positives = 90/252 (35%), Gaps = 10/252 (3%)
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
++S+ ++ +E + + D+I+ + + L + G + +
Sbjct: 218 NQSSDLFFKNISDIENMVLSNRTFDDIATQFSLNIKKSDLFNKDGVIKNSLKAT---AFD 274
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
+ + + + + + Y+ +K + +VKK+
Sbjct: 275 RSIIQKSFYLNDQITSELIEVKGSFYLI----GINEIVKKKPLILNDEVKKNIINKIKKT 330
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
++SKAN L+ + KE F + ++ + NR+ +NK F + I Q+F+
Sbjct: 331 NINSKANFLINKI-KEQNLFDQLISKKKKTVKQLDLKNRL-EKNKTFSPNQIQQIFNLKK 388
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF-ISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ + + E DK + ++ ++ S +L ++Y V
Sbjct: 389 NELLVVKGPKNYLIKAIDTSYDRTKSNDEMDKLYERQVAMNFDEQIMQSFDKFLNNKYKV 448
Query: 617 TVHDNLIQRYLD 628
++ ++ R +
Sbjct: 449 KINQKVLDRITN 460
>gi|260891097|ref|ZP_05902360.1| putative chaperone SurA [Leptotrichia hofstadii F0254]
gi|260859124|gb|EEX73624.1| putative chaperone SurA [Leptotrichia hofstadii F0254]
Length = 608
Score = 84.5 bits (206), Expect = 5e-14, Method: Composition-based stats.
Identities = 56/631 (8%), Positives = 172/631 (27%), Gaps = 45/631 (7%)
Query: 2 LEIIRKASRTW--VAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSS 55
+ + R + V+ + + + + LI G+ ++ +++ + +V K+
Sbjct: 1 MGLFRSHKKAIQIVSAVMIGIFGIAMLITGILFLKNNVFGAMNHREVIATVNGAKIYRDD 60
Query: 56 FINS---WKQELGMISQKIGFVVNSERARSVGLD--------KKILDNLVSGATLDQFIE 104
F K +L I+Q+ ++ + + + +L +++ L
Sbjct: 61 FDRESYGLKAQLSEINQQKIQQLSQVGVSAENIKNIPDNIINEYVLQLMINKEVLLSSAH 120
Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
++G++ + E + K ++ + F L G N + +
Sbjct: 121 NLGIKVSGAEINKEFNN----YQKQSQMNRKEFADHLRNRGYNITSFKKAIKDEKIIEKM 176
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS-NAVLTQWFEKYKDN 223
+ ++ + +A ++ + + + + +
Sbjct: 177 REKIFSNDKVTDEEIKKAYERNKYTQAFLNQDFEDVKEQIRENMTQDKNIMILKSYIAKA 236
Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
+ + ++ N + + E E+ + +T + +
Sbjct: 237 KEKTKIVFKNKDFEKIYASMTAAVAQNGDYKYTNEAVNEQLINLVSQTQQGYSDKAVNDL 296
Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
++ I + +D L + + + K +
Sbjct: 297 KATLKTNLDKFVKISNKAKAAGIKADPELTGVEQLRDYSQKYYNYLIDTYKPDEAALQAK 356
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
+ ++ N + + + D + +A + +K K A S D
Sbjct: 357 FNAKKDSYNIPNSIGGYVIGEEYQAGDGDFEAAKKQAQDIMKTTNKDNFAAKAKEFSKDP 416
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
S + A + + G +
Sbjct: 417 GSANNGGSLGET---------------ADLSQLVPEFANAVKSGKAGDIVGPIKTQFGYH 461
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ +S A + + +V + + + +++ K L E + + K
Sbjct: 462 IIY--IQSKDANNENVAKVSHILITPTISEASKQKIIKKVQDLKAEIESGKVTWSTVEKQ 519
Query: 524 LGASLLTTNQINRMDNENKFFG----YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+ +M + G + ++Q+F+ + + + Y + T+
Sbjct: 520 DKYKFSVKERFKKMVKSDAIPGIGKNDELMNQIFALKKDGI--LERNDASGYYLITKTSE 577
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
+ + + + D + L
Sbjct: 578 IPFTQATFENSKERVRLELAHEYADKELEIL 608
>gi|189499340|ref|YP_001958810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
phaeobacteroides BS1]
gi|189494781|gb|ACE03329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
phaeobacteroides BS1]
Length = 701
Score = 84.5 bits (206), Expect = 5e-14, Method: Composition-based stats.
Identities = 76/623 (12%), Positives = 154/623 (24%), Gaps = 70/623 (11%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
WG+ + FS G+ V V + + + + + + L +
Sbjct: 30 WGMDFSGFSGGGT-LAGKVNGTPVEYRQYEQVYDRLVDDFRSRS-PQAELTDGLERELRQ 87
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF--------SHDVFV- 138
+ D +V+ LD+ E + V + F +
Sbjct: 88 RAWDIVVNQIILDEQFEKYNIRVSDEEVLAAVESDNPPMVILQNFINPETGSIDREKLDS 147
Query: 139 -SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
D + L + G ++ S+ LD S + V
Sbjct: 148 SRMDPENRDVWLSIEDIIRRELMVNKLQGTLQAMVKVSDSELDALVERELGTFSASFAVF 207
Query: 198 NNRHVPAI--ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
V ++ + Q++E+ +D +R + + Y++F E+ EL +
Sbjct: 208 PYSAVGGDSLYSVADPEIKQYYEENRDLFRQEPTRSLEYVIFSAIPTERDSLTIKTELAS 267
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
E A+ K S
Sbjct: 268 LAEDFTLA-----------------------ADDSAFVSLQSDRADTYDKVYSRADFSVQ 304
Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
+ + + S + G I Y + V + +
Sbjct: 305 AGDDLFADSGLKA-------GALIGPIVDRSSYRMIKVQEVMKGD----TVARASHILIP 353
Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
KE E+ + S + + S D G A +P
Sbjct: 354 FSKGDVSGEKEARGLAEKIMQEIRSGKKFADLAMQYSQDPGSAANGGDLGWFSRTAMVPE 413
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
Q++FR V G ++ ++ + E V T
Sbjct: 414 FAQVVFRAATGTLAG----PVETQYGLHII-KVTGKDNSAIACSEIVRNIRPSG----AT 464
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK-FFGYDGISQVFS 554
E KA + +E ++G F + + TT + + + F+
Sbjct: 465 LENARRKAAEFQIEAEEKG--FDRATEIFEKTKNTTGPFTKTGVIPDIGYNNSIVKFAFN 522
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLT-QMMNKDLLDSVIA 608
+ ++V +V +D L + + L +
Sbjct: 523 ASKGAFSDIVQVD-AGFLVLRVAEINDSGFRSLDEGLQDMIRQELIVRKKGEALDGRLSL 581
Query: 609 YLKSQYSVTVHDNLIQRYLDGEK 631
LK + + G +
Sbjct: 582 LLKQKNG---DLEAVAAAFGGVQ 601
>gi|325270105|ref|ZP_08136712.1| peptidyl-prolyl cis-trans isomerase [Prevotella multiformis DSM
16608]
gi|324987406|gb|EGC19382.1| peptidyl-prolyl cis-trans isomerase [Prevotella multiformis DSM
16608]
Length = 715
Score = 84.5 bits (206), Expect = 5e-14, Method: Composition-based stats.
Identities = 66/619 (10%), Positives = 163/619 (26%), Gaps = 41/619 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFINS 59
L IR S+ + + + FL + + G + + +K+ +
Sbjct: 4 LGKIR--SKGGLLVTAIGLALFAFLAEEGFRSCNGIKGEARQQIGEILGEKISVQDYQKL 61
Query: 60 WKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ I ++ E + ++ LVS L E +GL +
Sbjct: 62 IDEYQSAIKFTMQRDNLSEEEL--NQVKDQVWQQLVSNRVLQADAEKVGLTVTEQEIQNV 119
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ LA+ ++ L + + L
Sbjct: 120 LNDGTN--------------PMLAQTPFVNQQTGRFDVNALKQFLDGYSKAKSEKSPQLD 165
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
Q Y+ + S + + K E + L
Sbjct: 166 QMQTVYDYWLFIEKNLRTQLLGQKYQALLASCVLSNKAEAKMAFKDNNEESQVQLASLSY 225
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
K+ I+I++ +L+A+Y++ K + + F + + K+
Sbjct: 226 SSVKDADIKITDADLKAKYDELKPAFRQNVETRD--IKFVDYQIKASTADRNAVVKEMNG 283
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
L ++ + + S S IP + + S + + D I N +
Sbjct: 284 LQKQLAAAADPAMVISKSGSEIPYLGVPVSSKAYRQYPDIASRIDSLAVGTTGVTENKQD 343
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ + + K + + + ++
Sbjct: 344 NTLNIIRVLSKAQLPDSVQFRQIQVAANTPDEARAKADSIQKALAGGADFEALAKRYGQT 403
Query: 419 D---FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ + + D +++ +A + + +Q+ +
Sbjct: 404 GEKVWFTGQQYESAPTMSQDNRTYINALLNGDVNATQNIALAQGN---VILQVLDKKAMT 460
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
+ V+ V K T +K ++ V + + + G + + N I+
Sbjct: 461 AKTTAAVIKKVIDFSKA--TRSVAYNKFSEFVAKNTTA-DDIEKNASKSGYRVQSLNDIS 517
Query: 536 RMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKV------GPVQE 586
++ D + +F V + + +V + Q
Sbjct: 518 TAEHYVAGIHGTRDALKWLFDAKQGDVSPLYECGDNDHLLVIVLNAIHPQGFRAWDDAQV 577
Query: 587 KDKFISYLTQMMNKDLLDS 605
K+ + + +LL +
Sbjct: 578 KEILKREVMKDKKAELLMA 596
>gi|119899176|ref|YP_934389.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
gi|119671589|emb|CAL95502.1| putative peptidyl-prolyl cis-trans isomerase [Azoarcus sp. BH72]
Length = 439
Score = 84.1 bits (205), Expect = 7e-14, Method: Composition-based stats.
Identities = 48/440 (10%), Positives = 116/440 (26%), Gaps = 64/440 (14%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+F+ ++ L + A+ V+ + V + + + Q + ++ G +
Sbjct: 11 LFVALVACSALALPVRAAVQPVAVDRIIAVVNNEVITAVQLRDRVDQTTRQLQRQ-GVQL 69
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
L++++L+ L+ Q D L D + I R ++NK +
Sbjct: 70 PPADV----LERQLLERLIVERAQLQLARDSSLRVDDATLERAIGRI----AENNKMNTT 121
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
+ L R+G+ + + + + + V +
Sbjct: 122 QLRAALERDGVAWDRFRNEIRTEILLSRLREREVDAKIVVTDAEVDNFLTSNPDAFSGEE 181
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+ + + + D + + IS +L
Sbjct: 182 FHVAHILLRAPEGATPEQIDRLRQRADTVINRLRNGEDFARVAADSSDAPDGISGGDLGW 241
Query: 256 EYEKNKEKY---------------------------------------FSPEIRTVEQLV 276
E ++
Sbjct: 242 RQRDRLPALYSDAVRDLRPGELSPLMRSAAGLHLVKLVDRRGGAAAGPQRLEQTRARHIL 301
Query: 277 FPNQKEADEAFQSLK----------KGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDV 323
+A + G F +LA+ LS LG +
Sbjct: 302 IKTSAVLSDAEAEARLLGLRERVVAGGADFGELAKASSADLSAAKGGDLGWVNPGDTV-P 360
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ ++ K G+ +P + FG+ + V + + + N +R KA E
Sbjct: 361 EFERA-MNVLKPGEVSPPVRSPFGWHLIQVLERRQQDVTD-ERKRMAARNILRERKAEEA 418
Query: 384 VKEDYKRLEEFLALGTSMDE 403
++ ++L + + ++
Sbjct: 419 YEDWVRQLRDSTYVEYRLEN 438
>gi|281425607|ref|ZP_06256520.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris F0302]
gi|281400194|gb|EFB31025.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris F0302]
Length = 713
Score = 84.1 bits (205), Expect = 7e-14, Method: Composition-based stats.
Identities = 63/623 (10%), Positives = 167/623 (26%), Gaps = 50/623 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR S+ + + F+ S + V V +K+ + F
Sbjct: 4 LGKIR--SKGAFLMGIIGLGIFAFIAEEAFRSCESTRNNARQQVGEVLGEKINVNEFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ +I + G ++ + + + + V ++ + +GL + +
Sbjct: 62 VDEYTEVIKMQQGAEALNDE-QLNQVKDMVWNTFVQTKIVEHEAKQLGLRVTDAELQNVL 120
Query: 120 A--------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
++P + + +F + LA + + + T
Sbjct: 121 KAGTNPMLLQTPFVNQQTGRFDANALQKFLAE--YDTQRSANPQMAQQYETIYKYWTFIE 178
Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
LL Q + + + V + SN L + + + +
Sbjct: 179 KTLRQQLLAQKYQSLLAHCLLSNPVEAKMAFKEENNESNIQLAAFPYSSIQDDKVQITES 238
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
+D + + + + +++ + + + + S +
Sbjct: 239 DLKAKYDELKPRFQQYVESRDIK------YVDFQVTPSAADKNALQKEFAGYAKDLASAE 292
Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
A + S LG S + G + VI + +
Sbjct: 293 DPS-----AVVRKSSSLVNYLG-IPVGKTAFPSDIAAKLDSMAVGHTSGVIENTMDNTLN 346
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ I E ++ A + + L G + ++++
Sbjct: 347 VIRLIAKQQLPDSIEYRQIQVGGASADVAH----KSADSIYAALKAGADFEAVAKKYGQT 402
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + + + + +K+ + + + VQ+
Sbjct: 403 GQKA----WMTTQQYQSAPSMDNDTKNYITSLNMMAVNETKNIVLPQGN---IIVQVLSR 455
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
D+ + V+ + +T + +K + V + ++ K G +
Sbjct: 456 KAMTDKYIAAVIKK--NIVFSNETYSKAYNKFSSFVSANQTGDEIIKNAAK-NGYRVQEA 512
Query: 532 NQINRMDNENKFF--GYDGISQVFSGPVEMVKC-FPIENGLSYVVFKVTNSKV------G 582
N I + D + +F V + + +V +T
Sbjct: 513 NDITTAQHYLANIHGTRDALKWLFEAKQGAVSQMYTCGDNDHLLVAVLTKIHPVGYRSLD 572
Query: 583 PVQEKDKFISYLTQMMNKDLLDS 605
Q K+ + + + ++L S
Sbjct: 573 DSQVKEMVKAEVMKDKKAEMLMS 595
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/347 (12%), Positives = 101/347 (29%), Gaps = 19/347 (5%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFSLAKK 335
K AD + +LK G F +A++ G++ + + + P D + ++
Sbjct: 376 HKSADSIYAALKAGADFEAVAKKYGQTGQKAWMTTQQYQSAPSMDNDTKNYITSLNMMAV 435
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
+ ++ ++ +S + +KK+I + K +
Sbjct: 436 NETKNIVLPQGNIIVQVLSRKAMTDKYIAAVIKKNIVFSN---ETYSKAYNKFSSFVSAN 492
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
G + + + + + + +A I L +F
Sbjct: 493 QTGDEIIKNAAKNGYRVQEANDIT-----TAQHYLANIHGTRDALKWLFEAKQGAVSQMY 547
Query: 456 VALPDGSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ + + + P R L++ V VK + K AE + SK N V +
Sbjct: 548 TCGDNDHLLVAVLTKIHPVGYRSLDDSQVKEMVKAEVMKDKKAEMLMSKLNG-VSTLAAA 606
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
+ + + V++ ++ +
Sbjct: 607 KAKGAKVADVNQVTFAAPVFVTLTGASEPALS----GAVYATAKGKFSTKAVKGNAGVYM 662
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
F+VTN + P + DK + + + + L V +
Sbjct: 663 FQVTNKTMRPGKFDDKTMEQKLRQKTMQYAGNFMNELYINAKVVDNR 709
>gi|260642857|ref|ZP_05417609.2| peptidyl-prolyl cis-trans isomerase [Bacteroides finegoldii DSM
17565]
gi|260620246|gb|EEX43117.1| peptidyl-prolyl cis-trans isomerase [Bacteroides finegoldii DSM
17565]
Length = 713
Score = 83.8 bits (204), Expect = 7e-14, Method: Composition-based stats.
Identities = 60/615 (9%), Positives = 162/615 (26%), Gaps = 48/615 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + + V V + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ ++ G ++ ++ + ++ + V+ +++ + +GL + +
Sbjct: 61 EYTEVVKLMRGVNALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSTAEIQDILKA 119
Query: 121 -------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
++P + + F D+ L + M M
Sbjct: 120 GVHPLLRQTPFQNPQTGNFDKDMLNKFL--------------------VEYAKMNESQMP 159
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
Y+ I + + + R +Y +
Sbjct: 160 TQYAEQYNNMYKYWSFIQKTLIQSRLAEKYQALVAKALLSNPVEAQDAFDARVNQYNVLL 219
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + I + EL+ Y K KE++ + + + + E +++K
Sbjct: 220 AGIPYSSVVDSTIVVKESELKELYNKKKEQFKQYQETRDIKYIDVQVTASPEDRAAIQKE 279
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+ S + + + Y +
Sbjct: 280 VDEATAQLATTTDDYTSFIRSVGSDVPYVDLFYNKTAFPSDVVARLDSASVGAVYGPYYN 339
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ K +A+ + + V++ K ++ ++ + + ++
Sbjct: 340 GADNTINSFKI-VAKAAVADSVEFRQIQVYVEDALKTKTLADSIYNAIKDGANFVELAKK 398
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D E A I + + +Q+
Sbjct: 399 YGQTGDSNWLTAAQYEGAQIDGDNLKFISAINNTGVNELVNLPMGQAN--VILQVTNKKA 456
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGASLLT 530
+D V + V+ ++E ++A ++ + + + G LL
Sbjct: 457 VKD------KYKVAVVKREVEFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRLLD 510
Query: 531 TNQINRMDNENKFF--GYDGISQVFSGPVEM--VKCFPIENGLSYVVFKVTNSKVGPVQE 586
+N ++ + + F + +V + + K +
Sbjct: 511 RADLNSSEHGIGGVRGTKEALRWAFDKAEPGEVSGLYECGESDHMMVVGLVSIKPEGYRS 570
Query: 587 KDKFISYLTQMMNKD 601
L + KD
Sbjct: 571 LKSVQDQLRAEIVKD 585
>gi|134093645|ref|YP_001098720.1| periplasmic peptidyl-prolyl cis-trans isomerase (PPIase), involved
in maturation of outer membrane proteins [Herminiimonas
arsenicoxydans]
gi|133737548|emb|CAL60591.1| Chaperone SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA)
(PPIase SurA) (Rotamase SurA) [Herminiimonas
arsenicoxydans]
Length = 469
Score = 83.8 bits (204), Expect = 9e-14, Method: Composition-based stats.
Identities = 62/515 (12%), Positives = 139/515 (26%), Gaps = 89/515 (17%)
Query: 4 IIRKASR-TWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--------TVVSVGRQKVPFS 54
IRK R + A I L ++ + + S S +V V + +
Sbjct: 9 SIRKLMRASKHALIVLGLMSGLMTNVTAQNMAPNASTSRLQPRLADAILVVVNNEVITRY 68
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
FI K + + G + E+ L +++L+ ++ Q ++ G++ D
Sbjct: 69 EFIERLKVIENRLKGQGGQMPPMEQ-----LQRQLLERMIVERAQLQQAKESGIKVDDAM 123
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
+ +AR N+ + F RL ++G+ ++ + + + V
Sbjct: 124 LDRAVARI----ADQNQLTMPEFRKRLEQDGMVYFQFREEIRSEMILQRLREREVDN--- 176
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
S+A + + ++ +
Sbjct: 177 ------------------------------KIQVSDAEVDAYMAEHSGTNANAPQELNLG 206
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
+ + Q + ++K A+E L G
Sbjct: 207 QILIRVPENATP---------------------------QQLADSRKRAEEVLAQLNAGG 239
Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +LA LG +++ +P D+ ++G P++ G+ I
Sbjct: 240 DFAKLAAAYSDGTDGLTGGELGWRTQDRLP-QLFVDATA-SLQQGQIAPLVKSGNGFHIL 297
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
V + + A + + ++ + E+ +R
Sbjct: 298 KVLGKRTQSVLRAAPGANPAAANTVKQTHASHILIKVNQVVSAADARRKLTELKQRLDNK 357
Query: 412 SIDLPLVDF-----AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + G P F P+ + Y +
Sbjct: 358 AATFEELARLHSNDFSASKGGDLGWIYPGDTVPEFERAMDALPVGEVSEPIESPFGYHLI 417
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+KE + + V++ + K E
Sbjct: 418 LVKERKSDDVSQERQ-RLVVRQALRAQKVEEATQD 451
>gi|261749602|ref|YP_003257288.1| peptidylprolyl cis-trans isomerase [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
gi|261497695|gb|ACX84145.1| peptidylprolyl cis-trans isomerase [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
Length = 710
Score = 83.4 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 70/624 (11%), Positives = 173/624 (27%), Gaps = 45/624 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
LE IRK W+ + ++ + F++ F SS V + + +++ ++
Sbjct: 4 LEKIRK--NPWILFFLIGIVMLAFILDPHVLFKFFAEKSSIFGKVNGENISIKEYVDCFQ 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
L + Q L K+ + L+ L+Q +G++ W I+R
Sbjct: 62 -FLKQLRQ---------EESDSHLKKETWNLLIHEKLLNQQAMKLGIQNTKKDFWDAISR 111
Query: 122 ------SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
P K F L + + +
Sbjct: 112 QSIYSYIPELQDKFGNLDLKKFQLYLKNLENASHVSHSQMEIEKNVWSYEKNSISKRILA 171
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
++ + + ++ +I + + + + Y +
Sbjct: 172 KKYVEMLMYGLNTSLIEGELNYKEKNFFSII----DYIFIPYSEIEHKYNIFLIGKNEIE 227
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
F K + L ++K + + ++ F+S K
Sbjct: 228 NFIKKHKFLYKRENLRSLSFAICRSKPSLEDEKNMKNK------MEKLFHKFKSTNKNYM 281
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F+ E+ + F + L + + K G I YV+A +
Sbjct: 282 FVLTKSEKPFDSN------FYLKNHLPPILQNFVVQNNKIGSMFGPIKEDNTYVMAKIIG 335
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
K K K EE + + + +
Sbjct: 336 KKMISDSVL----SSHILISHKEAIRSSNKRTKKEAEEIANKVYKILQKDPSKFEELVRK 391
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
D + + Y EQ F D +K + L + + + I+ +
Sbjct: 392 KSDDLINAKKNQGSLGWLKYNEQNSIGKFNIFDSENKKRMIGLTETQFGYHIIRIDDKSV 451
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK-EGKNFRDIGKNLGASLLTTNQI 534
+ + VK + KT + + S+ + + + F + + G + +
Sbjct: 452 PKPAYQFAVIVKTLIPSKKTEDRLYSRVRKFFGKNKNHKLNIFINNARKEGYETIFLKYV 511
Query: 535 NRMDNENKFFGYDGISQV-----FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
+ + ++ E + Y++ ++ + ++
Sbjct: 512 RSAQWDIDDLKTEVDKEIIDWSFDKNRKEGDCHIFSTSNKDYIIVFLSKIQKEGFS-MEE 570
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQ 613
+ L + K+ ++ +++ ++ +
Sbjct: 571 IKNNLIPFLKKEKINRLLSNMEKR 594
>gi|257092441|ref|YP_003166082.1| SurA domain-containing protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257044965|gb|ACV34153.1| SurA domain protein [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 436
Score = 83.4 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 45/134 (33%), Gaps = 9/134 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + L + ++ G + L++++L+ LV
Sbjct: 34 DRIVAVVNDEVITLHELRTRLDGALAQLQRQ-GTQLPPRDV----LERQMLERLVIDKVQ 88
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q D+G+ D ++ + R NK S F + L ++GI + + +
Sbjct: 89 LQQARDMGVRVDDAQLEQALQRIAA----GNKMSLAQFRAALEKDGIAFASFREEIRGEM 144
Query: 160 SRTDVVGMFVGGMR 173
+ V V
Sbjct: 145 TIARVREREVESKI 158
>gi|325281113|ref|YP_004253655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter
splanchnicus DSM 20712]
gi|324312922|gb|ADY33475.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter
splanchnicus DSM 20712]
Length = 708
Score = 83.4 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 72/705 (10%), Positives = 198/705 (28%), Gaps = 94/705 (13%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFINS 59
L+ IR + I + + + F++ ++ + S + + + + V F N
Sbjct: 4 LQTIRNR-GGLLVSIVIGLALIAFIVGDALNSGSRIFNSQRNQIGEIAGEGVSIIDFQNR 62
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ MI + + L + ++ + + ++IG++ ++ +
Sbjct: 63 VSKNEEMIKAMNNVS-SLNEEQQTMLRENTWQQMIMEQLMQREYDEIGIDVSGDELYDAL 121
Query: 120 ARSPLFHGKDNKFSHDV-----------FVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
+ F++ +V ++ N + +D M
Sbjct: 122 LGENMSPALRQLFTNPNTGEIDYAGARDYVKKVISAPNNIPQKAYWLNMEKEVSDSRKMA 181
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVD-------YIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ L + + + + + + SN + +++ K++
Sbjct: 182 KYNAIVAKALYITDAQAQEAAANSADKADISYIVKNYSTIEDSTINVSNGEIKEYYNKHQ 241
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK-------------EKYFSPE 268
++ PE ++I Y+ FD+ + + + ++ + +K
Sbjct: 242 KSFEQPESRKIVYVNFDIEPSGEDFSETEGAVNDLVKEFEESADPLEFVNLSSDKKADRN 301
Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
+++ + + + G A + + S L + ++ +
Sbjct: 302 YFKQDEIANDSMAQFLFNNEKAVFGPYLENNAYKISRVASVKMLPDSVRARHILIAPQNQ 361
Query: 329 IFSLAKKGDFT-----------------------PVIHGSFGYVIAHVSNIKPSFTVSFQ 365
++ AK + ++G + ++P +F
Sbjct: 362 DYAQAKNIADSLAGLLRKGADFEELAKTNSVDQNSAVNGGDLGWFTSRTMVQPFSDSAFF 421
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE-------------ISRREKIVS 412
K DI + A D + + + + T E +R I
Sbjct: 422 AKKNDIKVVLTQYGAHVLQVTDMAKPVKKIQIATVEKEVSPSAKTTNQIYNDARTFAIEV 481
Query: 413 IDLPLVDF-----------AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS-----KDHTV 456
+L + A K +A + +++ + + ++ T+
Sbjct: 482 SNLDNFNKKVEESGLTKRIATIGKNDKTIAGMESAREMIRQAYMAEEVDEVLKTNDGSTI 541
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
+ + E L +V ++K+ K A+ + + + ++
Sbjct: 542 FENGNKFTIAVLTEIDEEGIAPLNKVAGNIKRILIQKKKADLLKKE----LASAKSGSES 597
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDG-ISQVFSGPVEMVKCFPIENGLSYVVFK 575
I + G + N+I+ + G + + S + PI +
Sbjct: 598 LLSIARKAGLEVKEANEISFNSFQIPGAGIEPKVIAASSITEQGKISEPIAGNQGVYLIL 657
Query: 576 VTNSKVGP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
V N + L Q I + +
Sbjct: 658 VNNRTTEEVTPDMVAQGKQALQQSNMYRANYQAIQAILKNGEIVD 702
>gi|317503245|ref|ZP_07961302.1| peptidyl-prolyl cis-trans isomerase [Prevotella salivae DSM 15606]
gi|315665633|gb|EFV05243.1| peptidyl-prolyl cis-trans isomerase [Prevotella salivae DSM 15606]
Length = 713
Score = 83.4 bits (203), Expect = 1e-13, Method: Composition-based stats.
Identities = 54/620 (8%), Positives = 147/620 (23%), Gaps = 44/620 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR S+ + + + F+ S + V V +K+ + F
Sbjct: 4 LGKIR--SKGALLMGIIGLGLFAFIAEEAFRSCESTRNNERQQVGEVLGEKISVNDFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ + ++ + G ++ + + + + V +++ +++GL + +
Sbjct: 62 FDEYSEVVKMQQGADALNDE-QLNQVKDMVWNTFVQTKLIEKEAKELGLRVTDTEMQNVL 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
F + A D + +
Sbjct: 121 REGTNPMLLQTPFVNQQTGRFDANALQKFLAEYDAQRTANPQMAQQYETI-------YKY 173
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ + + +++P A + E + + + S V
Sbjct: 174 WTFIEKTLRQQLLAQKYQSLLAHCLLSNPVEAKMAFNEENQESQIQLAAFPYTSIQDDKV 233
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ ++ DEL+ + + E + ++ + F K +
Sbjct: 234 KISDSDLKAKYDELKPRFRQYVESRDIKYVDVQVTPSATDRSALQKDFAGYAKDLAAAED 293
Query: 300 AEEQGKSLSD-ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+ S ++ + + G + VI + + I
Sbjct: 294 PSTVVRKSSSLVNYLGLPVGKTAFPADIAAKLDSMAVGQTSGVIEDKLDNTLNVIRLISK 353
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ ++ A + Y L+ + + + +
Sbjct: 354 QQLPDSVQYRQIQVGGASAAAAHKSADSIYAALKAGADFEALAKKYGQTGQKAWMTTQQY 413
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD----GSYMWVQIKESIPA 474
A + + L Y+ IK++I
Sbjct: 414 QSAPSMDNDTKNYINNLNTMAVNETKNIPLSQGNIIVQVLDRKGMTEKYVAAVIKKNIVF 473
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ + +TA + G + +
Sbjct: 474 SNDTYSKAYNKFSSFVSANQTAA------------------DIEKNAAKSGYRVQEAKDV 515
Query: 535 NRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKV------GPVQ 585
+ D + +F V + + +V +T Q
Sbjct: 516 TTAQHYLANIHGTRDALKWLFDAKQGDVSPMYSCGDNDHLLVAILTKINPVGYRSLDDAQ 575
Query: 586 EKDKFISYLTQMMNKDLLDS 605
KD + + + ++L +
Sbjct: 576 VKDMVKAEVMKDKKAEMLMN 595
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 38/341 (11%), Positives = 90/341 (26%), Gaps = 21/341 (6%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA-----KKGDFTPV 341
+ +LK G F LA++ G++ + + + P + +
Sbjct: 383 YAALKAGADFEALAKKYGQTGQKAWMTTQQYQSAPSMDNDTKNYINNLNTMAVNETKNIP 442
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ V V+ K + + +KA + +
Sbjct: 443 LSQGNIIVQVLDRKGMTEKYVAAVIKKNIVFSNDTYSKAY----NKFSSFVSANQTAADI 498
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
++ + + + V +A I L +F +
Sbjct: 499 EKNAAKSGYRVQEAKDVT-----TAQHYLANIHGTRDALKWLFDAKQGDVSPMYSCGDND 553
Query: 462 SYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + + P R L++ V VK + K AE + +K V +
Sbjct: 554 HLLVAILTKINPVGYRSLDDAQVKDMVKAEVMKDKKAEMLMNKVKG-VNSLAAAKAKGAK 612
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+ + + + V++ P++ +F+V N
Sbjct: 613 VAEVNQVTFAAPVFVTLTGASEPALS----GAVYATAKGKFSTNPVKGNAGVYMFQVVNK 668
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ P + D + + + + L V +
Sbjct: 669 TMRPGKFDDNGMEQKIRQKIMQYAGNFMNELYINAKVVDNR 709
>gi|312797257|ref|YP_004030179.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI
454]
gi|312169032|emb|CBW76035.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia
rhizoxinica HKI 454]
Length = 512
Score = 83.0 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/422 (9%), Positives = 99/422 (23%), Gaps = 68/422 (16%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + Q+ + + ++ + ++L+ +V
Sbjct: 103 DRIVAVVNNDVITRRELDLRMGLITRRLQQQGAPLPSPDQLQL-----QVLNQMVLERIQ 157
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q ++ G+ D + +AR + N S D++ +RL EG+ + L
Sbjct: 158 LQRAKEDGIVVDDATLQHTLARL----AQANNMSLDMYRARLEAEGVPWSVFSADARNEL 213
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV----------------- 202
+ + V +
Sbjct: 214 LLSKLREKEVDSRITVSDAEVANYIASQRGPMQRVQQDLRFEHILIKAALNAPQTEIEAA 273
Query: 203 ----------------------PAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
P + + + S +
Sbjct: 274 RQKASELLKRALASENFARLAKDNSQAPDASKGGDLGFRSTSALPEAMTQAASQLRPGQV 333
Query: 241 EKEKKIEISNDEL-----QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK---- 291
E E+ + + ++ + E K
Sbjct: 334 NPEVLRTPEGFEIVRLVDRRVSSGMGSEAPRLVQTHARHILIRIGEGQPEPAARQKLVEL 393
Query: 292 -----KGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
G F A + LG S + + K G+ + I
Sbjct: 394 REQIEAGGDFANFAHTYSQDGSASQGGDLGWISPGETV-PEFERA-MNNLKDGEISQPIR 451
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
+GY + V + + S + ++ + KA + + ++L + + +D
Sbjct: 452 TEYGYHLIQVMGRREAQG-SVAQQQEIARQAIGQRKAEQAYADWLRQLRDSAYVQYKLDG 510
Query: 404 IS 405
+
Sbjct: 511 PA 512
>gi|299140828|ref|ZP_07033966.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris C735]
gi|298577794|gb|EFI49662.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris C735]
Length = 713
Score = 83.0 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 62/623 (9%), Positives = 167/623 (26%), Gaps = 50/623 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR S+ + + F+ S + V V +K+ + F
Sbjct: 4 LGKIR--SKGAFLMGIIGLGLFAFIAEEAFRSCESTRNNARQQVGEVLGEKINVNEFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ +I + G ++ + + + + V ++ + +GL + +
Sbjct: 62 VDEYTEVIKMQQGAEALNDE-QLNQVKDMVWNTFVQTKIVEHEAKQLGLRVTDAELQNVL 120
Query: 120 A--------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
++P + + +F + LA + + + T
Sbjct: 121 KAGTNPMLLQTPFVNQQTGRFDANALQKFLAE--YDTQRSANPQMAQQYETIYKYWTFIE 178
Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
LL Q + + + V + SN L + + + +
Sbjct: 179 KTLRQQLLAQKYQSLLAHCLLSNPVEAKMAFKEENNESNIQLAAFPYSSIQDDKVQITES 238
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
+D + + + + +++ + + + + S +
Sbjct: 239 DLKAKYDELKPRFQQYVESRDIK------YVDFQVTPSAADKNALQKEFAGYAKDLASAE 292
Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
A + S LG S + G + +I + +
Sbjct: 293 DPS-----AVVRKSSSLVNYLG-IPVGKTAFPSDIAAKLDSMAVGHTSGIIENTMDNTLN 346
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ I E ++ A + + L G + ++++
Sbjct: 347 VIRLIAKQQLPDSIEYRQIQVGGASADVAH----KSADSIYAALKAGADFEAVAKKYGQT 402
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + + + + +K+ + + + VQ+
Sbjct: 403 GQKA----WMTTQQYQNAPSMDNDTKNYITSLNMMAVNETKNIVLPQGN---IIVQVLSR 455
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
D+ + V+ + +T + +K + V ++ G + G +
Sbjct: 456 KAMTDKYIAAVIKK--NIVFSNETYSKAYNKFSSFVSA-NQTGDDIIKNAAKSGYRVQEA 512
Query: 532 NQINRMDNENKFF--GYDGISQVFSGPVEMVKC-FPIENGLSYVVFKVTNSKV------G 582
N I + D + +F V + + +V +T
Sbjct: 513 NDITTAQHYLANIHGTRDALKWLFEAKQGAVSQMYTCGDNDHLLVAVLTKIHPVGYRSLD 572
Query: 583 PVQEKDKFISYLTQMMNKDLLDS 605
Q K+ + + + ++L S
Sbjct: 573 DSQVKEMVKAEVMKDKKAEMLMS 595
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 44/347 (12%), Positives = 101/347 (29%), Gaps = 19/347 (5%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP----DVSLADSIFSLAKK 335
K AD + +LK G F +A++ G++ + + + P D + ++
Sbjct: 376 HKSADSIYAALKAGADFEAVAKKYGQTGQKAWMTTQQYQNAPSMDNDTKNYITSLNMMAV 435
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
+ ++ ++ +S + +KK+I + K +
Sbjct: 436 NETKNIVLPQGNIIVQVLSRKAMTDKYIAAVIKKNIVFSN---ETYSKAYNKFSSFVSAN 492
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
G + + + + + + +A I L +F
Sbjct: 493 QTGDDIIKNAAKSGYRVQEANDIT-----TAQHYLANIHGTRDALKWLFEAKQGAVSQMY 547
Query: 456 VALPDGSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ + + + P R L++ V VK + K AE + SK N V +
Sbjct: 548 TCGDNDHLLVAVLTKIHPVGYRSLDDSQVKEMVKAEVMKDKKAEMLMSKLNG-VSTLAAA 606
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
+ + + V++ ++ +
Sbjct: 607 KAKGAKVADVNQVTFAAPVFVTLTGASEPALS----GAVYATAKGKFSTKAVKGNAGVYM 662
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
F+VTN + P + DK + + + + L V +
Sbjct: 663 FQVTNKTMRPGKFDDKTMEQKLRQKTMQYAGNFMNELYINAKVVDNR 709
>gi|323344316|ref|ZP_08084542.1| peptidyl-prolyl cis-trans isomerase [Prevotella oralis ATCC 33269]
gi|323095045|gb|EFZ37620.1| peptidyl-prolyl cis-trans isomerase [Prevotella oralis ATCC 33269]
Length = 713
Score = 83.0 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/593 (8%), Positives = 146/593 (24%), Gaps = 44/593 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIW-GLSDALFSVSGS-STVVSVGRQKVPFSSFINS 59
L IR + + L + F++ G+ + + V + + F
Sbjct: 4 LGKIRG--KGTILITVLGIALFAFIVEEGVRTCESRQNEQRQQIGQVLGKNIDVQEFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ +I + G N + + + + V +++ E +GL + +
Sbjct: 62 VDEYTEVIKMQQGQN-NLNDEQLNQVKDMVWNTYVQTKIIEKEAEKLGLIVTDEELQNIL 120
Query: 120 A--------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
++P + + +F + LA ++ + T
Sbjct: 121 NQGTNPMLLQTPFVNQQTGRFDANALKKFLAD--YRSQQTTNSQLAEQYHTIYKYWSFVE 178
Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
+L Q + F + + + + S L + + +
Sbjct: 179 KTLRQQILSQKYQSLFAHCLLSNPIEAKMAFKDENEESRIELAAFPYSSIADDKVQVTDA 238
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
+D + + + + +++ Y E+ Q QK+ + L
Sbjct: 239 DLKAKYDELKARFRQYVESRDIK---------YVDIEVMPSSQDRAALQKDFTGYAKDLA 289
Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
+ ++ ++ LG + + G +
Sbjct: 290 AATDPSDVVKKSTSVIN--YLG-IPVAKTAFPADIAAHLDSMSVGQTYGPVEN------- 339
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + + + + Q R+ + + + + +
Sbjct: 340 -KQDNTLNLIKLVAKQQLPDSIQYRMIQVGGATVDAAHKTADSIYTALKGGADFEAIAKR 398
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + + + + ++ V + V K
Sbjct: 399 YGQTGEKTWITTAQYQNAPSMDKDTKTYISVLNTAAVNAIENIPVVQGNIILQVVDRKSI 458
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
IP +KK+ + + + ++ + + G +
Sbjct: 459 IPKYTA------AVIKKNIEFSRDTYSAAYNKFSSFASTNQTADDIVKNAQKNGYKVQEA 512
Query: 532 NQINRMDNENKFF--GYDGISQVFSGPVEMVKC-FPIENGLSYVVFKVTNSKV 581
+ + + + VF V F + ++ +
Sbjct: 513 KDLTTAIHYIAGIRGTREAVKWVFDADENDVSQMFECGDNNHLLIMVLDKIHP 565
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 43/352 (12%), Positives = 97/352 (27%), Gaps = 21/352 (5%)
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
V K AD + +LK G F +A+ G++ + + + P + +
Sbjct: 372 VDAAHKTADSIYTALKGGADFEAIAKRYGQTGEKTWITTAQYQNAPSMDKDTKTYISVLN 431
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK-ASEKVKEDYKRLEEF 394
I + + ++ + I + ++ +
Sbjct: 432 TAAVNAIENIPVVQGNIILQVVDRKSIIPKYTAAVIKKNIEFSRDTYSAAYNKFSSFAST 491
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
+ + +++ + + A + G I + + VF D+
Sbjct: 492 NQTADDIVKNAQKNGYKVQEAKDLTTAIHYIAG-----IRGTREAVKWVFDADENDVSQM 546
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
+ + + + + P R L + V VK + K AE++ +K
Sbjct: 547 FECGDNNHLLIMVLDKIHPVGYRSLNDPQVKEIVKTEVLKDKKAEQLMNKL--------- 597
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDN----ENKFFGYDGISQVFSGPVEMVKCFPIENG 568
G N K G + +Q+ V + P++
Sbjct: 598 NGVNSLASAKAKGGKVSPIDQVTFSAPVFVLSTGASEPALSGAVAATAKGRFSAKPVKGN 657
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+F+V N + DK + + + L V +
Sbjct: 658 AGVYLFQVVNKTDRKAKFDDKAEEQKLRQKALQYASNFMNELYINAKVVDNR 709
>gi|167950935|ref|ZP_02538009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 79
Score = 83.0 bits (202), Expect = 1e-13, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++ W+A ++++ +PF +WG+ + L V SV +++ +
Sbjct: 1 MLQAIRDKAQGWIAWAIVILISIPFALWGIQEYL-GAGAEPVVASVNDEEITERDLDQRF 59
Query: 61 KQELGMISQKIGFVV 75
+ +++G
Sbjct: 60 NTFRQQLRERLGAAY 74
>gi|269122654|ref|YP_003310831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sebaldella
termitidis ATCC 33386]
gi|268616532|gb|ACZ10900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sebaldella
termitidis ATCC 33386]
Length = 600
Score = 82.6 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 62/622 (9%), Positives = 167/622 (26%), Gaps = 39/622 (6%)
Query: 4 IIRKASRTWV-AKIFLVVLFVPFLIWGLSDALFSV----SGSSTVVSVGRQKVPFSSFIN 58
+RK + V + + + + + +++ + + + V K+
Sbjct: 2 ALRKFKKLMVPLSVLFIAAMLVPIFLKIGESIRAGKNIQQNNEVIAEVNGHKIHRLDLER 61
Query: 59 SWK------QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
++ + + G ++ + K IL LVS A L ED+ ++A
Sbjct: 62 GVAGVKNKIMQIKSMKAQQGIE-DNSEVPDDIIKKVILGELVSNALLVSSAEDLKIKASD 120
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
+ +I K F + NEKE + + + V+
Sbjct: 121 KEINDKINEIKAGVAKGESF----LNYLQSMGIANEKELKRMIKESIEVSRVLETQQKAH 176
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
+ S L + Y D + V ++ + +++ + ++
Sbjct: 177 KLSEEDLKKYYEMYRYTDFQDQTFEQA-----KPTIEDYVGKEYSDLIRNSLIEKQREKA 231
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
+ D K+ E+ + E KE + +V E E + +
Sbjct: 232 KIVFKDDEIKKLYEEMVRPIAEKEGYSFKEAL---MDTRILMMVVSTGTEYSEDLIAKVR 288
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
L + G + V + +
Sbjct: 289 ESIQKDLDNLVAVGKAAKEKGIKASPDFVGVDELRDLGKRYFVYLVDSYNPSDADLKKIY 348
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
++ +++ + + + + L ++ + E
Sbjct: 349 DADQGK------YDIRHSVGGYVVGDFFDPTEADKENTKKSAEELKKTLTPENFVETAKK 402
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ G + + + L + V GS++ E +
Sbjct: 403 VSEDPGSKDQGGELGWVDSNTNFVPEFLEAIKSAQKG-QIIGPVQTEFGSHIIY--VEDV 459
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ + ++V + + + +E+ + + L E ++ + D+
Sbjct: 460 DSANPDKKKVSHILLLPKPSEASRKELVDRLDTLKKELEEKKVTWTDVIDQDKYKYEVKE 519
Query: 533 QINRMDNENKFFGYDGISQV----FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
++ + G + + F+ V+ V + + Y + T + +
Sbjct: 520 VFKKIYENSAVPGIGFVEEANKKLFASKVDEVLSYEV--NGGYFLMVKTAEVPYKKRTFE 577
Query: 589 KFISYLTQMMNKDLLDSVIAYL 610
+ + + L
Sbjct: 578 EVKGQIRNEEALKYATQELDKL 599
Score = 50.6 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 42/459 (9%), Positives = 120/459 (26%), Gaps = 36/459 (7%)
Query: 50 KVPFSSFINSWKQEL-GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
K+ ++ + VG + +L+ + +++ E +
Sbjct: 177 KLSEEDLKKYYEMYRYTDFQDQTFEQAKPTIEDYVGKEY---SDLIRNSLIEKQREKAKI 233
Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
+ + +S + + L T ++ M
Sbjct: 234 VFKDDEIKKLYEEMVRPIAEKEGYS---------------------FKEALMDTRILMMV 272
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
V + L R + + + + S + +
Sbjct: 273 VSTGTEYSEDLIAKVRESIQKDLDNLVAVGKAAKEKGIKASPDFVGVDELRDLGKRYFVY 332
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+K + +++ F ++ + +E +
Sbjct: 333 LVDSYNPSDADLKKIYDADQGKYDIRHSVGGYVVGDFFDPTEADKENTKKSAEELKKTLT 392
Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
+ +++E+ G LG ++I S K G + FG
Sbjct: 393 PENFVETAKKVSEDPGSKDQGGELGWVDSNTNFVPEFLEAIKSAQK-GQIIGPVQTEFGS 451
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
I +V ++ + + + + E V +E + ++ ++
Sbjct: 452 HIIYVEDVDSANPDKKKVSHILLLPKPSEASRKELVDRLDTLKKELEEKKVTWTDVIDQD 511
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
K + ++ + + + LF + + +G Y +
Sbjct: 512 KYKYEVKEVFKKIYENSAVPGIGFVEEANKKLFASKVDEVLSYEV------NGGYFLMVK 565
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
+P + R EEV + + + + + + ++L+
Sbjct: 566 TAEVPYKKRTFEEVKGQI----RNEEALKYATQELDKLL 600
>gi|91776502|ref|YP_546258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
flagellatus KT]
gi|122070650|sp|Q1GZC0|SURA_METFK RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|91710489|gb|ABE50417.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
flagellatus KT]
Length = 437
Score = 82.6 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/435 (10%), Positives = 122/435 (28%), Gaps = 62/435 (14%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
++ + F + A V V + + + + + + ++ G +
Sbjct: 13 GLIALFFFFSISAMAAEVAKMDRIVAIVDQGVITEKELEDRIQTVIAQLEKQ-GTQLPPR 71
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
L K+IL+ L++ Q+ GL D ++ I R + NK S F
Sbjct: 72 DV----LQKQILERLINDRLQLQYAAQTGLRVDDAQLDKTIERI----AEQNKLSTGEFR 123
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPSNLLLDQAKRFYFENRSVDYIV 196
L EGI +++ + + + V + + + N D
Sbjct: 124 KALEAEGIPYRKFREDIRNEIILARLREREVDNRVNVTESEIDNFLTTQSSRNDIQDEFE 183
Query: 197 LNNRHVPAIADPSNAVLTQWFEKYK----------------------------------- 221
+ + + A + + L + K +
Sbjct: 184 VAHILIRAPEESTPEELQKLKAKAEAALKELQSGADFAQVSAGYSDAPNALEGGILGWKA 243
Query: 222 -DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF--- 277
+ + + + L+ + + V ++
Sbjct: 244 SSQLPSLFVDALQALQPGQLSPVLRSPNGYHILKLLNRRGGSSPLVVDQTHVRHILIKLS 303
Query: 278 ------PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADS 328
+++ + + L G F +LA + + + LG + +
Sbjct: 304 EVVSELEAEQKINSIKERLDHGADFAELARQYSEDASANNGGDLGWTNAGDTVPA--FEK 361
Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
+ + + + FG+ I V + + + ++R KA + ++
Sbjct: 362 AMNALDINEISAPVRTPFGWHIIQVLERRKQDMTQ-ESARLKARQEIRARKADDAFQDWL 420
Query: 389 KRLEEFLALGTSMDE 403
L + + +++
Sbjct: 421 SELRDRAYVEYRLED 435
>gi|225677192|ref|ZP_03788188.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Muscidifurax uniraptor]
gi|225590779|gb|EEH12010.1| peptidyl-prolyl cis-trans isomerse D, putative [Wolbachia
endosymbiont of Muscidifurax uniraptor]
Length = 120
Score = 82.6 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 5/122 (4%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + K+ +V+L + G+ + L V VG++ + + + ++ I
Sbjct: 2 NVKNFFTKVTVVLLACLLIFMGIGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYEKQI 61
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
S G + E+ + L +L+ L+ L ++GL I + F
Sbjct: 62 S---GSDASREQVKK--LKYDLLNALIEQKLLFNLTSELGLTVGEESTKNHIKNTKYFQN 116
Query: 128 KD 129
Sbjct: 117 DK 118
>gi|239906716|ref|YP_002953457.1| putative peptidyl-prolyl cis-trans isomerase [Desulfovibrio
magneticus RS-1]
gi|239796582|dbj|BAH75571.1| putative peptidyl-prolyl cis-trans isomerase [Desulfovibrio
magneticus RS-1]
Length = 371
Score = 82.6 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/175 (15%), Positives = 58/175 (33%), Gaps = 10/175 (5%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+AK F V+ + L A V V + + + Q G
Sbjct: 45 IAKFFGVLALLASLATPAGAAELV---DRVVAVVNGKLITLFDVNTRVADMV---KQTQG 98
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ + R L +++L+++++ ++ + + + +I K N
Sbjct: 99 VALKPDDPRLDDLRRQVLESMITDMLIESEANKLKVTVSDTEIDSQIEEIK----KKNNL 154
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
S FV+ LA+EG+ K++ D + ++G V +
Sbjct: 155 SQQQFVTELAKEGLTLKQFRDKMRLDSIKKRLLGFMVHRKVLVTDDEIRDYYEKN 209
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 15/134 (11%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+A +L + +F D K + D + K S + + P
Sbjct: 236 KKQAEELRDRINSGSMSFADAAKKFSIGPGRDQGGDLGDVQIKDLAPPLRSALTAVPPGQ 295
Query: 560 VKCFPIENGLSYVVFKVT---------------NSKVGPVQEKDKFISYLTQMMNKDLLD 604
V + +G + ++ + T S K++ L + L
Sbjct: 296 VSEPVLLDGKAVLLVQRTASAPAEKPAAPAAAAGSNPSYEAAKEQIQELLYKQKFDKLFQ 355
Query: 605 SVIAYLKSQYSVTV 618
I L+S+ V V
Sbjct: 356 EYIDNLRSKAVVEV 369
>gi|269792688|ref|YP_003317592.1| hypothetical protein Taci_1078 [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100323|gb|ACZ19310.1| hypothetical protein Taci_1078 [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 340
Score = 82.6 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/185 (14%), Positives = 67/185 (36%), Gaps = 12/185 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINS 59
M++ +R + + + +V + F +G+ SG V + +K+ S
Sbjct: 2 MMQYLRNNVKGIMIGVVVVFIVSCFAGYGMYVRGRGSSGGDYPVAKLDGKKIMRSQVEMR 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
++ ++++ G V S + + ILD++V G L + + G++ V +
Sbjct: 62 LRE----VAEQFGDRVTSGDVPM--IRRMILDDIVVGMELTKAAKAEGIKVAKEEVDQYL 115
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
A + + + L R G+ E+E + ++ ++ +
Sbjct: 116 ASMQAQFP-----TKEAYDEYLKRSGMTERELRRKVEENIAVGKLMEKVTASASVDAGEV 170
Query: 180 DQAKR 184
+
Sbjct: 171 RKFYD 175
>gi|91200985|emb|CAJ74042.1| hypothetical protein kuste3282 [Candidatus Kuenenia
stuttgartiensis]
Length = 582
Score = 82.6 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 67/629 (10%), Positives = 156/629 (24%), Gaps = 90/629 (14%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI +++ +WG+S + + + V +K+ F + + +
Sbjct: 12 KIVYIIMIFAVSVWGISFSAMELIPKKPIAKVLGRKITQDEFTEMAIRWQRLFFPQTQES 71
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ + + + +GL V + R F
Sbjct: 72 IIP----------IVWKQF----LMVEKANQMGLMITSPEVEDGLRRI-AFQVFGQTPEL 116
Query: 135 DV---FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + + L + + + ++ L E
Sbjct: 117 EKRRLMQFLCNTFKLTPDQIQRTIREALLVEKLESLLRSSTKVTSEELWYRFSLENEQVK 176
Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
+ + L + L ++ KYK+ + K + + D
Sbjct: 177 LKIMALKASDFADTVQVNEEELIAFYNKYKNKEYDAH-SGTPGYMLPEMVKIECLIAKFD 235
Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
++QA + KE E + E
Sbjct: 236 DMQALVDVTKEDIKKYYEDNKETQYKIDPAEITT-------------------------- 269
Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
+ +P+ K+ D + V E++K +
Sbjct: 270 ----EESSVPEDKTETMSEGDTKEKDLSHVYKSYDAVK---------------DEIRKIL 310
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV--KGKE 429
A QM KASE + + + + + + K K +
Sbjct: 311 AGQMAREKASEVIHKVDEEIYATIDKEDRPNFSDLAVKYKLTRTIPAGKESKREFLAESD 370
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
+ I + +V + + +G ++ Q+ + EE+ V +D
Sbjct: 371 LWEIFPGSDKISKVAFDREKFEPSMPLEFVEG-FVIFQVIDKKYPAPAPFEEIKNKVLRD 429
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ--------------IN 535
K ++ A + S F DI K + + +
Sbjct: 430 ITIEKGLQKSIEIAEKY-TSGSNSATAFEDIVKLIAGEYSQKDFLVCETDYIKRPMKLFD 488
Query: 536 RMDNENKFFG---YDGISQVFSGPVEMVK-CFPIENGLSYVVFKVTNSKVGP----VQEK 587
R + + ++ F V + + + V K + +
Sbjct: 489 RDSRYIEALDADRPNLTNKAFELKPGEVAFAVETLDEKACYIISVIERKPADTALFEKTR 548
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ + + L + A + Q +
Sbjct: 549 ENVMKRFLYEKQEAFLTAWKADMNKQMEI 577
>gi|302346446|ref|YP_003814744.1| hypothetical protein HMPREF0659_A6700 [Prevotella melaninogenica
ATCC 25845]
gi|302150324|gb|ADK96585.1| conserved hypothetical protein [Prevotella melaninogenica ATCC
25845]
Length = 715
Score = 82.6 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 59/592 (9%), Positives = 157/592 (26%), Gaps = 41/592 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-----VSGSSTVVSVGRQKVPFSSF 56
L IR I + + + + DA S + + +K+ +
Sbjct: 4 LGKIRSK-----GGILVGAIGLALFAFLAGDAARSCDGIKGEARQQIGEILGKKISVQDY 58
Query: 57 INSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ I + + + ++ ++ LVS ++ E +GL +
Sbjct: 59 QKLIDEYQSAIKFTMQRDNLTDQELK--QVEDQVWQQLVSNRVIEADAEKVGLTVTEKEI 116
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
+ L + ++ L + +
Sbjct: 117 QNVLNEGTN--------------PMLVQTPFVNQQTGRFDVNALKQFFDSYNKAKAAKSP 162
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ Q Y+ + S + + K E +
Sbjct: 163 QVEQMQPIYDYWLFVEKNLRAQLLGQKYQALLASCVLSNKAEAKMAFKDNNEESQIQLAS 222
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
L K+ +++++D+L+A+Y + K + + F + + A + K+
Sbjct: 223 LAYSTVKDADVKVTDDDLKAKYAELKPAFRQNVETRD--IKFVDFQIKASAADRSQVVKE 280
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
++ + ++ S S IP + L S + + D I V N
Sbjct: 281 MNDFQKQLASAADPAAVVSKSGSEIPYLGLPVSNKAYQQYPDIASKIDSLSVGTTGVVEN 340
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ + + + K + ++
Sbjct: 341 AQDNTLNIIRVLSKAQLADSIQFRQINIAAATPDEARAKADSIQKALAGGADFDALAKRY 400
Query: 416 PLVD---FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ + + + + +++ + + + +Q+ +
Sbjct: 401 GQTGEKVWFTGQQYEMAPSMNQDNRTFINALLNGEVNATQNLALTQGN---IILQVLDKK 457
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+ V+ V K ++ +K ++ V + S + G + + N
Sbjct: 458 AFTTKTTAAVIKKVVDFSKATRSN--AYNKFSEFVAKSSTV-ADLEKNAPKSGYQVQSLN 514
Query: 533 QINRMDNENKFFG--YDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKV 581
I+ ++ +D + +F V + N +V +T
Sbjct: 515 DISTAEHYVGGIPGTHDALKWLFEAKQGEVSPLYECGNNDHLLVIALTAVHP 566
Score = 67.2 bits (161), Expect = 9e-09, Method: Composition-based stats.
Identities = 46/347 (13%), Positives = 98/347 (28%), Gaps = 22/347 (6%)
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK-KGDFTP 340
+AD ++L G F LA+ G++ + E P ++ + F A G+
Sbjct: 379 KADSIQKALAGGADFDALAKRYGQTGEKVWFTGQQYEMAPSMNQDNRTFINALLNGEVNA 438
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
+ + + + + + +
Sbjct: 439 TQNLALTQGNIILQVLDKKAFTTKTTAAVIKKVVDFSKATRSNAYNKFSEFVAKSSTVAD 498
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+++ + + L + A V G IP L +F +
Sbjct: 499 LEKNAPKSGYQVQSLNDISTAEHYVGG-----IPGTHDALKWLFEAKQGEVSPLYECGNN 553
Query: 461 GSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ + + P R ++ V +K++ K AE++ +K G N
Sbjct: 554 DHLLVIALTAVHPQGYRSWDDAQVKEILKREVIKDKKAEKLMAKLK---------GVNSI 604
Query: 519 DIGKNLGASLLTTNQINRMDNE----NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+ GA + + NQI V P++ VF
Sbjct: 605 AAAQAKGAKVSSVNQITFAAPAFVQATGSVEPALSGAVAGTAAGKFSKAPVKGNAGVYVF 664
Query: 575 KVTNSKVGPVQEKDK-FISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+V + + D+ + N L+ + + L + V +
Sbjct: 665 QVVKKSMRAGSKYDETLVMQQAAQANMQLVGNFMQDLILKAKVVDNR 711
>gi|150025240|ref|YP_001296066.1| peptidyl-prolyl cis-trans isomerase precursor [Flavobacterium
psychrophilum JIP02/86]
gi|149771781|emb|CAL43255.1| Probable peptidyl-prolyl cis-trans isomerase precursor
[Flavobacterium psychrophilum JIP02/86]
Length = 658
Score = 82.6 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 79/657 (12%), Positives = 191/657 (29%), Gaps = 63/657 (9%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ F + S A + ++ + F + + + ++ + +N
Sbjct: 6 IIACFALAINSLAFAQSDKKEVLFTIDDKPYYTDEFSRVYNKNIDLVKDESQKDLN---- 61
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG------EIARSPLFHGKDNKFSH 134
K ++ V IGL+ + + +++++ K K
Sbjct: 62 -------KYMELFVGYKLKINKANKIGLQNNEKYINELKSYRTQLSKNYTSDTKVTKALI 114
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ +R +E I + + L+ + S D
Sbjct: 115 EEGYNRSLKEIRASHILITVDENAVPADTLKAYNQAIDIRKKALVGEKFEDLAVTFSQDP 174
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
N+ + Y + + + E +
Sbjct: 175 SSKENKGDLGYFSAFRMIYPFETVAYNTKKGQISMPVRTKFGYHLIYITDSRENRGEITV 234
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A K EI T E+ Q + Q Q ++++ + L
Sbjct: 235 AHIMILKSPKAESEITTTEKAKATIQDIYTKLKQGENFESLASQFSQDKNSAPKGGLLPR 294
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK------ 368
F+ + ++ F+L K +++ FG+ I + +P ++ E +
Sbjct: 295 FASGQLSSEEFENAAFALTKPNEYSAPFESQFGWHIVKLVEKQPIKKLNEMEKELDEKIR 354
Query: 369 ---------KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ N++R + ++ Y +++ + + + + D L
Sbjct: 355 KDDRSRLITNSLTNKLRKKYTIVRNEKLYAQIKTLVTDKIYVSQWKLPANLKDYDSNLFK 414
Query: 420 FAGKDVKGKEVAAIPYKEQLLF---RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
K + G + +I +Q + GK + V Y +++ P
Sbjct: 415 IENKSITGTQFLSILEAQQKSDLKIKPVGKLVDFVYQNFVDAQMTDYYNDNLEKEFPDFA 474
Query: 477 RKLEEVLTDV-------KKDWKTVKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGA 526
+EE + K+ W+ K K AN+L ++ + G
Sbjct: 475 NVIEEYRDGLLLFDLMEKEIWEKAKQDTLALKKYYNANKLQYQWKNRAEVLVASSTKEGV 534
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV------------------KCFPIENG 568
+ +N+ ++ +V + ++ ++G
Sbjct: 535 AKEARKLLNKDQTDDFIKTTLNTKEVVNVMIKKENYEEGSENFPKKVEFKTGVSEIYKDG 594
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
Y V KV+ V+ D+ + + L D+ ++ LK ++ V ++ + +R
Sbjct: 595 EFYFVNKVSKIIPASVKTFDEAHGRVVNDYQQYLEDNWVSNLKKEFKVNINQEVFER 651
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/215 (12%), Positives = 68/215 (31%), Gaps = 8/215 (3%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D + K+ KG ++ F + + Y + I +S R
Sbjct: 173 DPSSKENKGDLGYFSAFRMIYPFETVAYNTKKGQISMPVRTKFGYHLIYITDSRENRGEI 232
Query: 479 LEEVLTDVKKDWKTVK--TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT--NQI 534
+ +K + T E+ + + + K+G+NF + + +
Sbjct: 233 TVAHIMILKSPKAESEITTTEKAKATIQDIYTKL-KQGENFESLASQFSQDKNSAPKGGL 291
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFI 591
+ + + F+ P E+ + + K+ + EK+
Sbjct: 292 LPRFASGQLSSEEFENAAFALTKPNEYSAPFESQFGWHIVKLVEKQPIKKLNEMEKELDE 351
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ + +S+ L+ +Y++ ++ L +
Sbjct: 352 KIRKDDRSRLITNSLTNKLRKKYTIVRNEKLYAQI 386
>gi|307719645|ref|YP_003875177.1| PPIC-type PPIASE domain-containing protein [Spirochaeta thermophila
DSM 6192]
gi|306533370|gb|ADN02904.1| PPIC-type PPIASE domain protein [Spirochaeta thermophila DSM 6192]
Length = 336
Score = 82.6 bits (201), Expect = 2e-13, Method: Composition-based stats.
Identities = 54/352 (15%), Positives = 113/352 (32%), Gaps = 68/352 (19%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V ++VP ++ + Q+ G V+ E + L +++LD L+
Sbjct: 43 SGEVAARVNGEEVPSKEVEREVQRYVAQY-QQYGMEVSPEEEQK--LREQVLDVLIGRLL 99
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
L Q + +GL D +V +I + L G S + F + LA+ G E+E+ + ++
Sbjct: 100 LLQEAKRMGLSVDQAQVEAQIEQYKLQSG-----SEETFKNILAQAGYTEEEFREELSRA 154
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
VV V S+ +++
Sbjct: 155 FLLQQVVDEKVTKH---------------------------------LSVSDEEARAYYD 181
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ + + PE R +IL + K E + + K
Sbjct: 182 ENPEQFEQPEQIRARHILIRLDPDASKEEEEAAYAKIHEVQEK----------------- 224
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+ + + E + + LG F + + + +
Sbjct: 225 --------LKQGADFAELARTYSEGPSAPNGGDLGFFGRGQMVPA--FEEAAFALEVNQV 274
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+ V+ +G + V++ + + SF+EVK + + K+SE + +
Sbjct: 275 SDVVRTEYGLHLIQVTDKQEAGKASFEEVKDQLKEMLLQQKSSEAINALVEE 326
Score = 37.1 bits (83), Expect = 9.3, Method: Composition-based stats.
Identities = 19/174 (10%), Positives = 47/174 (27%), Gaps = 2/174 (1%)
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
V+ ++ ++ E + + K EE
Sbjct: 159 QVVDEKVTKHLSVSDEEARAYYDENPEQFEQPEQIRARHILIRLDPDASKEEEEAAYAKI 218
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ ++ +L G + Q++ L + +
Sbjct: 219 HEVQEKLKQGADFAELARTYSEGPSAPNGGDLGFFGRGQMVPAFEEAAFALEVNQVSDVV 278
Query: 460 DGSY--MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
Y +Q+ + A EEV +K+ K++E +++ +L +
Sbjct: 279 RTEYGLHLIQVTDKQEAGKASFEEVKDQLKEMLLQQKSSEAINALVEELKGKAE 332
>gi|332521072|ref|ZP_08397530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
5H-3-7-4]
gi|332043165|gb|EGI79362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lacinutrix algicola
5H-3-7-4]
Length = 676
Score = 82.2 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 72/669 (10%), Positives = 182/669 (27%), Gaps = 79/669 (11%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+ V + L F ++ + L + + +V V S F+ + + L ++
Sbjct: 29 LKKIVFLMNFKFLIKCFYLYFATTLLANAQQEEVIFTVEDTPVLASEFLRVYNKNLDLVK 88
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
++ V+ L + Q + + L+ + F G
Sbjct: 89 EESQKDVDG-----------YLKLFIEYKLKLQEAKALNLDKKPSYIRE-------FQGY 130
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
N+ S + + + E+ Y ++ + +V + L E
Sbjct: 131 KNQLSKNYLNDSKVTDALVEEAYARLANEIKASHILVKIDQDASPKDTLAAYNEILKLRE 190
Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
+ V L + P + K
Sbjct: 191 RVVQEGYKKVQSDVHNGKTIFAEDLGYFSA---FKMVYPFENAAYNTKVNDISMPFKTRF 247
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
++ ++ + + +E ++ Q + Q +E++ S
Sbjct: 248 GYHVVKVFDKRKSQGEITVAHIMIENDEEKIKEIYKRLEQGEQFQALAKQFSEDKSSSSK 307
Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
L FS + F++ GD++ FG+ I + N KP F+E+K
Sbjct: 308 GGELKPFSGGQLSSPEFEAVAFAIKNPGDYSKPFKTQFGWHIVKLINKKP--LPDFKEIK 365
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
++ N++R S+ + + + + T + K + V
Sbjct: 366 AELINKIRRDSRSKVINDSRVKALKEKYKITKNPDALNYFKSILTKEYKVGRWSIPKNLT 425
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD----------GSYMWVQIKESIPARDRK 478
I E + + L K + S++ ++ +
Sbjct: 426 TDKTIFTIEDKVLTYGNFAEYLLKSQRRNINKPLTTALNNSYTSFLNSELFKYQEQNLIN 485
Query: 479 LEEVLTDVKKDWK-----------------------------------------TVKTAE 497
+ + +++K A
Sbjct: 486 DNKDYAQIVEEYKDGLLLFDLMETEIWNAAKNDTLAVKTFYSKHKQNYFYKKRINAIVAS 545
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ + V + K+ + I K + + + + + + +
Sbjct: 546 SAKKEDIKKVAKLLKQNQPIEAIKKEVNTNNEIKVSFT---SGELNYNHQALPKALKFKK 602
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ K + +YVV + + Q ++ + + + + L S+Y V
Sbjct: 603 GVSKIYKH--NQAYVVVLIKDLLPESQQTFEEAKGKVMSDYQEIKEANWLKVLASKYKVE 660
Query: 618 VHDNLIQRY 626
++ +++ +
Sbjct: 661 INKDVLAKV 669
>gi|110346942|ref|YP_665760.1| hypothetical protein Meso_4128 [Mesorhizobium sp. BNC1]
gi|110283053|gb|ABG61113.1| hypothetical protein Meso_4128 [Chelativorans sp. BNC1]
Length = 725
Score = 82.2 bits (200), Expect = 2e-13, Method: Composition-based stats.
Identities = 75/661 (11%), Positives = 168/661 (25%), Gaps = 85/661 (12%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALF------SVSGSSTVVSVGRQKVPFSSFINS 59
R+ + + +P + S F S + V + ++
Sbjct: 99 RQPTLGQYVASIFAITTIPAALVFFSSDYFADMTLPSPPAPNVVATFEGGQITLEDIEAH 158
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
S N L + + ++LVS + ++ + EA I
Sbjct: 159 LNMLSSSTS-------NPGPMSQEALLETV-EDLVSDQLILRWAANRKPEA-DESFQHAI 209
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
++ E + Y + + R+
Sbjct: 210 KHINENLNLESFADQLHTERISISESSIREYYDKNKARYEGRSFTEVRDEIRRTLVAEQE 269
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Y E + + + + PS L ++ + D ++ P + + F
Sbjct: 270 PAFVEDYLEKLRTSASITRSFDLLDVPAPSQKELETYYRQNIDRFKLPRRAIVDELEFSA 329
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
Q Q+EA A ++ G F
Sbjct: 330 ---------------------------------SQFSPKAQQEAASALLGIQGGATFQAT 356
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
A K+ PD D G+ V Y + + + P+
Sbjct: 357 AGRFSKARFSSRAEVPEGSRNPD---WDKYVFALVPGELASVFQAGGSYYVVRLQEVMPA 413
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKR--------------LEEFLALGTSMDEIS 405
SF EV+ I +R K ++ ++ + + ++
Sbjct: 414 GAKSFAEVRPTIMTTVRTQKEQRWFADNGEKTLFTIKGQRYSLRDFYKEYEEASLREQFE 473
Query: 406 RREKIVSIDLPLVDF-----AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
E + + L+D D E L + + D + + D
Sbjct: 474 GAEGLKRLANALIDRMLLVSDTYDRLLDVANKPLADETRLRLLRQMMEQEEVDDRIEVSD 533
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE--GKNFR 518
+ + A ++++ + + G +F
Sbjct: 534 EQIQAFYSDNRDRLVSPPKSRIRYVRIGLGSSEADASRARERSDEAYRKLTGAVPGSDFA 593
Query: 519 DIGKNLGASLLTTNQIN--------RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
+ + + T ++ D + + + V P E G S
Sbjct: 594 SVAQEYSEDVETASKGGEFPDWIGESGDPLGELMSHPFHEAIQDMEPGKVG-KPFELGGS 652
Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK----SQYSVTVHDNLIQRY 626
+ +VT + D+ ++ + + S+ L+ + V ++ +++ Y
Sbjct: 653 IYIVEVTERTLPQQLTLDEAKPFIEEYLTNQQHRSMAEELQRRQLQEAKVQLYPQVLEEY 712
Query: 627 L 627
L
Sbjct: 713 L 713
>gi|187736088|ref|YP_001878200.1| hypothetical protein Amuc_1599 [Akkermansia muciniphila ATCC
BAA-835]
gi|187426140|gb|ACD05419.1| hypothetical protein Amuc_1599 [Akkermansia muciniphila ATCC
BAA-835]
Length = 591
Score = 81.8 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 78/640 (12%), Positives = 181/640 (28%), Gaps = 79/640 (12%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ +RK + +A + LV + + F+ +S + T VSV + + N
Sbjct: 1 MLDYLRKHTIVIMAAMALVFVGLMFVGGDVSGGSLTGMFKQTFVSVDGKSYGEKDYNNMG 60
Query: 61 KQELG---MISQKIGFVVNSERARSVGLDKK--ILDN-------LVSGATLDQFIEDIGL 108
+ L G ++ + L + +L L + + +GL
Sbjct: 61 RTGLSVAFSFPSTFGPLLQDNFSSEENLRELCHLLKTNNPNAAFLAYRGIIRREAGRLGL 120
Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH-----YTKMLSRTD 163
+ I P F F + + ++ G K+ + +S
Sbjct: 121 TPSTAEIDDAICNIPEFQDDKGVFDPQKYDNFISMRGNMGKKLQEELLRGLMEDTISLER 180
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
+ + GG+ + + +++ L DP + +++K+K+N
Sbjct: 181 IKDVLAGGISVEPGFAEAVAESNSQQITINTAFLEKSAFRPKTDPGEEEIKTFWDKHKEN 240
Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
Y+ E I + QA + + VE ++
Sbjct: 241 YKNEEA----------RFFTVYTFIPAGDAQAPKPGDISNATMETMNLVENDIWEPLNAT 290
Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+ LA+ G + + + +I A G ++
Sbjct: 291 NG---RNMDQAISEALAKTPGVCKMEKKSYTAVTRKNAPQEINQAINQSASDGRSANLLD 347
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
+F + + A + K + + LE + ++
Sbjct: 348 VAFSL----------AGAPALNADADAKAIEEARAKTGAEQISTMQVLENGQVVLIRLEG 397
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
I+ + + A + +L + ++P+ + + +A G
Sbjct: 398 ITPVKALPYETARNSARADLLESMTVESMNKAATELNTELQKAENPVEQFNAIAGKTG-- 455
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ P + + + + KT EE+ S + +
Sbjct: 456 --AKTASYGPFVNPNVLLSS----VNLQNAKTQEELQSLLERAMN--------------- 494
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+R+ + + + Q S PI G ++ ++ ++
Sbjct: 495 -----------SRLAPPKELPAPEEVFQAASVINPGQMAQPINTGDGILLTQLVKRELED 543
Query: 584 VQEK-----DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
E + LT ++ + +QY V +
Sbjct: 544 TPEFQIKSTQQIAPALTAQAKSMIMLDWLKACITQYKVEI 583
>gi|327312390|ref|YP_004327827.1| hypothetical protein HMPREF9137_0079 [Prevotella denticola F0289]
gi|326946353|gb|AEA22238.1| conserved hypothetical protein [Prevotella denticola F0289]
Length = 715
Score = 81.8 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 64/619 (10%), Positives = 166/619 (26%), Gaps = 41/619 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFINS 59
L IR S+ + + + FL + + G + + +K+ +
Sbjct: 4 LGKIR--SKGGMLVAAIGLALFAFLAEEGFRSCNGIKGEARQQIGEILGEKISVQDYQKL 61
Query: 60 WKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ I + E + ++ LVS L E +GL +
Sbjct: 62 IDEYQSAIKFTMQRDNLTEEEL--NQVKDQVWQQLVSNRVLQADAEKVGLTVTEQEIQNV 119
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ LA+ ++ L + + L
Sbjct: 120 LNDGTN--------------PMLAQTPFVNQQTGRFDVNALKQFLDGYNKAKSEKSPQLD 165
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
Q Y+ + S + + K E + L
Sbjct: 166 QMQTVYDYWLFIEKNLRTQLLGQKYQALLASCVLSNKAEAKMAFKDNNEESQIQLASLAY 225
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
K+ I+I++++L+A+Y++ K + + F + + K+
Sbjct: 226 SSVKDADIKITDEDLKAKYDELKPAFRQNVETRD--IKFVDYQIKASTADRNAVVKEMNG 283
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
L ++ + ++ S S IP + + S + + D I N +
Sbjct: 284 LQKQLATAADPATVVSKSGSEIPYLGVPVSSKAYRQYPDIASRIDSLAVGTTGVTENKQD 343
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ + + K + + + ++
Sbjct: 344 NTLNIIRVLSKAQLPDSVQFRQIQVAANTPDEARAKADSIQKALAGGADFEALAKRYGQT 403
Query: 419 D---FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ + + + + +++ +A + + +Q+ +
Sbjct: 404 GEKVWFTGQQYEAAPSMSQDNRTYINALLSGEVNATQNIALAQGN---VILQVLDKKAMT 460
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
+ V+ + K T E ++ ++ V + + + G + + N I+
Sbjct: 461 TKTTAAVIKKLIDFSKA--TRNEAYNRFSEFVAKNTTA-ADLEKNASKYGYRVQSLNDIS 517
Query: 536 RMDNENKFF--GYDGISQVFSGPVEMVKC-FPIENGLSYVVFKVTNSKV------GPVQE 586
++ D + +F V + + +V + Q
Sbjct: 518 TAEHYVAGIHGTRDALKWLFEAKQGDVSQLYECGDNDHLLVIVLNAIHPQGFRAWDDAQV 577
Query: 587 KDKFISYLTQMMNKDLLDS 605
K+ + + +LL +
Sbjct: 578 KEILKREVMKDKKAELLMA 596
>gi|153809257|ref|ZP_01961925.1| hypothetical protein BACCAC_03569 [Bacteroides caccae ATCC 43185]
gi|149128027|gb|EDM19248.1| hypothetical protein BACCAC_03569 [Bacteroides caccae ATCC 43185]
Length = 713
Score = 81.8 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 59/613 (9%), Positives = 163/613 (26%), Gaps = 50/613 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + + V V + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ ++ G ++ ++ + ++ + V+ +++ E +GL + +
Sbjct: 61 EYTEVVKLMRGVTALNDE-QTSQVRDEVWRSYVNNKLIEKEAEALGLTVSTAEIQDILKA 119
Query: 121 -------RSPLFHGKDNKFSHDVFVSRL-AREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
++P + + F D+ L +NE + Y + + F+
Sbjct: 120 GVHPLLRQTPFQNPQTGNFDKDMLNKFLVEYAKMNESQMPAQYAEQYNNMYKYWSFIQKT 179
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
+ L ++ + + + + + R +Y +
Sbjct: 180 LIQSRLAEKYQALVSKALISN---------------------PVEAQDAFDARVNQYNML 218
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
+ + I + EL+ Y K KE++ + + + + +++K
Sbjct: 219 LAAVPYSSVVDSTIVVKESELKDLYNKKKEQFKQYQETRDIKYIDVQVTASAADRAAIQK 278
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+ S E + + Y +
Sbjct: 279 EVDEATEQLATTTDDYTSFIRSVGSEAPYVDLFYNKTAFPSDVVARLDSASVGSVYGPYY 338
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
+ K A+ + + + K ++ ++ + ++
Sbjct: 339 NGGDNTINSFKI-VAKTAAADSVEFRQIQVYAADAAKTKTLADSIYNAIKGGANFVELAK 397
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
D E A I + + +Q+
Sbjct: 398 KYGQTGDSNWMTAAQYEGAQIDGDNLKFISAINSTGVNELVNLPLGQAN--VILQVTNKK 455
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI---GKNLGASLL 529
+D V + V+ ++E ++A ++ + + + G LL
Sbjct: 456 AVKD------KYKVAVVKREVEFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYKLL 509
Query: 530 TTNQINRMDNENKFF--GYDGISQVFSGPVEM--VKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ ++ + + F + +V + N K +
Sbjct: 510 DRADLYSSEHGIGGVRGTKEALRWAFDKAKPGEVSGLYECGESDHMMVVGLVNIKPEGYR 569
Query: 586 EKDKFISYLTQMM 598
L +
Sbjct: 570 PLKAVQEQLRAEI 582
>gi|212550676|ref|YP_002308993.1| peptidyl-prolyl cis-trans isomerase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548914|dbj|BAG83582.1| putative peptidyl-prolyl cis-trans isomerase [Candidatus
Azobacteroides pseudotrichonymphae genomovar. CFP2]
Length = 711
Score = 81.8 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 57/591 (9%), Positives = 172/591 (29%), Gaps = 50/591 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L+ IR ++ + + + V F+I S + F +V + + + +
Sbjct: 4 LKKIRN--KSLLLVMVVGVALFSFIIGDFLRSGSAFINQKKENIVVINGEAINCQDYQTR 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG-- 117
+ + + ++ + + IL+ ++ L + + +GL
Sbjct: 62 VEDYINNAIRNNNNQPLTDD-EQYQIKQMILNEMIDDILLFKEAKKLGLVVSKEEYKDLV 120
Query: 118 -------EIARSPLFHG-KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
+ + P F K KF + L I ++Y + L + +
Sbjct: 121 MGDNISPLLQQIPSFRNPKTKKFDKTALLHFLQN--IENEDYSTEQSSRLMSIKKAWLAI 178
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
L + + + + + + + + Q + D
Sbjct: 179 EKQIIKEQLKKKFNTLFTYSILTNVLEARAFYEEKKINVDFDYVAQSYNSIPDREVNVSD 238
Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
I + ++ E + + A + Q++ KE + +S
Sbjct: 239 IEIQKRYNECKNLYRQKEGALVDFIA--------LNIVPSKKDYQMIENKLKELKKQLES 290
Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
K + IQ + + + I+ + ++ + ++ ++ +
Sbjct: 291 SKNIAEIIQSNPDILYTNAYITYNNLNESQKFLIEKNHAVGTVGIPILVNQTFNLYKFEG 350
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + V ++I + L + + GT +++
Sbjct: 351 MKTAPDSIKLNAVMIPSSMEEIKLKH-----------LSDSLIQVVKKGTPFSDMASTLS 399
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ + + + + + F+ +++ + G ++ ++
Sbjct: 400 -KGKTTGELGW-------MTESQLISRLDIQFKDKILTAKINEPVVIKSNIGIFLVQVLE 451
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
++ P + K+ + V + +T + ++ Q + + + R+ K+ G S+
Sbjct: 452 KTKPIKKYKIANIQIQVVP---SQETKTRLYNRFIQFISS-NHSIADLRENAKSSGFSIQ 507
Query: 530 TTNQINRMDNENKFF--GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
T +I++ + +F+ + Y
Sbjct: 508 TDVEISKDQININHIQNTRQIVQWIFNNKKGAISDIFECQNSEYFAVVAIK 558
>gi|288802505|ref|ZP_06407944.1| peptidyl-prolyl cis-trans isomerase [Prevotella melaninogenica D18]
gi|288335033|gb|EFC73469.1| peptidyl-prolyl cis-trans isomerase [Prevotella melaninogenica D18]
Length = 715
Score = 81.8 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 60/589 (10%), Positives = 158/589 (26%), Gaps = 35/589 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFINS 59
L IR S+ + + + FL + + + G + + +K+ +
Sbjct: 4 LGKIR--SKGGILVAAIGLALFAFLAGDAARSCDGIKGEARQQIGEILGKKISVQDYQKL 61
Query: 60 WKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ I + + + ++ LVS ++ E +GL +
Sbjct: 62 IDEYQSAIKFTMQRDNLTDQEL--NQVKDQVWQQLVSNRVIEVDAEKVGLTVTENEIQNV 119
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ L + ++ L + + +
Sbjct: 120 LNEGTN--------------PMLVQTPFVNQQTGRFDVNALKQFFDSYNKAKAAKSPQVE 165
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
QA Y+ + S + + K E + L
Sbjct: 166 QMQAIYDYWLFVEKNLRAQLLGQKYQALLASCVLSNKAEAKMAFKDNNEESQIQLASLAY 225
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
K+ +++++D+L+A+Y + K + + F + + A + K+
Sbjct: 226 STVKDSDVKMTDDDLKAKYAELKPAFRQNVETRD--IKFVDFQIKASAADRSQVVKEMND 283
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
++ + ++ S S IP + L S + + D I V N +
Sbjct: 284 FQKQLASAEDPAAVVSKSGSEIPYLGLPVSNKAYQQYPDIASKIDSLSVGTTGVVENAQD 343
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ + + K + ++
Sbjct: 344 NTLNIIRVLSKAQLADSIQFRQINIAAATPDEARAKADSIQKALAGGADFDALAKRYGQT 403
Query: 419 D---FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ + + + + +++ + + + +Q+ +
Sbjct: 404 GEKVWFTGQQYEMAPSMNQDNRTFINALLNGEVNATQNLALTQGN---IILQVLDKKAFT 460
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
+ V+ V K ++ +K ++ V + S + G + + N I+
Sbjct: 461 TKTTAAVIKKVIDFSKATRSN--AYNKFSEFVAKSSTV-ADLEKNAPKSGYQVQSLNDIS 517
Query: 536 RMDNENKFFG--YDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKV 581
++ D + +F V + N +V +T
Sbjct: 518 TAEHYVGGIPGTRDALKWLFEAKQGEVSPLYECGNNDHLLVIALTAVHP 566
Score = 67.6 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/347 (13%), Positives = 98/347 (28%), Gaps = 22/347 (6%)
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK-KGDFTP 340
+AD ++L G F LA+ G++ + E P ++ + F A G+
Sbjct: 379 KADSIQKALAGGADFDALAKRYGQTGEKVWFTGQQYEMAPSMNQDNRTFINALLNGEVNA 438
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
+ + + + + + +
Sbjct: 439 TQNLALTQGNIILQVLDKKAFTTKTTAAVIKKVIDFSKATRSNAYNKFSEFVAKSSTVAD 498
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+++ + + L + A V G IP L +F +
Sbjct: 499 LEKNAPKSGYQVQSLNDISTAEHYVGG-----IPGTRDALKWLFEAKQGEVSPLYECGNN 553
Query: 461 GSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ + + P R ++ V +K++ K AE++ +K G N
Sbjct: 554 DHLLVIALTAVHPQGYRSWDDAQVKEILKREVIKDKKAEKLMAKLK---------GVNSI 604
Query: 519 DIGKNLGASLLTTNQINRMDNE----NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+ GA + + NQI V P++ VF
Sbjct: 605 AAAQAKGAKVSSVNQITFAAPAFVQATGSVEPALSGAVAGTAAGKFSKAPVKGNAGVYVF 664
Query: 575 KVTNSKVGPVQEKDK-FISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+V + + D+ + N L+ + + L + V +
Sbjct: 665 QVVKKSMRAGSKYDETLVMQQAAQANMQLVGNFMQDLILKAKVVDNR 711
>gi|198284724|ref|YP_002221045.1| SurA domain [Acidithiobacillus ferrooxidans ATCC 53993]
gi|198249245|gb|ACH84838.1| SurA domain [Acidithiobacillus ferrooxidans ATCC 53993]
Length = 477
Score = 81.8 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/421 (8%), Positives = 99/421 (23%), Gaps = 60/421 (14%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
+ + V V + + + + E L +++L ++
Sbjct: 67 NTQNLDKVVAVVNDNIITSMQLEQRVGAVRARLQTQNPNAMPPEDI----LRRQVLQQMI 122
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
Q G++ D + I+ + N + D LA +G + + +
Sbjct: 123 LQDIELQIAHRAGIKVDKATLDQAISNL----AQANHLTPDQLRQALANQGQSWERFTHD 178
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
+ ++ V + + L +P +P+ +
Sbjct: 179 LEDRILVDRLMQQEVENRVHIGPDEVKTFAQQLKEMGGVSFDLQQIFIPLPDNPTPDAVG 238
Query: 215 QWFEKYKDNYRAP-----------------------------------------EYKRIS 233
+ ++
Sbjct: 239 AARRDAEQARDHVLAGERFGRVATQVSSGRDALQGGRLGWIKAGELPPAVAQTLLQLKVG 298
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT--VEQLVFPNQKEADEAFQSLK 291
I + +++ E + + + + A + Q+L+
Sbjct: 299 EISPVIPGPTGFHIFKLLDVKHGQPTVTEVKTAMIVLRAGNSLQLQEAEARAQDIQQALQ 358
Query: 292 KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G +F +LA + + +G + +PD + + G + I
Sbjct: 359 SGTRFSELARSYSQDPRTAANGGEMGWVAPGQLPDS--LERTLLTLQPGGVSSPIRVGNA 416
Query: 348 YVIAHVSNIKPS---FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
I H + + + N++ + E + +
Sbjct: 417 IYILHSQAQRQQAVEEKQIMAAARMQLYNRIVHERMDEWQRRIRDGAYVEVLEPGLRSSD 476
Query: 405 S 405
+
Sbjct: 477 A 477
>gi|260592565|ref|ZP_05858023.1| peptidyl-prolyl cis-trans isomerase [Prevotella veroralis F0319]
gi|260535611|gb|EEX18228.1| peptidyl-prolyl cis-trans isomerase [Prevotella veroralis F0319]
Length = 715
Score = 81.8 bits (199), Expect = 3e-13, Method: Composition-based stats.
Identities = 59/589 (10%), Positives = 156/589 (26%), Gaps = 33/589 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFINS 59
L IR S+ + + + FL + + + + + +K+ +
Sbjct: 4 LGKIR--SKGGILVAAIGLALFAFLAEEAFRSCNGIKSETRQQIGEILGEKISVQDYQKL 61
Query: 60 WKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ I + + ++ LV+ L+ + +GL +
Sbjct: 62 IDEYQSAIKFTMQRDNLTENEL--NQVKDQVWQQLVNNRVLEADAKKVGLTVTEQELSNV 119
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ LA+ ++ L + L
Sbjct: 120 LNDGTN--------------PMLAQTPFVNQQTGRFDINALQQFLDGYNKAKASNSPQLE 165
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
Q Y+ + S + + K E + L
Sbjct: 166 QMQTIYDYWLFVEKNLRTQLLGQKYQALLASCVLSNKAEAKMAFKDNNEESEIQLASLAY 225
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS--LKKGKKF 296
K+ +++++++L+A+YE+ K + + V K + +
Sbjct: 226 STIKDADVKVTDEDLKAKYEELKPAFRQNTETRDIKFVDYQIKASASDRNAIVKDMNALQ 285
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
QLA S+ GS VS + G+ G N
Sbjct: 286 KQLATATDPSMVISKSGSMIPYLGLPVSSKAYQQYPDIASKIDSLAVGTTGVTENKQDNT 345
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
V + D +I A+ +E + + + + K
Sbjct: 346 LNIIRVMSKAQLPDSVQFRQIQVAANTPEEAHAKADSIQKALAGGADFVAIAKRYGQTGE 405
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
V + + + + + ++ + + + +Q+ + +
Sbjct: 406 KV-WFTGQQYEVAPSMSEDNRTYIEALLNGEVNAIQNVALTQGN---IILQVVDKKAMKT 461
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ ++ + K ++ +K ++ V + + + G + + N ++
Sbjct: 462 KTTAAIIKKLIDFSKATRSD--AYNKFSEFVAKSATA-ADLEKNASKYGYHVQSLNDVST 518
Query: 537 MDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVG 582
++ D + +F V + + +V ++
Sbjct: 519 SEHYVAGVHGTRDALKWLFDAKQGDVSPLYECGDNDHLMVIVLSAIHPK 567
>gi|53805075|ref|YP_113118.1| peptidyl-prolyl cis-trans isomerase SurA [Methylococcus capsulatus
str. Bath]
gi|81682783|sp|Q60B78|SURA_METCA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|53758836|gb|AAU93127.1| peptidyl-prolyl cis-trans isomerase SurA [Methylococcus capsulatus
str. Bath]
Length = 454
Score = 81.4 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/445 (9%), Positives = 115/445 (25%), Gaps = 75/445 (16%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+ RK W+ + + W ++DA V V + S +
Sbjct: 3 ISSFRKGR--WLG----ALALFAVVCWSMADAAV----DRIVAVVDDGVILESELVRKVD 52
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + + L +++L+ ++ Q E +G++ D + +++
Sbjct: 53 EIKRSLRA-SRASLPPDSV----LVRQVLERMIVDKIQIQMAEKMGIQVDDDTLRMAVSQ 107
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+ N + D F LAREGI+ +++D ++ + + + +
Sbjct: 108 I----AQRNNLTPDQFRRSLAREGIDYGDFLDQVRSEIAMGRLRASQINNQIKISDREVE 163
Query: 182 AK----------RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
I P + + ++ K +
Sbjct: 164 HYLEAQGGSGAVADREYRLGHILIATPREASPDEVKKARERADRVVKELKAGLDFKDASI 223
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF-------------------------- 265
E E+ + +
Sbjct: 224 RYSDDPQALEGGDLGWRKLSEIPSHIAEVVGGMKDGEVSDPIRSPGGYHIVKMLAMRGVG 283
Query: 266 --SPEIRTVEQLVFPNQ---------KEADEAFQSLKKGKKFIQLAE----EQGKSLSDI 310
V ++ + ++ G F +LA ++G ++
Sbjct: 284 EAKLTKTHVRHILIRPNEVLSDEDAKNKLLALKTRIENGDDFAELARGHSDDKGSAIKGG 343
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS---FQEV 367
LG + + + + + + FG+ + V + S +
Sbjct: 344 DLGWVKPGALVPP--FEEAMNALDENQLSDPVQTQFGWHLIQVLERQESSDTNEVLKNRA 401
Query: 368 KKDIANQMRITKASEKVKEDYKRLE 392
+ ++ + + +++
Sbjct: 402 RDELFKRKVDEETELWLRKIRDEAY 426
>gi|160887185|ref|ZP_02068188.1| hypothetical protein BACOVA_05201 [Bacteroides ovatus ATCC 8483]
gi|156107596|gb|EDO09341.1| hypothetical protein BACOVA_05201 [Bacteroides ovatus ATCC 8483]
Length = 713
Score = 81.4 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 50/525 (9%), Positives = 141/525 (26%), Gaps = 34/525 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + + V V + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ ++ G ++ ++ + ++ + V+ +++ + +GL + +
Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119
Query: 121 -------RSPLFHGKDNKFSHDVFVSRL-----AREGINEKEYIDHYTKMLSRTDVVGMF 168
++P + + F D+ L E +Y + Y M +
Sbjct: 120 GVHPLLRQTPFQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQKT 179
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ R + + N + R + + + +
Sbjct: 180 LIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESEL 239
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ + ++ +I ++Q E+ + + ++ +
Sbjct: 240 KDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTSFIR 299
Query: 289 SLKKGKKFIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
S ++ L + SD L S S I + ++
Sbjct: 300 STGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAADS 359
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ V + + I N ++ + + Y + + L ++ E ++
Sbjct: 360 VE--FRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + ++ G + + Y
Sbjct: 418 IDGDNLKFISAINNTGVNELVNLPMGQANVILQVTNKKSVK-------------DKYKVA 464
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
IK + D + + E++ + A +
Sbjct: 465 VIKREVEFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRLL 509
>gi|298481511|ref|ZP_06999703.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D22]
gi|298272375|gb|EFI13944.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D22]
Length = 713
Score = 81.4 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 50/525 (9%), Positives = 141/525 (26%), Gaps = 34/525 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + + V V + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ ++ G ++ ++ + ++ + V+ +++ + +GL + +
Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119
Query: 121 -------RSPLFHGKDNKFSHDVFVSRL-----AREGINEKEYIDHYTKMLSRTDVVGMF 168
++P + + F D+ L E +Y + Y M +
Sbjct: 120 GVHPLLRQTPFQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQKT 179
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ R + + N + R + + + +
Sbjct: 180 LIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESEL 239
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ + ++ +I ++Q E+ + + ++ +
Sbjct: 240 KDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTSFIR 299
Query: 289 SLKKGKKFIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
S ++ L + SD L S S I + ++
Sbjct: 300 STGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAADS 359
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ V + + I N ++ + + Y + + L ++ E ++
Sbjct: 360 VE--FRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + ++ G + + Y
Sbjct: 418 IDGDNLKFISAINNTGVNELVNLPMGQANVILQVTNKKSVK-------------DKYKVA 464
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
IK + D + + E++ + A +
Sbjct: 465 VIKREVEFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRLL 509
>gi|295086974|emb|CBK68497.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
Length = 713
Score = 81.4 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 51/525 (9%), Positives = 142/525 (27%), Gaps = 34/525 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + + V V + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ ++ G ++ ++ + ++ + V+ +++ + +GL + +
Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119
Query: 121 -------RSPLFHGKDNKFSHDVFVSRL-----AREGINEKEYIDHYTKMLSRTDVVGMF 168
++P + + F D+ L E +Y + Y M +
Sbjct: 120 GVHPLLRQTPFQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQKT 179
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ R + + N + R + + + +
Sbjct: 180 LIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESEL 239
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ + ++ +I ++Q E+ + + ++ +
Sbjct: 240 KDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTSFIR 299
Query: 289 SLKKGKKFIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
S ++ L + SD L S S I + ++
Sbjct: 300 STGSEAPYVDLFYNKTAFPSDVVARLDSASIGTIYGPYYNGADNTINSFKIVAKAAAADS 359
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ V + + I N ++ + + Y + + L ++ E ++
Sbjct: 360 VE--FRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + ++ AG + + Y
Sbjct: 418 IDGDNLKFISAINNAGVNELVNLPMGQANVILQVTNKKSVK-------------DKYKVA 464
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
IK + D + + E++ + A +
Sbjct: 465 VIKREVEFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRLL 509
>gi|303245475|ref|ZP_07331759.1| SurA domain protein [Desulfovibrio fructosovorans JJ]
gi|302493324|gb|EFL53186.1| SurA domain protein [Desulfovibrio fructosovorans JJ]
Length = 339
Score = 81.4 bits (198), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/306 (10%), Positives = 89/306 (29%), Gaps = 9/306 (2%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + + + + G R+ L +++L+++++ +
Sbjct: 38 DRVVAVVNGKLITLFDLDSRVAELVQRTQ---GISFAPGDPRAEELRRQVLESMINDILI 94
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+Q + + + +I K N + F + LA+EG+ KE+ +
Sbjct: 95 EQEAARLKINVSETELDSQIDELK----KKNNLTQAQFQAELAKEGLTLKEFRKRMREDN 150
Query: 160 SRTDVVGMFVGGM--RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ ++G V + + D ++ + I+
Sbjct: 151 MKKRLLGFMVHRKVLVTDDEIRDYYEKHKATLSTTKSILGPKVSGNISFIMVPTKKQAEE 210
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ K + + +++ ++ + +++ ++ + V Q V
Sbjct: 211 LRQKIGAGTITFADAARKFSIGPGRDQGGDLGDVQVKDLAPPLRDALTAVPAGQVSQPVM 270
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
+ K ++ K S S+ + +E +
Sbjct: 271 LDGKAVLLKLRTGKNAAPAKTPQPAPSAGPSFESVRNQIQEMLYKQKFDKLFQDYMDNLR 330
Query: 338 FTPVIH 343
VI
Sbjct: 331 SKAVIE 336
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 14/133 (10%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+A +L + F D + + D + K + + P
Sbjct: 205 KKQAEELRQKIGAGTITFADAARKFSIGPGRDQGGDLGDVQVKDLAPPLRDALTAVPAGQ 264
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQE--------------KDKFISYLTQMMNKDLLDS 605
V + +G + ++ T P + +++ L + L
Sbjct: 265 VSQPVMLDGKAVLLKLRTGKNAAPAKTPQPAPSAGPSFESVRNQIQEMLYKQKFDKLFQD 324
Query: 606 VIAYLKSQYSVTV 618
+ L+S+ + V
Sbjct: 325 YMDNLRSKAVIEV 337
>gi|320354702|ref|YP_004196041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
propionicus DSM 2032]
gi|320123204|gb|ADW18750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfobulbus
propionicus DSM 2032]
Length = 327
Score = 81.4 bits (198), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 57/177 (32%), Gaps = 8/177 (4%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+I ++ + + +S A + +V V + S + ++++
Sbjct: 4 RILFFLVSICLVF--VSAASNANVVDRSVAIVNNDTITLSEVNELGRSFFKKVTEETPAD 61
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
E + ++D L+ L Q + +G++ V + R +NK +
Sbjct: 62 RLPEALQQA--RNTVIDKLIDKKLLVQEAKKLGIQVSDQEVDNALQRVLA----NNKATM 115
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ F L G+ EK+Y + + + ++ V R
Sbjct: 116 EQFHKELLAMGMTEKQYKEELRDQILSSKLINHEVRTKVVIPEEKILEYYQSNYTRQ 172
Score = 40.6 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 10/130 (7%), Positives = 37/130 (28%), Gaps = 7/130 (5%)
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
+ ++ K + + K+G +F ++ K + + + V
Sbjct: 198 SQDDAKEKIRKAYEKA-KDGDDFNELAKKYSDLPSAEDGGDLGTFQLHELAPAMQQAVAQ 256
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNS------KVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + + V++ K K++ L + + +
Sbjct: 257 LKSGEISPVVQIDNGYHFFKLVSSQGGATVSKADYEAVKEEIRERLYKQAMEARFKDWVK 316
Query: 609 YLKSQYSVTV 618
++ + + +
Sbjct: 317 SIRDKAYIKI 326
>gi|163787467|ref|ZP_02181914.1| peptidyl-prolyl cis-trans isomerase [Flavobacteriales bacterium
ALC-1]
gi|159877355|gb|EDP71412.1| peptidyl-prolyl cis-trans isomerase [Flavobacteriales bacterium
ALC-1]
Length = 718
Score = 81.4 bits (198), Expect = 5e-13, Method: Composition-based stats.
Identities = 70/650 (10%), Positives = 182/650 (28%), Gaps = 49/650 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
L IR+ R+ + + + + F+I L + + + +V + + F
Sbjct: 4 LNKIRQ--RSLILILVIALALFSFVIGDLFKNSDALTGESQDVIATVNGKDINRLDFQQK 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
K +++G V+S +A + I + + + E +GL + + +
Sbjct: 62 VKS----YQERVGGRVSSTQAMNT-----IYNQELRKIVMKSEFEALGLSVEKDEMRDLL 112
Query: 120 A----RSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
P F ++ F + + +A +
Sbjct: 113 KTSFSSYPEFQDENGIFDVNRLNAFIANLKDLQGANPDSAPLGNFLVNYDSWTNNEQTIA 172
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
+N + S + + + + D+ IS
Sbjct: 173 ANAVQQTYYNMIKAGVSTTISEAEDEYFGDAKTVDIRYVQVPYTSIADSLVEVSKNDISA 232
Query: 235 ILFDVHEKEK-KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
+ + EK K ++ + E +K + ++ + G
Sbjct: 233 YIKNNEEKYKVDERREIVYVEFKEEASKADEDRIKADLLKLKSDRPEWNESSKNTDTIPG 292
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
E+ + SDI + A G + + ++ +
Sbjct: 293 FDSTTNVEDFINANSDIKYNDAFLRAAQLPATAKDTLMKLDVGSYYGPYRDGEYFKLSKI 352
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
S + + K + ++ + ++ ++ +
Sbjct: 353 I-TVKQLPDSVNVRHILVPFAGASNAGPDVTKTLAEAKITADSILAKIKSGTKFMDLLEL 411
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D + G+ A F+ F D+ + V G ++ +++
Sbjct: 412 SS---DKVSNENDGELEFAYNAGMAPEFKAFSFDNKVGDIDVVGTSFGYHIIEILEQKSF 468
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
K+ + V+ + +T +V +K ++ E + + +F + +
Sbjct: 469 NTAIKVATLADKVEP---SDETLSDVFNKMSKF--EIAAKDGDFNALAAERKLVVKPIVF 523
Query: 534 INRMDNENKFFGY-DGISQVFS--GPVEMVKCFPIENGLSYVVFKVTNSKVG-------- 582
+N + + F+ K FPI +G ++V K+ + K
Sbjct: 524 KELDENIPTLGSQREVVRWAFNEGTEKGEYKNFPI-SGFGFIVAKLVDKKPEGLMSVEDA 582
Query: 583 ---------PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
++ +T D+ + ++ +VT+ + +
Sbjct: 583 SITALPEIRKEKKAKMIRDKITATSIDDIAKNNGQSPRTAAAVTIKNTTL 632
Score = 79.5 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/517 (10%), Positives = 137/517 (26%), Gaps = 28/517 (5%)
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+E + I + + D V +E ++ + +L
Sbjct: 223 VEVSKNDISAYIKNNEEKYKVDE---RREIVYVEFKEEASKADEDRIKADLLKLKSDRPE 279
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+ + ++ + E+ + A A K
Sbjct: 280 WNESSKNTDTIPGFDSTTNVEDFINANSDIKYNDAFLRAAQLPATAKDTLMKLDVGSYYG 339
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
Y+ Y K++ S + P++
Sbjct: 340 PYRDGEYFKLSKIITVKQLPDSVNVRHILVPFAGASNAGPDVTKTLAEAKITADSILAKI 399
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+S K ++L+ ++ + +D L F+ + K GD V
Sbjct: 400 KSGTKFMDLLELSSDKVSNENDGEL-EFAYNAGMAPEF-KAFSFDNKVGDIDVV----GT 453
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
H+ I + + +A+++ + + + E A + ++
Sbjct: 454 SFGYHIIEILEQKSFNTAIKVATLADKVEPSDETLSDVFNKMSKFEIAAKDGDFNALAAE 513
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
K+V + + + + + +++ F + + + ++ +
Sbjct: 514 RKLVVKPIVF------KELDENIPTLGSQREVVRWAFNEGTEKGEYKNFPISGFGFIVAK 567
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + P +E+ + + K A+ + K + DI KN G S
Sbjct: 568 LVDKKPEGLMSVEDASITALPEIRKEKKAKMIRDKITA---------TSIDDIAKNNGQS 618
Query: 528 LLTTNQINRMDNENKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-PV 584
T + + G + F V PI+ V +VT +
Sbjct: 619 PRTAAAVTIKNTTLSGAGVEPQVVGAAFGLAQG-VTSKPIDGEKGVYVIEVTKVNEATKL 677
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
++ L + V L+ + +
Sbjct: 678 DNYTSIMNRLNAERKNIIQGKVYQALEKAAEIEDNRA 714
>gi|288928286|ref|ZP_06422133.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317
str. F0108]
gi|288331120|gb|EFC69704.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317
str. F0108]
Length = 713
Score = 81.1 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 49/550 (8%), Positives = 136/550 (24%), Gaps = 24/550 (4%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
+ V V +K+ F + I + G N + + + + V
Sbjct: 37 TRNNQRQQVGEVNGEKISVQEFQKMVDEYAEAIKMQQGQD-NLNDEQLNQVKDMVWTSYV 95
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
+++ +++GL + + G + FV+ + G + +
Sbjct: 96 QNKLVEKEAKELGLTVTDQEMQNVLN-----QGTNPMLMQTPFVN--QQTGRFDASSLKK 148
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
+ + S + + + +++P A +
Sbjct: 149 FLAEYKNQQTTNPQMAQQYESIYKFWTFIEKQLRTQLLAQKYQSLLAHCLLSNPVEAKMA 208
Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
E + + + S V E ++ +EL+ +++ E I +
Sbjct: 209 FKEENEESQIQLAAFPYSSIEDSKVQVSESDLKAKYEELKPRFKQYVETRDIKYIDIQVE 268
Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD-ISLGSFSKEYIPDVSLADSIFSLA 333
++ + F K + S ++ S +
Sbjct: 269 ASPEDKAGLKKQFADYTKELTEAADPTNVVRKSSSLVNYLGLPVGKDAYPSDIAARLDSM 328
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
G + + V + E ++ A + Y L
Sbjct: 329 SVGSVYGPVENKQDNTLNLVKLVAKVQLPDSVEYRQIQVGGATPEAAHKTADSIYTALTN 388
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
+ + + + A K + + +
Sbjct: 389 GADFEALAKKYGQTGEKTWMTTRQYQMAPSMDKDTKDYINSLNTMGVNDIKNITLAQGNI 448
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEV-LTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
L + + A ++ + +K + + ++ A+ +V K
Sbjct: 449 ILQVLNRKGM----VTKYQAAVVKRTIDFSKETYRKAYNQFSSFVSANATADAVVKNAVK 504
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV-KCFPIENGLSY 571
G ++ K++ S I + + +F V + +
Sbjct: 505 NGYRLQE-AKDVTTSQHNLAGIRST--------REALKWLFDAKEGSVSPLYECGDNNHL 555
Query: 572 VVFKVTNSKV 581
++ + +
Sbjct: 556 LLVILDHINP 565
Score = 54.1 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/344 (11%), Positives = 98/344 (28%), Gaps = 13/344 (3%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD-F 338
K AD + +L G F LA++ G++ + + + P + + +
Sbjct: 376 HKTADSIYTALTNGADFEALAKKYGQTGEKTWMTTRQYQMAPSMDKDTKDYINSLNTMGV 435
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ + + + + V+ + + K + A
Sbjct: 436 NDIKNITLAQGNIILQVLNRKGMVTKYQAAVVKRTIDFSKETYRKAYNQFSSFVSANATA 495
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
++ + + + + V + ++ G I + L +F +
Sbjct: 496 DAVVKNAVKNGYRLQEAKDVTTSQHNLAG-----IRSTREALKWLFDAKEGSVSPLYECG 550
Query: 459 PDGSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
+ + V + P R L + V VK + K AE++ +K N V +
Sbjct: 551 DNNHLLLVILDHINPMGYRSLTDSQVKEMVKAEVIKDKKAEQILAKLNG-VTSIAAAKAK 609
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
+ + + + V + P++ +F+V
Sbjct: 610 GAVVTPVNQVTFASPVFLTATGASEPALS----GAVAATAKGAFDKTPVKGNAGVYMFQV 665
Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
T + PV+ K + + + L V +
Sbjct: 666 TGRTMRPVKFNAKETEMRLRQRAMQYAGNFMNQLYINGKVVDNR 709
>gi|237715673|ref|ZP_04546154.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
gi|262408682|ref|ZP_06085228.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294807295|ref|ZP_06766109.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
gi|229444382|gb|EEO50173.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
gi|262353547|gb|EEZ02641.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294445593|gb|EFG14246.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
Length = 713
Score = 81.1 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 51/525 (9%), Positives = 142/525 (27%), Gaps = 34/525 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + + V V + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ ++ G ++ ++ + ++ + V+ +++ + +GL + +
Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119
Query: 121 -------RSPLFHGKDNKFSHDVFVSRL-----AREGINEKEYIDHYTKMLSRTDVVGMF 168
++P + + F D+ L E +Y + Y M +
Sbjct: 120 GVHPLLRQTPFQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQKT 179
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ R + + N + R + + + +
Sbjct: 180 LIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESEL 239
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ + ++ +I ++Q E+ + + ++ +
Sbjct: 240 KDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTSFIR 299
Query: 289 SLKKGKKFIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
S ++ L + SD L S S I + ++
Sbjct: 300 STGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAADS 359
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ V + + I N ++ + + Y + + L ++ E ++
Sbjct: 360 VE--FRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + ++ AG + + Y
Sbjct: 418 IDGDNLKFISAINNAGVNELVNLPMGQANVILQVTNKKSVK-------------DKYKVA 464
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
IK + D + + E++ + A +
Sbjct: 465 VIKREVEFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRLL 509
>gi|224369907|ref|YP_002604071.1| PpiD2 [Desulfobacterium autotrophicum HRM2]
gi|223692624|gb|ACN15907.1| PpiD2 [Desulfobacterium autotrophicum HRM2]
Length = 314
Score = 81.1 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 21/199 (10%), Positives = 58/199 (29%), Gaps = 5/199 (2%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI + F ++ L +++ V V + + + + + I G+
Sbjct: 5 KINFGLAIGVFTLFTLCGNVYAEIVDRIVAIVNEDIITLTELNTALRPYIDKIDS-AGYT 63
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ + L +L +V DQ ++ + + I R +
Sbjct: 64 GDKKEKILFKLRTDMLSRMVDRKLTDQEVKKFNITVTDKEIDAAIERLKQAQ----LMTQ 119
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ + L ++G+ +Y + + R ++ V A +
Sbjct: 120 EDLETALEKDGMTFADYREKMRLEIMRPKLINYSVKSKVIVTDKDIAAYYAEHQAEYAGV 179
Query: 195 IVLNNRHVPAIADPSNAVL 213
++ + + +
Sbjct: 180 RKFRLSNILVSDESTAETV 198
Score = 41.4 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 21/252 (8%), Positives = 70/252 (27%), Gaps = 11/252 (4%)
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
K + + + + + D+ ++ I D +D A + +K ++
Sbjct: 62 YTGDKKEKILFKLRTDMLSRMVDRKLTDQEVKKFNITVTD-KEIDAAIERLKQAQLMTQE 120
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
E L + + + + + +K + D+ + + + ++ V+
Sbjct: 121 DLETALEKDGMTFADYREKMRLEIMRPKLINYSVKSKVIVTDKDIAAYYAEHQAEYAGVR 180
Query: 495 TAEEVS-----SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ + V + G++F+ + L +
Sbjct: 181 KFRLSNILVSDESTAETVWNRLETGEDFKALAGELSKAPNAAEGGALGSFALDTLSDQLK 240
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL----LDS 605
+ I + +F + D+ + + + + +S
Sbjct: 241 VAIGKLEPGQYTNV-IPTDQGFQIFFLDEIVESKGNALDEVKDEIQKKLYDSIVEKKFNS 299
Query: 606 VIAYLKSQYSVT 617
+ L+ + +
Sbjct: 300 WLESLREKSLIK 311
>gi|260171516|ref|ZP_05757928.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D2]
gi|315919830|ref|ZP_07916070.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313693705|gb|EFS30540.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 713
Score = 81.1 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 59/615 (9%), Positives = 163/615 (26%), Gaps = 48/615 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + + V V + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ ++ G ++ ++ + ++ + V+ +++ + +GL + +
Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLVEKEAKALGLTVSAAEIQDILKA 119
Query: 121 -------RSPLFHGKDNKFSHDVFVSRL-----AREGINEKEYIDHYTKMLSRTDVVGMF 168
++P + + F D+ L E +Y + Y M +
Sbjct: 120 GVHPLLRQTPFQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWTFIQKT 179
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ R + + N + R + + + +
Sbjct: 180 LIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESEL 239
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ + ++ ++ ++Q E+ + + +
Sbjct: 240 KDLYNKKKEQFKQYQETRDVKYIDVQVTASAEDRAAIQKEVDEATAQLATTTDDYTSFIR 299
Query: 289 SLKKGKKFIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
S+ ++ L + SD L S S I + ++
Sbjct: 300 SVGSEAPYVDLFYNKTAFPSDVVARLDSASVGAIYGPYYNGADNTINSFKVVAKAAAADS 359
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ V + + I N ++ V + Y + + + ++ E ++
Sbjct: 360 VE--FRQIQVYAEDAVKTKTLADSIYNAIKGGANFADVAKKYGQTGDANWITSAQYEGAQ 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + ++ G + + Y
Sbjct: 418 VDGDNLKFISAINNTGVNELVNLPMGQANVILQVTNKKSVK-------------DKYKVA 464
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
IK + D + + E++ + A + + N+G
Sbjct: 465 VIKREVEFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRLLDR-MDLSSSEHNIGG 523
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
T + ++ K P ++ + +V + + K +
Sbjct: 524 VRGTKEALRWTFDKAK-------------PGDVSGLYECGESDHLMVVGLVSIKPEGYRP 570
Query: 587 KDKFISYLTQMMNKD 601
L + KD
Sbjct: 571 LKAVQDQLRAEIVKD 585
>gi|237721455|ref|ZP_04551936.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
gi|293370821|ref|ZP_06617366.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|229449251|gb|EEO55042.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
gi|292634037|gb|EFF52581.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
Length = 713
Score = 81.1 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 50/525 (9%), Positives = 142/525 (27%), Gaps = 34/525 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + + V V + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ ++ G ++ ++ + ++ + V+ +++ + +GL + +
Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119
Query: 121 -------RSPLFHGKDNKFSHDVFVSRL-----AREGINEKEYIDHYTKMLSRTDVVGMF 168
++P + + F D+ L E +Y + Y M +
Sbjct: 120 GVHPLLRQTPFQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQKT 179
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ R + + N + R + + + +
Sbjct: 180 LIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESEL 239
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ + ++ +I ++Q E+ + + ++ +
Sbjct: 240 KDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTSFIR 299
Query: 289 SLKKGKKFIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
S ++ L + SD L S S I + ++
Sbjct: 300 STGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAADS 359
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ + + + I N ++ + + Y + + L ++ E ++
Sbjct: 360 VE--FRQIQVYAEDALKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + ++ AG + + Y
Sbjct: 418 IDGDNLKFISAINNAGVNELVNLPMGQANVILQVTNKKSVK-------------DKYKVA 464
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
IK + D + + E++ + A +
Sbjct: 465 VIKREVEFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRLL 509
>gi|299148688|ref|ZP_07041750.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_23]
gi|298513449|gb|EFI37336.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_23]
Length = 713
Score = 81.1 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 49/525 (9%), Positives = 140/525 (26%), Gaps = 34/525 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + + V V + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ ++ G ++ ++ + ++ + V+ +++ + +GL + +
Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119
Query: 121 -------RSPLFHGKDNKFSHDVFVSRL-----AREGINEKEYIDHYTKMLSRTDVVGMF 168
++P + + F D+ L E +Y + Y M +
Sbjct: 120 GVHPLLRQTPFQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQKT 179
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ R + + N + R + + + +
Sbjct: 180 LIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESEL 239
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ + ++ +I ++Q E+ + + +
Sbjct: 240 KDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATAQLATTTDDYTSFIR 299
Query: 289 SLKKGKKFIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
S+ ++ L + SD L S S I + ++
Sbjct: 300 SVGSEAPYVDLFYNKTAFPSDVVARLDSASVGAIYGPYYNGADNTINSFKIVAKAAAADS 359
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ + + + I N ++ + + Y + + L ++ E ++
Sbjct: 360 VE--FRQIQVYAEDALKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + ++ G + + Y
Sbjct: 418 IDGDNLKFISAINNTGVNELVNLPMGQANVILQVTNKKSVK-------------DKYKVA 464
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
IK + D + + E++ + A +
Sbjct: 465 VIKREVEFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRLL 509
>gi|294644737|ref|ZP_06722483.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|292639909|gb|EFF58181.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
Length = 696
Score = 81.1 bits (197), Expect = 5e-13, Method: Composition-based stats.
Identities = 51/525 (9%), Positives = 142/525 (27%), Gaps = 34/525 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
L+ IR S+ + I + + F I G + + + V V + + N +
Sbjct: 4 LQNIR--SKGPLLVIVIGLALFAF-IAGDAWKVMQPHQAHDVGEVNGDALSAQEYQNLVE 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA- 120
+ ++ G ++ ++ + ++ + V+ +++ + +GL + +
Sbjct: 61 EYTEVVKLMRGVTALNDE-QTNQVRDEVWRSYVNNKLIEKEAKALGLTVSAAEIQDILKA 119
Query: 121 -------RSPLFHGKDNKFSHDVFVSRL-----AREGINEKEYIDHYTKMLSRTDVVGMF 168
++P + + F D+ L E +Y + Y M +
Sbjct: 120 GVHPLLRQTPFQNPQTGNFDKDMLNKFLVEYAKMSESQMPAQYAEQYNNMYKYWSFIQKT 179
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ R + + N + R + + + +
Sbjct: 180 LIESRLAEKYQALVSKALLSNPVEAQDAFDARVNQYNVLMAGIPYSSVVDSTIVVKESEL 239
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ + ++ +I ++Q E+ + + ++ +
Sbjct: 240 KDLYNKKKEQFKQYQETRDIKYIDVQVTASAEDRAAIQKEVDEATEQLATTTEDYTSFIR 299
Query: 289 SLKKGKKFIQLAEEQGKSLSD--ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
S ++ L + SD L S S I + ++
Sbjct: 300 STGSEAPYVDLFYNKTAFPSDVVARLDSASVGTIYGPYYNGADNTINSFKIVAKAAAADS 359
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ V + + I N ++ + + Y + + L ++ E ++
Sbjct: 360 VE--FRQIQVYAEDAVKTKTLADSIYNAIKGGANFADLAKKYGQTGDANWLTSAQYEGAQ 417
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + ++ AG + + Y
Sbjct: 418 IDGDNLKFISAINNAGVNELVNLPMGQANVILQVTNKKSVK-------------DKYKVA 464
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
IK + D + + E++ + A +
Sbjct: 465 VIKREVEFSKETYNRAYNDFSQFIAANPSVEKMVANAEEAGYRLL 509
>gi|330818272|ref|YP_004361977.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia gladioli
BSR3]
gi|327370665|gb|AEA62021.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia gladioli
BSR3]
Length = 451
Score = 81.1 bits (197), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/215 (13%), Positives = 59/215 (27%), Gaps = 9/215 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + +R A+ + +L V + + V V +
Sbjct: 1 MKKSLRFAAIVSGLAAVMSLLSVTPAAAQALGSSGATLADEVVAVVNNGVITARELDQRV 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ Q+ V + L ++L+ +V Q +D G+E V +
Sbjct: 61 GLISRRLQQQKVPVPPPDE-----LRSQVLNQMVVERIQLQKAKDDGIEVSDATVQSTLQ 115
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
R +G + D + ++L G+ + L + + V
Sbjct: 116 RLAAANG----MTVDQYRAQLEALGVPWSTFSGDARNELILSRLREKEVDSKITVTDAEV 171
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ + +A P NA Q
Sbjct: 172 ASYIASQRGPNSGSQQDVRLEHIFVAAPQNAPQDQ 206
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 32/312 (10%), Positives = 93/312 (29%), Gaps = 12/312 (3%)
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
+ + I S ++ + I + V +++++ + + S Q+V+ +
Sbjct: 137 VPWSTFSGDARNELILSRLREKEVDSKITVTDAEVASYIASQRGPNSGSQQDVRLEHIFV 196
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
A + + ++ + L + + EK+ D G +
Sbjct: 197 AAPQNAPQDQIDIAQKKADGLLKQA-LASGADFEKLARNSSEAKDAKTGGDLGFKAPGSL 255
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD--RKLEEVLTDVKKDWKT 492
++ V + + +PDG + + + + V T V+
Sbjct: 256 PA-DVVQAVSQLRPGQVSPNLIRVPDGFEIVRLVDRRPASGTVGASPKIVQTHVRHILLR 314
Query: 493 V---KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
V K+ + + + + + G +F + + + +Q + +
Sbjct: 315 VGEGKSESQARQQLIDIRNQI-EAGGDFANFARTYSQD-GSASQGGDLGWISPGETVPEF 372
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSV 606
+ S + P+ Y + +V + + + + Q +
Sbjct: 373 ERAMSQLQDGQISQPVRTEYGYHLIQVLGRRDAEGSVQKQMDIARQAIGQRKAEQAYADW 432
Query: 607 IAYLKSQYSVTV 618
+ L+ V +
Sbjct: 433 LRELRDSSYVQI 444
>gi|89892936|ref|YP_516423.1| hypothetical protein DSY0190 [Desulfitobacterium hafniense Y51]
gi|219666202|ref|YP_002456637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfitobacterium
hafniense DCB-2]
gi|89332384|dbj|BAE81979.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536462|gb|ACL18201.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfitobacterium
hafniense DCB-2]
Length = 315
Score = 81.1 bits (197), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/309 (9%), Positives = 84/309 (27%), Gaps = 17/309 (5%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R + + L + + G S G V + + F
Sbjct: 1 MRSFRKG-----IIAALVLTLALTGCSS----AGGDQWAAKVNGETITEQDFAARVSNVQ 51
Query: 65 GMISQKIGFVVNSERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
G ++++ + + ++L+ +++ + Q + + L+ + + +
Sbjct: 52 KAYEGM-GMDFSTDQGKEALNQVKSQVLEAMIASRLVIQEAQRLKLDVNDPSILEQEKNI 110
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
G + L ++ + E E +++ T V + + +
Sbjct: 111 IQMVG-----DESQYQEWLKQQAMTEDEVKNYFALSAEITKDVTVTPEQEKTFFENNQEL 165
Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
E +I++ + E K+ + L +
Sbjct: 166 YGGKGEEVQARHILVETEDEAKAIIAQLDGGADFSELAKEKSTDTGSQSSGGYLGSFGKG 225
Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
+ E E + E LV ++ ++++K LA+
Sbjct: 226 KMVPEFEEAAFAQEVGTYTKTPVKSEFGYHIILVEDHKAATKADYEAVKSQVAEDALADA 285
Query: 303 QGKSLSDIS 311
+ +
Sbjct: 286 KAQKFGGYF 294
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 23/270 (8%), Positives = 81/270 (30%), Gaps = 9/270 (3%)
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ + Q+ + + + E + + ++ E + + + ++R K+
Sbjct: 40 EQDFAARVSNVQKAYEGMGMDFSTDQGKEALNQVKSQVLEAMIASRLVIQEAQRLKLDVN 99
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D +++ ++ + + + + + + + E
Sbjct: 100 DPSILEQEKNIIQMVGDESQYQEWLKQQAMTEDEVKNYFALSAEITKDVTV---TPEQEK 156
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+E+ ++ + E +A ++ + G +F ++ K + +
Sbjct: 157 TFFENNQELYGGKGEEVQARHILVETEDEAKAIIAQLD-GGADFSELAKEKSTDTGSQSS 215
Query: 534 INRMDNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
+ + K + F+ V P+++ Y + V + K + + S
Sbjct: 216 GGYLGSFGKGKMVPEFEEAAFAQEVGTYTKTPVKSEFGYHIILVEDHKAATKADYEAVKS 275
Query: 593 YLTQMMNKDL----LDSVIAYLKSQYSVTV 618
+ + D L+ + +
Sbjct: 276 QVAEDALADAKAQKFGGYFDELREKAKANI 305
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 37/221 (16%), Positives = 72/221 (32%), Gaps = 6/221 (2%)
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
V + + + V + + +A + E K + ++ ++
Sbjct: 95 KLDVNDPSILEQEKNIIQMVGDESQYQEWLKQQAMTEDEVKNYFALSAEITKDVTVTPEQ 154
Query: 253 LQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---- 307
+ +E N+E Y ++ + EA L G F +LA+E+
Sbjct: 155 EKTFFENNQELYGGKGEEVQARHILVETEDEAKAIIAQLDGGADFSELAKEKSTDTGSQS 214
Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
S LGSF K + ++ F+ + FGY I V + K + ++ V
Sbjct: 215 SGGYLGSFGKGKMV-PEFEEAAFAQEVGTYTKTPVKSEFGYHIILVEDHKAATKADYEAV 273
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
K +A ++K + L E E +
Sbjct: 274 KSQVAEDALADAKAQKFGGYFDELREKAKANIEYSEKYKPA 314
>gi|260912199|ref|ZP_05918751.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
str. F0295]
gi|260633633|gb|EEX51771.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
str. F0295]
Length = 713
Score = 81.1 bits (197), Expect = 6e-13, Method: Composition-based stats.
Identities = 48/577 (8%), Positives = 150/577 (25%), Gaps = 32/577 (5%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
+ V V +K+ F + I + G N + + + + V
Sbjct: 37 TRNNQRQQVGEVYGEKISVQEFQKMVDEYAEAIKMQQGQD-NLNDEQLNQVKDMVWNTYV 95
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
+++ +++GL + ++ G + FV+ + G + +
Sbjct: 96 QNKLVEKEAKELGLTVTDQEMQNILS-----QGTNPMLMQTPFVN--QQTGRFDASSLKK 148
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
+ + S + + + +++P A +
Sbjct: 149 FLAEYKNQQTANPQMAQQYESIYKYWTFIEKQLRTQLLAQKYQSLLAHCLLSNPVEAKMA 208
Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
E + + + S V E ++ +EL+ +++ E +
Sbjct: 209 FKEENEESQIQLAAFPYSSIEDSKVQVSESDLKAKYEELKPRFKQYVETRDIKYVDIQVD 268
Query: 275 LVFPNQKE-ADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
++ + K+ + A+ KS S +S +
Sbjct: 269 ASTADKAALRKQFADYTKELAEAADPADVVRKSTSLVSYLGLPVGKEAYPGDIAARLDSM 328
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
G + + + + + E ++ + A + +
Sbjct: 329 GVGSVYGPVENTQDNTLNLIKLVAKVQLPDSVEYRQIQVGGVTPEAAH----KTADSIYN 384
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
L G + ++++ + + + + + K+
Sbjct: 385 ALNNGADFEALAKKYGQTGEKT----WMTTRQYQMAPSMDKDTKDYINSLNTMGVNDIKN 440
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
T+A + + +Q+ + V VK++ + K + + +
Sbjct: 441 ITLAQGN---IILQVLNRKAMVTKYQAAV---VKRNVEFSKETYRTAYNKFSSFVSANPT 494
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLS 570
++ G + + + + + +F V + +
Sbjct: 495 AESVVKNAAKSGYRVQEAKDVTTAQHNLAGIRSTREALKWLFDANEGDVSPLYECGDNNH 554
Query: 571 YVVFKVTNSKV------GPVQEKDKFISYLTQMMNKD 601
++ + Q K+ + + + +
Sbjct: 555 LLLVVLDRINPIGYRSLNDPQVKEMVKAEVIRDKKAE 591
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/347 (12%), Positives = 101/347 (29%), Gaps = 19/347 (5%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
K AD + +L G F LA++ G++ + +++Y S+ +
Sbjct: 376 HKTADSIYNALNNGADFEALAKKYGQTGEKTWM--TTRQYQMAPSMDKDTKDYINSLNTM 433
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
V + ++ + + + + + E + Y + F++
Sbjct: 434 GVNDIKNITLAQGNIILQVLNRKAMVTKYQAAVVKRNVEFSKETYRTAYNKFSSFVSANP 493
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + + + + + +A I + L +F ++
Sbjct: 494 TAESVVKNAAKSGYRVQ--EAKDVTTAQHNLAGIRSTREALKWLFDANEGDVSPLYECGD 551
Query: 460 DGSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ + V + P R L + V VK + K AE++ +K G
Sbjct: 552 NNHLLLVVLDRINPIGYRSLNDPQVKEMVKAEVIRDKKAEQILAKL---------NGVTS 602
Query: 518 RDIGKNLGASLLTTNQINRMDNE----NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
+ G + NQ+ V + P++ +
Sbjct: 603 IAAAQAKGGVVTPVNQVTFASPVFLTATGASEPALSGAVAATAKGAFDKTPVKGNAGVYM 662
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
F+VT + PV+ K + + + L V +
Sbjct: 663 FQVTGRTMRPVKYNAKETELRLRQRAMQYAGNFMNQLYINGKVVDNR 709
>gi|89898918|ref|YP_521389.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
ferrireducens T118]
gi|121956453|sp|Q223E5|SURA_RHOFD RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|89343655|gb|ABD67858.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
ferrireducens T118]
Length = 459
Score = 80.7 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 52/465 (11%), Positives = 129/465 (27%), Gaps = 72/465 (15%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + + + + ++ L ++Q+ V+S+ L +++L+ L++ Q
Sbjct: 54 IVAVVNSEPITNNEVRAALQRVLQQLAQQGNPQVDSK-----TLVRQVLERLINEKAQLQ 108
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G+ AD + + N+ + RL +EG ++ + +
Sbjct: 109 LARESGIAADEAAIDQAEQNI----ARQNQLTVAELRRRLTQEGGVPGQFRNQLRDQILL 164
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
T + V A S + Q+ + +
Sbjct: 165 TRLREREVE---------------------------------PRARVSELEIDQFLREQQ 191
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ A + ++ +L V + ++++ + +A+ + + + V +
Sbjct: 192 SSTPAVQQINLAQVLVSVPDTATPVQVTALQARAQRALARARAGEDFVTLVREFSD---- 247
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
A ++ + LG + + P + L G+ + +
Sbjct: 248 ------------------ASDKASLANGGELGLRTADRYPPLFL--EATHNLAVGEISAL 287
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ G+ I V K + + + + + +L EF +
Sbjct: 288 VRSGAGFHILKVLEKKSAALPAMTVTQSRARHILLRVSPQLTESAARDKLNEFKKRVAAG 347
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
D + A V P + G
Sbjct: 348 QADFAALARDHSQ----DGSAAQGGDLGWANPGMFVPEFEAVMNSLTPGQISEPLVSRFG 403
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
++ ++ +E V+ K E S A +
Sbjct: 404 VHLIQLMERRQA--TLSPQEQREAVRAMLHEKKLDEAYISWAQDV 446
>gi|257125090|ref|YP_003163204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptotrichia
buccalis C-1013-b]
gi|257049029|gb|ACV38213.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptotrichia
buccalis C-1013-b]
Length = 608
Score = 80.7 bits (196), Expect = 6e-13, Method: Composition-based stats.
Identities = 65/628 (10%), Positives = 173/628 (27%), Gaps = 45/628 (7%)
Query: 5 IRKASRTW--VAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFIN 58
R + + I + + + LI G+ ++ +++ + +V K+ F
Sbjct: 3 FRSHKKGIQLASAIMMGIFGIGMLISGILFLKNNVFGALNHREVIATVNGIKIYRDDFER 62
Query: 59 S---WKQELGMISQKIGFVVNSERARSVGLD--------KKILDNLVSGATLDQFIEDIG 107
K EL I+Q+ + S + + +L +++ L +++G
Sbjct: 63 ESYSLKNELNEITQQKIQQLAQVGTNSGNIKSVPDDLVNEYVLQLIINKEILLSSAKNLG 122
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
++ V E + K +K F L G N + +
Sbjct: 123 IKVSGSDVNKEFEN----YRKQSKLGKKEFGEYLRSVGYNVSSFKQTIKDQKIIEKMREK 178
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS-NAVLTQWFEKYKDNYRA 226
+ + + +A +S ++ + + +
Sbjct: 179 IFSNDKITEEEIKKAYERNKYTQSFANQDFDDVKDQIKETMTQDKNIMILNSYLAKAKEK 238
Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
+ +++ K K + N E + E E+ + +T + E
Sbjct: 239 TKIVFKDKNFENMYTKVKAVVAQNGEYKYTNEAVNEQIINSVSQTQQGYSDKLVNELKTT 298
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ I + +D L + + + K D T +
Sbjct: 299 LKKNLDKFVKISEKAKAAGIKADPDLIGVDQLRDYSQKYYNYLIDSYKPDDATLQARFNA 358
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ N + + + + + +A E +K K A S D S
Sbjct: 359 KRDSYNTQNSIGGYVIGEEYQAGESDFEGAKKQADEIMKTTTKDNFAAKAKEFSKDPESA 418
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ + A + + G ++
Sbjct: 419 KNGGSLGET---------------ADLSQLVPEFANAVKNGKAGDIVGPIKTQFGYHIIY 463
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+S ++ + +V + + + ++V K L E + + + K
Sbjct: 464 --IQSKDPKNDNVAKVSHILITPTISEASKQKVIKKVQNLKAEIESKKVTWDNAEKQDKY 521
Query: 527 SLLTTNQINRMDNENKFFG----YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
+ + ++ + G + ++Q+F+ ++ + + Y + T+
Sbjct: 522 NFSVKERFKKLVKTDAIPGIGKNDELMNQIFALKIDGI--LERNDATGYYLIAKTSEIPF 579
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYL 610
+ + + + D + +
Sbjct: 580 AQATFENSKERVRLELAHEYADKQLDSI 607
>gi|262340880|ref|YP_003283735.1| peptidylprolyl isomerase [Blattabacterium sp. (Blattella germanica)
str. Bge]
gi|262272217|gb|ACY40125.1| peptidylprolyl isomerase [Blattabacterium sp. (Blattella germanica)
str. Bge]
Length = 697
Score = 80.7 bits (196), Expect = 7e-13, Method: Composition-based stats.
Identities = 67/608 (11%), Positives = 167/608 (27%), Gaps = 46/608 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
LE IRK TW+ +F+ + V F++ F S+ + V + F + ++++
Sbjct: 4 LEKIRK--NTWLIFLFIGISLVFFVLDPNILLKFFSENSNVIGKVNGDNISFKEYFDNFQ 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
E L + LV L Q +G+++ W I +
Sbjct: 62 FLKRF----------REGESDSSLKNDVWKLLVHEKVLTQQAMKLGIQSTKRDFWKAIEK 111
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+ K F + + + + K + + ++ +
Sbjct: 112 -QSIYSKIYDFQDEKGNMDIKKFQLYLKNLEKLSIPQAEEEKNIWNYEKKNILKKIVAKK 170
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIA-DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ +I + V + E K + Y+ YI +
Sbjct: 171 YVEMLMYGLNTSFIEAELNSRDKNYFSIIDYVFIPYSEIEKKYHPIKNYEIYDYIKKNKF 230
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ + + + + + + + + + + S + + F
Sbjct: 231 FYKTENLRNLSFVILRSHPSLDDEKNMDNKIRKLFQELKSSDHHSMIVSNQSERPFDS-- 288
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+F + L D + + G + + Y++A ++ K
Sbjct: 289 -------------NFYLKKNLPPILQDFVEKNNRIGSMFGPVKENNIYIMAKLTGKKMVH 335
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+ +A + K+ E +A + ++ + D
Sbjct: 336 NSVLF-----SHILISHKEAVRSSNQRSKKKAENIAKKIYNTVQKNPYQFDALVMKKSDD 390
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVF-GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
K+ KG ++ L ++ + Y ++I++ + +
Sbjct: 391 FIKNNKGNLGWMKYEEQNNLKKLDIFSSENKKGTIAFTETKFGYHILRIEDQKD--LKPV 448
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG-KNFRDIGKNLGASLLTTNQINRMD 538
+ +K + KT + + A Q + + + + + +
Sbjct: 449 YQFSIIIKTLVPSKKTEDLLHKNAVQFIKQNKNSNLNTLINNARIKKYETVFLETVKNYQ 508
Query: 539 NENKFFGYDGISQVF------SGPVEMVKCFPIENGLSYVVF--KVTNSKVGPVQEKDKF 590
+ ++ + K F N +VF K+ + K+
Sbjct: 509 WNIHGLNTELDKEIINWSYEKNRKEGDFKVFYTSNRDYIIVFLSKIQKKGYPIEEIKNNL 568
Query: 591 ISYLTQMM 598
I L
Sbjct: 569 IPLLINKK 576
>gi|110834907|ref|YP_693766.1| survival protein SurA [Alcanivorax borkumensis SK2]
gi|122070614|sp|Q0VMV4|SURA_ALCBS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|110648018|emb|CAL17494.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans
isomerase surA) [Alcanivorax borkumensis SK2]
Length = 435
Score = 80.7 bits (196), Expect = 7e-13, Method: Composition-based stats.
Identities = 62/495 (12%), Positives = 140/495 (28%), Gaps = 80/495 (16%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L +L + L+ + V V + S +K + +
Sbjct: 12 LLGLLAMAVLMIPVWSQAKVQMLDRIVAVVNDGAIMASELDERINTIALQFQEKGQQLPS 71
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
L +++LD ++ Q E G++ D + +A + S +
Sbjct: 72 PAI-----LREQVLDRMILERLQLQLAERAGIKVDEASLNEALAGIARQND----MSLED 122
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
F + L +G + ++ + + + + + V
Sbjct: 123 FAATLREDGYSWTQFREQIRQDMVISRLQQRSVASR------------------------ 158
Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
++ + ++ E R+ +IL V + + +IS +A
Sbjct: 159 ---------IQITDREVDRFLSSELGKQMFQEDFRLGHILIRVPSEARPQQISQARAKA- 208
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
KE E ++ ++ + +L LG
Sbjct: 209 ------------------------KEIIERLEAGSDFQQLAIALSDGPNALEGGDLGWRP 244
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK--PSFTVSFQEVKKDIANQ 374
P +L KKG+F+ + G+ I + + K V+ V+ +
Sbjct: 245 AAQWP--TLFAENAINLKKGEFSQPLRSGAGFHILKMIDRKGGAEKVVTQYHVRHVLIKA 302
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
+T A + + + +E A E + G KG+ V
Sbjct: 303 DALTSAEQAQQRAIRLHDEVAAGKRQFKETAAEFSDDPGSARNGGELGWVNKGEMVPE-- 360
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
F + P+ + V + ++++ + A E + + +
Sbjct: 361 ------FEQVMLNTPVGELSPVFESQFGWHFLRVDDIRDAD-MSTEFRRMQATQALQKRR 413
Query: 495 TAEEVSSKANQLVLE 509
EE+ + + E
Sbjct: 414 FEEELETWVQEKRSE 428
>gi|300114054|ref|YP_003760629.1| peptidylprolyl isomerase [Nitrosococcus watsonii C-113]
gi|299539991|gb|ADJ28308.1| Peptidylprolyl isomerase [Nitrosococcus watsonii C-113]
Length = 426
Score = 80.3 bits (195), Expect = 9e-13, Method: Composition-based stats.
Identities = 61/500 (12%), Positives = 144/500 (28%), Gaps = 84/500 (16%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ K+ + ++ + W + ++S V V V S + ++ + G
Sbjct: 1 MGKVLVAIVVL---FWTMGS-FATMSLDRIVAVVNEDIVLESELEQMVRTVQDQLAAQ-G 55
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ L++++L+ LV Q G++ + + R ++N
Sbjct: 56 TSLPPGYV----LERQVLERLVMEQLQLQLAARTGIQVGDETLNEALGRI----AQNNGL 107
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ F + L ++G + + ++ K L + + V
Sbjct: 108 TLSQFRNVLEQDGYDFPNFRENIRKELIISQLHKREVN---------------------- 145
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
S A + + K + +++IL V E S ++
Sbjct: 146 -----------DRVSVSKAEIDNFLATQKKHGNQDAQYHLAHILITVPEAA-----SPEQ 189
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
+Q K ++ T Q V + +A + L
Sbjct: 190 VQGAKAKAEQVLQQLREGTDFQKVAVTYSDGQQALE--------------------GGDL 229
Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
G +P +L + + G+ + +I G+ I + + +
Sbjct: 230 GWRKVGQLP--TLFVDVVPQLQVGEISKLIRSPSGFHIVKLLEYRGEGGQQLVTQTQARH 287
Query: 373 NQMRITK--ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+R + + ++V+ +L + + G E+++ G G+ +
Sbjct: 288 ILLRADELASEQEVQLRLSQLRQRILSGDDFSELAQAHSDDKASALKGGDLGWVSPGQMI 347
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
+ L +P G ++ + + K +
Sbjct: 348 PRFEEAMRSL-------EPGEISEPFKTQFGWHVVQVLDRRQENVTEEFN--RNRAKTEI 398
Query: 491 KTVKTAEEVSSKANQLVLEY 510
K EE+ + QL E
Sbjct: 399 HQRKVEEELENWLRQLRDEA 418
>gi|325852084|ref|ZP_08171167.1| hypothetical protein HMPREF9303_2299 [Prevotella denticola CRIS
18C-A]
gi|325484640|gb|EGC87556.1| hypothetical protein HMPREF9303_2299 [Prevotella denticola CRIS
18C-A]
Length = 715
Score = 80.3 bits (195), Expect = 9e-13, Method: Composition-based stats.
Identities = 64/617 (10%), Positives = 165/617 (26%), Gaps = 41/617 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFINS 59
L IR S+ + + + FL + + G + + +K+ +
Sbjct: 4 LGKIR--SKGGMLVAAIGLALFAFLAEEGFRSCNGIKGEARQQIGEILGEKISVQDYQKL 61
Query: 60 WKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ I + E + ++ LVS L E +GL +
Sbjct: 62 IDEYQSAIKFTMQRDNLTEEEL--NQVKDQVWQQLVSNRVLQADAEKVGLTVTEQEIQNV 119
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ LA+ ++ L + + L
Sbjct: 120 LNDGTNL--------------MLAQTPFVNQQTGRFDVNALKQFLDGYNKAKSEKSPQLD 165
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
Q Y+ + S + + K E + L
Sbjct: 166 QMQTVYDYWLFIEKNLRTQLLGQKYQALLASCVLSNKAEAKMAFKDNNEESQIQLASLAY 225
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
K+ I+I++++L+A+Y++ K + + F + + K+
Sbjct: 226 SSVKDADIKITDEDLKAKYDELKPAFRQNVETRD--IKFVDYQIKASTADRNAVVKEMNG 283
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
L ++ + ++ S S IP + + S + + D I N +
Sbjct: 284 LQKQLATAADPATVVSKSGSEIPYLGVPVSSKAYRQYPDIASRIDSLAVGTTGVTENKQD 343
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ + + K + + + ++
Sbjct: 344 NTLNIIRVLSKAQLPDSVQFRQIQVAANTPDEARAKADSIQKALAGGADFEALAKRYGQT 403
Query: 419 D---FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ + + + + +++ +A + + +Q+ +
Sbjct: 404 GEKVWFTGQQYEAAPSMSQDNRTYINALLSGEVNATQNIALAQGN---VILQVLDKKAMT 460
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
+ V+ + K T E ++ ++ V + + + G + + N I+
Sbjct: 461 TKTTAAVIKKLIDFSKA--TRNEAYNRFSEFVAK-NTTTTDLEKNASKYGYRVQSLNDIS 517
Query: 536 RMDNENKFF--GYDGISQVFSGPVEMVKC-FPIENGLSYVVFKVTNSKV------GPVQE 586
++ D + +F V + + +V + Q
Sbjct: 518 TAEHYVAGIHGTRDALKWLFEAKQGDVSQLYECGDNDHLLVIVLNAIHPQGFRAWDDAQV 577
Query: 587 KDKFISYLTQMMNKDLL 603
K+ + + +LL
Sbjct: 578 KEILKREVMKDKKAELL 594
>gi|283850614|ref|ZP_06367901.1| SurA domain protein [Desulfovibrio sp. FW1012B]
gi|283573857|gb|EFC21830.1| SurA domain protein [Desulfovibrio sp. FW1012B]
Length = 330
Score = 79.9 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/167 (12%), Positives = 56/167 (33%), Gaps = 7/167 (4%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + L+ + A + V V + + L G + +
Sbjct: 9 LMLVLLVALTTTAWATQLVDKVVAVVNGKLITMFDVNARLADLLQRTQ---GVSMRPDDP 65
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
++ L +++L+++++ ++Q + + + +I K N + FV+
Sbjct: 66 QAAELRRQVLESMINDILIEQEAARLKVSISETELDSQIDEIK----KKNNLTQQQFVAE 121
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
L +EG+ K++ + + ++G V +
Sbjct: 122 LNKEGMTLKDFRERMRLDSVKKRLLGFMVHRKVLVTDDEIRDYYEKN 168
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 15/136 (11%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+A+ L + + F D K + D + K + S P
Sbjct: 193 ATKKQADDLRAQITSGSLKFSDAAKKYSIGPGRDQGGDLGDVQAKDLAPPLRDALKSVPA 252
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGP---------------VQEKDKFISYLTQMMNKDL 602
V + +G + ++ T + P +D+ L + L
Sbjct: 253 GQVSPPVMLDGKAVLLVLRTGAASTPAPAAPAPTPAGGPSFEGARDQIQEMLYKQKFDKL 312
Query: 603 LDSVIAYLKSQYSVTV 618
I L+S+ + +
Sbjct: 313 FQEYIDNLRSKAVIEI 328
>gi|257470876|ref|ZP_05634966.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium ulcerans ATCC
49185]
gi|317065078|ref|ZP_07929563.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690754|gb|EFS27589.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 584
Score = 79.9 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 75/616 (12%), Positives = 183/616 (29%), Gaps = 50/616 (8%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDAL------FSVSGSSTVVSVGRQKVPFSSFI 57
IRK + K + ++ + ++ G L S S+ + K+
Sbjct: 9 AIRKFRKQ--MKPIIWLVTILMVLGGGYATLSSIIGSMSNGHSNYAFKLNGNKISKFEVE 66
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + S+ +G V+ + D +V+ + + + ++ +G V
Sbjct: 67 KTKATMIDGYSRYLGDKVDRSLIDIL-----AFDEVVNKNLTLEMADKLKVKVSNGDVND 121
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ + +++ + D F L +G + + L+ + G+ P++
Sbjct: 122 QYDKI-----ENSIGNRDQFKRMLQVQGYTKNTFKKELKDNLTVEQTLAKIQEGINPTDE 176
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+++ R S L+ + + + + +L
Sbjct: 177 EINKYYEDNLYTR-----------------FSGKPLSDVKNEVITDLKQTKGIEEYVLLL 219
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
D K K+E + E +A E+N+ + + +E K
Sbjct: 220 DKARKNMKLENVSQEYKAYVERNEMEEDGFAVSNIEMAKRTLNNLFITNGDRDKAR---- 275
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+L++E ++ ++ + + D +L K I S A +
Sbjct: 276 ELSKEYYRAQIKLAKIAIERGITVDETLPLDYKFEEYKKGLFENIKNSLNPSDAQLKEYF 335
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ + + + + + + + L T E + D P
Sbjct: 336 EKNKLVYDTFPSSDSYIAILKVDASAEDKAAAKAKAEELLKTLTPENFAEVAKKNSDGPS 395
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
G + + ++ +F T+ Y+ + + A+
Sbjct: 396 SPNGGDLGWFSKKDMVEPFQKAVFSGEVGKIYPQPVETIFGEHLIYIEDRKDDEERAKAS 455
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT--TNQIN 535
+ V V + +K AE + + + NF + K L + ++I+
Sbjct: 456 HILIV-PKVSEATINIKKAE-----IEAVKEKLANGTVNFETLSKENKDVLQSSLFSKID 509
Query: 536 RMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
+ +F P+ V+ IE+ + +FK TN + ++ +
Sbjct: 510 DTGYIPGLGYNEALTKLIFDAPLNKVQTALIEDK--FYIFKKTNEVKYKAADFNELKDRV 567
Query: 595 TQMMNKDLLDSVIAYL 610
+ L
Sbjct: 568 KDDYLNSKTQEELKKL 583
>gi|170699177|ref|ZP_02890230.1| SurA domain [Burkholderia ambifaria IOP40-10]
gi|170135902|gb|EDT04177.1| SurA domain [Burkholderia ambifaria IOP40-10]
Length = 452
Score = 79.5 bits (193), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/191 (13%), Positives = 53/191 (27%), Gaps = 9/191 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 39 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERI 93
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D V + R + N + + + +RL +G+ +
Sbjct: 94 QVQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRARLEAQGVPWSVFTSDARTE 149
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L + + V G + S I P+NA +
Sbjct: 150 LMLSKLREREVDGKITVSDAEVVNYIASQRGPSASQQQDLRFQHIFIKAPTNAPQAEIEV 209
Query: 219 KYKDNYRAPEY 229
K +
Sbjct: 210 AQKKAEALLQQ 220
>gi|323524758|ref|YP_004226911.1| SurA domain-containing protein [Burkholderia sp. CCGE1001]
gi|323381760|gb|ADX53851.1| SurA domain protein [Burkholderia sp. CCGE1001]
Length = 468
Score = 79.5 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/186 (12%), Positives = 56/186 (30%), Gaps = 9/186 (4%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
+ + V + ++Q+ + +++ L +++L+ +V
Sbjct: 53 GQTVDTIAAVVNNGVITRRELDERVNLITRRLNQQNAPIPPADQ-----LRQQVLNQMVL 107
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
Q ++ G+ D V + R + N S DV+ +R+ +G+ +
Sbjct: 108 ERIQLQKAKEDGINVDDAAVQKTLERL----AQANNLSLDVYRARIEAQGVPWATFTSDA 163
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
L+ + + V + + + + P NA T
Sbjct: 164 RTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHMEHIFLKAPLNAPQTD 223
Query: 216 WFEKYK 221
K
Sbjct: 224 IEAAQK 229
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 43/376 (11%), Positives = 96/376 (25%), Gaps = 13/376 (3%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ KE K +LA+ SL +
Sbjct: 92 PPADQLRQQVLNQMVLERIQLQKAKEDGINVDDAAVQKTLERLAQANNLSLDVYRARIEA 151
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ +D+ L + A V+N S D+ +
Sbjct: 152 QGVPWATFTSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHMEHI 211
Query: 377 ITKASEK--VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
KA + ++ AL + K+ + D A G +
Sbjct: 212 FLKAPLNAPQTDIEAAQKKAEALLAEAKGGANFGKLAKSNSQAPDAAKGGDMGYAAPSKL 271
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK--LEEVLTDVKKDWKT 492
+ + + DG + + + V T V+
Sbjct: 272 P-PEFVKAASALRPGEVNPEVIRTNDGFEVVRLVDRRAGQGTSSDAPKLVQTHVRHILLR 330
Query: 493 V---KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
V + + K ++ E G +F ++ + +
Sbjct: 331 VGDGMSEPQARQKLLEIKKEIQAGG-DFAKFAHTYSQDGSSSQG-GDLGWISPGETVPEF 388
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSV 606
+ + + P+ + Y + +V + Q+ D + Q +
Sbjct: 389 ERAMNTLQDGQISDPVRSEYGYHLIQVLERREAQGSIAQQMDLARQAIGQRKAEQAYADW 448
Query: 607 IAYLKSQYSVTVHDNL 622
+ L+ V V +L
Sbjct: 449 LRELRDTAYVEVKPDL 464
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 30/265 (11%), Positives = 81/265 (30%), Gaps = 7/265 (2%)
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
D+I ++ G T +I N + + ++++ + NQM + + + +
Sbjct: 57 DTIAAVVNNGVITRRELDERVNLITRRLNQQNAPIPPADQLRQQVLNQMVLERIQLQKAK 116
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+ + A+ +++ +++ + + + A + +
Sbjct: 117 EDGINVDDAAVQKTLERLAQANNLSLDV-----YRARIEAQGVPWATFTSDARTELTLSR 171
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV--KKDWKTVKTAEEVSSKAN 504
D V + D + P + + + K +T E + K
Sbjct: 172 LREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHMEHIFLKAPLNAPQTDIEAAQKKA 231
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
+ +L +K G NF + K+ + + + + + V
Sbjct: 232 EALLAEAKGGANFGKLAKSNSQAPDAAKGGDMGYAAPSKLPPEFVKAASALRPGEVNPEV 291
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDK 589
I + V ++ + + G D
Sbjct: 292 IRTNDGFEVVRLVDRRAGQGTSSDA 316
>gi|122070641|sp|Q145L3|SURA_BURXL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
Length = 450
Score = 79.5 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/177 (11%), Positives = 50/177 (28%), Gaps = 9/177 (5%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V + ++Q+ V ++ L +++L+
Sbjct: 31 SGSGGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQ-----LRQQVLN 85
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q ++ G+ D V + R N + DV+ SR+ +G+ +
Sbjct: 86 QMVLERIQLQKAKEDGITIDDATVQKTLERLAA----ANNLTLDVYRSRIEAQGVPWTTF 141
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
L+ + + V + + + + P
Sbjct: 142 TSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGLTSDLHLQHIFLKAP 198
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 27/246 (10%), Positives = 63/246 (25%), Gaps = 11/246 (4%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ + AL + EK+ + D + G + + +
Sbjct: 204 TDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSKLP-PEFVKAAS 262
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK--LEEVLTDVKKDWKTV---KTAEEV 499
+ DG + + + V T V+ V + +
Sbjct: 263 ALRPGEVNPDLIRTSDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMSEPQA 322
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
K ++ E + G +F ++ + + + S
Sbjct: 323 RQKLLEIKNEIAAGG-DFAKFAHTYSQDGSSSQGGDLGWISPGETVPEFERAMNSLQDGQ 381
Query: 560 VKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ P+ + Y + +V + Q+ D + Q + + L+ V
Sbjct: 382 I-SDPVRSEYGYHLIQVLGRRESEGSVAQQMDLARQAIGQRKAEQAYADWLRELRDTAYV 440
Query: 617 TVHDNL 622
V L
Sbjct: 441 EVKPTL 446
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 28/266 (10%), Positives = 76/266 (28%), Gaps = 9/266 (3%)
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
D+I ++ G T +I N + + ++++ + NQM + + + +
Sbjct: 39 DTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQLRQQVLNQMVLERIQLQKAK 98
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+ + + +++ ++ + + + + +
Sbjct: 99 EDGITIDDATVQKTLERLAAANNLTLDV-----YRSRIEAQGVPWTTFTSDARTELTLSR 153
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV---KKDWKTVKTAEEVSSKA 503
D V + D + P + L + + E KA
Sbjct: 154 LREKEVDSKVTVSDAEVANYIASQRGPNAGLTSDLHLQHIFLKAPLNASETDIEAAQRKA 213
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
L+ E K G NF + K+ + + + + + + V
Sbjct: 214 QALLAEA-KGGANFEKLAKSNSQAPDASKGGDTGFVSPSKLPPEFVKAASALRPGEVNPD 272
Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDK 589
I + + ++ + + G D
Sbjct: 273 LIRTSDGFEIVRLVDRRAGQGTSSDA 298
>gi|254251452|ref|ZP_04944770.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
AUO158]
gi|124894061|gb|EAY67941.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
AUO158]
Length = 454
Score = 79.5 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/198 (13%), Positives = 56/198 (28%), Gaps = 9/198 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V V + + Q+ V +++ L ++L+
Sbjct: 34 GSQGAQLADEVVAVVNNDVITGRELDQRVSLIARRLQQQNAPVPPADQ-----LRAQVLN 88
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q +D G+ D V + R + N + D + +RL +G+ +
Sbjct: 89 QMVLERIQVQKAKDDGIRIDDATVQATLQRL----AQANGMTLDQYRARLEAQGVPWNIF 144
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ L + + V + + I P+NA
Sbjct: 145 TNDARTELMLSKLREREVDSKITVSDAEVANYIASQRGPNAAQQQDLRFQHIFIKAPTNA 204
Query: 212 VLTQWFEKYKDNYRAPEY 229
T+ K +
Sbjct: 205 PQTEIEAAQKKAEALLQQ 222
>gi|172061669|ref|YP_001809321.1| SurA domain-containing protein [Burkholderia ambifaria MC40-6]
gi|171994186|gb|ACB65105.1| SurA domain protein [Burkholderia ambifaria MC40-6]
Length = 452
Score = 79.5 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/191 (13%), Positives = 53/191 (27%), Gaps = 9/191 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 39 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERI 93
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D V + R + N + + + +RL +G+ +
Sbjct: 94 QVQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRARLEAQGVPWSVFTSDARTE 149
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L + + V G + S I P+NA +
Sbjct: 150 LMLSKLREREVDGKITVSDAEVVNYIASQRGPSASQQQDLRFQHIFIKAPTNAPQAEIEV 209
Query: 219 KYKDNYRAPEY 229
K +
Sbjct: 210 AQKKAEALLQQ 220
>gi|298206782|ref|YP_003714961.1| peptidyl-prolyl cis-trans isomerase [Croceibacter atlanticus
HTCC2559]
gi|83849414|gb|EAP87282.1| peptidyl-prolyl cis-trans isomerase [Croceibacter atlanticus
HTCC2559]
Length = 652
Score = 79.5 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 69/660 (10%), Positives = 177/660 (26%), Gaps = 77/660 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
F + + + ++++ + V S F+ +++ L ++ + V+
Sbjct: 6 FLFVFCLLIAGNTIAQELDKQIIMTLDGEPVYASDFVRVYQKNLDLVQDESQKDVD---- 61
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L + + + GL + F N+F+ +
Sbjct: 62 -------EYLKLFIDYRLKLREAYEQGL-------DTTLKFQREFKTYRNQFARNFLTDN 107
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
E + ++ Y ++ + ++ P + L +K ++V+
Sbjct: 108 NVSEALVQEAYDRTV-NEVNASHILIRVNQNATPEDTLKAYSKIKDIREKAVNGRSFETL 166
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
DPS + ++ +Y + E + ++
Sbjct: 167 AKTYSEDPSAKKNGGELGWFTALKMVYAFEEQAYTVPVGDVSEPFRTRFGYHILKVNDRR 226
Query: 261 KEKYFSPEIR-----TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD----IS 311
+ VF + +E + +K+G+ F LA++ +
Sbjct: 227 ASAGEVEVAHIMVSPKPKDTVFNPKDRIEELYLKVKQGEDFGVLAKQFSDDRNSARREGK 286
Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
L F + FSL K G T +G+ I + + P SF E++ ++
Sbjct: 287 LDRFGSGKLNSEVFEKKAFSLTKAGQVTEPFETQYGWHIIKLIDRFP--IPSFNEMRGEL 344
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
++ + + + + E
Sbjct: 345 EKKVTKDSRANLISDALVAGLKDHYSIGDFSEAKSFFSAYVTKDVKDGNWAISDNSTLDQ 404
Query: 432 AIPYKEQLLFR----------------VFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ +F+ + G + + DG +
Sbjct: 405 PLFKLRDSVFKYRDFAKFIYNKQVNKGLSGDKNTAINNWLKEYVDGKVLAYHRDHLEQED 464
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN--------------FRDIG 521
V + +KA + L + +
Sbjct: 465 KEFSNIVSEYRDGLLLFDLMEMNIWNKAKKDTLGLKTYYETNKQNYLWDKRVNVTMAKVN 524
Query: 522 KNLGASLLT---TNQINRMDNENKFFGYDGISQVFS--------------GPVEMVKCFP 564
A + ++ +D +++ + ++ +FS ++
Sbjct: 525 NKTDAKKVRNLMKKGVSEVDVKSQINSDESMTTLFSNGTFNVEDEVLPKKLKIKQGISKV 584
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
E Y V + + + + + L + IA L+++YSV ++D+ +
Sbjct: 585 YEEDNYYTVVNIKDVLPAGPKTFKEAKGTIVSDYQDYLEKNWIAALRTKYSVNINDDTVN 644
>gi|238028597|ref|YP_002912828.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia glumae BGR1]
gi|237877791|gb|ACR30124.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia glumae BGR1]
Length = 451
Score = 79.5 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/211 (14%), Positives = 60/211 (28%), Gaps = 16/211 (7%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-------TVVSVGRQKVPFSSFINSWK 61
+T + L + ++ A+ GS+ V V +
Sbjct: 2 KKTLRFAAIVSGLVAAMSLLSVTPAVAQALGSNGATLADEVVAVVNNDVITGRELDQRVD 61
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ Q+ V + L ++L+ +V Q ++ G+ D V + R
Sbjct: 62 LIARRLRQQKAPVPPIDE-----LRMQVLNQMVLERIQVQKAKEDGIVVDDAMVQATLQR 116
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
N S D + +RL EG+ ++ L + + V +
Sbjct: 117 LAA----ANNMSLDQYRARLEAEGVPWNIFVSDARTELMLSRLREKEVDSKITVSDAEVA 172
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ + +A P NA
Sbjct: 173 SYIASQRGPNAGSQQDLRLEHIFVAAPQNAP 203
Score = 46.8 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 31/312 (9%), Positives = 88/312 (28%), Gaps = 12/312 (3%)
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
+ + + S ++ + I S V +++++ + S Q+++ +
Sbjct: 137 VPWNIFVSDARTELMLSRLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFV 196
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
A E + ++ E L + + E++ + D G +
Sbjct: 197 AAPQNAPETQIDAARKKAEGLLKQA-LAPGADFERLAKNNSEAKDAKSGGDLGFKPPGSL 255
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES--IPARDRKLEEVLTDVKKDWKT 492
++ V + +PDG + + + V T V+
Sbjct: 256 PA-DVVQAVAQLRPGQVNPALIRVPDGFEIVRLVDRRPAQGTSAASPKIVQTHVRHILLR 314
Query: 493 V---KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
V K+ + + + + + G +F + + + +
Sbjct: 315 VGEGKSEAQARQQLIDIRNK-VEAGGDFASFARTYSQDGSASQGGDLGWISPGETVPEFE 373
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSV 606
+ S + P+ Y + +V + + + + Q +
Sbjct: 374 RAMNSLQDGQISN-PVRTEYGYHLIQVLGRRDAEGSIQQQMDIARQAIGQRKAEQAYADW 432
Query: 607 IAYLKSQYSVTV 618
+ L+ V +
Sbjct: 433 LRELRDSSYVQI 444
>gi|171317315|ref|ZP_02906511.1| SurA domain [Burkholderia ambifaria MEX-5]
gi|171097514|gb|EDT42352.1| SurA domain [Burkholderia ambifaria MEX-5]
Length = 452
Score = 79.5 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/191 (13%), Positives = 53/191 (27%), Gaps = 9/191 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 39 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERI 93
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D V + R + N + + + +RL +G+ +
Sbjct: 94 QVQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRARLEAQGVPWSVFTSDARTE 149
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L + + V G + S I P+NA +
Sbjct: 150 LMLSKLREREVDGKITVSDAEVVNYIASQRGPSASQQQDLRFQHIFIKAPTNAPQAEIEV 209
Query: 219 KYKDNYRAPEY 229
K +
Sbjct: 210 AQKKAEALLQQ 220
>gi|297564584|ref|YP_003683556.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
DSM 9946]
gi|296849033|gb|ADH62048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
DSM 9946]
Length = 632
Score = 79.5 bits (193), Expect = 2e-12, Method: Composition-based stats.
Identities = 70/628 (11%), Positives = 145/628 (23%), Gaps = 66/628 (10%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
++A FLV + F + G + + S TV+ V + V + S+
Sbjct: 14 GFLALAFLVGATILFALQGGGNLSGNRSQGPTVMWVNGRPVSELELAR-------IQSRD 66
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
N + LD L+ ++ + Q + G V + G
Sbjct: 67 PLLSSNPQGLMKPLLDTFFLEQVILTKAVQQDSSR--IRVSGGEVRKALDDLKQRAGATT 124
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
K + + L + G + + D L V P+ + N
Sbjct: 125 K---EQYDQLLNQIGYTDSQLRDELRDSLKVQKRVEEIQKKATPTPEEVKFYFDLNKANY 181
Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
+ V + V ++ + + + E + S
Sbjct: 182 KTEDRVKARQIVVDDKKLADDL-------------------YAQLKAGADFVELAKKNSK 222
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
E S + +A + + +
Sbjct: 223 VAADQGGALGAETGKSEPGFVTRVIFPSEVADAVFKLKQGGLTAPIASGGRYYIVKVEEF 282
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
G +A+ + + + + + K
Sbjct: 283 KPGGDPNFEEVKDRVAEDVKKIKGDQALEAYLLELRKKTQVRFAENTTYKYENPVVAKVG 342
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ LG + + + + + + +
Sbjct: 343 ESEIKLPELTQLVFTNQQIPQLIQQGLGDLAVQFFMPQALEQLITREILVSEAKKINQPF 402
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
+ + + D D E +
Sbjct: 403 VGARDQIAREVQAYHTKDITVTDE---------------EVRKYYAENPASFTIPASAEV 447
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
K + +E +KA K GK D+ K G ++ ++N
Sbjct: 448 KGISFKKEDEAKAKAFREAALKGGK-LEDLAKANGGTVTDYGKVN-----PGTLPPVANR 501
Query: 551 QVF-------SGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMN 599
VF GP+ V + SY V V N + D+ +
Sbjct: 502 LVFLTKGNFPKGPLGEVSEVVKLDDGSYQVLIVNNRVAEKLKPFEEVADQAREQVLAQKR 561
Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ +A L+ Q V + + + L
Sbjct: 562 SKAAQAWVAELRKQTKVENN---LNKVL 586
>gi|91781822|ref|YP_557028.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
xenovorans LB400]
gi|91685776|gb|ABE28976.1| Putative peptidyl-prolyl cis-trans isomerase [Burkholderia
xenovorans LB400]
Length = 453
Score = 79.1 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/177 (11%), Positives = 50/177 (28%), Gaps = 9/177 (5%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V + ++Q+ V ++ L +++L+
Sbjct: 34 SGSGGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQ-----LRQQVLN 88
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q ++ G+ D V + R N + DV+ SR+ +G+ +
Sbjct: 89 QMVLERIQLQKAKEDGITIDDATVQKTLERLAA----ANNLTLDVYRSRIEAQGVPWTTF 144
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
L+ + + V + + + + P
Sbjct: 145 TSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGLTSDLHLQHIFLKAP 201
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 27/246 (10%), Positives = 63/246 (25%), Gaps = 11/246 (4%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ + AL + EK+ + D + G + + +
Sbjct: 207 TDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSKLP-PEFVKAAS 265
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK--LEEVLTDVKKDWKTV---KTAEEV 499
+ DG + + + V T V+ V + +
Sbjct: 266 ALRPGEVNPDLIRTSDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMSEPQA 325
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
K ++ E + G +F ++ + + + S
Sbjct: 326 RQKLLEIKNEIAAGG-DFAKFAHTYSQDGSSSQGGDLGWISPGETVPEFERAMNSLQDGQ 384
Query: 560 VKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ P+ + Y + +V + Q+ D + Q + + L+ V
Sbjct: 385 I-SDPVRSEYGYHLIQVLGRRESEGSVAQQMDLARQAIGQRKAEQAYADWLRELRDTAYV 443
Query: 617 TVHDNL 622
V L
Sbjct: 444 EVKPTL 449
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 28/266 (10%), Positives = 76/266 (28%), Gaps = 9/266 (3%)
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
D+I ++ G T +I N + + ++++ + NQM + + + +
Sbjct: 42 DTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQLRQQVLNQMVLERIQLQKAK 101
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+ + + +++ ++ + + + + +
Sbjct: 102 EDGITIDDATVQKTLERLAAANNLTLDV-----YRSRIEAQGVPWTTFTSDARTELTLSR 156
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV---KKDWKTVKTAEEVSSKA 503
D V + D + P + L + + E KA
Sbjct: 157 LREKEVDSKVTVSDAEVANYIASQRGPNAGLTSDLHLQHIFLKAPLNASETDIEAAQRKA 216
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
L+ E K G NF + K+ + + + + + + V
Sbjct: 217 QALLAEA-KGGANFEKLAKSNSQAPDASKGGDTGFVSPSKLPPEFVKAASALRPGEVNPD 275
Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDK 589
I + + ++ + + G D
Sbjct: 276 LIRTSDGFEIVRLVDRRAGQGTSSDA 301
>gi|115352813|ref|YP_774652.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria AMMD]
gi|115282801|gb|ABI88318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria AMMD]
Length = 452
Score = 79.1 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/191 (13%), Positives = 53/191 (27%), Gaps = 9/191 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 39 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLNQMVLERI 93
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D V + R + N + + + +RL +G+ +
Sbjct: 94 QVQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRARLEAQGVPWSVFTSDARTE 149
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L + + V G + S I P+NA +
Sbjct: 150 LMLSKLREREVDGKITVSDAEVVNYIASQRGPSAAQQQDLRFQHIFIKAPTNAPQAEIEV 209
Query: 219 KYKDNYRAPEY 229
K +
Sbjct: 210 AQKKAEALLQQ 220
>gi|229496996|ref|ZP_04390701.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
gi|229316098|gb|EEN82026.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
Length = 714
Score = 79.1 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 68/617 (11%), Positives = 164/617 (26%), Gaps = 42/617 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSF 56
L+ IR + + I + V + F+ + D L S ++ + + +K+ +
Sbjct: 4 LQKIRNRAG--LLIIVIGVALLAFI---VGDGLRSGGTLFQMSNNYALKIDGEKIKAEDY 58
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+Q G + E+ + L+ ++ + + L++ + +GL+ +
Sbjct: 59 HQRLQQLQEAAEAN-GNHLTDEQ--RMQLNNQLAEEYIQSIALEKEADALGLKVTPEELI 115
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+ V + A++ I++ + +
Sbjct: 116 ALVLGD------------GVSPAYQAQQFISQLGINPSDRNAVQTFLEQISDNQIAQLPA 163
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
Q + ++ V N R + P
Sbjct: 164 EQQGQMRMIKNSWDALLRSVRNERLGSKFNAIMTRSYAINKVDAQFLSDVPSRDVAVVRT 223
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ + ++DE++ Y K + T V + +
Sbjct: 224 PSTILADTTVRATDDEVREYYNKRPRMFIQKYPFTR---VEYINVAIRPSAKDYSDALAL 280
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG-SFGYVIAHVSN 355
+ SD S + + S L + ++ V A +
Sbjct: 281 MNKTRTSLLGASDASTITRNHSEAFAPEYYMSGQELRDIQLPSSLVEFIESSEVGAVNTP 340
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ + S +V + + + + + + +
Sbjct: 341 SIENDSYSLVKVMAKKSAPSGVQARIIVLDSLNATKADSIVGAINGGAAFADMAMRYSAD 400
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
P G + ++ +P + L L + V + + + I
Sbjct: 401 PQTKAQGGYIIFQDRMGMP--DTTLTEAMATMQKLDTLYKVPVGRAFTSTLGATKVIMQV 458
Query: 476 DRKLEEV-LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ + E + V +E S+ + GK+F ++ K A L +
Sbjct: 459 AKAMPEATKYKIAYINLPVTFSEGTFSEKYSTINNILASGKSFDEMAKEAEAKGLEVVRD 518
Query: 535 NRMDNENKFF-----GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-----V 584
R++ + + +S + V G + +V +V
Sbjct: 519 ARVEPTSINLANIPSSREAVSWLLKAKPGEVNEKVFRCGDANLVVATVKEQVPAGTQPFE 578
Query: 585 QEKDKFISYLTQMMNKD 601
K+ YLT D
Sbjct: 579 DVKEDIRDYLTMEKRGD 595
>gi|114778682|ref|ZP_01453494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mariprofundus
ferrooxydans PV-1]
gi|114551044|gb|EAU53606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mariprofundus
ferrooxydans PV-1]
Length = 570
Score = 79.1 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/471 (9%), Positives = 122/471 (25%), Gaps = 71/471 (15%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V + + S + L + Q + + + L+++ LD L+
Sbjct: 23 DSIAAVVNNEAITCSQVDQDAQIMLTQLHQSGSTFIPA----ASELNQRSLDGLIVKTLQ 78
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + L+ + I N + D + + ++G++ EY + + +
Sbjct: 79 KQEARKLELKVSDEELDDAIKNVAA----SNNLTPDQLKAAVEQQGMHYDEYRSNLREQI 134
Query: 160 SRTDVVGMFVGG--MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ +V + V + + +++ + + L + ++P+ L
Sbjct: 135 LKNKLVNVAVRSKIQVSEEAVQEYYRKYLEHPKPRREVKLAQLFLSLPSEPTPEQLAVTR 194
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+K ++ ++ + + ++ + + +++ S V Q+
Sbjct: 195 QKIRNIHQQLLAGKDFAQMVAIYSESPDRQQQGVMGWFMQGGVAQRFASALEMPVGQISD 254
Query: 278 PNQKEA---------DEAFQSLKKGKKFIQLAEEQ------------------------- 303
P + + + G + ++
Sbjct: 255 PIRSPSGFHILKVLAERWKDPQNTGVSYDEVHARHILLKVPSYADAATKAKIRQRAEAIS 314
Query: 304 ---------------------GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ LG F K + + K G+ + +
Sbjct: 315 HDLQGASDAQFAVRAKEDSQGPSAERGGDLGWFKKGAMVPAFEKAAFAM--KPGETSGPV 372
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ----MRITKASEKVKEDYKRLEEFLALG 398
FG+ I + + S Q + I + + +
Sbjct: 373 ESPFGFHIIRIVARRHIDPNSLQAHRDQIQQILTNVETQEQLPRWIASLRAEANIDIRKC 432
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
S E S + + +++Q F
Sbjct: 433 PSQASAQAIESGDSEAVQETQTDNQLKASLASWKSAWEKQDAKAYFSHYSN 483
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 13/191 (6%), Positives = 47/191 (24%), Gaps = 14/191 (7%)
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV--------KKDWKT 492
+ P+ + + +++ + +V +
Sbjct: 240 RFASALEMPVGQISDPIRSPSGFHILKVLAERWKDPQNTGVSYDEVHARHILLKVPSYAD 299
Query: 493 VKTAEEVSSKANQLVLEYS-KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
T ++ +A + + F K + +
Sbjct: 300 AATKAKIRQRAEAISHDLQGASDAQFAVRAKEDSQGPSAERGGDLGWFKKGAMVPAFEKA 359
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS----VI 607
F+ P+E+ + + ++ + + Q++ I
Sbjct: 360 AFAMKPGET-SGPVESPFGFHIIRIVARRHIDPNSLQAHRDQIQQILTNVETQEQLPRWI 418
Query: 608 AYLKSQYSVTV 618
A L+++ ++ +
Sbjct: 419 ASLRAEANIDI 429
>gi|107023645|ref|YP_621972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia AU 1054]
gi|116690730|ref|YP_836353.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia HI2424]
gi|170734072|ref|YP_001766019.1| SurA domain-containing protein [Burkholderia cenocepacia MC0-3]
gi|122070635|sp|Q1BTQ6|SURA_BURCA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|105893834|gb|ABF76999.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia AU 1054]
gi|116648819|gb|ABK09460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia HI2424]
gi|169817314|gb|ACA91897.1| SurA domain [Burkholderia cenocepacia MC0-3]
Length = 452
Score = 79.1 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 9/200 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V V + + Q+ V +++ L ++L+
Sbjct: 32 GSQGAQLADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLN 86
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q +D G+ D V + R + N + D + RL +G+ +
Sbjct: 87 QMVLERIQVQKAKDDGIRIDDATVQATLQRL----AQANGMTLDQYRGRLEAQGVPWSIF 142
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ L + + V G + + I P+NA
Sbjct: 143 TNDARTELMLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNA 202
Query: 212 VLTQWFEKYKDNYRAPEYKR 231
K + +
Sbjct: 203 PQADIEAAQKKADALLQQAK 222
>gi|296131722|ref|YP_003638969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola sp. JR]
gi|296030300|gb|ADG81068.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola potens
JR]
Length = 352
Score = 79.1 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 55/413 (13%), Positives = 128/413 (30%), Gaps = 65/413 (15%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ KI + L + F + + + G+ TV V +K+ + Q+
Sbjct: 2 SKFRKILGLALILVFAV------VVAGCGAKTVAEVNGEKITQEQLDKRVNKMKLAYEQQ 55
Query: 71 IGFVVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
G E+ + + + K+ LD ++ + Q E G+ V
Sbjct: 56 -GASFEGEQGKQMLEAIKKQTLDQMIDQLLIKQAAEKEGVAPSDAEVQKRFDEIKKRFK- 113
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
S F L E+E ++ + +
Sbjct: 114 ----SEKEFEDALKNYNYTEEELKEYIAQQAMTDALF----------------------- 146
Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
+ V + + +++E+ KD+++ PE + +IL
Sbjct: 147 -----------QKVTKDVKVTEEDMKKYYEERKDSFKEPEKIKARHIL------------ 183
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
++ + K E + + + + + + K+ + + G
Sbjct: 184 ----IKFDTANEKVGRKEEEAKKMAEELIAKLNNGADFAELAKEKSEDPGSKNDGGLLKD 239
Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
+ F++ + D+ F+L K + FGY I V + KP +++E K
Sbjct: 240 PMGSDYFARGVMVK-EFDDAAFALKKGEITKKPVKTQFGYHIIKVEDKKPEKQKTYEEAK 298
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
+ I + T+ E + + L++ + + + + P ++
Sbjct: 299 EQIKRDLPNTRKQEVFNKYIEGLKQKAKITNELTKNEPAASELPQGHPPINEN 351
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/286 (10%), Positives = 75/286 (26%), Gaps = 11/286 (3%)
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
+A+ +++ + I Q + + + E +
Sbjct: 43 KRVNKMKLAYEQQGASFEGEQGKQMLEAIKKQTLDQMIDQLLIKQAAEKEGVAPSDAEVQ 102
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ K + A K+ E Y Q
Sbjct: 103 KRFDEIKKRFKSEKEFEDALKNYNYTEEELKEYIAQQAMTDALFQKVTKDVKVTEEDMKK 162
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
Y + K +L + V EE + K + ++ G +F ++ K
Sbjct: 163 YYEERKDSFKEPEKIKARHILIKFDTANEKVGRKEEEAKKMAEELIAKLNNGADFAELAK 222
Query: 523 NLGASLLTT-------NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
+ + + + F+ + P++ Y + K
Sbjct: 223 EKSEDPGSKNDGGLLKDPMGSDYFARGVMVKEFDDAAFALKKGEITKKPVKTQFGYHIIK 282
Query: 576 VTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVT 617
V + K + ++ + + + +++ + I LK + +T
Sbjct: 283 VEDKKPEKQKTYEEAKEQIKRDLPNTRKQEVFNKYIEGLKQKAKIT 328
>gi|206559288|ref|YP_002230049.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia J2315]
gi|198035326|emb|CAR51201.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia J2315]
Length = 442
Score = 79.1 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/200 (13%), Positives = 57/200 (28%), Gaps = 9/200 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V V + + Q+ V +++ L ++L+
Sbjct: 22 GSQGAQLADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRGQVLN 76
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q +D G+ D V + R + N + D + +RL +G+ +
Sbjct: 77 QMVLERIQVQKAKDDGIRVDDATVQATLQRL----AQANGMTLDQYRARLEAQGVPWSIF 132
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ L+ + + V G + + I P+NA
Sbjct: 133 TNDARTELTLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNA 192
Query: 212 VLTQWFEKYKDNYRAPEYKR 231
K + +
Sbjct: 193 PQADIEAAQKKAEALLQQAK 212
>gi|82701654|ref|YP_411220.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
multiformis ATCC 25196]
gi|122070651|sp|Q2YBP3|SURA_NITMU RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|82409719|gb|ABB73828.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
multiformis ATCC 25196]
Length = 440
Score = 79.1 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 54/446 (12%), Positives = 115/446 (25%), Gaps = 64/446 (14%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
SR+ + FL +L I + V V + L +
Sbjct: 7 SRSPFSLPFLTLLA-GMAIAQQPAHSGVETIDHIVAVVNENVITRHELDEMLGAMLKQLQ 65
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
++ L+K++L+ ++ Q + GL + + R +
Sbjct: 66 KQGVQPPPPA-----VLEKQLLERIILNRVQLQLANETGLTVSDAELDQTLRRI----AQ 116
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
+NK S F LA +G++ ++ D + + V E
Sbjct: 117 ENKMSLQEFDRALAEDGVSFSKFRDEIRDEIILVRLKEREVSNRVSVTEGEVDHFLETQE 176
Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
+ H+ L + + + + K + E +
Sbjct: 177 DSPSQSDEYRIAHILIQVSEGADPLKRDAARQRAESALAKLKAGTEFAQVAAEFSDAPDA 236
Query: 249 SNDELQAEYEKNKEK---------------------------------------YFSPEI 269
L + +
Sbjct: 237 MEGGLLNWRPAAQLTKKFAEILTPMKPGEITGIIPSPNGFHILKLVERRNQDTVTTMIDQ 296
Query: 270 RTVEQLVFPN---------QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSK 317
++ + E + L G KF +LA+ + S LG S
Sbjct: 297 THARHILIKISELTSEADAHRRVTELKERLDNGSKFEELAKLHSEDASAPTGGDLGWISP 356
Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
++ K G+ + + FG+ + V + + ++ +R
Sbjct: 357 GDTV-PEFEQAMS-ALKPGEISSPVQSPFGWHLIQVIERRTQDVSQ-ERKRQSARQAIRA 413
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDE 403
KA +E +RL + + ++E
Sbjct: 414 RKAETAFQEWLQRLRDRAYVEYRLEE 439
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 12/194 (6%), Positives = 49/194 (25%), Gaps = 7/194 (3%)
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE--VLTDV 486
+ + P + P+G ++ ++ + + +
Sbjct: 243 NWRPAAQLTKKFAEILTPMKPGEITGIIPSPNGFHILKLVERRNQDTVTTMIDQTHARHI 302
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
+ + + + +L G F ++ K +
Sbjct: 303 LIKISELTSEADAHRRVTELKERLDN-GSKFEELAKLHSEDASAPTGGDLGWISPGDTVP 361
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLL 603
+ + + + P+++ + + +V + V + + + +
Sbjct: 362 EFEQAMSALKPGEISS-PVQSPFGWHLIQVIERRTQDVSQERKRQSARQAIRARKAETAF 420
Query: 604 DSVIAYLKSQYSVT 617
+ L+ + V
Sbjct: 421 QEWLQRLRDRAYVE 434
>gi|323701603|ref|ZP_08113275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
nigrificans DSM 574]
gi|323533376|gb|EGB23243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
nigrificans DSM 574]
Length = 341
Score = 79.1 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 56/173 (32%), Gaps = 3/173 (1%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLV 94
+ + V +V +++ + + Q+ G + S+ + + L+K +LD+L+
Sbjct: 24 SNNADVVATVNGKEITRAELDKQVNMTVEQYKQQ-GIDLTSKENKDMKAQLEKSVLDDLI 82
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
+ L Q E L V I GK+ F + ++ + + E
Sbjct: 83 TKTLLMQEAERQKLTPSKEEVDKSIKDIKATFGKEEDFKKALAEVKMTEQDVREDITFRL 142
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ L + ++ K + ++ + + +
Sbjct: 143 TYQKLVDKVTADVKAPTEAEIAKYYNEHKDQFGTPERLEVKHILFAFDGKVPN 195
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 6/131 (4%)
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF--GYDGIS 550
+T E A + E +++G++F + + L T +
Sbjct: 198 KRTEAEALQAAKLALAEITQKGRDFAAVAREKSDDLGTRENGGSYTVDKGAGTTDPAFEK 257
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSV 606
+ + P+++ Y + K+ + + KD+ + L +
Sbjct: 258 AAAALKPGEITKQPVKSAYGYHLIKLEKIEPATQKSLAEVKDQIAAQLESEAKQAKFSQF 317
Query: 607 IAYLKSQYSVT 617
+ LK + +
Sbjct: 318 VDELKKKAEID 328
>gi|325526673|gb|EGD04205.1| SurA domain-containing protein [Burkholderia sp. TJI49]
Length = 452
Score = 79.1 bits (192), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 9/191 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 39 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPTDQ-----LRAQVLNQMVLERI 93
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D V + R + N + D + +RL +G+ +
Sbjct: 94 QVQKAKDDGIRIDDATVQATLQRL----AQANGMTLDQYRARLESQGVPWSIFTADARTE 149
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L + + V G + + I P+NA T+
Sbjct: 150 LMLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNAPQTEIEA 209
Query: 219 KYKDNYRAPEY 229
K +
Sbjct: 210 AQKKAEALLQQ 220
>gi|254247257|ref|ZP_04940578.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia PC184]
gi|124872033|gb|EAY63749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia PC184]
Length = 454
Score = 78.7 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/200 (13%), Positives = 55/200 (27%), Gaps = 9/200 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V V + + Q+ V +++ L ++L+
Sbjct: 34 GSQGAQLADEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPADQ-----LRAQVLN 88
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q +D G+ D V + R + N + D + RL +G+ +
Sbjct: 89 QMVLERIQVQKAKDDGIRIDDATVQATLQRL----AQANGMTLDQYRGRLEAQGVPWSIF 144
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ L + + V G + + I P+NA
Sbjct: 145 TNDARTELMLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNA 204
Query: 212 VLTQWFEKYKDNYRAPEYKR 231
K + +
Sbjct: 205 PQADIEAAQKKADALLQQAK 224
>gi|282858536|ref|ZP_06267707.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
gi|282588661|gb|EFB93795.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010]
Length = 715
Score = 78.7 bits (191), Expect = 3e-12, Method: Composition-based stats.
Identities = 63/615 (10%), Positives = 167/615 (27%), Gaps = 33/615 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINS 59
L IR S+ + I + + + FL+ + + + V + +K+ F
Sbjct: 4 LGKIR--SKGALLMIVIGLGLLGFLVEEGARSCSGLKAEQHSQVGEILGEKISNQDFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
++ I + N + ++ LVS L+ + +GL + +
Sbjct: 62 IEEYQSAIKLTMQRD-NLSEEELNQVKDQVWQQLVSNRVLEADAKKVGLTVTEQEMQNVL 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
LA+ ++ L + + L
Sbjct: 121 NDGTN--------------PALAQTPFVNQQTGRFDVNALKQFIDSYNKAKAAKSPQLEQ 166
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Q+ Y+ + S + + K E + L
Sbjct: 167 MQSIYNYWLFVEKNLRSQLLAQKYQGLLASCVLSNKAEAKLAFKDNNEEAQIQLAALPYS 226
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
K+ ++I++++L+A+YE+ K + + V K + ++ K IQ
Sbjct: 227 SVKDADVKITDEDLKAKYEELKGAFRQTVETRDVKYVDVQIKASAADRNAIVKDMNNIQK 286
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
++ ++ S S IP + + S + + D I + N++ +
Sbjct: 287 QLASATDVASVA--SKSGSMIPYLGIPVSSKAYQQYPDIASKIDSLAVGTTGVIENVQDN 344
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + K+ + + V + ++
Sbjct: 345 TLNIIRVLSKEQLPDSIQFRQIQVVANTPDEAKAKADSIQKALAGGADFVAIAKRYGQTA 404
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+ + + + + +Q+ + + + +
Sbjct: 405 DKTWLTGQQYEGSASMGQDNRTFLMAILKGEVNATQNVALTQGNVILQVLDKKAMKTKTV 464
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
V +KK K + + + + + G S+ I ++
Sbjct: 465 AAV---IKKAIDFSKDTRAAAYNKFSEFVAKNTTLADIQKNAGKYGYSVKDLKGITTAEH 521
Query: 540 ENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKV------GPVQEKDKF 590
D + +F + + + + +V + + K+
Sbjct: 522 YVAGIRGTRDVLKWIFDAKQGDISPLYEVGDNDHMMVLALNGIHQQGYRPWDDAEVKEML 581
Query: 591 ISYLTQMMNKDLLDS 605
+ + ++L +
Sbjct: 582 KREVMKDKKAEMLMA 596
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 65/570 (11%), Positives = 145/570 (25%), Gaps = 33/570 (5%)
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE-DIGLEADHGRVWGEIAR 121
+L + + + E+ L + L++ L E + + ++ ++A
Sbjct: 163 QLEQMQSIYNYWLFVEKNLRSQLLAQKYQGLLASCVLSNKAEAKLAFKDNNEEAQIQLAA 222
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P KD +E + + + DV + V +
Sbjct: 223 LPYSSVKD-----ADVKITDEDLKAKYEELKGAFRQTVETRDVKYVDVQIKASAADRNAI 277
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
K + + + K Y K S +
Sbjct: 278 VKDMNNIQKQLASATDVASVASKSGSMIPYLGIPVSSKAYQQYPDIASKIDSLAVGTTGV 337
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTV-EQLVFPNQKEADEAFQSLKKGKKFIQLA 300
E + + + ++ ++ V + +AD ++L G F+ +A
Sbjct: 338 IENVQDNTLNIIRVLSKEQLPDSIQFRQIQVVANTPDEAKAKADSIQKALAGGADFVAIA 397
Query: 301 EEQGKSLSDISL-GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ G++ L G + + KG+ + + + +
Sbjct: 398 KRYGQTADKTWLTGQQYEGSASMGQDNRTFLMAILKGEVNATQNVALTQGNVILQVLDKK 457
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + + + + + D
Sbjct: 458 AMKTKTVAAVIKKAIDFSKDTRAAAYNKFSEFVAKNTTLADIQKNAGKYGYSVK-----D 512
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
G VA I +L +F + M + + R
Sbjct: 513 LKGITTAEHYVAGIRGTRDVLKWIFDAKQGDISPLYEVGDNDHMMVLALNGIHQQGYRPW 572
Query: 480 E--EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ EV +K++ K AE + +K G N + GA + T NQI
Sbjct: 573 DDAEVKEMLKREVMKDKKAEMLMAKLK---------GVNSIAAAQAKGAKVSTVNQITFA 623
Query: 538 DNE----NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
V + P++ VF V + + ++ +
Sbjct: 624 SPAFIQAVGSVEPALSGAVAATAQGQFSKAPVKGNAGVYVFHVVKKAMRAGSKFNE--TQ 681
Query: 594 LTQMMNKDLLD---SVIAYLKSQYSVTVHD 620
L Q + + + + L + V +
Sbjct: 682 LEQQSAQQAMQLVGNYMQDLVLKAHVVDNR 711
>gi|295675486|ref|YP_003604010.1| SurA domain protein [Burkholderia sp. CCGE1002]
gi|295435329|gb|ADG14499.1| SurA domain protein [Burkholderia sp. CCGE1002]
Length = 477
Score = 78.7 bits (191), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/207 (12%), Positives = 59/207 (28%), Gaps = 14/207 (6%)
Query: 20 VLFVPFL-IWGLSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
V F+ + + + TV V + ++Q+ V
Sbjct: 40 VAAASFVPVASVQAQALGGNSGQTVDTIAAVVNNGVITQRELDERVGLIAHRLNQQNAPV 99
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+++ L +++L +V Q ++ G+ D V + R + N
Sbjct: 100 PPTDQ-----LRQQVLTQMVLERIQLQKAKEDGINIDDAAVQRTLERL----AQANNMPL 150
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
++ +R+ +G+ + + L+ + + V
Sbjct: 151 AMYRARIEAQGVPWATFSNDARTELTLSRLREKEVDSKITVTDAEVANYIASQRGPGAGQ 210
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ ++ P NA T K
Sbjct: 211 TSDLHMQHIFVSAPLNAPETDIEAAQK 237
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/248 (8%), Positives = 62/248 (25%), Gaps = 10/248 (4%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ ++ L + K+ + D + +A + +
Sbjct: 230 TDIEAAQKKAQGLLAEAKGGADFGKLAKANSQAPDASKNGGDLGFLAPSKLPPEFVKAAS 289
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKES--IPARDRKLEEVLTDVKKDWKTV---KTAEEV 499
+ DG + ++ + V T V+ V ++ +
Sbjct: 290 TLRPGEISPDLIRTNDGFEIVRLVERRAGQGTSADAPKLVQTHVRHILLRVGDGQSEPQA 349
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
K + + + G +F ++ + + + + +
Sbjct: 350 RQKLIDIRNQIAAGG-DFAKFAHTYSQDGSSSQG-GDLGWISPGETVPEFERAMNALQDG 407
Query: 560 VKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
P+ + Y + +V + Q+ D + Q + + L+ V
Sbjct: 408 QISEPVRSEYGYHLIQVLGRRDAEGSIAQQMDLARQAIGQRKAEQAYADWLRELRDTAYV 467
Query: 617 TVHDNLIQ 624
V
Sbjct: 468 EVKPTTAN 475
>gi|134296902|ref|YP_001120637.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
vietnamiensis G4]
gi|134140059|gb|ABO55802.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
vietnamiensis G4]
Length = 452
Score = 78.7 bits (191), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/198 (13%), Positives = 54/198 (27%), Gaps = 9/198 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V V + + Q+ V +E+ L ++L+
Sbjct: 32 GSQGAQLTDEVVAVVNNDVITGRELDQRVGLIARRLQQQNAPVPPAEQ-----LRAQVLN 86
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q +D G+ D V + R + N + D + +RL +G+ +
Sbjct: 87 QMVLERIQVQKAKDDGIRIDDATVQSTLQRL----AQANGMTLDQYRARLEAQGVPWSVF 142
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
L + + V G + + I P+NA
Sbjct: 143 TSDARTELMLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNA 202
Query: 212 VLTQWFEKYKDNYRAPEY 229
K +
Sbjct: 203 PQADIEAAQKKAEALLQQ 220
>gi|307728470|ref|YP_003905694.1| SurA domain-containing protein [Burkholderia sp. CCGE1003]
gi|307583005|gb|ADN56403.1| SurA domain protein [Burkholderia sp. CCGE1003]
Length = 468
Score = 78.4 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/186 (12%), Positives = 56/186 (30%), Gaps = 9/186 (4%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
+ + V + ++Q+ V +++ L +++L+ +V
Sbjct: 53 GQTVDTIAAVVNNGVITRRELDERVGLIARRLNQQNAPVPPADQ-----LRQQVLNQMVL 107
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
Q +++G+ D V + R + N S D + +R+ +G+ +
Sbjct: 108 ERIQLQKAKEVGINIDDAAVQKTLERL----AQANNMSLDTYRARIEAQGVPWATFTSDA 163
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
L+ + + V + + + + P NA T
Sbjct: 164 RTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHMQHIFLKAPLNAPQTD 223
Query: 216 WFEKYK 221
K
Sbjct: 224 IEAAQK 229
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/376 (11%), Positives = 98/376 (26%), Gaps = 13/376 (3%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ KE K +LA+ SL +
Sbjct: 92 PPADQLRQQVLNQMVLERIQLQKAKEVGINIDDAAVQKTLERLAQANNMSLDTYRARIEA 151
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ +D+ L + A V+N S D+ Q
Sbjct: 152 QGVPWATFTSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHMQHI 211
Query: 377 ITKASEK--VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
KA + ++ AL + EK+ + D GK +
Sbjct: 212 FLKAPLNAPQTDIEAAQKKAEALLAEAKGGANFEKLAKSNSQAPDA-GKGGDMGYASPSK 270
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK--LEEVLTDVKKDWKT 492
+ + + DG + + + + T V+
Sbjct: 271 LPPEFVKAASSLRPGQVNPEVIRTNDGFEIVRLVDRRTGQGTSSDAPKLMQTHVRHILLR 330
Query: 493 V---KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
V + + K ++ E + G +F ++ + +
Sbjct: 331 VGDGMSEPQARQKLLEIKREIAAGG-DFAKFAHTYSQDGSSSQG-GDLGWISPGETVPEF 388
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSV 606
+ + + P+ + Y + +V + Q+ D + Q +
Sbjct: 389 ERAMNTLQDGQISDPVRSEYGYHLIQVLERREAQGSIAQQMDLARQAIGQRKAEQAYADW 448
Query: 607 IAYLKSQYSVTVHDNL 622
+ L+ V V +L
Sbjct: 449 LRELRDTAYVEVKPDL 464
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 31/265 (11%), Positives = 82/265 (30%), Gaps = 7/265 (2%)
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
D+I ++ G T +IA N + + ++++ + NQM + + + +
Sbjct: 57 DTIAAVVNNGVITRRELDERVGLIARRLNQQNAPVPPADQLRQQVLNQMVLERIQLQKAK 116
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+ + A+ +++ +++ + + + A + +
Sbjct: 117 EVGINIDDAAVQKTLERLAQANNMSLDT-----YRARIEAQGVPWATFTSDARTELTLSR 171
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV--KKDWKTVKTAEEVSSKAN 504
D V + D + P + + + K +T E + K
Sbjct: 172 LREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHMQHIFLKAPLNAPQTDIEAAQKKA 231
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
+ +L +K G NF + K+ + + + + S V
Sbjct: 232 EALLAEAKGGANFEKLAKSNSQAPDAGKGGDMGYASPSKLPPEFVKAASSLRPGQVNPEV 291
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDK 589
I + + ++ + + G D
Sbjct: 292 IRTNDGFEIVRLVDRRTGQGTSSDA 316
>gi|161523769|ref|YP_001578781.1| SurA domain-containing protein [Burkholderia multivorans ATCC
17616]
gi|189351470|ref|YP_001947098.1| peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC
17616]
gi|160341198|gb|ABX14284.1| SurA domain [Burkholderia multivorans ATCC 17616]
gi|189335492|dbj|BAG44562.1| peptidyl-prolyl cis-trans isomerase [Burkholderia multivorans ATCC
17616]
Length = 451
Score = 78.4 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 55/198 (27%), Gaps = 9/198 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V V + + Q+ V ++ L ++L+
Sbjct: 32 GSQGAQLADEVVAVVNNDVITGRELDQRVGLISRRLQQQNAPVPPIDQ-----LRAQVLN 86
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q +D G+ D V + R + N + D + SRL +G+ +
Sbjct: 87 QMVLERIQVQKAKDDGIRVDDATVQATLQRL----AQANGMTLDQYRSRLEAQGVPWSIF 142
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
L + + V + + + I P+NA
Sbjct: 143 TADARTELMLSKLREREVDSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNA 202
Query: 212 VLTQWFEKYKDNYRAPEY 229
TQ K +
Sbjct: 203 PQTQIEAAQKKAEALLQQ 220
>gi|296161011|ref|ZP_06843822.1| SurA domain protein [Burkholderia sp. Ch1-1]
gi|295888710|gb|EFG68517.1| SurA domain protein [Burkholderia sp. Ch1-1]
Length = 453
Score = 78.4 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/177 (11%), Positives = 50/177 (28%), Gaps = 9/177 (5%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V + ++Q+ V ++ L +++L+
Sbjct: 34 SGSSGQTVDTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQ-----LRQQVLN 88
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q ++ G+ D V + R N + DV+ SR+ +G+ +
Sbjct: 89 QMVLERIQLQKAKEDGINIDDATVQKTLERLAA----ANNLTLDVYRSRIEAQGVPWSTF 144
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
L+ + + V + + + + P
Sbjct: 145 TSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGLTSDLHLQHIFLKAP 201
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 44/376 (11%), Positives = 95/376 (25%), Gaps = 13/376 (3%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ KE K +LA +L +
Sbjct: 77 PPMDQLRQQVLNQMVLERIQLQKAKEDGINIDDATVQKTLERLAAANNLTLDVYRSRIEA 136
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ +D+ L + A V+N S + D+ Q
Sbjct: 137 QGVPWSTFTSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGLTSDLHLQHI 196
Query: 377 ITKASEKVKEDYKRLEEFLALG--TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
KA E + A + EK+ + D + G +
Sbjct: 197 FLKAPLNASETDIEAAQRKAQALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSKL 256
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK--LEEVLTDVKKDWKT 492
+ + + DG + + + V T V+
Sbjct: 257 P-PEFVKAASTLRPGEINPDLIRTNDGFEIVRLVDRRTGQGTSSDAPKLVQTHVRHILLR 315
Query: 493 V---KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
V + + K ++ E + G +F ++ + +
Sbjct: 316 VGDGMSEPQARQKLLEIKNEIAAGG-DFAKFAHTYSQDGSSSQGGDLGWISPGETVPEFE 374
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSV 606
+ S + P+ + Y + +V + Q+ D + Q +
Sbjct: 375 RAMNSLQDGQI-SDPVRSEYGYHLIQVLGRRESEGSVAQQMDLARQAIGQRKAEQAYADW 433
Query: 607 IAYLKSQYSVTVHDNL 622
+ L+ V V L
Sbjct: 434 LRELRDTAYVEVKPTL 449
Score = 47.9 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 27/265 (10%), Positives = 80/265 (30%), Gaps = 7/265 (2%)
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
D+I ++ G T +I N + + ++++ + NQM + + + +
Sbjct: 42 DTIAAVVNNGVITRRELDERMGLITRRLNQQNAPVPPMDQLRQQVLNQMVLERIQLQKAK 101
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+ + + +++ ++ + + + + + +
Sbjct: 102 EDGINIDDATVQKTLERLAAANNLTLDV-----YRSRIEAQGVPWSTFTSDARTELTLSR 156
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV--KKDWKTVKTAEEVSSKAN 504
D V + D + P + L + K +T E + +
Sbjct: 157 LREKEVDSKVTVSDAEVANYIASQRGPNAGLTSDLHLQHIFLKAPLNASETDIEAAQRKA 216
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
Q +L +K G NF + K+ + + + + + + +
Sbjct: 217 QALLAEAKGGANFEKLAKSNSQAPDASKGGDTGFVSPSKLPPEFVKAASTLRPGEINPDL 276
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDK 589
I + + ++ + + G D
Sbjct: 277 IRTNDGFEIVRLVDRRTGQGTSSDA 301
>gi|221200089|ref|ZP_03573132.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Burkholderia multivorans CGD2M]
gi|221206758|ref|ZP_03579770.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Burkholderia multivorans CGD2]
gi|221173413|gb|EEE05848.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Burkholderia multivorans CGD2]
gi|221180328|gb|EEE12732.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Burkholderia multivorans CGD2M]
Length = 453
Score = 78.4 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 55/198 (27%), Gaps = 9/198 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V V + + Q+ V ++ L ++L+
Sbjct: 34 GSQGAQLADEVVAVVNNDVITGRELDQRVGLISRRLQQQNAPVPPIDQ-----LRAQVLN 88
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q +D G+ D V + R + N + D + SRL +G+ +
Sbjct: 89 QMVLERIQVQKAKDDGIRVDDATVQATLQRL----AQANGMTLDQYRSRLEAQGVPWSIF 144
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
L + + V + + + I P+NA
Sbjct: 145 TADARTELMLSKLREREVDSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNA 204
Query: 212 VLTQWFEKYKDNYRAPEY 229
TQ K +
Sbjct: 205 PQTQIEAAQKKAEALLQQ 222
>gi|121596392|ref|YP_988288.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
gi|120608472|gb|ABM44212.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
Length = 471
Score = 78.4 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 9/162 (5%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
G + + V V + + + ++ + I+ + G V + L K
Sbjct: 55 AGATASNAPRQADYIVAVVNSEPITNNEVRQRTERVVQQIASQ-GGQVPPQEL----LAK 109
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++L+ L+ Q ++ G++ D V + N S D RLA +GI+
Sbjct: 110 EVLERLILEKIQVQQAKETGIKVDDYAVNQAEQSV----ARQNSISVDEMHRRLAADGIS 165
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
++ + + L + V + L
Sbjct: 166 KERFREELRNQLLALRLRERDVESRVRVSDLEVDQYLREQRQ 207
>gi|218665253|ref|YP_002427402.1| survival protein SurA [Acidithiobacillus ferrooxidans ATCC 23270]
gi|218517466|gb|ACK78052.1| survival protein SurA [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 436
Score = 78.4 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/421 (8%), Positives = 99/421 (23%), Gaps = 60/421 (14%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
+ + V V + + + + E L +++L ++
Sbjct: 26 NTQNLDKVVAVVNDNIITSMQLEQRVGAVRARLQTQNPNAMPPEDI----LRRQVLQQMI 81
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
Q G++ D + I+ + N + D LA +G + + +
Sbjct: 82 LQDIELQIAHRAGIKVDKATLDQAISNL----AQANHLTPDQLRQALANQGQSWERFTHD 137
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
+ ++ V + + L +P +P+ +
Sbjct: 138 LEDRILVDRLMQQEVENRVHIGPDEVKTFAQQLKEMGGVSFDLQQIFIPLPDNPTPDAVG 197
Query: 215 QWFEKYKDNYRAP-----------------------------------------EYKRIS 233
+ ++
Sbjct: 198 AARRDAEQARDHVLAGERFGRVATQVSSGRDALQGGRLGWIKAGELPPAVAQTLLQLKVG 257
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT--VEQLVFPNQKEADEAFQSLK 291
I + +++ E + + + + A + Q+L+
Sbjct: 258 EISPVIPGPTGFHIFKLLDVKHGQPTVTEVKTAMIVLRAGNSLQLQEAEARAQDIQQALQ 317
Query: 292 KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G +F +LA + + +G + +PD + + G + I
Sbjct: 318 SGTRFSELARSYSQDPRTAANGGEMGWVAPGQLPDS--LERTLLTLQPGGVSSPIRVGNA 375
Query: 348 YVIAHVSNIKPS---FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
I H + + + N++ + E + +
Sbjct: 376 IYILHSQAQRQQAVEEKQIMAAARMQLYNRIVHERMDEWQRRIRDGAYVEVLEPGLRSSD 435
Query: 405 S 405
+
Sbjct: 436 A 436
>gi|170691413|ref|ZP_02882578.1| SurA domain [Burkholderia graminis C4D1M]
gi|170143618|gb|EDT11781.1| SurA domain [Burkholderia graminis C4D1M]
Length = 453
Score = 78.4 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 44/139 (31%), Gaps = 9/139 (6%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
+ + V + ++Q+ + L +++L+ +V
Sbjct: 38 GQTVDTIAAVVNNGVITRRELEERVSLITRRLNQQ-NAPIPPAD----QLRQQVLNQMVL 92
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
Q ++ G+ D V + R + N S DV+ +R+ +G+ +
Sbjct: 93 ERIQLQKAKEDGINIDDAAVQKTLERL----AQANNLSLDVYRARIEAQGVPWTTFTSDA 148
Query: 156 TKMLSRTDVVGMFVGGMRP 174
L+ + + V
Sbjct: 149 RTELTLSRLREKEVDSKVT 167
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 27/245 (11%), Positives = 65/245 (26%), Gaps = 11/245 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ ++ AL + EK+ + D + G + + +
Sbjct: 208 DIEAAQKKAEALLAEAKGGANFEKLAKSNSQAPDASKGGDMGYAAPSKLP-PEFVKAASA 266
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRK--LEEVLTDVKKDWKTV---KTAEEVS 500
+ DG + + + V T V+ V + +
Sbjct: 267 LRPGQVNPEVIRTSDGFEVVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDGMSEPQAR 326
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
K ++ E + G +F ++ + + + S +
Sbjct: 327 QKLLEIRKEIAAGG-DFSKFASTYSQDGSSSQGGDLGWISPGETVPEFERAMNSLQDGQI 385
Query: 561 KCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P+ + Y + +V + Q+ D + Q + + L+ V
Sbjct: 386 -SDPVRSEYGYHLIQVLERREAQGSIAQQMDLARQAIGQRKAEQAYADWLRELRDTAYVE 444
Query: 618 VHDNL 622
V +L
Sbjct: 445 VKPDL 449
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 29/265 (10%), Positives = 80/265 (30%), Gaps = 7/265 (2%)
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
D+I ++ G T +I N + + ++++ + NQM + + + +
Sbjct: 42 DTIAAVVNNGVITRRELEERVSLITRRLNQQNAPIPPADQLRQQVLNQMVLERIQLQKAK 101
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+ + A+ +++ +++ + + + + +
Sbjct: 102 EDGINIDDAAVQKTLERLAQANNLSLDV-----YRARIEAQGVPWTTFTSDARTELTLSR 156
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV--KKDWKTVKTAEEVSSKAN 504
D V + D + P + L + K + E + K
Sbjct: 157 LREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHLEHILLKAPLNAPQPDIEAAQKKA 216
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
+ +L +K G NF + K+ + + + + + + V
Sbjct: 217 EALLAEAKGGANFEKLAKSNSQAPDASKGGDMGYAAPSKLPPEFVKAASALRPGQVNPEV 276
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDK 589
I + V ++ + + G D
Sbjct: 277 IRTSDGFEVVRLVDRRAGQGTSSDA 301
>gi|221211271|ref|ZP_03584250.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Burkholderia multivorans CGD1]
gi|221168632|gb|EEE01100.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Burkholderia multivorans CGD1]
Length = 453
Score = 78.4 bits (190), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 55/198 (27%), Gaps = 9/198 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V V + + Q+ V ++ L ++L+
Sbjct: 34 GSQGAQLADEVVAVVNNDVITGRELDQRVGLISRRLQQQNAPVPPIDQ-----LRAQVLN 88
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q +D G+ D V + R + N + D + SRL +G+ +
Sbjct: 89 QMVLERIQVQKAKDDGIRVDDATVQATLQRL----AQANGMTLDQYRSRLEAQGVPWSIF 144
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
L + + V + + + I P+NA
Sbjct: 145 TADARTELMLSKLREREVDSKITVSDAEVASYIASQRGPNASQQQDLRFQHIFIKAPTNA 204
Query: 212 VLTQWFEKYKDNYRAPEY 229
TQ K +
Sbjct: 205 PQTQIEAAQKKAEALLQQ 222
>gi|77165200|ref|YP_343725.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
ATCC 19707]
gi|254434050|ref|ZP_05047558.1| SurA N-terminal domain family [Nitrosococcus oceani AFC27]
gi|122070652|sp|Q3JAF1|SURA_NITOC RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|76883514|gb|ABA58195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus oceani
ATCC 19707]
gi|207090383|gb|EDZ67654.1| SurA N-terminal domain family [Nitrosococcus oceani AFC27]
Length = 426
Score = 78.0 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 63/494 (12%), Positives = 142/494 (28%), Gaps = 81/494 (16%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
V++ + L W + +++ V V V S + ++ + G +
Sbjct: 4 VLVTIFVLFWPIGS-FAAINLDRIVAVVNEDIVLESELEQMVRTVQDQLAAQ-GTSLPPG 61
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
L++++L+ LV Q G++ + + R +DN + F
Sbjct: 62 YV----LERQVLERLVMEQLQLQLAARTGIQVGDETLNEALGRI----AQDNGLTLSQFR 113
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
+ L ++G + + ++ K L + + V
Sbjct: 114 NVLEQDGYDFPAFRENIRKELIISQLHKREVN---------------------------- 145
Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
S A + + K +++IL V E S +++QA
Sbjct: 146 -----DRVSVSKAEIDNFLTNQKKRGNQDAQYHLAHILITVPEAA-----SPEQVQAAKA 195
Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
K ++ Q V + +A + LG
Sbjct: 196 KAEQVLQQLREGADFQKVAVTYSDGQQALE--------------------GGDLGWRKMG 235
Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
+P +L + + GD + +I G+ I + + + + +R
Sbjct: 236 QLP--TLFVDVVPQLQAGDISKLIRSPSGFHIVKLLDYRGEGQQQLVTQTQARHILLRAD 293
Query: 379 K--ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
+ + +V+ +L + + G E+++ G G+ +
Sbjct: 294 ELASEREVQLRLSQLRQRILSGDDFSELAQAHSDDKASALKGGDLGWVSPGQMIPRFEEA 353
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ L +P G ++ + + K + + K
Sbjct: 354 MRSL-------EPGEISEPFKTQFGWHVVQVLDRRQENMTEEFN--RNRAKMEIRQRKVE 404
Query: 497 EEVSSKANQLVLEY 510
EE+ + QL E
Sbjct: 405 EELENWLRQLRDEA 418
>gi|160901465|ref|YP_001567047.1| SurA domain-containing protein [Delftia acidovorans SPH-1]
gi|160367049|gb|ABX38662.1| SurA domain [Delftia acidovorans SPH-1]
Length = 475
Score = 78.0 bits (189), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 9/135 (6%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
S V V + V + + I+++ G + E L +++L+ L+
Sbjct: 68 SADYIVAVVNSEPVTNNEVRARMARVAQNIAEQ-GGQMPPEAL----LAREVLERLIVEK 122
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
Q +D GL D V + + N SRL EG+NEK++ + +
Sbjct: 123 AQLQEAKDTGLRVDDYAVDQALTNV----ARQNGLDKAGLQSRLRAEGVNEKQFREELRR 178
Query: 158 MLSRTDVVGMFVGGM 172
++ + V G
Sbjct: 179 QITLQRLRERDVDGR 193
Score = 46.8 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 16/200 (8%), Positives = 56/200 (28%), Gaps = 5/200 (2%)
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
G+ + + +L + G+ G ++ +++S + +
Sbjct: 271 GQGGGAMGMRPLDRYPELFTKAVGQTAQGGIVGPFRSGAGFHVLKVLEKSQAGMPSVVTQ 330
Query: 482 VLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
+ T + + + +F + + N +
Sbjct: 331 NHARHILLRIGDQMTEADAAKRLADYKRRVDSGQASFESLAREFSQDGSARNGGDLGWAS 390
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQM 597
F + QV + P+ + + ++ + P +++D + + +
Sbjct: 391 PGQFVPEF-EQVLNALQPGQVSDPLVSRFGVHLIQLIERRQAALTPREQRDMVRNVVRER 449
Query: 598 MNKDLLDSVIAYLKSQYSVT 617
+ + + L+ + V
Sbjct: 450 KLETDYQAWLQELRGRAYVE 469
>gi|313204350|ref|YP_004043007.1| ppic-type peptidyL-prolyl cis-trans isomerase [Paludibacter
propionicigenes WB4]
gi|312443666|gb|ADQ80022.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paludibacter
propionicigenes WB4]
Length = 647
Score = 78.0 bits (189), Expect = 5e-12, Method: Composition-based stats.
Identities = 69/660 (10%), Positives = 169/660 (25%), Gaps = 74/660 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ W LS F+ + ++++ + V S F + +
Sbjct: 5 VIAFLTFWALSVGSFAQTSDPVLMTINGKPVSKSEFEYIYN-----------KNNTNNSL 53
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
LD+ + + ++ + + G++ + +
Sbjct: 54 DKKTLDEYV-ELFINFKLKVEEAKKQGIDTTEAFISEL--SGYRSQLTRPYLTDPKVDEI 110
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L RE + + +L R + ++ N + +R EN S ++
Sbjct: 111 LLREAYERSKEDVDVSHILIRIPQNALPADTLKAWNEINTIWRRLEHENFSRVAKEISQD 170
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
++ + Y A SY I + + +
Sbjct: 171 ESAEKNSGRLGWISVFRTVYPFESAAYNTPVGSYSKPIRTAFGYHIVKVHARRKTLGDVL 230
Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFS 316
+ + L + D ++ L G+ F LA + + + L F
Sbjct: 231 VSHIMILTNKGDDFLNKRAKTTIDSLYRRLIAGEDFGALARKYSQDKTTSSKNGELPWFG 290
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-----KPSFTVSFQEVKKDI 371
+ + F+L G+ + I + G+ I + + + K
Sbjct: 291 SGRMV-PEFEKAAFALKNVGEISKPIQTNGGWHILKLLDKKGIASFDELKADLERKVKRD 349
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID--LPLVDFAGKDVKGKE 429
+ + + A +++ +K+ +
Sbjct: 350 DRSKSGQQVFLAKLRNEYNYKLIPASLNEFYKLAASKKLTDSTFIVEATKLNKPIFSFAS 409
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR------------ 477
+ + S + Y+ ++ + ++
Sbjct: 410 KNYSQVDFAKFLKENPVSEKSSPKEIIDEKLDEYVDQELLDYEDSQLENKYEDFRLLMQE 469
Query: 478 ----------KLEEVLTDVKKD---WKTVKTAEEVSSKANQLVLE----YSKEGKNFRDI 520
EV +D + + K + + K+ + +
Sbjct: 470 YHDGILLFEVSNREVWDKASRDTKGLTKYFNSHKADYKWEKPHFKGYVVLCKDKETLSEA 529
Query: 521 GKNLGASLLTT----------NQINRMDNENKFF----GYDGISQVFSGPVEMVKCFPIE 566
+ + S + I R E F Q+F + +
Sbjct: 530 KQIIKKSPKDSIEKFLRARLNEPIQRAKIEKGLFVQGENKVVDDQIFKSNDKYIPTAEYP 589
Query: 567 NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
YV K+ +K ++ +T + L + I L+ +Y V V N+++
Sbjct: 590 --YFYVSGKLLKTKP---EDFSDVRGLVTADYQEYLDKAWIKALREKYEVVVDQNVLKTV 644
>gi|187922682|ref|YP_001894324.1| SurA domain [Burkholderia phytofirmans PsJN]
gi|187713876|gb|ACD15100.1| SurA domain [Burkholderia phytofirmans PsJN]
Length = 453
Score = 78.0 bits (189), Expect = 5e-12, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 9/143 (6%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V + ++Q+ V ++ L +++L+
Sbjct: 34 GGSSGQTVDTIAAVVNNGVITRRELDERMSLITRRLNQQNAPVPPLDQ-----LRQQVLN 88
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q ++ + D V + R N S DV+ SR+ +G+ +
Sbjct: 89 QMVLERIQLQKAKEDNINIDDATVQKTLERLAA----ANNLSLDVYRSRIEAQGVPWSTF 144
Query: 152 IDHYTKMLSRTDVVGMFVGGMRP 174
L+ + + V
Sbjct: 145 TSDARTELTLSRLREKEVDSKVT 167
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 29/266 (10%), Positives = 77/266 (28%), Gaps = 9/266 (3%)
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
D+I ++ G T +I N + + ++++ + NQM + + + +
Sbjct: 42 DTIAAVVNNGVITRRELDERMSLITRRLNQQNAPVPPLDQLRQQVLNQMVLERIQLQKAK 101
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+ + + +++ ++ + + + + + +
Sbjct: 102 EDNINIDDATVQKTLERLAAANNLSLDV-----YRSRIEAQGVPWSTFTSDARTELTLSR 156
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV---KKDWKTVKTAEEVSSKA 503
D V + D + P + L + E KA
Sbjct: 157 LREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHLQHIFLKAPLNAPETDIEAAQQKA 216
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
L+ E K G NF + K+ + + + + + V + V
Sbjct: 217 QALLAEA-KGGANFDKLAKSNSQAPDASKGGDTGFVAPSKLPPEVVKAVSTMRPGEVNPD 275
Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDK 589
I + + ++ + + G D
Sbjct: 276 LIRTNDGFEIVRLVDRRAGQGTSSDA 301
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 44/372 (11%), Positives = 98/372 (26%), Gaps = 13/372 (3%)
Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
+ + +E++ KE + K +LA SL ++
Sbjct: 81 QLRQQVLNQMVLERIQLQKAKEDNINIDDATVQKTLERLAAANNLSLDVYRSRIEAQGVP 140
Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
+D+ L + A V+N S D+ Q KA
Sbjct: 141 WSTFTSDARTELTLSRLREKEVDSKVTVSDAEVANYIASQRGPNAGATSDLHLQHIFLKA 200
Query: 381 SEK--VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
+ ++ AL + +K+ + D + G + +
Sbjct: 201 PLNAPETDIEAAQQKAQALLAEAKGGANFDKLAKSNSQAPDASKGGDTGFVAPSKLP-PE 259
Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK--LEEVLTDVKKDWKTV--- 493
++ V + DG + + + V T V+ V
Sbjct: 260 VVKAVSTMRPGEVNPDLIRTNDGFEIVRLVDRRAGQGTSSDAPKLVQTHVRHILLRVGDG 319
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ + K ++ E + G +F ++ + + +
Sbjct: 320 MSEPQARQKLLEIKKEIAAGG-DFAKFAHTYSQDGSSSQG-GDLGWISPGETVPEFERAM 377
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYL 610
+ + P+ + Y + +V + Q+ D + Q + + L
Sbjct: 378 NNLQDGQISDPVRSEYGYHLIQVLGRRESEGSVSQQMDLARQAIGQRKAEQAYADWLREL 437
Query: 611 KSQYSVTVHDNL 622
+ V V L
Sbjct: 438 RDTAYVEVKPTL 449
>gi|258405810|ref|YP_003198552.1| SurA domain-containing protein [Desulfohalobium retbaense DSM 5692]
gi|257798037|gb|ACV68974.1| SurA domain protein [Desulfohalobium retbaense DSM 5692]
Length = 311
Score = 77.6 bits (188), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 46/154 (29%), Gaps = 6/154 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + + + + +R + K++L +V L
Sbjct: 27 DRIVAVVNGEIITLFELNQKADPVVERFRSQQPGSLTEDRIEE--IKKRVLQTMVDNMLL 84
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + +E + V I G + + LA EG++ + + + L
Sbjct: 85 RQEAERLEMEIEDAEVQDRIEEMKTQRG----WDDERLDQMLANEGLDRSSFEKNIREDL 140
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
R +VG V Q + +
Sbjct: 141 MRRRLVGAMVRRKVVVTNEEIQTFYKDNQEQFAQ 174
>gi|78067506|ref|YP_370275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
383]
gi|122070639|sp|Q39D35|SURA_BURS3 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|77968251|gb|ABB09631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
383]
Length = 452
Score = 77.6 bits (188), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/200 (12%), Positives = 54/200 (27%), Gaps = 9/200 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V V + + Q+ V +++ L ++L+
Sbjct: 32 GSQGAQLADEVVAVVNNDVITGRELDQRAGLIARRLQQQNAPVPPTDQ-----LRAQVLN 86
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+V Q +D G+ D V + R + N + + + RL +G+ +
Sbjct: 87 QMVLERIQVQKAKDDGIRIDDATVQSTLQRL----AQANGMTLEQYRGRLEAQGVPWSVF 142
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
L + + V G + + I P+NA
Sbjct: 143 TSDARTELMLSKLREREVDGKITVSDAEVANYIASQRGPNASQQQDLRFQHIFIKAPTNA 202
Query: 212 VLTQWFEKYKDNYRAPEYKR 231
K + +
Sbjct: 203 PQADIEAAQKKADALLQQAK 222
>gi|222112631|ref|YP_002554895.1| sura domain-containing protein [Acidovorax ebreus TPSY]
gi|221732075|gb|ACM34895.1| SurA domain protein [Acidovorax ebreus TPSY]
Length = 471
Score = 77.6 bits (188), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 9/162 (5%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
G + + V V + + + ++ + I+ + G V + L K
Sbjct: 55 AGATASNAPRQADYIVAVVNSEPITNNEVRQRTERVVQQIASQ-GGKVPPQEL----LAK 109
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++L+ L+ Q ++ G++ D V + N S D RLA +GI+
Sbjct: 110 EVLERLILEKIQVQQAKETGIKVDDYAVSQAEQSV----ARQNSISVDEMHRRLAADGIS 165
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
++ + + L + V + L
Sbjct: 166 KERFREELRNQLLALRLRERDVESRVRVSDLEVDQYLREQRQ 207
>gi|332703852|ref|ZP_08423940.1| SurA domain protein [Desulfovibrio africanus str. Walvis Bay]
gi|332554001|gb|EGJ51045.1| SurA domain protein [Desulfovibrio africanus str. Walvis Bay]
Length = 334
Score = 77.6 bits (188), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 8/177 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL-DKKILDNLVSGAT 98
V V Q + L +S G +N++ + + + KK+LD LV
Sbjct: 50 DRIVAVVNGQVITSYDLDRELAPYLMQLS---GRKLNAQDEQQLTVVRKKLLDRLVDDIL 106
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
L + + LE + V I + + N + + +L RE + +EY + +
Sbjct: 107 LLMEAKRLNLEVNDTEVENHIRQ----FRQSNSMTEEDLGRQLQRENMTREEYKRNIRES 162
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ R V+ V ++ + + + + L Q
Sbjct: 163 MLRHRVLSFMVRRKVLVTDEEILRYYDEHKSDYTQAKEVELGLILLPPNEDSDGLVQ 219
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 25/241 (10%), Positives = 70/241 (29%), Gaps = 12/241 (4%)
Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
K+L + L + ++R + D V+ + + + L R
Sbjct: 94 RKKLLDRLVDDILLLMEAKRLNLEVNDTE-VENHIRQFRQSNSMTEEDLGRQLQRENMTR 152
Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE------VSS 501
+ ++ ++ + ++ + D ++ + K D+ K E +
Sbjct: 153 EEYKRNIRESMLRHRVLSFMVRRKVLVTDEEILRYYDEHKSDYTQAKEVELGLILLPPNE 212
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
++ LV K +F + + + + + + +
Sbjct: 213 DSDGLVQRLGKAEISFEEAARKYSKGPGAQSGGSIGRLKWSELASQWREALAQIHPGEIS 272
Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK----DLLDSVIAYLKSQYSVT 617
+G + K+ G + D+ + Q + + LK++ V
Sbjct: 273 EPFSIDGNK-AILKLKAIIPGKERSLDEVREEIRQKLYDPKYAVQYAEYMQDLKTKAIVD 331
Query: 618 V 618
+
Sbjct: 332 I 332
>gi|56476034|ref|YP_157623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
aromaticum EbN1]
gi|56312077|emb|CAI06722.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
aromaticum EbN1]
Length = 454
Score = 77.2 bits (187), Expect = 8e-12, Method: Composition-based stats.
Identities = 48/445 (10%), Positives = 128/445 (28%), Gaps = 65/445 (14%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
+R+ S + ++ + L ++ + SV V + + +Q
Sbjct: 15 ALRRIS-SRLSLVLFAALSCATALFPAHAANPRSVEVDHIAAVVNNEVITARELRERVEQ 73
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+ ++++ G L++++L+ LV Q + L+ D + IAR
Sbjct: 74 AIHQLNRQ-GTPQPPADV----LERQLLERLVLERAQLQLARETSLQVDEATLERAIARI 128
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR-PSNLLLDQ 181
+ N+ + + L ++G++ + D+ + T + V ++ +D
Sbjct: 129 ----AESNRLTIAQLQAALEKDGVSWSRFRDNIRTEILLTRLREREVDNRIVVTDAEVDN 184
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ S + L + + + + + + + + +
Sbjct: 185 FLANNADALSGEEFELAHILIRVPEAATQQQMAGLVARAETAKQRLNSGDDFARVAASYS 244
Query: 242 KEKKIEISNDELQAEYEKNKEKY------------------------------------- 264
++ +
Sbjct: 245 DAPDAMNGGALGWRSRDRLPPLFAEAVRELSPGSVSPVLRSSAGLHIVKLLDRRGGAAAG 304
Query: 265 -FSPEIRTVEQLVFPNQKEADEA---------FQSLKKGKKFIQLAEEQGKSLS---DIS 311
E ++ + +++ + + G F +LA+ LS
Sbjct: 305 PQQLEQTRARHILIRTSEILNDSEAESRLLGLRERVVNGASFAELAKAHSADLSSAKGGD 364
Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
LG S + + K G+ + + FG+ + V + + +
Sbjct: 365 LGWLSPGDTVPE--FERTMNALKPGEVSAPVRSPFGWHLIQVEARRLQDVSD-ERKRNAA 421
Query: 372 ANQMRITKASEKVKEDYKRLEEFLA 396
N +R KA E ++ ++L +
Sbjct: 422 RNALRERKADEAFEDWLRQLRDRTY 446
>gi|302876603|ref|YP_003845236.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
cellulovorans 743B]
gi|307687277|ref|ZP_07629723.1| peptidylprolyl isomerase [Clostridium cellulovorans 743B]
gi|302579460|gb|ADL53472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
cellulovorans 743B]
Length = 342
Score = 77.2 bits (187), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/191 (14%), Positives = 57/191 (29%), Gaps = 4/191 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K+ + V + + V G + + V VG +K+ K +
Sbjct: 2 KSIKKLVTAALIGAMVVGATGCGFLEKTETNKAKEVVAKVGDEKITKGDVDEEIKYMIEQ 61
Query: 67 ISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR-S 122
+ G S G++++ L LV L Q+++D +E + + E+
Sbjct: 62 AKTQYGEDYASNEEAMKGINEQRKTTLSALVDLKLLLQYVKDNNIEINEDEMEAEVDNAY 121
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
+ F L G ++Y D + G ++ +D +
Sbjct: 122 KQARDQYGSGDDATFEKLLQDNGYTLEKYKDDIKNAYISSKAREAMSKGAEVTDADIDAS 181
Query: 183 KRFYFENRSVD 193
+
Sbjct: 182 FKKDEFLTQNA 192
>gi|30248886|ref|NP_840956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
europaea ATCC 19718]
gi|81722212|sp|Q82W17|SURA_NITEU RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|30138503|emb|CAD84793.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
europaea ATCC 19718]
Length = 448
Score = 76.8 bits (186), Expect = 9e-12, Method: Composition-based stats.
Identities = 57/511 (11%), Positives = 140/511 (27%), Gaps = 79/511 (15%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQEL 64
K + W+ + + S V V + + + +
Sbjct: 11 KFRKYWLIYAVFATMLAADVFA-QSSYSREDIKPIDRIVAVVNEEVITQQEINEVLQNTV 69
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ ++ N++ R L+K++L+ L+ Q ++IGL + + R
Sbjct: 70 QQLQRQ-----NTQLPRMEILEKQLLERLILKRIQLQRAKEIGLTVSDNDLDQTLRRI-- 122
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
+DN + D F L +EG + + + + + + V
Sbjct: 123 --IQDNHLTMDEFRQVLLQEGTDMNRFREEIRGEILMSRLKEQEVNSR------------ 168
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
+ + + + + ++ E RI++IL + E+
Sbjct: 169 ---------------------VNVTENEIDNFLQNQANSPAGNEEYRIAHILVQISEQMD 207
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
+ +I +A + A E+ + + +
Sbjct: 208 EAQIEARHKRA-------------------------ETAYESLRQGADFVRVSAEFSDAP 242
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
++ LG + + + G+ TPV+ G+ I + +
Sbjct: 243 DAMQGGELGWRPLGQLGSP--FTEMLVNMQPGEVTPVVRSPVGFHILKLLERRQQEQKVT 300
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
+ + + ++ ++ + + + + + K S D +
Sbjct: 301 IIEQTHAQHILIKVSELVSEEDAHQLINQLMERIHNGADFMDVAKAHSE-----DASASA 355
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+ + P V P G ++ I+ ++D +
Sbjct: 356 GGDLGWVSPGDTVPEFEQAMNALLPGQVSPPVRTPFGWHLIKVIE--RRSQDVSERQQRE 413
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
+ K V QL + E K
Sbjct: 414 AARHTIHARKADAIVQEWLQQLRDQAYVEYK 444
Score = 41.8 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 36/349 (10%), Positives = 88/349 (25%), Gaps = 15/349 (4%)
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
+ + + L + + + D L + D + +
Sbjct: 101 QRAKEIGLTVSDNDLDQTLRRIIQDNHLTMDEFRQVLLQEGTDMNRFREEIRGEILMSRL 160
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
V + V+ + Q A A V+ + E + E
Sbjct: 161 KEQEVNSRVNVTENEIDNFLQNQANSPAGNEEYRIAHILVQISEQMDEAQIEARHKRAET 220
Query: 405 SRR-----EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ V + D G+ + F + + V
Sbjct: 221 AYESLRQGADFVRVSAEFSDAPDAMQGGELGWRPLGQLGSPFTEMLVNMQPGEVTPVVRS 280
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT--VKTAEEVSSKANQLVLEYSKEGKNF 517
+ +++ E + T + +EE + + ++E G +F
Sbjct: 281 PVGFHILKLLERRQQEQKVTIIEQTHAQHILIKVSELVSEEDAHQLINQLMERIHNGADF 340
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
D+ K + + + Q + + P+ + + KV
Sbjct: 341 MDVAKAHSEDASASAGGDLGWVSPGDTVPEF-EQAMNALLPGQVSPPVRTPFGWHLIKVI 399
Query: 578 NSKVGPVQEKDKFISY---LTQMMNKDLLDSVIAYLKSQ----YSVTVH 619
+ V E+ + + + ++ + L+ Q Y V +
Sbjct: 400 ERRSQDVSERQQREAARHTIHARKADAIVQEWLQQLRDQAYVEYKVEDN 448
>gi|315186551|gb|EFU20310.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
thermophila DSM 6578]
Length = 336
Score = 76.8 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 56/346 (16%), Positives = 112/346 (32%), Gaps = 68/346 (19%)
Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE 104
V ++VP ++ + Q+ G V+ E + L +++LD L+ L Q +
Sbjct: 49 RVNGEEVPSKEVEREVQRYVAQY-QQYGMEVSPEEEQK--LREQVLDVLIGRLLLLQEAK 105
Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+GL D +V +I + L G S + F + LA+ G E+E+ + ++ V
Sbjct: 106 RMGLSVDQAQVDAQIEQYKLQSG-----SEETFKNILAQAGYTEEEFREELSRAFLLQQV 160
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
V V S+ ++++ + +
Sbjct: 161 VDEKVTKH---------------------------------LSVSDEEARAYYDENPEQF 187
Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
PE R +IL + K E + E
Sbjct: 188 EQPEQIRARHILIRLAPDASKEEEEAAYAKIH-------------------------EVQ 222
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
E + + E + + LG F K + + + + V+
Sbjct: 223 EKLNQGADFAELAKTYSEGPSAPNGGDLGFFGKGQMVPA--FEEAAFALEVNQVSDVVRT 280
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+G + V++ + + SF+EVK + + K+SE + +
Sbjct: 281 EYGLHLIQVTDRQEAGKASFEEVKDQLKEMLLQQKSSEAINALVEE 326
>gi|332531190|ref|ZP_08407103.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
ATCC 19624]
gi|332039297|gb|EGI75710.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
ATCC 19624]
Length = 447
Score = 76.8 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 51/473 (10%), Positives = 117/473 (24%), Gaps = 71/473 (15%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
S V V + + + + L ++ + L +++LD L++
Sbjct: 37 SADYIVAVVNSEPITNAQVNAEVARALRQLAAQRRPAP-----EGQALRRQVLDQLINER 91
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
Q ++GL+ D V + + ++G+ + +
Sbjct: 92 AQLQLAREMGLKIDEPSVDQAEQNVARQNQLTVTQLREQVQ---QQDGMTTQALRARLKE 148
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
L T + V S+A + Q+
Sbjct: 149 QLLLTRLREREVDAR---------------------------------VKVSDADVEQYL 175
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + P + I L A E + R EQ+
Sbjct: 176 SEQQQRNSNPASQLIHIAHI---------------LVAVPEDASATFQLESQRKAEQIAR 220
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
+++ + ++ A + LG + + P +L + G+
Sbjct: 221 RAREKGADFAALARELSDAADRA-------NGGQLGLRAGDRYP--ALFTNAVRTLAVGE 271
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
+ + G+ + + + + + + I A + +L +F
Sbjct: 272 ISEPVRSGAGFHVLKLIERRQPAPAPQTVTQSRARHILLIPSAQLSEAQARDKLNDFRRR 331
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
S D D + A+ V + P +
Sbjct: 332 IQSGDTDF----ATLARQNSQDGSAAQGGDLGWASPGMFVPEFENVMNQLAPGQISEPLI 387
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
G ++ ++ E V+ + K AE +
Sbjct: 388 SRFGVHLIQLLERRQA--TLNEREQRELVRNMLRERKMAEAYDNWIRDTRARA 438
>gi|255965590|gb|ACU45098.1| peptidyl-prolyl cis-trans isomerase [Pfiesteria piscicida]
Length = 190
Score = 76.8 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/172 (15%), Positives = 54/172 (31%), Gaps = 12/172 (6%)
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
P G Y+ ++KE + +E V + K AE + K
Sbjct: 26 GSVKRFETPQG-YIVAKLKEKNDSGLLPIEYARESVGTILRNEKKAELIRKKMT------ 78
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD--GISQVFSGPVEMVKCFPIENG 568
G ++ K+ G+S+LT N + + G + + F+ N
Sbjct: 79 ---GATLEEVAKSTGSSVLTANDVILGNTIMPNVGQEPKVVGTAFALATGKTSKLIDGNS 135
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+++ + + V I+ Q + LK + ++ +
Sbjct: 136 GVFIIRAKSVIEAPAVNAYTSQITQEMQTQQNNAQMRAYEALKDKATIKDNR 187
>gi|122070617|sp|Q5P7I9|SURA_AZOSE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
Length = 439
Score = 76.8 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 48/444 (10%), Positives = 128/444 (28%), Gaps = 65/444 (14%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
+R+ S + ++ + L ++ + SV V + + +Q
Sbjct: 1 MRRIS-SRLSLVLFAALSCATALFPAHAANPRSVEVDHIAAVVNNEVITARELRERVEQA 59
Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ ++++ G L++++L+ LV Q + L+ D + IAR
Sbjct: 60 IHQLNRQ-GTPQPPADV----LERQLLERLVLERAQLQLARETSLQVDEATLERAIARI- 113
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR-PSNLLLDQA 182
+ N+ + + L ++G++ + D+ + T + V ++ +D
Sbjct: 114 ---AESNRLTIAQLQAALEKDGVSWSRFRDNIRTEILLTRLREREVDNRIVVTDAEVDNF 170
Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
+ S + L + + + + + + + + +
Sbjct: 171 LANNADALSGEEFELAHILIRVPEAATQQQMAGLVARAETAKQRLNSGDDFARVAASYSD 230
Query: 243 EKKIEISNDELQAEYEKNKEKY-------------------------------------- 264
++ +
Sbjct: 231 APDAMNGGALGWRSRDRLPPLFAEAVRELSPGSVSPVLRSSAGLHIVKLLDRRGGAAAGP 290
Query: 265 FSPEIRTVEQLVFPNQKEADEA---------FQSLKKGKKFIQLAEEQGKSLS---DISL 312
E ++ + +++ + + G F +LA+ LS L
Sbjct: 291 QQLEQTRARHILIRTSEILNDSEAESRLLGLRERVVNGASFAELAKAHSADLSSAKGGDL 350
Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
G S + + K G+ + + FG+ + V + + +
Sbjct: 351 GWLSPGDTVPE--FERTMNALKPGEVSAPVRSPFGWHLIQVEARRLQDVSD-ERKRNAAR 407
Query: 373 NQMRITKASEKVKEDYKRLEEFLA 396
N +R KA E ++ ++L +
Sbjct: 408 NALRERKADEAFEDWLRQLRDRTY 431
>gi|258649127|ref|ZP_05736596.1| peptidyl-prolyl cis-trans isomerase [Prevotella tannerae ATCC
51259]
gi|260850781|gb|EEX70650.1| peptidyl-prolyl cis-trans isomerase [Prevotella tannerae ATCC
51259]
Length = 739
Score = 76.8 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 61/648 (9%), Positives = 161/648 (24%), Gaps = 33/648 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST--VVSVGRQKVPFSSFINS 59
L+ IR S+ + I + + F+ ++ ++ + V + + F N
Sbjct: 4 LQKIR--SKGKILMIIIGLGLFAFIAESGFQSITGLTNADKQKVGEAFGETLTIQDFQNR 61
Query: 60 WKQELG---MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+Q M Q+ G + +++ + V+ + + + G++ V
Sbjct: 62 VEQLSNIAKMQKQRAGQSDALTDQEQDQIREQVWSDFVNTSAIKHETDKAGIQVTDEDVQ 121
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+ + + + + + D +
Sbjct: 122 DALRTG---QAQSLQMMAQMGFANQQTGRFDVNALQDFLKNYDKNMAQLAQSGQQAYMEQ 178
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + Y E + + ++ + + ++ + N A
Sbjct: 179 YQMLRQIWEYTEGQLRNELLKMKFYTMLGQTFISNPISAKMDFDARNTLADVEVAAVPYT 238
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ K + +Y++ V + + +
Sbjct: 239 MVSDKDVKVTDEDLKAAYEQYKEQFVNPTKSVDLKVLDVTVEASAKDKADLTKEVNEVRQ 298
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
A ++ + S F + A S + + + +
Sbjct: 299 KLEAGGDPAAVVNASKTIFPYTTLAMSKNAFSSTPDIAAALDSMGV---GSVKPVYYNAQ 355
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ K A+ +R + K + ++ ++ ++ + +
Sbjct: 356 DNTINTLKLINKLQAADSVRYRMIAAVGKTPQESQTRADSILKALQGGAKFDDLAKRYNQ 415
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D E +P + + P V + VQI E
Sbjct: 416 PTDSIWMFSAQYEAPNVPDDQAKMINQINTLQPGYS---VISNAQGSIVVQILERKHIET 472
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ V VK + K + L ++ + G + +
Sbjct: 473 KYNVAV---VKCPLQFSKDTYNAALNKMNRFLSANRTIEAITKNAPREGYIVRDVPNYAQ 529
Query: 537 MD-----NENKFFGYDGISQVF-SGPVEMVKCFP--IENGLSYVVFKVTNSKV------G 582
+ D + +F V + +V VT
Sbjct: 530 SNQSIQEQIGGSRAKDAVRWLFDEAKAGEVSQLFECGRSNDHLLVLGVTAVNDKGYLPWD 589
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
++ + Q +LL + + +K +I + L G+
Sbjct: 590 NKNVRELLTGLVKQQKKGELLMARLKGVKDMAQAKTQKGVILQMLQGQ 637
>gi|254429963|ref|ZP_05043670.1| SurA N-terminal domain family [Alcanivorax sp. DG881]
gi|196196132|gb|EDX91091.1| SurA N-terminal domain family [Alcanivorax sp. DG881]
Length = 442
Score = 76.8 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/396 (11%), Positives = 104/396 (26%), Gaps = 62/396 (15%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L +L + L+ V V + S +K G +
Sbjct: 19 LLGLLAMAVLMLPAWSQAKVQMLDRIVAVVNDGAIMASELDERINTIALQFQEK-GQQLP 77
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+ +++LD +V Q E G++ D + +A + N S +
Sbjct: 78 PPAV----MREQVLDRMVLERLQLQLAERGGIKVDDASLNQALAGI----ARQNGMSLED 129
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPSNLLLDQAKRFYFENRSVDY 194
F + L ++G + ++ + + + + + V + + +
Sbjct: 130 FAAALRQDGYDWPQFREQIREDMVISRLQQRSVASRIQVTDREVDRFLSSELGKQMFQED 189
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEK----------------------------------- 219
L + V A+ S +TQ K
Sbjct: 190 FHLGHILVRVPAEASPEDVTQARSKAESIVKKLNDGGDFQQLAVAESDGPKALEGGDLGS 249
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ + L E + + ++ V ++
Sbjct: 250 RPAAQWPTLFAENAINLQKGEISEPLRSGAGFHILKMIDRKGGSEKVVTQYQVRHVLIKT 309
Query: 280 QKEADEAFQSLKKGKKFIQLA--------------EEQGKSLSDISLGSFSKEYIPDVSL 325
+ + ++A ++ G + S LG +K +
Sbjct: 310 DALTSAEQAHKQAIRLHDEIAAGERQFSDTAAEFSDDPGSARSGGELGWVNKGEMV-PEF 368
Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
D + G+ +PV FG+ V +++ +
Sbjct: 369 ED-MMLNTPVGELSPVFESQFGWHFLRVDDVRDADM 403
>gi|209519024|ref|ZP_03267832.1| SurA domain protein [Burkholderia sp. H160]
gi|209500536|gb|EEA00584.1| SurA domain protein [Burkholderia sp. H160]
Length = 478
Score = 76.8 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/192 (11%), Positives = 53/192 (27%), Gaps = 9/192 (4%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
L + + V + ++Q+ V ++ L +++
Sbjct: 56 LGGNGGGQTVDTIAAVVNNGVITQRELDERAGLIAHRLNQQNAPVPPMDQ-----LRQQV 110
Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
L +V Q ++ G+ D V + R + N + ++ +R+ +G+
Sbjct: 111 LTQMVLERIQLQKAKEDGITIDDTAVERTLERL----AQANNMTLAMYRARIEAQGVPWT 166
Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
+ + L+ + + V + + P
Sbjct: 167 TFTNDARTELTLSRLREKEVDSKITVTDAEVANYIASQRGPGAGQTNDLHMQHIFVKAPL 226
Query: 210 NAVLTQWFEKYK 221
NA T K
Sbjct: 227 NAPETDIEAAQK 238
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/376 (11%), Positives = 99/376 (26%), Gaps = 12/376 (3%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ KE + +LA+ +L+ +
Sbjct: 101 PPMDQLRQQVLTQMVLERIQLQKAKEDGITIDDTAVERTLERLAQANNMTLAMYRARIEA 160
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ D+ L + A V+N S D+ Q
Sbjct: 161 QGVPWTTFTNDARTELTLSRLREKEVDSKITVTDAEVANYIASQRGPGAGQTNDLHMQHI 220
Query: 377 ITKASEKVKEDYKRLEEFLALG--TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
KA E + A G + EK+ + D + +A
Sbjct: 221 FVKAPLNAPETDIEAAQKKAEGLLAEAKGGADFEKLAKNNSQAPDASKNGGDLGFLAPSK 280
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK--LEEVLTDVKKDWKT 492
+ + G + DG + ++ + + V T V+
Sbjct: 281 LPPEFVKAASGLRPGEINPDLIRTNDGFEIVRLVERRAGQGNSSDAPKLVQTHVRHILLR 340
Query: 493 V---KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
V + + K + + + G+ F + ++ + +
Sbjct: 341 VGDGLSEPQARQKLLDIRSQIAAGGE-FEKFARTYSQDGSSSQG-GDLGWISPGETVPEF 398
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSV 606
+ + + P+ + Y + +V + Q+ D + Q +
Sbjct: 399 ERAMNSLQDNQISDPVRSEYGYHLIQVLGRRDAEGSIAQQMDLARQAIGQRKAEQAYADW 458
Query: 607 IAYLKSQYSVTVHDNL 622
+ L+ V V +
Sbjct: 459 LRELRDTAYVEVKPAV 474
>gi|319943017|ref|ZP_08017300.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
51599]
gi|319743559|gb|EFV95963.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
51599]
Length = 491
Score = 76.4 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/418 (11%), Positives = 103/418 (24%), Gaps = 59/418 (14%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + S G +Q G V L K++L+ ++
Sbjct: 85 DRIVAVVNQGVITESELQAQIHLIEGRAAQTPGAGVPPPD----ELRKQVLEQMILQLAQ 140
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+Q+ D GL+ V +A ++N S RL EG++ + +
Sbjct: 141 EQYAADYGLKPSDAEVDRAVADV----AQNNGLSTQQLTERLKDEGVSLDTFRRQLVAEI 196
Query: 160 SRTDVVGMFVGGMRP-----SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
+ + L ++ + + I+L + +
Sbjct: 197 VSARLRERETASNVSISEGEIDAELAKSGKVSQPEYDIRQILLKLPEGADQKEVARQKAR 256
Query: 215 QWFEKYKDNYRAPE------------------------------YKRISYILFDVHEKEK 244
K A + L
Sbjct: 257 ADELVAKARKGADFGALAQENSEAGDAATGGSMGWRKADDLPGLFADTVRKLKPGEISAP 316
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE----------AFQSLKKGK 294
+ + ++ + E+ ++ P
Sbjct: 317 VRSPAGFHILKLQDRRDGGATTVELTHARHILLPANSPETAAEAERRLSLFRRDIEAGKA 376
Query: 295 KFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F +LA+E S LG ++ SL G+ + + FG +
Sbjct: 377 DFAKLAKEFSSDGSAAKGGDLGWLYPGDTV-PEFEQAMKSLH-DGEISEPVQTQFGVHLV 434
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
V + + ++ ++R K E ++ + L + + +
Sbjct: 435 QVLGRRTDTESP-ERLRNAARAKLREAKGGEAYQQWLRELRDRTYVEYRQKSDAASTH 491
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 16/240 (6%), Positives = 61/240 (25%), Gaps = 5/240 (2%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + + + + + ++ + G LF
Sbjct: 246 DQKEVARQKARADELVAKARKGADFGALAQENSEAGDAATGGSMGWRKADDLPGLFADTV 305
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKAN 504
+ + + +++++ +E + + +TA E + +
Sbjct: 306 RKLKPGEISAPVRSPAGFHILKLQDRRDGGATTVELTHARHILLPANSPETAAEAERRLS 365
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
+ +F + K + + + + S + P
Sbjct: 366 LFRRDIEAGKADFAKLAKEFSSDGSAAKGGDLGWLYPGDTVPEFEQAMKSLHDGEI-SEP 424
Query: 565 IENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
++ + +V + P + ++ + L + + + L+ + V
Sbjct: 425 VQTQFGVHLVQVLGRRTDTESPERLRNAARAKLREAKGGEAYQQWLRELRDRTYVEYRQK 484
>gi|71275093|ref|ZP_00651380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
Dixon]
gi|71899689|ref|ZP_00681842.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
Ann-1]
gi|170731077|ref|YP_001776510.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
gi|71163902|gb|EAO13617.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
Dixon]
gi|71730557|gb|EAO32635.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
Ann-1]
gi|167965870|gb|ACA12880.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa M12]
Length = 468
Score = 76.4 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 11/164 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ + ++L V + ++ A V V V S +
Sbjct: 5 FSIVLSLLLAVSCVFLPVASARQQQHQPLDRIVAVVDDNVVLKSELDRAIHNVKSQYVGH 64
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
G + + L +++L+ L+ + G+ + I+ ++N
Sbjct: 65 EGQ-LPPDEV----LQRQVLERLILIKLQVARAQTNGIRVSDDELNQAISSI----AENN 115
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
K S D +L EGI+ E+ ++ + F
Sbjct: 116 KTSVDGLRQKLVAEGISFPEFRQSVRDEITVHHLRQGFAQSRIV 159
>gi|332295328|ref|YP_004437251.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermodesulfobium
narugense DSM 14796]
gi|332178431|gb|AEE14120.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermodesulfobium
narugense DSM 14796]
Length = 409
Score = 76.4 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 10/180 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K +L VL V + G V +V + + + + + Q
Sbjct: 41 IKFWLGVLIVVLAVSGAYTLFEF----QPVATVNGEPIRRYEYEKTLGDAVSYYEQYGIN 96
Query: 74 VVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ + + A L K++L++++ + Q + ++ V I +
Sbjct: 97 LYDPKEASFFLELKKQVLNHMIDNKIITQEAKKENIKITPSEVDARIDEIK-----KSFP 151
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
S F LA++ I+ E + + L+ + + S + + +
Sbjct: 152 SEKDFYEALAKQKISMGELRNIIEQQLTAEALFKKLTSNVTISEAEVKAYYEEHKKEFVQ 211
Score = 41.0 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 31/261 (11%), Positives = 84/261 (32%), Gaps = 8/261 (3%)
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
+ + K + E K++ + + + +++E I VD ++K
Sbjct: 89 YYEQYGINLYDPKEASFFLELKKQVLNHMIDNKIITQEAKKENIKITPSE-VDARIDEIK 147
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY--MWVQIKESIPARDRKLEEVLT 484
+ + E L + + + + + + + S EE
Sbjct: 148 KSFPSEKDFYEALAKQKISMGELRNIIEQQLTAEALFKKLTSNVTISEAEVKAYYEEHKK 207
Query: 485 D-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
+ V+ + ++ + + + E K+GK+F + K T ++ + +K
Sbjct: 208 EFVQPEQIHLRHILVKTEQEANNIYEQLKQGKDFATLAKEYSIDTPTKDKGGDLGWISKA 267
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS----YLTQMMN 599
+++ + PI++ Y + + ++ D+ + L +
Sbjct: 268 SLVPDLAKAADELKDNEFSKPIKSPFGYHIIEKLGTRPSKELSFDEVKNTLTAQLLRNKQ 327
Query: 600 KDLLDSVIAYLKSQYSVTVHD 620
L+ K Q +T +
Sbjct: 328 AQSLEKWFKEKKEQSKITPNP 348
>gi|71899114|ref|ZP_00681278.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
Ann-1]
gi|71731108|gb|EAO33175.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa
Ann-1]
Length = 463
Score = 76.4 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 11/164 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ + ++L V + ++ A V V V S +
Sbjct: 5 FSIVLSLLLAVSCVFLPVASARQQQHQPLDRIVAVVDDNVVLKSELDRAIHNVKSQYVGH 64
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
G + + L +++L+ L+ + G+ + I+ ++N
Sbjct: 65 EGQ-LPPDEV----LQRQVLERLILIKLQVARAQTNGIRVSDDELNQAISSI----AENN 115
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
K S D +L EGI+ E+ ++ + F
Sbjct: 116 KTSVDGLRQKLVAEGISFPEFRQSVRDEITVHHLRQGFAQSRIV 159
>gi|28199704|ref|NP_780018.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
gi|182682448|ref|YP_001830608.1| SurA domain-containing protein [Xylella fastidiosa M23]
gi|81724959|sp|Q87AJ0|SURA_XYLFT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|28057825|gb|AAO29667.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa Temecula1]
gi|182632558|gb|ACB93334.1| SurA domain [Xylella fastidiosa M23]
gi|307578730|gb|ADN62699.1| SurA domain-containing protein [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 463
Score = 76.4 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 11/164 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ + ++L V + ++ A V V V S +
Sbjct: 5 FSIVLSLLLAVSCVFLPVASARQQQHQPLDRIVAVVDDNVVLKSELDRAIHNVKSQYVGH 64
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
G + + L +++L+ L+ + G+ + I+ ++N
Sbjct: 65 EGQ-LPPDEV----LQRQVLERLILIKLQVARAQTNGIRVSDDELNQAISSI----AENN 115
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
K S D +L EGI+ E+ ++ + F
Sbjct: 116 KTSVDGLRQKLVAEGISFPEFRQSVRDEITVHHLRQGFAQSRIV 159
>gi|148381478|ref|YP_001256019.1| foldase protein PrsA [Clostridium botulinum A str. ATCC 3502]
gi|153933333|ref|YP_001385853.1| peptidylprolyl isomerase [Clostridium botulinum A str. ATCC 19397]
gi|153935960|ref|YP_001389260.1| peptidylprolyl isomerase [Clostridium botulinum A str. Hall]
gi|226712001|sp|A7FPK5|PRSA_CLOB1 RecName: Full=Foldase protein prsA; Flags: Precursor
gi|226712002|sp|A5I7R3|PRSA_CLOBH RecName: Full=Foldase protein prsA; Flags: Precursor
gi|148290962|emb|CAL85098.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
A str. ATCC 3502]
gi|152929377|gb|ABS34877.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
A str. ATCC 19397]
gi|152931874|gb|ABS37373.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
A str. Hall]
Length = 336
Score = 76.1 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 83/289 (28%), Gaps = 5/289 (1%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64
K+++ ++ + L + + F + + ST+ V +K+ S +Q L
Sbjct: 2 KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQVL 61
Query: 65 GMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
I + G + ++ IL+NL++ L Q +++ + + E +
Sbjct: 62 SQIKTQYGEEFEKSEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEADK 121
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
F L G ++ ++ + V+ ++ + +
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLRDQIVIEKVINEVTKDVKVEDKDAQK 181
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ +N H+ + + + + +D + + D
Sbjct: 182 YYNENQSMFTEKPNTMNVSHILVKTEDEAKKVKKRLDAKEDFAKVAKEVSQDPGSKDKGG 241
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
I S+ + K I + + +
Sbjct: 242 LLGDISYSDSNYDPTFMKAAIALKEGTISNPVHTQWGYHIIKVNSKKEY 290
>gi|88810558|ref|ZP_01125815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
Nb-231]
gi|88792188|gb|EAR23298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrococcus mobilis
Nb-231]
Length = 430
Score = 76.1 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/436 (10%), Positives = 106/436 (24%), Gaps = 60/436 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+T V + + + V F+ L + V V V S + +
Sbjct: 2 KTRVRSLIIFLALVVFIEAQTP-LLAAQVLDRIVAVVNDSVVLQSELKEELIIVRQQLQR 60
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L ++L+ L+ G+ D + + R +
Sbjct: 61 Q-----DMQLPDPRNLQHQVLEQLILKKLQLDAASRTGISVDDATLDAAVRRV----AEQ 111
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
N+ + F LA E I +++ D + + + +
Sbjct: 112 NQMTLSQFRDALAAEAIGWEDFRDKLRDQIIISRLRHQVMQSRINVTPQEIAQFVAQQRG 171
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK---- 245
L + V S + Q +K + +R E + L + +
Sbjct: 172 GQSAEYHLGHILVALPDAASPQTIAQARDKAERIHRQLEQEASFETLAASYSDSQTALQG 231
Query: 246 -------------------------------IEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
S + + + +
Sbjct: 232 GDLGWRKQGELPTLIAELISGLPVGKVTPVLRSPSGFHIFKLLARREGERHIITQTHARH 291
Query: 275 LVFPNQKEADEA---------FQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIP 321
++ + + ++ G F LA+ LG +
Sbjct: 292 ILIETNAVVSDRDARRRLESLRKRIENGDSFAALAKAHSDDSTSAFQGGDLGWVDPGRMV 351
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
+ + + + + + H +G+ I V N + T ++
Sbjct: 352 --ATFEQVMDSLQPDEISQPFHTRYGWHIVQVLNRRKQDTTEAYRREQAAQQIQNRKLQD 409
Query: 382 EKVKEDYKRLEEFLAL 397
E + EE
Sbjct: 410 ETQLWLRQLREEAYVD 425
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/368 (7%), Positives = 96/368 (26%), Gaps = 4/368 (1%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
+ + + + +EQL+ + + + + A + + ++L
Sbjct: 59 QRQDMQLPDPRNLQHQVLEQLILKKLQLDAASRTGISVDDATLDAAVRRVAEQNQMTLSQ 118
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
F + + + + +V+ + + V+ Q +
Sbjct: 119 FRDALAAEAIGWEDFRDKLRDQIIISRLRHQVMQSRINVTPQEIAQFVAQQRGGQSAEYH 178
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMD-EISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ + + + + + ++ + ++ D G
Sbjct: 179 LGHILVALPDAASPQTIAQARDKAERIHRQLEQEASFETLAASYSDSQTALQGGDLGWRK 238
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
+ L P+ K V + ++ + +
Sbjct: 239 QGELPTLIAELISGLPVGKVTPVLRSPSGFHIFKLLARREGERHIITQTHARHILIETNA 298
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
++ + + + + + + G +F + K + Q + + QV
Sbjct: 299 VVSDRDARRRLESLRKRIENGDSFAALAKAHSDDSTSAFQGGDLGWVDPGRMVATFEQVM 358
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYL 610
P + + +V N + E +++ + +D + L
Sbjct: 359 DSLQPDEISQPFHTRYGWHIVQVLNRRKQDTTEAYRREQAAQQIQNRKLQDETQLWLRQL 418
Query: 611 KSQYSVTV 618
+ + V +
Sbjct: 419 REEAYVDL 426
>gi|187932868|ref|YP_001884407.1| peptidylprolyl isomerase [Clostridium botulinum B str. Eklund 17B]
gi|187721021|gb|ACD22242.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
B str. Eklund 17B]
Length = 343
Score = 76.1 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/183 (12%), Positives = 63/183 (34%), Gaps = 4/183 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
+ VA + + L + + + ++ + +VG++K+ K
Sbjct: 2 NKIKKIVASVVVATLAFSIVGCKMIEKTPESIKNTVLATVGKEKITQGDLDRDLKSITES 61
Query: 67 ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ QK G S L + + L+ +V+ + ++ L + E+ +
Sbjct: 62 LKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSTELNLRPSDEELNKEVDEAV 121
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
++ + + + + + L + G E E+ ++ V V + ++ + +
Sbjct: 122 NYYKTAYQ-TEEQYNAFLEQNGFTEDEFKEYQKNQAVVRYVYQDMVKDVEVNDDDIQKYY 180
Query: 184 RFY 186
Sbjct: 181 DEN 183
>gi|15837440|ref|NP_298128.1| peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
gi|81788857|sp|Q9PF40|SURA_XYLFA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|9105742|gb|AAF83648.1|AE003923_6 peptidyl-prolyl cis-trans isomerase [Xylella fastidiosa 9a5c]
Length = 464
Score = 76.1 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 11/164 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ + ++L V + ++ A V V V S +
Sbjct: 5 FSIVLSLLLAVSCVFLPVASARQQQHQPLDRIVAVVDDNVVLKSELDRAIHNVKSQYVGH 64
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
G + + L +++L+ L+ + G+ + I+ ++N
Sbjct: 65 EGQ-LPPDEV----LQRQVLERLILIKLQVARAQTNGIRVSDDELNQAISSI----AENN 115
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
K S D +L EGI+ E+ ++ + F
Sbjct: 116 KTSVDGLRQKLVAEGISFPEFRQSVRDEITVHHLRQGFAQSRIV 159
>gi|32473571|ref|NP_866565.1| peptidyl-prolyl cis-trans isomerase [Rhodopirellula baltica SH 1]
gi|32398251|emb|CAD78346.1| probable peptidyl-prolyl cis-trans isomerase [Rhodopirellula
baltica SH 1]
Length = 626
Score = 75.7 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 66/606 (10%), Positives = 164/606 (27%), Gaps = 54/606 (8%)
Query: 20 VLFVPFL--IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+L F+ + G S + +S V V + S + Q+ G
Sbjct: 50 LLAAAFVAILSGFSTMRVEAAENSVVAVVNADPISRDSLATA-------SVQRYGTD--- 99
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+LDNL++ + Q + GL V EI R K + + +
Sbjct: 100 -----------VLDNLINRHLIMQECKRRGLGVTTEEVRTEINRV----AKKFGLNVESY 144
Query: 138 VSRL-AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ L I +Y + + + +F + +V
Sbjct: 145 LQLLNEERDITPDQYSREIIWPMLALRKLVADEVAVSQDEFNRAFVSQFGEAIKCRMVMV 204
Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
+ + + A + + K+ P + ++ + I +
Sbjct: 205 QDKSQATQLRAQAVAEPSSFARLAKEFSEDPTSASVGGLIPPIRRYMGDETIEEAAFALK 264
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ E + Q V + ++ + L +
Sbjct: 265 VDEVSELLPVGDHWMFLQAVRRMPASTPSPQAMPAIKDQIEDRIRDEKMKTAASQLFAQL 324
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+E V + + + AK +I+G + + S E +I ++
Sbjct: 325 QEQAQVVKILGAPQASAKHPGVAAIINGQQVSISNVAAECIKRHGESVLEG--EINRKLL 382
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
++ K+ + ++ + + D + G I
Sbjct: 383 TQALAKAGKKVTNEDLKAEIERAAISFGYMTDNGSADVQGWFDAVLEGGPGTREVYI--- 439
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ + L +D TV + + + + ++A
Sbjct: 440 -EDVVWPSVALKKLVEDETVLTQE---------DLQIGFESHYGPRAEVLACVLSDQRSA 489
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS-QVFSG 555
++V A + F + ++++ ++ + G + +VF
Sbjct: 490 QKVWEMARDNPTDQF-----FGQLANQYSIEPVSSSNFGKVPPIRQHGGQPSVEKEVFQM 544
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI----AYLK 611
+ I G Y++ + V + + L ++ + ++ + LK
Sbjct: 545 KPGDLSGI-IATGDKYIILRCQGFTEPVVSDFEAVQEELRSVLIEKKMNVAMSLKYDELK 603
Query: 612 SQYSVT 617
+
Sbjct: 604 QTAEID 609
>gi|288800871|ref|ZP_06406328.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 299
str. F0039]
gi|288332332|gb|EFC70813.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 299
str. F0039]
Length = 713
Score = 75.7 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 61/598 (10%), Positives = 149/598 (24%), Gaps = 52/598 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFINS 59
L IR S+ V + F+ + S + + V +K+ F
Sbjct: 4 LGKIR--SKGAVLVGVIGFALFAFIAEEAFRSWESSRNNDRQQLGKVLGKKLDVQEFQKL 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV---- 115
++ +I + G N + + + V +++ +E +GL +
Sbjct: 62 VEEYSEVIKMQQGKE-NLSEEEQTQIRDMVWNTFVQNKIIEKEVEALGLTVTDAEIQNVL 120
Query: 116 ----WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
+ +P + + +F + LA ++ +
Sbjct: 121 KAGTNQMLMGTPFVNQQTGRFDVNALKKFLAD--YKTQKSTNPQMAQQYENLYKYWVFIE 178
Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
LL Q + F N + + + SN L + D+ + +
Sbjct: 179 KNLRQQLLAQKYQALFANCLLSNPIEAKMAFKDNTEESNIQLASFPYSSIDDSKISVTES 238
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
+D ++ K + ++ + K E + K+ EA
Sbjct: 239 DLKNKYDELKERFKQPVETRNIKYIDIQVKPSTKDTEDLKKQ--FAGYAKDLSEATDVNN 296
Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
++ L G +++ + S G + V +F +
Sbjct: 297 VVRRSTSLVPFLGVAVTKNAY----------PQDIASKLDSMSVGQVSNVFESNFDNTLN 346
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + + ++ +A + Y+ L+ + + V
Sbjct: 347 IIKLVSKQQLPDSVQYRQIQVGGATAEQARKTADSVYQALKGGADFEVLAKKYGQTGDKV 406
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD----GSYMWVQ 467
+ A + V L Y+
Sbjct: 407 WLTTSQYQNAPSLDNDTKTLIETLNTLPANEVKNIAFTQGNIIVQVLNRSAFTNKYVAAV 466
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+K++I T E ++ A + G +
Sbjct: 467 VKKNIDFSQNTYTTAYNKFSSFVSANTTPEAITKNAAK------------------SGYT 508
Query: 528 LLTTNQINRMDNENKFF--GYDGISQVFSGPVEMV-KCFPIENGLSYVVFKVTNSKVG 582
+L + ++ D + +F V + + ++ +
Sbjct: 509 VLERKDVTTAEHYLAGIHGTRDALKWLFDAKEGEVSPMYQCGDNDHLLLVILDKINPK 566
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 70/567 (12%), Positives = 155/567 (27%), Gaps = 31/567 (5%)
Query: 66 MISQKIGFVVNSERARSVGLDKKILDN----LVSGATLDQFIE-DIGLEADHGRVWGEIA 120
++Q+ + L +++L L + L IE + + + ++A
Sbjct: 162 QMAQQYENLYKYWVFIEKNLRQQLLAQKYQALFANCLLSNPIEAKMAFKDNTEESNIQLA 221
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
P + + E + + + + ++ + + + D
Sbjct: 222 SFPY-----SSIDDSKISVTESDLKNKYDELKERFKQPVETRNIKYIDIQVKPSTKDTED 276
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K+F + + N V + + A + +S
Sbjct: 277 LKKQFAGYAKDLSEATDVNNVVRRSTSLVPFLGVAVTKNAYPQDIASKLDSMSVGQVSNV 336
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ N ++ + +I+ +K AD +Q+LK G F LA
Sbjct: 337 FESNFDNTLNIIKLVSKQQLPDSVQYRQIQVGGATAEQARKTADSVYQALKGGADFEVLA 396
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG-SFGYVIAHVSNIKPS 359
++ G++ + L + + P + + +F V + S
Sbjct: 397 KKYGQTGDKVWLTTSQYQNAPSLDNDTKTLIETLNTLPANEVKNIAFTQGNIIVQVLNRS 456
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ N + ++ + + + ++ V
Sbjct: 457 AFTNKYVAAVVKKNIDFSQNTYTTAYNKFSSFVSANTTPEAITKNAAKSGYTVLERKDVT 516
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR-- 477
A + G L +F + + + V + + P R
Sbjct: 517 TAEHYLAGIHGT-----RDALKWLFDAKEGEVSPMYQCGDNDHLLLVILDKINPKGYRAV 571
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+V VK + K AE++ +KA G N + K GA++ QI
Sbjct: 572 TDPQVKEIVKAEVIKDKKAEQLMAKAK---------GVNSINAAKAKGATISDVAQITFA 622
Query: 538 DNE----NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
V + P++ + +F+VT V K
Sbjct: 623 APVFIPATGASEPALSGAVSATAKGKFSAQPVKGNAAVYLFQVTGKATNNVPFKATEEEQ 682
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ S + L +VT +
Sbjct: 683 KLRQKYMQYAGSFMNELYINANVTDNR 709
>gi|254787082|ref|YP_003074511.1| chaperone SurA precursor [Teredinibacter turnerae T7901]
gi|237683982|gb|ACR11246.1| chaperone SurA precursor [Teredinibacter turnerae T7901]
Length = 428
Score = 75.7 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 52/158 (32%), Gaps = 9/158 (5%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
IF+ VL V L L VV V + + S + + + G +
Sbjct: 4 IFVSVLAVFALALSLPSYSQPQMLDRVVVIVDKSVITQSELDSRIANITQR-AAQAGMRL 62
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
L K++LD L+S + G+E + G I G + +
Sbjct: 63 PGRDV----LQKQVLDQLISETLQLNMAKRYGIEISDADLNGAIQNIKASRG----WDDE 114
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
F + E N E+ ++ + ++ V V G
Sbjct: 115 TFAREIHAEAANMHEFRENLRREITLQQVSQGVVRGRI 152
Score = 45.6 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 28/357 (7%), Positives = 98/357 (27%), Gaps = 15/357 (4%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
+QL+ + ++ + A + K+ +F++E + +
Sbjct: 74 DQLISETLQLNMAKRYGIEISDADLNGAIQNIKASRGWDDETFAREIHAEAANMHEFREN 133
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
++ + +S +F + + +
Sbjct: 134 LRREITLQQVSQGVVRGRIRISE---QEISNFLKSADAQFWISPDYRLGHILIPLPPAPS 190
Query: 393 EFLALGTSMDEISRREKIVS------IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+ + +++V+ + + G LF
Sbjct: 191 KEQTEAAEKRAEAIYQQLVNGANFGEMAIAESSGPSALKGGDLGFRKSADLPTLFAEIAP 250
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQ 505
+ A + +++ + + + + + + +++ +K Q
Sbjct: 251 TLEVGDVSKPARSQAGFHILKLMDKRGETKQVVSQAKVRHILLKPSAILPSDKARAKLEQ 310
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564
+ + K +F ++ K+ + + + E F + + + + P
Sbjct: 311 MREQIIKGEADFAELAKDNSEDIGSKMSGGDLGWAEPDTFVGEFAQTIRDTKIGEI-SEP 369
Query: 565 IENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + +V + + + E + K LT +D + ++ + V
Sbjct: 370 FQTQFGWHILEVLDRRQEDLTEEAIRAKARQVLTSRRFEDETQVWLQEMRDDAFIEV 426
>gi|291612516|ref|YP_003522673.1| SurA domain protein [Sideroxydans lithotrophicus ES-1]
gi|291582628|gb|ADE10286.1| SurA domain protein [Sideroxydans lithotrophicus ES-1]
Length = 433
Score = 75.7 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/212 (12%), Positives = 71/212 (33%), Gaps = 12/212 (5%)
Query: 15 KIFLVVLFVPF--LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
K + + F + + S V V + N M+ ++
Sbjct: 4 KKIFALFLIVFATVASAAESQKQATSLDRIDVIVNDDVITHRELENRVASVTKMLQRQK- 62
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ L++++L+ +++ L Q+ ++ GL D G++ I R ++
Sbjct: 63 ----TALPEKSILERQVLERMITEMLLAQYAKESGLRIDDGQLDKTILRIAQ---QNKFP 115
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP--SNLLLDQAKRFYFENR 190
F ++L R+G + E+ + + + V N + + +
Sbjct: 116 DVAAFRAKLTRDGTDYNEFREEIRNEIIAVRLREREVDSKLVISENDIDNYLNNQAHQEG 175
Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
+ + L++ V + + + ++ +
Sbjct: 176 KGEELQLSHILVVVPEQATADKIQSYRDRAEQ 207
>gi|251778310|ref|ZP_04821230.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243082625|gb|EES48515.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 343
Score = 75.7 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 63/183 (34%), Gaps = 4/183 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
+ VA + + L + + + ++ + +VG++K+ K
Sbjct: 2 NKIKKIVASVVVATLAFSIVGCKMIEKTPEAIKNTVLATVGKEKITQGDLDRDLKSITES 61
Query: 67 ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ QK G S L + + L+ +V+ + ++ L + ++ +
Sbjct: 62 LKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSAELNLRPSDEELNKDVDEAV 121
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
++ + + + + + L + G E E+ ++ V V + ++ + +
Sbjct: 122 SYYKTAYQ-TEEQYNTFLEQNGFTEDEFKEYQKNQAIVRYVYQDMVKDVEVNDEDIQKYY 180
Query: 184 RFY 186
Sbjct: 181 DEN 183
>gi|120556415|ref|YP_960766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
aquaeolei VT8]
gi|120326264|gb|ABM20579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinobacter
aquaeolei VT8]
Length = 447
Score = 75.7 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/447 (12%), Positives = 124/447 (27%), Gaps = 62/447 (13%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
++L + ++ ++ V V + + S +G +S + G +
Sbjct: 9 LTILLTLAMVVLSVTAQAERKLLDRVVAIVDDEVILQSELDARINTIVGRLSAQ-GTGLP 67
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
L++++LD L+ + Q + +G+ + +A + N +
Sbjct: 68 PREL----LEQRVLDQLIQESLQLQMADQMGMRISDNELNETLANI----ARSNGMTLAE 119
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM-RPSNLLLDQAKRFYFENRSVDYI 195
F +LA EG+ ++ + + + V VG R ++ ++ + N S D
Sbjct: 120 FEGQLAEEGVTYQQAREQIRNEMLTSRVQQRRVGNRVRVTDREVENYLQAQQANGSTDAE 179
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+ DP++ + R + V E + + ++
Sbjct: 180 YRLAYIFIEVDDPASEASVDEARETAQALRQQIANGRDFREVAVAESDASNALEGGDMGW 239
Query: 256 EYEKNKEKYFSP-------------------------------------EIRTVEQLVFP 278
E +P + V ++
Sbjct: 240 RSESQLPSLVAPVVPDLEVGEPSQVLENNSGFHLVMVMDKRGGEQQQFIQQHRVRHILVR 299
Query: 279 N---------QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSL 325
++ E +Q L+ G F LA E+ +LG S +
Sbjct: 300 PSEAVTDVQAEQRIREIYQQLQDGADFADLARERSDDPVSGSDGGNLGWVSPGQMVPA-- 357
Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
+ + A+ G++ FG+ I V + + E
Sbjct: 358 FEEAMNQAQVGEYFGPFRSQFGWHILQVEERRRQDVTEQNRESQARQAIYMRKFELELQN 417
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVS 412
+ +E E +
Sbjct: 418 WLREIRDEAFVEFKGEYADMNPESEEA 444
>gi|167627763|ref|YP_001678263.1| hypothetical protein Fphi_1536 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597764|gb|ABZ87762.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 477
Score = 75.7 bits (183), Expect = 2e-11, Method: Composition-based stats.
Identities = 72/494 (14%), Positives = 162/494 (32%), Gaps = 24/494 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59
ML+ + I ++ + F+I G++ + S S V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIIIISISFIFVISGMTFFFTNIGSSRSYVAKVGDNEIGLQQFQQY 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A + + +LD +++ + + + + I
Sbjct: 61 AQN-----------------ATTESQKRAVLDQMINQYLILADAQRHNIVVSKLALQSAI 103
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+P+F KD KFS D + G ++ + T + + ++
Sbjct: 104 FTNPIFFDKDGKFSADKLKQVVEYIG-GMNRLEQILSQNIQATMIPKTIADTVITTDYEK 162
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Q Y N+ ++Y+ L+ + PS L ++ +K++Y P K ISY +
Sbjct: 163 KQLASIYLVNKKIEYLKLSPVDFQSQVKPSQQDLESYYNAHKNDYINPAQKNISYFIISK 222
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-EAFQSLKKGKKFIQ 298
+ K I+NDELQ YE ++E + + T + Q E F + + ++
Sbjct: 223 EDFVSKNNINNDELQEYYETHRELFKDFDNNTKASIQKIIQNRRALEQFNNYSQNIDSVK 282
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
AE + + + + +L ++ F + + + + ++ V +
Sbjct: 283 FAELEKTLGKAKTASIVNNDESTISALTNAQFFVDNDKYSSIPL-ANNELLVYQVDKSQQ 341
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS---MDEISRREKIVSIDL 415
+ +VK ++ K+ + E ++L + L + + + +
Sbjct: 342 ASQQKLADVKDKVSKAFVAQKSQQLAIEKSQKLLDDLVSNKKVSISFKQATVDSDSKLFS 401
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ + + ++ LP + +E
Sbjct: 402 KEFNDYVMFNTNNQYNSYQSDNGDIYIYKVTKVEPLDSKNAKLPSQVLNATKEEELNFYL 461
Query: 476 DRKLEEVLTDVKKD 489
+EV V
Sbjct: 462 QVVKQEVPVKVNYK 475
>gi|307610559|emb|CBX00147.1| hypothetical protein LPW_18921 [Legionella pneumophila 130b]
Length = 253
Score = 75.3 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 15/260 (5%)
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS-RREKIVSIDLPLVDFAG 422
QEV+ I +Q+ A K + ++L + + K+ G
Sbjct: 1 MQEVENIIKDQLTSDMAQAKYAQVLEQLTDLSYQTPDSLDPVLDSLKLKIQHTEPFSRDG 60
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
GK+ + + + + + + S + +++K+ IP+R++ L+EV
Sbjct: 61 ----GKQPITKNKQVIHAAFSTDVLELGNNSEPIQIDNDSVIVLRVKKHIPSREQTLDEV 116
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+KK + + L+ + E K +++ N + +R ++
Sbjct: 117 RDQIKKILAKQYGDAKAKEIGSSLL--HPVEDKQQQELIANNQFEWHSVENASRDSDKAN 174
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG-----PVQEKDKFISYLTQM 597
D F+ + I + YVV K+ G +++D I +
Sbjct: 175 SLINDL---AFNLLRPESRDGVILDNGDYVVVKLKRINDGKLSSLDQEQRDSLIQQIEAS 231
Query: 598 MNKDLLDSVIAYLKSQYSVT 617
D + L +
Sbjct: 232 YGMMDYDLYVNNLLHHAKIE 251
>gi|254507748|ref|ZP_05119879.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16]
gi|219549273|gb|EED26267.1| peptidyl-prolyl cis-trans isomerse D [Vibrio parahaemolyticus 16]
Length = 181
Score = 75.3 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 58/179 (32%), Gaps = 16/179 (8%)
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
+ + + + V++++ L++V V +K + + A
Sbjct: 8 PEVKEDGLNSEVIEVAPEHVIVVRVEDYRDEMVLPLDDVREQVVATLSKIKGEQNAIALA 67
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
++LV E + + ++ G + ++R +F+ P
Sbjct: 68 DKLVAELKEGKQ---ELLNENGLAFNDVQAVDRSAPMADV--------IFAMPKPSEGKV 116
Query: 564 PIEN----GLSYVVFKVTNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ V K++N Q + + LTQM + L +I+ L+ +
Sbjct: 117 EYAQAKELNGNIAVVKLSNVSDEFDAQYNAQISNQLTQMNAQLDLTGLISVLRKTTDIE 175
>gi|303237614|ref|ZP_07324174.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
gi|302482066|gb|EFL45101.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
Length = 715
Score = 75.3 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 50/582 (8%), Positives = 157/582 (26%), Gaps = 37/582 (6%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMIS-QKIGFVVNSERARSVGLDKKILDNLVS 95
V + +K+ F ++ I ++ + + ++ +V+
Sbjct: 39 GEAKQQVGEILGKKINVQDFQKLVEEYQDAIKFTMQRDNLSEDEL--NQVKDQVWQQMVT 96
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
++ + +GL + + ++ LA+ ++
Sbjct: 97 NHVIEADAKKVGLSVTEQELQNVL--------------NEGTDPMLAQTPFKNQQTGRFD 142
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+L + V P +A Y+ + + +
Sbjct: 143 VTILKQFLDEYNKVKTANPQQAEQMKAAYNYWMFVEKNLRSQLLGQKFQALYAGCVLSNK 202
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
K E + + K+ I++++++L+A+YE+ K + +
Sbjct: 203 AEAKLAFKDENEEAQVQLASMAYSSIKDADIKVTDEDLKAKYEELKPMFRQTIETRD--I 260
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
+ + K + K ++ ++ + S S IP + L S + +
Sbjct: 261 KYVDYKISASQADRNALNKDMAAYQQQLATAVDPALVVSKSGSLIPYLGLPVSSKAYQQY 320
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
D I A N + + + + K + + ++
Sbjct: 321 PDIASKIDSLGVGTTAVTPNAQDNTLNIVRIMSKAQLPDSVQFRQIQVGAATKEQAATKA 380
Query: 396 ALGTSMDEISRREKIVSIDLPLVD---FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ ++ + + Q + + + +
Sbjct: 381 DSIQKALAGGANFEAIAKRYGQTGEKVWFTGQQYENSTSMNQDNRQYINAIMNGEVNGIQ 440
Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
+ + + + +Q+ + + ++ V K T +K ++ V + +
Sbjct: 441 NVVLTQGN---VILQVLDKKAMTTKTTAAIIKKVIDFSKD--TRSAAFNKFSEYVAKGAT 495
Query: 513 EGKNFRDIGKNLGASLLTTNQIN--RMDNENKFFGYDGISQVFSGPVEMVKC-FPIENGL 569
+ G + I+ + D + + +F + + +
Sbjct: 496 -LADLEKNAGKYGYRVQEQKNISTAQHDVVGVRATREALKWIFEAKEGDISQLYECGDND 554
Query: 570 SYVVFKVTNSKV------GPVQEKDKFISYLTQMMNKDLLDS 605
++V +T + K+ + + + +
Sbjct: 555 HFMVIALTKVHPQGYRSWDDAEVKEILKREVIKDKKAEQFMA 596
>gi|167590259|ref|ZP_02382647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ubonensis Bu]
Length = 452
Score = 75.3 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/183 (12%), Positives = 51/183 (27%), Gaps = 9/183 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V ++ R+ ++L+ +V
Sbjct: 39 TDEVVAVVNNDVITGRELDQRVGLISRRLKQQNAPVPPLDQMRA-----QVLNQMVLERI 93
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D V + R + N + D + +R+ +G+ +
Sbjct: 94 QVQKAKDDGIRIDDAAVQSTLQRL----AQANGMTLDQYRARIEAQGVPWSVFTGDARTE 149
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L + + V + + S + P++A
Sbjct: 150 LMLSKLREREVDSKITVSDAEVASYIASQRGPSASQQQDLRFQHIFVKAPTSAPQADIEA 209
Query: 219 KYK 221
K
Sbjct: 210 AQK 212
>gi|288959403|ref|YP_003449744.1| parvulin-like peptidyl-prolyl isomerase [Azospirillum sp. B510]
gi|288911711|dbj|BAI73200.1| parvulin-like peptidyl-prolyl isomerase [Azospirillum sp. B510]
Length = 374
Score = 75.3 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/157 (12%), Positives = 52/157 (33%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ ++ + + +++ K E +A ++ + K G + +
Sbjct: 191 IKARVTPEALQKAYQDYLKENPAQEEVKAAHILVEKEEEAKAIIAQLKKGGDFAKLAKEK 250
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ + + FS V P++ Y + KV + + P
Sbjct: 251 SKDAAAAAQGGDLGYFTKDAMVEPFANAAFSMKPGEVSKEPVKTQFGYHIIKVEDRRTQP 310
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
D+ L Q ++KD++ +++ L+ + V
Sbjct: 311 QPTLDEVKPQLEQTLSKDIVTALVEELRGKAKVETFQ 347
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V +++ S Q + Q ++ ++D LVSG +
Sbjct: 106 DPVVARVNGEELHKSDVTRMVSQLPPQVQQMPIEMIYPA----------VIDQLVSGKLV 155
Query: 100 DQFIEDIGLEADHGRVWGEIAR 121
GL V EI R
Sbjct: 156 SSAGYKAGLADSP-EVKDEIKR 176
>gi|163755251|ref|ZP_02162371.1| possible peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1]
gi|161324671|gb|EDP96000.1| possible peptidyl-prolyl cis-trans isomerase [Kordia algicida OT-1]
Length = 660
Score = 75.3 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 66/678 (9%), Positives = 183/678 (26%), Gaps = 97/678 (14%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
++L V F +G + ++ + S F +K+ L +I
Sbjct: 7 LFLILLVSFTTFG------QSKKDKVLFTIEGEPTYVSEFSRVYKKNLDII--------- 51
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+ + ++ D V + +++ L+ V G + S +
Sbjct: 52 -DEKDQKEI-EEYFDLFVEYKLKLKEAKNLKLDEKDSYVKE-------LAGYRKQLSRNY 102
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG---------MRPSNLLLDQAKRFYF 187
A E + ++ Y ++ + ++ + + + ++ + F
Sbjct: 103 MTDNNATEKLTKEAYDRLQKEVKASHILINVSLDAAPKDTLAAYNKIMDIRKSILEGADF 162
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQW--FEKYKDNYRAPEYKRISYILFDVHEKEKK 245
+V + + + L + F A + + V +
Sbjct: 163 GEMAVKHSDDPSAKGNQKVAANKGNLGYFSAFRMVYPFESAAFNTQKGEVSMPVRTQFGY 222
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
+ ++++ + + + + +++ + + ++ G F LA+ +
Sbjct: 223 HIVKVEDIRDNAGEITVAHILLLDKKEGENKEDPEQKIKDIYSQIQDGGDFGALAKRFSE 282
Query: 306 SLSDI----SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
S L F + + D FSL K + + FG+ I + + P +
Sbjct: 283 DRSSGVNKGILPKFGRGRLRSKIFEDVAFSLDKAKEISKPFKSEFGWHIVQLISKHPMKS 342
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF- 420
++ + +A+ K++ + + + K+ ++
Sbjct: 343 YEEEKPLLE-RKIKNDKRANVINTSILKKINQLYKIEEGKTARADFYKLADASFFSKNWK 401
Query: 421 ----------------AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + + + D +
Sbjct: 402 KPTDKTFLDKTLFQINDTRVTYDEFATYLLKNRSRNMVKNPDAKGFINRNYKEFMDNKLL 461
Query: 465 WVQ---IKESIPARDRKLEEVLTDV----------------------------KKDWKTV 493
++ E + K+D+K
Sbjct: 462 SFYESDLENVNEDFAAIYGEYRDGLLLFDLMENEIWNKAKTDTLGLEKFFNDNKEDYKWK 521
Query: 494 KTAEEV-----SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
+ E V + + V E + GK+ +I K + + E
Sbjct: 522 ERVEAVIASCSKEASAKKVQELLEAGKSLDEIKKAVNKDSKVNVIFSPGVFEKGHRN--- 578
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + F + K + + + + KV ++ + + L +
Sbjct: 579 LPEDFKFTKGVSKIYN-DGKTDFTIVKVDKIIPESYKKLSEIKGKVISDYQVYLEKEWVT 637
Query: 609 YLKSQYSVTVHDNLIQRY 626
LK Y V ++ + ++
Sbjct: 638 SLKKNYEVKINKRVYRKL 655
>gi|188590380|ref|YP_001919599.1| peptidylprolyl isomerase [Clostridium botulinum E3 str. Alaska E43]
gi|188500661|gb|ACD53797.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
E3 str. Alaska E43]
Length = 343
Score = 75.3 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 63/183 (34%), Gaps = 4/183 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
+ VA + + L + + + ++ + +VG++K+ K
Sbjct: 2 NKIKKIVASVVVATLAFSIVGCKMIEKTPEAIKNTVLATVGKEKITQGDLDRDLKSITES 61
Query: 67 ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ QK G S L + + L+ +V+ + ++ L + ++ +
Sbjct: 62 LKQKYGENYESNADIKDQLKELKTQYLNAIVNEKVILAKSAELNLRPSDEELNKDVDEAV 121
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
++ + + + + + L + G E E+ ++ V V + ++ + +
Sbjct: 122 SYYKTAYQ-TEEQYNTFLEQNGFTEDEFKEYQKNQAIVRYVYQDMVKDVEVNDEDIQKYY 180
Query: 184 RFY 186
Sbjct: 181 DEN 183
>gi|296134356|ref|YP_003641603.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola sp. JR]
gi|296032934|gb|ADG83702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermincola potens
JR]
Length = 183
Score = 74.9 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 61/194 (31%), Gaps = 14/194 (7%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+T++ + +++ V +++ S S V +V + F +K L
Sbjct: 4 KRKTYIFALLGLIILVSIVVF----LTKSNGSSDKVATVNGVSISKQEFNKQYKMILSYY 59
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+ + E GL +++L LV A + Q + + V I++ F G
Sbjct: 60 ETIARKLSDKE---KKGLQEEVLARLVDKAIILQEAQKRNIVVTDEEVNKYISQ--KFKG 114
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
L + K+Y + +R + + + + + K
Sbjct: 115 NKKLQDE-----YLKERSLTLKDYKEVVRYQKTREKLYDIVTKNYKYEDKPIQFTKYLNE 169
Query: 188 ENRSVDYIVLNNRH 201
+ + V
Sbjct: 170 LKKKAEIEVYVKFE 183
>gi|167629347|ref|YP_001679846.1| ppic-type ppiase domain protein, putative [Heliobacterium
modesticaldum Ice1]
gi|167592087|gb|ABZ83835.1| ppic-type ppiase domain protein, putative [Heliobacterium
modesticaldum Ice1]
Length = 338
Score = 74.9 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/291 (12%), Positives = 86/291 (29%), Gaps = 3/291 (1%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
SG + V SV + + S + +S+ G A L+++ L++++
Sbjct: 24 SSGGNVVASVNGETISRSDLDKRINRYKEELSRSGGADSKELMA---NLERQELEHMIDE 80
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
Q + +E G+V E+A+ D +F + RL + ++
Sbjct: 81 MLFTQEAKKRNIEVSDGQVAAELAKEKQQFPSDAEFQEALKRYRLTEDELSGIIRTRLIF 140
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
L + + D +F + +L A A +
Sbjct: 141 NGLYDAVTSDIQISDADVEKYYRDNPDKFKQNRQVKASHILLKTEEEAKAIIAELERGAD 200
Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
F + + + E ++ +D + + + +
Sbjct: 201 FAQLAVQKSTDSTAAQNKGDLGYFQAEDMVKEFSDAAFSMKKGETSRTPVKSNFGYHVIR 260
Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
+ KEA + K + + L ++ + + + + L +
Sbjct: 261 VEDIKEARQQRFDEVKDQIRVDLGADRKQERFESWFADVKAQAKIERKLPE 311
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 84/263 (31%), Gaps = 14/263 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + ++++ ++ E L +DE+ ++ ++ + D
Sbjct: 45 KRINRYKEELSRSGGADSKELMANLERQELEHMIDEMLFTQEAKKRNIEVSDGQVAAELA 104
Query: 428 KEVAAIPYKEQLLFRVF----GKDDPLSKDHTVALPDGSYMWV----QIKESIPARDRKL 479
KE P + + +D+ T + +G Y V QI ++ + +
Sbjct: 105 KEKQQFPSDAEFQEALKRYRLTEDELSGIIRTRLIFNGLYDAVTSDIQISDADVEKYYRD 164
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD- 538
+ K + +A ++ E + G +F + +
Sbjct: 165 NPDKFKQNRQVKASHILLKTEEEAKAIIAELER-GADFAQLAVQKSTDSTAAQNKGDLGY 223
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT--- 595
+ + + FS P+++ Y V +V + K Q D+ +
Sbjct: 224 FQAEDMVKEFSDAAFSMKKGETSRTPVKSNFGYHVIRVEDIKEARQQRFDEVKDQIRVDL 283
Query: 596 -QMMNKDLLDSVIAYLKSQYSVT 617
++ +S A +K+Q +
Sbjct: 284 GADRKQERFESWFADVKAQAKIE 306
Score = 40.6 bits (92), Expect = 0.71, Method: Composition-based stats.
Identities = 29/267 (10%), Positives = 84/267 (31%), Gaps = 5/267 (1%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
S +L + KE+ ++L+ +++ E + + +
Sbjct: 39 SRSDLDKRINRYKEELSRSGGADSKELMANLERQELEHMIDEMLFTQEAKKRNIEVSDGQ 98
Query: 309 DISLGSFSKEYIP-DVSLADS-IFSLAKKGDFTPVIHGSFGYVIAH--VSNIKPSFTVSF 364
+ + K+ P D ++ + + + +I + + V++
Sbjct: 99 VAAELAKEKQQFPSDAEFQEALKRYRLTEDELSGIIRTRLIFNGLYDAVTSDIQISDADV 158
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
++ +D ++ + + + K EE A+ ++ + ++ A
Sbjct: 159 EKYYRDNPDKFKQNRQVKASHILLKTEEEAKAIIAELERGADFAQLAVQKSTDSTAAQNK 218
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
A ++ F + V G Y +++++ AR ++ +EV
Sbjct: 219 GDLGYFQAEDMVKEFSDAAFSMKKGETSRTPVKSNFG-YHVIRVEDIKEARQQRFDEVKD 277
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYS 511
++ D + E S + +
Sbjct: 278 QIRVDLGADRKQERFESWFADVKAQAK 304
>gi|170760531|ref|YP_001788878.1| peptidylprolyl isomerase [Clostridium botulinum A3 str. Loch Maree]
gi|226712004|sp|B1KTE0|PRSA_CLOBM RecName: Full=Foldase protein prsA; Flags: Precursor
gi|169407520|gb|ACA55931.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
A3 str. Loch Maree]
Length = 335
Score = 74.9 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/296 (11%), Positives = 84/296 (28%), Gaps = 6/296 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--SWKQEL 64
++++ ++ + L V + F + + ST+ V +K+ +KQ +
Sbjct: 2 RSAKKLLSVLCLGVFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDENPRFKQVV 61
Query: 65 GMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + G + ++ ILD L++ L Q +++ + + E +
Sbjct: 62 SQMKMQYGEEFEKSEQGKEVIKEQKSQILDELITEKVLLQKGKELKVIPKDEELNKEADK 121
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
F L G ++ ++ + V+ G++ + +
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVINEATKGVKVEDKDAQK 181
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
++ + N + A + K+++ + D
Sbjct: 182 YYN-ENQSMFTEKPNTMNVSHILVKTEDEAKKVKKRLDAKEDFAKVAKEVSQDGSKDKGG 240
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
I S+ L + K I F + + K
Sbjct: 241 LLGDISYSDSNLDPTFLKAAIALKEGAISNPVHTQFGYHIIKINSKKEYPVKKFDA 296
>gi|223939789|ref|ZP_03631660.1| hypothetical protein Cflav_PD1192 [bacterium Ellin514]
gi|223891565|gb|EEF58055.1| hypothetical protein Cflav_PD1192 [bacterium Ellin514]
Length = 561
Score = 74.9 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 64/535 (11%), Positives = 168/535 (31%), Gaps = 49/535 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS---GSSTVVSVGRQKVPFSSFI 57
M IR+ + W+ + + + F+I+G +++ SS ++ + + FI
Sbjct: 1 MFGTIRRH-QAWLWIVIAALTIISFVIFGPTNSRIGSGLLGNSSQFGTINGKPITQEQFI 59
Query: 58 NSWKQELGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
N+ ++ G +S+ S D++ L + E+ G+
Sbjct: 60 NASREVQLGYFISNGRWPSSDPNASRMGYNEDRQTYQRL----FVIAKQEEFGIHPSSQA 115
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV-GGMR 173
V D L + ++ L ++ + G
Sbjct: 116 VAEMAREMLGKISLDQFIDQG-----LKPNNFDANDFQRFLQHELGIQQLLSVAGLSGKL 170
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
+ + S + + + A A + +++ ++ +Y PE +++
Sbjct: 171 VTPQEAKDLYIKEHQEISALLVNFSLSNYVAGVTVKPADVQEFYNRHASSYTLPERVQVN 230
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT-------VEQLVFPNQKEADEA 286
Y+ F++ + + + + E ++Y + R ++ +E
Sbjct: 231 YVEFNLSNYLSQAQSRMTNIDQDVESVYKQYGTNAYREAKTPEEAKSKIKEEMIRETALM 290
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE------------------YIPDVSLADS 328
G +L + K+ + + + +K +P+ ++
Sbjct: 291 DARRAAGAFAEELDKLPQKNAAAFADLAKAKGLKVSVTAPFSRGEGPQGMDVPESFTQNA 350
Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE-- 386
++ P++ + PS F+ +++ ++N R +A + +
Sbjct: 351 FGLTEQEPFAGPIVAPHSAAYVIAFKQRFPSEVPPFKSIEEKVSNDYRYYQAFLQAQASG 410
Query: 387 ---DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
+ LA S I+ K+ I LP + + + + L
Sbjct: 411 LAFATNTVPNGLAQNKSFSAIAAEAKVKPIHLPPFSLSTRSLPSELEEKGIDFTTLKKVA 470
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
F P+ K V +++S+P ++++ L + + + +
Sbjct: 471 FS--TPVGKVSQFIPSHQGGYVVYVEKSLPLDQSRMDKELPEFLAMVRQARQGDA 523
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 28/280 (10%), Positives = 80/280 (28%), Gaps = 19/280 (6%)
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ + + + + ++K+++ + + A + L++ +
Sbjct: 254 VESVYKQYGTNAYREAKTPEEAKSKIKEEMIRETALMDARRAAGAFAEELDKLPQKNAAA 313
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
+ K + + + + + + Q F + ++ + P
Sbjct: 314 FADLAKAK--GLKVSVTAPFSRGEGPQGMDVPESFTQNAFGLTEQEPFAG---PIVAPHS 368
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG----KNF 517
+ + K+ P+ + + V D++ + + + G K+F
Sbjct: 369 AAYVIAFKQRFPSEVPPFKSIEEKVSNDYRYYQAFLQAQASGLAFATNTVPNGLAQNKSF 428
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYD-------GISQVFSGPVEMVKCFPIENGLS 570
I + + + FS PV V F +
Sbjct: 429 SAIAAEAKVKPIHLPPFSLSTRSLPSELEEKGIDFTTLKKVAFSTPVGKVSQFIPSHQGG 488
Query: 571 YVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVI 607
YVV+ + + +E +F++ + Q D +
Sbjct: 489 YVVYVEKSLPLDQSRMDKELPEFLAMVRQARQGDAFNQWF 528
Score = 37.9 bits (85), Expect = 5.6, Method: Composition-based stats.
Identities = 23/240 (9%), Positives = 61/240 (25%), Gaps = 11/240 (4%)
Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
+A + ++++ + L + + ++ + + +F + +
Sbjct: 172 TPQEAKDLYIKEHQEISALLVNFSLSNYVA---GVTVKPADVQEFYNRHASSYTLPERVQ 228
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ F + T D ++ Q + + EE + +K++
Sbjct: 229 VNYVEFNLSNYLSQAQSRMTNIDQDVESVYKQYGTNAYREAKTPEEAKSKIKEEMIRETA 288
Query: 496 AEEVSSKANQLVLEY----SKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGIS 550
+ A E K F D+ K G + T +R +
Sbjct: 289 LMDARRAAGAFAEELDKLPQKNAAAFADLAKAKGLKVSVTAPFSRGEGPQGMDVPESFTQ 348
Query: 551 QVFSGPVEMVKCFP-IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
F + P + + V V ++ + +
Sbjct: 349 NAFGLTEQEPFAGPIVAPHSAAYVIAFKQRFPSEVPPFKSIEEKVSNDYR--YYQAFLQA 406
>gi|153941271|ref|YP_001392892.1| peptidylprolyl isomerase [Clostridium botulinum F str. Langeland]
gi|189037912|sp|A7GJD2|PRSA_CLOBL RecName: Full=Foldase protein prsA; Flags: Precursor
gi|152937167|gb|ABS42665.1| foldase protein PrsA [Clostridium botulinum F str. Langeland]
gi|295320869|gb|ADG01247.1| foldase protein PrsA [Clostridium botulinum F str. 230613]
Length = 336
Score = 74.9 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/289 (11%), Positives = 85/289 (29%), Gaps = 5/289 (1%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64
K+++ ++ + L + + F + + ST+ V +K+ S +Q L
Sbjct: 2 KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPNMQQVL 61
Query: 65 GMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
I + G + ++ IL+NL++ L Q +++ + + E +
Sbjct: 62 SQIKTQYGEEFEKTEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEADK 121
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
F L G ++ ++ + V+ ++ + +
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVINEVTKDVKVEDKDAQK 181
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ +N H+ + + + + +D + + +
Sbjct: 182 YYNENQSMFTEKPNTMNVSHILVKTEDEAKKVKKRLDAKEDFAKVAKEVSQDTGSKEKGG 241
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
I S+ + K S EI + + +
Sbjct: 242 LLGDISYSDSNYDPTFMKAAIALKSGEISNPVHTQWGYHIIKINSKKEY 290
>gi|330961060|gb|EGH61320.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
pv. maculicola str. ES4326]
Length = 440
Score = 74.9 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L K++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQKQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S D F + LA +G++ + + + +
Sbjct: 86 LQMGERAGIRVSDEELNQAIGTI----AQRNNMSVDQFRAALAHDGLSYDDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|163788664|ref|ZP_02183109.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteriales
bacterium ALC-1]
gi|159875901|gb|EDP69960.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteriales
bacterium ALC-1]
Length = 647
Score = 74.9 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 62/662 (9%), Positives = 180/662 (27%), Gaps = 93/662 (14%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+ +V+L + F FS S ++ V + + S F+ + + L ++ + +
Sbjct: 8 LIVVLLALNF--------SFSQDKDSELIKVDGESIMTSEFLRVYNKNLELVKDESQKDI 59
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ L + + + L D F + + +
Sbjct: 60 DG-----------YLKLFTEYQLKLKEAKRLKLHEDDKYQRE-------FLRYKKQLTKN 101
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
+ + ++ Y D + ++ + ++ + ++ S +
Sbjct: 102 YLSENKVTDVLVKEAY-DRSNQDINASHILVRLAETETDTLKAYNEVLALRERAISEGFD 160
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+ + K ++ Y + + + + +
Sbjct: 161 KVKTEVHNGKTIFLEDLGYFSAFKMVYDFETAAYNTPVDEISMPFRTQFGYHVVWVKEKR 220
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DIS 311
+ + + ++ ++ ++ L +G+ F LA++ S
Sbjct: 221 QSRGTVTAAHIMVALKQKDSLLDPEQRINDIYKKLNQGENFDALAKQFSDDKSSSNKGGK 280
Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
L F + F L GD + ++G+ I +KP F+++K +
Sbjct: 281 LSPFKSGQLSSEEFESQAFGLKADGDVSKPFKTAYGWHIVKRIKLKP--IQDFKDLKPSL 338
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
+++ S+ + + + + ++ I + + + +
Sbjct: 339 EVKVKRDSRSKLINAAMVSELKKRYNMSYDAD-AKAYFKSIITKDFFARSWRLPEDFQKD 397
Query: 432 AIPYKEQLLFRVFGK-------------DDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
+ + + P + S+ I +
Sbjct: 398 KTIFSINDRAFTYNEFGRHLMSAQRIYGGKPAEFSAVINKEYNSFFEKSIFQFREDNLEL 457
Query: 479 LEEVLTDVKKDWK-------------------------------------TVKTAEEVSS 501
+ ++ K+++ + ++S
Sbjct: 458 ENKDFANILKEYRDGLLLFDLMEKEIWNKASKDSVGIEAYYSKNKSKYQWKDRVEVVMAS 517
Query: 502 KANQL----VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
A++ VL+ K+GK+ I K L + D + F
Sbjct: 518 SADESHMKSVLKMMKKGKSEEAINKALNTDAKQNVIFTKSTY---AIDDDKLPTEFKAKK 574
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ K + ++ V V + ++ + ++ S I L ++ V
Sbjct: 575 GLSKIYKH--NEAFHVIDVKALLPAGNKTLEEAKGNVINDYQSEIEASWIKDLYKRFKVE 632
Query: 618 VH 619
++
Sbjct: 633 IN 634
>gi|225181417|ref|ZP_03734860.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiobacter
alkaliphilus AHT 1]
gi|225167815|gb|EEG76623.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiobacter
alkaliphilus AHT 1]
Length = 319
Score = 74.9 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/228 (12%), Positives = 72/228 (31%), Gaps = 5/228 (2%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
S ++TV +V +++ + ++ L + ++ ++ SE R + ++ +IL +V
Sbjct: 27 GGNSAANTVANVNGEEITRAELD-AYMNVLALFMPELQQMLESEELRGM-IEGEILSVMV 84
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
++Q +D+GL + E F S + F L INE++
Sbjct: 85 QNVVVEQAAKDLGLSVSDEELQAEYEE---FRAMMGGMSDEDFQEVLKEYDINEEDLKQS 141
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
+ + F + ++ + F + + +
Sbjct: 142 LRADVYVDKLEQHFASDITDEDIQAFIDENPSFGRQPATLELSHILFDEEEEALEARERI 201
Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
E + D + + + ++ Q + E
Sbjct: 202 LAGEDFGDLAVELSQDPTAQNEGHPGYRGYLGDNIAEDTQDFWSDFME 249
>gi|170756164|ref|YP_001783178.1| peptidylprolyl isomerase [Clostridium botulinum B1 str. Okra]
gi|226712003|sp|B1IGZ5|PRSA_CLOBK RecName: Full=Foldase protein prsA; Flags: Precursor
gi|169121376|gb|ACA45212.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
B1 str. Okra]
Length = 336
Score = 74.9 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 33/289 (11%), Positives = 84/289 (29%), Gaps = 5/289 (1%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64
K+++ ++ + L + + F + + ST+ V +K+ S +Q L
Sbjct: 2 KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQVL 61
Query: 65 GMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
I + G + ++ IL+NL++ L Q +++ + + E +
Sbjct: 62 SQIKTQYGEEFEKSEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEADK 121
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
F L G ++ ++ + V+ ++ + +
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVINEVTKDVKVEDKDAQK 181
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ +N H+ + + + + +D + + D
Sbjct: 182 YYNENQSMFTEKPNTMNVSHILVKTEDEAKKVKKRLDAKEDFAKVAKEVSQDTGSKDKGG 241
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
I S+ + K S I F + +
Sbjct: 242 LLGDISYSDSNFDPTFMKAAIALKSGAISNPVHTQFGYHIIKINSKKEY 290
>gi|152982039|ref|YP_001352108.1| peptidyl-prolyl cis-trans isomerase SurA [Janthinobacterium sp.
Marseille]
gi|151282116|gb|ABR90526.1| peptidyl-prolyl cis-trans isomerase SurA [Janthinobacterium sp.
Marseille]
Length = 469
Score = 74.9 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 61/177 (34%), Gaps = 9/177 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ +V V + + F+ +K + + G + E+ L +++L+ ++
Sbjct: 49 ADAIIVVVNNEVITRYDFLERYKMIEARLQSQGGNLPPREQ-----LQRQLLERMIVERA 103
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q ++ G++ D + + R + NK S F RL +G+ ++ +
Sbjct: 104 QLQQAKETGIKIDDTMLDRAMGRI----AEQNKLSMPEFRKRLEEDGLVYSKFRNEIRDE 159
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
++ + V + + A + + I P NA Q
Sbjct: 160 MAIQRLREREVDNKVQVSDVEIDAYMAAHNAPAATAPQELHIAQILIRVPENATQKQ 216
>gi|253581345|ref|ZP_04858571.1| peptidylprolyl isomerase [Fusobacterium varium ATCC 27725]
gi|251836709|gb|EES65243.1| peptidylprolyl isomerase [Fusobacterium varium ATCC 27725]
Length = 584
Score = 74.9 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 75/616 (12%), Positives = 179/616 (29%), Gaps = 52/616 (8%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDAL------FSVSGSSTVVSVGRQKVPFSSFI 57
IRK + K + ++ + ++ G L S S+ + K+
Sbjct: 9 AIRKFRKQ--MKPIIWLVTILMVLGGGYATLSSIIGSMSNGHSNYAFKLNGNKISKFEVE 66
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + S+ +G V+ + D +V+ + + + ++ G V
Sbjct: 67 KTKVTMIDGYSRYLGDKVDRGLIDIL-----AFDEVVNKNLTLEMADKLKVKVSSGDVNA 121
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ + G ++F L +G + + L+ + G+ P++
Sbjct: 122 QYDKIESSIGNKDQFKR-----MLQVQGYTKNTFKKELKDNLTVEKTLAKIQEGINPTDE 176
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+++ S L + + + + + +L
Sbjct: 177 EINKYYEDNLY-----------------IRFSGKPLAEVKNEVITDLKQTKGIEEYILLL 219
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KE K+E ++E +A E+N+ + I VE K
Sbjct: 220 NKARKEMKLENISEEYKAYVERNEMEEDGFAISNVEMAKRTLNNLFITNGDREKAR---- 275
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+L++E K+ ++ + + D +L K I S A +
Sbjct: 276 ELSKEYYKAQIKLAKIAIERGITVDETLPLDYKFEEYKKGLFENIKNSLNPTDAQLKEYF 335
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ + + + + + L T + + D P
Sbjct: 336 EKNKLVYDTFPSADSYIAILKVDPSAEDKAAAKTRAEELLKTLTPKNFAEVAKKNSDGPS 395
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
G + + ++ +F T+ Y+ + + A+
Sbjct: 396 SPNGGDLGWFSKKDMVEPFQKAVFAGEVGKIYPEPVETIFGQHLIYIEDRKDDEERAKAS 455
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT--TNQIN 535
+ V + T K + + + NF + K L + ++I+
Sbjct: 456 HILIVPKISEATLNTKKAE------IETVKEKLANGTVNFETLSKENKDVLQSTLFSKID 509
Query: 536 RMDNENK-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV---QEKDKFI 591
+ +F+ P+ V+ IE+ Y+ K+ K + K++
Sbjct: 510 DAGYIPGLGYNESLTKLIFAAPINSVQTALIEDKF-YIFKKINEVKYKAADFNELKNRVK 568
Query: 592 SYLTQMMNKDLLDSVI 607
++ L +I
Sbjct: 569 EDYLNSKTQEELKKLI 584
>gi|322807863|emb|CBZ05438.1| foldase protein PrsA precursor [Clostridium botulinum H04402 065]
Length = 336
Score = 74.5 bits (180), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/206 (11%), Positives = 66/206 (32%), Gaps = 5/206 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64
K+++ ++ + L + + F + + ST+ V +K+ S +Q L
Sbjct: 2 KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQVL 61
Query: 65 GMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
I + G + ++ +L+NL++ L Q +++ + + E +
Sbjct: 62 SQIKTQYGEEFEKSEQGKEVIKEQKKQVLENLITEKVLLQKGKELKVIPKDEELNKEADK 121
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
F L G ++ ++ + V+ ++ + +
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVINEVTKDVKVEDKDAQK 181
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIAD 207
+ +N H+ +
Sbjct: 182 YYNENQSMFTEKPNTMNVSHILVKTE 207
>gi|317485407|ref|ZP_07944286.1| SurA domain-containing protein [Bilophila wadsworthia 3_1_6]
gi|316923366|gb|EFV44573.1| SurA domain-containing protein [Bilophila wadsworthia 3_1_6]
Length = 308
Score = 74.5 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/211 (11%), Positives = 65/211 (30%), Gaps = 6/211 (2%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ FL++ L + + + V + + E + + + ++
Sbjct: 3 IVSTAFLLFFLITSPVRAAINGVAAVVNGEMITAFDLQAETAPE--AMRRGLNPKDPNQA 60
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
A L K L+ +++ L Q + + + V EI + NK + + F
Sbjct: 61 AAIEELTKATLERMINNIILTQEAQRLKISVGDSEVDNEIQQIMS----RNKMTPEEFQR 116
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
+L + EK++ + + R ++ VG + ++ +
Sbjct: 117 QLQIQRTTEKDFRERIRSSILRNRLLANMVGRKVIVTKEEIADYYNQHKQTFMNNQKVRF 176
Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
+ + K ++ +
Sbjct: 177 AVIVYPPTENAEAQAARIRSGKLSFEQAARQ 207
Score = 37.1 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 26/296 (8%), Positives = 80/296 (27%), Gaps = 14/296 (4%)
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK---VKEDYKRLEEF 394
T + + V A V+ + E + + K + ++E K E
Sbjct: 14 ITSPVRAAINGVAAVVNGEMITAFDLQAETAPEAMRRGLNPKDPNQAAAIEELTKATLER 73
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
+ + + ++R KI D VD + + + ++ L + +
Sbjct: 74 MINNIILTQEAQRLKISVGDSE-VDNEIQQIMSRNKMTPEEFQRQLQIQRTTEKDFRERI 132
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV------SSKANQLVL 508
++ + + + ++ + K+ + + + A
Sbjct: 133 RSSILRNRLLANMVGRKVIVTKEEIADYYNQHKQTFMNNQKVRFAVIVYPPTENAEAQAA 192
Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
+F + + + + ++ V N
Sbjct: 193 RIRSGKLSFEQAARQVSVGPRAQEGGDVGVVDWNSLDPTWQDRLSQLKPGDVSGLFEVNN 252
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMN----KDLLDSVIAYLKSQYSVTVHD 620
K+ + + G Q ++ + +++ ++ L+ + V +
Sbjct: 253 GLKGQLKLLSMESGDGQTLEEATPQIERILREPKLQERFREYSEQLRKRAVVEIRQ 308
>gi|285019522|ref|YP_003377233.1| ppic-type peptidyl-prolyl cis-trans isomerase [Xanthomonas
albilineans GPE PC73]
gi|283474740|emb|CBA17239.1| probable ppic-type peptidyl-prolyl cis-trans isomerase protein
[Xanthomonas albilineans]
Length = 455
Score = 74.5 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 22/186 (11%), Positives = 49/186 (26%), Gaps = 12/186 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGS---STVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ K L I G+S V V S + + +
Sbjct: 1 MTKTLSAFLLAVLAIAGVSAQAAVQQTQPLDRIAAVVDEDVVLQSELDRAVRNVKAQYAG 60
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ LV G+ + IA +
Sbjct: 61 RD-TQLPPDNV----LRRQVLERLVLVKLQVARANSTGIHVSDDELNRAIASI----AQQ 111
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
N D ++A +G++ ++ + ++ + F + A
Sbjct: 112 NNTDVDGLRKKIAADGMSYDDFRNSVRDEITVQRLRQSFAQSRINVSESEVDAALTQQAT 171
Query: 190 RSVDYI 195
Y
Sbjct: 172 TGTQYH 177
>gi|94986747|ref|YP_594680.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
PHE/MN1-00]
gi|94730996|emb|CAJ54359.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
PHE/MN1-00]
Length = 308
Score = 74.5 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 60/174 (34%), Gaps = 6/174 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + E+ Q++ +++A+ L+K IL+ ++S L
Sbjct: 24 NKTVAVVNGEIITLFDLQAETAPEI--FRQQLNPNNPADKAKVEQLEKAILEGMISNLIL 81
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + V E ++ + + F +L + + E + + +
Sbjct: 82 TQEAERLHVNVGKDEVESEYHN----FIAKSQLTPEEFQYQLELQHLTEDSFKERIRSSI 137
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
R+ ++G VG + ++ + L + D +
Sbjct: 138 LRSRLLGAMVGRKIVVTKKEIEDYYQKNHDKLKNNNQLQLAILVYPPDINAKDW 191
Score = 39.5 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 13/158 (8%), Positives = 48/158 (30%), Gaps = 5/158 (3%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ V KE + +++ + + + +++ A +F ++ K
Sbjct: 151 IVVTKKEIEDYYQKNHDKLKNNNQLQLAILVYPPDIN--AKDWAARIKSGSVSFEEVVKK 208
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG--LSYVVFKVTNSKV 581
+ + + + + + Q+ + V NG + + +
Sbjct: 209 VSVGPKAKEGGDLGSIDIEDLNPEWLEQLSTMKPGEVTSLIDINGLQGQLKLINIIKGEP 268
Query: 582 GPVQEKDKFISYLTQM-MNKDLLDSVIAYLKSQYSVTV 618
++ +I + + ++ L+ + V +
Sbjct: 269 QTLETLTPYIEEILREPKLEERFKEYTDQLRKRAVVDI 306
>gi|241668327|ref|ZP_04755905.1| hypothetical protein FphipA2_06151 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876860|ref|ZP_05249570.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842881|gb|EET21295.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 477
Score = 74.5 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 71/494 (14%), Positives = 162/494 (32%), Gaps = 24/494 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFS-VSGSSTVVSVGRQKVPFSSFINS 59
ML+ + I ++ + F+I G++ + S S V VG ++ F
Sbjct: 1 MLQSFNDRLKGPFTWIIIISISFIFVISGMTFFFTNIGSSRSYVAKVGDNEIGLQQFQQY 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ A + + +LD +++ + + + + I
Sbjct: 61 AQN-----------------ATTESQKRAVLDQMINQYLILADAQRHNIVVSKLALQSAI 103
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+P+F KD KFS D + G ++ + T + + ++
Sbjct: 104 FTNPMFFDKDGKFSADKLKQVVEYIG-GMNRLEQILSQNIQATMIPKTIADTVITTDYEK 162
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
Q Y N+ ++Y+ L+ + P+ L ++ +K++Y P K ISY +
Sbjct: 163 KQLASIYLVNKKIEYLKLSPVDFQSQVKPNQQDLESYYNAHKNDYINPAQKNISYFIISK 222
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-EAFQSLKKGKKFIQ 298
+ K I+NDELQ YE ++E + + T + Q E F + + ++
Sbjct: 223 EDFMSKNNINNDELQEYYETHRELFKDFDNNTKASIQKIIQNRRALEQFNNYSQNIDSVK 282
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
AE + + + + +L ++ F + + + + ++ V +
Sbjct: 283 FAELEKTLGKAKTASIVNNDESTISALTNAQFFVDNDKYSSIPL-ANNELLVYQVDKSQQ 341
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS---MDEISRREKIVSIDL 415
+ +VK ++ K+ + E ++L + L + + + +
Sbjct: 342 ASQQKLADVKDKVSKAFVAQKSQQLAIEKSQKLLDDLVSNKKVSISFKQATVDSNSKLFS 401
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ + + ++ LP + +E
Sbjct: 402 KEFNDYVMFNTNNQYNSYQANNGDIYIYKVTKVEPLDSKNAKLPSQVLNATKEEELNFYL 461
Query: 476 DRKLEEVLTDVKKD 489
+EV V
Sbjct: 462 QVVKQEVPVKVNYK 475
>gi|168181007|ref|ZP_02615671.1| foldase protein PrsA [Clostridium botulinum NCTC 2916]
gi|226950994|ref|YP_002806085.1| peptidylprolyl isomerase [Clostridium botulinum A2 str. Kyoto]
gi|254783410|sp|C1FNE4|PRSA_CLOBJ RecName: Full=Foldase protein prsA; Flags: Precursor
gi|182668154|gb|EDT80133.1| foldase protein PrsA [Clostridium botulinum NCTC 2916]
gi|226843437|gb|ACO86103.1| prsA family protein [Clostridium botulinum A2 str. Kyoto]
Length = 336
Score = 74.5 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/289 (11%), Positives = 84/289 (29%), Gaps = 5/289 (1%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQEL 64
K+++ ++ + L + + F + + ST+ V +K+ S +Q L
Sbjct: 2 KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDESPSMQQVL 61
Query: 65 GMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
I + G + ++ IL+NL++ L Q +++ + + E +
Sbjct: 62 SQIKTQYGEEFEKTEQGKEVIKEQKKQILENLITEKVLLQKGKELKVIPKDEELNKEADK 121
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
F L G ++ ++ + V+ ++ + +
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVINEVTKDVKVEDKDAQK 181
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ +N H+ + + + + +D + + D
Sbjct: 182 YYNENQSMFTEKPNTMNVSHILVKTEDEAKKVKKRLDAKEDFAKVAKEVSQDTGSKDKGG 241
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
I S+ + K S I F + +
Sbjct: 242 LLGDISYSDSNFDPTFMKAAIALKSGAISNPVHTQFGYHIIKINSKKEY 290
>gi|328950420|ref|YP_004367755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus
hydrothermalis DSM 14884]
gi|328450744|gb|AEB11645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus
hydrothermalis DSM 14884]
Length = 308
Score = 74.5 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 46/173 (26%), Gaps = 10/173 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ +PF V V + + S ++ L + + G + E
Sbjct: 10 LILLPFAAA---------QQDVVVAEVDGEPILLSELDLQFELFLRGVFGQQGVPITDEL 60
Query: 80 ARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
L +IL+ LV + Q GL A V + F +
Sbjct: 61 RARFAPLKAQILERLVRDRVVLQAARKAGLAASEEAVRERLMGIKEQFPDSAAFESALEA 120
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
S + E + + + T + L + + E
Sbjct: 121 SGIPSEDVLLQLMREAQTYNNYLDWLRPQLRISEPAMRLYYYLDRASFAEPEE 173
>gi|148284059|ref|YP_001248149.1| hypothetical protein OTBS_0138 [Orientia tsutsugamushi str.
Boryong]
gi|146739498|emb|CAM79204.1| hypothetical protein OTBS_0138 [Orientia tsutsugamushi str.
Boryong]
Length = 485
Score = 74.5 bits (180), Expect = 5e-11, Method: Composition-based stats.
Identities = 60/440 (13%), Positives = 143/440 (32%), Gaps = 13/440 (2%)
Query: 49 QKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
+ + S F+ + K + I Q + + + +L NL+S L+Q + L
Sbjct: 18 KNITKSEFMQALKLAMHQIPQNSDQNI----LTQNNIRELVLSNLISTHVLEQLAHEYNL 73
Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
V+ I S F + F ++F + L I+E +Y D TK ++ F
Sbjct: 74 TLSTAAVFKFIQNSKAF-NNNQNFDINIFRNILKNLHISEPQYFDQATKQQLSEILLHQF 132
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD---PSNAVLTQWFEKYKDNYR 225
+ ++L E R++ + ++ ++ + PS+ L +++ + +
Sbjct: 133 INNNYVPSILTKNIINLSAETRNIQLVSIDLQNEQLQSTLDSPSSEQLQEFYNNNQSKFE 192
Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
PE + ISYI+ D + + K+ + N L+ Y + +++ T + +
Sbjct: 193 KPEQRHISYIVLDNNYFKNKVIVDNKSLEEFYRTHSDQFSEKNSFTKNIAEVREKYVNHQ 252
Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
+ ++ G + S+I+ K + + + + T I
Sbjct: 253 VDKLFNDTITLLEDEVASGSNSSEIAKMLNVKLLTLNNVTKQKLANNKILSNVTDAIFAL 312
Query: 346 FGYVIAHVSNIKPSFTVSFQEVK-----KDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
+ ++ ++ + K + + + E K + L
Sbjct: 313 EEHETSYPLDVSSKMLIIVSIQKIIPSAVEKFDNVLNQVQEEWKKNTIRERNIELLNKFQ 372
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + L V I ++ + ++ + ++ +
Sbjct: 373 QTTNADNFIADAKKYKLTVKPNVIVTRLNNNTIELPKEFVEQLLTLKKRQVSNVYISTSN 432
Query: 461 GSYMWVQIKESIPARDRKLE 480
I RD +
Sbjct: 433 QHAYVALISAITTDRDLTTK 452
>gi|187777480|ref|ZP_02993953.1| hypothetical protein CLOSPO_01048 [Clostridium sporogenes ATCC
15579]
gi|187774408|gb|EDU38210.1| hypothetical protein CLOSPO_01048 [Clostridium sporogenes ATCC
15579]
Length = 348
Score = 74.1 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/206 (11%), Positives = 64/206 (31%), Gaps = 5/206 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--SWKQEL 64
K ++ ++ + L + + F + + ST+ V +K+ KQ +
Sbjct: 14 KNAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLEENPRLKQVV 73
Query: 65 GMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + G L ++ ILD L++ L Q +++ + + E+ +
Sbjct: 74 NQMKMQYGEEFEKSEQGKEVLKEQKSQILDELITEKVLLQKGKELKVIPKDEELNKEVDK 133
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
F L G ++ ++ + V+ ++ + +
Sbjct: 134 KFNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKSQIIIEKVINEATKDVKVEDKDAKK 193
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIAD 207
+ +N H+ +
Sbjct: 194 YYNENQSMFTEKPNTMNVSHILVKTE 219
>gi|120613390|ref|YP_973068.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
AAC00-1]
gi|120591854|gb|ABM35294.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
AAC00-1]
Length = 476
Score = 74.1 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 47/472 (9%), Positives = 113/472 (23%), Gaps = 79/472 (16%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + + + + ++ + G + +++L+ L++ Q
Sbjct: 72 IVAVVNTEPITNNEVQARVARVEHQLAAQGGERPP-----RRVIAREVLERLINEKIQVQ 126
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G++ D V + N S RLA +GI+ + + L
Sbjct: 127 MATESGIKVDDYAVSQAEQSV----ARQNSVSIPEMHRRLAADGISPERFRSELRNQLLI 182
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ V S+ + Q+ +
Sbjct: 183 QRLRERDVESR---------------------------------VRVSDLDVDQYMRDQQ 209
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ + K + + + E ++
Sbjct: 210 QSAMSDPSKIELNLGHILVSVPENASPEVVE-------------------------QRRQ 244
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
A +A ++ G+ F ++A + + LG + PD+ L G
Sbjct: 245 RAQQAADRVRAGEDFAKVARDLSDAPEAPTGGELGLRPADRYPDLFLR--TVQQVPVGGI 302
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ G+ + V + + + + ++ E
Sbjct: 303 AGPVRSPAGFHVLRVIERSRA---GIPATALQNHVRHILLRTGPQLTEAAAAERLAEYRR 359
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ + + D + K A P V
Sbjct: 360 RILSGQADFATLAREHSQ--DGSAKQGGDLGWAGPGRYVPEFEEAVDALKPDEISQPVVS 417
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
G ++ ++ E V+ + K E ++ A +
Sbjct: 418 RFGVHLIQLLERREAK--LTQREQRDMVRDAVREKKLEEAFTNWAQEARARA 467
>gi|150014979|ref|YP_001307233.1| peptidylprolyl isomerase [Clostridium beijerinckii NCIMB 8052]
gi|149901444|gb|ABR32277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
beijerinckii NCIMB 8052]
Length = 362
Score = 74.1 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/221 (14%), Positives = 75/221 (33%), Gaps = 4/221 (1%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + +VA + +V + V + + + + + +VG +K+ ++
Sbjct: 20 KKLKKFVAALAMVTIAVSAMGCKMIEKTPEAIQKTVLATVGNEKITKGDLDKEMEKYTAQ 79
Query: 67 ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ Q+ G S L + + LD+LV+ + Q ++ L+ + ++
Sbjct: 80 LKQQYGDNYESNAQVKDQLQQAKKQELDSLVTQKVVLQKATELNLKPSDDDINKQV-DDQ 138
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ K F S L + G+ E + D + V V + ++ +
Sbjct: 139 IAQIKSQYSEEGQFESVLEQNGLTEDQLKDVVKNNVIMQAVQQDIVKDIEVTDDDVQTYY 198
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+++ N H+ S+ + K N
Sbjct: 199 NENKDSKYTQGAGANASHILIAEKASDGSIDYDASLTKAND 239
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 36/283 (12%), Positives = 78/283 (27%), Gaps = 9/283 (3%)
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Q+ KK + + K + + + +D+ +
Sbjct: 82 QQYGDNYESNAQVKDQLQQAKKQELDSLVTQKVVLQKATELNLKPSDDDINKQVDDQIAQ 141
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
K + + + E + + + D + +Y
Sbjct: 142 IKSQYSEEGQFESVLEQNGLTEDQLKDVVKNNVIMQAVQQDIVKDIEVTDDDVQTYYNEN 201
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ +K + +KAN + + G +F + K
Sbjct: 202 KDSKYTQGAGANASHILIAEKASDGSIDYDASLTKANDIKAKLD-SGADFAKLAKENSTD 260
Query: 528 LLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK---- 580
T + + + + + + F E P+++ Y + K T K
Sbjct: 261 SGTKDNGGSLGFVAYNSTQLVAEFMDG-FKNLKEGEISAPVKSQFGYHIIKATGLKDSQV 319
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
Q KD+ S L Q +D L S I K+ V +++ +
Sbjct: 320 TPFEQVKDQIKSSLLQQKQQDALSSKITEWKTDLKVKTYEDKL 362
>gi|110803835|ref|YP_699739.1| peptidylprolyl isomerase [Clostridium perfringens SM101]
gi|123047143|sp|Q0SQ68|PRSA_CLOPS RecName: Full=Foldase protein prsA; Flags: Precursor
gi|110684336|gb|ABG87706.1| putative foldase protein PrsA [Clostridium perfringens SM101]
Length = 342
Score = 74.1 bits (179), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/249 (10%), Positives = 76/249 (30%), Gaps = 5/249 (2%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+ VA + VL + + + + +TV +V +K+ + K +
Sbjct: 4 VKKIVASALVGVLMFSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFTQMK 63
Query: 69 QKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ G + + + ++ IL++LV L + + +I +
Sbjct: 64 SQYGDKYMDDPQVAQQILQQRQGILNSLVEEKILVVEANKENIVPSEEELNKKIEQQIKL 123
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ + ++ + + + G NE + ++ ++ ++ +
Sbjct: 124 YKE--QYGEEGYKKAVESMGYNEDTFKEYLKNQFIADAAASNASKDIKVTDEEAQKYYDE 181
Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
+ V + RH+ + + K + K + L +
Sbjct: 182 NKKQFEVQAKGVLARHLLFENEEEAQKAYDEIQSGKTTFNDLFTKYENNKLEKKTPIAES 241
Query: 246 IEISNDELQ 254
+ ++ Q
Sbjct: 242 FVVPDENAQ 250
>gi|218781644|ref|YP_002432962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
alkenivorans AK-01]
gi|218763028|gb|ACL05494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
alkenivorans AK-01]
Length = 358
Score = 74.1 bits (179), Expect = 7e-11, Method: Composition-based stats.
Identities = 48/392 (12%), Positives = 118/392 (30%), Gaps = 63/392 (16%)
Query: 10 RTWVAKIFLVVLFVPFLIWG--LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ V ++ + + ++I G L++A V V + + + GM+
Sbjct: 2 KKLVMPALVIAMLLAWVIPGAALAEAGADDGSEKVVAVVNGASITQAELDQAL--MQGML 59
Query: 68 SQKIGFVVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ G ++ E+A+ ++LD L+ L Q IE + A G + ++
Sbjct: 60 NATKGMQLSPEQAQRFKSQYSGRVLDKLIMDELLSQEIEKRKITAAPGEMAKALSEQLEL 119
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ + + + + +
Sbjct: 120 QLMASGRTKKEYEESDLKAKGQTW--------------------------DQFIAGIAAR 153
Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
+ P ++A + ++++ ++
Sbjct: 154 PEVAHMYLLEKMAKTIAPEKVKVTDAEIRKFYDDNLESRFTKP----------------- 196
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
E + + + + +T E+ ++ + ++ K G F LA E
Sbjct: 197 ---------EEVRASHILFGTKDAKTAEEKEAIKKQAQEVLLKAKKPGADFAALAREYSS 247
Query: 306 SLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
S L F+KE + + + G+ + ++ FGY I V++ P+
Sbjct: 248 CPSKEKGGDLNFFTKERMVPEFSKAAFSM--EVGEISNLVETQFGYHIIKVTDKTPAEVR 305
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
F+ I + + +++ L+E
Sbjct: 306 PFESAALAIRKGLETQRVQQELMTLANGLKEK 337
>gi|254456501|ref|ZP_05069930.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083503|gb|EDZ60929.1| conserved hypothetical protein [Candidatus Pelagibacter sp.
HTCC7211]
Length = 475
Score = 74.1 bits (179), Expect = 7e-11, Method: Composition-based stats.
Identities = 45/408 (11%), Positives = 120/408 (29%), Gaps = 11/408 (2%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
S + + + + ++ V F+N + E + Q I ++ + +++L L+S
Sbjct: 38 STNNQNNIAKINKKNVTTQDFMN-YLNESRISQQAIRENID------NNIIEELLSGLIS 90
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
+ IE++ L V +I + F ++N F + L ++ Y
Sbjct: 91 TTLISLEIEELDLSITELTVLKKIKENKNFFDENNVFQRTKYEKFLLTNNMSAPMYELQL 150
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ + G LL + ++ S++Y + N + ++ +
Sbjct: 151 KNKELQKHLFDFIGAGTITPEFLLVKKFEEENKSLSLEYFPMENLYKNKEDLTNSEIENF 210
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
E R + + + ++ + + E + + E
Sbjct: 211 LKENKDLLKREFIDFKYVTLNPQILIGLEEFNQDFFDEIDKIENKISQGVTFEAIIENIN 270
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFS 331
+ + + K + I + + L + + +Y D L D +
Sbjct: 271 ANVLEIKEYAPSTTKKLNEDMIYSKRSSELDIIENGDNFLLYTITNKYDRDPDLTDQNIN 330
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+ F I K F+E+ + I ++ + +
Sbjct: 331 EEIRQLVYQKSKFDFNRSILEEIQKKEFNDNKFKEMASYNTQYLTINSINDHDVFEGNSV 390
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
+ +L S + + + + + + + +
Sbjct: 391 KILYSLPESSFTLVNDKDNKIYLVKITGSSKNSFSKTDENYLKFISNQ 438
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/439 (10%), Positives = 116/439 (26%), Gaps = 11/439 (2%)
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
NN + + + + + + +A + I+ ++ + + E
Sbjct: 38 STNNQNNIAKINKKNVTTQDFMNYLNESRISQQAIRENIDNNIIEELLSGLISTTLISLE 97
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD--I 310
++ E +I+ + N ++ E +
Sbjct: 98 IEELDLSITELTVLKKIKENKNFFDENNVFQRTKYEKFLLTNNMSAPMYELQLKNKELQK 157
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
L F + + +E K
Sbjct: 158 HLFDFIGAGTITPEFLLVKKFEEENKSLSLEYFPMENLYKNKEDLTNSEIENFLKENKDL 217
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + K + LEEF + + + + +
Sbjct: 218 LKREFIDFKYVTLNPQILIGLEEFNQDFFDEIDKIENKISQGVTFEAIIENINANVLEIK 277
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
P + L S+ + D ++ + D + + ++++
Sbjct: 278 EYAPSTTKKLNEDMIYSKRSSELDIIENGDNFLLYTITNKYDRDPDLTDQNINEEIRQLV 337
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+ S ++ + + K + LT N IN ++ F + +
Sbjct: 338 YQKSKFDFNRSILEEIQKKEFNDNKFKE--MASYNTQYLTINSIN----DHDVFEGNSVK 391
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD---LLDSVI 607
++S P ++ Y+V +SK + + ++ +++ + +L S
Sbjct: 392 ILYSLPESSFTLVNDKDNKIYLVKITGSSKNSFSKTDENYLKFISNQYTNNRMAILKSYD 451
Query: 608 AYLKSQYSVTVHDNLIQRY 626
L +Y V ++ I R
Sbjct: 452 QLLNDKYKVQLNQKTINRV 470
>gi|168183618|ref|ZP_02618282.1| foldase protein PrsA [Clostridium botulinum Bf]
gi|237796999|ref|YP_002864551.1| peptidylprolyl isomerase [Clostridium botulinum Ba4 str. 657]
gi|259534738|sp|C3KW94|PRSA_CLOB6 RecName: Full=Foldase protein prsA; Flags: Precursor
gi|182673144|gb|EDT85105.1| foldase protein PrsA [Clostridium botulinum Bf]
gi|229260856|gb|ACQ51889.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
Ba4 str. 657]
Length = 336
Score = 74.1 bits (179), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/296 (10%), Positives = 83/296 (28%), Gaps = 5/296 (1%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--SWKQEL 64
K+++ ++ + L + + F + + ST+ V +K+ +KQ +
Sbjct: 2 KSAKKLLSVLCLGIFILTFTACDMVEKTPEAKAKSTIAKVNGEKIQRKDLDENPRFKQVV 61
Query: 65 GMISQKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + G + ++ ILD L++ L Q +++ + + E +
Sbjct: 62 SQMKMQYGEEFEKSEQGKEVIKEQKSQILDELITEKILLQKGKELKVIPKDEELNKEADK 121
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
F L G ++ ++ + V+ ++ + +
Sbjct: 122 KVNEIKAVYNNDEKKFEETLKSTGFTKETLKEYLKDQIVIEKVINEATKDVKVEDKDAQK 181
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ +N H+ + + + + +D + + D
Sbjct: 182 YYNENQSMFTEKPNTMNVSHILVKTEDEAKKVKKRLDAKEDFAKVAKEVSQDTGSKDKGG 241
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
I ++ + K I F + + K
Sbjct: 242 LLGDINYNDANFDPTFMKAAMALKEGAISNPVHTQFGYHIIKINSKKEYPVKKFDA 297
>gi|186475166|ref|YP_001856636.1| SurA domain-containing protein [Burkholderia phymatum STM815]
gi|184191625|gb|ACC69590.1| SurA domain protein [Burkholderia phymatum STM815]
Length = 463
Score = 74.1 bits (179), Expect = 7e-11, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 48/145 (33%), Gaps = 9/145 (6%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
L+ + + + + V + ++Q+ + +++ L +++
Sbjct: 33 LNGSGSAQTVDTIAAVVNNGVITQRELDMRVGLITKRLNQQHAPIPPADQ-----LRQQV 87
Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
L+ +V Q + G+ D V + R + + ++ +R+ +G+
Sbjct: 88 LNQMVLERIQLQKAREDGITVDDATVQRTLERLA--QANNLQLD--MYRARIEAQGVPWT 143
Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRP 174
++ L + + V
Sbjct: 144 TFMGDAKTELILSRLREKEVDSKVT 168
>gi|264680840|ref|YP_003280750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
testosteroni CNB-2]
gi|262211356|gb|ACY35454.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
testosteroni CNB-2]
Length = 475
Score = 74.1 bits (179), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/234 (12%), Positives = 63/234 (26%), Gaps = 9/234 (3%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
S V V + + + ++ ++++ G + + L +++L+ L+
Sbjct: 68 SADYIVAVVNSEPITNNEVRARMERVAQNVTEQGGQLPS-----QSELARQVLERLIVER 122
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
Q +D G+ D+ V +A + N VSRL EGI+E ++
Sbjct: 123 VQLQEAKDTGINIDNMTVDQAVANV----ARQNNTDKAGLVSRLKAEGISEAQFRSEIRN 178
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ V V G + +
Sbjct: 179 QMLMQRVRERDVDGRVKVGEADIDRYLKDQKRPGDAAAGAAANLGHILITVPENASPAVV 238
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
+ + + F +E + A + Y +
Sbjct: 239 AEREAKAKQAAEAARKNPDFIAAVREFSDVPNGQGGGAMGMRPMSDYPELFSQQ 292
>gi|299531915|ref|ZP_07045315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
testosteroni S44]
gi|298720090|gb|EFI61047.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Comamonas
testosteroni S44]
Length = 475
Score = 73.7 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/234 (12%), Positives = 63/234 (26%), Gaps = 9/234 (3%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
S V V + + + ++ ++++ G + + L +++L+ L+
Sbjct: 68 SADYIVAVVNSEPITNNEVRARMERVAQNVTEQGGQLPS-----QSELARQVLERLIVER 122
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
Q +D G+ D+ V +A + N VSRL EGI+E ++
Sbjct: 123 VQLQEAKDTGINIDNMTVDQAVANV----ARQNNTDKAGLVSRLKAEGISEAQFRSEIRN 178
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ V V G + +
Sbjct: 179 QMLMQRVRERDVDGRVKVGEADIDRYLKDQKRPGDAAAGAAANLGHILITVPENASPAVV 238
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
+ + + F +E + A + Y +
Sbjct: 239 AEREAKAKQAAEAARKNPDFIAAVREFSDVPNGQGGGAMGMRPMSDYPELFSQQ 292
>gi|237736222|ref|ZP_04566703.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium mortiferum ATCC
9817]
gi|229421775|gb|EEO36822.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium mortiferum ATCC
9817]
Length = 575
Score = 73.7 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 57/612 (9%), Positives = 164/612 (26%), Gaps = 45/612 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+ RK + ++ I ++ + ++ ++ + + K+ +
Sbjct: 3 IRKFRKHIKPFIWFITILFIASSAMLAYMNMKSSYSRANVYAFKLDGDKISKIDVEKTKA 62
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
S+ +G ++ + + D++++ + E++ L+ + V +
Sbjct: 63 NLTQGYSRYLGDKLDKDLIEVI-----AFDDIINRNLTLKIAEELNLKVPNSEVNAQYEA 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+++ + + F LA +G +K + + + G+ P+ +
Sbjct: 118 I-----ENSVGNKEQFKRMLAVQGYTKKTFKNEIKNNMLIEKTFQKIQEGIVPTEEEIMN 172
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
S L + E + + + L + +
Sbjct: 173 NYNENKNTLY-----------------SEKSLDEAKEDIIKSLKEQKGMEEYLKLLEKIK 215
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
KIE + E Q EK + + I V+ ++ ++ + +
Sbjct: 216 VSAKIEDISQEYQGLVEKTEIEKDGFVITNVDLAKRTLNMLFMGNLDKVQAKEEAKKYYD 275
Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
Q K ++ + + V + + + I + + A+ +
Sbjct: 276 SQIKIANEAKKRGVTADETLPVDYQFAQYQKGLFENIKSGIKPTDADLKAYFEKNSLKYD 335
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
++ + + + + E ++
Sbjct: 336 TFPSAQADIAIVKIEPSSEDKVKAKAEAEEILKTLTSENFKEKAKELS-----------Q 384
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
G K ++ P + + D++ +
Sbjct: 385 GPSAGNGGELGWFSKGDMVEPFQKAVFEGEVGKVYPTPVETVFGYHLILIEDRNDKESKA 444
Query: 482 VLTDVKKDWKTVKTAEEVSSK-ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
+ + K + K +L + + + F +IGK + T
Sbjct: 445 KASHILIIPKVSEATINSKEKEIEELKNKLTSKEITFENIGKGRADVVQTNKFKINNAGY 504
Query: 541 NKFFG--YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLT 595
G + + P + V+ + + Y+ K + K + KD
Sbjct: 505 ISGLGYNENLAKYILDAPKDKVESITL-DEKVYIFNKTEDIKYKKAKFEEVKDSVREDYI 563
Query: 596 QMMNKDLLDSVI 607
++ + I
Sbjct: 564 NSKAQEDMKKYI 575
>gi|110799431|ref|YP_697171.1| peptidylprolyl isomerase [Clostridium perfringens ATCC 13124]
gi|123049564|sp|Q0TMG9|PRSA_CLOP1 RecName: Full=Foldase protein prsA; Flags: Precursor
gi|110674078|gb|ABG83065.1| putative foldase protein PrsA [Clostridium perfringens ATCC 13124]
Length = 342
Score = 73.7 bits (178), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/188 (12%), Positives = 60/188 (31%), Gaps = 6/188 (3%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+ VA + VL + + + + +TV +V +K+ + K +
Sbjct: 4 VKKIVASALVGVLMFSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFAQMK 63
Query: 69 QKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ G + + + ++ ++ LV+ L + +G++ + ++
Sbjct: 64 SQYGDKYMDDPQVAQQILQQRQSVVQGLVTDKVLGIEADKLGIKPSEEEIKKKVDEQ--- 120
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
K D F L EG E + D + V + ++ ++ +
Sbjct: 121 FENIKKGMGDNFDKALEAEGYTEDTFKDVIKNQVINQAVQDYIIKDVKVTDEDAQKYYDE 180
Query: 186 YFENRSVD 193
+
Sbjct: 181 NKQQFVAK 188
>gi|325922420|ref|ZP_08184189.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
19865]
gi|325547117|gb|EGD18202.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas gardneri ATCC
19865]
Length = 466
Score = 73.7 bits (178), Expect = 9e-11, Method: Composition-based stats.
Identities = 20/186 (10%), Positives = 49/186 (26%), Gaps = 9/186 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + +L + + ++ A S V V S + + +
Sbjct: 2 TKPFSVLLASLLVITSTVSPMASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAG 61
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ LV + G+ + IA +G
Sbjct: 62 RDNQ-LPPDDV----LQRQVLERLVLVKLQVGRADSTGIRVSDEELNRAIASIAQQNGTT 116
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
D +LA +G+ ++ + + F +
Sbjct: 117 V----DGLRQKLAADGMGYGDFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAT 172
Query: 190 RSVDYI 195
Y
Sbjct: 173 TGSQYH 178
>gi|116750899|ref|YP_847586.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
fumaroxidans MPOB]
gi|116699963|gb|ABK19151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
fumaroxidans MPOB]
Length = 326
Score = 73.7 bits (178), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 8/146 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
VL V F + S + S V V + + +S + ++ + + ++
Sbjct: 7 VLLVLFCVIAASGRCAADSLDRIVAVVNGEIILYSELQERLQ----LVQKSLPETRTNDP 62
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
AR +++++L + +Q + + + V I F D+ S +
Sbjct: 63 ARKAAIERELLQQMTREKLTEQEAKRLKITVTKKDVDEAI----AFVMADHNVSQAQMEA 118
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVV 165
RL G + +E+ TK L R ++
Sbjct: 119 RLKESGQSMEEFRKVLTKDLERDRLL 144
Score = 45.6 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 36/288 (12%), Positives = 81/288 (28%), Gaps = 11/288 (3%)
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
+++ + V P + K I ++ EK+ E + +
Sbjct: 38 ILYSELQERLQLVQKSLPETRTNDPARKAAIERELLQQMTREKLTEQEAKRLKITVTKKD 97
Query: 401 MDE-ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+DE I+ ++ ++ K+ + L R + L ++
Sbjct: 98 VDEAIAFVMADHNVSQAQMEARLKESGQSMEEFRKVLTKDLERDRLLERVLKSKILISEK 157
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
Q + R EE + + + + K + + E K G++F
Sbjct: 158 QIDAFLSQSPPEVRVEPRGKEEYRLGIIFLPASDGAEGKQAEKRAREIREKLKAGEDFAA 217
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+ + + + V + ++ G Y +F VT+
Sbjct: 218 MARQYSKGPAAQDGGDVGFVSLDELAPFIAKNVKDLKINQ-PSDVVKGGDGYYIFLVTDV 276
Query: 580 ---------KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+++ L Q D I L+S+ V +
Sbjct: 277 RRAEMQAAQNSPATNMRERARRQLYQQEMARRFDEWIKDLESRSFVKI 324
>gi|154491017|ref|ZP_02030958.1| hypothetical protein PARMER_00934 [Parabacteroides merdae ATCC
43184]
gi|154088765|gb|EDN87809.1| hypothetical protein PARMER_00934 [Parabacteroides merdae ATCC
43184]
Length = 712
Score = 73.7 bits (178), Expect = 9e-11, Method: Composition-based stats.
Identities = 65/568 (11%), Positives = 137/568 (24%), Gaps = 53/568 (9%)
Query: 25 FLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
F + D L S S TV V + + F + + M + G E
Sbjct: 23 FAFI-IGDFLNSGSTYFRQSQETVAEVDGEVIKIQEFQDRVDEMTEMYKMQTGSTSLPEE 81
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---------EIARSPLFHG-KD 129
+ + + D +V L++ ++G+ ++ I + +F +
Sbjct: 82 -YQTQIRQSVFDGMVQDIVLNEATSELGMGVGPEELFDMVQGENISPMIQQMQMFVNPQT 140
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
F ++ L + + L+Q
Sbjct: 141 GAFDKTALLNFLKTIDDDNIANYPADQQAQLLQGRQFWMFWEKNIKRQRLEQKYTTLLSK 200
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
+ A S+ V + K L++
Sbjct: 201 AVSANKLDAKDAFDGSAVSSDIVYAMQSYASIPDSTIQVSKSDIEKLYNQ---------- 250
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
EL + E KY + +IR ++ E + L +K L E +
Sbjct: 251 RKELFKQKEGKVIKYIAVDIRPSKEDYDKASAEIESLKSELATSEKVADLVTENSEIP-- 308
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
+ +F E D + + + + PV + V +V +
Sbjct: 309 -YMDAFFTENALDPEMKQFVKTANVGDVYGPVFENDKYRLFKLVDKTVAPDSVKVSHIML 367
Query: 370 DIANQMRITKASEKVKEDYKR---LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
KA + + LA S D+ + + + G +
Sbjct: 368 ANTGDEAAIKAKADSLLNVLKKGGDFVALAKEYSADQAAEKGGELGWFTEATALRGVNDD 427
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
K+ + K Y I ++ + + ++
Sbjct: 428 FKKAVFSTPVNDYSIVKSLYGTHIIKVTDKTTNVDKYKVADIDMTVSPSTKTYGNIYNEL 487
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF-- 544
+ + ++ D K G +LL+ + D
Sbjct: 488 NQFISKNQNIDK------------------LDDAAKEAGYNLLSNVTVTANDQLLGSIKN 529
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYV 572
I F + + +
Sbjct: 530 SRPVIRWAFQNNKGDISEIFECDDKFVI 557
Score = 62.6 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 61/572 (10%), Positives = 159/572 (27%), Gaps = 28/572 (4%)
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++ ++ + ++ L+ L + + L+A
Sbjct: 157 DDNIANYPADQQAQLLQGRQFWMFWEKNIKRQRLEQK-YTTLLSKAVSANKLDAKDAFDG 215
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ ++ + D + + K + + V
Sbjct: 216 SAVSSDIVYAMQSYASIPDSTIQVSKSDIEKLYNQRKELFKQKEGKVIKYIAVDIRPSKE 275
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + V ++ + +F + + ++ + + +
Sbjct: 276 DYDKASAEIESLKSELATSEKVADLVTENSEI--PYMDAFFTENALDPEMKQFVKTANVG 333
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ + +L + S + + +AD LKKG F
Sbjct: 334 DVYGPVFENDKYRLFKLVDKTVAPDSVKVSHIMLANTGDEAAIKAKADSLLNVLKKGGDF 393
Query: 297 IQLAEEQGKSL---SDISLGSFSKEY---IPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ LA+E LG F++ + ++FS ++ +G I
Sbjct: 394 VALAKEYSADQAAEKGGELGWFTEATALRGVNDDFKKAVFSTPVNDYS--IVKSLYGTHI 451
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
V++ + V +V TK + + + +D+ ++
Sbjct: 452 IKVTD--KTTNVDKYKVADIDMTVSPSTKTYGNIYNELNQFISKNQNIDKLDDAAKEAGY 509
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ V + + +I ++ F + + D ++ I+
Sbjct: 510 NLLSNVTVTA-----NDQLLGSIKNSRPVIRWAFQNN--KGDISEIFECDDKFVIAAIQG 562
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
++P R LE V +K + K E+++ + K + + + +S +
Sbjct: 563 TLPEGYRSLESVTPMLKSELIAQKKGEKIAQDLSA------KNLSSVDAYAQAMNSSADS 616
Query: 531 TNQINRMDNENKFFGYDG-ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKD 588
++ G + ++ + S + P+ VFKV ++
Sbjct: 617 VKFVSFATRRIAGIGVEPKLNAMVSLAQKDQLSAPVVGNNGVYVFKVYEQNKDAKNYDEA 676
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
I L I L ++ V +
Sbjct: 677 AEIKALDASNAYRFGFQAIQSLVNKADVEDNR 708
>gi|220932053|ref|YP_002508961.1| peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
gi|219993363|gb|ACL69966.1| peptidyl-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
Length = 495
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/181 (11%), Positives = 52/181 (28%), Gaps = 21/181 (11%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS------GSSTVVSVGRQKVPFS 54
M + +R S+ + + L + G S + + V +P
Sbjct: 1 MFKKLRNYSKYII-YFVVAALVLTGAFLGFGAYRNSSPAASSVIDPNYIARVNDTSIPRE 59
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL--EADH 112
++ + V +L+ L+ L Q E +G+
Sbjct: 60 TYYQYLQNNAQFAQLSREQQVP--------YRLNLLNQLIERELLLQEAEKLGIESNPTD 111
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
V +I + + + + L GI +++ + + ++++ +
Sbjct: 112 KEVKEQINKM----LEAYNITEEKLKELLDSRGIKYEDFKEDIRHNIKTSNIIRKTIEHT 167
Query: 173 R 173
Sbjct: 168 Y 168
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/268 (11%), Positives = 84/268 (31%), Gaps = 15/268 (5%)
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
Q A ++ L + + + + + I+ D K+ K +
Sbjct: 63 QYLQNNAQFAQLSREQQVPYRLNLLNQLIERELLLQEAEKLGIESNPTDKEVKEQINKML 122
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
A E+ L + +D + I+++I + +E ++++ +
Sbjct: 123 EAYNITEEKLKELLDSRGIKYEDFKEDIRHNIKTSNIIRKTIEHTYKGVEVSEDEIREAY 182
Query: 491 KTV-----------KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
+ V + +E +K + + E +EGK F ++ L + +
Sbjct: 183 EKVRPALIAVNIEGEKKKEARAKIEKALKEL-EEGKAFGEVAAKYSDLKLKDGDLGFIGR 241
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ---EKDKFISYLTQ 596
N F + + + F Y+V + + +++ L +
Sbjct: 242 NNGFLPQEVLDKAFELEKGKTSDIIEGEKGYYIVKVIDKKLARGEEFEKSREELKDQLLK 301
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + K Q + ++D ++
Sbjct: 302 QKQNRTYQNWLRDTKKQADIEIYDPVLN 329
>gi|18311465|ref|NP_563399.1| peptidylprolyl isomerase [Clostridium perfringens str. 13]
gi|46396974|sp|Q8XHK0|PRSA_CLOPE RecName: Full=Foldase protein prsA; Flags: Precursor
gi|18146149|dbj|BAB82189.1| probable protein export protein [Clostridium perfringens str. 13]
Length = 342
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/188 (12%), Positives = 60/188 (31%), Gaps = 6/188 (3%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+ VA + VL + + + + +TV +V +K+ + K +
Sbjct: 4 VKKIVASALVGVLMFSAVGCNMVEKTQAAIDKTTVATVNGEKITLGEVDSHLKGVFAQMK 63
Query: 69 QKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ G + + + ++ ++ LV+ L + +G++ + ++
Sbjct: 64 SQYGDKYMDDPQVAQQILQQRQSVVQGLVTDKVLGIEADKLGIKPSEEEIKKKVDEQ--- 120
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
K D F L EG E + D + V + ++ ++ +
Sbjct: 121 FENIKKGMGDNFDKALEAEGYTEDTFKDVIKNQVINQAVQDYIIKDVKVTDEDAQKYYDE 180
Query: 186 YFENRSVD 193
+
Sbjct: 181 NKQQFVAK 188
>gi|167617958|ref|ZP_02386589.1| survival protein SurA, putative [Burkholderia thailandensis Bt4]
Length = 448
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 38 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERI 92
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + N D + +R+ +G+ ++
Sbjct: 93 QVQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDLFVRDARTE 148
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V + + + + P+NA
Sbjct: 149 LMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGAQQDLRLEHIFVKAPTNAP 202
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 35/370 (9%), Positives = 99/370 (26%), Gaps = 9/370 (2%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ K+ + +LA+ G L +
Sbjct: 74 PPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQANGMPLDQYKARIEA 133
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ D+ + D+ L + A V++ S ++D+ +
Sbjct: 134 QGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGAQQDLRLEHI 193
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
KA + + A G ++ + + G P
Sbjct: 194 FVKAPTNAPQADIDAAQKKAEGLLQQALASGTNFERLATSQSEADDAKKGGDLGFKAPSS 253
Query: 437 --EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ V + +PDG + + +++ +
Sbjct: 254 LPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVDRRASQNPAASPKIVQTHVRHILLRV 313
Query: 495 TAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ S+A Q +++ + G +F + + +Q + + +
Sbjct: 314 GEGKSESQARQQLIDIRRQIEAGGDFEKFARTYSQD-GSASQGGDLGWISPGETVPEFER 372
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIA 608
+ + P+ Y + +V + + + + Q + +
Sbjct: 373 AMNALQDGQVSNPVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLR 432
Query: 609 YLKSQYSVTV 618
L+ V +
Sbjct: 433 ELRDSSYVQI 442
>gi|332798185|ref|YP_004459684.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tepidanaerobacter
sp. Re1]
gi|332695920|gb|AEE90377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Tepidanaerobacter
sp. Re1]
Length = 320
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/203 (9%), Positives = 54/203 (26%), Gaps = 9/203 (4%)
Query: 14 AKIFLVVLFVPFLIWG------LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
KI +++L + G + + G + V + + S + Q +
Sbjct: 4 IKISILLLICVIAMAGCQNVEKVETQGKIIDGKEVIAKVNDELILKSDYDRQVLQVKSAL 63
Query: 68 SQKIGFVVNSERARS--VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
G +++ + + +K+L+++++ + Q E + I+ +
Sbjct: 64 EAN-GQDFSTDEGKKVLKEIREKVLESMINDQLILQQAEKDNITLGEKEFKQAISDLEQY 122
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
HG + + L R + + + D F
Sbjct: 123 HGGKDALDKYLEQQELDRSSFEKLVKEQLVINQFKEKLTSDIKITDEEVKKFYEDNKTMF 182
Query: 186 YFENRSVDYIVLNNRHVPAIADP 208
+ +
Sbjct: 183 ELPAPEIRASHILVDTENEAKKI 205
>gi|78045210|ref|YP_359073.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
[Carboxydothermus hydrogenoformans Z-2901]
gi|77997325|gb|ABB16224.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
[Carboxydothermus hydrogenoformans Z-2901]
Length = 337
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/385 (12%), Positives = 119/385 (30%), Gaps = 68/385 (17%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
L+ + ++ G D V V + + F + Q + +
Sbjct: 7 VVAVLLTFVLALIVAGCGDY---------VAKVNGKTISKKDFDRRFAQVQADMKLRGVD 57
Query: 74 VVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ ++E + + L ++ LD +++ + ++ ++ +E + +I
Sbjct: 58 LTSTEGQKMLQSLKQQTLDQMINEILISEYGKEKKIEPTKDEITNKINEIRAQFP----- 112
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
S F L I +K+ + L + G
Sbjct: 113 SPQDFEKALKDRNITDKDLQEMVRVQLINDKIYNEVTKG--------------------- 151
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
S + +++EK+K+ + + +
Sbjct: 152 -------------ITVSEQEVKEYYEKHKNE----------------PDFQTPEQRQVRH 182
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SD 309
+ + V++ +K A+E + +K GK F LA+E+ +
Sbjct: 183 ILIAVNDGNAQNNPHFNINVKRTDAEAKKLAEELIKQIKAGKDFATLAKEKSDDPGVKEN 242
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
+FS+ + + + +FGY I + I P+ +++EVK+
Sbjct: 243 GGQYTFSRGEMVKEFEDAAFALKKPGDITETPVKTAFGYHIIKLEKIIPARQKTYEEVKE 302
Query: 370 DIANQMRITKASEKVKEDYKRLEEF 394
+ N + K E + + L++
Sbjct: 303 QLKNYLLEKKKREAYNKFLEDLKKK 327
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/317 (8%), Positives = 70/317 (22%), Gaps = 15/317 (4%)
Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
G + D A + +G G +
Sbjct: 25 DYVAKVNGKTISKKDFDRRFAQVQADMKLRGVDLTSTEGQKMLQSLKQQTLDQMINEILI 84
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
+ + + ++ V +
Sbjct: 85 SEYGKEKKIEPTKDEITNKINEIRAQFPSPQDFEKALKDRNITDKDLQEMVRVQLINDKI 144
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
+ I EQ + + K T ++ + + + +
Sbjct: 145 YNEVTKGITVSEQEVKEYYEKHKNEPDFQTPEQRQVRHILIAVNDGNAQNNPHFN----- 199
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
VK + + K + +++ K GK+F + K +
Sbjct: 200 -----INVKRTDAEAKKLAEELIKQIKAGKDFATLAKEKSDDPGVKENGGQYTFSRGEMV 254
Query: 546 YDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ----MMNK 600
+ F+ + P++ Y + K+ + ++ L +
Sbjct: 255 KEFEDAAFALKKPGDITETPVKTAFGYHIIKLEKIIPARQKTYEEVKEQLKNYLLEKKKR 314
Query: 601 DLLDSVIAYLKSQYSVT 617
+ + + LK + +
Sbjct: 315 EAYNKFLEDLKKKAKIE 331
>gi|144897576|emb|CAM74440.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetospirillum
gryphiswaldense MSR-1]
Length = 421
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/199 (11%), Positives = 57/199 (28%), Gaps = 11/199 (5%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
++I L + L + V + + + + + L +
Sbjct: 2 FSRIVLTCATAALALT-LWSGAQAQMLDRVVAVINDEAISYRDVEARVRLAL------VS 54
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ + + ++L ++ Q + + + + V G IA + ++
Sbjct: 55 SNIPDSQEARQRVVPQVLRKMIDERLQLQEAQRLSIVLSNADVDGAIATIE----QQSRM 110
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+S LAR+G++ + L+ +V +G + +R
Sbjct: 111 PRGALLSNLARQGVDPARVREQIRADLTWMRLVTRVIGPQIRIGEEEVNDRLQSLADRQG 170
Query: 193 DYIVLNNRHVPAIADPSNA 211
V + P
Sbjct: 171 LREVRAAEIFLPVESPDQE 189
>gi|330812129|ref|YP_004356591.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380237|gb|AEA71587.1| putative peptidylprolyl isomerase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 438
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 52/150 (34%), Gaps = 9/150 (6%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + L G + S V V V S + I+++ G
Sbjct: 12 LMLGALFLGTAANAAVQSIDKVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGQPPP--- 68
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
LD+++L+ L+ Q E G+ + + + N S D F +
Sbjct: 69 --GVLDQQVLERLIVENLQLQIGERSGIRITDEELNQAVGTI----AQRNNMSIDQFRAA 122
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LAR+G++ ++ D + + + V V
Sbjct: 123 LARDGLSYEDARDQIRREMVISRVRQRRVA 152
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/236 (8%), Positives = 70/236 (29%), Gaps = 5/236 (2%)
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
++ + + + G P + F +
Sbjct: 202 RQAMDVYQQLKQGADFGQMAIAKSGSDNALEGGDMGWRKPAQLPPPFDRELSAMAVGDIT 261
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
A G ++ +++ E + +EV + +E + + + + + + G
Sbjct: 262 QPARTPGGFIILKVLEKRGGGTQVRDEVHVRHILIKPSEIRSEAETKRLAEKLYDRIEAG 321
Query: 515 KNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
++F ++ K+ + ++ + + + P + P ++ + V
Sbjct: 322 EDFAELAKSFSEDPGSALNGGDLNWVDPNALVPEFRQVMADTPQGQL-SKPFKSPYGWHV 380
Query: 574 FKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+V + + + ++ L + L + + ++ + V + +
Sbjct: 381 LEVLGRRATDSTTQAREQQAMTVLRNRKYDEELQTWLRQIRDEAYVEIKLPGADQA 436
>gi|167579883|ref|ZP_02372757.1| survival protein SurA, putative [Burkholderia thailandensis TXDOH]
Length = 448
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 38 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERI 92
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + N D + +R+ +G+ ++
Sbjct: 93 QVQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDLFVRDARTE 148
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V + + + + P+NA
Sbjct: 149 LMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGAQQDLRLEHIFVKAPTNAP 202
Score = 47.2 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 35/370 (9%), Positives = 97/370 (26%), Gaps = 9/370 (2%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ K+ + +LA+ G L +
Sbjct: 74 PPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQANGMPLDQYKARIEA 133
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ D+ + D+ L + A V++ S ++D+ +
Sbjct: 134 QGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGAQQDLRLEHI 193
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
KA + + A G ++ + + G P
Sbjct: 194 FVKAPTNAPQTDIDAAQKKAEGLLQQALASGTNFERLAKSQSEADDAKKGGDLGFKAPSS 253
Query: 437 --EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ V + +PDG + + +++ +
Sbjct: 254 LPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVDRRASQNPAASPKIVQTHVRHILLRV 313
Query: 495 TAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ S+A Q +++ + G +F + + + +
Sbjct: 314 GEGKSESQARQQLIDIRRQIEAGGDFEKFARTYSQDGSASQGGDLGWISPGETVPEFERA 373
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIA 608
+ + V P+ Y + +V + + + + Q + +
Sbjct: 374 MNALQEGQVSN-PVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLR 432
Query: 609 YLKSQYSVTV 618
L+ V +
Sbjct: 433 ELRDSSYVQI 442
>gi|167835488|ref|ZP_02462371.1| survival protein SurA, putative [Burkholderia thailandensis MSMB43]
Length = 448
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 38 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERI 92
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + N D + +R+ +G+ ++
Sbjct: 93 QVQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDLFVRDARTE 148
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V + + + + P+NA
Sbjct: 149 LMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPTNAP 202
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 36/376 (9%), Positives = 103/376 (27%), Gaps = 9/376 (2%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ K+ + +LA+ G L +
Sbjct: 74 PPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQANGMPLDQYKARIEA 133
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ D+ + D+ L + A V++ S ++D+ +
Sbjct: 134 QGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHI 193
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
KA + + A G ++ + + G P
Sbjct: 194 FVKAPTNAPQADIDAAQKKADGLLQQALASGANFERLAKSQSEADDAKKGGDLGFKSPSS 253
Query: 437 --EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ V + +PDG + ++ +++ +
Sbjct: 254 LPSDVVDAVSKLRPGEVNPALIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRV 313
Query: 495 TAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ S+A Q +++ + G +F + + +Q + + +
Sbjct: 314 GEGKSESQARQQLIDIRRQIEAGGDFEKFARTYSQD-GSASQGGDLGWISPGETVPEFER 372
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIA 608
+ + P+ Y + +V + + + + Q + +
Sbjct: 373 AMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLR 432
Query: 609 YLKSQYSVTVHDNLIQ 624
L+ V + ++Q
Sbjct: 433 ELRDSSYVQIKLPVVQ 448
>gi|90020386|ref|YP_526213.1| L-ribulokinase [Saccharophagus degradans 2-40]
gi|121956457|sp|Q21MS8|SURA_SACD2 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|89949986|gb|ABD80001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus
degradans 2-40]
Length = 430
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 50/438 (11%), Positives = 112/438 (25%), Gaps = 61/438 (13%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ + F + V V V + + + + + SQ
Sbjct: 3 IIKTTIATFTAIAFTGAASFTSAEVVPLDRVVAVVDNRAITQTELDSRVQDVQVR-SQAA 61
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
G + L+K+I+D L+S + + G++ V I ++ +
Sbjct: 62 GMRLPEADI----LNKQIIDQLISETLQLEMADRYGVQVSDQEVNASIGNI----IQNAQ 113
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG----------MRPSNLLLDQ 181
+ FV +LA EG++ E+ + L+ + V +
Sbjct: 114 MTEQQFVQQLASEGVSINEFRASIRRQLTMRSITEGLVSRRIRISEQEVDNFLKSADAQF 173
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ + + ++ AI + + + A S +
Sbjct: 174 WVSPDYHLGHILVALPSSPSSEAIVEAEEKANALYEKLKAGANFAEVAIAESNGPSALQG 233
Query: 242 KEKKIEISN---------------------------DELQAEYEKNKEKYFSPEIRTVEQ 274
+ S + YE +
Sbjct: 234 GDLGWRKSAELPTLFAELLPSLNNGDVTKPTRSQAGFHIIKLYESRGGQKQIVNQTRARH 293
Query: 275 LVFPNQK---------EADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIP 321
++ + + + Q + G F +LA+ + +S LG +
Sbjct: 294 ILVKTSEILNDAKAEAKLKDIRQQILDGADFAELAKTHSEDIGSRMSGGDLGWATPGTFV 353
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
+ + K+G+ + FG+ I V + +K M
Sbjct: 354 PA--FEKTMAETKEGEISQPFKSRFGWHIMKVEERREEDMTQEALRQKARNMIMSRRFED 411
Query: 382 EKVKEDYKRLEEFLALGT 399
E + +E
Sbjct: 412 ETQIWLQELRDEAFIDIK 429
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 16/230 (6%), Positives = 60/230 (26%), Gaps = 3/230 (1%)
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
E +++ + + + G + LF
Sbjct: 199 EAEEKANALYEKLKAGANFAEVAIAESNGPSALQGGDLGWRKSAELPTLFAELLPSLNNG 258
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ +++ ES + + + + + + + + + +
Sbjct: 259 DVTKPTRSQAGFHIIKLYESRGGQKQIVNQTRARHILVKTSEILNDAKAEAKLKDIRQQI 318
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571
+G +F ++ K + + + + + E P ++ +
Sbjct: 319 LDGADFAELAKTHSEDIGSRMSGGDLGWATPGTFVPAFEKTMAETKEGEISQPFKSRFGW 378
Query: 572 VVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ KV + + K + + +D + L+ + + +
Sbjct: 379 HIMKVEERREEDMTQEALRQKARNMIMSRRFEDETQIWLQELRDEAFIDI 428
>gi|255524040|ref|ZP_05391002.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
carboxidivorans P7]
gi|296186897|ref|ZP_06855298.1| PPIC-type PPIASE domain protein [Clostridium carboxidivorans P7]
gi|255512327|gb|EET88605.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
carboxidivorans P7]
gi|296048611|gb|EFG88044.1| PPIC-type PPIASE domain protein [Clostridium carboxidivorans P7]
Length = 341
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 74/210 (35%), Gaps = 10/210 (4%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVS----GSSTVVSVGRQKVPFSSFIN--SWKQELGM 66
V K+ VL F + + + + +S V +V +K+ + + +
Sbjct: 4 VKKLVSAVLISAFAFSTVGCNMIAKTPEAIKNSVVATVNGEKITRGELDSNPNLMGVVAQ 63
Query: 67 ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEI-ARS 122
I Q+ G L + ++LD ++ ++Q +++ + D ++ E+ +
Sbjct: 64 IKQQYGEDYEKNDDAKSILKEQKAQVLDTMIEAKVIEQKAKELKVLPDDAKLKAEVDKQI 123
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
+ F + L ++ + E+ + Y + + V + + D++
Sbjct: 124 SNIKQQQFGNDATKFQAALKQQNLTEETLKNMYYTQMKNQETVTNVTNNVGKDVKVDDKS 183
Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ Y++N + +R A
Sbjct: 184 IQDYYKNNPYKFTEKPDRIHTAHILVKTED 213
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 56/163 (34%), Gaps = 13/163 (7%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
I++ K E + VKT +E V +G++F + K +
Sbjct: 184 IQDYYKNNPYKFTEKPDRIHTAHILVKTEDEAKK-----VKARLDKGEDFAKVAKEVSTD 238
Query: 528 LLTTN---QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
T + + ++ + F ++ + V P+++ Y + K + PV
Sbjct: 239 TATKDKGGDLGFVNYVDSGFDAAFMAGAIALKKGAV-SAPVKSQFGYHIIKCIEKEEYPV 297
Query: 585 QE----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
++ K + + L + +A K +T ++ +
Sbjct: 298 KKIDAVKAQIKTQLETEQKQKKYQDKVAEWKKSAKITKNEKNL 340
>gi|83720338|ref|YP_441133.1| survival protein SurA [Burkholderia thailandensis E264]
gi|257140205|ref|ZP_05588467.1| survival protein SurA, putative [Burkholderia thailandensis E264]
gi|122070640|sp|Q2T116|SURA_BURTA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|83654163|gb|ABC38226.1| survival protein SurA, putative [Burkholderia thailandensis E264]
Length = 448
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 38 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERI 92
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + N D + +R+ +G+ ++
Sbjct: 93 QVQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDLFVRDARTE 148
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V + + + + P+NA
Sbjct: 149 LMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGAQQDLRLEHIFVKAPTNAP 202
Score = 46.8 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 35/370 (9%), Positives = 99/370 (26%), Gaps = 9/370 (2%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ K+ + +LA+ G L +
Sbjct: 74 PPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQANGMPLDQYKARIEA 133
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ D+ + D+ L + A V++ S ++D+ +
Sbjct: 134 QGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGAQQDLRLEHI 193
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
KA + + A G ++ + + G P
Sbjct: 194 FVKAPTNAPQADIDAAQKKAEGLLQQALASGTNFERLAKSQSEADDAKKGGDLGFKAPSS 253
Query: 437 --EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ V + +PDG + + +++ +
Sbjct: 254 LPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVDRRASQNPAASPKIVQTHVRHILLRV 313
Query: 495 TAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ S+A Q +++ + G +F + + +Q + + +
Sbjct: 314 GEGKSESQARQQLIDIRRQIEAGGDFEKFARTYSQD-GSASQGGDLGWISPGETVPEFER 372
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIA 608
+ + P+ Y + +V + + + + Q + +
Sbjct: 373 AMNALQDGQVSNPVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLR 432
Query: 609 YLKSQYSVTV 618
L+ V +
Sbjct: 433 ELRDSSYVQI 442
>gi|317153442|ref|YP_004121490.1| SurA domain-containing protein [Desulfovibrio aespoeensis Aspo-2]
gi|316943693|gb|ADU62744.1| SurA domain protein [Desulfovibrio aespoeensis Aspo-2]
Length = 312
Score = 73.4 bits (177), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/159 (13%), Positives = 56/159 (35%), Gaps = 8/159 (5%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
+ + + L++ + +V V + + L I G +N
Sbjct: 5 IFLFISLFLLVFSTNSLAVESVYDKILVKVNEDIITQYELDEEMRPILASIK---GRELN 61
Query: 77 SERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ L ++ LD +V+ + Q I+ + + EI R ++ + +
Sbjct: 62 EAEREQLADLRRQTLDRMVNDLLMTQEIKKFQITVTDTVIDDEIRRMK----EERGLTDE 117
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
F + R+G+ +E+ ++ + +++G V
Sbjct: 118 AFEEMVKRDGLTIQEFRSKLKGLIEKQELLGYMVHSKVV 156
>gi|332981378|ref|YP_004462819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mahella
australiensis 50-1 BON]
gi|332699056|gb|AEE95997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mahella
australiensis 50-1 BON]
Length = 350
Score = 73.0 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/400 (12%), Positives = 121/400 (30%), Gaps = 66/400 (16%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
+V F L V V K+ + ++ + + + Q+ G
Sbjct: 7 MTALAMVAIFIFAGCSLVTVDPEKEKQLPVAEVNGDKILKADYVKQYDAYINAVEQQYGI 66
Query: 74 VVNSERARSV------GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+ + + + I++ L++ +DQ + + +
Sbjct: 67 DKKTLETSTDYADTLAQMREDIVEGLITQKLVDQQAKKNNIALTDDDKKQVKDQLQQLKD 126
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
+ + F L ++ + E E + + G
Sbjct: 127 A---YGEEAFADMLKQQQMTEAELEQLLQGDAVQQKLFDQLTAG---------------- 167
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
++ + +++++ KD + ++K
Sbjct: 168 ------------------ITVTDEEVKKYYDENKDTEFTDPEMVKVSHILISIPEDKY-- 207
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
S + T + + EA++ K G F +L ++
Sbjct: 208 ------------------SADETTKKTEYDKIKPEAEQVLAKAKAGDDFAELVKQYSDDA 249
Query: 308 SDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
G +FS+E + + ++ F+L KGD + ++ S+GY I + PS +F
Sbjct: 250 GTKDQGGTLTFSREDQIEPAFIEASFALKNKGDISGLVQTSYGYHIIRLEEKIPSKVHTF 309
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+E K++I + + K ++K+ + ++ +
Sbjct: 310 EEKKQEIHDTLLQQKKNDKITALIEEWKKGSDIKKYEKNY 349
>gi|126641683|ref|YP_001084667.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
baumannii ATCC 17978]
gi|126387567|gb|ABO12065.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
baumannii ATCC 17978]
Length = 286
Score = 73.0 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/272 (18%), Positives = 97/272 (35%), Gaps = 11/272 (4%)
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
+VS L Q E +G+ ++ +A+ P ++ +FS ++ + L G+ + I
Sbjct: 1 MVSRNLLIQQAEKLGISLSDAQIEQMLAQQPSLQ-ENGQFSQKLYENYLRSIGMTSEGLI 59
Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ + + F S + L Q E R++ + SN
Sbjct: 60 ASLRQDHALKMLTSTFADYSLVSKVDLMQIANLQTEQRTLHLASIKLDPYKTGLTASNQE 119
Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
T ++ K+++ ++ P + Y++ K ++ EL+ Y K E R V
Sbjct: 120 ATDYYNKHQNEFKQPASVDVDYVVLSPSLMAKPAPATDAELKQAYAKFVETQQKDAKRIV 179
Query: 273 EQLVFPNQKEADEAFQ--------SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD-- 322
+ ++ D A Q ++ G F Q A + + + + G + Y P
Sbjct: 180 KHILITTDARDDAAAQKLAKDVYAKIQGGLSFAQAAAQFSEDPTSKTKGGLVEAYAPGVF 239
Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
D K G + + +GY I
Sbjct: 240 SDAFDKTVLSLKNGQISQPVKTQYGYHIIEAE 271
>gi|332665327|ref|YP_004448115.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
hydrossis DSM 1100]
gi|332334141|gb|AEE51242.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
hydrossis DSM 1100]
Length = 702
Score = 73.0 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 70/626 (11%), Positives = 164/626 (26%), Gaps = 62/626 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL--SDALFSVSGSSTVVSVGRQKVPFSSFINS 59
+ IRK + + + + + + F+I + + S ++ + QKV + F
Sbjct: 4 ISTIRK--NSALIVVLIALGLLGFIIQDMMGGQSSIFGSIQPSIGKINGQKVDLNEFNR- 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
E + + G + + D V A +DQ +G+ +
Sbjct: 61 --TESILYAGSTGDIYAR--------RSALWDYFVEKALIDQEAAKLGIGVSKNELID-- 108
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG-MFVGGMRPSNLL 178
+F + + R ++D T L+R +
Sbjct: 109 ----------LQFGPEPSPIIMQR-------FMDQTTGQLNRQQLNSLKQQISTNTLPAT 151
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
+ D I ++ + + + + + +K + RI + D
Sbjct: 152 ARSYWAIQEQEIVKDRIQTKLVNMVSKGLYTPSWVAEMSQKESATMMDLLFTRIPFDAVD 211
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
E E + L+ K + +I V V P + ++ + G
Sbjct: 212 NAEVSVSDEDYANYLKENPGLFKYDEEARKIGLVTFEVKPTKADSLAQRNKI-VGLINDW 270
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIF--SLAKKGDFTPVIHGSFGYVIAHVSNI 356
+ +LG+ Y+ L G Y + +
Sbjct: 271 RQAPNDTVFVEQNLGTIDGAYVKREGLLQFADSIFNLPIGGIFGPYVEGNAYRAVKLLDR 330
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ + + +T + + +++ R
Sbjct: 331 --KVIPDSVKSRHILIRPDAVTPLAVIKTRLDSIKNVIETGKATFADMALRFGQDGTSTT 388
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D + G + K +TV G+++ V++ +
Sbjct: 389 GGDLGYTALGGMVKPY--------NDLIFFQAEQGKLYTVETQFGAHL-VEVTGKKVTSN 439
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL-GASLLTTNQIN 535
V + + +T +A + + +K+ + K + G + T+ +N
Sbjct: 440 ASGVRVAYIGEVIKPSKETENRRFEEAQRFLNANNKDVETLLAAAKKVKGLTQETSAAVN 499
Query: 536 RMDNENKFF-----GYDGISQVFSGPVEMVKCFPIENGLS-------YVVFKVTNSKVGP 583
+ + I F V + YV+ +
Sbjct: 500 ANEFFLGSLGSGQQPREIIRWAFGAQKGQVAPDIYTFTDATEFYTNKYVLAGLKAVLGPG 559
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAY 609
D+ + + +IA
Sbjct: 560 RATADQVKEDIETAVINRKKGELIAE 585
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 60/583 (10%), Positives = 153/583 (26%), Gaps = 38/583 (6%)
Query: 61 KQELGMISQKIGFVVNSERARSV--GLDKKILDNLVSGATLDQFIE---------DIGLE 109
+Q+L + Q+I ARS +++I+ + + ++ + ++ +
Sbjct: 133 RQQLNSLKQQISTNTLPATARSYWAIQEQEIVKDRIQTKLVNMVSKGLYTPSWVAEMSQK 192
Query: 110 ADHGRVWGEIARSP--LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ R P + S + + + L K + L +V
Sbjct: 193 ESATMMDLLFTRIPFDAVDNAEVSVSDEDYANYLKENPGLFKYDEEARKIGLVTFEVKPT 252
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+ N ++ + ++ N + L Q+ + +
Sbjct: 253 KADSLAQRNKIVGLINDWRQAPNDTVFVEQNLGTIDGAY-VKREGLLQFADSIFNLPIGG 311
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ K ++ D +++ + + +P + +
Sbjct: 312 IFGPYVEGNAYRAVKLLDRKVIPDSVKSRHILIRPDAVTPL----AVIKTRLDSIKNVIE 367
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ G S + LG + + D IF A++G + FG
Sbjct: 368 TGKATFADMALRFGQDGTSTTGGDLGYTALGGMVKP-YNDLIFFQAEQGKL-YTVETQFG 425
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ V+ K + S V + + E+ +R + +
Sbjct: 426 AHLVEVTGKKVTSNASGVRVAYIGEVIKPSKETENRRFEEAQRFLNANNKDVETLLAAAK 485
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD------G 461
+ + + + +++ FG D
Sbjct: 486 KVKGLTQETSAAVNANEFFLGSLGSGQQPREIIRWAFGAQKGQVAPDIYTFTDATEFYTN 545
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
Y+ +K + ++V D++ K E ++ K GK +
Sbjct: 546 KYVLAGLKAVLGPGRATADQVKEDIETAVINRKKGELIAEKLK---------GKQVQAAA 596
Query: 522 KNLGASLLTTNQINRMD---NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+ T + N + F I YVV +
Sbjct: 597 AQYSVKVDTLRNVRFNQSFLPNNVGSEPRLNAYAFKLKQGQTSQPIIGANGVYVVNAQSI 656
Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
S + ++ + L+ + + + + ++ +
Sbjct: 657 STPNSATDLNQLKTTLSGNARAQVSNRFMPAFRKSAKISDKRS 699
>gi|167561603|ref|ZP_02354519.1| survival protein SurA, putative [Burkholderia oklahomensis EO147]
Length = 452
Score = 73.0 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V ++ L ++L+ +V
Sbjct: 41 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPIDQ-----LRAQVLNQMVLERI 95
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + N D + +R+ +G+ ++
Sbjct: 96 QIQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDVFVRDARTE 151
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V G + + + + P++A
Sbjct: 152 LMLSKLREKEVDGKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPTSAP 205
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 42/370 (11%), Positives = 98/370 (26%), Gaps = 12/370 (3%)
Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
+E++ K+ + +LA+ G L ++ DV
Sbjct: 85 QVLNQMVLERIQIQRAKDDGIVVDNATVQATLGRLAQANGMPLDQYKARIEAQGVPWDVF 144
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ D+ L + G A V++ S ++D+ + KA
Sbjct: 145 VRDARTELMLSKLREKEVDGKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPTSA 204
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK--EQLLFR 442
+ + + A G ++ + + G P ++
Sbjct: 205 PQADIDVAQKKAEGLLQQALASGADFERLAKNNSEADDAKKGGDLGFKSPSSLPSDVVDA 264
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKES--IPARDRKLEEVLTDVKKDWKTV---KTAE 497
V V +PDG + + + V T V+ V K+
Sbjct: 265 VSKLRPGQVNPTLVRVPDGFEIVRLVDRRASQSVSAASPKIVQTHVRHILLRVGEGKSES 324
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ + + + G +F + + + + + S
Sbjct: 325 QARQQLIDIR-RQVEAGGDFEKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNSLQD 383
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQY 614
V P+ Y + +V + + + + Q + + L+
Sbjct: 384 GQVSN-PVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLRELRDSS 442
Query: 615 SVTVHDNLIQ 624
V + ++Q
Sbjct: 443 YVQIKLPVVQ 452
>gi|34499685|ref|NP_903900.1| survival protein surA [Chromobacterium violaceum ATCC 12472]
gi|81711632|sp|Q7NQB0|SURA_CHRVO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|34105536|gb|AAQ61890.1| survival protein surA precursor [Chromobacterium violaceum ATCC
12472]
Length = 429
Score = 73.0 bits (176), Expect = 1e-10, Method: Composition-based stats.
Identities = 57/438 (13%), Positives = 125/438 (28%), Gaps = 61/438 (13%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K L +L + L+ V V V + + + + + + +
Sbjct: 3 KTLLALLIASVMQSALAAPATPVREVDRIVAVVNKNVITWQELQARVNEAIKQLEAQKVA 62
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
E L++++L+ +++ Q+ GL + V +A K NK S
Sbjct: 63 PPPRE-----VLERQVLEQMITEEVQLQYAASGGLRIEDAAVDQAVANL----AKQNKLS 113
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM-RPSNLLLDQAKRFYFENRSV 192
++LA++GI + L+ + + V S+ +DQA +
Sbjct: 114 EAGLKAQLAKDGITLDRLRADIRRELTISRLRDSEVASRVNVSDSEVDQAMKSAQSANRT 173
Query: 193 DYI------VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
+Y + R D + + + + + +
Sbjct: 174 EYHLASILVAVPERADAKQIDQLSQKVHKAQADLAAGQPFAKVSAAYSDAPNALKGGDMG 233
Query: 247 EISNDELQAEYEKNKEKYFS-----------------------------PEIRTVEQLVF 277
S L E+ + E+ E ++
Sbjct: 234 WRSATSLPQEFVQLLEQMKVGADTDVIRTQQGFFIFKLVDKRSGGAPMMVEQYHPRHILI 293
Query: 278 PNQKEADE---------AFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSL 325
+ E + +G KF +A+ + S LG + +
Sbjct: 294 RTNEAVSEADAKARIDQVRDRIMRGAKFADMAKLYSEDGSNAKGGDLGWVNMGDLVPE-- 351
Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
+ G + + FG+ + V + S K + Q+R K +
Sbjct: 352 FEKAMVSLPIGQVSQPVRTPFGWHLILVEGKRNQDVSS-DHEKMAVKQQIRARKMEQAYT 410
Query: 386 EDYKRLEEFLALGTSMDE 403
+ ++L + + +DE
Sbjct: 411 DWVRQLRDSAFVEEHLDE 428
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 26/242 (10%), Positives = 61/242 (25%), Gaps = 5/242 (2%)
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
A + + + + + + +++ + + D G
Sbjct: 183 AVPERADAKQIDQLSQKVHKAQADLAAGQPFAKVSAAYSDAPNALKGGDMGWRSATSLPQ 242
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
F + + D V + ++ + + E +T + E
Sbjct: 243 EFVQLLEQMKVGADTDVIRTQQGFFIFKLVDKRSGGAPMMVEQYHPRHILIRTNEAVSEA 302
Query: 500 SSKAN-QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
+KA V + G F D+ K + + + S P+
Sbjct: 303 DAKARIDQVRDRIMRGAKFADMAKLYSEDGSNAKGGDLGWVNMGDLVPEFEKAMVSLPIG 362
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQ---EKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
V P+ + + V + V EK + + + L+
Sbjct: 363 QVSQ-PVRTPFGWHLILVEGKRNQDVSSDHEKMAVKQQIRARKMEQAYTDWVRQLRDSAF 421
Query: 616 VT 617
V
Sbjct: 422 VE 423
>gi|295111546|emb|CBL28296.1| SurA N-terminal domain. [Synergistetes bacterium SGP1]
Length = 368
Score = 73.0 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 71/221 (32%), Gaps = 16/221 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW-------GLSDALFSVSGSSTVVSVGRQKVPF 53
ML+ +R + + I + L FL++ G S + V +V + +
Sbjct: 1 MLKNLRTHMKWIMITIVVAFLLSTFLMYEGRSGRRGPSRSADGTMTDYEVAAVDGRPLMR 60
Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
S N + L + ++ + + +LD V L+ ++ +
Sbjct: 61 SELENRLRAYLENSGLRNAASLDL-----PAVYQAVLDQYVLERQLESEVKKADIAISDA 115
Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
+ + + + F + L R+GI+ EY + L+ ++ M VG +
Sbjct: 116 DAEQAMKA----YADSAFPTREAFYAALERQGISSAEYKKSLARQLAVQQLLHMAVGDVT 171
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
S + + +N + A L
Sbjct: 172 VSEDEAVKFYDSIKDQLFRTPAGVNLQVARFGASADAEALR 212
>gi|92113046|ref|YP_572974.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
salexigens DSM 3043]
gi|122070642|sp|Q1QZ33|SURA_CHRSD RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|91796136|gb|ABE58275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chromohalobacter
salexigens DSM 3043]
Length = 435
Score = 73.0 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 52/450 (11%), Positives = 120/450 (26%), Gaps = 69/450 (15%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R S ++ + LV + + V V + + S + Q
Sbjct: 1 MRLRSFAFLGFMLLVAMAPSMA------SAQPQPLDRIVAVVNKDAIMQSRLEDRVTQVR 54
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
++ + N L +++LD ++ Q E L D ++ +
Sbjct: 55 RQMASRNVPAPNEAD-----LRRQVLDRMILEQIQLQMAERANLSIDDTQLNATVRGI-- 107
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
+DN S D F L +G++ + + + V V +
Sbjct: 108 --AEDNGMSMDEFADALEEDGMSLASMREQVRREMLLRQVQQSQVASRVNVTDREVERYL 165
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS----------- 233
+ L + V P+ + Q K +D YR +
Sbjct: 166 DQQGETADTAYHLAHILVSVPESPTPEQVEQAQAKVRDLYRQLQNGANFAQLATAESDGQ 225
Query: 234 ---------------------------YILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
+L + E+
Sbjct: 226 QALSGGDLGWRRGDQLPSLFADVVPTLSNGEVSEPIRSPSGFHLVKLIDTRGQQGEQKRV 285
Query: 267 PEIRTVEQLVFPNQKEADEA---------FQSLKKGKKFIQLAEEQGKSL----SDISLG 313
V ++ ++ Q + G+ F LA+E LG
Sbjct: 286 VTENRVRHILIGTNPNRNDQQAEALARDIRQRIANGESFAALAQEYSDDDGSALDGGELG 345
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + D++ G+ + + FGY + + + + ++ I
Sbjct: 346 WTRPGQMV-PAFEDAVK-ALDVGELSQPVRSRFGYHVIELEDRRRQDVTR-DAQREQIRQ 402
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDE 403
+ K S++++ + + + +++
Sbjct: 403 TLFQRKVSDEMEAWTQEIRSGAYIDNRLED 432
>gi|167568839|ref|ZP_02361713.1| survival protein SurA, putative [Burkholderia oklahomensis C6786]
Length = 449
Score = 73.0 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 51/174 (29%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V ++ L ++L+ +V
Sbjct: 38 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPIDQ-----LRAQVLNQMVLERI 92
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + N D + +R+ +G+ ++
Sbjct: 93 QIQRAKDDGIVVDNATVQATLGRL----AQANGMPLDQYKARIEAQGVPWDVFVRDARTE 148
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V G + + + + P++A
Sbjct: 149 LMLSKLREKEVDGKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPTSAP 202
Score = 47.2 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 42/370 (11%), Positives = 98/370 (26%), Gaps = 12/370 (3%)
Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
+E++ K+ + +LA+ G L ++ DV
Sbjct: 82 QVLNQMVLERIQIQRAKDDGIVVDNATVQATLGRLAQANGMPLDQYKARIEAQGVPWDVF 141
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ D+ L + G A V++ S ++D+ + KA
Sbjct: 142 VRDARTELMLSKLREKEVDGKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPTSA 201
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK--EQLLFR 442
+ + + A G ++ + + G P ++
Sbjct: 202 PQADIDVAQKKAEGLLQQALASGADFERLAKNNSEADDAKKGGDLGFKSPSSLPSDVVDA 261
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKES--IPARDRKLEEVLTDVKKDWKTV---KTAE 497
V V +PDG + + + V T V+ V K+
Sbjct: 262 VSKLRPGQVNPTLVRVPDGFEIVRLVDRRASQSVSAASPKIVQTHVRHILLRVGEGKSES 321
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ + + + G +F + + + + + S
Sbjct: 322 QARQQLIDIR-RQVEAGGDFEKFARTYSQDGSASQGGDLGWISPGETVPEFERAMNSLQD 380
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQY 614
V P+ Y + +V + + + + Q + + L+
Sbjct: 381 GQVSN-PVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLRELRDSS 439
Query: 615 SVTVHDNLIQ 624
V + ++Q
Sbjct: 440 YVQIKLPVVQ 449
>gi|238752276|ref|ZP_04613756.1| Chaperone surA [Yersinia rohdei ATCC 43380]
gi|238709544|gb|EEQ01782.1| Chaperone surA [Yersinia rohdei ATCC 43380]
Length = 434
Score = 73.0 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 9/154 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + ++ + V V S + +Q+ G V +
Sbjct: 7 LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLN-AQQAGQQVPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L ++L+ L+ L Q + +G+ + IA N+ + SR
Sbjct: 64 --GTLRHQVLERLIMDNILLQMAKKMGITVSDEALDKAIADIAA----QNRMTPAQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
LA +G+N Y + K + ++V V
Sbjct: 118 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRIT 151
Score = 38.7 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 29/371 (7%), Positives = 91/371 (24%), Gaps = 9/371 (2%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++ ++ K+ K +A + + + +
Sbjct: 58 QQVPDDGTLRHQVLERLIMDNILLQMAKKMGITVSDEALDKAIADIAAQNRMTPAQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ D + + + V ++ + +
Sbjct: 118 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I ++ + EE S + ++I D +
Sbjct: 178 HILIPLPENPSQQQVDQAEELAKKLASDIKAGADFGKLAI-ANSADSQALKGGQMGWGKL 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWK 491
L + G + +++ + E +
Sbjct: 237 QELPSLFAERLQSAKKGDIVGPIRSGVG-FHILKVNDIRGADKTVSVTELHARHILLKPS 295
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGIS 550
V T ++ +K + + +F I K + + Q + +
Sbjct: 296 PVMTDDQARAKLSAAAADIKSGKASFATIAKEISQDPGSAMQGGDLGWASPDIYDPAFRD 355
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
V + P+ + + + ++ + +KD+ L + + +
Sbjct: 356 AVMKLQKGEI-SAPVHSSFGWHLIQLVDSRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWM 414
Query: 608 AYLKSQYSVTV 618
++ V +
Sbjct: 415 QEQRAAAYVKI 425
>gi|94266120|ref|ZP_01289835.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
proteobacterium MLMS-1]
gi|93453317|gb|EAT03757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
proteobacterium MLMS-1]
Length = 335
Score = 73.0 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/300 (9%), Positives = 78/300 (26%), Gaps = 7/300 (2%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + S + Q+ + E+A + +++L ++
Sbjct: 38 DRVVAEVNGEIITMSELEREMAGVEQQVLQQA-PAADREQALTEA-RQQVLSGMIDRLLA 95
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + +G+ V IA+ DN+ + + + +AR + + Y +
Sbjct: 96 RQQADRLGIRVGEREVDEAIAQILA----DNRITMEELEAEIARHHGSMENYRRDLQTQI 151
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV-LNNRHVPAIADPSNAVLTQWFE 218
++ ++ V + + + P + +
Sbjct: 152 LQSRLLSQEVRERVVIPERRIKEYYQQHHQEQTSPEEAYHILQIGFNWPPGDDEAREQAR 211
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ + + + + ++ +L + I +E
Sbjct: 212 RQAEEIHRQARQGADFRELARRYSDLPSARNDGDLGVFQKDELAGIMLEHIPELEPGEIS 271
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
E +Q K +L + + + + + L +
Sbjct: 272 TILETAAGYQFFKLLSNQGELRATGSYEELKGKIREKLYQQALEEQFSKWVKELRENDYI 331
>gi|221069847|ref|ZP_03545952.1| SurA domain protein [Comamonas testosteroni KF-1]
gi|220714870|gb|EED70238.1| SurA domain protein [Comamonas testosteroni KF-1]
Length = 475
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/234 (12%), Positives = 63/234 (26%), Gaps = 9/234 (3%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
S V V + + + + ++++ G + + L +++L+ L+
Sbjct: 68 SADYIVAVVNSEPITNNEVRARMARVAQNVTEQGGQLPS-----QSELARQVLERLIVER 122
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
Q D G+ D+ V +A + N VSRL EGI+E ++
Sbjct: 123 VQLQEARDTGINVDNLAVDQAVANV----ARQNSTDRAGLVSRLKAEGISEAQFRAEIRS 178
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ V V G + +
Sbjct: 179 QMLMQRVRERDVDGRVKVTEADIDRYLKEQKRPGEAAAGAAANLGHILITVPENASPAVV 238
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
E+ + + F +E + A + Y ++
Sbjct: 239 EEREARAKQAAEAARKNPDFIAAVREFSDVPNGQGGGAMGMRAMSDYPELFVQQ 292
>gi|21230267|ref|NP_636184.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66769740|ref|YP_244502.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
campestris str. 8004]
gi|81304306|sp|Q4UR41|SURA_XANC8 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|81796311|sp|Q8PCE1|SURA_XANCP RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|21111813|gb|AAM40108.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66575072|gb|AAY50482.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
campestris str. 8004]
Length = 463
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/186 (12%), Positives = 50/186 (26%), Gaps = 9/186 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + +L + + L+ A S V V S + + +
Sbjct: 2 TKPFSVLLASLLVITSTVSPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAG 61
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ LV E G+ + IA +
Sbjct: 62 RDNQ-LPPDDV----LQRQVLERLVLVKLQVGRAEGSGIRVSDEELNRAIASI----AQQ 112
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
N S D +LA +G+ ++ + + F +
Sbjct: 113 NGTSVDGLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAT 172
Query: 190 RSVDYI 195
Y
Sbjct: 173 TGSQYH 178
>gi|238786686|ref|ZP_04630487.1| Chaperone surA [Yersinia frederiksenii ATCC 33641]
gi|238725054|gb|EEQ16693.1| Chaperone surA [Yersinia frederiksenii ATCC 33641]
Length = 434
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 9/154 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + ++ + V V S + +Q+ G V +
Sbjct: 7 LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLN-AQQAGQQVPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L ++L+ L+ L Q + +G+ + IA N+ + D SR
Sbjct: 64 --GTLRHQVLERLIMDNILLQMAKKMGITVSDEALDKAIADIAA----QNRMTPDQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
LA +G+N Y + K + ++V V
Sbjct: 118 LAADGLNYNTYREQIRKEMLTSEVRNNEVRRRIT 151
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 19/198 (9%), Positives = 52/198 (26%), Gaps = 7/198 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G+ + LF + + +++ + E
Sbjct: 229 GQMGWGKLQELPSLFAERLQSANKGDVVGPIRSGVGFHILKVNDIRGADKTVSVTEIHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V T E+ +K + + +F I K + + Q +
Sbjct: 289 HILLKPSPVMTDEQARAKLSAAAADIKSGKSSFATIAKEISQDPGSAMQGGDLGWASPDI 348
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ V + P+ + + + +V + +KD+ L
Sbjct: 349 YDPAFRDAVMKLQKGEI-SAPVHSSFGWHLIQVIDNRQVDKTDAAQKDRAYRMLFSRKFA 407
Query: 601 DLLDSVIAYLKSQYSVTV 618
+ + + ++ V +
Sbjct: 408 EEAQTWMQEQRAAAYVKI 425
>gi|288575146|ref|ZP_06393503.1| hypothetical protein Dpep_2422 [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570887|gb|EFC92444.1| hypothetical protein Dpep_2422 [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 350
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/186 (13%), Positives = 65/186 (34%), Gaps = 12/186 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFIN 58
ML +R + + L + L++G+ S S + V + +K+ S +
Sbjct: 1 MLRTLRTQVKWILVFFLLCFVLAIPLMYGVGGGKSSRSSNEDYAVAEIDGKKLMRSQLLR 60
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
S + + + + + + +LD +V L + ++ +G+ +
Sbjct: 61 SVQDYVERA-----GIKDVTSTDLPMIRQMVLDQMVVQEALLKEVKALGITPSKEELDQA 115
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
++ +D + + F+ L GI + + LS+ ++ + ++
Sbjct: 116 VSGI-----EDQFPTKEAFMQYLQETGITMNDLREQLKTQLSQQMLLEEASAAAKVNDEE 170
Query: 179 LDQAKR 184
L
Sbjct: 171 LQALYD 176
>gi|330955092|gb|EGH55352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
Cit 7]
Length = 440
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S D F + LA +G++ + + + +
Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVDQFRAALAHDGLSYNDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|188992953|ref|YP_001904963.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris
str. B100]
gi|167734713|emb|CAP52923.1| Peptidylprolyl isomerase [Xanthomonas campestris pv. campestris]
Length = 463
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/186 (12%), Positives = 50/186 (26%), Gaps = 9/186 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + +L + + L+ A S V V S + + +
Sbjct: 2 TKPFSVLLASLLVITSTVSPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAG 61
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ LV E G+ + IA +
Sbjct: 62 RDNQ-LPPDDV----LQRQVLERLVLVKLQVGRAEGSGIRVSDEELNRAIASI----AQQ 112
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
N S D +LA +G+ ++ + + F +
Sbjct: 113 NGTSVDGLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAT 172
Query: 190 RSVDYI 195
Y
Sbjct: 173 TGSQYH 178
>gi|212702600|ref|ZP_03310728.1| hypothetical protein DESPIG_00626 [Desulfovibrio piger ATCC 29098]
gi|212674041|gb|EEB34524.1| hypothetical protein DESPIG_00626 [Desulfovibrio piger ATCC 29098]
Length = 320
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 62/175 (35%), Gaps = 8/175 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL-DKKILDNLVSGAT 98
+ V Q + + ELG + ++A V + +K+LD+++
Sbjct: 33 NKIAAVVNGQVITMFDLQKAALPELGRARLNPN---DPKQADKVNVVFRKVLDSMIMDIL 89
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
L+Q + + + A + E+ + + + F + L ++G++ E
Sbjct: 90 LEQEAKRLSITASDSEIDQELTKMMKMR----RMNRAQFEAELKKQGMSVDELRKTMKTN 145
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
+ R V+G VG +A ++ D L+ + + + +
Sbjct: 146 MLRQRVMGAEVGRRVVVTDDEIRAYYEKHKDTMYDRNGLHMGLIVYNPNVNARSI 200
>gi|289676168|ref|ZP_06497058.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
pv. syringae FF5]
gi|330938460|gb|EGH42067.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
pv. pisi str. 1704B]
Length = 440
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 86 LQMGERSGIRVSDEELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|187250598|ref|YP_001875080.1| hypothetical protein Emin_0179 [Elusimicrobium minutum Pei191]
gi|186970758|gb|ACC97743.1| hypothetical protein Emin_0179 [Elusimicrobium minutum Pei191]
Length = 231
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/206 (11%), Positives = 63/206 (30%), Gaps = 3/206 (1%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
G + +S T+ VG +K+ + +Q+ + + + +
Sbjct: 19 FIGGLFYAGYNSFSVGLSNHETIAKVGNEKIKARQYNRIVEQQERELRRLATEDFDDDGG 78
Query: 81 RSVG-LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
+ L ++ L L+ + + Q E G+ + I +P F + FS +V
Sbjct: 79 SLLNYLKQRALQTLMFQSAMVQSAEKYGIHTPDFEIAYMIQTAPAFTN-NGLFSKQAYVW 137
Query: 140 RLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
+ + + E+ + + + + + + + + L + +
Sbjct: 138 TVRNQLMMTPAEFENQERRNMQMNKMANIIMSSYKSTPEELLFNYKTQYGTIKDYAKKKE 197
Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNY 224
+ S A + +
Sbjct: 198 DFIPTVAETKSLAAQDAFLIDFNSKN 223
>gi|330980962|gb|EGH79065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
pv. aptata str. DSM 50252]
Length = 442
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 33 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 87
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 88 LQMGERSGIRVSDEELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 143
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 144 IISRVRQRRVA 154
>gi|261414929|ref|YP_003248612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261371385|gb|ACX74130.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302327509|gb|ADL26710.1| peptidyl-prolyl cis-trans isomerase SurA [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 427
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 50/496 (10%), Positives = 125/496 (25%), Gaps = 81/496 (16%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ + F + + V V + + S F+N+ + +
Sbjct: 6 IASLVFALS-VGCFAEPVLMEGIAAVVDGKPIMRSEFMNNLYR--------FQDTPEAAS 56
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
+ +L+ ++ L I+ + V + S
Sbjct: 57 MTEQQQKEAVLNRMIEEKVLLSRIDRDSIVISENEVDQRVTS--------------HLQS 102
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
A + I+ L + + G + + + R
Sbjct: 103 IAASQKIDMATLEKAVRAQLGLSMIQYREQLGKQIRSHMEISRVRQL------------- 149
Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
P+ + +++ YKD+ + + + + I S +
Sbjct: 150 --HVGTIHPTKKEVDVFYKDYKDSLPRQFNCVLLSHIQLPIKPDSMIVDSVKHVAEALID 207
Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
+ E+ + + LG F +
Sbjct: 208 SLNLGIKFELLAQRH--------------------------SQDSTAAKGGDLGYFKRG- 240
Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
+ D + +I L + + G+ IA V +K+ +
Sbjct: 241 LLDPAFEKAIERLKNGHYASTPVKTDLGWHIARVLG------------RKEDGVRSAQIL 288
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
LA + S+ E + D + G + +
Sbjct: 289 LRTIPTAKDSAAVLALADSLRNNIKSKDEFAKAAKKFSEDKSSNFQGGLLGWFQRNEMEP 348
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK----KDWKTVKT 495
+ + + + + DG+Y ++ +S R+ LEE ++ + K
Sbjct: 349 AYVDPVANLNVGEISEPVMIDGAYHLFRLDDSRQVRELTLEEDYGKIELMAATHLENEKL 408
Query: 496 AEEVSSKANQLVLEYS 511
+ + ++++E
Sbjct: 409 QKLIQKWRKEVLVEIR 424
>gi|20808913|ref|NP_624084.1| parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
tengcongensis MB4]
gi|46396955|sp|Q8R760|PRSA_THETN RecName: Full=Foldase protein prsA; Flags: Precursor
gi|20517573|gb|AAM25688.1| Parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
tengcongensis MB4]
Length = 306
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 10/123 (8%)
Query: 19 VVLFVPFLIWGLSDALFSVS----GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+ LF+ + G+S S V V +K+ + + ++Q I +
Sbjct: 5 IALFLALIFVGVSLVSCSSKKEAVSGDVVAVVNGEKITNAEYQQIFEQVKEQIESAPTYT 64
Query: 75 VNSERARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
+ G + + +LD+LV+ L Q + + V E + F+ K
Sbjct: 65 KDIWNQDYQGKKFLDFVKENVLDSLVAQKLLVQEAKKKNITVTDKEVEEEYNKEKQFNSK 124
Query: 129 DNK 131
K
Sbjct: 125 VTK 127
>gi|66047852|ref|YP_237693.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
pv. syringae B728a]
gi|63258559|gb|AAY39655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
pv. syringae B728a]
gi|330970840|gb|EGH70906.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
pv. aceris str. M302273PT]
Length = 442
Score = 72.6 bits (175), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 33 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 87
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 88 LQMGERSGIRVSDEELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 143
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 144 IISRVRQRRVA 154
>gi|94264357|ref|ZP_01288149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
proteobacterium MLMS-1]
gi|93455251|gb|EAT05464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [delta
proteobacterium MLMS-1]
Length = 335
Score = 72.2 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/300 (8%), Positives = 74/300 (24%), Gaps = 7/300 (2%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + S + Q+ +++L ++
Sbjct: 38 DRVVAEVNGEIITMSELEREMAGVEQQVLQQA--PAADREQVLAEARQQVLSGMIDRLLA 95
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + +G+ V IA+ DN+ + + + +AR + + Y +
Sbjct: 96 RQQADRLGIRVGEREVDEAIAQILA----DNRITMEELEAEIARHHGSMENYRRDLQTQI 151
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV-LNNRHVPAIADPSNAVLTQWFE 218
++ ++ + V + + + P + +
Sbjct: 152 LQSRLLSLEVRERVVIPERRIKEYYQQHHQEQTSPEEAYHILQIGFNWPPGDDEAREQAR 211
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ + + + + ++ +L + I +E
Sbjct: 212 RQAEEIHRQARQGADFRELARRYSDLPSARNDGDLGVFQKDELAGIMLEHIPELEPGEIS 271
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
E +Q K +L + + + + + L +
Sbjct: 272 TILETAAGYQFFKLLSNQGELRATGSYEELKGKIREKLYQQALEEQFSKWVKELRENAYI 331
>gi|327479275|gb|AEA82585.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas stutzeri DSM
4166]
Length = 435
Score = 72.2 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S ++ I ++ G V L +++L+ L+S
Sbjct: 36 DRVVAIVDNDVIMQSQLDQRIQEVRQTIEKR-GAEVPPNEV----LQQQVLERLISENLQ 90
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + +A + N + + F LAR+G++ + + + +
Sbjct: 91 LQIGERSGVRISDEELNQAMATI----AQRNNMTPEQFREALARDGLSPETAREQIRREM 146
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 147 IISRVRQRRVA 157
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 29/349 (8%), Positives = 94/349 (26%), Gaps = 5/349 (1%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
E L + + + + +A+ + + +++ + + + I
Sbjct: 87 ENLQLQIGERSGVRISDEELNQAMATIAQRNNMTPEQFRE-ALARDGLSPETAREQIRRE 145
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
V + + ++ ++ + E +
Sbjct: 146 MIISRVRQRRVAERIQVSEQEVQNFLASDLGKLQLSEEYHLANILIPVPEAADSATIQAA 205
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
E +A T + + + +
Sbjct: 206 ERMARDTHEQLQKGADFARLAVARSASENALEGGDMGWRKAAQLPPPFDSLVRELAVGEF 265
Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
V P G ++ V++ E + +EV + +E+ + + + E
Sbjct: 266 TEPVRTPPG-FIIVKVLEKRGGETQVRDEVHVRHILIKPSAIRSEDEARLLVKRLRERIL 324
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
G++F ++ +N + ++ + QV + P ++ +
Sbjct: 325 AGEDFAELARNFSEDPGSALNGGDLNWIDPNSLVPEFRQVMANTASGELSQPFQSPYGWH 384
Query: 573 VFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ +V + E+ + + L + L + + ++ + V +
Sbjct: 385 ILEVLGRRATDTSEEFREQQARNLLRNRRYDEELQAWLRQIRDEAYVEI 433
>gi|302185941|ref|ZP_07262614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
pv. syringae 642]
Length = 440
Score = 72.2 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|320332054|gb|EFW87990.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 440
Score = 72.2 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|320326011|gb|EFW82069.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
glycinea str. B076]
gi|330985794|gb|EGH83897.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 440
Score = 72.2 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|327403972|ref|YP_004344810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
DSM 16823]
gi|327319480|gb|AEA43972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
DSM 16823]
Length = 737
Score = 72.2 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 64/535 (11%), Positives = 131/535 (24%), Gaps = 36/535 (6%)
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
I+D ++ + ++ DV +A E + +
Sbjct: 222 EIKDEDVKVSDKEIRDYYEKNKEKPKYQVMAGRDVKFFDIAIEPSKSDIDTFNLEMKKIK 281
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
T + + + + +
Sbjct: 282 TAFAASTNDSLFILQNSELPRMYASGNQLTFRPEGDAKARQGMTYPVAMDTV--FKTATV 339
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
P + + V + + L E + +K S + + N
Sbjct: 340 GQIVGPYDDKGKTRIAKVLGFNSTVLKARHILINAPEGDAKKVASAKKLADSLVKLVNNA 399
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
E E+QG F + + ++ K V
Sbjct: 400 NFAEFVTKYS---------EDQGSKEKGGVYEDFMDYEMVEPFSKFAME---KPIGTIGV 447
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY---------KRLE 392
+ FG+ I V + K V + TKA K K ++
Sbjct: 448 VKTQFGFHIMEVMDRKAGSKFPVLAVVEKTMLPSEDTKADLKDKAYTLLAKLDRELEKKS 507
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ D I+R+ S L + D + K AI +L +
Sbjct: 508 DITDKVILFDTIARKAGYYSRPLRMFDESPKVQGFVTKMAIQTILEL--AYNDEAKVGDM 565
Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
D + + +L +V ++ D K A ++ K +
Sbjct: 566 CSAPIQDDKRLVIAMVSSIREKGVPQLVDVYERMRTDAMNEKRANKILKKIGSV------ 619
Query: 513 EGKNFRDIGKNLGASLLTTN-QINRMDNENKFFGYDGISQVFSGP-VEMVKCFPIENGLS 570
N + K L ++ + + + I +FSG +
Sbjct: 620 --TNLEVLAKKLKTEVMNAEVTFATPSIQGGGYEPEVIGALFSGKIKDKSSSKATVGQSG 677
Query: 571 YVVFKVTN-SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
V +V K V D + + + + L+ + +V + L+
Sbjct: 678 VYVIRVNKSVKAQTVTSYDAEKMQMLSQIKGSIANVSRQALQKKMNVMDNRALLD 732
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 80/667 (11%), Positives = 186/667 (27%), Gaps = 76/667 (11%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+ IR ++ + + F++ GL D + S S ++ + V + + +
Sbjct: 4 IGRIRNMR--YLLVGITGLALLTFILTGLFDKIGSSVESGNYGTIDGEVVDTAIYNSKLI 61
Query: 62 QELG--MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
Q + + K V L+ E +GL +
Sbjct: 62 QFQNTDRQQVEQQQQRQYNDQDAEQSADKAWSATVDEIVLNGEYEALGLTVSEKEFTSFL 121
Query: 120 ARSPLF-----------HGKDNKFSHDVFVSRLAREGI--------NEKEYIDHYTKMLS 160
F +F+ + + N K+ +
Sbjct: 122 FGEDGFSLIPEIQQNFSDPNTGQFNAAQLTKYIEEQEKSTDATAVANWKKTKEAIRNQRM 181
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEK 219
+ G + L E++S+ ++V R S+ + ++EK
Sbjct: 182 QEKYFQFLGQGAYVTKLEAKNEYLAKNESKSISFVVGQFREIKDEDVKVSDKEIRDYYEK 241
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
K+ K DV + IE S ++ + K+ + T + L
Sbjct: 242 NKEK-----PKYQVMAGRDVKFFDIAIEPSKSDIDTFNLEMKKIKTAFAASTNDSLFILQ 296
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
E + S + + + +++ + D++F A G
Sbjct: 297 NSELPRMYASGNQLTFRPE-------------GDAKARQGMTYPVAMDTVFKTATVGQIV 343
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
IA V + + + + +++K+ + +L
Sbjct: 344 GPYDDKGKTRIAKVLGFNSTVLKARHILINAPEGDAKKVASAKKLADSLVKLVNNANFAE 403
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + S D K+ G + Y+ F F + P+ V
Sbjct: 404 FVTKYSE------------DQGSKEKGGVYEDFMDYEMVEPFSKFAMEKPIGTIGVVKTQ 451
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN--- 516
G + +++ + + V+ + T ++ KA L+ + +E +
Sbjct: 452 FG-FHIMEVMDRKAGSKFPVLAVVEK--TMLPSEDTKADLKDKAYTLLAKLDRELEKKSD 508
Query: 517 -------FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG------PVEMVKCF 563
F I + G + F I + V +
Sbjct: 509 ITDKVILFDTIARKAGYYSRPLRMFDESPKVQGFVTKMAIQTILELAYNDEAKVGDMCSA 568
Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
PI++ V+ V++ + V + + +M + + + + + ++
Sbjct: 569 PIQDDKRLVIAMVSSIREKGVP---QLVDVYERMRTDAMNEKRANKILKKIGSVTNLEVL 625
Query: 624 QRYLDGE 630
+ L E
Sbjct: 626 AKKLKTE 632
>gi|237803361|ref|ZP_04590946.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331025342|gb|EGI05398.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 440
Score = 72.2 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V + S + I+++ G V A L K++LD L+
Sbjct: 31 DSVAAIVDNDVIMKSQVDQRVHEVQQTIAKR-GSGVPPAEA----LQKQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + IA + N S + F + L +G++ + + + +
Sbjct: 86 LQMGERSGIRVSDDELNQAIASI----AQRNNMSVEQFRAALIHDGVSYDDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|78046458|ref|YP_362633.1| peptidylprolyl isomerase precursor [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325928237|ref|ZP_08189442.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
91-118]
gi|121956510|sp|Q3BX80|SURA_XANC5 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|78034888|emb|CAJ22533.1| peptidylprolyl isomerase precursor [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325541397|gb|EGD12934.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas perforans
91-118]
Length = 463
Score = 72.2 bits (174), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/186 (11%), Positives = 49/186 (26%), Gaps = 9/186 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + +L + + L+ A S V V S + + +
Sbjct: 2 TKPFSVVLASLLAITSTVSPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAG 61
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ LV + G+ + IA +G
Sbjct: 62 RENQ-LPPDDV----LQRQVLERLVLVKLQVSRADGNGIRVSDEELNRAIASIAQQNGTT 116
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
D +LA +G+ ++ + + F +
Sbjct: 117 V----DGLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAA 172
Query: 190 RSVDYI 195
Y
Sbjct: 173 TGSQYH 178
>gi|84625193|ref|YP_452565.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|121956520|sp|Q2NZI6|SURA_XANOM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|84369133|dbj|BAE70291.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 463
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/186 (11%), Positives = 49/186 (26%), Gaps = 9/186 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + +L + I L+ A S V V S + + +
Sbjct: 2 TKPFSVVLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAG 61
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ L+ + G+ + IA +G
Sbjct: 62 RENQ-LPPDDV----LQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASIAQQNGTT 116
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
D +LA +G+ ++ + + F +
Sbjct: 117 V----DGLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALTQQAA 172
Query: 190 RSVDYI 195
Y
Sbjct: 173 TGSKYH 178
>gi|331011659|gb|EGH91715.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 440
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|289663554|ref|ZP_06485135.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 463
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/186 (11%), Positives = 49/186 (26%), Gaps = 9/186 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + +L + I L+ A S V V S + + +
Sbjct: 2 TKPFSVVLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAG 61
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ L+ + G+ + IA +G
Sbjct: 62 RENQ-LPPDDV----LQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASIAQQNGTT 116
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
D +LA +G+ ++ + + F +
Sbjct: 117 V----DGLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAA 172
Query: 190 RSVDYI 195
Y
Sbjct: 173 TGSQYH 178
>gi|241662025|ref|YP_002980385.1| SurA domain-containing protein [Ralstonia pickettii 12D]
gi|240864052|gb|ACS61713.1| SurA domain protein [Ralstonia pickettii 12D]
Length = 500
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/171 (9%), Positives = 39/171 (22%), Gaps = 9/171 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + +N + + L ++L+ L+
Sbjct: 92 DEVVAVVNTDVITRRELLNRADLVERTFRAQ-NRPLPP----RADLLGEVLEQLILERVQ 146
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q ++ G+ V + + N S S+L G+ +Y D + +
Sbjct: 147 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLKDAGMTYDKYRDDLRQEI 202
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ V + + +
Sbjct: 203 LLARLREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAE 253
>gi|257483108|ref|ZP_05637149.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 442
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 33 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 87
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 88 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 143
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 144 IISRVRQRRVA 154
>gi|166710727|ref|ZP_02241934.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 463
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/186 (11%), Positives = 49/186 (26%), Gaps = 9/186 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + +L + I L+ A S V V S + + +
Sbjct: 2 TKPFSVVLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAG 61
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ L+ + G+ + IA +G
Sbjct: 62 RENQ-LPPDDV----LQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASIAQQNGTT 116
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
D +LA +G+ ++ + + F +
Sbjct: 117 V----DGLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALTQQAA 172
Query: 190 RSVDYI 195
Y
Sbjct: 173 TGSKYH 178
>gi|58583369|ref|YP_202385.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188575375|ref|YP_001912304.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|75508083|sp|Q5GWC1|SURA_XANOR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|58427963|gb|AAW77000.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188519827|gb|ACD57772.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 463
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/186 (11%), Positives = 49/186 (26%), Gaps = 9/186 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + +L + I L+ A S V V S + + +
Sbjct: 2 TKPFSVVLASLLAITSTISPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAG 61
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ L+ + G+ + IA +G
Sbjct: 62 RENQ-LPPDDV----LQRQVLERLILVKLQVGRADGSGIRVSDEELNRAIASIAQQNGTT 116
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
D +LA +G+ ++ + + F +
Sbjct: 117 V----DGLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALTQQAA 172
Query: 190 RSVDYI 195
Y
Sbjct: 173 TGSKYH 178
>gi|187927495|ref|YP_001897982.1| SurA domain [Ralstonia pickettii 12J]
gi|309779803|ref|ZP_07674558.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Ralstonia sp. 5_7_47FAA]
gi|187724385|gb|ACD25550.1| SurA domain [Ralstonia pickettii 12J]
gi|308921380|gb|EFP67022.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Ralstonia sp. 5_7_47FAA]
Length = 500
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/171 (9%), Positives = 39/171 (22%), Gaps = 9/171 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + +N + + L ++L+ L+
Sbjct: 92 DEVVAVVNTDVITRRELLNRADLVERTFRAQ-NRPLPP----RADLLGEVLEQLILERVQ 146
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q ++ G+ V + + N S S+L G+ +Y D + +
Sbjct: 147 AQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLKDAGMTYDKYRDDLRQEI 202
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ V + + +
Sbjct: 203 LLARLREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQQYNVAQILVPVAE 253
>gi|317402408|gb|EFV82980.1| chaperone surA [Achromobacter xylosoxidans C54]
Length = 517
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 42/494 (8%), Positives = 111/494 (22%), Gaps = 69/494 (13%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + ++ ++ G + + G V + L ++L L+
Sbjct: 53 DGIAAVVDKDVITLRELRDASQRIAGELKAR-GIQVPDD----KTLQHQVLQRLIMERVQ 107
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ +G+ D +V IA NK + + + G+N Y +
Sbjct: 108 RHEADRLGIRVDDAQVDQAIATI----AGRNKITVAQLRQEIEKSGVNWDSYRKSLKDEI 163
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ V S+A + + +
Sbjct: 164 RSDRLRQRAVDSNIV---------------------------------ISDAEVDAFLKD 190
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ N + + ++ + + + +
Sbjct: 191 QRRNPAFAAAPQQAQPQPQPEAAPEQAAAPAGPMLYAVAQILVRVPEGSSPEQLAALRKK 250
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
++ + + + ++L +G + PD L + +KG +
Sbjct: 251 AEDLLARVKRGDDFASLAAASSDGPEALQGGVMGVRPLDGWPD--LFAKAIANLQKGQIS 308
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKK----------------------DIANQMRI 377
++ G+ I V + + + + ++
Sbjct: 309 GLLQSGNGFHILKVMDRGTAQPAPSRTARAPVPTPAPQPRPQPQAQAPQGPVEVMQTHAR 368
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP-YK 436
+ ++ K + A G P
Sbjct: 369 HILIKTSTVMSDEQARQRLEQVRQRLVAGDAKFDDMARQYSQDATAPQGGDLGWLNPGET 428
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
P + P G ++ E D + ++ +
Sbjct: 429 VPPFEAAMNALKPGEISQPIQTPFGWHLIQ--VEERRQHDATDDLARMKARQTLFERRAQ 486
Query: 497 EEVSSKANQLVLEY 510
+QL +
Sbjct: 487 PAFEDWLDQLRAQA 500
>gi|319940878|ref|ZP_08015217.1| hypothetical protein HMPREF9464_00436 [Sutterella wadsworthensis
3_1_45B]
gi|319805760|gb|EFW02541.1| hypothetical protein HMPREF9464_00436 [Sutterella wadsworthensis
3_1_45B]
Length = 460
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 43/143 (30%), Gaps = 9/143 (6%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
G S V V + + ++ N + L
Sbjct: 36 AGEQAPAASGELDRIVAVVNNDIITEHELEQRVHTVAINLRRQ-----NIQLPAMELLRA 90
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++L+ L+S + Q G+ D V + + + N S + RLA +G+N
Sbjct: 91 QVLERLISERAILQRARQTGIRVDDQMVNASVEQI----ARQNNLSIEELRQRLAADGVN 146
Query: 148 EKEYIDHYTKMLSRTDVVGMFVG 170
+ + ++ + V
Sbjct: 147 FASFRNEIRDEITTQRLREREVN 169
>gi|299067923|emb|CBJ39137.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
maturation of outer membrane proteins [Ralstonia
solanacearum CMR15]
Length = 496
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/181 (11%), Positives = 47/181 (25%), Gaps = 9/181 (4%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S A S V V + ++ + + N + L ++L
Sbjct: 79 SSAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQSQ-----NRQIPARPDLLGEVL 133
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ L+ Q ++ G+ V + + N S S+LA+ G+ +
Sbjct: 134 EQLILERVQAQTAKESGIRVSDADVDRAVESV----AQRNNLSVSQLKSKLAQSGLAYDK 189
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
Y + + + + V + L + +
Sbjct: 190 YREDLRQEILLARLRDREVDSKVQVFDGEIDNFLAQQGGSAASGGALEYNVAQILVPVAE 249
Query: 211 A 211
Sbjct: 250 D 250
>gi|289627686|ref|ZP_06460640.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289649005|ref|ZP_06480348.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330868493|gb|EGH03202.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 440
Score = 72.2 bits (174), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|294625755|ref|ZP_06704374.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664833|ref|ZP_06730154.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599925|gb|EFF44043.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605389|gb|EFF48719.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 463
Score = 71.8 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/186 (11%), Positives = 49/186 (26%), Gaps = 9/186 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + +L + + L+ A S V V S + + +
Sbjct: 2 TKPFSVVLASLLAITSTVSPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAG 61
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ LV + G+ + IA +G
Sbjct: 62 RENQ-LPPDDV----LQRQVLERLVLVKLQVSRADGNGIRVSDEELNRAIASIAQQNGTT 116
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
D +LA +G+ ++ + + F +
Sbjct: 117 V----DGLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAA 172
Query: 190 RSVDYI 195
Y
Sbjct: 173 TGSQYH 178
>gi|253998290|ref|YP_003050353.1| SurA domain-containing protein [Methylovorus sp. SIP3-4]
gi|253984969|gb|ACT49826.1| SurA domain protein [Methylovorus sp. SIP3-4]
Length = 438
Score = 71.8 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 57/495 (11%), Positives = 140/495 (28%), Gaps = 77/495 (15%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+A +FL + + + + V V + V + + + ++
Sbjct: 7 LMAGVFLWLGALIPHVASAAQDGSVNKIDRIVAVVDQGVVTEKELNDRIEIVSAQLEKQ- 65
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
G + L+K+IL+ L++ Q+ GL D ++ I R + NK
Sbjct: 66 GNQLPP----RNVLEKQILERLINDRLQLQYAAQTGLRVDDDQLDKTIMRI----AEQNK 117
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
F LA EGI K++ + + + V
Sbjct: 118 MGVPEFKEALAAEGIVYKKFREDIRNEILLARLREREVDNR------------------- 158
Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
+ + + + + + S +
Sbjct: 159 --------------VNVTESEVDNFLTTQSSR-----QDSSDEYEISHILIRAPEDGSPE 199
Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
+L+ EK ++A + Q+ + + + +L
Sbjct: 200 DLKRLREK--------------------AEDALKKLQAGEDFGQVSARVSDAPNALEGGK 239
Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
LG + +P +L + G + ++ G+ I +++ + T + +
Sbjct: 240 LGWKTAAQVP--ALFLEALKPMQVGQLSGILRSPNGFHILKLTDRRGGNTSTMVQQTHTR 297
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
++ ++ E ++++ L + ++ K S D + +
Sbjct: 298 HILIKTSEV-LSETEAKRKIDGIKQLIDNGEDFGEAAKRYSN-----DGSAANGGDLGWV 351
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
+ P V P G ++ ++ R+ E + +++ +
Sbjct: 352 NPGDTVPQFEKAMNALQPGQISDAVRSPFGWHLIQVLERRNQDMTREAERMKA--RQEIR 409
Query: 492 TVKTAEEVSSKANQL 506
K E +L
Sbjct: 410 QRKADEAYQDWVREL 424
>gi|21241635|ref|NP_641217.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
citri str. 306]
gi|81804731|sp|Q8PP23|SURA_XANAC RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|21106996|gb|AAM35753.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv.
citri str. 306]
Length = 463
Score = 71.8 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/186 (11%), Positives = 49/186 (26%), Gaps = 9/186 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + +L + + L+ A S V V S + + +
Sbjct: 2 TKPFSVVLASLLAITSTVSPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAG 61
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ LV + G+ + IA +G
Sbjct: 62 RENQ-LPPDDV----LQRQVLERLVLVKLQVSRADGNGIRVSDEELNRAIASIAQQNGTT 116
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
D +LA +G+ ++ + + F +
Sbjct: 117 V----DGLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAA 172
Query: 190 RSVDYI 195
Y
Sbjct: 173 TGSQYH 178
>gi|330891199|gb|EGH23860.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
mori str. 301020]
Length = 440
Score = 71.8 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|218885391|ref|YP_002434712.1| SurA domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218756345|gb|ACL07244.1| SurA domain protein [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 320
Score = 71.8 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/209 (15%), Positives = 73/209 (34%), Gaps = 6/209 (2%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R RT+ ++++ + L A + + V + + F EL
Sbjct: 1 MRSLLRTFRLAAPVLLVSLACLATVAVVAPRAEQINKIAAVVNGEMITFFDVQAQATPEL 60
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ + E R V L ++LD+L+S ++Q E + G V E+ +
Sbjct: 61 MRLGLDRNNPAHQEAVRKVHL--QVLDSLISDILMNQEAERWKITVQDGEVENELRK--- 115
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
+ ++ S F +L ++G++ D K + R ++ + + +
Sbjct: 116 -FVQRSQLSQQEFERQLTQQGLSMDVMRDRVRKGILRHRLLTLMIARKIVITQEDVKKYY 174
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVL 213
+++ V + V + L
Sbjct: 175 DAHKSQFVTDRTVRLGLVIFAPTANAEAL 203
>gi|77917707|ref|YP_355522.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus
DSM 2380]
gi|77543790|gb|ABA87352.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus
DSM 2380]
Length = 316
Score = 71.8 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 61/195 (31%), Gaps = 11/195 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K ++ + + L L + + S V + + + + L +Q+ G
Sbjct: 1 MKYLILSIALLMLAT---SPLSAETISRIAAIVNQDIITTAQLDREIDKMLSAEAQETGI 57
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ L K+LD L+ L+Q IE +GL V I N +
Sbjct: 58 TP----VQREELRHKMLDKLIEDTLLNQRIEKLGLHVSDEAVEQAINDVQA----QNNIT 109
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ L +GIN +Y + + L ++G + + + +
Sbjct: 110 REQLKQALVAQGINFDDYRERLRQQLLNFQLIGREIQSKVEVTNTEMRDYYRSHLDDYRN 169
Query: 194 YIVLNNRHVPAIADP 208
L + P
Sbjct: 170 DPYLRLSRITFRLPP 184
Score = 41.4 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 23/185 (12%), Positives = 53/185 (28%), Gaps = 8/185 (4%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+QLL + SK Y + + +L + + A
Sbjct: 133 QQLLNFQLIGREIQSKVEVTNTEMRDYYRSHLDDYRNDPYLRLSRITFRLPPGNTPADIA 192
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
+ A+ L + + GK+F ++ A+ + +
Sbjct: 193 AMRAKAADAL--QQLRRGKDFLEVLMQNAATSGVDGG-DMGKITEGSLSESFNRAISGLS 249
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKS 612
V V IE + + ++ G Q + +++ + +D L L+
Sbjct: 250 VGQVSEI-IETPEGFHLLRLDERNPGDTQTFETVKEQISRKLMEDKRAAALTEWTENLRK 308
Query: 613 QYSVT 617
+ +
Sbjct: 309 EADIE 313
>gi|297545519|ref|YP_003677821.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296843294|gb|ADH61810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 301
Score = 71.8 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 40/125 (32%), Gaps = 7/125 (5%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+ L + F + + + V +V + + + + ++ Q I + +
Sbjct: 5 IALILSFGFI-VFLLVSCSAKKEVVATVNGENITNAEYRKAFDQVKAQIESSPQYTKDIW 63
Query: 79 RARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
G + + +LD+L++ L Q + + E R F+ K
Sbjct: 64 NQDYEGKKFLDVVKENVLDSLIAQKLLLQEALKNNITVSDKEIEEEYQREKEFNKDITKE 123
Query: 133 SHDVF 137
+
Sbjct: 124 DVKNY 128
Score = 45.6 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 29/254 (11%), Positives = 73/254 (28%), Gaps = 11/254 (4%)
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
+ + +++ + ++ + K L + ++
Sbjct: 40 EYRKAFDQVKAQIESSPQYTKDIWNQDYEGKKFLDVVKENV--LDSLIAQKLLLQEALKN 97
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
I ++ + + ++ +KD T + ++ E + EE L +D K
Sbjct: 98 NITVSDKEIEEEYQREKEFNKDITKEDVKNYLLINKLFEEYTKDVKITEEELKKYYEDNK 157
Query: 492 TVKTAEEVS------SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN-KFF 544
+ S K Q + +G++F + K T +Q +
Sbjct: 158 DQFETVKASHILVSDEKIAQDIYNRLMKGEDFATLAKEYSIDTATKDQGGDLGEFARGVM 217
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-KFISYLTQMMNKDLL 603
+ FS + P++ Y + K + + E +YL ++
Sbjct: 218 VPEFEQVAFSLKKGQI-SKPVKTDYGYHIIKSEGATLKSFDEVKGDIEAYLLNDKKNQVI 276
Query: 604 DSVIAYLKSQYSVT 617
L+ +
Sbjct: 277 TEKYDALEKAAKIQ 290
>gi|121956451|sp|Q8Y220|SURA_RALSO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
Length = 496
Score = 71.8 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/181 (11%), Positives = 46/181 (25%), Gaps = 9/181 (4%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S A S V V + ++ + + V L ++L
Sbjct: 79 SGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQSQNRQVPVRAD-----LLGEVL 133
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ L+ Q ++ G+ V + + N S S+LA+ G+ +
Sbjct: 134 EQLILERVQAQTAKESGIRVSDADVDRAVESV----AQRNNLSVSQLKSKLAQSGLAYDK 189
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
Y + + + + V + V + +
Sbjct: 190 YREDLRQEILLARLRDREVDSKVQVFDGEIDNFLAQQGGSAASSGVQEYNVAQILVPVAE 249
Query: 211 A 211
Sbjct: 250 D 250
>gi|319778501|ref|YP_004129414.1| Survival protein SurA precursor [Taylorella equigenitalis MCE9]
gi|317108525|gb|ADU91271.1| Survival protein SurA precursor [Taylorella equigenitalis MCE9]
Length = 491
Score = 71.8 bits (173), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/510 (8%), Positives = 119/510 (23%), Gaps = 45/510 (8%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSD-----------ALFSVSGSSTVVSVGRQKVPFSSFINS 59
++ KI + L + + L + + V + + F +
Sbjct: 2 SFTKKIITLSLALSSVFAIAQSDTKQVKNQVKHTLSKNATEQILAVVNDEVITMGDFASR 61
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ G + E +L +L+ +D F ++ GL RV I
Sbjct: 62 LNTL-----RISGQHFSDE---------AVLQSLIDEKLMDTFAKERGLTVSDQRVAQAI 107
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
N + + + ++ IN EY+ + + + D+ +
Sbjct: 108 QNIAA----QNGLTPEQMKAASSQYNINWDEYLKNIRQQILIEDLKAAIIRDRINITPHD 163
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+A + P +Y I
Sbjct: 164 IEAYLAQNPTGLPKGYKEPVKVEPRFEK---------------RQVVEQYFVPKAISLQH 208
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
S + + A K E V + EA G + +
Sbjct: 209 IYIRVPEGSSPETVAAAKAKANEALSKIRKGQKFADVARQYSDGPEAANGGNLGIRMNED 268
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + + + + + ++G + +
Sbjct: 269 WPALFMNATKNVRDGRTSGVFQAANGFHILRVVERRGLVDQRVKTVNVRLPDPPQPQLSE 328
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + + + + + + + +++ + + D
Sbjct: 329 KEKAAIKEGPVEVEESHVRHILVAINPVVDEQKAYEKIVDIANQLKSGAEFSDLAEKYSD 388
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+ G + F PL++ + +++ E +
Sbjct: 389 DTSAPLGGDLSWIVRGSADPAFDQAAFSLPLNQVSEPIRTKFGWHIMEVLERRSLDRKSD 448
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
+ ++ + NQL +
Sbjct: 449 IR-KDVAYEMLYQQQSENILEDWINQLRTQ 477
Score = 42.2 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 45/135 (33%), Gaps = 9/135 (6%)
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
+ K E++ ANQL K G F D+ + +
Sbjct: 353 INPVVDEQKAYEKIVDIANQL-----KSGAEFSDLAEKYSDDTSAPLGGDLSWIVRGSAD 407
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDL 602
FS P+ V PI + + +V + + KD L Q ++++
Sbjct: 408 PAFDQAAFSLPLNQV-SEPIRTKFGWHIMEVLERRSLDRKSDIRKDVAYEMLYQQQSENI 466
Query: 603 LDSVIAYLKSQYSVT 617
L+ I L++Q +
Sbjct: 467 LEDWINQLRTQSYIE 481
>gi|17545235|ref|NP_518637.1| peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum
GMI1000]
gi|17427526|emb|CAD14044.1| probable peptidyl-prolyl cis-trans isomerase (rotamase c) protein
[Ralstonia solanacearum GMI1000]
Length = 498
Score = 71.8 bits (173), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/181 (11%), Positives = 46/181 (25%), Gaps = 9/181 (4%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S A S V V + ++ + + V L ++L
Sbjct: 81 SGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQSQNRQVPVRAD-----LLGEVL 135
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ L+ Q ++ G+ V + + N S S+LA+ G+ +
Sbjct: 136 EQLILERVQAQTAKESGIRVSDADVDRAVESV----AQRNNLSVSQLKSKLAQSGLAYDK 191
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
Y + + + + V + V + +
Sbjct: 192 YREDLRQEILLARLRDREVDSKVQVFDGEIDNFLAQQGGSAASSGVQEYNVAQILVPVAE 251
Query: 211 A 211
Sbjct: 252 D 252
>gi|83749338|ref|ZP_00946335.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
gi|83724016|gb|EAP71197.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia solanacearum UW551]
Length = 495
Score = 71.8 bits (173), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 9/141 (6%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S A S V V + ++ + + + L ++L
Sbjct: 79 SGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQAQNRPMPARAD-----LLGEVL 133
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ L+ Q ++ G+ V + + N S S+LA+ G+ +
Sbjct: 134 EQLILERVQAQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLAQSGLAYDK 189
Query: 151 YIDHYTKMLSRTDVVGMFVGG 171
Y + + + + V
Sbjct: 190 YREDLRQEILLARLRDREVDS 210
>gi|118443543|ref|YP_877117.1| peptidylprolyl isomerase [Clostridium novyi NT]
gi|118133999|gb|ABK61043.1| parvulin-like peptidyl-prolyl isomerase [Clostridium novyi NT]
Length = 348
Score = 71.8 bits (173), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/206 (12%), Positives = 61/206 (29%), Gaps = 6/206 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN--SWKQEL 64
K R VA + + V + + + + + V VG +K+ + + K+
Sbjct: 2 KNIRKLVATVAVCVFSMSAVGCSMIEKTPEAINKTVVAKVGDKKITKGELDSNFAVKRYE 61
Query: 65 GMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEI-A 120
+ G L + + + + L Q E +GL + E
Sbjct: 62 EQFKAQYGDKYAENPQVKEQLKQVKVATVQQMAAQEALKQEAEKLGLVPKEAELKKETDK 121
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ + N S++ F L G ++ + + + ++ +
Sbjct: 122 KIQEMKKEQNIKSNEEFEKMLKASGFTKEGFESLVRDNIILEKLQNELTKNVKVDEKEMQ 181
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIA 206
+ + + D H+ I
Sbjct: 182 KYYETHKDKYPKDVKNPTKVHLAHII 207
Score = 44.5 bits (102), Expect = 0.050, Method: Composition-based stats.
Identities = 33/289 (11%), Positives = 79/289 (27%), Gaps = 10/289 (3%)
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
F P ++VK QM +A ++ E + + L D
Sbjct: 61 EEQFKAQYGDKYAENPQVKEQLKQVKVATVQQMAAQEALKQEAEKLGLVPKEAELKKETD 120
Query: 403 EISRREKIV--SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + K + K + + +++
Sbjct: 121 KKIQEMKKEQNIKSNEEFEKMLKASGFTKEGFESLVRDNIILEKLQNELTKNVKVDEKEM 180
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
Y + + L + K+ + + S+ + E +K G F +
Sbjct: 181 QKYYETHKDKYPKDVKNPTKVHLAHIILQPKSQEDLAKCESEIKSIKEELNK-GAEFSVL 239
Query: 521 GKNL--GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
K S + + + F + + P++ Y + K+
Sbjct: 240 AKKYSQDGSKEKGGDLGTVPTVDSGFDEQFMEAALPLKDGQI-SEPVKTQFGYHIIKMIK 298
Query: 579 SKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+V P + K++ +L + ++ ++ V V ++ I
Sbjct: 299 KEVKPCKTFAEVKNEINKFLLEEKKGKIIKDKFKQIQDNAKVKVFEDKI 347
>gi|71909270|ref|YP_286857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
aromatica RCB]
gi|122070644|sp|Q479U4|SURA_DECAR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|71848891|gb|AAZ48387.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
aromatica RCB]
Length = 438
Score = 71.4 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 60/178 (33%), Gaps = 10/178 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V VG + + L + ++ G + + L++++L+ L+
Sbjct: 36 ADRIVAVVGSDVITYFELRTRLTAALKQLQKQ-GTPLPPQDV----LERQMLERLIMERA 90
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q+ + G++ D ++ I R NK + F + L ++G+ ++ +
Sbjct: 91 QLQYGRETGMKIDDTQLDLAIGRIAA----GNKMTVPQFRAALEKDGVQYAQFREEIRNE 146
Query: 159 LSRTDVVGMFVGGMRP-SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ + V S +D S + L + + A + L +
Sbjct: 147 MVTVRLREREVDSKLVISEGEIDNYLANQTATGSEEEYQLAHILLRAPESATPEQLQK 204
>gi|121956444|sp|Q4ZMG7|SURA_PSEU2 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
Length = 428
Score = 71.4 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 19 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 73
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 74 LQMGERSGIRVSDEELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 129
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 130 IISRVRQRRVA 140
>gi|99034260|ref|ZP_01314318.1| hypothetical protein Wendoof_01000886 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 212
Score = 71.4 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/226 (15%), Positives = 83/226 (36%), Gaps = 16/226 (7%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
EI + + VD +GKD G V +F +
Sbjct: 1 EILSEYNLPIQTIGPVDASGKDQSGNNVGDSGDLISFIFSREKDQKG-----YFKGVGDA 55
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ V+I + P + + EE + W++ E + ++ ++ ++ D+ +
Sbjct: 56 VVSVKIVDIFPPKLQSFEEGKALAVELWRSEFIKERMFKFGQEVAVQLREK----TDLEE 111
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SK 580
G L+ Q++R + + + + + ++F+ PI+ ++ + S
Sbjct: 112 IQGVELVKGQQMHRNKVDQQNYPFSFVEEIFNMKTTGSVTDPIQYNNEIIIGVLKEMHSS 171
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
G + D + L + +I+YL+S+Y V V+ ++
Sbjct: 172 NGKLNTLDTGKRVMIS-----LKEQLISYLESKYKVEVNHAILDDI 212
>gi|53725016|ref|YP_102044.1| survival protein SurA [Burkholderia mallei ATCC 23344]
gi|67641452|ref|ZP_00440230.1| chaperone SurA [Burkholderia mallei GB8 horse 4]
gi|121598370|ref|YP_994032.1| putative survival protein SurA [Burkholderia mallei SAVP1]
gi|124385555|ref|YP_001028304.1| putative survival protein SurA [Burkholderia mallei NCTC 10229]
gi|126449043|ref|YP_001081948.1| putative survival protein SurA [Burkholderia mallei NCTC 10247]
gi|254176840|ref|ZP_04883497.1| putative survival protein SurA [Burkholderia mallei ATCC 10399]
gi|254203730|ref|ZP_04910090.1| putative survival protein SurA [Burkholderia mallei FMH]
gi|254208705|ref|ZP_04915053.1| putative survival protein SurA [Burkholderia mallei JHU]
gi|81685183|sp|Q62MM4|SURA_BURMA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|52428439|gb|AAU49032.1| survival protein SurA, putative [Burkholderia mallei ATCC 23344]
gi|121227180|gb|ABM49698.1| putative survival protein SurA [Burkholderia mallei SAVP1]
gi|124293575|gb|ABN02844.1| putative survival protein SurA [Burkholderia mallei NCTC 10229]
gi|126241913|gb|ABO05006.1| putative survival protein SurA [Burkholderia mallei NCTC 10247]
gi|147745242|gb|EDK52322.1| putative survival protein SurA [Burkholderia mallei FMH]
gi|147750581|gb|EDK57650.1| putative survival protein SurA [Burkholderia mallei JHU]
gi|160697881|gb|EDP87851.1| putative survival protein SurA [Burkholderia mallei ATCC 10399]
gi|238522391|gb|EEP85835.1| chaperone SurA [Burkholderia mallei GB8 horse 4]
Length = 448
Score = 71.4 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 49/174 (28%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 38 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERI 92
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + + +R+ +G+ ++
Sbjct: 93 QVQRAKDDGIVVDNATVQATLGRLA--QANGMQLDQ--YKARIEAQGVPWDLFVRDARTE 148
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V + + + + P+NA
Sbjct: 149 LMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAP 202
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 36/376 (9%), Positives = 103/376 (27%), Gaps = 9/376 (2%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ K+ + +LA+ G L +
Sbjct: 74 PPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQANGMQLDQYKARIEA 133
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ D+ + D+ L + A V++ S ++D+ +
Sbjct: 134 QGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHI 193
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
KA + + + A G ++ + + G P
Sbjct: 194 FVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPAS 253
Query: 437 --EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ V + +PDG + ++ +++ +
Sbjct: 254 LPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRV 313
Query: 495 TAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ S+A Q +++ + G +F + + +Q + + +
Sbjct: 314 GEGKSESQARQQLIDIRRQIESGGDFEKFARTYSQD-GSASQGGDLGWISPGEPVPEFER 372
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIA 608
+ + P+ Y + +V + + + + Q + +
Sbjct: 373 AMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLR 432
Query: 609 YLKSQYSVTVHDNLIQ 624
L+ V + + Q
Sbjct: 433 ELRDSSYVQIKLPVAQ 448
>gi|270157914|ref|ZP_06186571.1| chaperone SurA [Legionella longbeachae D-4968]
gi|289163812|ref|YP_003453950.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella longbeachae
NSW150]
gi|269989939|gb|EEZ96193.1| chaperone SurA [Legionella longbeachae D-4968]
gi|288856985|emb|CBJ10799.1| putative peptidyl-prolyl cis-trans isomerase SurA [Legionella
longbeachae NSW150]
Length = 431
Score = 71.4 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 10/166 (6%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+ ++ + F + + A V V + S + I +
Sbjct: 5 IALICIFFSVV-MGIAQAKQMLDKVVAVVNDGVITESELNKQVELSKKQILAQK-----M 58
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+ L K++L +L+ Q + GL D + I + N +
Sbjct: 59 QLPEESVLRKQVLQHLIDVDLQLQMAKKNGLTVDDTELNQAIEKIAS----ANHVTLTQL 114
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ R+G++ EY ++ K + + + VG +
Sbjct: 115 REEIVRQGMSWDEYRENIRKEMLLSHLQQKAVGRDAMVTSEQVEQY 160
>gi|254447632|ref|ZP_05061098.1| chaperone SurA [gamma proteobacterium HTCC5015]
gi|198262975|gb|EDY87254.1| chaperone SurA [gamma proteobacterium HTCC5015]
Length = 442
Score = 71.4 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/234 (11%), Positives = 67/234 (28%), Gaps = 9/234 (3%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+L + FL + V + ++ + I G +
Sbjct: 8 LLILFFLFATPLAQAEPQVLARIAAVVDTDIILEQEMLDELSRVKARIQA-SGQTPPPDE 66
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L +++L++L+ Q + +G+ D + ++ R +N S F +
Sbjct: 67 I----LKRQVLEHLIVKEVQMQAADRVGINVDDTFLNEQLQRIAS----ENGMSLAQFKA 118
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
++ EG++ EY + + + + V + S
Sbjct: 119 KIESEGMDYVEYREMLREEMKIQQLRQRTVYDRVVVSEQEVDDYLAQNPVGSESVEYQLG 178
Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + K DN + + + + + + +L
Sbjct: 179 HILVGTPEAATPEQVDTARKEADNLYEQIKQGARFSQLALSHSDGQRALDGGDL 232
>gi|311233707|gb|ADP86561.1| SurA domain protein [Desulfovibrio vulgaris RCH1]
Length = 369
Score = 71.4 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 51/135 (37%), Gaps = 6/135 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + + + E+ ++E R + + +LD+++S +
Sbjct: 85 NRIAAVVNGEMITYFDVQAQAAPEILRAGLDPVRDADAEPVRR--ITRNVLDSMISDILI 142
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + V E + + ++ + + F +LA++G++ + + +
Sbjct: 143 SQEAERLKITVQDSEVDNEYRKI----VQRSQLAPEQFERQLAQQGLSADLMRERIRRGI 198
Query: 160 SRTDVVGMFVGGMRP 174
R ++G+ +
Sbjct: 199 LRHRLLGLMIARKVV 213
Score = 41.4 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 5/123 (4%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
A+ L + F D+ N D + +
Sbjct: 246 RDDADALAAQVKSGAMTFADLAARHSIGPNPQNGGVIGDLLWSDLSMEWRDTLSELKPGD 305
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN----KDLLDSVIAYLKSQYS 615
V + G V ++ S G Q D + ++ ++ L I L+S+
Sbjct: 306 VSRVFLVEGRK-AVLQLVASNEGKGQALDDVAEEIENILREPKMQERLQEYIGQLRSRAV 364
Query: 616 VTV 618
+ +
Sbjct: 365 IDI 367
>gi|76810003|ref|YP_332285.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei 1710b]
gi|167718164|ref|ZP_02401400.1| putative survival protein SurA [Burkholderia pseudomallei DM98]
gi|167737195|ref|ZP_02409969.1| putative survival protein SurA [Burkholderia pseudomallei 14]
gi|167822803|ref|ZP_02454274.1| putative survival protein SurA [Burkholderia pseudomallei 9]
gi|167844378|ref|ZP_02469886.1| putative survival protein SurA [Burkholderia pseudomallei B7210]
gi|167901377|ref|ZP_02488582.1| putative survival protein SurA [Burkholderia pseudomallei NCTC
13177]
gi|167909606|ref|ZP_02496697.1| putative survival protein SurA [Burkholderia pseudomallei 112]
gi|167917621|ref|ZP_02504712.1| putative survival protein SurA [Burkholderia pseudomallei BCC215]
gi|226196777|ref|ZP_03792357.1| putative chaperone surA [Burkholderia pseudomallei Pakistan 9]
gi|242314929|ref|ZP_04813945.1| putative chaperone surA [Burkholderia pseudomallei 1106b]
gi|254181756|ref|ZP_04888353.1| putative survival protein SurA [Burkholderia pseudomallei 1655]
gi|254196558|ref|ZP_04902982.1| putative survival protein SurA [Burkholderia pseudomallei S13]
gi|254296203|ref|ZP_04963660.1| putative survival protein SurA [Burkholderia pseudomallei 406e]
gi|122070636|sp|Q3JVW8|SURA_BURP1 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|76579456|gb|ABA48931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei 1710b]
gi|157805631|gb|EDO82801.1| putative survival protein SurA [Burkholderia pseudomallei 406e]
gi|169653301|gb|EDS85994.1| putative survival protein SurA [Burkholderia pseudomallei S13]
gi|184212294|gb|EDU09337.1| putative survival protein SurA [Burkholderia pseudomallei 1655]
gi|225931308|gb|EEH27315.1| putative chaperone surA [Burkholderia pseudomallei Pakistan 9]
gi|242138168|gb|EES24570.1| putative chaperone surA [Burkholderia pseudomallei 1106b]
Length = 448
Score = 71.4 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 49/174 (28%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 38 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERI 92
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + + +R+ +G+ ++
Sbjct: 93 QVQRAKDDGIVVDNATVQATLGRLA--QANGMQLDQ--YKARIEAQGVPWDLFVRDARTE 148
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V + + + + P+NA
Sbjct: 149 LMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAP 202
Score = 46.8 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 36/376 (9%), Positives = 103/376 (27%), Gaps = 9/376 (2%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ K+ + +LA+ G L +
Sbjct: 74 PPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQANGMQLDQYKARIEA 133
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ D+ + D+ L + A V++ S ++D+ +
Sbjct: 134 QGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHI 193
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
KA + + + A G ++ + + G P
Sbjct: 194 FVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPAS 253
Query: 437 --EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ V + +PDG + ++ +++ +
Sbjct: 254 LPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRV 313
Query: 495 TAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ S+A Q +++ + G +F + + +Q + + +
Sbjct: 314 GEGKSESQARQQLIDIRRQIESGGDFEKFARTYSQD-GSASQGGDLGWISPGETVPEFER 372
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIA 608
+ + P+ Y + +V + + + + Q + +
Sbjct: 373 AMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLR 432
Query: 609 YLKSQYSVTVHDNLIQ 624
L+ V + + Q
Sbjct: 433 ELRDSSYVQIKLPVAQ 448
>gi|330881719|gb|EGH15868.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas syringae
pv. glycinea str. race 4]
Length = 256
Score = 71.4 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 33 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 87
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 88 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 143
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 144 IISRVRQRRVA 154
>gi|46580310|ref|YP_011118.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Desulfovibrio vulgaris str. Hildenborough]
gi|46449727|gb|AAS96377.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
vulgaris str. Hildenborough]
Length = 348
Score = 71.4 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 51/135 (37%), Gaps = 6/135 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + + + E+ ++E R + + +LD+++S +
Sbjct: 64 NRIAAVVNGEMITYFDVQAQAAPEILRAGLDPVRDADAEPVRR--ITRNVLDSMISDILI 121
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + V E + + ++ + + F +LA++G++ + + +
Sbjct: 122 SQEAERLKITVQDSEVDNEYRKI----VQRSQLAPEQFERQLAQQGLSADLMRERIRRGI 177
Query: 160 SRTDVVGMFVGGMRP 174
R ++G+ +
Sbjct: 178 LRHRLLGLMIARKVV 192
Score = 41.4 bits (94), Expect = 0.46, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 5/123 (4%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
A+ L + F D+ N D + +
Sbjct: 225 RDDADALAAQVKSGAMTFADLAARHSIGPNPQNGGVIGDLLWSDLSMEWRDTLSELKPGD 284
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN----KDLLDSVIAYLKSQYS 615
V + G V ++ S G Q D + ++ ++ L I L+S+
Sbjct: 285 VSRVFLVEGRK-AVLQLVASNEGKGQALDDVAEEIENILREPKMQERLQEYIGQLRSRAV 343
Query: 616 VTV 618
+ +
Sbjct: 344 IDI 346
>gi|298485302|ref|ZP_07003394.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans
isomerase surA) [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|298160152|gb|EFI01181.1| Survival protein surA precursor (Peptidyl-prolyl cis-trans
isomerase surA) [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
Length = 428
Score = 71.4 bits (172), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 19 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 73
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 74 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 129
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 130 IISRVRQRRVA 140
>gi|251767814|ref|ZP_02268497.2| putative survival protein SurA [Burkholderia mallei PRL-20]
gi|254360242|ref|ZP_04976512.1| putative survival protein SurA [Burkholderia mallei 2002721280]
gi|148029482|gb|EDK87387.1| putative survival protein SurA [Burkholderia mallei 2002721280]
gi|243061646|gb|EES43832.1| putative survival protein SurA [Burkholderia mallei PRL-20]
Length = 450
Score = 71.4 bits (172), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 49/174 (28%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 40 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERI 94
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + + +R+ +G+ ++
Sbjct: 95 QVQRAKDDGIVVDNATVQATLGRLA--QANGMQLDQ--YKARIEAQGVPWDLFVRDARTE 150
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V + + + + P+NA
Sbjct: 151 LMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAP 204
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 36/376 (9%), Positives = 103/376 (27%), Gaps = 9/376 (2%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ K+ + +LA+ G L +
Sbjct: 76 PPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQANGMQLDQYKARIEA 135
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ D+ + D+ L + A V++ S ++D+ +
Sbjct: 136 QGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHI 195
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
KA + + + A G ++ + + G P
Sbjct: 196 FVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPAS 255
Query: 437 --EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ V + +PDG + ++ +++ +
Sbjct: 256 LPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRV 315
Query: 495 TAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ S+A Q +++ + G +F + + +Q + + +
Sbjct: 316 GEGKSESQARQQLIDIRRQIESGGDFEKFARTYSQD-GSASQGGDLGWISPGEPVPEFER 374
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIA 608
+ + P+ Y + +V + + + + Q + +
Sbjct: 375 AMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLR 434
Query: 609 YLKSQYSVTVHDNLIQ 624
L+ V + + Q
Sbjct: 435 ELRDSSYVQIKLPVAQ 450
>gi|167892891|ref|ZP_02480293.1| putative survival protein SurA [Burkholderia pseudomallei 7894]
gi|254187685|ref|ZP_04894197.1| putative survival protein SurA [Burkholderia pseudomallei Pasteur
52237]
gi|157935365|gb|EDO91035.1| putative survival protein SurA [Burkholderia pseudomallei Pasteur
52237]
Length = 448
Score = 71.4 bits (172), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 49/174 (28%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 38 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERI 92
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + + +R+ +G+ ++
Sbjct: 93 QVQRAKDDGIVVDNATVQATLGRLA--QANGMQLDQ--YKARIEAQGVPWDLFVRDARTE 148
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V + + + + P+NA
Sbjct: 149 LMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAP 202
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 36/376 (9%), Positives = 103/376 (27%), Gaps = 9/376 (2%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ K+ + +LA+ G L +
Sbjct: 74 PPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQANGMQLDQYKARIEA 133
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ D+ + D+ L + A V++ S ++D+ +
Sbjct: 134 QGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHI 193
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
KA + + + A G ++ + + G P
Sbjct: 194 FVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPAS 253
Query: 437 --EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ V + +PDG + ++ +++ +
Sbjct: 254 LPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRV 313
Query: 495 TAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ S+A Q +++ + G +F + + +Q + + +
Sbjct: 314 GEGKSESQARQQLIDIRRQIESGGDFEKFARTYSQD-GSASQGGDLGWISPGETVPEFER 372
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIA 608
+ + P+ Y + +V + + + + Q + +
Sbjct: 373 AMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLR 432
Query: 609 YLKSQYSVTVHDNLIQ 624
L+ V + + Q
Sbjct: 433 ELRDSSYVQIKLPVAQ 448
>gi|126441500|ref|YP_001057745.1| putative survival protein SurA [Burkholderia pseudomallei 668]
gi|134279812|ref|ZP_01766524.1| putative survival protein SurA [Burkholderia pseudomallei 305]
gi|217419752|ref|ZP_03451258.1| putative chaperone surA [Burkholderia pseudomallei 576]
gi|226830776|ref|YP_001064989.2| putative survival protein SurA [Burkholderia pseudomallei 1106a]
gi|237810895|ref|YP_002895346.1| chaperone SurA [Burkholderia pseudomallei MSHR346]
gi|254258573|ref|ZP_04949627.1| putative chaperone surA [Burkholderia pseudomallei 1710a]
gi|126220993|gb|ABN84499.1| putative chaperone surA [Burkholderia pseudomallei 668]
gi|134249012|gb|EBA49094.1| putative survival protein SurA [Burkholderia pseudomallei 305]
gi|210148311|gb|ABN91359.2| putative chaperone SurA [Burkholderia pseudomallei 1106a]
gi|217397056|gb|EEC37072.1| putative chaperone surA [Burkholderia pseudomallei 576]
gi|237504702|gb|ACQ97020.1| chaperone SurA [Burkholderia pseudomallei MSHR346]
gi|254217262|gb|EET06646.1| putative chaperone surA [Burkholderia pseudomallei 1710a]
Length = 450
Score = 71.4 bits (172), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 49/174 (28%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 40 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERI 94
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + + +R+ +G+ ++
Sbjct: 95 QVQRAKDDGIVVDNATVQATLGRLA--QANGMQLDQ--YKARIEAQGVPWDLFVRDARTE 150
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V + + + + P+NA
Sbjct: 151 LMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAP 204
Score = 46.8 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 36/376 (9%), Positives = 103/376 (27%), Gaps = 9/376 (2%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ K+ + +LA+ G L +
Sbjct: 76 PPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQANGMQLDQYKARIEA 135
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ D+ + D+ L + A V++ S ++D+ +
Sbjct: 136 QGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHI 195
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
KA + + + A G ++ + + G P
Sbjct: 196 FVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPAS 255
Query: 437 --EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ V + +PDG + ++ +++ +
Sbjct: 256 LPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRV 315
Query: 495 TAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ S+A Q +++ + G +F + + +Q + + +
Sbjct: 316 GEGKSESQARQQLIDIRRQIESGGDFEKFARTYSQD-GSASQGGDLGWISPGETVPEFER 374
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIA 608
+ + P+ Y + +V + + + + Q + +
Sbjct: 375 AMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLR 434
Query: 609 YLKSQYSVTVHDNLIQ 624
L+ V + + Q
Sbjct: 435 ELRDSSYVQIKLPVAQ 450
>gi|253995959|ref|YP_003048023.1| SurA domain-containing protein [Methylotenera mobilis JLW8]
gi|253982638|gb|ACT47496.1| SurA domain protein [Methylotenera mobilis JLW8]
Length = 434
Score = 71.4 bits (172), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/222 (13%), Positives = 68/222 (30%), Gaps = 15/222 (6%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R S+ + + + F A V V + + +
Sbjct: 2 LRNFSK------ISLFIALSFSQLNCLAAADVTKMDRIVAIVDQSVITEQELESRIVSLS 55
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ ++ +E + L K+IL+ L+S A Q+ G++ D ++ I R
Sbjct: 56 AQLKKQG-----TELPEASILRKQILERLISDALQLQYAAQTGIKVDDMQLDKTIERI-- 108
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
+ NK + F L ++GI+ +++ ++ + V +
Sbjct: 109 --AEQNKMTVREFYDALNQDGISVRKFRSDIRNEITIARLREREVESRVNVSESEIDNYL 166
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
+ + + H+ A K K +
Sbjct: 167 TTQASTNQNQDEYEISHILIRVPEDAATEDVQKAKTKVDEIF 208
>gi|167814327|ref|ZP_02446007.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei 91]
gi|122070637|sp|Q63X78|SURA_BURPS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
Length = 448
Score = 71.4 bits (172), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 49/174 (28%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 38 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERI 92
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + + +R+ +G+ ++
Sbjct: 93 QVQRAKDDGIVVDNATVQATLGRLA--QANGMQLDQ--YKARIEAQGVPWDLFVRDARTE 148
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V + + + + P+NA
Sbjct: 149 LMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAP 202
Score = 46.8 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 36/376 (9%), Positives = 103/376 (27%), Gaps = 9/376 (2%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ K+ + +LA+ G L +
Sbjct: 74 PPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQANGMQLDQYKARIEA 133
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ D+ + D+ L + A V++ S ++D+ +
Sbjct: 134 QGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHI 193
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
KA + + + A G ++ + + G P
Sbjct: 194 FVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPAS 253
Query: 437 --EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ V + +PDG + ++ +++ +
Sbjct: 254 LPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRV 313
Query: 495 TAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ S+A Q +++ + G +F + + +Q + + +
Sbjct: 314 GEGKSESQARQQLIDIRRQIESGGDFEKFARTYSQD-GSASQGGDLGWISPGETVPEFER 372
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIA 608
+ + P+ Y + +V + + + + Q + +
Sbjct: 373 AMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLR 432
Query: 609 YLKSQYSVTVHDNLIQ 624
L+ V + + Q
Sbjct: 433 ELRDSSYVQIKLPVAQ 448
>gi|332283295|ref|YP_004415206.1| survival protein [Pusillimonas sp. T7-7]
gi|330427248|gb|AEC18582.1| survival protein [Pusillimonas sp. T7-7]
Length = 489
Score = 71.4 bits (172), Expect = 5e-10, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 9/135 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V +Q + + + ++ V + L K++L ++
Sbjct: 46 DGIAAVVNKQVITLQQVNKEARLAQEQLQRQNIPVPDYA-----VLQKQVLQRMIMEELE 100
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E +G++ +V + + N+ + + + + G +Y+ + +
Sbjct: 101 RQEAERLGIKVSDAQVSQAVQTI----AERNRITPKQLRAEIEKTGGKWDDYLQGLRQEV 156
Query: 160 SRTDVVGMFVGGMRP 174
+ V
Sbjct: 157 RTDLLRQRTVDSTIV 171
>gi|302343060|ref|YP_003807589.1| SurA domain protein [Desulfarculus baarsii DSM 2075]
gi|301639673|gb|ADK84995.1| SurA domain protein [Desulfarculus baarsii DSM 2075]
Length = 327
Score = 71.4 bits (172), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/160 (13%), Positives = 52/160 (32%), Gaps = 6/160 (3%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK-QELGMISQKIGFV 74
+ + FV L+ L + V VG + + + S + + +
Sbjct: 6 VIAGLAFVTMAFAPLA-VLAEELVNRVVAVVGDEPITAAELDRSIQGLLQRLQMMQQQQG 64
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
N + + L++L+ ++ +E + + V + R N +
Sbjct: 65 QNMAMPPAAEVRYMALNSLIDEKLFNKEVERLKISVSEEEVSMFLERLKA----ANNMTQ 120
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
F++RL G+ +EY + + ++ V
Sbjct: 121 QEFIARLNETGMTPEEYREKVRNDQLKRKLINYEVKNKVV 160
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 18/210 (8%), Positives = 56/210 (26%), Gaps = 3/210 (1%)
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + E + L R + +K Y+ +
Sbjct: 117 NMTQQEFIARLNETGMTPEEYREKVRNDQLKRKLINYEVKNKVVISDKEVDDYLAEHPEL 176
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
+ + L + ++ +KA L E +G +F ++ +
Sbjct: 177 VQGGGPQLTIQALFLKLPENAGDDVKAQLRAKAEALREEAV-DGADFDEMCRANSQGPGA 235
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV--VFKVTNSKVGPVQEKD 588
+ + + + + + +T+ K G + +D
Sbjct: 236 ASGGKIGPLSKSDLLPEMGKALETMKEGDMSPVLDIPSGVVFMRLISLTDGKEGSAEVRD 295
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + L ++ + L+++ + +
Sbjct: 296 QVRARLENNQLEERFGEWMKELRAKTYIQI 325
>gi|71733994|ref|YP_272934.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71554547|gb|AAZ33758.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 440
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 31 ESVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 86 LQMGERSGIRVSDNELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|331017629|gb|EGH97685.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 440
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ V + L ++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAAD-----LQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ ++ + + +
Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|327541670|gb|EGF28194.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopirellula
baltica WH47]
Length = 599
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 66/606 (10%), Positives = 163/606 (26%), Gaps = 54/606 (8%)
Query: 20 VLFVPFL--IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+L F+ + G S + +S V V + S + Q+ G
Sbjct: 23 LLAAAFVAILSGFSTMRVEAAENSVVAVVNADPISRDSLATA-------SVQRYGTD--- 72
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+LDNL++ + Q + GL V EI R K + + +
Sbjct: 73 -----------VLDNLINRHLIMQECKRRGLGVTTEEVRTEINRV----AKKFGLNVESY 117
Query: 138 VSRL-AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ L I +Y + + + +F + +V
Sbjct: 118 LQLLNEERDITPDQYSREIIWPMLALRKLVADEVAVSQDEFNRAIVSQFGEAIKCRMVMV 177
Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
+ + + A + + K+ P + ++ + I +
Sbjct: 178 QDKSQATQLRAQAVAEPSSFARLAKEFSEDPTSASVGGLIPPIRRYMGDETIEEAAFALK 237
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ E + Q V + ++ + L +
Sbjct: 238 VDEVSELLPVGDHWMFLQAVRRMPASTPSPQAMPAIKDQIEDRIRDEKMKTAASQLFAQL 297
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+E V + + AK +I+G + + S E +I ++
Sbjct: 298 QEQAQVVKILGDPQASAKHPGVAAIINGQQVSISNVAAECIKRHGESVLEG--EINRKLL 355
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
++ K+ + ++ + + D + G I
Sbjct: 356 TQALAKAGKKVTNEDLKAEIERAAISFGYMTDNGSADVQGWFDAVLEGGPGTREVYI--- 412
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ + L +D TV + + + + ++A
Sbjct: 413 -EDVVWPSVALKKLVEDKTVLTQE---------DLQIGFESHYGPRAEVLACVLSDQRSA 462
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS-QVFSG 555
++V A + F + ++++ ++ + G + +VF
Sbjct: 463 QKVWEMARDNPTDQF-----FGQLANQYSIEPVSSSNFGKVPPIKRHGGQPSVEKEVFQM 517
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI----AYLK 611
+ I G Y++ + V + + L ++ + ++ + LK
Sbjct: 518 KPGDLSGI-IATGDKYIILRCQGFTEPVVSDFEAVQEELRSVLIEKKMNVAMSLKYDELK 576
Query: 612 SQYSVT 617
+
Sbjct: 577 QTAEID 582
>gi|289670942|ref|ZP_06492017.1| peptidyl-prolyl cis-trans isomerase [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 463
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/186 (10%), Positives = 48/186 (25%), Gaps = 9/186 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + +L + + + A S V V S + + +
Sbjct: 2 TKPFSVVLASLLAITSTVSPFASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAG 61
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ LV + G+ + IA +G
Sbjct: 62 RENQ-LPPDDV----LQRQVLERLVLVKLQVGRADGSGIRVSDEELNRAIASIAQQNGTT 116
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
D +LA +G+ ++ + + F +
Sbjct: 117 V----DGLRQKLAADGMGYADFRASVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAA 172
Query: 190 RSVDYI 195
Y
Sbjct: 173 TGSQYH 178
>gi|53718302|ref|YP_107288.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei K96243]
gi|52208716|emb|CAH34652.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei K96243]
Length = 450
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 49/174 (28%), Gaps = 9/174 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + Q+ V +++ L ++L+ +V
Sbjct: 40 ADEVVAVVNNDVITGRELDQRVGLIARRLQQQKAPVPPTDQ-----LRAQVLNQMVLERI 94
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q +D G+ D+ V + R + + +R+ +G+ ++
Sbjct: 95 QVQRAKDDGIVVDNATVQATLGRLA--QANGMQLDQ--YKARIEAQGVPWDLFVRDARTE 150
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + + V + + + + P+NA
Sbjct: 151 LMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHIFVKAPANAP 204
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 36/376 (9%), Positives = 103/376 (27%), Gaps = 9/376 (2%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++ + +E++ K+ + +LA+ G L +
Sbjct: 76 PPTDQLRAQVLNQMVLERIQVQRAKDDGIVVDNATVQATLGRLAQANGMQLDQYKARIEA 135
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ D+ + D+ L + A V++ S ++D+ +
Sbjct: 136 QGVPWDLFVRDARTELMLSKLREKEVDSKITVSDAEVASYIASQRGPNAGSQQDLRLEHI 195
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
KA + + + A G ++ + + G P
Sbjct: 196 FVKAPANAPQADIDVAQKKAEGLLQQALASGANFERLAKNQSEADDAKKGGDLGFKSPAS 255
Query: 437 --EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ V + +PDG + ++ +++ +
Sbjct: 256 LPSDVVDAVSKLRPGEVNPTLIRVPDGFEIVRLVERRASQNPAASPKIVQTHVRHILLRV 315
Query: 495 TAEEVSSKANQLVLEYS---KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ S+A Q +++ + G +F + + +Q + + +
Sbjct: 316 GEGKSESQARQQLIDIRRQIESGGDFEKFARTYSQD-GSASQGGDLGWISPGETVPEFER 374
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIA 608
+ + P+ Y + +V + + + + Q + +
Sbjct: 375 AMNTLQDGQVSNPVRTEYGYHLIQVLGRRDAEGSVQQQMDIARQAIGQRKAEQAYSDWLR 434
Query: 609 YLKSQYSVTVHDNLIQ 624
L+ V + + Q
Sbjct: 435 ELRDSSYVQIKLPVAQ 450
>gi|311104077|ref|YP_003976930.1| chaperone surA [Achromobacter xylosoxidans A8]
gi|310758766|gb|ADP14215.1| chaperone surA [Achromobacter xylosoxidans A8]
Length = 532
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/498 (10%), Positives = 121/498 (24%), Gaps = 73/498 (14%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + ++ + G + + G V ++ L ++L L+
Sbjct: 64 DGIAAVVDKDVITLRELRDASLRISGELKSR-GIQVPDDQT----LQHQVLQRLIMERVQ 118
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ +G+ D +V I NK + + + G + Y +
Sbjct: 119 RHEADRLGIRVDDAQVDQAIQTIAA----RNKITVAQLRQEIEKSGTHWDGYRKSLRDEI 174
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ V S+A + + +
Sbjct: 175 RTDRLRQRAVDSTIV---------------------------------ISDAEVDAFLKD 201
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ N + + + + + + + + + + +
Sbjct: 202 QRRNPAFGAAPQAAPQPQPQAQPQPEPQQAAAPSGPMLYALAQILVRVPEGSSPEQLAAL 261
Query: 280 QKEADEAFQSLKKGKKFIQL---AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
+K+A+ K+G F L A + ++L +G + PD+ + +KG
Sbjct: 262 RKKAEGLLAQAKRGDDFASLAAAASDGPEALQGGVMGVRPLDGWPDLFVQAVS--NLQKG 319
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
+ +I G+ I V + + + + Q A+ ++ E +
Sbjct: 320 QVSSLIQSGNGFHIIKVMDRGTAQPAPARTARAPAPAQAPQPAAAPAQAPAHQGPVEVMQ 379
Query: 397 LGTS----MDEISRREKIVSIDLPLV--------------------DFAGKDVKGKEVAA 432
+++ L V D
Sbjct: 380 TRARHILIKTSTVMSDELARQRLEQVRQRLVSGGAKFEDMARQYSQDATAPQGGELGWLN 439
Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
P V P G ++ E D + ++
Sbjct: 440 PGETVPPFEAAMNALKPGEISQPVQSPFGWHLI--EVEERRQHDATDDMARMKARQILFE 497
Query: 493 VKTAEEVSSKANQLVLEY 510
+ QL +
Sbjct: 498 RRAQPAFEDWLEQLRAQA 515
Score = 39.8 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 13/149 (8%), Positives = 38/149 (25%), Gaps = 4/149 (2%)
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
++ + TV + E + Q+ G F D+ +
Sbjct: 371 HQGPVEVMQTRARHILIKTSTVMSDELARQRLEQVRQRLVSGGAKFEDMARQYSQDATAP 430
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK-- 589
+ N + P+++ + + +V + +
Sbjct: 431 QG-GELGWLNPGETVPPFEAAMNALKPGEISQPVQSPFGWHLIEVEERRQHDATDDMARM 489
Query: 590 -FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
L + + + + L++Q +
Sbjct: 490 KARQILFERRAQPAFEDWLEQLRAQAYID 518
>gi|302130724|ref|ZP_07256714.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
tomato NCPPB 1108]
Length = 440
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ V + L ++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAAD-----LQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ ++ + + +
Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|15643674|ref|NP_228720.1| basic membrane protein, putative [Thermotoga maritima MSB8]
gi|4981448|gb|AAD35993.1|AE001755_16 basic membrane protein, putative [Thermotoga maritima MSB8]
Length = 329
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/313 (10%), Positives = 92/313 (29%), Gaps = 15/313 (4%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS--SFINSWKQELGMISQKIGF 73
IF+++ + ++G + + S+ V V + + L I+Q
Sbjct: 5 IFVILAVLGISLFG----QATTTSSTVVAIVNGEPITSDLLELEADIDGILRSIAQIDMR 60
Query: 74 VVNSERARSVGLD------KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
N GL +++L++L+ + Q E G+ V E+
Sbjct: 61 FFNVLTGTEEGLKLLLKYKQEVLNSLIDDLLIQQLAEKEGVGVSDEEVKKEVEARLKETV 120
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
+ + + L G + E +T + + N + + +
Sbjct: 121 ESMGITLEDLDKFLQSAGYGDLETFKKRLHWHVKTQLSLQRLQEKITQNATVTLEEAQNY 180
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
N++ + + + ++ +
Sbjct: 181 YNQNKETYRIPAAVHLYRITTEDKSKMDEVLSKIRKGEDFLEVATQVATGGDLGWIEEGK 240
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---DEAFQSLKKGKKFIQLAEEQG 304
+ D ++ + P + +++ ++ + F+ +K+ LA+++
Sbjct: 241 LEKDIESVIFDAPEGAILGPFESEGKFVLYKVVEKRSSSYKKFEEVKQEIMDKLLADKRN 300
Query: 305 KSLSDISLGSFSK 317
+ +D F +
Sbjct: 301 QLWNDWFNKVFEE 313
>gi|326319525|ref|YP_004237197.1| SurA domain-containing protein [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323376361|gb|ADX48630.1| SurA domain protein [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 476
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 43/472 (9%), Positives = 112/472 (23%), Gaps = 79/472 (16%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + + + + ++ + G L +++L+ L++ Q
Sbjct: 72 IVAVVNTEPITNNEVQARLARVEHQLAAQGGERPP-----RQVLAREVLERLINEKIQVQ 126
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G++ D + + N S RLA +GI+ + + +
Sbjct: 127 MAIESGIKVDDYAISQAEQSV----ARQNSVSIPEMHRRLAADGISPERFRSELRNQMLI 182
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ V ++ + Q+ +
Sbjct: 183 QRLRERDVESR---------------------------------VRVTDLDVDQYMRDQQ 209
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ + + ++V ++
Sbjct: 210 QSAISDPS-------------------------KIELNLANILVAVPENATPEVVEQRRQ 244
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
A +A ++ G+ F ++A E + LG + PD+ + G
Sbjct: 245 RAQQAADRVRAGEDFAKVARELSDAPDAPIGGELGLRPADRYPDLFVR--TVQQVPVGGI 302
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ G+ + V + + + + ++ E
Sbjct: 303 AGPVRSPAGFHVLRVLERSRA---GIPSSAVQTHVRHILLRTGPQLTEAAAAERLAEYRR 359
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ + + D + K A P +
Sbjct: 360 RILSGQADFATLAREHSQ--DGSAKQGGDLGWAGPGRYVPEFEEAVEALKPDEISQPIVS 417
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
G ++ ++ E V+ + K E ++ A +
Sbjct: 418 RFGVHLIQLLERREAK--LTQREQRDMVRDAVREKKLEEAFTNWAQEARARA 467
>gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl cis-trans isomerase [Herbaspirillum
seropedicae SmR1]
gi|124483574|emb|CAM32660.1| Parvulin-like peptidyl-prolyl [Herbaspirillum seropedicae]
gi|300072826|gb|ADJ62225.1| parvulin-like peptidyl-prolyl cis-trans isomerase protein
[Herbaspirillum seropedicae SmR1]
Length = 496
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 48/135 (35%), Gaps = 9/135 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S +V V + + + + +S + + ++ L +++++ ++
Sbjct: 90 DSIMVVVNNEVITRQEVADRLASVVKRMSAQNVQLPPRDQ-----LVRQLVERMIVERAQ 144
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q ++ G+ D + + R NK S F +RL EG+N + + + +
Sbjct: 145 AQMAKENGIVVDDAMLDRAMQRI----ADQNKLSMAQFRTRLEAEGMNYASFREEIRREI 200
Query: 160 SRTDVVGMFVGGMRP 174
+ V
Sbjct: 201 LSQRLREREVDNKVV 215
>gi|238782669|ref|ZP_04626699.1| Chaperone surA [Yersinia bercovieri ATCC 43970]
gi|238716329|gb|EEQ08311.1| Chaperone surA [Yersinia bercovieri ATCC 43970]
Length = 434
Score = 71.0 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 9/154 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + ++ + V V S + +Q+ G V +
Sbjct: 7 LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLN-AQQAGQQVPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ + Q + +G+ + IA N+ + SR
Sbjct: 64 --ATLRHQILERLIMDSIQLQMAKKMGITVSDEALDKAIADIAA----QNRMTPAQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
LA +G+N Y + K + ++V V
Sbjct: 118 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRIT 151
Score = 37.5 bits (84), Expect = 7.1, Method: Composition-based stats.
Identities = 17/198 (8%), Positives = 51/198 (25%), Gaps = 7/198 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G+ + LF + + +++ + E
Sbjct: 229 GQMGWGKLQELPSLFAEKLQSANKGDVVGPIRSGVGFHILKVNDIRGADKTVSVTEVHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V T ++ +K + F +I K + + Q +
Sbjct: 289 HILLKPSPVMTDDQARAKLAAAAADIKSGKTTFANIAKEISQDPGSAVQGGDLGWASPDI 348
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + + P+ + + + +V + +KD+ L
Sbjct: 349 YDPAFRDALMKLQKGEI-SAPVHSSFGWHLIQVVDTRQVDKTDAAQKDRAYRMLFSRKFA 407
Query: 601 DLLDSVIAYLKSQYSVTV 618
+ + + ++ V +
Sbjct: 408 EEAQTWMQEQRAAAYVKI 425
>gi|163855066|ref|YP_001629364.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii DSM
12804]
gi|163258794|emb|CAP41093.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii]
Length = 516
Score = 71.0 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 15/173 (8%), Positives = 48/173 (27%), Gaps = 10/173 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + + + + + V + L +++L +L+
Sbjct: 59 DGIAAVVNKDVITLREVESGAARATEDLKHRGIQVPPPD-----VLRRQVLQSLIMERLQ 113
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + +G+ + ++ I N+ + + + G+ +Y +
Sbjct: 114 KQEADRLGIRVNDAQIDQAIETI----AGRNRIPVAQMRAEIEKSGVTWAQYRQSLGNDI 169
Query: 160 SRTDVVGMFVGGM-RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ V ++ +D + N + P+ +
Sbjct: 170 RMNRLRQRAVDSNIIITDAEVDAFLKDRAHNPAAGTGFSGQPAGQRAPQPTQS 222
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 15/158 (9%), Positives = 46/158 (29%), Gaps = 4/158 (2%)
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ + + V + ++ + Q+ G +F D+ +
Sbjct: 355 HQGPVQVTQTHARHILIKTSAVMSDDQARQRLEQIRQRIVNGGASFADMARQYSQDANAP 414
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS---KVGPVQEKD 588
+ + + PV V P+ + + + +V V ++
Sbjct: 415 QGGDLGWVNPGEMVPSFEQAMNALPVGGVSQ-PVLSPFGWHLIQVEERREHDVSDELQRM 473
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ L + + + +A L+++ + +R
Sbjct: 474 QARQILFERRAEPAFEDWLAQLRNEAYIDNRLEKQERI 511
>gi|330878394|gb|EGH12543.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963847|gb|EGH64107.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 440
Score = 71.0 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ V + L ++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAAD-----LQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S D F + LA +G++ + + + +
Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVDQFRAALAHDGLSYNDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|325917324|ref|ZP_08179542.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
ATCC 35937]
gi|325536458|gb|EGD08236.1| parvulin-like peptidyl-prolyl isomerase [Xanthomonas vesicatoria
ATCC 35937]
Length = 463
Score = 71.0 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/202 (10%), Positives = 53/202 (26%), Gaps = 9/202 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + +L + + L+ A S V V S + + +
Sbjct: 2 TKPFSVLLASLLVITSTVSPLASAQQSQPLDRIAAIVDEDVVLQSELDRAVRNVKSQYAG 61
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + L +++L+ LV + G+ + IA +G
Sbjct: 62 RENQ-LPPDDV----LQRQVLERLVLVKLQVGRADGSGIRVSDEELNRAIASIAQQNGTT 116
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
D +LA +G+ ++ + + F +
Sbjct: 117 V----DGLRQKLAADGMAYGDFRSSVRDEIIVQRLRQSFAQSRISVSEGEVDTALAQQAT 172
Query: 190 RSVDYIVLNNRHVPAIADPSNA 211
Y + + ++
Sbjct: 173 TGSQYHLAHILVGLPEGATADQ 194
>gi|218960354|ref|YP_001740129.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
[Candidatus Cloacamonas acidaminovorans]
gi|167729011|emb|CAO79922.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
[Candidatus Cloacamonas acidaminovorans]
Length = 418
Score = 71.0 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 54/471 (11%), Positives = 125/471 (26%), Gaps = 81/471 (17%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V VG + S Q + + +LD +++ +
Sbjct: 23 DKIVAKVGTDIILLSDLQKEMVQMQ-----------SVGLLEEDTDPRDVLDEMINQKLI 71
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q +D+ + + + +A + L K S F + L + + E + + Y +L
Sbjct: 72 IQKAKDLNITVNDEEI-KVMAENYLKKVKAQYPSSSAFAADLKKSKLTESDLLQLYRDIL 130
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + + + + + A + ++
Sbjct: 131 TEQALS-----------------------------DQILKKEIINKVSVTEAEVINFYNA 161
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
KD+ + I E++ + + K
Sbjct: 162 TKDSLAVKP-------------VSWDLGIIFREIKPNQKSKEAKLAE------------- 195
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
KE ++ + + LG F + + + + G+ +
Sbjct: 196 IKEIQTRLKNGEDFATLASTESDCPSKEVGGDLGFFKRGQMVKPFEDAA--FALQLGEIS 253
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
++ +GY I + + + + +K + + ++E R + + +
Sbjct: 254 DIVESEYGYHIIRLEEKRGNEIRARHILKALTPTAEDSLRERQLMEEIRNRYAKGESFAS 313
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
E S D ++ G LF P+ + V
Sbjct: 314 LAREYSM------------DQESREDGGSLGEFTERDLPSLFATQILQTPVGEMTPVLEN 361
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
G + P R K EEV ++ K + ++ L E
Sbjct: 362 QGMLYIFCRLKEYPPRIYKYEEVKDQAREMVLKRKQIDAFNAWIENLRREA 412
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 31/269 (11%), Positives = 78/269 (28%), Gaps = 13/269 (4%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK----IVSI 413
+ K +A + +E + A + EI R K ++
Sbjct: 153 AEVINFYNATKDSLAVKPVSWDLGIIFREIKPNQKSKEAKLAEIKEIQTRLKNGEDFATL 212
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D K+V G + F L + + + Y ++++E
Sbjct: 213 ASTESDCPSKEVGGDLGFFKRGQMVKPFEDAAFALQLGEISDIVESEYGYHIIRLEEKRG 272
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TN 532
R + K + + + +G++F + + + +
Sbjct: 273 NEIRARH-----ILKALTPTAEDSLRERQLMEEIRNRYAKGESFASLAREYSMDQESRED 327
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---GPVQEKDK 589
+ + + +Q+ PV + G+ Y+ ++ + KD+
Sbjct: 328 GGSLGEFTERDLPSLFATQILQTPVGEMTPVLENQGMLYIFCRLKEYPPRIYKYEEVKDQ 387
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + D ++ I L+ + V +
Sbjct: 388 AREMVLKRKQIDAFNAWIENLRREAYVQI 416
>gi|121611714|ref|YP_999521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
eiseniae EF01-2]
gi|121556354|gb|ABM60503.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
eiseniae EF01-2]
Length = 482
Score = 71.0 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 54/481 (11%), Positives = 117/481 (24%), Gaps = 76/481 (15%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
D+ + V V + V + + + I+++ + + E L ++L+
Sbjct: 67 DSSATGWADFIVAVVNSEPVTNNEVRSRLVRAEAQIARQGASMPSREW-----LAHEVLE 121
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
L+ Q + G+ D + + N + + F +RL R+GI ++ +
Sbjct: 122 RLILERVQLQQARESGIRVDDFALAQA----EQGVARQNGMTLEQFYARLERDGIGKERF 177
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
L + V S
Sbjct: 178 RAELRDQLLEQRLREREVDAR---------------------------------VQVSEQ 204
Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
+ Q+ + I+ V E E +A ++
Sbjct: 205 DIDQYLHAEPPAGAQAKPMEINLGHVLVLVPEDATPAQVAERRARAQQA----------- 253
Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD--VSLADSI 329
+ L+ G F +A E + G D L S
Sbjct: 254 ---------------AERLRSGADFATVAREFSDAPEGQRAGGMLGLRPVDRYPELFVSS 298
Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
G + G+ + V + + +R + +
Sbjct: 299 TRGLPVGSLVGPVRSPAGFHLLKVEQRVIAGQPATVLQSHARHILLRTGPRMSETAAAER 358
Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
+ + + + + S D G +P EQ L + P
Sbjct: 359 LADYRRRVLAGQADFAALAREHSQDDGSAKKGGDLGWANPGQYVPEFEQALQAL----QP 414
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
+ G ++ ++ + E ++ + K + S L
Sbjct: 415 GDISAPLVTRFGVHLIELLERRQAS--LTAREQRDMARQAVREKKLDQAYISWTQDLRAR 472
Query: 510 Y 510
Sbjct: 473 A 473
>gi|307265095|ref|ZP_07546655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306919893|gb|EFN50107.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 301
Score = 71.0 bits (171), Expect = 6e-10, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 40/124 (32%), Gaps = 6/124 (4%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ + F ++ + + + V +V + + + + ++ Q I + +
Sbjct: 5 IALLLFFVFIVFLTVSCSTKKDVVATVNGENITNAEYKKAFDQVKAQIESSPQYTKDIWD 64
Query: 80 ARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
G + + +LD+L++ L Q + + E + + K
Sbjct: 65 QDYQGKKFLDVVKENVLDSLIAQKLLVQEALKNNITVTDKEIADEYQKEKEVNKDITKED 124
Query: 134 HDVF 137
+
Sbjct: 125 VKNY 128
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 30/254 (11%), Positives = 76/254 (29%), Gaps = 11/254 (4%)
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
+ + +++ + ++ + K L + V+
Sbjct: 40 EYKKAFDQVKAQIESSPQYTKDIWDQDYQGKKFLDVVKENV--LDSLIAQKLLVQEALKN 97
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI-KESIPARDRKLEEVLTDVKKDW 490
I ++ + + K+ ++KD T + ++ E EE+ + +
Sbjct: 98 NITVTDKEIADEYQKEKEVNKDITKEDVKNYLLINKLFDEYTKDVKVTEEELKKYYEDNK 157
Query: 491 KTVKTAEE-----VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFF 544
+ + + K + + +G++F + K T +Q + +
Sbjct: 158 EQFEVVKASHILVADEKTAEDIYNRLMKGEDFATLAKEYSIDTATKDQGGDLGEFPHGVM 217
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLTQMMNKDLL 603
+ VFS + P++ Y + K + P E KD YL ++
Sbjct: 218 VSEFDQVVFSLKKGEI-SKPVKTDYGYHIIKSEGITIKPFDEVKDAIEGYLLDDKKNQVI 276
Query: 604 DSVIAYLKSQYSVT 617
L+ +
Sbjct: 277 KEKYDALEKAAKIQ 290
>gi|332160260|ref|YP_004296837.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325664490|gb|ADZ41134.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
Length = 434
Score = 70.7 bits (170), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 9/154 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + ++ + V V S + +Q+ G V +
Sbjct: 7 LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLN-AQQAGQQVPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ Q + +G+ + IA N+ + SR
Sbjct: 64 --ATLRHQILERLIMDNIQLQMAKKMGITISDEALDKAIADIAA----QNRMTPAQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
LA +G+N Y + K + ++V V
Sbjct: 118 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRIT 151
Score = 37.9 bits (85), Expect = 5.5, Method: Composition-based stats.
Identities = 29/371 (7%), Positives = 89/371 (23%), Gaps = 9/371 (2%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++ + K+ K +A + + + +
Sbjct: 58 QQVPDDATLRHQILERLIMDNIQLQMAKKMGITISDEALDKAIADIAAQNRMTPAQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ D + + + V ++ + +
Sbjct: 118 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I ++ + E+ S + ++I D +
Sbjct: 178 HILIPLPENPSQQQVDQAEDLAKKLVSDIKGGADFGKLAI-ANSADSQALKGGQMGWGKL 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWK 491
L + G + +++ + E +
Sbjct: 237 QELPSLFAERLQSASKGDVVGPIRSGVG-FHILKVNDIRGTDKTISVTEVHARHILLKPS 295
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGIS 550
V T ++ +K + NF I K + + Q + +
Sbjct: 296 PVMTDDQARAKLTAAAADIKSGKANFATIAKEISQDPGSAMQGGDLGWASPDIYDPAFRD 355
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ + P+ + + + +V + +KD+ L + + +
Sbjct: 356 ALMKLQKGEI-SAPVHSSFGWHLIQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWM 414
Query: 608 AYLKSQYSVTV 618
++ V +
Sbjct: 415 QEQRAAAYVKI 425
>gi|188591256|ref|YP_001795856.1| peptidyl-prolyl cis-trans isomerase (ppiase), involved in
maturation of outer membrane proteins [Cupriavidus
taiwanensis LMG 19424]
gi|170938150|emb|CAP63136.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
maturation of outer membrane proteins [Cupriavidus
taiwanensis LMG 19424]
Length = 489
Score = 70.7 bits (170), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/180 (12%), Positives = 43/180 (23%), Gaps = 9/180 (5%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S V V + ++ + + G RA +G ++L
Sbjct: 69 GGQKRSQLIDEVVAVVNNSVITRRELLDRADEIESQLRA--GGRPVPARADLLG---EVL 123
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ LV Q +D G+ V I + N+ + R+ G+ +
Sbjct: 124 ERLVMERVQTQAAQDAGIRVTDQEVDRAIESV----AQQNQMNAAELRRRVEASGMTWTK 179
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
Y D K + + V + +
Sbjct: 180 YRDELRKQVQVIRLREREVDSKVQVYDGEIDNYLAARGGQGAAAGPTEYNMAQILVRVPE 239
>gi|147676453|ref|YP_001210668.1| parvulin-like peptidyl-prolyl isomerase [Pelotomaculum
thermopropionicum SI]
gi|146272550|dbj|BAF58299.1| parvulin-like peptidyl-prolyl isomerase [Pelotomaculum
thermopropionicum SI]
Length = 324
Score = 70.7 bits (170), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 57/146 (39%), Gaps = 19/146 (13%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+ K++R ++A +V+ + S S V +V +K+ ++
Sbjct: 1 MGKSTRQFIAAAVFLVIVA----------VLSGCSSRAVATVNGEKITAGELSQRLEEIK 50
Query: 65 GMISQKIGFVVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+ ++ GF + ++ ++ L ++ L+ +++ + Q + +G +V I
Sbjct: 51 SNLEKQ-GFDFSGDKGKAFMESLRQETLEQMINTRLMLQEAKKLG-PLTPEQVQEIIKPL 108
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINE 148
S + + LA+ ++E
Sbjct: 109 KEQFS-----SAEEYQDFLAQIKMSE 129
>gi|288958015|ref|YP_003448356.1| peptidyl-prolyl cis-trans isomerase [Azospirillum sp. B510]
gi|288910323|dbj|BAI71812.1| peptidyl-prolyl cis-trans isomerase [Azospirillum sp. B510]
Length = 485
Score = 70.7 bits (170), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/175 (13%), Positives = 45/175 (25%), Gaps = 10/175 (5%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
V + V S + L G N E + L +++ L+
Sbjct: 52 GSEGIAAVVNDEVVSVSDVNARIRMAL----LNAGGAANPETIQR--LTPQVMRLLIDER 105
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
Q + G+ + I R + N+ ++ L R+ + D
Sbjct: 106 LQMQEAKRQGVTVSASEIDDAIKRI----AEQNRMNNQQLQEMLKRQNVPVSTLKDQIRA 161
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+L+ V+ + A + L A+ P
Sbjct: 162 LLAWQKVMQRRIRQEVVVGEDEVDAAMERLKANIGKPEYLVAEIFLAVDSPDQDD 216
>gi|123440995|ref|YP_001004984.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122087956|emb|CAL10744.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318607170|emb|CBY28668.1| survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase SurA) [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 434
Score = 70.7 bits (170), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 9/154 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + ++ + V V S + +Q+ G V +
Sbjct: 7 LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLN-AQQAGQQVPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ Q + +G+ + IA N+ + SR
Sbjct: 64 --ATLRHQILERLIMDNIQLQMAKKMGITISDEALDKAIADIAA----QNRMTPAQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
LA +G+N Y + K + ++V V
Sbjct: 118 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRIT 151
Score = 37.9 bits (85), Expect = 5.9, Method: Composition-based stats.
Identities = 29/371 (7%), Positives = 89/371 (23%), Gaps = 9/371 (2%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++ + K+ K +A + + + +
Sbjct: 58 QQVPDDATLRHQILERLIMDNIQLQMAKKMGITISDEALDKAIADIAAQNRMTPAQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ D + + + V ++ + +
Sbjct: 118 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I ++ + E+ S + ++I D +
Sbjct: 178 HILIPLPENPSQQQVDQAEDLAKKLVSDIKGGADFGKLAI-ANSADSQALKGGQMGWGKL 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWK 491
L + G + +++ + E +
Sbjct: 237 QELPSLFAERLQSASKGDVVGPIRSGVG-FHILKVNDIRGADKTISVTEVHARHILLKPS 295
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGIS 550
V T ++ +K + NF I K + + Q + +
Sbjct: 296 PVMTDDQARAKLTAAAADIKSGKANFATIAKEISQDPGSAMQGGDLGWASPDIYDPAFRD 355
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ + P+ + + + +V + +KD+ L + + +
Sbjct: 356 ALMKLQKGEI-SAPVHSSFGWHLIQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWM 414
Query: 608 AYLKSQYSVTV 618
++ V +
Sbjct: 415 QEQRAAAYVKI 425
>gi|313200363|ref|YP_004039021.1| sura domain-containing protein [Methylovorus sp. MP688]
gi|312439679|gb|ADQ83785.1| SurA domain protein [Methylovorus sp. MP688]
Length = 438
Score = 70.7 bits (170), Expect = 8e-10, Method: Composition-based stats.
Identities = 54/467 (11%), Positives = 131/467 (28%), Gaps = 77/467 (16%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + V + + + ++ G + L+K+IL+ L++
Sbjct: 35 DRIVAVVDQGVVTEKELNDRIEIVSAQLEKQ-GNQLPP----RNVLEKQILERLINDRLQ 89
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q+ GL D ++ I R + NK F LA EGI K++ + +
Sbjct: 90 LQYAAQTGLRVDDDQLDKTIMRI----AEQNKMGVPEFKEALAAEGIVYKKFREDIRNEI 145
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ V + + + + +
Sbjct: 146 LLARLREREVDNR---------------------------------VNVTESEVDNFLTT 172
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ S ++L+ EK
Sbjct: 173 QSSR-----QDSSDEYEISHILIRAPEDGSPEDLKRLREK-------------------- 207
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
++A + Q+ + + + +L LG + +P +L + G +
Sbjct: 208 AEDALKKLQAGEDFGQVSARVSDAPNALEGGKLGWKTAAQVP--ALFLEALKPMQVGQLS 265
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
++ G+ I +++ + T + + ++ ++ E ++++ L
Sbjct: 266 GILRSPNGFHILKLTDRRGGNTSTMVQQTHTRHILIKTSEV-LSETEAKRKIDGIKQLID 324
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ ++ K S D + + + P V P
Sbjct: 325 NGEDFGEAAKRYSN-----DGSAANGGDLGWVNPGDTVPQFEKAMNALQPGQISDAVRSP 379
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
G ++ ++ R+ E + +++ + K E +L
Sbjct: 380 FGWHLIQVLERRNQDMTREAERMKA--RQEIRQRKADEAYQDWVREL 424
>gi|73540204|ref|YP_294724.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
JMP134]
gi|121956447|sp|Q475Q3|SURA_RALEJ RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|72117617|gb|AAZ59880.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
JMP134]
Length = 499
Score = 70.7 bits (170), Expect = 8e-10, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 40/147 (27%), Gaps = 13/147 (8%)
Query: 29 GLSDALFSVSGSS----TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
G+ S V V + ++ + +
Sbjct: 68 GVPQPSSGGKRSQLVDEVVAVVNNSVITRRELLDRADEIEAQLRTANRPAPPRAD----- 122
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
L ++L+ L+ Q +D G++ + I + N+ S R+
Sbjct: 123 LLGEVLERLIMERVQTQAAQDAGIKVTDQELDRAIESV----AQQNRLSATELRRRVEAS 178
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGG 171
G+ +Y D K + + V
Sbjct: 179 GMTWTKYRDELRKQVQVIRLREREVDS 205
>gi|257069381|ref|YP_003155636.1| SurA-like protein [Brachybacterium faecium DSM 4810]
gi|256560199|gb|ACU86046.1| SurA-like protein [Brachybacterium faecium DSM 4810]
Length = 269
Score = 70.7 bits (170), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 53/167 (31%), Gaps = 5/167 (2%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V +V + + F ++ + ++ + E L +++ + LV L
Sbjct: 75 DVVATVNGEDISKDEFTQIYESQFQQMAMQQQS--TGEEVDQAALKQQVAEQLVDNHLLL 132
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q + G+E + + ++ S D VS L ++G++E++ +
Sbjct: 133 QGASEAGIEPTDEDIDATLEEIAQ---QNGLGSADEVVSTLEQQGMSEEDVREDAASQHM 189
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
T + PS L E +S +
Sbjct: 190 LTAYIEQEADIEEPSEEELQAQYDQLVEQQSQAGGESSEVPPFEDVQ 236
>gi|207742369|ref|YP_002258761.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia
solanacearum IPO1609]
gi|206593759|emb|CAQ60686.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia
solanacearum IPO1609]
Length = 473
Score = 70.7 bits (170), Expect = 8e-10, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 9/141 (6%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S A S V V + ++ + + + L ++L
Sbjct: 57 SGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQAQNRPMPARAD-----LLGEVL 111
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ L+ Q ++ G+ V + + N S S+LA+ G+ +
Sbjct: 112 EQLILERVQAQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLAQSGLAYDK 167
Query: 151 YIDHYTKMLSRTDVVGMFVGG 171
Y + + + + V
Sbjct: 168 YREDLRQEILLARLRDREVDS 188
>gi|312963417|ref|ZP_07777899.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas fluorescens
WH6]
gi|311282223|gb|EFQ60822.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas fluorescens
WH6]
Length = 444
Score = 70.7 bits (170), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 10/151 (6%)
Query: 21 LFVPFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
L + L G + A +V V V + S K+ I+++ G V
Sbjct: 12 LVLGALFLGAASAHAAVQQLDKVVAIVDNDVIMQSQLDQRVKEVQQTIAKRGGGVPP--- 68
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
+ LD+++L+ L+ Q E G+ + + + N S D F +
Sbjct: 69 --TSVLDQQVLERLIVENLQLQIGERSGIRISDEELNQAVGTI----AQRNNMSIDQFRA 122
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA +G++ ++ D + + + V V
Sbjct: 123 ALAHDGLSYEDARDQIRREMIISRVRQRRVA 153
>gi|220935878|ref|YP_002514777.1| SurA domain protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219997188|gb|ACL73790.1| SurA domain protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 443
Score = 70.7 bits (170), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 20/177 (11%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIW----GLSDALFSVSGSSTVVSVGRQKVPFSSF 56
M+E IR L + + + GL+ V V + S
Sbjct: 1 MIE-IRNTL------FLLSAMALTLALAWPLQGLAQRADDAPLDHIVALVEDDVIMHSEL 53
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
N I + G + + L ++L+ L+ Q G+ D +
Sbjct: 54 QNRLDTVRQQILSR-GGRLPPDDV----LIPQVLERLIIERLQLQQATRAGIRIDDITLN 108
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
+ R ++N S F RL +GI+ + + + ++ + V
Sbjct: 109 QTMERI----ARENSMSLPEFRDRLVADGIDFQVFREQIRDEMTIGQLRRRQVENRI 161
>gi|149927949|ref|ZP_01916199.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
MED105]
gi|149823388|gb|EDM82621.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
MED105]
Length = 456
Score = 70.7 bits (170), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 9/142 (6%)
Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
G S+ + + V V + S +S++ G + + L K+
Sbjct: 42 GASNGSGAAAIDGIVAVVNTDIITRSELNRQVALIERQMSRR-GAPLP----DRIELRKQ 96
Query: 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
+LD +V Q E++G+ + ++ +AR N S + F++RL EG++
Sbjct: 97 VLDRMVMDRAQLQKAEEVGIRIEEAQIEAAMARV----ADQNGLSLEDFLARLQEEGVSP 152
Query: 149 KEYIDHYTKMLSRTDVVGMFVG 170
+ + ++ + V
Sbjct: 153 ARFREEVRSEITLGRLREREVE 174
Score = 42.2 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 21/240 (8%), Positives = 62/240 (25%), Gaps = 7/240 (2%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD-FAGKDVKGKEVAAIPYKEQLLFRVF 444
+ E + ++ + + D G+ + LF F
Sbjct: 215 DASGATLNQARGKVEAIEKALKDGKTVEAIVQTNPELAIDGTGQMGWSGFDAVPTLFSEF 274
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV-LTDVKKDWKT---VKTAEEVS 500
L+ T+ P+G ++ ++ V T + T E
Sbjct: 275 LSKAQLNAVQTIRSPNGFHVLKVLERRESGAALDSTPVTQTRARHILIRPGPDITEAEAR 334
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+ N + + F + K + + + ++ + V
Sbjct: 335 RRLNFALEQLQGGAATFDTLAKRYSQDGSASKGGDLGWLYPGDTVPEFEREMNQLGIGGV 394
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKF--ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+++ V + +E+ + + +++ + L+ + +
Sbjct: 395 SPVFQSRFGFHIIQVVERRQQAASEERQRQAARQAIRANKSEESYQEWLRQLRDATFIEI 454
>gi|326390841|ref|ZP_08212393.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
ethanolicus JW 200]
gi|325993100|gb|EGD51540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
ethanolicus JW 200]
Length = 301
Score = 70.7 bits (170), Expect = 8e-10, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 40/124 (32%), Gaps = 6/124 (4%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ + F ++ + + + V +V + + + + ++ Q I + +
Sbjct: 5 IALLLFFVFIVFLTVSCSTKKDVVATVNGENITNAEYKKAFDQVKAQIESSPQYTKDIWD 64
Query: 80 ARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
G + + +LD+L++ L Q + + E + + K
Sbjct: 65 QDYQGKKFLDVVKENVLDSLIAQKLLVQEALKNNITVTDKEIADEYQKEKEVNKDITKED 124
Query: 134 HDVF 137
+
Sbjct: 125 VKNY 128
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 31/254 (12%), Positives = 77/254 (30%), Gaps = 11/254 (4%)
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
+ + +++ + ++ + K L + V+
Sbjct: 40 EYKKAFDQVKAQIESSPQYTKDIWDQDYQGKKFLDVVKENV--LDSLIAQKLLVQEALKN 97
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI-KESIPARDRKLEEVLTDVKKDW 490
I ++ + + K+ ++KD T + ++ E EE+ + +
Sbjct: 98 NITVTDKEIADEYQKEKEVNKDITKEDVKNYLLINKLFDEYTKDVKVTEEELKKYYEDNK 157
Query: 491 KTVKTAEE-----VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFF 544
+ + + K + + +G++F + K T +Q + +
Sbjct: 158 EQFEVVKASHILVADEKTAEDIYNRLMKGEDFATLAKEYSIDTATKDQGGDLGEFPHGVM 217
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLTQMMNKDLL 603
+ VFS + P++ Y + K + P E KD SYL ++
Sbjct: 218 VSEFDQVVFSLKKGEI-SKPVKTDYGYHIIKSEGVAIKPFNEVKDAIESYLLNDKKNQVI 276
Query: 604 DSVIAYLKSQYSVT 617
L+ +
Sbjct: 277 KEKYDALEKAAKIQ 290
>gi|189423767|ref|YP_001950944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
SZ]
gi|189420026|gb|ACD94424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
SZ]
Length = 355
Score = 70.7 bits (170), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 51/168 (30%), Gaps = 7/168 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + F + + + +K + L +LD L+
Sbjct: 55 NGVAAIVNDDIITFREVLRESQAVIQDAQKKG----LVDDTARHNLRVMVLDRLIEKLLT 110
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+Q I+++G++ + I ++N + + L +G +Y + L
Sbjct: 111 EQKIKELGIKIGDDEIRQAIDDVKR---QNNNMTQSQLEAALKSQGYTFAQYEVQLREQL 167
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
R +V M V + + + + H+ D
Sbjct: 168 ERLRLVSMEVRSKIYVSEKEAEEYYQSHLSSYAEEETFKASHIFIKVD 215
Score = 45.6 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 24/244 (9%), Positives = 69/244 (28%), Gaps = 10/244 (4%)
Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
+K+KE ++ + D + + L + + + + + L
Sbjct: 112 QKIKELGIKIGDDEIRQAIDDVKRQNNNMTQSQLEAALKSQGYTFAQYEVQLREQLERLR 171
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+ SK + Y + K + V + + + ++
Sbjct: 172 --LVSMEVRSKIYVSEKEAEEYYQSHLSSYAEEETFKASHIFIKVDEKAPADQIQQAMNK 229
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLL-TTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
L ++GK+F + + + + + D + V
Sbjct: 230 ALKVLFEA--RQGKDFAQLAREYSDDAAAKKDGGSLGTFKRGEMLADLEKAILPLKPGEV 287
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYSV 616
+ + K+ G V+ + + ++ + S + L+++ S+
Sbjct: 288 GEL-VSTPSGLHIVKLDERSSGKVKPFETVKADISDLLYRQKQDSRFTSWMKELRTKASI 346
Query: 617 TVHD 620
+ D
Sbjct: 347 EIKD 350
>gi|238758995|ref|ZP_04620166.1| Chaperone surA [Yersinia aldovae ATCC 35236]
gi|238702806|gb|EEP95352.1| Chaperone surA [Yersinia aldovae ATCC 35236]
Length = 434
Score = 70.3 bits (169), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 9/154 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + ++ + V V S + +Q+ G V +
Sbjct: 7 LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLN-AQQSGQQVPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ Q + +G+ + IA N+ + SR
Sbjct: 64 --ATLRHQILERLIMDNIQLQMAKKMGITISDEALDKAIADIAA----QNRMTAAQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
LA +G+N Y + K + ++V V
Sbjct: 118 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRIT 151
Score = 38.3 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 28/371 (7%), Positives = 90/371 (24%), Gaps = 9/371 (2%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++ + K+ K +A + + + +
Sbjct: 58 QQVPDDATLRHQILERLIMDNIQLQMAKKMGITISDEALDKAIADIAAQNRMTAAQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ D + + + V ++ + +
Sbjct: 118 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQVGNQTSGDAELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I ++ + E+ + + ++I D +
Sbjct: 178 HILIPLPENPSQQQVDQAEDLAKRLVTEIKGGADFGKLAI-ANSADSQALKGGQMGWGKL 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWK 491
L + + G + +++ + E +
Sbjct: 237 QELPSLFAERLQSANKGDVVGPIRSGVG-FHILKVNDIRGADKTVSVTEVHARHILLKPS 295
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGIS 550
V T ++ +K + +F I K + + Q + +
Sbjct: 296 PVMTDDQARAKLTAAAADIKSGKSSFATIAKEISQDPGSAMQGGDLGWASPDIYDPAFRD 355
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
V + P+ + + + ++ + +KDK L + + +
Sbjct: 356 AVMKLSKGEI-SAPVHSSFGWHLIQLVDTRQVDKTDAAQKDKAYRMLFSRKFAEEAQTWM 414
Query: 608 AYLKSQYSVTV 618
++ V +
Sbjct: 415 QEQRAAAYVKI 425
>gi|261855875|ref|YP_003263158.1| SurA domain protein [Halothiobacillus neapolitanus c2]
gi|261836344|gb|ACX96111.1| SurA domain protein [Halothiobacillus neapolitanus c2]
Length = 465
Score = 70.3 bits (169), Expect = 9e-10, Method: Composition-based stats.
Identities = 55/471 (11%), Positives = 135/471 (28%), Gaps = 74/471 (15%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + + +Q I+ + + ++ L++++LD +++
Sbjct: 53 DRIVAVVNQSVITQRQLNDRIQQVSSQINIQALSPSDFKQ-----LEERVLDRMITEEVE 107
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG+ D R+ + + N S D + R+G + Y D+ K +
Sbjct: 108 LQRAKQIGITVDEQRLDSALDGI----AQRNGMSLDQLQQAVTRQGEDWNAYRDNIRKQI 163
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
++ V D ++ + ++ ++
Sbjct: 164 IIDELKRREV---------------------------------YERVDITDRDIDEYLKQ 190
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
Y ++ IL V E ++ N + +A
Sbjct: 191 YMGADTDTTEYHLAQILISVPENATPSQVENAKKRA------------------------ 226
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
+ A ++ + K + + LG IP L K G+ +
Sbjct: 227 -DDVMAALKAGQDFAKVSAERSDAPDATKGGDLGWRDMSRIPG--LFTDTVKSLKTGEIS 283
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
+I G+ I + + + Q + + + + + E+
Sbjct: 284 GLIRSPNGFHILKLLGERKRTAGNTQLTEYEAEHVLIQVNGKRDATAAKAQAEKLRQEII 343
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
S D D G P F + P+ K V
Sbjct: 344 SGKATFAEIASKYSD----DKGSAQQGGLLGWVNPSDMVPEFATMLEQTPVGKISPVFQT 399
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
+ ++++ ++ + +++ ++ + E++ + +L E
Sbjct: 400 QFGFHFLEVLKTREVQVPT-DKLRAQARQAIGQRRADEDLVNYIRRLRAEA 449
>gi|120602308|ref|YP_966708.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
vulgaris DP4]
gi|120562537|gb|ABM28281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfovibrio
vulgaris DP4]
Length = 343
Score = 70.3 bits (169), Expect = 9e-10, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 51/135 (37%), Gaps = 6/135 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + + + E+ ++E R + + +LD+++S +
Sbjct: 59 NRIAAVVNGEMITYFDVQAQAAPEILRAGLDPVRDADAEPVRR--ITRNVLDSMISDILI 116
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + V E + + ++ + + F +LA++G++ + + +
Sbjct: 117 SQEAERLKITVQDSEVDNEYRKI----VQRSQLAPEQFERQLAQQGLSADLMRERIRRGI 172
Query: 160 SRTDVVGMFVGGMRP 174
R ++G+ +
Sbjct: 173 LRHRLLGLMIARKVV 187
Score = 41.0 bits (93), Expect = 0.66, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 5/123 (4%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
A+ L + F D+ N D + +
Sbjct: 220 RDDADALAAQVKSGAMTFADLAARHSIGPNPQNGGVIGDLLWSDLSMEWRDTLSELKPGD 279
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN----KDLLDSVIAYLKSQYS 615
V + G V ++ S G Q D + ++ ++ L I L+S+
Sbjct: 280 VSRVFLVEGRK-AVLQLVASNEGKGQALDDVAEEIENILREPKMQERLQEYIGQLRSRAV 338
Query: 616 VTV 618
+ +
Sbjct: 339 IDI 341
>gi|118581988|ref|YP_903238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
propionicus DSM 2379]
gi|118504698|gb|ABL01181.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
propionicus DSM 2379]
Length = 321
Score = 70.3 bits (169), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 54/168 (32%), Gaps = 8/168 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
++ V + + + + + +K + + + LD LV +
Sbjct: 22 NAVAAIVNDEIITLYEVNHEAQPLIREGEKKG----SMNDEERKRIRRAALDGLVEKKLV 77
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+Q I+++ ++ + I + N + V LA +G++ +Y + L
Sbjct: 78 EQKIKELNIKIGDDEINQAIDDVK----RQNNLDQEGLVKALASQGLSYDQYKSQLREQL 133
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
R +V M V +A + RH+ +
Sbjct: 134 ERLRLVSMEVRSRIQVGESEVRAYYNENLATYSEDETFRARHIFFKTN 181
>gi|253681295|ref|ZP_04862093.1| foldase protein PrsA [Clostridium botulinum D str. 1873]
gi|253562533|gb|EES91984.1| foldase protein PrsA [Clostridium botulinum D str. 1873]
Length = 348
Score = 70.3 bits (169), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/206 (13%), Positives = 66/206 (32%), Gaps = 6/206 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW--KQEL 64
K R VA L + + + + + + V VG +K+ + + K+ L
Sbjct: 2 KNIRKLVATAVLCIFTMSAVGCSMIEKTPEAIKKTVVAKVGDRKITKGELDSHFGVKRYL 61
Query: 65 GMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEI-A 120
Q+ G + + + + S L Q E + L + + EI
Sbjct: 62 DQFKQQYGENFEQNPQIKEQVKQIKIAVAKQIASQEALKQEAERLKLVPNDQELKKEIDK 121
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++ F + + + L G+ + ++ + + + ++ + ++
Sbjct: 122 KTEEFKKEQHIKDNKGLDEALKMSGLQKSDFENIIKDNIIIEKLQNELTKNIKVDDKEIE 181
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIA 206
+ +N D HV I
Sbjct: 182 KYYNKNKDNYPKDPKNPTKIHVAHII 207
>gi|122070657|sp|Q48NT5|SURA_PSE14 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
Length = 428
Score = 70.3 bits (169), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V A L ++LD L+
Sbjct: 19 ESVVAIVDNDVIMKSQMDQRVREVQQTIAKR-GSGVPPAEA----LQPQVLDRLILENLQ 73
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ + + + +
Sbjct: 74 LQMGERSGIRVSDNELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYNDAREQVRREM 129
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 130 IISRVRQRRVA 140
>gi|207727966|ref|YP_002256360.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia
solanacearum MolK2]
gi|206591209|emb|CAQ56821.1| peptidyl-prolyl cis-trans isomerase (rotamase c) protein [Ralstonia
solanacearum MolK2]
Length = 473
Score = 70.3 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 9/141 (6%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S A S V V + ++ + + + L ++L
Sbjct: 57 SGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQAQNRPMPARAD-----LLGEVL 111
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ L+ Q ++ G+ V + + N S S+LA+ G+ +
Sbjct: 112 EQLILERVQAQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLAQSGLAYDK 167
Query: 151 YIDHYTKMLSRTDVVGMFVGG 171
Y + + + + V
Sbjct: 168 YREDLRQEILLARLRDREVDS 188
>gi|222056791|ref|YP_002539153.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
FRC-32]
gi|221566080|gb|ACM22052.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
FRC-32]
Length = 320
Score = 70.3 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/373 (13%), Positives = 113/373 (30%), Gaps = 67/373 (17%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
++ F +++ A ++ V + Q + + +K +
Sbjct: 4 FLLYFAVSVLFICPAAAKGELITAVAAIVNDDVITTLEVQKETDQIIKEMEKKG----PA 59
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
E L K LD L+ ++Q I+++ ++ + I K N + +
Sbjct: 60 ETPDKAALRKIALDRLIDKKLVEQKIKELDIKVPEEELRQSIEDVK----KQNNLTQEAL 115
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
V+ LA +G++ ++Y + L R ++ V
Sbjct: 116 VAALAGQGLSFEQYKTQLREQLERLRLMSQEVRS-------------------------- 149
Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
+ +++E + Y E+ R +I F V + + E + A
Sbjct: 150 -------KIQVGEREIREYYEANHNRYGEEEFFRARHIFFKVGKDAPESEAAKVMTTATQ 202
Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
+ + Q ++ LG+F K
Sbjct: 203 VLQEARSGKDFAELARQFS------------------------DDPAAKKDGGDLGTFKK 238
Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
+ ++ S K G+ + + + G+ I + F+EVK +I + +
Sbjct: 239 GDMIGE--IEAAVSGMKPGEVSDPVKTAAGFHIIKLEERSKGKPRPFEEVKAEIEDLLYK 296
Query: 378 TKASEKVKEDYKR 390
K+ E+ +
Sbjct: 297 KKSEERFNQWVND 309
Score = 44.1 bits (101), Expect = 0.071, Method: Composition-based stats.
Identities = 31/285 (10%), Positives = 91/285 (31%), Gaps = 8/285 (2%)
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
T + +I + P+ T ++K +++ K E+ ++ L
Sbjct: 38 TTLEVQKETDQIIKEMEKKGPAETPDKAALRKIALDRLIDKKLVEQKIKELDIKVPEEEL 97
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
S++++ ++ + L + + + + L + + +
Sbjct: 98 RQSIEDVKKQNNLTQEALVAALAGQGLSFEQYKTQLREQLERLRLMSQEVRSKIQVGERE 157
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ + Y + + V KD + A+ +++ VL+ ++ GK+F
Sbjct: 158 IRE--YYEANHNRYGEEEFFRARHIFFKVGKDAPESEAAKVMTTATQ--VLQEARSGKDF 213
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
++ + + K I SG P++ + + K+
Sbjct: 214 AELARQFSDDPAAKKDGGDLGTFKKGDMIGEIEAAVSGMKPGEVSDPVKTAAGFHIIKLE 273
Query: 578 NSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G + K + L + +++ + + L+ ++ +
Sbjct: 274 ERSKGKPRPFEEVKAEIEDLLYKKKSEERFNQWVNDLRKGAAIEI 318
>gi|153952806|ref|YP_001393571.1| peptidylprolyl isomerase [Clostridium kluyveri DSM 555]
gi|219853471|ref|YP_002470593.1| hypothetical protein CKR_0128 [Clostridium kluyveri NBRC 12016]
gi|189037913|sp|A5N4J2|PRSA_CLOK5 RecName: Full=Foldase protein prsA; Flags: Precursor
gi|254783411|sp|B9DY54|PRSA_CLOK1 RecName: Full=Foldase protein prsA; Flags: Precursor
gi|146345687|gb|EDK32223.1| PrsA [Clostridium kluyveri DSM 555]
gi|219567195|dbj|BAH05179.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 341
Score = 70.3 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 70/210 (33%), Gaps = 10/210 (4%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVS----GSSTVVSVGRQKVPFSSFINSWK--QELGM 66
+ ++ + L F+ + + STV V +K+ S Q +
Sbjct: 4 IGRLAVTALIAVFIFSVTGCNMIEKTPEAIAKSTVAEVNGEKITRSDLDKDPNTIQLITQ 63
Query: 67 ISQKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA-RS 122
+ Q+ G + ++ILD+L++ + Q +++ L D ++ ++ +
Sbjct: 64 VKQQYGENYKENEDAVNTIKTQKEQILDDLITNKVVAQKAKELKLLPDETKLKSDMETQI 123
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
++ + F + L +G E+ + + L + + + + D+
Sbjct: 124 AQLKKQNFNDDAEQFNTALKAQGFTEESFKAMFLSQLRTQQTLEKVTESISKNIKITDKE 183
Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
Y+ Y N+ A
Sbjct: 184 IEDYYNTNKSKYTEQPNKMHLAHILVKTED 213
>gi|28867781|ref|NP_790400.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
tomato str. DC3000]
gi|81732691|sp|Q88A44|SURA_PSESM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|28851016|gb|AAO54095.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 428
Score = 70.3 bits (169), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ V + L ++LD L+
Sbjct: 19 DSVVAIVDNDVIMKSQMDQRVREVQQTIAKRGSGVPPAAD-----LQPQVLDRLILENLQ 73
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ ++ + + +
Sbjct: 74 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 129
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 130 IISRVRQRRVA 140
>gi|229592952|ref|YP_002875071.1| putative chaperone [Pseudomonas fluorescens SBW25]
gi|229364818|emb|CAY52844.1| putative chaperone [Pseudomonas fluorescens SBW25]
Length = 444
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 9/151 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ L+ S V V + S K+ I+++ G V
Sbjct: 12 LVLGALLLGTASAHAAVQQLDKVVAIVDNDVIMQSQLDQRVKEVQQTIAKRGGGVPP--- 68
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
+ LD+++L+ L+ Q + G+ + + + N S D F +
Sbjct: 69 --TSVLDQQVLERLIVENLQLQIGDRSGIRISDEELNQAVGTI----AQRNNMSIDQFRA 122
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA +G++ ++ D + + + V V
Sbjct: 123 ALAHDGLSYEDARDQIRREMIISRVRQRRVA 153
>gi|270263924|ref|ZP_06192192.1| chaperone SurA, precursor [Serratia odorifera 4Rx13]
gi|270042117|gb|EFA15213.1| chaperone SurA, precursor [Serratia odorifera 4Rx13]
Length = 432
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 9/150 (6%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + ++ + V V S + + +Q+ G + +
Sbjct: 7 LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLESDVNSLLQSVKLN-AQQAGQQLPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ Q + +G+ + I NK S D SR
Sbjct: 64 --ATLRHQILERLIMDNIQLQMAKKMGIAVSDADLDKAIGNIAA----QNKMSIDQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA EG+N Y K + ++V V
Sbjct: 118 LAYEGLNYNTYRSQIRKEMLISEVRNNEVR 147
Score = 44.1 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 21/205 (10%), Positives = 52/205 (25%), Gaps = 7/205 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G + LF + +++ + E
Sbjct: 229 GNMGWGKLQEIPTLFAERLASAKKGDVVGPIRSGVGFHILKVNDIRGANQSVSVTEVHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V T ++ +K + F D K L + Q +
Sbjct: 289 HILLKPSVVLTDDQARAKLQAVAEAIKSGNAKFADEAKQLSQDPGSALQGGDLGWASPDI 348
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + V P+ + + + ++ + +KD+ L
Sbjct: 349 YDPAFRDALMKLNKGEV-SKPVHSSFGWHLIQLLDTRQVDKTDAAQKDRAYRMLFNRKFA 407
Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQR 625
+ + + ++Q V + D Q+
Sbjct: 408 EEAQTWMQEQRAQAYVKILDGNAQQ 432
>gi|196228020|ref|ZP_03126887.1| hypothetical protein CfE428DRAFT_0051 [Chthoniobacter flavus
Ellin428]
gi|196227423|gb|EDY21926.1| hypothetical protein CfE428DRAFT_0051 [Chthoniobacter flavus
Ellin428]
Length = 507
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 10/236 (4%)
Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
+ + D+ ++ +++ + V + + K A+ ++ +
Sbjct: 269 QKKAEDFSVAMTDKNAKFDEVAAKYNEKVQESPEFPASKPPEALESSSEIGAAAYKLTKD 328
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL--- 506
+ P G Y +Q+ P R EE ++ K + E ++ KA +
Sbjct: 329 QPNSDVLETPRG-YYVLQLANITPPRPLAYEEAKANLADTLKHERAQEALNLKATDVRNK 387
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY-DGISQVFSGPVEMVKCFPI 565
+ E K GK F + LG + + + + + V
Sbjct: 388 IEEAIKGGKTFAAAAQELGVKAEDFPAFSPKEPKMDQPNAMEVMQATGDLHQGQVSPVVP 447
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK----DLLDSVIAYLKSQYSVT 617
+ S +V+ V+ + + L + + L + ++ +
Sbjct: 448 SSDGSLIVY-VSKRLPIDEAKYKADKTQLADSLAEFQQTALFQQWLKLRRAAAQLE 502
Score = 66.4 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 60/510 (11%), Positives = 162/510 (31%), Gaps = 44/510 (8%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK--- 61
RK + + + + + + F + SGS V + + + S +
Sbjct: 6 FRKYQQAIMISVTV-LTIISFALLYGHTDALDRSGSGKVAVIYGKNISLPSAQRGVRKGD 64
Query: 62 --QELGMISQKIGFVVNSERARSVGLDKKILDN--LVSGATLDQFIEDIGLEADHGRVWG 117
++L + + +++ ++++ + L +++G+ A ++
Sbjct: 65 LCRQLAQMEAYQPKHPMMDLYQALAVNRQEARENFFFNSLVLKHEADELGVSATEDEIFA 124
Query: 118 EIARSPLFHGKDNKFSHDVFVSR----LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
P F + + ++ L G + + + V + +
Sbjct: 125 ATQALPAFQT-NGAYDSQKYIMIAQNVLPSMGFTTDDLSELIGDSIRFQKVKALLGTTVA 183
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
PS+ + + + + A + + +E+ K + E +++
Sbjct: 184 PSDSEIRDSFTQLNQKTEASVVRFKLDDFLATTQVPEEDVKKLYEERKSTLKTDETRKVR 243
Query: 234 YILFDVHEKEKKIEIS-NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
++ F + +K + + + +K E + + K ++ +S +
Sbjct: 244 FVAFTLPTTDKPLTGPARVKALTDLQKKAEDFSVAMTDKNAKFDEVAAKYNEKVQESPEF 303
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
A E + + + L K + V+ GY +
Sbjct: 304 PASKPPEALESSS------------------EIGAAAYKLTKDQPNSDVLETPRGYYVLQ 345
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASE----KVKEDYKRLEEFLALGTSMDEISRRE 408
++NI P ++++E K ++A+ ++ +A E K + ++EE + G + ++
Sbjct: 346 LANITPPRPLAYEEAKANLADTLKHERAQEALNLKATDVRNKIEEAIKGGKTFAAAAQEL 405
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ + D P KE + + G V DGS + +
Sbjct: 406 GVKAEDFPAFS-------PKEPKMDQPNAMEVMQATGDLHQGQVSPVVPSSDGSLIVY-V 457
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
+ +P + K + T + +
Sbjct: 458 SKRLPIDEAKYKADKTQLADSLAEFQQTAL 487
>gi|330827221|ref|YP_004390524.1| chaperone surA [Alicycliphilus denitrificans K601]
gi|329312593|gb|AEB87008.1| Chaperone surA [Alicycliphilus denitrificans K601]
Length = 471
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + + + ++ +S + G + L K++L+ L+ Q
Sbjct: 69 IVAVVNSEPITNNEVRQRAERVAQQLSGQ-GAAMPPHEV----LVKEVLERLILEKIQVQ 123
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
++ G++ D V + S D RLA +GI+++ + + L
Sbjct: 124 LAKEGGIKVDDYAVNQAEQNVARQNDV----SVDEMHRRLAADGISKERFREELRNQLLA 179
Query: 162 TDVVGMFVGGM 172
V V
Sbjct: 180 LRVRERDVESR 190
>gi|46849509|dbj|BAD17840.1| unknown protein [Hydrogenobacter thermophilus]
Length = 174
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 62/166 (37%), Gaps = 11/166 (6%)
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
Y+ V + PA R EEV ++ + A + KA ++ ++
Sbjct: 15 DEYLIVYLYRVEPAGIRSFEEVKEQIRSALIDKRKASLLRDKAQEIYKRLTEG------- 67
Query: 521 GKNLGASLLTTN--QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
K++ LT ++++ + K +S + S ++ + + G V
Sbjct: 68 -KDVSVKYLTFEDTPVDQIMSIAKVKEGQVVSFILS-KQKVFGPYELSQGYGVFVITDRK 125
Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
K +E K + M + ++ +I +L + +++ +I+
Sbjct: 126 KKPADEEEIKKLTQDILNMKSDATVNYLIEHLIRSAKIKINEEVIK 171
>gi|116748015|ref|YP_844702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
fumaroxidans MPOB]
gi|116697079|gb|ABK16267.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobacter
fumaroxidans MPOB]
Length = 353
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 53/170 (31%), Gaps = 8/170 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + + + K+ + G + A+ + KK+LD LV
Sbjct: 57 KGEKVAVVNGTVITRAEYESETKRFERQM-AMSGQA--PDGAQVAEMKKKVLDGLVGREV 113
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
L Q +G++ D V EIA + D F L + E+ +T+
Sbjct: 114 LKQQAAKLGVKVDPAEVDKEIATLKQRFP-----NEDEFKKALKNLNLTEESLKAQFTQD 168
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
L ++ V + ++ HV DP
Sbjct: 169 LGIRKMIDEQVASKITITPEETKKFYDGNPELFKTPEMVRASHVLIKVDP 218
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 8/154 (5%)
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLGASL 528
P + E V K + +KA + + K G++F + K +
Sbjct: 197 NPELFKTPEMVRASHVLIKVDPKAGDADKAKAKERITAAQKKVQAGEDFAKVAKEVSECP 256
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + F+ V V +E Y V KVT+ K V + D
Sbjct: 257 SAAKGGDLDFFQRGQMVGPFEQAAFALKVGSVSDI-VETQFGYHVIKVTDKKEAGVMKYD 315
Query: 589 KFISYLTQMMNKDLLDS----VIAYLKSQYSVTV 618
+ + Q + +D ++ I LK+Q + +
Sbjct: 316 EIKDRIAQHLKQDRVNQQLAKYIEELKAQAKIEI 349
>gi|319765026|ref|YP_004128963.1| sura domain protein [Alicycliphilus denitrificans BC]
gi|317119587|gb|ADV02076.1| SurA domain protein [Alicycliphilus denitrificans BC]
Length = 471
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + + + ++ +S + G + L K++L+ L+ Q
Sbjct: 69 IVAVVNSEPITNNEVRQRAERVAQQLSGQ-GAAMPPHEV----LVKEVLERLILEKIQVQ 123
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
++ G++ D V + S D RLA +GI+++ + + L
Sbjct: 124 LAKEGGIKVDDYAVNQAEQNVARQNDV----SVDEMHRRLAADGISKERFREELRNQLLA 179
Query: 162 TDVVGMFVGGM 172
V V
Sbjct: 180 LRVRERDVESR 190
>gi|300692473|ref|YP_003753468.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
maturation of outer membrane proteins [Ralstonia
solanacearum PSI07]
gi|299079533|emb|CBJ52211.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
maturation of outer membrane proteins [Ralstonia
solanacearum PSI07]
Length = 475
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/181 (9%), Positives = 44/181 (24%), Gaps = 9/181 (4%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S A S V V + ++ + + + L ++L
Sbjct: 58 SGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQSQNRPMPARAD-----LLGEVL 112
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ L+ Q ++ G+ V + + N S S+L + G+ +
Sbjct: 113 EQLILERVQAQTAKESGIRVSDADVDRAVESV----AQRNNLSVSQLKSKLVQSGLAYDK 168
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
Y + + + + V + + +
Sbjct: 169 YREDLRQEILLARLRDREVDSKVQVFDGEIDNFLAQQGGAAASGGSQEYNVAQILVPVAE 228
Query: 211 A 211
Sbjct: 229 D 229
>gi|160872391|ref|ZP_02062523.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Rickettsiella grylli]
gi|159121190|gb|EDP46528.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Rickettsiella grylli]
Length = 431
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/466 (10%), Positives = 109/466 (23%), Gaps = 74/466 (15%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + N + + + N + K++L+ ++ Q
Sbjct: 34 AVVNHHAITAQQLDNQMEVKRQQWLSE-----NKSIPNTTTFRKQVLNEMIDQELQLQLA 88
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
IGL+ + + I + N + + +L + + Y + L
Sbjct: 89 ATIGLKINDDTLDKTILSI----AQHNGLTLEQLREKLQQANMPFARYREQIRHQLLINR 144
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
+ V A ++ +
Sbjct: 145 LQQNEVA---------------------------------AKITVTDQEIKDMLTHLPKI 171
Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
+ +L +I+ + A K K + +E
Sbjct: 172 ISKKAVYHVEDLLIPFSNNPSSTDIARTKETALSLLQKAKQGTSFSALIEH--------- 222
Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
A LS LG +PD + + K G+ I
Sbjct: 223 ----------------ANASTIPLSGGDLGWRPLNDLPD--IFQTSVQTLKPGEVAGPIR 264
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
G+ + + ++ + + + T ++ RL E A +
Sbjct: 265 ADNGFHLIRLLELRGIAPAPHDVISTHARHILIKTSPLLNNQQAENRLREIRADILHGGD 324
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ K S D G +P F K +++ +
Sbjct: 325 FASLAKKYSQ-----DPGSSYKGGDLGWTLPGFFDPTFEEHLKKLAVNQISLPFQTQYGW 379
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
VQ+ + + K + + + QL +
Sbjct: 380 HIVQVLGRAKKLQTAQNTLHKQAAQLVYQKKFQKALKNWLRQLRNQ 425
>gi|149377958|ref|ZP_01895684.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
DG893]
gi|149357732|gb|EDM46228.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter algicola
DG893]
Length = 429
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 9/133 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S G + + G + L++++L+ L+S +
Sbjct: 21 DQVVAVVNDDVILQSELEARINTITGRLRAQ-GTGLPPRDI----LEERVLEQLISESIQ 75
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G+ + +A + N + F +L +EG+ +E + +
Sbjct: 76 LQMADRAGMRISDNELNETLASI----AQRNNMTLAQFEQQLVQEGVTYREAREQIRNEM 131
Query: 160 SRTDVVGMFVGGM 172
+ V VG
Sbjct: 132 ITSRVQQRQVGNR 144
>gi|238797487|ref|ZP_04640985.1| Chaperone surA [Yersinia mollaretii ATCC 43969]
gi|238718628|gb|EEQ10446.1| Chaperone surA [Yersinia mollaretii ATCC 43969]
Length = 434
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 9/154 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + ++ + V V S + +Q+ G V +
Sbjct: 7 LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLN-AQQAGQQVPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ Q + +G+ + IA N+ + SR
Sbjct: 64 --ATLRHQILERLIMDNIQLQMAKKMGITVSDEALDKAIADIAA----QNRMTTAQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
LA +G+N Y + K + ++V V
Sbjct: 118 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRIT 151
Score = 37.1 bits (83), Expect = 8.5, Method: Composition-based stats.
Identities = 17/198 (8%), Positives = 51/198 (25%), Gaps = 7/198 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G+ + LF + + +++ + E
Sbjct: 229 GQMGWGKLQELPSLFAERLQSANKGDVVGPIRSGVGFHILKVNDIRGADKTVSVTEVHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V T ++ +K + F +I K + + Q +
Sbjct: 289 HILLKPSPVMTDDQARAKLTAAAADIKSGKATFANIAKEISQDPGSAVQGGDLGWASPDI 348
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + + P+ + + + +V + +KD+ L
Sbjct: 349 YDPAFRDALMKLQKGEI-SAPVHSSFGWHLIQVVDTRQVDKTDAAQKDRAYRMLFSRKFA 407
Query: 601 DLLDSVIAYLKSQYSVTV 618
+ + + ++ V +
Sbjct: 408 EEAQTWMQEQRAAAYVKI 425
>gi|94309382|ref|YP_582592.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
metallidurans CH34]
gi|121956449|sp|Q1LRA3|SURA_RALME RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|93353234|gb|ABF07323.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Cupriavidus
metallidurans CH34]
Length = 493
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/185 (12%), Positives = 49/185 (26%), Gaps = 10/185 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + ++ + + V L ++L+ LV
Sbjct: 82 DEVVAVVNNSVITRRELLDRADEIESQLRAAKREVPP-----RPDLLGEVLERLVMERVQ 136
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q ++ G++ V I + NK S SR+ G++ +Y D K +
Sbjct: 137 TQAAQEAGIKVTDQEVDRAIESV----AQQNKMSATELRSRVEASGMSWTKYRDELRKQV 192
Query: 160 SRTDVVGMFVGGM-RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ V + + +D ++ +
Sbjct: 193 QVIRLREREVDSKVQVYDGEIDNYLAARNGGQAAASGPTEFNVAQILVRVPEDASDAQKA 252
Query: 219 KYKDN 223
+ K
Sbjct: 253 QLKTK 257
>gi|303327130|ref|ZP_07357572.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
sp. 3_1_syn3]
gi|302863118|gb|EFL86050.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
sp. 3_1_syn3]
Length = 312
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/298 (15%), Positives = 98/298 (32%), Gaps = 14/298 (4%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K F+++L + F G+ + V Q + + ELG
Sbjct: 3 KTFILLLAIWF--CGVCGVQAAQLN-KVAAVVNGQVITMFDLQKTALPELGRARLNPNNP 59
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
++ + +K+LD ++ L Q + + + V E+ + K +
Sbjct: 60 AQAKEVEK--VFRKVLDMMIMDILLGQEAKRLKISVSPSEVDNELVKMM----KARNLTK 113
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
F ++LA++ I+ E ++ K L R ++GM VG +A ++ D
Sbjct: 114 QQFEAQLAQQKISIDEIRQNFEKSLLRQKIMGMEVGRKVVVTPAEIKAYYEAHKDNLYDR 173
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
L+ + + + + + K + ++ + K+K ++ E
Sbjct: 174 SGLHMGVLVYAPNVNAKSIAAQIKSGKLS-----FEEAAAKYSIAPNKDKGGDMGPVEWD 228
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
+ + + + V + ++A QL EQ D L
Sbjct: 229 RLNPEWEGRLIKMKPGDVTDIFDLQGRKAQVHLFRPGGDNAEKQLTLEQATPQIDAIL 286
>gi|320109145|ref|YP_004184735.1| SurA domain-containing protein [Terriglobus saanensis SP1PR4]
gi|319927666|gb|ADV84741.1| SurA domain protein [Terriglobus saanensis SP1PR4]
Length = 360
Score = 69.9 bits (168), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/304 (13%), Positives = 97/304 (31%), Gaps = 15/304 (4%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L+ + + G G+ V SV + +P + ++ ++ + VN
Sbjct: 16 LLIAGTLSLALTGCH----PTHGADVVASVNGKAIPRADLDRFYQSQMAQNQNQ--QPVN 69
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
++A S L IL +L+ + Q + L A + V ++ ++ +
Sbjct: 70 EDQADSARLT--ILRSLIDEEIIQQRAAKMNLTASNEDVDAKVTEMKA------PYTEEQ 121
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM-RPSNLLLDQAKRFYFENRSVDYI 195
F RL + + L+ ++ + ++ + + ++
Sbjct: 122 FNERLKASNHTLDDMKREIRRSLTFDKLLNKEINSKINITDGDVSSYYAAHKSEYNLMET 181
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+ V + PS + K ++ A + + D E I ++ E
Sbjct: 182 QYHLGQVLVTSFPSPQAVNLQSSKATNDAEAKKKIQTLKNRIDSGEDFSAIAMNFSENPQ 241
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
+ + F E + ++ +A Q F Q A K + + L
Sbjct: 242 TAQNGGDMGFISESQLHTDILSYTAVTKLKAGQVTDILPVFDQPASPSKKVVGYVILKLI 301
Query: 316 SKEY 319
S++
Sbjct: 302 SRDA 305
Score = 42.2 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 28/292 (9%), Positives = 71/292 (24%), Gaps = 20/292 (6%)
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
N + + ++ I ++ +A++ +
Sbjct: 58 QMAQNQNQQPVNEDQADSARLTILRSLIDEEIIQQRAAKMNLTASNEDVDAKVTEMKAPY 117
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ K + + + + D A Y
Sbjct: 118 TEEQFNERLKASNHTLDDMKREIRRSLTFDKLLNKEINSKINITDG-DVSSYYAAHKSEY 176
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
++ + + + T + + K Q + G++F I N
Sbjct: 177 NLME-TQYHLGQVLVTSFPSPQAVNLQSSKATNDAEAKKKIQTLKNRIDSGEDFSAIAMN 235
Query: 524 LGASLLTTNQ------INRMDNENKFFGYDGISQVFS------GPVEMVKCFPIENGLSY 571
+ T I+ Y ++++ + PV P + + Y
Sbjct: 236 FSENPQTAQNGGDMGFISESQLHTDILSYTAVTKLKAGQVTDILPVFDQPASPSKKVVGY 295
Query: 572 VVFKVTNSKVG------PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V+ K+ + + L + L ++ L++Q V
Sbjct: 296 VILKLISRDAAGQRLLTDPAVQQNIRQQLHDARSTLLKNAYFEMLRNQSKVE 347
>gi|225023463|ref|ZP_03712655.1| hypothetical protein EIKCOROL_00321 [Eikenella corrodens ATCC
23834]
gi|224943812|gb|EEG25021.1| hypothetical protein EIKCOROL_00321 [Eikenella corrodens ATCC
23834]
Length = 317
Score = 69.5 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/195 (13%), Positives = 53/195 (27%), Gaps = 12/195 (6%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K ++ L + ++ A S + V V + + + + +
Sbjct: 3 MKTLVLALGMSLAFQ-VASANTVRSVDNIVAVVENEVITQRELDQAVAHTRSQMPR---- 57
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ L ++ L LV+ + L Q ++ V EIAR + S
Sbjct: 58 ---GTQVSEQELQRQTLMQLVNQSLLVQAGRRNNIQVPDAEVEAEIARIAASRRQ----S 110
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
F + AR GI++ + V G + A + +
Sbjct: 111 LAQFEAAQARFGIDKTALRRQVRDSMIAQRVQQGQTAGEAKVSEDEINAAIARARAQGIT 170
Query: 194 YIVLNNRHVPAIADP 208
+
Sbjct: 171 LPQATPKTQYHAQHI 185
>gi|157368971|ref|YP_001476960.1| peptidyl-prolyl cis-trans isomerase SurA [Serratia proteamaculans
568]
gi|157320735|gb|ABV39832.1| SurA domain [Serratia proteamaculans 568]
Length = 432
Score = 69.5 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 48/150 (32%), Gaps = 9/150 (6%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + ++ + V V S + +Q+ G + +
Sbjct: 7 LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLESDVSTLLQSVKLN-AQQAGQQLPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ Q + +G+ + I NK S D SR
Sbjct: 64 --KTLRHQILERLIMDNIQLQMAKKMGINVSDADLDKAIGNIAA----QNKMSIDQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA EG+N Y K + ++V V
Sbjct: 118 LAYEGLNYNTYRSQIRKEMLISEVRNNEVR 147
Score = 44.1 bits (101), Expect = 0.079, Method: Composition-based stats.
Identities = 21/205 (10%), Positives = 54/205 (26%), Gaps = 7/205 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G + LF + + +++ + E
Sbjct: 229 GNMGWGKLQEIPTLFAERLVNAKKGDVVGPIRSGVGFHILKVNDIRGANQSVSVTEVHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V T ++ +K ++ F D K L + Q +
Sbjct: 289 HILLKPSVVLTDDQARAKLQEVAEAIKSGRAKFADEAKQLSQDPGSALQGGDLGWASPDI 348
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + V P+ + + + ++ + +KD+ L
Sbjct: 349 YDPAFRDALMKLSKGEVSQ-PVHSSFGWHLIQLLDTRQVDKTDAAQKDRAYRMLFNRKFA 407
Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQR 625
+ + + ++Q V + D Q+
Sbjct: 408 EEAQTWMQEQRAQAYVKILDGNAQQ 432
>gi|113866541|ref|YP_725030.1| peptidyl-prolyl cis-trans isomerase (rotamase c)protein [Ralstonia
eutropha H16]
gi|113525317|emb|CAJ91662.1| Peptidyl-prolyl cis-trans isomerase (rotamase c)protein [Ralstonia
eutropha H16]
Length = 491
Score = 69.5 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 41/141 (29%), Gaps = 9/141 (6%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S V V + ++ + G + G V + L ++L
Sbjct: 71 GGQKRSQLVDEVVAVVNNSVITRRELLDRADEIEGQLRA-AGRPVPA----RADLLGEVL 125
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ LV Q ++ G+ + I + N+ + R+ G+ +
Sbjct: 126 ERLVMERVQTQAAQEAGIRVTDQEIDRAIESV----AQQNRLNATELRRRVEASGMTWTK 181
Query: 151 YIDHYTKMLSRTDVVGMFVGG 171
Y + K + + V
Sbjct: 182 YREELRKQVQVIRLREREVDS 202
>gi|237749066|ref|ZP_04579546.1| chaperone SurA [Oxalobacter formigenes OXCC13]
gi|229380428|gb|EEO30519.1| chaperone SurA [Oxalobacter formigenes OXCC13]
Length = 459
Score = 69.5 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 50/163 (30%), Gaps = 18/163 (11%)
Query: 20 VLFVPFLIWGLSDALFSVSG---------SSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
L + F ++ + L + S V + + Q+
Sbjct: 16 ALILAFGVFFSATVLAQDNQAQPSKQVVVDSIAAIVNSDVITKGELNERVTLVEAQLKQQ 75
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
N K++L++++ Q +D+GL D ++ I + N
Sbjct: 76 -----NIALPPRTEFQKQVLEHMIVERAQLQLAKDMGLRVDDTQLDRTI----ALMAEQN 126
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
S F + + G +++ + + ++ + + V
Sbjct: 127 HMSLAQFKRQTEQNGTPFEKFREKVREEITMSRLRDREVVNKI 169
>gi|328949546|ref|YP_004366881.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus
hydrothermalis DSM 14884]
gi|328449870|gb|AEB10771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinithermus
hydrothermalis DSM 14884]
Length = 611
Score = 69.5 bits (167), Expect = 1e-09, Method: Composition-based stats.
Identities = 58/614 (9%), Positives = 144/614 (23%), Gaps = 60/614 (9%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSS---TVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ +L V F + + + TV+ V + V + Q
Sbjct: 8 ITVIFGILAVAFALGTIFLFTPQGNPQQEGRTVLWVNGEPVRELEL--------ARLQQT 59
Query: 71 IGF-VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+N E A +D L+ ++ L Q + + +V ++ + G +
Sbjct: 60 TPLFALNPEGALKPLIDTYFLEQVILLKALAQDAAR--VRVSNSKVRQQVDQIRERFGLE 117
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+ + F + + Y D + RT + + L + + ++
Sbjct: 118 TRQDYSDF--------LQQIGYTDATLRDEIRTQLRINKRLEQIREQVELSEEEARFYFT 169
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
D +R + L + + Y S
Sbjct: 170 LHKDTYRTEDRIKARQIVVDDEALARELRERTLAGEEFAALAREY--------------S 215
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
+ E + +A A + +
Sbjct: 216 KVAAEQGGAVGAEAGSDEPQPVTRIVFPKPVADAAFALKEGGLTDVIEAGGRYHLVQVEA 275
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
G + ++ + ++ + +++ V+
Sbjct: 276 FLPGGDASFEEVADAVRADALAAKQRQAVEDYLEAVRARATVKFADLNLFQYVNPVVATV 335
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ A + LG + + + + + G+
Sbjct: 336 NGEEIPLRKVAELVFSDQQVPQLIQQGLGQLAVQFFFPASLDQLIARTLLLQEAEKSGQP 395
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
+ R++ D + V R + VK
Sbjct: 396 FVGTQEERARDVRLWKTLDVTVSEEEVRTF-----------YNENPQRFVIPASAQVKAV 444
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
K ++ + EG+ D+ + LG ++ +N
Sbjct: 445 TFQDK-------ESAETFRARLIEGEALEDLAQELGGEVVDYGTVNPRQLPPVLDQLIFF 497
Query: 550 SQV--FSGPVEMVKCFPIENGLSYVVFKVTNSKV----GPVQEKDKFISYLTQMMNKDLL 603
S+ P V ++ V V + K + +D+ + +
Sbjct: 498 SEATFAESPEGKVSELIELEDGTFQVALVNDQKPEVLRPFEEVQDEARALALAQKRNRIA 557
Query: 604 DSVIAYLKSQYSVT 617
+ + L+ +
Sbjct: 558 NEWLDELRENAQIE 571
>gi|309388964|gb|ADO76844.1| SurA domain protein [Halanaerobium praevalens DSM 2228]
Length = 425
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 43/427 (10%), Positives = 120/427 (28%), Gaps = 23/427 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS-------TVVSVGRQKVPF 53
M + +R SR + + ++ + G L + G + V ++
Sbjct: 1 MFDTLRNNSR-IIVYLVVIAFVISGGFMGYGAYLNNRGGGQAPNQGPAVIAEVNGMEISQ 59
Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL--EAD 111
+ + +Q+ S ++ ++L+ L+ + E+ + E
Sbjct: 60 QEYYSMLQQQAPNSSLSSSQIIP--------FRYQVLEALIERKLILAKAEEFDIQVEVS 111
Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
V + ++ + + + G + D + T+ + VG
Sbjct: 112 DSEVDENYNNILEQNEITDQELAETLAEQGSTIGELRENIKDSLQNTKTLTEAINQGVGK 171
Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
+ S+ + + + + + S L + K + +
Sbjct: 172 VEVSDQEIQKLYNQRYLKVETESKKTETENSKQKESDSEPKLEEVSSDLKTEIKNKKRNE 231
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKY----FSPEIRTVEQLVFPNQKEADEAF 287
+ + +I+I+ L+A ++ E Y ++ P A
Sbjct: 232 AINNWLKELKTDAQIKINQPVLKAYHDLENENYEQAVKQFSDFVEQENTDPIFYSYLAAA 291
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ + A E G + + K + ++ + + + + S
Sbjct: 292 YQGQNNYDRAETAYENGLNDFPDNKDLRFKFAEFLAEQDKNEAAVKQLDEISANVESSSD 351
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
++ + + +E + + R A + + +E D +
Sbjct: 352 FMTYYKL-FIMYSRLGAEEKAEISMEKAREISAQVEQNQQNSEIETDSTSPVDQDSETME 410
Query: 408 EKIVSID 414
E +
Sbjct: 411 EDLEIET 417
Score = 37.9 bits (85), Expect = 5.5, Method: Composition-based stats.
Identities = 20/205 (9%), Positives = 69/205 (33%), Gaps = 9/205 (4%)
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+ + + + + + P AL + + + +E + EV
Sbjct: 58 SQQEYYSMLQQQAPNSSLSSSQIIPFRYQVLEALIERKLILAKAEEFDIQVEVSDSEVDE 117
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF- 543
+ + + + +L +++G ++ +N+ SL T + N+
Sbjct: 118 NYNNILEQNEITD------QELAETLAEQGSTIGELRENIKDSLQNTKTLTEAINQGVGK 171
Query: 544 --FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
I ++++ V+ + K ++S+ + + + +
Sbjct: 172 VEVSDQEIQKLYNQRYLKVETESKKTETENSKQKESDSEPKLEEVSSDLKTEIKNKKRNE 231
Query: 602 LLDSVIAYLKSQYSVTVHDNLIQRY 626
+++ + LK+ + ++ +++ Y
Sbjct: 232 AINNWLKELKTDAQIKINQPVLKAY 256
>gi|298528166|ref|ZP_07015570.1| SurA domain protein [Desulfonatronospira thiodismutans ASO3-1]
gi|298511818|gb|EFI35720.1| SurA domain protein [Desulfonatronospira thiodismutans ASO3-1]
Length = 326
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/185 (10%), Positives = 58/185 (31%), Gaps = 6/185 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V V + + + LG+ + + + +L+ +++ +
Sbjct: 42 NRIVAHVNGESITLFDLEKRVEMFLGLFEDISLDELPP--VQQEETRRHVLEQMINDILM 99
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E +E + + I R ++N + + F L +G++ ++Y D +
Sbjct: 100 RQEAERYQIEVRNREIQEHIERVK----QNNNMNQEEFEQHLRAQGLSLEDYKDQIRDSM 155
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
R V+ + V + ++ + + L ++
Sbjct: 156 LRQRVMNIMVQRKTVVTSDRIKEYYEDNIQDFKKERKVHLKVLVVPRVEEAETLLDKIKE 215
Query: 220 YKDNY 224
+ +
Sbjct: 216 GEYQF 220
>gi|197116616|ref|YP_002137043.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter
bemidjiensis Bem]
gi|197085976|gb|ACH37247.1| peptidylprolyl cis-trans isomerase, PpiC-type, SurA family
[Geobacter bemidjiensis Bem]
Length = 317
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 46/168 (27%), Gaps = 11/168 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V + + + Q + G GL L+ LV +
Sbjct: 27 SGIAAIVNDEIITTQELDKEYLQIQKDADKVPGS-------DKSGLRGAALNRLVERKLI 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+Q I ++ + V I K N + + L +G+ +Y + +
Sbjct: 80 EQKIRELNINVSDEEVRLAIEDVK----KQNNLTQENLEQALVTQGLTLAQYRTQLKEQM 135
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
R ++ V + V + RH+ D
Sbjct: 136 ERLRLMSQEVRSKVQVGEREMREYYQANIAAYGGSEVYSARHIFFKVD 183
Score = 38.7 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 23/221 (10%), Positives = 65/221 (29%), Gaps = 8/221 (3%)
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
+++ ++ + +L + + + + L + + SK
Sbjct: 100 EDVKKQNNLTQENLEQALVTQGLTLAQYRTQLKEQMERLRLM--SQEVRSKVQVGEREMR 157
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
Y I + + V K + ++ ++AN+++ + + G++F +
Sbjct: 158 EYYQANIAAYGGSEVYSARHIFFKVDKKGGAGELSK-AETRANEVLAKA-RAGEDFAALA 215
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
K + K I S + + + K+ K
Sbjct: 216 KKYSDDPAAAKDGGDLGTFKKADMLPEIGDTVSAMKPGEVSSIVRSPAGLHIIKLEGKKQ 275
Query: 582 GP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
Q KD L + + + + L++ ++ +
Sbjct: 276 DAGRPFEQVKDSIEDTLYKKKSDERFAQWVKELRAGAAIEL 316
>gi|146281122|ref|YP_001171275.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas stutzeri
A1501]
gi|145569327|gb|ABP78433.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas stutzeri
A1501]
Length = 451
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S ++ I ++ G L +++L+ L++
Sbjct: 52 DRVVAIVDNDVIMQSQLNQRMREVQQTIEKR-GADAPPTDV----LQQQVLERLITENLQ 106
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + + + N S + F LAR+G++ + + + +
Sbjct: 107 LQIGERSGIRISDEELNQAMGTI----AQRNNMSLEQFREALARDGLSLETAREQIRREM 162
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 163 VISRVRQRRVA 173
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 17/242 (7%), Positives = 70/242 (28%), Gaps = 3/242 (1%)
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
A + + + ++ + + + G +
Sbjct: 208 AVPEGADSATIQAAERTAMDTYQQLQQGADFARLAVSRSGSENALEGGDMGWRKAAQLPP 267
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
F ++ + + ++ +++ + + +EV + ++E
Sbjct: 268 PFDTEVRELSVGEVTQPVRTPPGFIMLKLLDKRGGETQVRDEVHVRHILIKPSAIRSDEE 327
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+ Q + + G++F + ++ + ++ + +V +
Sbjct: 328 ARLLVQRLRDRINAGEDFAQLARSFSEDPGSALNGGDLNWIDPASLVPEFREVMANTPSG 387
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
++ + + +V + E+ + +S L + L + + ++ + V
Sbjct: 388 ELSQVFKSPYGWHILEVLGRRATDASEQFREQQALSLLRNRKYDEELQAWLRQIRDEAYV 447
Query: 617 TV 618
V
Sbjct: 448 EV 449
>gi|171914553|ref|ZP_02930023.1| hypothetical protein VspiD_25280 [Verrucomicrobium spinosum DSM
4136]
Length = 518
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/270 (15%), Positives = 92/270 (34%), Gaps = 15/270 (5%)
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
+ + + + +E +A G ++++++ K+ PL K
Sbjct: 257 EKLNAEDTVKARNEFAARVNDFGVAAIAPGAKLEDVAKTAKVELKTEPLFTMEAPPEALK 316
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
E + + +F D Y + + + + ++L EV V +
Sbjct: 317 EEPGL------VSEIFRIDPQNRPVSDPVEGAKGYYFFSVTQEEEPKQQELAEVKEKVAE 370
Query: 489 DWKTVKTAEEVSSKANQLVLEY---SKEGKNFRDIGKNLGASLLTTNQINRMDNE-NKFF 544
+ K E ++ A++ + K GK F + K + + + + ++
Sbjct: 371 QLTSQKAQELMTKAASEARKKLEESIKGGKTFDEAAKEANLTPQQLPEFSPSNPLMDRTN 430
Query: 545 GYDGISQVFSGPVEM-VKCFPIENGL--SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
G + ++ + P K P ENG+ YV+ K + K L MM D
Sbjct: 431 GREIAAETRTTPAGHFTKPLPTENGVLLVYVISKELRKRDDGASTKANIEKSLDGMMQGD 490
Query: 602 LLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ + + + + +QR L G +
Sbjct: 491 IFRAWFQRRRDEGK--ENAEPLQRRLLGIQ 518
Score = 61.0 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 72/537 (13%), Positives = 171/537 (31%), Gaps = 45/537 (8%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS---GSSTVVSVGRQKVPFSS-- 55
MLE +R+ ++ + ++ + F WG T ++ ++ F+
Sbjct: 1 MLEFLRRQTK-PIMISLAAIIIIAFTFWGGQTNRKEPGMHSAEDTAFTIYGKEHTFAEQS 59
Query: 56 -FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV------SGATLDQFIEDIGL 108
++ GM + + K + ++ + L + +E G+
Sbjct: 60 RLERLYRLAYGMGLSSPTGRGDFASTMGFVVQKYQAEGMIPVDFAFNLLVLREELEKNGV 119
Query: 109 EADHGRVWGEIARSPLFHGKDNKFS---HDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
+A + + P+F KD F + F + + G+ + + D + +
Sbjct: 120 QATNEEAREAFRKLPIFQNKDGNFDGNVAEQFQNNIGALGLRDTDVFDVLRDWIGFKRLH 179
Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
+ G +N + Q F+ I A P++ + +++E+ K+ ++
Sbjct: 180 EIVAGNAVLNNNVSKQLYASTFQTVKAASIPFITDDFKKDAKPTDEEIAKYYEEKKEAFK 239
Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
+ +SY+LF + EK + + E+ + I +L + E
Sbjct: 240 TAPKRAVSYVLFAKPDVEKLNAEDTVKARNEFAARVNDFGVAAIAPGAKLEDVAKTAKVE 299
Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
+ A ++ L +++ + + + G+
Sbjct: 300 LKTEPLFTMEAPPEALKEEPGL-----------------VSEIFRIDPQNRPVSDPVEGA 342
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK----EDYKRLEEFLALGTSM 401
GY V+ + EVK+ +A Q+ KA E + E K+LEE + G +
Sbjct: 343 KGYYFFSVTQEEEPKQQELAEVKEKVAEQLTSQKAQELMTKAASEARKKLEESIKGGKTF 402
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
DE ++ + LP + + I + P +
Sbjct: 403 DEAAKEANLTPQQLPEFSPSNPLMDRTNGREI--------AAETRTTPAGHFTKPLPTEN 454
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ V + + +++K + + + + E + + +
Sbjct: 455 GVLLVYVISKELRKRDDGASTKANIEKSLDGMMQGDIFRAWFQRRRDEGKENAEPLQ 511
>gi|301382733|ref|ZP_07231151.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
tomato Max13]
gi|302063472|ref|ZP_07255013.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
tomato K40]
Length = 440
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 47/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ G V + L ++LD L+
Sbjct: 31 DSVVAIVDNDVIMKSQMGQRVREVQQTIAKR-GSGVPP----AADLQPQVLDRLILENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ ++ + + +
Sbjct: 86 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
>gi|182420001|ref|ZP_02951235.1| foldase protein PrsA [Clostridium butyricum 5521]
gi|237669545|ref|ZP_04529525.1| prsA family protein [Clostridium butyricum E4 str. BoNT E BL5262]
gi|182376038|gb|EDT73625.1| foldase protein PrsA [Clostridium butyricum 5521]
gi|237654989|gb|EEP52549.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 343
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/282 (11%), Positives = 78/282 (27%), Gaps = 4/282 (1%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + +A + + L + + + + + +VG +K+ + K +
Sbjct: 2 KRIKKLIAAVSIFTLSISVMGCKMIEKTPEAIQKTVYATVGDEKITKADMDEEMKATIDQ 61
Query: 67 ISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ Q+ G + L + + L+ +V+ + + E +G+ + A
Sbjct: 62 LKQQYGDDYANNEKIKDQLKQMKVQYLNAMVNEKLMLKNAESVGVTPTDDELNEY-ADKQ 120
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ K L G E Y D+ K V + ++
Sbjct: 121 IEQLKQAYPDDAQLQQVLEANGFTEDSYKDYAKKQYKLQKVQEAITADVEVTDDDAKAYY 180
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+++ N H+ S+ + K N + + E
Sbjct: 181 DENKDSQYTVGAGANAAHILIAEKGSDGNIDFDASLAKANEVKAKLDAGADFAQLASEYG 240
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
N+ Y + +QL + +
Sbjct: 241 TDGTKDKGGDLGFVAYNQANYDQDFLAGFKQLSEGQISDPIK 282
>gi|307825062|ref|ZP_07655283.1| SurA domain protein [Methylobacter tundripaludum SV96]
gi|307733810|gb|EFO04666.1| SurA domain protein [Methylobacter tundripaludum SV96]
Length = 434
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/201 (13%), Positives = 60/201 (29%), Gaps = 16/201 (7%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
RT V + +LF FL+ + + + V +
Sbjct: 6 NIKRTIVVALLCNLLFGSFLV-------HAEVLDTIIAVVEEDVILERELQKEVAVIEQR 58
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
I Q+ + L K++L+ ++ Q E G+ + A
Sbjct: 59 I-QQSNAAIPPAYV----LRKQVLEKMIVDKLQRQLAEKAGITVSEEMLNSSAADI---- 109
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ N + F + L +GI+ + ++D+ + + G +GG +
Sbjct: 110 ARRNNMDIEQFRAELEGQGISYQSFLDNMRNEIIINQLRGREIGGRIKVTDREVEHYMET 169
Query: 187 FENRSVDYIVLNNRHVPAIAD 207
+ + + H+
Sbjct: 170 QDKIGEESTQYHLGHILIAVK 190
Score = 40.2 bits (91), Expect = 1.00, Method: Composition-based stats.
Identities = 16/213 (7%), Positives = 56/213 (26%), Gaps = 5/213 (2%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ D A G + LF + + V++ E
Sbjct: 223 ISDSDDANALKGGDLGWRTLSEVPTLFVNEIRQMKQGDVSEPIRSPSGFHIVKMLELKGT 282
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQ 533
+ + + + ++K + +G +F + + +
Sbjct: 283 DNHMITKTKVRHILIKTNELVDDAEANKRLLALKARIADGDDFAALARAHSDDKGSALKG 342
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKF 590
+ + + V P++ + + +V + K+
Sbjct: 343 GSLDWVGPGDLVKPFEEAMVKLGINEV-SDPVQTQFGWHIIQVLGRENKDDSSEFKKNLV 401
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ + ++ + + L+ + V ++ + +
Sbjct: 402 REAIRKRKIEEETELWVRRLRDEAFVEIYQDRL 434
>gi|294054630|ref|YP_003548288.1| hypothetical protein Caka_1097 [Coraliomargarita akajimensis DSM
45221]
gi|293613963|gb|ADE54118.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM
45221]
Length = 553
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 67/622 (10%), Positives = 155/622 (24%), Gaps = 97/622 (15%)
Query: 1 MLEIIRKAS---RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M+ I+ W+ LV++ V F+ + + + S+ +
Sbjct: 1 MISWIQHHLIRHGRWIFITLLVIIVVAFVFTIGNTPGCTTNRSTY----------QAQNF 50
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGL----DKKILDNLVSGATLDQFIEDIGL-EADH 112
+ Q +G VN + G D++ L + +G+
Sbjct: 51 FGYDLNSPRDRQILGQKVNLSSIINTGRPIVSDQQYQVQLPQRIAMLFLAGQLGIPTPTQ 110
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE----YIDHYTKMLSRTDVVGMF 168
+ I P+F G D +FS D F + N + ++ + V +
Sbjct: 111 EELSEYIQTKPIFFGPDGQFSRDTFTNVTDNLESNPEFPRGLFVTVLEEDYRIDQVRAVV 170
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
G + + + L P+ A L ++E K +Y P
Sbjct: 171 SGPGFVLPAEARVQTQRNQTSYKLSTASLAYSTFSPELAPAEADLKAYYETNKQSYEIPV 230
Query: 229 YKRISYILFDVHEK-EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ Y+LF + EL+ + N+ ++ S Q + EA
Sbjct: 231 RVKSEYVLFKSEAYLDSSKTYDESELRDHFIANRARFVSEYEAKQPQAEPAAEGEAAPEK 290
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
++ +A++ +
Sbjct: 291 AAVTYENVKDAVAQDYALVQAA-------------------------------------- 312
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ + + I KA + + E +
Sbjct: 313 -----KTANNAAQAFALTLYNDFIEQDSEAFKALLAEYKVSLQAVEPFTQADTAQRNLPA 367
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
E + + +A P + P + +
Sbjct: 368 EML-------TEAFSLPSNRYYTSAYPTADGYAVLFRTGTIPAEIPPFEVVAAEVTTAYK 420
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
E + + ++ K+ +E + LG
Sbjct: 421 ADEKRKLFNDNGLRLKDELDTQLSAGKSFKEA---------------------AEGLGLQ 459
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ + ++ + + + Q + V + V V + ++
Sbjct: 460 VQSFDRFEFTEAPAE-LNRSALDQAQNLEAGAVSSMISTQDDLGLFVFVEEKIVPEITDE 518
Query: 588 DKFISYLTQMMNKDLLDSVIAY 609
++ + Q +++ L I+
Sbjct: 519 NEDFAQAEQWLSQ--LSQYISA 538
>gi|322417707|ref|YP_004196930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
gi|320124094|gb|ADW11654.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
Length = 319
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/196 (15%), Positives = 60/196 (30%), Gaps = 12/196 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+AKI + + L + S V + + + + + QK
Sbjct: 1 MAKIIMACTLLALLAV-TPTFAHAKPISGIAAIVNDEVITSTDVDREY-----ALMQKEA 54
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ + +GL L+ LV ++Q I ++ ++ V I K N
Sbjct: 55 EKLPASE--KMGLKSAALNRLVDKKLVEQKIRELDIKVSDEDVRLAIEDVK----KQNNL 108
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ + LA +G+ +Y + L R ++ V +
Sbjct: 109 TQEALEQALATQGLTFAQYQVQLKEQLERMRLMSQEVRSKIQVGEREMREYYESHRADYG 168
Query: 193 DYIVLNNRHVPAIADP 208
+ RH+ DP
Sbjct: 169 GSETFHARHIFFKVDP 184
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 17/180 (9%), Positives = 48/180 (26%), Gaps = 8/180 (4%)
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ SK Y + + + V A+ A +
Sbjct: 142 SQEVRSKIQVGEREMREYYESHRADYGGSETFHARHIFFKVDPKASAEDAAK-AEKLAGE 200
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
++ + + G++F ++ K + + + + V + V
Sbjct: 201 VLAKA-RAGEDFAELAKKYSQDPSAAKDGGDLGTFKRSDMLPEIGDTVAAMKPGDVSSIV 259
Query: 565 IENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ K+ + KD L + + + + + L++ S+ +
Sbjct: 260 SSP-AGLHIIKLEQKSQEKGRSFEEVKDSIEEQLYKKKSDERFNQWVKELRNAASIDIKQ 318
>gi|150006852|ref|YP_001301595.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides distasonis
ATCC 8503]
gi|255016117|ref|ZP_05288243.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_7]
gi|256842537|ref|ZP_05548039.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides sp. D13]
gi|262384400|ref|ZP_06077535.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_33B]
gi|298377277|ref|ZP_06987230.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_19]
gi|301308674|ref|ZP_07214626.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 20_3]
gi|149935276|gb|ABR41973.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides distasonis
ATCC 8503]
gi|256735893|gb|EEU49225.1| peptidyl-prolyl cis-trans isomerase [Parabacteroides sp. D13]
gi|262294103|gb|EEY82036.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_33B]
gi|298265691|gb|EFI07351.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_19]
gi|300833198|gb|EFK63816.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 20_3]
Length = 711
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 59/560 (10%), Positives = 137/560 (24%), Gaps = 37/560 (6%)
Query: 25 FLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
F + D L S S + + + V + + M + G E
Sbjct: 23 FAFI-IGDFLNSGSTYFRQSQERIAEIDGEVVKIQDYQGRVDEMAEMYKMQSGSASLPEE 81
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE---------IARSPLFHG-KD 129
+ + + D +V LD+ +G+ ++ I + +F +
Sbjct: 82 -YMTQIRQSVFDAMVQEVVLDEATAKLGMGVSPEELFDMVQGENISPLIQQMQMFTNPQT 140
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
F ++ L + + + L+Q
Sbjct: 141 GAFDKAALLNFLKQIDSDNIASYPADQQAQLIQAKNFWLFWEKNIKRQRLEQKYTTLLSK 200
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
+ A+ S+ + + K L++
Sbjct: 201 AISANSLDAKEAYNDNAENSDIIYAMQSYATIPDSTIEVSKSEIEKLYNQ---------- 250
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
EL + E KY + +IR ++ Q E + + L ++ + E +
Sbjct: 251 RKELYKQKESKVIKYIAVDIRPSKEDYDKAQAEIESLKEELATSERVADVVNENSEVP-- 308
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
+ +F E D + + + PV + V +V +
Sbjct: 309 -YVDAFFTEKALDPEMKQFATTSEVGAVYGPVFENDKYRMFKLVDKTVAPDSVKVSHIML 367
Query: 370 DIANQ-MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
++ A + + + V
Sbjct: 368 AGKSEAETTALADSLMGALKGGANFAELAKKYSADQAAENGGELGWFTEVTALRGVNDDF 427
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD-GSYMWVQIKESIPARDRKLEEVLTDVK 487
+ A + V T + Y I ++ + + ++
Sbjct: 428 KKAVFSTPLNEVAVVKSLYGTHLVKVTEKTGNVEKYKIADIDMTVSPSSKTYSNIYNELN 487
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + ++ A + D L S+ + + R +N
Sbjct: 488 QFVSKNNSMAKLEENAKEAGYNLISGATVTTD--DQLLGSIKNSRPVIRWAFQNDKGS-- 543
Query: 548 GISQVFSGPVEMVKCFPIEN 567
IS++F + V +
Sbjct: 544 -ISEIFECSDKFVVAAVEGS 562
Score = 60.3 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 62/561 (11%), Positives = 162/561 (28%), Gaps = 29/561 (5%)
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
++ N + ++ L+ L + I L+A ++
Sbjct: 168 QAQLIQAKNFWLFWEKNIKRQRLEQK-YTTLLSKAISANSLDAKEAYNDNAENSDIIYAM 226
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
+ D + ++ + ++ + + + + D K
Sbjct: 227 QSYATIPDS---TIEVSKSEIEKLYNQRKELYKQKESKVIKYIAVDIRPSKEDYDKAQAE 283
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
+ + + R + + S F K + + + V+ + +
Sbjct: 284 IESLKEELATSERVADVVNENSEVPYVDAFFTEKALDPEMKQFATTSEVGAVYGPVFEND 343
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
+ + I + AD +LK G F +LA++
Sbjct: 344 KYRMFKLVDKTVAPDSVKVSHIMLAGKSEAETTALADSLMGALKGGANFAELAKKYSADQ 403
Query: 308 ---SDISLGSFSKEY---IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
+ LG F++ + ++FS V+ +G + V+ +
Sbjct: 404 AAENGGELGWFTEVTALRGVNDDFKKAVFSTPLNEV--AVVKSLYGTHLVKVTE--KTGN 459
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
V ++ +K + + + ++E ++ I V
Sbjct: 460 VEKYKIADIDMTVSPSSKTYSNIYNELNQFVSKNNSMAKLEENAKEAGYNLISGATVT-- 517
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
+ + +I ++ F D + ++ ++ SI R ++
Sbjct: 518 ---TDDQLLGSIKNSRPVIRWAFQND--KGSISEIFECSDKFVVAAVEGSISEGYRPVDM 572
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
V ++ + K +++ A +L + + + +G+S+ + +N
Sbjct: 573 VAPALRAELAAQKKGDKI---AQELAAKNL---TSVEAYAETMGSSVDSVKFVNFGTRRI 626
Query: 542 KFFGYDG-ISQVFSGPVEMVKCFPIENGLSYVVFKV-TNSKVGPVQEKDKFISYLTQMMN 599
G + ++ + S P++ VFKV +K G + + I L
Sbjct: 627 AGIGIEPNLNAMVSMAQVDQVSAPVKGNNGVYVFKVYARNKDGKEFNEAEEIRALDASNA 686
Query: 600 KDLLDSVIAYLKSQYSVTVHD 620
+ I + + V +
Sbjct: 687 YRVGFQAIQSMVNNAKVEDNR 707
>gi|91790684|ref|YP_551636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
JS666]
gi|122070654|sp|Q121Q4|SURA_POLSJ RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|91699909|gb|ABE46738.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
JS666]
Length = 473
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 9/129 (6%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + + S + I Q+ G + L ++L+ L+S Q
Sbjct: 70 IVAVVNSEPITNSEVRTKLVRTEQQIIQQ-GSPLPP----RRELVPQVLERLISDKAQLQ 124
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
G+ D V + + N+ S D RL +GI ++ L
Sbjct: 125 LARSAGMRVDDNAVEAAVQTV----ARQNQISVDELRRRLKADGIAYSQFESDLRDELLV 180
Query: 162 TDVVGMFVG 170
+ + V
Sbjct: 181 SRLRQREVD 189
>gi|303256196|ref|ZP_07342212.1| peptidyl-prolyl cis-trans isomerase SurA [Burkholderiales bacterium
1_1_47]
gi|331001252|ref|ZP_08324878.1| SurA protein [Parasutterella excrementihominis YIT 11859]
gi|302860925|gb|EFL84000.1| peptidyl-prolyl cis-trans isomerase SurA [Burkholderiales bacterium
1_1_47]
gi|329568979|gb|EGG50775.1| SurA protein [Parasutterella excrementihominis YIT 11859]
Length = 453
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 52/176 (29%), Gaps = 10/176 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + Q + ++ + + L + LD ++ +
Sbjct: 48 DRIAAVVNHDVITEIQLQQRIHQVATNLRRRNIPLPPMD-----NLRDQTLDRMILERII 102
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+Q D G+ D + G I + +N + +LA +GI+ + L
Sbjct: 103 EQKARDTGIRIDDNMLNGAIEQI----ATNNGLTVPQLEKKLAADGISVPSFKSEIRSEL 158
Query: 160 SRTDVVGMFVGGM-RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
+ V + +DQ + L+ + +P+ A +
Sbjct: 159 LTQRLRERDVDDKIQIPESEIDQYLKDQSGPGKRMEYRLSRIVISFPENPTKAEVE 214
>gi|302876602|ref|YP_003845235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
cellulovorans 743B]
gi|307687276|ref|ZP_07629722.1| peptidylprolyl isomerase [Clostridium cellulovorans 743B]
gi|302579459|gb|ADL53471.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
cellulovorans 743B]
Length = 339
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/191 (12%), Positives = 56/191 (29%), Gaps = 4/191 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + V + L + + G+++ + V VG +K+ + + +
Sbjct: 2 KNIKKLVTAVMLGTMIISVSACGIAEKTPAAKAKQVVAKVGEKKITRGEVDTAMQSYIDE 61
Query: 67 ISQKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-ARS 122
K G + + + + L N+V + Q+IED LE + + E
Sbjct: 62 AKAKYGEKYETSKEAMKSINAQREAQLKNMVDTELMLQYIEDNNLEINMDEINSETDKEI 121
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
+ ++ L G + + ++ + S+ L +
Sbjct: 122 EKMKTDYGQGDEQKYIDVLKNAGFTPESFKEYTKNRKLTDKAKEAIGKDITVSDEELATS 181
Query: 183 KRFYFENRSVD 193
Sbjct: 182 FNEETFKTEKA 192
>gi|148269160|ref|YP_001243620.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
petrophila RKU-1]
gi|170287822|ref|YP_001738060.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga sp. RQ2]
gi|281411458|ref|YP_003345537.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
naphthophila RKU-10]
gi|147734704|gb|ABQ46044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
petrophila RKU-1]
gi|170175325|gb|ACB08377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga sp. RQ2]
gi|281372561|gb|ADA66123.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga
naphthophila RKU-10]
Length = 329
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/313 (10%), Positives = 93/313 (29%), Gaps = 15/313 (4%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS--SFINSWKQELGMISQKIGF 73
IF++++ + ++G + + S+ V V + L I+Q
Sbjct: 5 IFVILVVLGISLFG----QATTTSSTVVAIVNGNPITSDLLELEADIDGILRSIAQIDLR 60
Query: 74 VVNSERARSVGLD------KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
N GL +++L++L+ + Q E G+ V E+
Sbjct: 61 FFNVLTGTEEGLKLLLKYKQEVLNSLIDDLLVQQLAEKEGVGVSDEEVKKEVEARLKETV 120
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
+ + + L R G + E +T + + N + + +
Sbjct: 121 ETMGITLEDLDKFLQRAGYGDLESFKKRLHWHMKTQLSLQRLQEKITQNATVTLEEAQNY 180
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
N++ + + + ++ +
Sbjct: 181 YNQNKETYRIPAAVHLYRITTEDKSKMDEALSKIRKGEDFLEVATQVATGGDLGWIEEGK 240
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA---DEAFQSLKKGKKFIQLAEEQG 304
+ D ++ + P + +++ ++ + F+ +K+ LA+++
Sbjct: 241 LEKDIESVIFDAPEGAILGPFESEGKFVLYKVVEKRSSSYKKFEEVKQEIMDKLLADKKN 300
Query: 305 KSLSDISLGSFSK 317
+ +D F +
Sbjct: 301 QLWNDWFNKVFEE 313
>gi|114319362|ref|YP_741045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola
ehrlichii MLHE-1]
gi|122070615|sp|Q0AC82|SURA_ALHEH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|114225756|gb|ABI55555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola
ehrlichii MLHE-1]
Length = 433
Score = 69.5 bits (167), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/405 (10%), Positives = 101/405 (24%), Gaps = 63/405 (15%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V Q V S + + G + +++L+ L++
Sbjct: 32 DRIVAVVDDQVVLASELERELATIANQLRSR-GQRLPPRDV----FQRQVLERLITQRVQ 86
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ +G+ D + + R + N + F + +EG + + + +
Sbjct: 87 LSRAQRVGITVDDATLDAAMQRM----ARQNNMTLGQFRQAVEQEGFEYNYFREGIREEI 142
Query: 160 SRTDVV--------------------------------GMFVGGMRPSNLLLDQAKRFYF 187
+ + + + V ++ + R
Sbjct: 143 AISRLRQAQVEEQVTVTPQEVEEVLETLDDENQEYRLGHILVATPEAASTAQLEEARERI 202
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP----EYKRISYILFDVHEKE 243
E I A S+A + + I L
Sbjct: 203 EQLREQIIAGETDFEGAATAFSDAASAMEGGDLGWRLHSQLPSLFAEAIDEGLQAGEVSG 262
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL----------KKG 293
S L ++ + ++ + + + G
Sbjct: 263 VLQNSSGFHLVKLMDQRTQGGERVTETRARHILIRTDGDVITDEDARLRLRSLLERIEAG 322
Query: 294 KKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ F +LAE + LG + + ++G + FG+
Sbjct: 323 ESFAELAEAYSEDPGSAARGGDLGWTQPGQLV-PEFQGA-MDALEEGQISAPFASPFGWH 380
Query: 350 IAHVSNIKPSF--TVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
I V++ + ++ +Q ++ +A E+ +
Sbjct: 381 IVQVTDRRERDVSRERLRDQLAQQIHQRKVEEAFEQWIRRLRDEA 425
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/353 (8%), Positives = 98/353 (27%), Gaps = 8/353 (2%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE-YIPDVSLADSIFS 331
E+L+ + + + + A ++ ++++LG F +
Sbjct: 78 ERLITQRVQLSRAQRVGITVDDATLDAAMQRMARQNNMTLGQFRQAVEQEGFEYNYFREG 137
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+ ++ + + + + + ++ + E
Sbjct: 138 IREEIAISRLRQAQVEEQVTVTPQEVEEVLETLDDENQEYRLGHILVATPEAASTAQLEE 197
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD--DP 449
I+ D A G + + LF +
Sbjct: 198 ARERIEQLREQIIAGETDFEGAATAFSDAASAMEGGDLGWRLHSQLPSLFAEAIDEGLQA 257
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
+ G ++ + + +R E + +E + + +LE
Sbjct: 258 GEVSGVLQNSSGFHLVKLMDQRTQGGERVTETRARHILIRTDGDVITDEDARLRLRSLLE 317
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENG 568
+ G++F ++ + + + + + + + + + P +
Sbjct: 318 RIEAGESFAELAEAYSEDPGSAARGGDLGWTQPGQLVPEFQGAMDALEEGQI-SAPFASP 376
Query: 569 LSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + +VT+ + V +D+ + Q ++ + I L+ + V V
Sbjct: 377 FGWHIVQVTDRRERDVSRERLRDQLAQQIHQRKVEEAFEQWIRRLRDEAYVDV 429
>gi|134297991|ref|YP_001111487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
reducens MI-1]
gi|134050691|gb|ABO48662.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
reducens MI-1]
Length = 344
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/178 (11%), Positives = 52/178 (29%), Gaps = 8/178 (4%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVGLDKKILDNLV 94
+ ++ V +V + + Q + Q+ GF + ++ A L++ ILD+++
Sbjct: 25 NNKANVVATVNGKDITRQQLDKQTNQMVERYKQQ-GFDLTTKENKAMKEQLEQSILDDMI 83
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
+ L Q E L + +A + + + L + E E +
Sbjct: 84 TKELLLQEAEKQKLIPAKEAIDKNMAEIK-----KGFPNEEEYKKALEESKVTEAELREQ 138
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
S + ++ + R + ++
Sbjct: 139 LILDESSRKLYEKVTADVKKPTDEEITKFYNENKGREPIGTPERLEVKHMLFAINSDQ 196
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 29/323 (8%), Positives = 87/323 (26%), Gaps = 22/323 (6%)
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
A + ++ ++ +++ + + + D T + + +
Sbjct: 24 ANNKANVVATVNGKDITRQQLDKQTNQMVERYKQQGFDLTTKENKAMKEQLEQSILDDMI 83
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + + + E K +++E E + L L +
Sbjct: 84 TKELLLQEAEKQKLIPAKEAIDKNMAEIKKGFPNEEEYKKALEESKVTEAELREQLILDE 143
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+ K + ++ + + + ++ T + +M I P +
Sbjct: 144 SSRKLYEKVTADVKKPTDEEITKFYNENKGREPIGTPERLEVKHMLFAINSDQPGVPK-- 201
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM-- 537
+ +E A + E +++G++F + + L T
Sbjct: 202 --------------RGEKEALEAAKLALAEVTQKGRDFGVVAREKSDDLGTRENGGSYTI 247
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISY 593
D + + P+++ + + K+ + KD +
Sbjct: 248 DRGANTTDPAFEKAAENLKPGEITKEPVKSAYGFHIIKLEKVTPASTKALTEVKDSIAAQ 307
Query: 594 LTQMMNKDLLDSVIAYLKSQYSV 616
L + I L+ +
Sbjct: 308 LEGEAKQAKFTQFIDNLRKNAKI 330
>gi|78357080|ref|YP_388529.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
gi|78219485|gb|ABB38834.1| peptidyl-prolyl cis-trans isomerase domain protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 329
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/180 (11%), Positives = 54/180 (30%), Gaps = 6/180 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V V + + +L ++ + ++ + L++++ +
Sbjct: 45 NKIVAVVNGEIITQYDLQARAASKLHRAGLSALDPADAAAIKK--IESETLEDMIVDRLM 102
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E L AD V E+ + + D V++L EG + Y +
Sbjct: 103 VQEAERYNLGADDAAVDNELRSLLA----RMQITEDQLVAQLKSEGQDLDFYRGLIRNNI 158
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
R ++ V +A +N + ++ + + + +
Sbjct: 159 MRQKLLSFMVSRKVVVTRQDIEAYYEEHKNEYMQDKSISLSLLVFAPTADPEPVLRDIRE 218
>gi|293603514|ref|ZP_06685936.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
43553]
gi|292818100|gb|EFF77159.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
43553]
Length = 335
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 38/135 (28%), Gaps = 9/135 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + ++ + + + G V ++ L ++L L+
Sbjct: 61 DGIAAVVDKDVITLRELRDASVRISSELKSR-GIQVPDDQT----LQHQVLQRLIMERVQ 115
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ +G+ D +V I NK S + + + G Y + +
Sbjct: 116 RHEADRLGIRVDDAQVDQAIQTIAA----RNKISVAQLRAEIEKSGAGWDAYRKSLREEI 171
Query: 160 SRTDVVGMFVGGMRP 174
+ V
Sbjct: 172 RTDRLRQRAVDSNIV 186
>gi|289579378|ref|YP_003478005.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
italicus Ab9]
gi|289529091|gb|ADD03443.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
italicus Ab9]
Length = 301
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 40/125 (32%), Gaps = 7/125 (5%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+ L + F + + + V +V + + + + ++ Q I + +
Sbjct: 5 IALILSFGFI-VFLLVSCSAKKEVVATVNGENITNAEYRKAFDQVKAQIESSPQYTKDIW 63
Query: 79 RARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
G + + +LD+L++ L Q + + E R F+ K
Sbjct: 64 NQDYEGKKFLDVVKENVLDSLIAQKLLLQEALKNNVTVTDKEIEEEYQREKEFNKDITKE 123
Query: 133 SHDVF 137
+
Sbjct: 124 EVKNY 128
Score = 45.6 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 29/254 (11%), Positives = 76/254 (29%), Gaps = 11/254 (4%)
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
+ + +++ + ++ + K L + ++
Sbjct: 40 EYRKAFDQVKAQIESSPQYTKDIWNQDYEGKKFLDVVKENV--LDSLIAQKLLLQEALKN 97
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE----VLTDVK 487
+ ++ + + ++ +KD T + ++ E + EE D K
Sbjct: 98 NVTVTDKEIEEEYQREKEFNKDITKEEVKNYLLINKLFEEYTKDVKVTEEELKKYYEDNK 157
Query: 488 KDWKTVKTAEEV--SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN-KFF 544
++TVK + + K Q + +G++F + K T +Q +
Sbjct: 158 DRFETVKASHILVSDEKIAQDIYNRLMKGEDFSTLAKEYSIDTATKDQGGDLGEFARGVM 217
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-KFISYLTQMMNKDLL 603
+ FS + P++ Y + K + + E +YL ++
Sbjct: 218 VPEFEQVAFSLKKGEI-SKPVKTDYGYHIIKSEGATLKSFDEVKGDIEAYLLNDKKNQVI 276
Query: 604 DSVIAYLKSQYSVT 617
L+ +
Sbjct: 277 TEKYDALEKAAKIQ 290
>gi|300705125|ref|YP_003746728.1| peptidyl-prolyl cis-trans isomerase (ppiase), involved in
maturation of outer membrane proteins [Ralstonia
solanacearum CFBP2957]
gi|299072789|emb|CBJ44144.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
maturation of outer membrane proteins [Ralstonia
solanacearum CFBP2957]
Length = 474
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 41/141 (29%), Gaps = 9/141 (6%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S A S V V + ++ + + + L ++L
Sbjct: 58 SGAARSQLVDEVVAVVNTDIITRRELLDRADLVERTLQAQNRPMPARAD-----LLGEVL 112
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ L+ Q ++ G+ V + + N S S+L + G+ +
Sbjct: 113 EQLILERVQAQTAKESGIRVSDADVDRAVESV----AQRNNLSVPQLKSKLVQSGLAYDK 168
Query: 151 YIDHYTKMLSRTDVVGMFVGG 171
Y + + + + V
Sbjct: 169 YREDLRQEILLARLRDREVDS 189
>gi|77461354|ref|YP_350861.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
fluorescens Pf0-1]
gi|121956432|sp|Q3K5T4|SURA_PSEPF RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|77385357|gb|ABA76870.1| putative chaperone [Pseudomonas fluorescens Pf0-1]
Length = 426
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 51/149 (34%), Gaps = 9/149 (6%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
+ L G + S V V V S + I+++ G +
Sbjct: 1 MLGALFLGTAANAAVQSIDRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGLPPP---- 56
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
LD+++L+ L+ Q E G+ + + + N + + F L
Sbjct: 57 -GVLDQQVLERLIVENLQLQIGERSGIRITDEELNQAVGTI----AQRNNMTPEQFRIAL 111
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+R+G++ ++ + + + + V V
Sbjct: 112 SRDGLSYEDAREQIRREMVISRVRQRRVA 140
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 23/259 (8%), Positives = 72/259 (27%), Gaps = 12/259 (4%)
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ ++A + + + L G +++ L D +
Sbjct: 175 PTPESANSEAIQSAARKAMEVYQQLKQGADFGQMAVANSASDNALEGGDMGWRKAAQLPP 234
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
+ A G ++ +++ E + +EV
Sbjct: 235 PFDRELSSMAT---------GDITQPARTPGGFIILKLLEKRGGESQMRDEVHVRHILVK 285
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+ E + + Q + + G++F ++ K + ++ +
Sbjct: 286 PSPVRDEAKTKELAQSLYNRIEAGEDFAELAKKYSEDPGSALNGGDLNWIDPNALVPEFR 345
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVI 607
V + + P + + V +V + E+ + ++ L + L + +
Sbjct: 346 AVMAKSPQGQLSKPFQTQYGWHVLEVLGRRATDSTEQAREQQAMTVLRNRKYDEELQTWL 405
Query: 608 AYLKSQYSVTVHDNLIQRY 626
++ + V + +
Sbjct: 406 RQIRDEAYVEIKLPGADQA 424
>gi|312880257|ref|ZP_07740057.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
gi|310783548|gb|EFQ23946.1| conserved hypothetical protein [Aminomonas paucivorans DSM 12260]
Length = 344
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/210 (13%), Positives = 70/210 (33%), Gaps = 15/210 (7%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVP-FLIWGLSD---ALFSVSGSSTVVSVGRQKVPFSSFI 57
++ +R R W+ + + V F +G+ V G +K+ SS
Sbjct: 3 MKYLRTNVR-WIMITVVALFVVSCFAGYGMYSRGQGQGGGMRDYAVAEAGGKKIMRSSLE 61
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++ + + S L K +LDN+V L + +E+ + V
Sbjct: 62 KGMQEMAEQFGNQ---QITSADL--PLLRKAVLDNIVVSEQLLREVENQKITVGDDEVAT 116
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ R +D + + ++ L R ++EK+ + +++ ++ G +
Sbjct: 117 ALKRI-----QDQFPTKEAYMQYLQRSNLSEKDVKARLREQIAQQKLMEKVSAGASVDIV 171
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ + + V ++
Sbjct: 172 DARKLYDAMKDMMFRRPMGYTVNVVTFRSE 201
>gi|331268339|ref|YP_004394831.1| parvulin-like peptidyl-prolyl isomerase [Clostridium botulinum
BKT015925]
gi|329124889|gb|AEB74834.1| parvulin-like peptidyl-prolyl isomerase [Clostridium botulinum
BKT015925]
Length = 348
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/206 (14%), Positives = 63/206 (30%), Gaps = 6/206 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW--KQEL 64
K R VA L V + + + + + V VG +K+ + + K+ L
Sbjct: 2 KNIRKLVATAVLCVFTMSAVGCSMIEKTPEAIKKTVVAKVGDKKITKGELDSHFGVKRYL 61
Query: 65 GMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEI-A 120
Q+ G + + + + S L Q E + L + + E+
Sbjct: 62 DQFKQQYGENFEQNPQVKEQVKQIKIAVAKQIASQEALKQEAEKLKLVPNDQELKKEMDK 121
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ F + N S L G+ + ++ + + ++ + ++
Sbjct: 122 KIQEFKKEQNIKDDKGLDSALKMSGLQKSDFEKLIKDNIIIEKLQNELTKNIKVDDKEIE 181
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIA 206
+ + D HV I
Sbjct: 182 KYYNTNKDKYPKDPKNPTKIHVAHII 207
>gi|329903502|ref|ZP_08273518.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase SurA) [Oxalobacteraceae bacterium IMCC9480]
gi|327548325|gb|EGF33013.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase SurA) [Oxalobacteraceae bacterium IMCC9480]
Length = 475
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 68/473 (14%), Positives = 136/473 (28%), Gaps = 80/473 (16%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + + + Q+ G + + L+K+IL+ ++
Sbjct: 64 DSIVAVVNSDVITRLDLNSRVALVETRMKQQ-GSQLP----QRALLEKQILERMIVDRAQ 118
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q D G++ D + +AR + NK S F ++L REG + + + +
Sbjct: 119 LQLAADSGIKIDDVMLDRAMARL----AEQNKLSMQDFRNQLEREGTPFSRFREEIREEI 174
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + V + + + + +
Sbjct: 175 AMQRIREREVDN---------------------------------KLQITESEVDNYLDA 201
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
K + ++Q EY + PE T EQ+
Sbjct: 202 EK---------------------------NAPQIQPEYNLAQILIRIPENATAEQIAARR 234
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
+ + + L+ G F +LA S+ LG + + +P D++ L + G
Sbjct: 235 ARAD-DVARQLRSGADFAKLAASYSDSIEALKGGELGWRTADRLP-QLFVDAVARLNE-G 291
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
+ + VI + G+ I V+ + S A Q + E L
Sbjct: 292 ELSAVIKSASGFHILKVAGKRTRSADSSTASAAAPAVQQTRARHILIKVNTIVTAAEALR 351
Query: 397 LGTSMDEISRREKIVSIDLPLV---DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
T + + + +L + D + R P
Sbjct: 352 KLTDLKQRLDNKAATFEELAKLYSNDLSASKGGDLGWIYPGDTVPEFERAMNLLKPGEVS 411
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ P G Y +++ E + + ++ + K E QL
Sbjct: 412 APIETPFG-YHLIEVIERKSQDVSQERK-RLSARQALRERKLEEATQDWIRQL 462
>gi|293392898|ref|ZP_06637215.1| peptidylprolyl cis-trans isomerase SurA [Serratia odorifera DSM
4582]
gi|291424432|gb|EFE97644.1| peptidylprolyl cis-trans isomerase SurA [Serratia odorifera DSM
4582]
Length = 433
Score = 69.1 bits (166), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 49/155 (31%), Gaps = 14/155 (9%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+ L ++ + + V V S + +Q+ G +
Sbjct: 7 LILGLVVCANAAFAAPQEV-----DKVAAVVDNGVVLESDVNGLLQSVKLN-AQQAGQQL 60
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ L +IL+ L+ Q + +G+ + I N+ S D
Sbjct: 61 PDD----KTLRHQILERLIMDNIQLQMAKKMGINVTDADLDKAIGNIAA----QNRMSID 112
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
SRLA EG+N Y K + T+V V
Sbjct: 113 QLRSRLAYEGLNYNTYRSQIRKEMLITEVRNNEVR 147
Score = 41.8 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 18/205 (8%), Positives = 51/205 (24%), Gaps = 6/205 (2%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D + L + G ++ ++
Sbjct: 222 DSQALKGGNMGWGKLQEIPTLFAERLVSAKKGDVVGPIRSGVGFHILKVNDLRGASQSIS 281
Query: 479 LEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ EV + V T ++ +K ++ F D K L + Q +
Sbjct: 282 VTEVHARHILLKPSVVMTDDQARAKLEEVAAAVKSGKAKFADEAKQLSQDPGSALQGGDL 341
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISY 593
+ + V P+ + + + ++ + +K++
Sbjct: 342 GWASPDIYDPAFRDALLKLQKGEVSQ-PVHSAFGWHLIQLLDTRQVDKTDAAQKERAYRM 400
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618
L + + + ++ V +
Sbjct: 401 LFNRKFAEEAQTWMQEQRAAAYVKI 425
>gi|114328860|ref|YP_746017.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
CGDNIH1]
gi|114317034|gb|ABI63094.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
CGDNIH1]
Length = 468
Score = 68.7 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 10/190 (5%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
S +S V V + + + G ++ E L ++L LV
Sbjct: 65 SSPDETSIVAVVNGDVISKGDVDAR----RRLFAMSTGLPMSKEVLDR--LTPQVLRQLV 118
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
Q I+ G+ + I + N D +LA +G++ + ID
Sbjct: 119 DEKLRLQEIQRRGIVITDSDIAHSIQGME----QRNGMQPDALRHKLAADGVSMRTLIDQ 174
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
L T V+ +G + Q + ++ + + DPS A
Sbjct: 175 IRVQLGWTRVLRQQLGERVRISDKEIQDEEELLASQKGQTEYRVSEIFIPVDDPSRAQAA 234
Query: 215 QWFEKYKDNY 224
F
Sbjct: 235 HDFADTVIQQ 244
>gi|70732935|ref|YP_262706.1| survival protein SurA [Pseudomonas fluorescens Pf-5]
gi|68347234|gb|AAY94840.1| survival protein SurA [Pseudomonas fluorescens Pf-5]
Length = 440
Score = 68.7 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 9/150 (6%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + L + + S V V V S + I+++ G V
Sbjct: 14 LMLGALFLSTAASAAVQSIDKVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPP---- 69
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L++++L+ L+ Q E G+ + I + N S + F +
Sbjct: 70 -TSVLEQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTI----AQRNSMSIEQFRAA 124
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA +G++ ++ D + + + V V
Sbjct: 125 LAHDGLSYEDARDQVRREMIISRVRQRRVA 154
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 19/239 (7%), Positives = 72/239 (30%), Gaps = 3/239 (1%)
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
++ + + + G + F +
Sbjct: 200 QSAARQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPFDRELSAMAV 259
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
A G ++ +++ + ++ +EV + +EE + + Q + +
Sbjct: 260 GDITQPARTPGGFIILKLLDKRGGGNQVRDEVHVRHILIKPSEIRSEEETKRLAQKLYDR 319
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
+ G++F ++ K+ + ++ + +V + + P ++
Sbjct: 320 IEAGEDFAELAKSYSEDPGSALNGGDLNWIDPNALVPEFREVMAKTPQGQLSKPFKSPYG 379
Query: 571 YVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ V +V + + + ++ L + L + + ++ + V + ++
Sbjct: 380 WHVLEVLGRRATDSTSQAREQQAMTVLRNRKYDEELQTWLRQIRDEAYVEIKLPGAEQA 438
>gi|297585156|ref|YP_003700936.1| SurA domain-containing protein [Bacillus selenitireducens MLS10]
gi|297143613|gb|ADI00371.1| SurA domain protein [Bacillus selenitireducens MLS10]
Length = 272
Score = 68.7 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 56/170 (32%), Gaps = 5/170 (2%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V V +++ F+ +++ + ++ + + E + + D++V+ L
Sbjct: 81 DVVAEVNGEEISQEEFLATYEPQFQQMAMQ--SQMTGEEVDEAQIRDMVADSMVNNTLLI 138
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q + G+EA + + ++ S D F+ L +G E +D +
Sbjct: 139 QEADSQGIEATDEDIEQLLTELAQ---QNQMESSDQFLQALEEQGTPEDVVMDQVEMQVK 195
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
++ G + S+ +++ + L
Sbjct: 196 VDQLIANEAGEIDVSDAEVEEMYAQLEAQQEQSGGELPPLDEIRTEIEDE 245
>gi|325479322|gb|EGC82418.1| conserved domain protein [Anaerococcus prevotii ACS-065-V-Col13]
Length = 303
Score = 68.7 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/292 (11%), Positives = 82/292 (28%), Gaps = 13/292 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++ +R + + L L + S + + V V +++ + K
Sbjct: 1 MKNLRAITNKLIFYAILAFLVLT-------GCKRSSNKTDAVAVVDGKEISSKDYSKELK 53
Query: 62 QELGMISQKIGFVVNSERARS-----VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
S+ G SE+ ++ L K++LD+++ + +E ++ D V
Sbjct: 54 FYQSYYSKLYGDNYLSEKNKNGLTNDEILRKELLDSMIKDKIMLSDLEKNKIKLDDNNVI 113
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ +V NE + D K V V +
Sbjct: 114 KLTDNLKKSMNGEDSLGANVDALNANGNLFNEIIFNDAIRKSHYEMFVSKQSVRDSDVLD 173
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA-VLTQWFEKYKDNYRAPEYKRISYI 235
K ++ N + +NA ++ K NY +
Sbjct: 174 FYKKNKKYQKMYKYNLIVFDDENEAKDIKKNITNAKKFNEYLNKSVRNYDIVNSEFAYSD 233
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ + + ++ +K + +L+ + +
Sbjct: 234 DEVLKASKLTEKNRPSDVFKYNDKYIIAMINSYNENENELLMNAKSVYQKKA 285
>gi|213967673|ref|ZP_03395820.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
tomato T1]
gi|213927449|gb|EEB60997.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv.
tomato T1]
Length = 428
Score = 68.7 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ I+++ V + L ++LD L+
Sbjct: 19 DSVVAIVDNDVIMKSQMGQRVREVQQTIAKRGSGVPPAAD-----LQPQVLDRLILENLQ 73
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S + F + LA +G++ ++ + + +
Sbjct: 74 LQMGERSGIRVSDDELNQAIGTI----AQRNNMSVEQFRAALAHDGLSYEDAREQVRREM 129
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 130 IISRVRQRRVA 140
>gi|167036601|ref|YP_001664179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167039253|ref|YP_001662238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
sp. X514]
gi|300913893|ref|ZP_07131210.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
sp. X561]
gi|307725422|ref|YP_003905173.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
sp. X513]
gi|320115028|ref|YP_004185187.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166853493|gb|ABY91902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
sp. X514]
gi|166855435|gb|ABY93843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|300890578|gb|EFK85723.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
sp. X561]
gi|307582483|gb|ADN55882.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
sp. X513]
gi|319928119|gb|ADV78804.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 301
Score = 68.7 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 7/125 (5%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+ L + F+ + + + V V + + + + + Q I + +
Sbjct: 5 IALLLSFVFI-VFLTVSCSAEKDVVAVVNGENITNAEYKKVFDQVKAQIESSPQYTKDIW 63
Query: 79 RARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
G + + +LD+L++ L Q + + E + + K
Sbjct: 64 DEDYQGKKFLDVVKENVLDSLIAEKLLVQEALKNNITVTDKEIEDEYQKQKEVNKDITKE 123
Query: 133 SHDVF 137
+
Sbjct: 124 DVKNY 128
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 77/263 (29%), Gaps = 12/263 (4%)
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ F +VK I + + TK K+ + + I+ + +
Sbjct: 38 NAEYKKVFDQVKAQIESSPQYTKDIWDEDYQGKKFLDVVKENVLDSLIAEKLLVQEALKN 97
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+ K+++ + + + ++K D ++K+ +
Sbjct: 98 NITVTDKEIEDEYQKQKEVNKDITKEDVKNYLLINKLFDEYTKDVKVTEEELKKYYEDNE 157
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ E V K + + +G++F + K T +Q
Sbjct: 158 EQFETVKASHILVV---------DEKTAEDIYNRLMKGEDFATLAKEYSVDTATKDQGGD 208
Query: 537 MD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYL 594
+ + + VFS + P++ Y + K + P E KD SYL
Sbjct: 209 LGEFPHGVMVPEFDQVVFSLKKGEI-SKPVKTDYGYHIIKSDGVIIKPFDEVKDTIESYL 267
Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617
++ L+ +
Sbjct: 268 LDDKKNQVIIEKYDALEKAAKIQ 290
>gi|149175489|ref|ZP_01854110.1| hypothetical protein PM8797T_18534 [Planctomyces maris DSM 8797]
gi|148845757|gb|EDL60099.1| hypothetical protein PM8797T_18534 [Planctomyces maris DSM 8797]
Length = 856
Score = 68.7 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 58/639 (9%), Positives = 151/639 (23%), Gaps = 69/639 (10%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVV-------------SVGRQ--------KVPFSS 55
+LF F+ W L + + V VG + +
Sbjct: 77 IAGMLFFGFVFWHLGRDRGKGTQFAVVGIIIGFFVGYLYIPKVGAETVVTSTAGDIDMRQ 136
Query: 56 FINSWKQEL---GMISQKIGFVVNSERAR--------SVGLDKKILDNLVSGATLDQFIE 104
+ + I + + E + G +++ D+++ + E
Sbjct: 137 YQEMVQNRQIANQFIMRSYMASLTEEEQQRPQPPRGAMFGFGREMEDDIILEYLFRKEAE 196
Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+ L V I+ +NK S F + G E + D + L
Sbjct: 197 KMNLIVSDDAVSNYIS-----RYTNNKLSRKAFQETCQQLGKTEGQIYDIFRDQLQARLA 251
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD-PSNAVLTQWFEKYKDN 223
M + + + + ++ + L + PS+A +FE YK
Sbjct: 252 FQMLRPEVSLTPDQYWNFYKKFNVREELELVALPVKDFEGEVPAPSDAEKKAFFETYKTV 311
Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
+ + + + + + + + + +K + ++ ++ N
Sbjct: 312 FPGEKGPGSPGLRQPQKVQVEYLMADYVDTEKQVPPITDKEIAAFYEDNKERLYKNNPIP 371
Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
D S ++ + + + A
Sbjct: 372 DLPAGST---VPTAPELPAPSGPKTEKPTEAAKPGAGEKPAEKPAKKPAATPAKTETPAK 428
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
P+ + + + + + + K E + + L +
Sbjct: 429 PE-----------TPAKPKADTKPEPESKPEPKTEKKEESSALAAESITFVSLLDEKPAD 477
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ + L + + S
Sbjct: 478 TPVVAPKPGAETAGAKPEATTTAPPPLEPYRPLNDDLKSEIRDQLLRERTLDLMKDKISE 537
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ-LVLEYSKEGKNFRDIGK 522
+ + E + + + + A + ++ + +++ +
Sbjct: 538 AVLFMNELSDKITNP-----EEGATVPTPEEATKTLKEYAAKHQLIYNITPMMSAQEMSE 592
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL-------SYVVFK 575
+ L T + + I Q+F PV + + +
Sbjct: 593 SEKYPLGTAKEPTINQFAAQ--PRTAIEQLFETPVNLTYIPYEAEDSFSSGLLCYWKIKH 650
Query: 576 VTNSKV--GPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
V + + + L + L LK
Sbjct: 651 VDATIPEFDDPEIDQQITEQLKLEKARPLAQKRGEELKK 689
>gi|323697784|ref|ZP_08109696.1| SurA domain [Desulfovibrio sp. ND132]
gi|323457716|gb|EGB13581.1| SurA domain [Desulfovibrio desulfuricans ND132]
Length = 323
Score = 68.7 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/212 (16%), Positives = 79/212 (37%), Gaps = 6/212 (2%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ K+ ++L LI L+ V +V + V K I +
Sbjct: 1 MVKVVSLLLGAMLLICPLTAQAEDVVVDRILVKINDSIVTQYDLDQEMKPVYDQIKDR-- 58
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ E+ + GL ++ LD LV+ + Q I+ +E + EI R + K
Sbjct: 59 KLTAREQTQLEGLRRQALDKLVNDVLIQQEIKRFSVEVSDENIDKEIERVRT----ERKL 114
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ + F +A++G++ +E+ K+L + +++G V Q + ++
Sbjct: 115 TLEEFQQMVAQDGLSMEEFRSRLKKLLEKQELIGHMVNSKVVVTDSEIQQEYEARKDDYS 174
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
++ + ++ S + + + +
Sbjct: 175 MGKMVELAIILLPSEVSPVEVRERITSGEMTF 206
>gi|238764654|ref|ZP_04625599.1| Chaperone surA [Yersinia kristensenii ATCC 33638]
gi|238697146|gb|EEP89918.1| Chaperone surA [Yersinia kristensenii ATCC 33638]
Length = 424
Score = 68.7 bits (165), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 9/135 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V S + +Q+ G V + L +IL+ L+
Sbjct: 16 DKVAAVVDNGVVLQSDVDGLLQSVKLN-AQQAGQEVPDD----ATLRHQILERLIMDNIQ 70
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + +G+ + IA N+ + D SRLA +G+N Y + K +
Sbjct: 71 LQMAKKMGITISDEALDKAIADIAA----QNRMTPDQMRSRLAADGLNYDTYREQIRKEM 126
Query: 160 SRTDVVGMFVGGMRP 174
++V V
Sbjct: 127 LTSEVRNNEVRRRIT 141
Score = 38.3 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 28/371 (7%), Positives = 88/371 (23%), Gaps = 9/371 (2%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++ + K+ K +A + + +
Sbjct: 48 QEVPDDATLRHQILERLIMDNIQLQMAKKMGITISDEALDKAIADIAAQNRMTPDQMRSR 107
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ D + + + V + + +
Sbjct: 108 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVEALAKQVGNQTSGDTELNLS 167
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I ++ + E+ S + ++I D +
Sbjct: 168 HILIPLPENPSQQQVDQAEDVANKLVSDIKGGADFGKLAI-ANSADSQALKGGQMGWGKL 226
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWK 491
L + + G + +++ + E +
Sbjct: 227 QELPSLFAERLQSANKGDVVGPIRSGVG-FHILKVNDIRGGDNTVSVTEVHARHILLKPS 285
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGIS 550
V T ++ +K + +F I K + + Q + +
Sbjct: 286 PVMTDDQARAKLAAAAADIKSGKTDFATIAKEISQDPGSAMQGGDLGWASPDIYDPAFRD 345
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ + P+ + + + +V + +KD+ L + + +
Sbjct: 346 ALMKLKKGEIST-PVHSSFGWHLIQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWM 404
Query: 608 AYLKSQYSVTV 618
++ V +
Sbjct: 405 QEQRAAAYVKI 415
>gi|119504985|ref|ZP_01627062.1| Parvulin-like peptidyl-prolyl isomerase [marine gamma
proteobacterium HTCC2080]
gi|119459271|gb|EAW40369.1| Parvulin-like peptidyl-prolyl isomerase [marine gamma
proteobacterium HTCC2080]
Length = 436
Score = 68.3 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 42/401 (10%), Positives = 101/401 (25%), Gaps = 58/401 (14%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + I Q+ E L ++ LD L+ +
Sbjct: 42 DKVVAIVDDDIILATELQERLLLIQRNIEQRQIDAPPDE-----VLARETLDRLILESIQ 96
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q G+ ++ +AR + ++ + F + + G + + + +
Sbjct: 97 LQLANRYGVRIPDAQLDAAMARMAS----GSNYTLEQFRAAVEANGQSYLAMREEIRREM 152
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
V V + + ++ + ++
Sbjct: 153 MIQRVQQGNVSRNIEISEQEVDNFLSTEAGAEMTQPEFRVIQALVEVSKKDSKADRQKKE 212
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE----------- 268
+ V E + D + + + +
Sbjct: 213 DFVDGILASILAGKDFPEAVSVIEPYVFKGGDLGWKKLDAIPSMFAAVIPSLKVGDTAKV 272
Query: 269 ----------------------IRTVEQLVFPNQKEADEA---------FQSLKKGKKFI 297
V ++ + DE Q G+ F
Sbjct: 273 ASGAGFHLVYLADERGRERLVEQTEVRHILIKPTEVLDEDAAIALATELRQRAMDGEDFG 332
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
LA+E LG S + D+ + + G+ + + FG+ I V
Sbjct: 333 ALAKEYSDDIGSAQEGGELGWTSPGQMVPE--FDATMATTEVGEISYPVKSQFGWHILEV 390
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ + Q ++ + + K E+++ +++ E
Sbjct: 391 TGRREENIAE-QMRRQQVMGYLHDQKYDEELEAWLRKIREE 430
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 35/350 (10%), Positives = 106/350 (30%), Gaps = 6/350 (1%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
++L+ + + ++ + A + S S+ +L F + ++
Sbjct: 88 DRLILESIQLQLANRYGVRIPDAQLDAAMARMASGSNYTLEQFRAAVEANGQSYLAMREE 147
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
++ + +S + +S + + + R+ +A +V + + +
Sbjct: 148 IRREMMIQRVQQGNVSRNIEISEQEVDNFLSTEAGAEMTQPEFRVIQALVEVSKKDSKAD 207
Query: 393 EFLALGTSMDEISRRE-KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
++ + V G +F +
Sbjct: 208 RQKKEDFVDGILASILAGKDFPEAVSVIEPYVFKGGDLGWKKLDAIPSMFAAVIPSLKVG 267
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
VA G ++ E R + EV + V + + A +L
Sbjct: 268 DTAKVASGAGFHLVYLADERGRERLVEQTEVR-HILIKPTEVLDEDAAIALATELRQRAM 326
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571
+G++F + K + + + + + + +P+++ +
Sbjct: 327 -DGEDFGALAKEYSDDIGSAQEGGELGWTSPGQMVPEFDATMATTEVGEISYPVKSQFGW 385
Query: 572 VVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ +VT + + E + + + YL + L++ + ++ + V +
Sbjct: 386 HILEVTGRREENIAEQMRRQQVMGYLHDQKYDEELEAWLRKIREEAFVDI 435
>gi|300857299|ref|YP_003782283.1| foldase protein [Clostridium ljungdahlii DSM 13528]
gi|300437414|gb|ADK17181.1| foldase protein precursor [Clostridium ljungdahlii DSM 13528]
Length = 341
Score = 68.3 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/208 (15%), Positives = 73/208 (35%), Gaps = 6/208 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK--QEL 64
K + VA F+ V + + +STV +V +K+ Q L
Sbjct: 2 KNIKRLVAAAFITVFAFSTAGCNMIEKTPEAIANSTVATVNGEKITRGDLDKDPNTIQLL 61
Query: 65 GMISQKIGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI-A 120
Q+ G + + ++ILDN+++ ++Q +++ L D ++ ++
Sbjct: 62 SQAKQQYGSDYAKNDEATSAIKTQKEQILDNMITTKVIEQKAKELKLLPDESKLKSDMDK 121
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ ++ K F + L +G E+ + + L + + S + D
Sbjct: 122 KIDDIKKQNFKGDTSQFDAALKAQGFTEESFKTMFLAQLKTQAIETNISNYLAKSVKVTD 181
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + Y+ Y ++ A
Sbjct: 182 KQIKDYYNANKDKYTEQPDKMHLAHILV 209
>gi|260221806|emb|CBA30735.1| hypothetical protein Csp_C25050 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 728
Score = 68.3 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/173 (10%), Positives = 50/173 (28%), Gaps = 9/173 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
G V V + + F ++ ++Q+ E L + +L+ +++
Sbjct: 8 GDYIVAVVNSEPITFQELSIEVRRVSQQLTQQGQAAPAPEE-----LRRLVLERMINDKA 62
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q + G+ D + +G +LA++G+ + + D
Sbjct: 63 QLQLAREQGIRMDATAIDRAEQNVASQNGV----DVLALRQKLAKDGVTVQSFRDGLRDQ 118
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
L+ + + V + + + + D +
Sbjct: 119 LTLSRLHEREVESSIKVSDVDVDRAIQEQQANNTDPFAQELNIAQILIVVPEK 171
>gi|256751661|ref|ZP_05492536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
ethanolicus CCSD1]
gi|256749470|gb|EEU62499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermoanaerobacter
ethanolicus CCSD1]
Length = 301
Score = 68.3 bits (164), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 37/125 (29%), Gaps = 7/125 (5%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+ L + F+ + + + V V + + + + + Q I + +
Sbjct: 5 IALLLSFVFI-VFLTVSCSAEKDVVAVVNGENITNAEYKKVFDQVKAQIESSPQYTKDIW 63
Query: 79 RARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
G + + +LD+L++ L Q + + E + K
Sbjct: 64 DEDYQGKKFLDVVKENVLDSLIAEKLLVQEALKNNITVTDKEIEDEYQKQKEVSKDITKE 123
Query: 133 SHDVF 137
+
Sbjct: 124 DVKNY 128
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 34/263 (12%), Positives = 76/263 (28%), Gaps = 12/263 (4%)
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ F +VK I + + TK K+ + + I+ + +
Sbjct: 38 NAEYKKVFDQVKAQIESSPQYTKDIWDEDYQGKKFLDVVKENVLDSLIAEKLLVQEALKN 97
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+ K+++ + + + ++K D ++K+
Sbjct: 98 NITVTDKEIEDEYQKQKEVSKDITKEDVKNYLLINKLFDEYTKDVKVTEEELKKYYEDNK 157
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ E V K + + +G++F + K T +Q
Sbjct: 158 EQFETVKASHILVV---------DEKTAEDIYNRLMKGEDFATLAKEYSVDTATKDQGGD 208
Query: 537 MD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYL 594
+ + + VFS + P++ Y + K + P E KD SYL
Sbjct: 209 LGEFPHGVMVPEFDQVVFSLKKGEI-SKPVKTDYGYHIIKSDGVIIKPFDEVKDTIESYL 267
Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617
++ L+ +
Sbjct: 268 LDDKKNQVIIEKYDALEKAAKIQ 290
>gi|145300233|ref|YP_001143074.1| chaperone surA [Aeromonas salmonicida subsp. salmonicida A449]
gi|142853005|gb|ABO91326.1| chaperone surA [Aeromonas salmonicida subsp. salmonicida A449]
Length = 432
Score = 68.3 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 10/157 (6%)
Query: 15 KIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K + +L F + V + V S + Q++ +Q+ G
Sbjct: 3 KTLISLLTAGLFGAMSQGAFAAPELMDKVLAVVNKDVVLASQ-QEALVQKVKSSAQESGQ 61
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ + L K+ LD L+ + Q + GL+ ++ I DNK +
Sbjct: 62 SLPDD----ATLRKQALDRLIQESLQLQLADRQGLKISDTQLEQAIQSIAA----DNKMT 113
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
D ++LAREG+ +Y + + + +V V
Sbjct: 114 LDQLRAQLAREGLTYAQYREEVRREILMNEVRRNQVR 150
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 13/197 (6%), Positives = 50/197 (25%), Gaps = 6/197 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD- 485
G P + L + V++ ++ + EV
Sbjct: 232 GDWSWMSPQEMPTLMAEAVQGAAKGDIVGPLRSGAGLHIVKVFDAKGQQQVLQTEVKARH 291
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFF 544
+ + + E+ + ++ + F + + + Q + ++ +
Sbjct: 292 ILIKPSIILSEEKAKGMLDGILHDIKSGKATFASLAEKYSEDPGSAVQGGELGWSDPNVY 351
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT---QMMNKD 601
+ V + P + + ++ + K + +
Sbjct: 352 VPEFRDMVNRLKPGEL-SAPFRTTHGWHIVQLEERRSQDATSKAQEQRAYQLIFNRRFTE 410
Query: 602 LLDSVIAYLKSQYSVTV 618
+ + L+ + + +
Sbjct: 411 ESQAWLDELRDEAYIQI 427
>gi|311696171|gb|ADP99044.1| survival protein surA [marine bacterium HP15]
Length = 446
Score = 68.3 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 53/426 (12%), Positives = 117/426 (27%), Gaps = 65/426 (15%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + + + G + + L++++LD L++ +
Sbjct: 32 DQVVAIVDEDVILQTELEARINTITSRLGAQ-GTALPPRQV----LEERVLDQLITESIQ 86
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G+ + +A + N S F ++L EG+ + + K +
Sbjct: 87 MQMADRAGMRISDNELNETMANI----AERNGMSLPQFENQLEAEGVTYNQAREQIRKEM 142
Query: 160 SRTDVVGMFVGGM-RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ V VG R ++ ++ + ++ DPS+
Sbjct: 143 LTSRVQQRQVGNRVRVTDREVENYLESLEARGGNNAQYRLAYIFVSVDDPSDEAEVDAAR 202
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY-------------- 264
+ + R+ + V E + + ++ E
Sbjct: 203 EKAERLRSEIANGRDFREVAVAESDASNALEGGDMGWRAEGQLPSLVAPVVPELPVGEPS 262
Query: 265 -----------------------FSPEIRTVEQLVFPNQKEADEA---------FQSLKK 292
+ V ++ + ++ +Q L+
Sbjct: 263 DVLENNSGFHLVMVMDKRGGEQQQMIQQHRVRHILVRPSEATTDSQAETVIRDLYQQLQN 322
Query: 293 GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
G F LA E +LG S + + A G+ FG+
Sbjct: 323 GASFSALAREYSDDPVSGSDGGNLGWVSPGQMVPA--FEQAMLDADIGELRGPFRSQFGW 380
Query: 349 VIAHVSNIKPSF---TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
I V + V E ++ I + T+ ++E + DE +
Sbjct: 381 HILQVQERRQKDISGDVRDAEARQAIYRRKFETELQNWLQEIRDEAFVEFKGEYAKDEPA 440
Query: 406 RREKIV 411
E +
Sbjct: 441 EEEPVS 446
>gi|297537786|ref|YP_003673555.1| SurA domain-containing protein [Methylotenera sp. 301]
gi|297257133|gb|ADI28978.1| SurA domain protein [Methylotenera sp. 301]
Length = 448
Score = 68.3 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/458 (10%), Positives = 128/458 (27%), Gaps = 71/458 (15%)
Query: 5 IRKASRTWVAKI-----FLVVLFVPFLIWGLSDALFSVSG----SSTVVSVGRQKVPFSS 55
+R + V K + + + +++ + + V V + +
Sbjct: 1 MRTLIKHIVIKHSAIKHAIQFILLASVLFIGNQFNAQAADIVKLDRIVAIVDQTVITEQE 60
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ ++ +E L K+IL+ L++ Q+ IGL+ D ++
Sbjct: 61 LESRIATVTAQFKKQG-----TELPEESVLRKQILERLITDTLQIQYAAQIGLKVDDNQL 115
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR-- 173
+ R N + F LA++GI+ +++ ++ + V G
Sbjct: 116 DKTVERI----ADQNNLTLTEFSEALAKDGISMRKFRADIRNEITVARLREREVDGRVNV 171
Query: 174 ------------------------------------PSNLLLDQAKRFYFENRSVDYIVL 197
++ +AK ++ +
Sbjct: 172 SESEIDNYLTSQASLNENTDEFEISHILIRTPEEGATEDIQKAKAKVDEALSQLNSGVSF 231
Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
P+ K A + + + L+
Sbjct: 232 AKVSASFSDAPNALEGGSLGWKKGSQMPALFLDALKNMQAGEVSAPLRSPNGFHLLKLTN 291
Query: 258 EKNKEKYFSPEIRTVEQLV---------FPNQKEADEAFQSLKKGKKFIQLAEEQGKS-- 306
++ + ++ + + D + L G+KF LA + +
Sbjct: 292 KRGGNSPLVIQQTHARHILIKITEVMSDKEAETKIDAIKERLDNGEKFEVLARQFSEDST 351
Query: 307 -LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
+ L + ++ + K G + + FG+ I V + +
Sbjct: 352 ASNGGDLNWVNPGDTVPP--FENAMNALKDGQISAPVRSQFGWHIIQVMERRSQDMSK-E 408
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
+ ++R KA E ++ + L + + +++
Sbjct: 409 SARLKARQEIRARKADEAYQDWIRELRDRAYVELRLED 446
>gi|238795196|ref|ZP_04638783.1| Chaperone surA [Yersinia intermedia ATCC 29909]
gi|238725483|gb|EEQ17050.1| Chaperone surA [Yersinia intermedia ATCC 29909]
Length = 434
Score = 68.3 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 9/154 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + ++ + V V S + +Q+ G V +
Sbjct: 7 LILGLVVCANTAFAAPQEVDKVAAVVDNGVVLQSDVDGLLQSVKLN-AQQSGQQVPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ Q + +G+ + + IA N+ + SR
Sbjct: 64 --ATLRHQILERLIMDNIQLQMAKKMGITINDEALDKAIADIAA----QNRMTTAQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
LA +G+N Y + K + ++V V
Sbjct: 118 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRIT 151
Score = 42.2 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 29/371 (7%), Positives = 90/371 (24%), Gaps = 9/371 (2%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++ + K+ K +A + + + +
Sbjct: 58 QQVPDDATLRHQILERLIMDNIQLQMAKKMGITINDEALDKAIADIAAQNRMTTAQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ D + + + V ++ + +
Sbjct: 118 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I ++ + EE S + ++I D +
Sbjct: 178 HILIPLPENPSQQQVDQAEELATKLVSDIKSGADFGKLAI-ANSADSQALKGGQMGWGKL 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWK 491
L + + G + +++ + E +
Sbjct: 237 QELPSLFAERLQSANKGDVVGPIRSGVG-FHILKVNDIRGADKTISVTEVHARHILLKPS 295
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGIS 550
V T ++ +K + +F I K + + Q + +
Sbjct: 296 PVMTDDQARTKLAAAAADIKSGKSSFATIAKEISQDPGSAVQGGDLGWASPDIYDPAFRD 355
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ + P+ + + + +V + +KD+ L + + +
Sbjct: 356 ALMKLQKGEI-SAPVHSSFGWHLIQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWM 414
Query: 608 AYLKSQYSVTV 618
++ V +
Sbjct: 415 QEQRAAAYVKI 425
>gi|39995126|ref|NP_951077.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Geobacter sulfurreducens PCA]
gi|39981888|gb|AAR33350.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
gi|298504156|gb|ADI82879.1| peptidylprolyl cis-trans isomerase, PpiC-type, SurA family
[Geobacter sulfurreducens KN400]
Length = 321
Score = 68.3 bits (164), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/182 (14%), Positives = 60/182 (32%), Gaps = 7/182 (3%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
++ L + S + V + V + + L ++ + L
Sbjct: 12 VVLTLPSLSSAEVVSRILAVVNDEIVTSYAVDKEKRALLKEAERQ---QPPPDPKSLANL 68
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
D+ L+ L+ ++Q I ++ + V I + NK S + V+ LA +G
Sbjct: 69 DEVALNRLIDKKLVEQKIRELDIRVGEEEVRQAIEDVK----RQNKLSQEALVAALANQG 124
Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
++ +Y + L R +V V + + + + R++
Sbjct: 125 LSFDQYKAQIKEQLERLRLVSQEVRSKIQVGEREMREYYEANKAKFGAEDIFRARNIYFK 184
Query: 206 AD 207
D
Sbjct: 185 LD 186
Score = 38.7 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 30/288 (10%), Positives = 80/288 (27%), Gaps = 9/288 (3%)
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
+ + ++ +P ++A I K + K +
Sbjct: 38 TSYAVDKEKRALLKEAERQQPPPDPKSLANLDEVALNRLIDKKLVEQKIRELDIRVGEEE 97
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
E +R+ +S + LV + KEQL + SK
Sbjct: 98 VRQAIEDVKRQNKLSQEA-LVAALANQGLSFDQYKAQIKEQLERLRLVSQEVRSKIQVGE 156
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
Y + + + + + + +++ VL ++ GK+F
Sbjct: 157 REMREYYEANKAKFGAEDIFRARNIYFKLDDKMSAEQVKKVMTTAMT--VLHEAQSGKDF 214
Query: 518 RDIGKNLGASLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
++ + N + + Q+ V + K+
Sbjct: 215 AELARQYSDDPAAKGNGGDLGTFRKGDILPEFEEQLTRMQPGEVSDLIY-TATGLHIVKL 273
Query: 577 TNSKVGPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYSVTVHD 620
+G + ++ + + + ++D + +A L+ ++ +
Sbjct: 274 EERSLGTPKPFEQVKAEVEDLVYRKKSEDRFNQWVADLRKGAAIELRQ 321
>gi|312142429|ref|YP_003993875.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium sp.
'sapolanicus']
gi|311903080|gb|ADQ13521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium sp.
'sapolanicus']
Length = 340
Score = 68.0 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 14/215 (6%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDAL------FSVSGSSTVVSVGRQKVPFSSFI-----NSW 60
K V+ + FL++ +S S+ + V +++ N
Sbjct: 2 IFIKKVFVLTAIIFLVFSMSAMAQNIENTMSLDQTGPAAVVNGEEISRQELEGFAALNEI 61
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKI---LDNLVSGATLDQFIEDIGLEADHGRVWG 117
++ +Q+ G V+ + +++ + LD L+S + Q ++ GLE +
Sbjct: 62 LMDILQSNQEFGTVLLQTESGQELIEEFMRYKLDQLISTKLMVQEAKNRGLEVSDQEINQ 121
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + + N + L +EG + + + +
Sbjct: 122 IIDQQIAGIKQQNNLNDQQLEMALQQEGFASLDEYKSLLIESNMDRFFIEKLRTDITEEI 181
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ A+ F N + + + + + A
Sbjct: 182 TISDAEVEEFYNENQAQFAIPAEYRISHILFNEAD 216
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/278 (11%), Positives = 89/278 (32%), Gaps = 20/278 (7%)
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL--- 417
Q ++ ++ E ++E + + L M + ++ + D +
Sbjct: 63 MDILQSNQEFGTVLLQTESGQELIEEFMRYKLDQLISTKLMVQEAKNRGLEVSDQEINQI 122
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI-KESIPARD 476
+D +K + E L + K + + ++ +
Sbjct: 123 IDQQIAGIKQQNNLNDQQLEMALQQEGFASLDEYKSLLIESNMDRFFIEKLRTDITEEIT 182
Query: 477 RKLEEVLT---------DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL--G 525
EV + +++ + KA +++ + + G +F ++ K G
Sbjct: 183 ISDAEVEEFYNENQAQFAIPAEYRISHILFNEADKAEEVLTQI-ESGADFAEMAKEHSIG 241
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-- 583
+ + + +++ ++ V V P+E + + K+T+ + G
Sbjct: 242 PTAENGGDLGFIAADDRGIDAVFLNAAKELEVGQVSESPVETQFGFHIIKITDYRDGSSR 301
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
+ KD+ + L + I L+ +T++
Sbjct: 302 EFAEIKDELKEEMLSQRANQLWNEFIIGLREDAEITIN 339
>gi|330863030|emb|CBX73162.1| chaperone surA [Yersinia enterocolitica W22703]
Length = 424
Score = 68.0 bits (163), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 44/135 (32%), Gaps = 9/135 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V S + +Q+ G V + L +IL+ L+
Sbjct: 16 DKVAAVVDNGVVLQSDVDGLLQSVKLN-AQQAGQQVPDD----ATLRHQILERLIMDNIQ 70
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + +G+ + IA N+ + SRLA +G+N Y + K +
Sbjct: 71 LQMAKKMGITISDEALDKAIADIAA----QNRMTPAQMRSRLAADGLNYDTYREQIRKEM 126
Query: 160 SRTDVVGMFVGGMRP 174
++V V
Sbjct: 127 LTSEVRNNEVRRRIT 141
Score = 37.5 bits (84), Expect = 7.1, Method: Composition-based stats.
Identities = 29/371 (7%), Positives = 89/371 (23%), Gaps = 9/371 (2%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++ + K+ K +A + + + +
Sbjct: 48 QQVPDDATLRHQILERLIMDNIQLQMAKKMGITISDEALDKAIADIAAQNRMTPAQMRSR 107
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ D + + + V ++ + +
Sbjct: 108 LAADGLNYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQIGNQTSGDAELNLS 167
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I ++ + E+ S + ++I D +
Sbjct: 168 HILIPLPENPSQQQVDQAEDLAKKLVSDIKGGADFGKLAI-ANSADSQALKGGQMGWGKL 226
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWK 491
L + G + +++ + E +
Sbjct: 227 QELPSLFAERLQSASKGDVVGPIRSGVG-FHILKVNDIRGTDKTISVTEVHARHILLKPS 285
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGIS 550
V T ++ +K + NF I K + + Q + +
Sbjct: 286 PVMTDDQARAKLTAAAADIKSGKANFATIAKEISQDPGSAMQGGDLGWASPDIYDPAFRD 345
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ + P+ + + + +V + +KD+ L + + +
Sbjct: 346 ALMKLQKGEI-SAPVHSSFGWHLIQVVDTRQVDKTDAAQKDRAYRMLFSRKFAEEAQTWM 404
Query: 608 AYLKSQYSVTV 618
++ V +
Sbjct: 405 QEQRAAAYVKI 415
>gi|171060582|ref|YP_001792931.1| SurA domain-containing protein [Leptothrix cholodnii SP-6]
gi|170778027|gb|ACB36166.1| SurA domain [Leptothrix cholodnii SP-6]
Length = 464
Score = 68.0 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 10/140 (7%)
Query: 16 IFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+ + +L + G + + V V R+ V S ++ ++ V
Sbjct: 37 LVVSLLMLGLAPASGSAQEGSRQNADYIVAVVNRELVTNSEVQQRVERLEQEAARANAQV 96
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ + L + +LD L+ + GL D + +A N+ +
Sbjct: 97 PSRD-----ALQRDVLDQLIDERAQLGVARESGLRIDDAELDRTVASVAA----QNQLTV 147
Query: 135 DVFVSRLAREGINEKEYIDH 154
RL +G++ + D+
Sbjct: 148 AEMRERLRADGLDYPRFRDN 167
>gi|74318356|ref|YP_316096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
denitrificans ATCC 25259]
gi|121956487|sp|Q3SGF9|SURA_THIDA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|74057851|gb|AAZ98291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiobacillus
denitrificans ATCC 25259]
Length = 436
Score = 68.0 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/404 (11%), Positives = 104/404 (25%), Gaps = 61/404 (15%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + + + + + +S++ + L+K++L+ +V+ L Q
Sbjct: 38 IVAVVNDEVITRQELAKRYDEVVRNLSRQ-NTPLPP----RNVLEKQLLERMVTELALQQ 92
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G+ AD V + R NK + L +EG + L
Sbjct: 93 HARNTGVRADPTLVERALQRIAA----QNKLDMAGLQAALEKEGQTLDGMRNTIRNELLI 148
Query: 162 TDVVGMFVGGMR-PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ----- 215
V S+ +D + + + ++ V + S + +
Sbjct: 149 ARARERDVDNRISVSDAEIDGYLQTQAQQGAETEYNFSHILVSVPENASPEQIRERRARA 208
Query: 216 -------------------------------------------WFEKYKDNYRAPEYKRI 232
+ E K +
Sbjct: 209 EDILAQLAAGADFAQLSASHSDAPDALKGGNFGWRASGKLPALFVEALKPMQPGEISPLL 268
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
K + L + T E + E + K
Sbjct: 269 RSGNGFHILKLVDKRGLDATLSVTQTHARHILIKTNEITSEADARNRLLQLKERIDNGVK 328
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+ +L E + LG + + + + G+ + + FG+ +
Sbjct: 329 FDELARLHSEDASASKGGDLGWINPGDTVPD--FEKAMNALQPGEVSAPVQSPFGWHLIQ 386
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
V + + K +R KA E ++ +++ +
Sbjct: 387 VLERRDQDVTQ-ERQKLMARQAIRERKAEEAFQDWVRQIRDAAY 429
>gi|162451238|ref|YP_001613605.1| foldase protein prsA precursor [Sorangium cellulosum 'So ce 56']
gi|161161820|emb|CAN93125.1| Foldase protein prsA precursor (EC 5.2.1.8) [Sorangium cellulosum
'So ce 56']
Length = 605
Score = 68.0 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 71/625 (11%), Positives = 159/625 (25%), Gaps = 107/625 (17%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
+G++ V V + F S + R R++G + + L
Sbjct: 32 QSAGNTCAVEVRGSCISSIDFNASKNLLAMR-------SPDENRLRAMGYRRLTAEGLYE 84
Query: 96 GATLDQFIEDIGLEADHGRV----------------------------WGEIARSPLFHG 127
L++ + +G+ + I + +
Sbjct: 85 RWLLNEDAKRLGITVSDDELTSELVAGRVHVSLPADKIRQVGYALSLREDLIRYLDVRNR 144
Query: 128 KDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ KF + + ++ ++ ++ ++ K L + + +R +
Sbjct: 145 QTKKFDNKQYEKQIRNITKMSPTDFREYQRKELIAARMRELIRARVRVGENEAFEQFSRE 204
Query: 187 FENRSVDYIVLNNRHVPA-IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
R++ Y+ + R I D S + W + K+ R + +
Sbjct: 205 KSTRTLAYVRFDRRFYSDLIVDTSEKAIQAWADNNKEELDKAWEGRKAQYQPECRVARVL 264
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
E + + + I Q + + + A +
Sbjct: 265 AVEVRPEEAEQGPEAGKAAAKARIEGAVQ-----------RLKKGESFADVARSASDDPS 313
Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
+ LG +K + + K GD + +I G+ + + I
Sbjct: 314 AARGGELGCVAKGRLSKP--VEDKLFEMKAGDVSDLIETEDGFHVIKLEQIAKDAEAEKI 371
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
++ + ++ E K++ A G S+++ + A
Sbjct: 372 GRQETARDLYIAHESERLAAEAAKQVLAAAAGGKSLEDALAAYMAQLTPANSKEKASAKE 431
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
G A + G D +K+ A Y
Sbjct: 432 GGAAPGAKAGGGAAAGKQDGDKDAGAKEGGQAEARAPYTIA------------THPNRPT 479
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
V+ ++ G D + +I ++
Sbjct: 480 VETSLP------------------FNVSGSPIADARDS-----TEAARIAFQLDKPGDLP 516
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKD 601
D ++ Y V ++ ++ DK + T M D
Sbjct: 517 KDVVALA----------------NGYAVIQLKEKTSASQEQWDKDREFYTSAMRAAKQND 560
Query: 602 LLDSVIAYLKSQ--YSVTVHDNLIQ 624
L + LKS V NL++
Sbjct: 561 ALIGYVRRLKSTIGSEVKYDQNLLK 585
>gi|33603075|ref|NP_890635.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
bronchiseptica RB50]
gi|81714068|sp|Q7WG19|SURA_BORBR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|33568706|emb|CAE34464.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
bronchiseptica RB50]
Length = 519
Score = 68.0 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 9/135 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + + K + ++ G V E L K++L L+
Sbjct: 55 DGIAAIVNKDVITLREVREASKLASADLQKR-GIQVPDE----RTLQKQVLQRLIMERLE 109
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + +G+ D +V I NK + + + + G+ ++Y +
Sbjct: 110 RQEADRMGIRVDEAQVDQAINMIAS----RNKITPAAMRAEIEKSGVTWEQYRKSLRDDI 165
Query: 160 SRTDVVGMFVGGMRP 174
+ V
Sbjct: 166 RMDRLRQRAVDANII 180
>gi|304413706|ref|ZP_07395150.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus Regiella
insecticola LSR1]
gi|304283797|gb|EFL92191.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus Regiella
insecticola LSR1]
Length = 434
Score = 68.0 bits (163), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 52/152 (34%), Gaps = 9/152 (5%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+L + +I+ + S + V + + S + Q +
Sbjct: 5 GMLILSMVIFTHAGFAASQQTDKSAAIVNSKVILQSDIDTLLQSVKFSAEQ-----ADQP 59
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
L +I+++L+ Q + +G+ + IA N + D
Sbjct: 60 IPDEKQLRHQIIESLIMNDIQLQMAQKMGMTISESHLDNAIANIAA----QNHMTIDQLR 115
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
SRLA+EGIN + Y H + ++V V
Sbjct: 116 SRLAKEGINYQTYRTHIRNEMQISEVRNNEVR 147
Score = 38.7 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 19/238 (7%), Positives = 68/238 (28%), Gaps = 7/238 (2%)
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
K E A + S + D + + +L
Sbjct: 190 QQKDQAEKKAEKIVAEIKSDKSFAKLAIAHSSDSQALKGGQMGWSKLAELPRLFAEQLKT 249
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQ 505
+ + G ++ + + E+ + + T ++ +K
Sbjct: 250 ANKRDIIGPIRSGVGFHILKVNDIRKADKKISITEMRVRHILLKPSVMMTDKQAQAKLQS 309
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD--NENKFFGYDGISQVFSGPVEMVKCF 563
+ + +F + + + + Q + + + + ++++ S +
Sbjct: 310 VRQKIKSGKTDFAAVAREISEDPGSAQQGGDLGWISPDDRYDPTFLNELASLKKGAI-SP 368
Query: 564 PIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P+ + L + + ++ + K++ L + + L + +++ V +
Sbjct: 369 PVRSSLGWHLIQLIDSRTVDRTDEMLKEQAYRMLIKRKFSEELQPWMQEIRAAAYVKI 426
>gi|294338549|emb|CAZ86878.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase, surA
[Thiomonas sp. 3As]
Length = 472
Score = 67.6 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 9/140 (6%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S + + VG Q + + +Q G + S + L ++L
Sbjct: 58 STFSSARTSDGIAAIVGNQVITDYDLQLRVEATRQQ-AQAAGATLPS----AAQLRSQVL 112
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ ++ L Q+ E IG+ + + IA+ +NK + S + +EG+
Sbjct: 113 NQMIDEVALAQYAEQIGMGVNQDTLDRAIAQVAS----NNKLTVPELRSAIEKEGMGWST 168
Query: 151 YIDHYTKMLSRTDVVGMFVG 170
Y D + + + + +
Sbjct: 169 YRDQLKREILISRLRERSMA 188
>gi|114331215|ref|YP_747437.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
eutropha C91]
gi|114308229|gb|ABI59472.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
eutropha C91]
Length = 424
Score = 67.6 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 55/476 (11%), Positives = 134/476 (28%), Gaps = 76/476 (15%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + + + + ++ + + E L+K++L+ L+
Sbjct: 21 DRIVAVVNEEVITQQETNELLQNTIQQLQKQNIQLPSME-----VLEKQLLERLIIKRIQ 75
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q +++GL + + R +DN + D F L +EG N + D +
Sbjct: 76 LQRAKEVGLSVSDNDLDQTLRRI----VQDNHLTMDEFRQVLLQEGTNLSLFRDEIRDEI 131
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + + + + + + + E
Sbjct: 132 LMSRLKEQEINSR---------------------------------VNVTESEIDNFLEN 158
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
++ A E RI++IL E+ + +I+ +A
Sbjct: 159 QANSPAANEEYRIAHILVQTSEQMDEAQINTRHKRA------------------------ 194
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
+ A E + + + ++ LG I + + G+ T
Sbjct: 195 -EAAYEDLRQGISFAQVSAEYSDATDAMQGGELGWRPLGQIGSP--FAELLLQMQPGEIT 251
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
PV+ G+ I + + + + + ++ ++ +++ +
Sbjct: 252 PVVRSPIGFHILKLLERRQQEKSVTIIEQTHAQHILIKVSEIISEEDAHQLIDQIMERIH 311
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + K S D + + + P V
Sbjct: 312 NGADFMEMAKAHSE-----DASASAGGDLGWVSPGDTVPEFEQAMNALLPGQISQPVRTS 366
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
G ++ I+ ++D ++ +K K QL + E K
Sbjct: 367 FGWHLIKVIE--RRSQDVSEQKQRETARKTIHARKADAVTQEWLQQLRDQAYVEYK 420
Score = 38.3 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 21/240 (8%), Positives = 62/240 (25%), Gaps = 6/240 (2%)
Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ ++ + + +++ + + D G+ + F
Sbjct: 180 EQMDEAQINTRHKRAEAAYEDLRQGISFAQVSAEYSDATDAMQGGELGWRPLGQIGSPFA 239
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT--VKTAEEVS 500
+ V + +++ E T + +EE +
Sbjct: 240 ELLLQMQPGEITPVVRSPIGFHILKLLERRQQEKSVTIIEQTHAQHILIKVSEIISEEDA 299
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+ ++E G +F ++ K + + + Q + +
Sbjct: 300 HQLIDQIMERIHNGADFMEMAKAHSEDASASAGGDLGWVSPGDTVPEF-EQAMNALLPGQ 358
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDK---FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P+ + + KV + V E+ + + + + L+ Q V
Sbjct: 359 ISQPVRTSFGWHLIKVIERRSQDVSEQKQRETARKTIHARKADAVTQEWLQQLRDQAYVE 418
>gi|121997812|ref|YP_001002599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halorhodospira
halophila SL1]
gi|121589217|gb|ABM61797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halorhodospira
halophila SL1]
Length = 427
Score = 67.6 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/196 (12%), Positives = 60/196 (30%), Gaps = 9/196 (4%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
L L+ GL S + V ++ V S +Q Q+ ++
Sbjct: 5 AFLCAATLLAGLPTLAASETLDRIVAVADQEVVLASELDQEIEQIRAQFFQRGQQPPPAD 64
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
+ L +++L+ LV + G++ D + + R N +
Sbjct: 65 Q-----LREQVLERLVMQRLQMGHAQGAGIQVDDATLDAAMQRIAA----QNNMTLAQLR 115
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
LA+EG++ + + + ++ + V + + + +
Sbjct: 116 DALAQEGMDMASFREDLREQITVERLQQAVVQQEVEVSPQEIEEAVEAAAAQDNMEYRVA 175
Query: 199 NRHVPAIADPSNAVLT 214
+ + S+ L
Sbjct: 176 HIRIGTPEGASSDDLR 191
Score = 48.3 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 33/348 (9%), Positives = 97/348 (27%), Gaps = 7/348 (2%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
E+LV + ++ + A ++ + ++++L + S
Sbjct: 72 ERLVMQRLQMGHAQGAGIQVDDATLDAAMQRIAAQNNMTLAQLRDALAQEGMDMASFRED 131
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
++ + + VS + V + ++ ++ + L
Sbjct: 132 LREQITVERLQQAVVQQEVEVSPQEIEEAVEAAAAQDNMEYRVAHIRIGTPEGASSDDLR 191
Query: 393 EFLALGTSMDEISRREKIVSIDLPLV--DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
+ E + + L D A GK +P + F
Sbjct: 192 AAGERAGQIREQAVDGESDFATLAETFSDAATASEGGKIGWRLPGQLPSAFADVVDGLEP 251
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
+ + V++ + + +EE E+ + E
Sbjct: 252 GEISEPVQAADGFHIVKLIDRRSEDAQIVEETRARHILLRPGDGVEEDDVRQRLDSFRER 311
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
EG++F + + + + ++ V V P
Sbjct: 312 IDEGESFEFLARQYSEEPGAEASGGDIGWTRSGQLVASFQERMDELEVGEV-SEPFRTEY 370
Query: 570 SYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ + +V + + V + +++ + + +++ L+ + L+ +
Sbjct: 371 GWHIVRVEDRRERDVTDDRRRERIAQQIHERKSQEALEQWLRQLREEA 418
>gi|117617860|ref|YP_855486.1| peptidylprolyl cis-trans isomerase SurA [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117559267|gb|ABK36215.1| peptidylprolyl cis-trans isomerase SurA [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 432
Score = 67.6 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 10/157 (6%)
Query: 15 KIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K + +L F + V + V S + Q++ +Q+ G
Sbjct: 3 KTLISLLTAGLFGAMSQGAFAAPELMDKVLAVVNKDVVLASQ-QEALVQKVKASAQESGQ 61
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ + L K+ LD L+ + Q + GL+ ++ I DNK +
Sbjct: 62 SLPDD----ATLRKQALDRLIQESLQLQLADRQGLKISDTQLEQAIQSIAA----DNKMT 113
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
D ++LAREG+ +Y + + + +V V
Sbjct: 114 LDQLRAQLAREGLTYAQYREEVRREILMNEVRRNQVR 150
Score = 42.2 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 12/197 (6%), Positives = 51/197 (25%), Gaps = 6/197 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD- 485
G P + L + +++ ++ + EV
Sbjct: 232 GDWGWMSPQEMPTLMAEAVQGTKKGDIVGPLRSGAGLHIIKVFDTKGQQQVVQTEVRARH 291
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFF 544
+ + + E+ + ++ + +F + + + Q + ++ +
Sbjct: 292 ILIKPSIILSEEKAKGMLDGILHDIKSGKASFASLAEKYSEDPGSAVQGGELGWSDPNVY 351
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT---QMMNKD 601
+ V + P + + ++ + K + +
Sbjct: 352 VPEFRDMVNRLQPGQI-SEPFRTTHGWHIVQLEERRSQDATNKAQEQRAYQLIYNRRFTE 410
Query: 602 LLDSVIAYLKSQYSVTV 618
+ + L+ + + +
Sbjct: 411 ESQAWLDELRDEAYIQI 427
>gi|254498443|ref|ZP_05111173.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
drancourtii LLAP12]
gi|254352330|gb|EET11135.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
drancourtii LLAP12]
Length = 421
Score = 67.6 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 21/182 (11%), Positives = 53/182 (29%), Gaps = 9/182 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + + + + + K++L +L+
Sbjct: 15 DKVVAVVNNSVITASELDKQVAMAKKQLLAQ-RIQLPPDSV----VRKQVLQHLIDVDLQ 69
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G+ D + I R + + + ++G+ EY ++ K +
Sbjct: 70 LQMAKQHGISVDDTELTQAIERIAAANHATLSQMREE----IVKQGMGWNEYRENIRKEM 125
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+++ VG + + VD L + ++ +K
Sbjct: 126 ILSNLQQKAVGHDVMITNEQVEQYLKTEGDLPVDRTHLTYHLQNIVIPLNDEPTPAQMKK 185
Query: 220 YK 221
+
Sbjct: 186 AQ 187
>gi|241765841|ref|ZP_04763778.1| SurA domain protein [Acidovorax delafieldii 2AN]
gi|241364240|gb|EER59412.1| SurA domain protein [Acidovorax delafieldii 2AN]
Length = 466
Score = 67.6 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 11/187 (5%)
Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
G AL S V V + V + + ++Q+ G + L ++
Sbjct: 52 GTGSALRS--ADFIVAVVNSEPVTNNEVRARAVRVEQQMAQQ-GSPLPPRDL----LARE 104
Query: 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
+L+ L+ Q + G+ D V K N+ S D RLA +GI++
Sbjct: 105 VLERLIVEKIQLQLAREGGIRVDDYAVGQAEESV----AKQNRVSVDEMHRRLAADGISK 160
Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + L + V + L + + + N + P
Sbjct: 161 ERFREELRNQLLLLRLRERDVQSRVRVSDLDVDQYLREQQAGADASKLEINLGHILVVVP 220
Query: 209 SNAVLTQ 215
NA Q
Sbjct: 221 ENATPQQ 227
Score = 43.7 bits (100), Expect = 0.084, Method: Composition-based stats.
Identities = 29/355 (8%), Positives = 98/355 (27%), Gaps = 12/355 (3%)
Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS----LGSFSKEYIPDVSLADSIF 330
+ +E G+ +A++ S+ ++ SKE + +
Sbjct: 114 IQLQLAREGGIRVDDYAVGQAEESVAKQNRVSVDEMHRRLAADGISKERFREELRNQLLL 173
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
++ D + S V ++ + S E+ + A+ + E+ +
Sbjct: 174 LRLRERDVQSRVRVSDLDVDQYLREQQAGADASKLEINLGHILVVVPENATPQQVEERRV 233
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
+ A E D +G + + P +L +
Sbjct: 234 RAQQAADKVRAGEDFAAVAREFSDAAEAKTSGGLLGLRPADRYP---ELFVSATAQLPLG 290
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLE 509
V P G ++ + ++ + + T +++
Sbjct: 291 GIAGPVRSPAGFHVLKLVDKTSAGVPTVAIQSHARHILLRTGPQLTESAAAARLADYRRR 350
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
+F ++ + + + + + + + V P+ +
Sbjct: 351 VLAGQADFAELAREHSQDGSAKQGGDLGWSNPGRYVPEFEQAMNALKPGDV-SEPLVSRF 409
Query: 570 SYVVFKVTNSKVGPVQEKDK---FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ ++ + + ++++ + + ++ + + L+ + V +
Sbjct: 410 GVHLIQLLERRETKLTQREQRDMARDTVREKKVEEAFANWMQELRGRAYVEYREA 464
>gi|289209139|ref|YP_003461205.1| peptidylprolyl isomerase [Thioalkalivibrio sp. K90mix]
gi|288944770|gb|ADC72469.1| Peptidylprolyl isomerase [Thioalkalivibrio sp. K90mix]
Length = 475
Score = 67.6 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/409 (7%), Positives = 103/409 (25%), Gaps = 64/409 (15%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
+ VG V + + ++ + + L +++++ L+
Sbjct: 68 QFTDRILAVVGDDVVTQRELVERMNLVAQQMMERGTRPPDRD-----TLARQVMERLIVE 122
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
Q + +G+ D + + ++N+ + L ++G++ + +
Sbjct: 123 RVQLQEAQRVGINIDEMTLNRAMENI----ARENRMTLPQLRQALLQDGVDFNAFREQIR 178
Query: 157 KMLSRTDVVGMFVGGMR-PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
L+ + V S+ + ++ +++
Sbjct: 179 NELTVNQLQRRQVDNQIRVSDQEIADLIASESGAIDRGVRYRIAHIQVSLPRGADSGQIA 238
Query: 216 WFEKYKDNYRAPEYKRISYI------------------------------------LFDV 239
+ R + + +
Sbjct: 239 TAREKARELRQRVREGEDFASVAISESDAPDALEGGDLGWRTAGEIPSVFAREAVLMRTG 298
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------FQSL 290
+ + + ++ V ++ + + + +
Sbjct: 299 EISDVLRSPNGFHIMKLVDREGGDQTRVRQTQVRHILISPDQVRSDEEARRQAESLYNRI 358
Query: 291 KKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
++G F LA LG S + ++ + + G+ + + F
Sbjct: 359 REGSDFEALARANSDDPGSAAQGGQLGWISPGELV-PEFEEA-MNALQPGEISEPVESQF 416
Query: 347 GYVIAHVSNIKP---SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G+ I V + + S ++ + N+ R + ++
Sbjct: 417 GWHIIEVLDHREVDTSREQIRARAREILQNRKREEEIELWMRRLRDEAY 465
>gi|33594222|ref|NP_881866.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
Tohama I]
gi|81713229|sp|Q7VU12|SURA_BORPE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|33564297|emb|CAE43595.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
Tohama I]
gi|332383636|gb|AEE68483.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
CS]
Length = 519
Score = 67.6 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 9/135 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + + K + ++ G V E L K++L L+
Sbjct: 55 DGIAAIVNKDVITLREVREASKLASADLQKR-GIQVPDE----RTLQKQVLQRLIMERLE 109
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + +G+ D +V I NK + + + + G+ ++Y +
Sbjct: 110 RQEADRMGIRVDEAQVDQAINMIAS----RNKITPAAMRAEIEKSGVTWEQYRKSLRDDI 165
Query: 160 SRTDVVGMFVGGMRP 174
+ V
Sbjct: 166 RMDRLRQRAVDANII 180
>gi|296134602|ref|YP_003641844.1| SurA domain protein [Thiomonas intermedia K12]
gi|295794724|gb|ADG29514.1| SurA domain protein [Thiomonas intermedia K12]
Length = 459
Score = 67.6 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 50/140 (35%), Gaps = 9/140 (6%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S + + VG Q + + +Q G + S + L ++L
Sbjct: 45 STFSSARTSDGIAAIVGNQVITDYDLQLRVEATRQQ-AQAAGATLPS----AAQLRSQVL 99
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ ++ L Q+ E IG+ + + IA+ +NK + S + +EG+
Sbjct: 100 NQMIDEVALAQYAEQIGMGVNQDTLDRAIAQVAS----NNKLTVPELRSAIEKEGMGWST 155
Query: 151 YIDHYTKMLSRTDVVGMFVG 170
Y D + + + + +
Sbjct: 156 YRDQLKREILISRLRERSMA 175
>gi|222056243|ref|YP_002538605.1| hypothetical protein Geob_3161 [Geobacter sp. FRC-32]
gi|221565532|gb|ACM21504.1| conserved hypothetical protein [Geobacter sp. FRC-32]
Length = 580
Score = 67.6 bits (162), Expect = 6e-09, Method: Composition-based stats.
Identities = 64/586 (10%), Positives = 146/586 (24%), Gaps = 84/586 (14%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V +VG V F S L + Q+ G ++ + +L+ L++ + Q
Sbjct: 63 PVATVGDDVVTMEEFNQS----LAALHQRAGEDESAGKKDY----NIVLNRLINSKLIVQ 114
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
E++GL A P K F L + I + + + T+ +
Sbjct: 115 EAENMGL-----------ADLPEVKEKLEDFPRMAIKEELKEQQIKDLKPAEADTERFYK 163
Query: 162 TDVVGMFVGG-MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
V + V + R + D + + + E
Sbjct: 164 EAVKELKVKSVRFDKEDDAKELARAVQAGGNFDELANSLIESGKATGVKEGEFVKAKELL 223
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
R+ I V + ++++ Y + ++ E
Sbjct: 224 PQVAHIVSSLRVGGISPVVQVGPAYTILKLEDIR---------YPADDMEAREAAREQAL 274
Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ G + A+ ++ + + + K
Sbjct: 275 ALKQLQVLTEYNGMLVKKYAK-------------IDRKLLDKLDFESAKPGFDKLLKDKR 321
Query: 341 VIHGSFGYVIAHVSNIKPS-FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
VI G V+++ F VK+ + + + + + +
Sbjct: 322 VIATIKGDKPITVADLGEMLKQKFFHGVKEAAKGKRINEQKMPALYDIFYARLYPMEAKK 381
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ + K D G ++ + I ++ + +
Sbjct: 382 LGLDKTESYKNRIKDFRDSLLFGMFIQKVVASEIKVTDEEIKAHYNA------------- 428
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
E ++ ++ A + + K +
Sbjct: 429 ----------EIDEFSLPEMLKLRGLAFTR----------KDFAEAAMEKLQKGTEYQWL 468
Query: 520 IGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
G T ++ K + + + F G YV+ +V
Sbjct: 469 QANAEGLVPGDTEGLMSFSQTPVTRKSLPEKMQEAIAAAKPGEYRLFETPEGFVYVI-QV 527
Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTV 618
Q ++ +T+ + L+ L+ Y V V
Sbjct: 528 QEVIPAKPQPLEQVKQSITKEVFNQKLNKSVEDWGQKLREAYKVQV 573
>gi|258513569|ref|YP_003189791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
acetoxidans DSM 771]
gi|257777274|gb|ACV61168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfotomaculum
acetoxidans DSM 771]
Length = 327
Score = 67.6 bits (162), Expect = 7e-09, Method: Composition-based stats.
Identities = 12/116 (10%), Positives = 39/116 (33%), Gaps = 2/116 (1%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNL 93
+ ++ V +V +++ ++ G + + A+ + + +LD +
Sbjct: 18 TGCNTNVVATVNGEEITQQQLDKRVSIVKDYYEKQYGQKIEGQDAQKLIDNMKPGLLDEM 77
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
+S Q +G + ++ +I + F + + L + +
Sbjct: 78 ISDTLKRQEARKVGKDMTDQQIQEKIDGVKKQFPNEEAFKNFLAQQDLTEKDMAYM 133
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/258 (12%), Positives = 74/258 (28%), Gaps = 21/258 (8%)
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
E+ D + K + + + + + +E + + + DL D
Sbjct: 74 LDEMISDTLKRQEARKVGKDMTDQQIQEKIDGVKKQFPNEEAFKNFLAQQDLTEKD---- 129
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
+A + + ++ + + + E +
Sbjct: 130 ------MAYMLNLQDVVLKDVKAPTEEEVQEYYDQNKEQFKTAEQYEVRHILISTDPDDA 183
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
+VK T E A Q++ + K GK+F + + L + + +
Sbjct: 184 GNVKH------TEAEAEKLAVQVLADI-KNGKDFAALAREKSEDLGSKDNGGLYTFKKGD 236
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMN 599
+ + P++ Y + K+ + KD L Q
Sbjct: 237 TVPEFEKAALALKPGEYTREPVKTQFGYHIIKLEKLIPARDQSFAEVKDGIKQQLDQEAK 296
Query: 600 KDLLDSVIAYLKSQYSVT 617
K+ ++ + LK + +T
Sbjct: 297 KNKFNAYLEDLKKKAKIT 314
>gi|238918641|ref|YP_002932155.1| peptidyl-prolyl cis-trans isomerase SurA [Edwardsiella ictaluri
93-146]
gi|238868209|gb|ACR67920.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 434
Score = 67.6 bits (162), Expect = 7e-09, Method: Composition-based stats.
Identities = 50/426 (11%), Positives = 117/426 (27%), Gaps = 61/426 (14%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + + + V V V S K +Q+ G + +
Sbjct: 7 LILGVALCANTAFAAPQVVDKVVAIVDNGVVLESDVDGMMKSVKLN-AQQAGQQLPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ Q + +GLE + I + N S SR
Sbjct: 64 --ATLRHQILERLIMDNVQLQMAKRMGLEISDSELDNAINGI----AQQNHISMQQLRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY--FENRSVDYIVLN 198
LA +G++ K Y D K + ++V V A +N + L+
Sbjct: 118 LAADGLDYKTYRDQIRKEMLISEVRNNEVRSRVTILPQEVDALAKQIGSQNSGETAVNLS 177
Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
+ +P +P+ +++ ++ + + L + + + + +
Sbjct: 178 HILIPLPENPTQQQVSEAQKQAESLIQQLHQGASFAKLAAAYSADPQALKGGEMGWGRLQ 237
Query: 259 KNKEKYFSPEIR------------------------------------TVEQLVFPNQKE 282
+ + ++
Sbjct: 238 ELPTLFAEALQSAKKGDIVGPIRSGVGFHILRVNDLRGDQASVSVTEVHARHILLRPSPV 297
Query: 283 ADEAFQSLKKGKKFIQL----------AEEQGKSLSDISLG---SFSKEYIPDVSLADSI 329
+ K Q+ A+E + G ++ + D + D++
Sbjct: 298 MSDTQARAKLEALSAQIKSGQITFEQAAKEYSQDPGSAQKGGDLGWAVPSMYDPAFRDAL 357
Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
KG+ + +H +FG+ + + + + + ++ A E +
Sbjct: 358 -MKLNKGEISQPVHSNFGWHLIQLLDTRQVDRTDEAQKERAYRMLFNRKFAEEAQTWLQE 416
Query: 390 RLEEFL 395
+
Sbjct: 417 QRAAAY 422
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 16/244 (6%), Positives = 62/244 (25%), Gaps = 10/244 (4%)
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
+ ++ + ++ +L + + + K+ + D + L
Sbjct: 186 NPTQQQVSEAQKQAESLIQQLHQGASFAKLAA--AYSADPQALKGGEMGWGRLQELPTLF 243
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWKTVKTAEE 498
+ G + +++ + A E + V + +
Sbjct: 244 AEALQSAKKGDIVGPIRSGVG-FHILRVNDLRGDQASVSVTEVHARHILLRPSPVMSDTQ 302
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPV 557
+K L + F K + + + + +
Sbjct: 303 ARAKLEALSAQIKSGQITFEQAAKEYSQDPGSAQKGGDLGWAVPSMYDPAFRDALMKLNK 362
Query: 558 EMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ P+ + + + ++ + +K++ L + + + ++
Sbjct: 363 GEISQ-PVHSNFGWHLIQLLDTRQVDRTDEAQKERAYRMLFNRKFAEEAQTWLQEQRAAA 421
Query: 615 SVTV 618
V +
Sbjct: 422 YVKI 425
>gi|22127555|ref|NP_670978.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis KIM 10]
gi|45443417|ref|NP_994956.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis biovar
Microtus str. 91001]
gi|51594986|ref|YP_069177.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia
pseudotuberculosis IP 32953]
gi|108810533|ref|YP_646300.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Nepal516]
gi|145600395|ref|YP_001164471.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Pestoides
F]
gi|150260469|ref|ZP_01917197.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Yersinia pestis CA88-4125]
gi|153949109|ref|YP_001402397.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia
pseudotuberculosis IP 31758]
gi|165928093|ref|ZP_02223925.1| chaperone SurA [Yersinia pestis biovar Orientalis str. F1991016]
gi|165937810|ref|ZP_02226371.1| chaperone SurA [Yersinia pestis biovar Orientalis str. IP275]
gi|166008803|ref|ZP_02229701.1| chaperone SurA [Yersinia pestis biovar Antiqua str. E1979001]
gi|166212220|ref|ZP_02238255.1| chaperone SurA [Yersinia pestis biovar Antiqua str. B42003004]
gi|167422012|ref|ZP_02313765.1| chaperone SurA [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167426071|ref|ZP_02317824.1| chaperone SurA [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|167470553|ref|ZP_02335257.1| chaperone SurA [Yersinia pestis FV-1]
gi|170025786|ref|YP_001722291.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia
pseudotuberculosis YPIII]
gi|186893987|ref|YP_001871099.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia
pseudotuberculosis PB1/+]
gi|218927692|ref|YP_002345567.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis CO92]
gi|229836923|ref|ZP_04457088.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
Pestoides A]
gi|229840382|ref|ZP_04460541.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229842462|ref|ZP_04462617.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
biovar Orientalis str. India 195]
gi|229900721|ref|ZP_04515845.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
Nepal516]
gi|270487908|ref|ZP_06204982.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
gi|294502589|ref|YP_003566651.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Yersinia pestis Z176003]
gi|81691900|sp|Q66EQ7|SURA_YERPS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|121956556|sp|Q7CG87|SURA_YERPE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|121956562|sp|Q1CMT0|SURA_YERPN RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|21960659|gb|AAM87229.1|AE013971_5 survival protein [Yersinia pestis KIM 10]
gi|45438286|gb|AAS63833.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Yersinia pestis biovar Microtus str. 91001]
gi|51588268|emb|CAH19875.1| peptidyl-prolyl cis-trans isomerase, survival protein [Yersinia
pseudotuberculosis IP 32953]
gi|108774181|gb|ABG16700.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Yersinia pestis Nepal516]
gi|115346303|emb|CAL19174.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Yersinia pestis CO92]
gi|145212091|gb|ABP41498.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Yersinia pestis Pestoides F]
gi|149289877|gb|EDM39954.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Yersinia pestis CA88-4125]
gi|152960604|gb|ABS48065.1| chaperone SurA [Yersinia pseudotuberculosis IP 31758]
gi|165914222|gb|EDR32838.1| chaperone SurA [Yersinia pestis biovar Orientalis str. IP275]
gi|165919954|gb|EDR37255.1| chaperone SurA [Yersinia pestis biovar Orientalis str. F1991016]
gi|165992142|gb|EDR44443.1| chaperone SurA [Yersinia pestis biovar Antiqua str. E1979001]
gi|166206966|gb|EDR51446.1| chaperone SurA [Yersinia pestis biovar Antiqua str. B42003004]
gi|166960149|gb|EDR56170.1| chaperone SurA [Yersinia pestis biovar Orientalis str. MG05-1020]
gi|167054994|gb|EDR64794.1| chaperone SurA [Yersinia pestis biovar Mediaevalis str. K1973002]
gi|169752320|gb|ACA69838.1| SurA domain [Yersinia pseudotuberculosis YPIII]
gi|186697013|gb|ACC87642.1| SurA domain protein [Yersinia pseudotuberculosis PB1/+]
gi|229682060|gb|EEO78152.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
Nepal516]
gi|229690772|gb|EEO82826.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
biovar Orientalis str. India 195]
gi|229696748|gb|EEO86795.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229705866|gb|EEO91875.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Yersinia pestis
Pestoides A]
gi|262360619|gb|ACY57340.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Yersinia pestis D106004]
gi|262364565|gb|ACY61122.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Yersinia pestis D182038]
gi|270336412|gb|EFA47189.1| PPIC-type PPIASE domain protein [Yersinia pestis KIM D27]
gi|294353048|gb|ADE63389.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Yersinia pestis Z176003]
gi|320016865|gb|ADW00437.1| peptidyl-prolyl cis-trans isomerase C [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 434
Score = 67.2 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 9/154 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + +I + V V S + +Q+ G V +
Sbjct: 7 LILGLVICANTAFAAPQEVDKVAAVVDNGVVLQSDIDGLLQSVKMN-AQQSGQQVPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ Q + +G+ + IA N+ + SR
Sbjct: 64 --STLRHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAA----QNRMTLAQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
LA +G++ Y + K + ++V V
Sbjct: 118 LAADGLSYDTYREQIRKEMLTSEVRNNEVRRRIT 151
Score = 39.1 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 28/370 (7%), Positives = 91/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + + ++ E ++ + K+ K +A + +L+ +
Sbjct: 58 QQVPDDSTLRHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAAQNRMTLAQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ D + + + V ++ + +
Sbjct: 118 LAADGLSYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQMGNQVSGDTELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I ++ + E+ + + ++I D +
Sbjct: 178 HILIPLPENPTQQQVDQAEDLANKLVADIKGGADFGKLAI-ANSADSQALKGGQMGWGKL 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
L + G ++ + + EV +
Sbjct: 237 QELPSLFAERLQSAHKGEIVGPIRSGVGFHILKVNDMRGADQTISVTEVNARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ T E+ +K E +F I K + + Q + +
Sbjct: 297 MMTDEQARAKLEAAAAEIKSGKTSFATIAKEISQDPGSAMQGGELGWASPDIYDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ + +K++ L + + +
Sbjct: 357 LMKLKKGEI-SAPVHSSFGWHLIQLVDTRQVDKTDAAQKERAYRMLFNRKFAEEAQTWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRAAAYVKI 425
>gi|220904185|ref|YP_002479497.1| SurA domain-containing protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868484|gb|ACL48819.1| SurA domain protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 311
Score = 67.2 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 57/174 (32%), Gaps = 6/174 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V Q + M ++ ++ + + +K+LD ++ +
Sbjct: 25 NKVAAVVNGQVITMFDLQK--NALPDMARARLNPDNPADAKQVDAIFRKVLDMMIMDILI 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + + + EIA+ + + F +LAR+ + E + K L
Sbjct: 83 AQEARRLKVSVSPADIDNEIAKLM----QGRNMTKQQFEEQLARQKSSVAELRGNIEKSL 138
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
R ++ M VG +A ++ D L+ + + A +
Sbjct: 139 LRQKIMSMEVGRKVVVTPEEIRAYYEAHKDTMYDRNGLHMGVMVYSPKVNAASI 192
>gi|254491890|ref|ZP_05105069.1| SurA N-terminal domain family [Methylophaga thiooxidans DMS010]
gi|224463368|gb|EEF79638.1| SurA N-terminal domain family [Methylophaga thiooxydans DMS010]
Length = 421
Score = 67.2 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 44/131 (33%), Gaps = 9/131 (6%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + S + + + Q+ ++ S L+K++L+ L+ Q
Sbjct: 25 AVVNDEVILESELMEMQQTVRQQLRQR-----DAAIPPSEVLNKQVLERLIMQRLQLQRA 79
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
E +G+ + + + +N + F L +G N + + + + T
Sbjct: 80 EQVGVRVGDDALNAALKQIAN----NNNMNLRQFRDVLEDDGYNFSNFRNTIREEMIITR 135
Query: 164 VVGMFVGGMRP 174
+ V
Sbjct: 136 LRKSQVEDRVV 146
>gi|187477204|ref|YP_785228.1| peptidyl-prolyl cis-trans isomerase [Bordetella avium 197N]
gi|122070624|sp|Q2KXA6|SURA_BORA1 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|115421790|emb|CAJ48301.1| survival protein (peptidyl-prolyl cis-trans isomerase) [Bordetella
avium 197N]
Length = 506
Score = 67.2 bits (161), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 43/135 (31%), Gaps = 9/135 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + + K+ + ++ G + + L K++L L+
Sbjct: 56 DGIAAIVNKDVITMREVQDGVKRAKVDLKER-GIQLPDDNV----LQKQVLQRLIFDRLE 110
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + +G+ D +V I NK + + + + G++ +Y + +
Sbjct: 111 RQEADRLGIRVDDAQVTQAI----NMVASRNKLTPQQLRAEVEKNGLSWDDYRKSLREEI 166
Query: 160 SRTDVVGMFVGGMRP 174
+ +
Sbjct: 167 RTDRLRQRTIDNHII 181
Score = 38.3 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 13/155 (8%), Positives = 42/155 (27%), Gaps = 4/155 (2%)
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ + + V + ++ + Q+ F D+ +
Sbjct: 348 PVQVTQTHARHILIKTSAVMSDQQARQRLEQVRQRLESGSAKFEDMARQYSQDATAPQGG 407
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFI 591
+ + + S + P+E+ + + +V V ++ +
Sbjct: 408 DLGWVNPGEMVPSFEAAMNSLKPGEISQ-PVESPFGWHLVQVLERRQKDVTDEMQRMQAR 466
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L + + + L++Q + +R
Sbjct: 467 QALFERRAGPAFEDWMEQLRAQAYIDNRLEKQERI 501
>gi|294634977|ref|ZP_06713494.1| peptidylprolyl cis-trans isomerase SurA [Edwardsiella tarda ATCC
23685]
gi|291091576|gb|EFE24137.1| peptidylprolyl cis-trans isomerase SurA [Edwardsiella tarda ATCC
23685]
Length = 434
Score = 67.2 bits (161), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 49/150 (32%), Gaps = 9/150 (6%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + ++ + V V V S K +Q+ G +
Sbjct: 7 LILGVVLCANTAFAAPQVVDKVVAIVDNGVVLESDVDGMMKSVKLN-AQQAGQQLP---- 61
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L +IL+ L+ Q + +GLE + I N + SR
Sbjct: 62 DNATLRHQILERLIMDNIQLQMAKRMGLEVSDSELDNAINGIAA----QNHLTPQQLRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA +G++ K Y K + ++V V
Sbjct: 118 LAADGLDYKAYRAQIRKEMLISEVRNNEVR 147
Score = 43.7 bits (100), Expect = 0.100, Method: Composition-based stats.
Identities = 14/198 (7%), Positives = 48/198 (24%), Gaps = 7/198 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G+ + LF + + +++ + A E
Sbjct: 229 GEMGWGRLQELPTLFAEALQSAKKGDIVGPIRSGVGFHILRVNDLRGDQANVAVTEVHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V + + +K L + F K + + +
Sbjct: 289 HILLRTSPVMSDAQARAKLEALAAQIKSGQITFEQAAKQYSDDPGSAQKGGDLGWAVPSM 348
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + + P+ + + + ++ +K++ L
Sbjct: 349 YDPAFRDALMKLNKGEISQ-PVHSNFGWHLIQLLGTRQVDRTDEAQKERAYRILFNRKFA 407
Query: 601 DLLDSVIAYLKSQYSVTV 618
+ + + ++ V +
Sbjct: 408 EEAQTWLQEQRAAAYVKI 425
>gi|162420091|ref|YP_001605345.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Angola]
gi|162352906|gb|ABX86854.1| chaperone SurA [Yersinia pestis Angola]
Length = 434
Score = 67.2 bits (161), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 9/154 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + +I + V V S + +Q+ G V +
Sbjct: 7 LILGLVICANTAFAAPQEVDKVAAVVDNGVVLQSDIDGLLQSVKMN-AQQSGQQVPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ Q + +G+ + IA N+ + SR
Sbjct: 64 --STLRHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAA----QNRMTLAQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
LA +G++ Y + K + ++V V
Sbjct: 118 LAADGLSYDTYREQIRKEMLTSEVRNNEVRRRIT 151
Score = 38.7 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 29/370 (7%), Positives = 91/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + + ++ E ++ + K+ K +A + +L+ +
Sbjct: 58 QQVPDDSTLRHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAAQNRMTLAQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ D + + + V ++ + +
Sbjct: 118 LAADGLSYDTYREQIRKEMLTSEVRNNEVRRRITILPQEVESLAKQMGNQVSGDTELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I ++ + E+ + + ++I D +
Sbjct: 178 HILIPLPENPTQQQVDQAEDLANKLVADIKGGADFGKLAI-ANSADSQALKGGQMGWGKL 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
L + G ++ + + EV +
Sbjct: 237 QELPSLFAERLQSAHKGEIVGPIRSGVGFHILKVNDMRGADQTISVTEVNARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ T E+ +K E NF I K + + Q + +
Sbjct: 297 MMTDEQARAKLEAAAAEIKSGKTNFATIAKEISQDPGSAMQGGELGWASPDIYDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ + +K++ L + + +
Sbjct: 357 LMKLKKGEI-SAPVHSSFGWHLIQLVDTRQVDKTDAAQKERAYRMLFNRKFAEEAQTWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRAAAYVKI 425
>gi|27904901|ref|NP_778027.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|46396883|sp|Q89A98|PPID_BUCBP RecName: Full=Putative peptidyl-prolyl cis-trans isomerase D;
Short=PPIase D; AltName: Full=Rotamase D
gi|27904299|gb|AAO27132.1| peptidyl-prolyl cis-trans isomerase D [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 511
Score = 67.2 bits (161), Expect = 9e-09, Method: Composition-based stats.
Identities = 42/441 (9%), Positives = 116/441 (26%), Gaps = 6/441 (1%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVV---NSERARSVGLDKKILDNLVSGATLD 100
+ + ++ FI + E + + + L N++ + L
Sbjct: 42 IKINNTEISREEFIQRYNLECFYNDKNFKNDIITNPKNPKYISEIYNITLSNIIYESLLQ 101
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q++ + D+ V I + +F ++ KF+ + + L + I+ EYI L
Sbjct: 102 QYVHQLHFNIDYSHVKNYIYKQTIFR-QNQKFNKEKYYEYLKKLQISSNEYIKKVMTYLE 160
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
+ + N + + + + R V+ +N ++ I SN L +++ +
Sbjct: 161 IKEFIKTLTNTDFILNNEKNNILKLFEQGRIVNKSYVNLNNLKLIEHISNKELKRYYINH 220
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
K + +P+ +ISY L + + + E + + + +
Sbjct: 221 KHQFLSPKKFKISYFLINKNNVFVPCIKKFYFKNKDNTFQHELFLQHKKSKKQNDNIIKK 280
Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISL--GSFSKEYIPDVSLADSIFSLAKKGDF 338
S K +L + + + ++I K
Sbjct: 281 LLTTHTNTSQFKNIIQKNNICIHHTPWLTQTLYKHEKLPKKLLKYIINNNILFHNNKNTI 340
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ + E + I + + + +
Sbjct: 341 KNYPTIIHMNNNNAYVLWIQKYEKATIENFSKKIRKKIINILKNEHSKKIRYQIVQKIVY 400
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ + + ++ + I +
Sbjct: 401 QLNHGDTNLFSQLKLKFSNSEYYSRFNTNTLTNKIFSLPIPKKGQKIYFIFHDQKKLFLY 460
Query: 459 PDGSYMWVQIKESIPARDRKL 479
+ + ++ +
Sbjct: 461 QFSNIFYFKLTKKQKKMIASY 481
>gi|302343059|ref|YP_003807588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
baarsii DSM 2075]
gi|301639672|gb|ADK84994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfarculus
baarsii DSM 2075]
Length = 317
Score = 66.8 bits (160), Expect = 9e-09, Method: Composition-based stats.
Identities = 43/334 (12%), Positives = 95/334 (28%), Gaps = 22/334 (6%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R R + A L+++ + D ++ V +V +K+ F
Sbjct: 1 MRMNVRPFFALACLLLVSTAAALLVACD---RSGSTAWVAAVDDEKISLHQFNQK----- 52
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ +G +++ + GL K +LD ++ + + +G+E + E R
Sbjct: 53 ---AAFMGLGADAKSLDA-GLRKAVLDEMIQRLVILRQAAKLGVELSDQELDSEEERI-- 106
Query: 125 FHGKDNKFSHDVFVS-RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ F LAR + + +L R + + + +
Sbjct: 107 ----HHGMDAAAFREGMLARGMDYQDWRDELARDLLVRKTIDLVLTPRISVDQSEIVAYY 162
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+ + S +L V ++ ++ + A E
Sbjct: 163 DEHKDQFSRPEQILALHLVLPDKKMADELVARMDRGQDMLAAAKEMGVALGSDGRPDWLG 222
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF-QSLKKGKKFIQLAEE 302
+ E + +V+ +K + G+ LA+E
Sbjct: 223 RGHMPGKLEKAVFAARPGRPAGPFHSDYGYHVVWVIEKRPAMVLPLAEAAGRIQDALAKE 282
Query: 303 QGKSLSDISLGSFSKEY--IPDVSLADSIFSLAK 334
+ +L+ L E D S K
Sbjct: 283 KKDALTVGWLEELKSESKIWVDPHFLKSGMGSNK 316
Score = 46.4 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 30/289 (10%), Positives = 78/289 (26%), Gaps = 17/289 (5%)
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
+S + + A A K + + + + + + +
Sbjct: 35 WVAAVDDEKISLHQFNQKAAFMGLGADAKSLDAGLRKAVLDEMIQRLVILRQAAKLGVEL 94
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
D L + G + + + + L + + + I
Sbjct: 95 SDQELDSEEERIHHGMDA---AAFREGMLARGMDYQDWRDELARDLLVRKTIDLVLTPRI 151
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEV------SSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + K + + + A++LV + G++ K +G
Sbjct: 152 SVDQSEIVAYYDEHKDQFSRPEQILALHLVLPDKKMADELVARMDR-GQDMLAAAKEMGV 210
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV----G 582
+L + + + + VF+ P + Y V V +
Sbjct: 211 ALGSDGRPDWLGR--GHMPGKLEKAVFAARPGR-PAGPFHSDYGYHVVWVIEKRPAMVLP 267
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ + L + L + LKS+ + V + ++ + K
Sbjct: 268 LAEAAGRIQDALAKEKKDALTVGWLEELKSESKIWVDPHFLKSGMGSNK 316
>gi|262277260|ref|ZP_06055053.1| hypothetical protein HIMB114_0679 [alpha proteobacterium HIMB114]
gi|262224363|gb|EEY74822.1| hypothetical protein HIMB114_0679 [alpha proteobacterium HIMB114]
Length = 467
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/200 (18%), Positives = 83/200 (41%), Gaps = 15/200 (7%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
F WG+ D LFS + + + +KV +I S + + ++ ++
Sbjct: 21 FGAWGMGD-LFSDGNKNIIAQIKDKKVFTKEYIESARNYVNRKNKTELTDID-------- 71
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
IL++L++ ++F ED+G+ + + I F + KFS + L
Sbjct: 72 -HSLILNDLLAEKIYEKFAEDLGIIINDDALAYYIKSLENFKDSNGKFSRVEYEKFLLLN 130
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
IN K+ + K L + VV +F G+ ++ + + + + + + ++ + N
Sbjct: 131 NINVKKLEERLKKELIKNLVVKVFTNGVSSTDYHIKKIENEFLKQVNAEFYQIGNYE--- 187
Query: 205 IADPSNAVLTQWFEKYKDNY 224
S+ + ++F + K +
Sbjct: 188 --KISDEKIEKYFNQNKQKF 205
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 27/251 (10%), Positives = 81/251 (32%), Gaps = 13/251 (5%)
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
K +++ + +E + + ++ ++ I + L ++ G + + +
Sbjct: 225 FEKENDQFYKLLNDIENDVVNNLNYIDLKKKYNIKTSLLEKINKNGINKN-----RLLSE 279
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
++ + K + + + Y+ + + +++ K
Sbjct: 280 QKQFKEILFSLTENFKTEIIEIENVKYLVHLKNIIKDYEVKLETGIKKEIQDILNYQKNK 339
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
+ S + F+ K + + + NK F + ++FS
Sbjct: 340 MLAKNITE------SNDDDIFKISAKKYDLKIENV-FFENILDNNKIFSQKNVEKIFSAE 392
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF-ISYLTQMMNKDLLDSVIAYLKSQYS 615
V +N + + K + + DK + Q +L + AYL +Y
Sbjct: 393 ENKVLSINEKNKIYILKIKKISKNKNKIDNLDKILKNQTKQEFKTLILRDLDAYLIKKYP 452
Query: 616 VTVHDNLIQRY 626
+ +++ ++ +
Sbjct: 453 INLNERVLNQV 463
>gi|150388633|ref|YP_001318682.1| hypothetical protein Amet_0798 [Alkaliphilus metalliredigens QYMF]
gi|149948495|gb|ABR47023.1| hypothetical protein Amet_0798 [Alkaliphilus metalliredigens QYMF]
Length = 233
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/217 (7%), Positives = 60/217 (27%), Gaps = 1/217 (0%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
++ + I + ++ + + S V +V + F N+ ++
Sbjct: 2 FTKKSLLFIVVGLIALLVIGCASEGENLSQDQGEVVATVNGASITREVFENTVERTKLNY 61
Query: 68 SQKIGFVVNSERARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
Q+ E + + ++ L++L+ L Q ++ G + + E+
Sbjct: 62 QQQGIEFEGEEGEAMLVQVREQALNSLLQEEVLLQEAKEKGYDVSEEAIETELESMKGQF 121
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ +F + ++ + + + + + ++ L A +
Sbjct: 122 ESEEEFEAALEFNQFTEDDLRNMLASEMAIEQFLQNELEEAPASDEEAQELYDQYAAQMK 181
Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
+ + ++
Sbjct: 182 EIAEETGETEEMPAFEEVKEQLKMQIAQENQQELMAQ 218
>gi|330719900|gb|EGG98375.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase SurA) [gamma proteobacterium IMCC2047]
Length = 429
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 54/170 (31%), Gaps = 18/170 (10%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML +RK T +A + L + V V + S +
Sbjct: 1 MLNSLRKYFTTLLAALCLAPSML---------YAAIQPLDRIAVIVNDDIIMQSQVQQAI 51
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + Q+ + L ++++++L+ + Q E G+ D + I+
Sbjct: 52 DSAIRNLQQRNQQMPP-----KKVLIQQVVESLIMESLQLQIAERGGIRVDDTSLNEAIS 106
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
R N + + F + EG + + + L T VG
Sbjct: 107 RIAA----QNNMTLEQFQQAIIAEGSDYAATREQIRRELLTTRARQGSVG 152
>gi|269837477|ref|YP_003319705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphaerobacter
thermophilus DSM 20745]
gi|269786740|gb|ACZ38883.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphaerobacter
thermophilus DSM 20745]
Length = 473
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/376 (9%), Positives = 103/376 (27%), Gaps = 41/376 (10%)
Query: 40 SSTVVSVGRQKVPFSSFIN----SWKQELGMISQKIGFVVNSERARSVGLDKKI------ 89
+ T+ SV ++ + + ++ Q F + + L ++
Sbjct: 42 NQTLASVNGVEIKRADYWKMRKLELLNQIQQYVQIAQFSQGEQAVQYQQLAEQAQARLRT 101
Query: 90 ----------LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV--- 136
+ +V + Q +E +GL V + + F + S
Sbjct: 102 VESDPVESTTVSQMVDDQVVLQRLETLGLSVTDADVEQTMEQ---FFSPEPSASPTPTLG 158
Query: 137 ----FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ + T + S + + +
Sbjct: 159 VDPTAAAWATATAEAQVTPTPESTPEATPEATEEAESATPAASPTADGEDEESSAASPEA 218
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+P+ + + + + E +++ + +
Sbjct: 219 AEDATPEATPEGTPEPTPTLSPDQVQATATATFQQYKRNVLDEAGMSEEDFRRLVVLPEA 278
Query: 253 LQAEYEKNKEKY--FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL--- 307
+ + ++ E ++ + A + L++G F +LA+EQ
Sbjct: 279 ARQKVVYALQEKIPTRAEQVHAAHILVATEDAAKAIEEQLRQGADFAELAKEQSADSATA 338
Query: 308 -SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI---AHVSNIKPSFTVS 363
+ LG F + + + + + + G+ + + FG+ I +P +
Sbjct: 339 VNGGDLGWFPRGLMVEP--FEEVAFSLEPGEISAPVQTQFGWHIITVFEKEADRPVDVET 396
Query: 364 FQEVKKDIANQMRITK 379
Q ++ ++ +
Sbjct: 397 LQTLRNQQFSKWLEEQ 412
>gi|262275062|ref|ZP_06052873.1| peptidyl-prolyl cis-trans isomerase SurA [Grimontia hollisae CIP
101886]
gi|262221625|gb|EEY72939.1| peptidyl-prolyl cis-trans isomerase SurA [Grimontia hollisae CIP
101886]
Length = 432
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 11/131 (8%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + ++ + + + + + + L+++ILD L+
Sbjct: 28 DRVVAVVNDGVILSSDID-ALEKTVALNADQA--NLPPKDV----LEQQILDQLILEELQ 80
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + +G+ D R+ I K+ S RL R GI+ Y D + +
Sbjct: 81 LQEAKRLGIRIDDTRLEQAINSI----AKERNLSVSQLQERLKRNGISWSSYRDQIRREM 136
Query: 160 SRTDVVGMFVG 170
+ ++ V
Sbjct: 137 TISEARNAQVR 147
Score = 47.2 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 27/237 (11%), Positives = 73/237 (30%), Gaps = 6/237 (2%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
E +R + E+ ++ L G + +F
Sbjct: 188 EKEEREIVAETANRLVKELKDGRDFAALALANSKGPKALQGGDWGWMRLEEMPTIFADQI 247
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKAN 504
K++ Y ++I + + + EV + V + + + N
Sbjct: 248 KNNGKGAIIGPFRSGVGYHILKITDVKGLKSVAVTEVKARHILIKPSIVLSDDGAKRQLN 307
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCF 563
Q++ + K K+F D+ K A + + + ++ + + +V + P +
Sbjct: 308 QMIAQIKKGEKSFEDLAKQYSADPGSAVKGGDLGWQTSELYVPEFKDKVDTLPEGEI-SE 366
Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFIS---YLTQMMNKDLLDSVIAYLKSQYSVT 617
P + + + +V + + + L + + + + L++ V
Sbjct: 367 PFKTVHGWHIVQVLDRRQADRTDTAMQNRAYGMLLNRKFNEEVQAWLQELRAGAYVE 423
>gi|51246936|ref|YP_066820.1| hypothetical protein DP3084 [Desulfotalea psychrophila LSv54]
gi|50877973|emb|CAG37813.1| hypothetical protein DP3084 [Desulfotalea psychrophila LSv54]
Length = 333
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/214 (10%), Positives = 57/214 (26%), Gaps = 6/214 (2%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + S + I++ + + + L++++ +
Sbjct: 37 DKVVAVVNNEVITLSELNAETAEIKHKITETA--PADQQEEAMAEAREGALNSIIDKKLI 94
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q ++ + V G IA K S + F+ L + G++ Y ++ L
Sbjct: 95 AQKAKEARVFVSDEEVEGTIAGIQ----KRASLSREQFIEELKKSGLSFNTYQNNIRSQL 150
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ V+ + + + + D A + +
Sbjct: 151 LQRKVINYDIRSKIVIPESQIREYYEKEYTINAQDGEYYLLQIGFDWDKEEAGSKEKTLQ 210
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ A K + ++
Sbjct: 211 FAKRIHAIAVKGQDFGALAEKYSTLPSAKDRGDI 244
>gi|95930006|ref|ZP_01312746.1| PPIC-type PPIASE domain protein [Desulfuromonas acetoxidans DSM
684]
gi|95133975|gb|EAT15634.1| PPIC-type PPIASE domain protein [Desulfuromonas acetoxidans DSM
684]
Length = 303
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/179 (12%), Positives = 51/179 (28%), Gaps = 21/179 (11%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI L +I + S V + + + +
Sbjct: 4 KIVFTALLFSLIIPSVWAEQLS----KIAAVVNDEIITTRQLEQ-------RLVSRGERS 52
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ ++ LDN+++ ++Q +IGLE + I + N S
Sbjct: 53 ATDAQ------KRQELDNMINERLMEQRSREIGLEVSDDDIETAINDVQ----QQNNISR 102
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ L +G++ Y + + R ++G V + ++
Sbjct: 103 EQLEQALIAQGLSMSGYREQLRGQILRYKLMGYEVKSKVDITRQEVRNYYQEHLDQYRQ 161
>gi|122070668|sp|Q4K4X7|SURA_PSEF5 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
Length = 426
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 9/149 (6%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
+ L + + S V V V S + I+++ G V
Sbjct: 1 MLGALFLSTAASAAVQSIDKVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPP----- 55
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
+ L++++L+ L+ Q E G+ + I + N S + F + L
Sbjct: 56 TSVLEQQVLERLIVENLQLQIGERSGIRITDEELNQAIGTI----AQRNSMSIEQFRAAL 111
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVG 170
A +G++ ++ D + + + V V
Sbjct: 112 AHDGLSYEDARDQVRREMIISRVRQRRVA 140
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 19/239 (7%), Positives = 72/239 (30%), Gaps = 3/239 (1%)
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
++ + + + G + F +
Sbjct: 186 QSAARQAMEVYQQLKQGADFAQLAIARSGSDNALEGGDMGWRKAAQLPPPFDRELSAMAV 245
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
A G ++ +++ + ++ +EV + +EE + + Q + +
Sbjct: 246 GDITQPARTPGGFIILKLLDKRGGGNQVRDEVHVRHILIKPSEIRSEEETKRLAQKLYDR 305
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
+ G++F ++ K+ + ++ + +V + + P ++
Sbjct: 306 IEAGEDFAELAKSYSEDPGSALNGGDLNWIDPNALVPEFREVMAKTPQGQLSKPFKSPYG 365
Query: 571 YVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ V +V + + + ++ L + L + + ++ + V + ++
Sbjct: 366 WHVLEVLGRRATDSTSQAREQQAMTVLRNRKYDEELQTWLRQIRDEAYVEIKLPGAEQA 424
>gi|94967188|ref|YP_589236.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Koribacter versatilis Ellin345]
gi|94549238|gb|ABF39162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Koribacter versatilis Ellin345]
Length = 317
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 15/191 (7%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V K+ +K ++ Q+ ++ L IL L++ L Q
Sbjct: 2 ARVNGHKITRPEVEKYYKNQIAGSPQQ------PSDEQADNLRLNILRELINNEILMQRA 55
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
E +GL A V ++ + +S + F +RL GI ++ + ++
Sbjct: 56 EKLGLLATDEEVDSKVNAAKA------PYSQEQFDARLKERGITMDDFRRDLRRSITIDK 109
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
V+ + + D Y+ ++ ++ ++ A + Q K N
Sbjct: 110 VINKEITSKI---NVSDGDISSYYNAHKAEFNLIEPQYHMAQILVTPQPNPQVKNLQKAN 166
Query: 224 YRAPEYKRISY 234
A K+I
Sbjct: 167 NDAEAKKKIQQ 177
>gi|253698853|ref|YP_003020042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
gi|251773703|gb|ACT16284.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
Length = 317
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 46/168 (27%), Gaps = 11/168 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V + + + Q + GL L+ LV +
Sbjct: 27 SGIAAIVNDEIITTLELDKEYLQIQKEADKVPAS-------DKSGLRGAALNRLVERKLI 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+Q I ++ + V I K N + + LA +G+ +Y + L
Sbjct: 80 EQKIRELNINVSDEEVRLAIEDVK----KQNNLTQENLEQALATQGMTFAQYRIQLKEQL 135
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
R ++ V + V + RH+ D
Sbjct: 136 ERLRLMSQEVRSKVQVGEREMREYYQANIAAYGGSEVFSARHIFFKVD 183
Score = 40.6 bits (92), Expect = 0.71, Method: Composition-based stats.
Identities = 21/222 (9%), Positives = 68/222 (30%), Gaps = 10/222 (4%)
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
+++ ++ + +L + + + + L + + SK
Sbjct: 100 EDVKKQNNLTQENLEQALATQGMTFAQYRIQLKEQLERLRLM--SQEVRSKVQVGEREMR 157
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
Y I + + V K + ++ ++AN+++ + + G++F +
Sbjct: 158 EYYQANIAAYGGSEVFSARHIFFKVDKKGGAGELSK-AEARANEVLAKA-RAGEDFAALA 215
Query: 522 KNLGASLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
K + + + + V + V + + + K+ K
Sbjct: 216 KQYSDDPAAAKDGGDLGTFKKADMLPEIGDTVAAMQPGEVSSV-VRSPSGLHIIKLEGKK 274
Query: 581 VGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ KD L + + + + L++ ++ +
Sbjct: 275 QDAGRPFEEVKDSIEDTLYKKKSDERFAQWVKELRASAAIEL 316
>gi|209964864|ref|YP_002297779.1| peptidyl-prolyl cis-trans isomerase family protein, putative
[Rhodospirillum centenum SW]
gi|209958330|gb|ACI98966.1| peptidyl-prolyl cis-trans isomerase family protein, putative
[Rhodospirillum centenum SW]
Length = 433
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 49/174 (28%), Gaps = 14/174 (8%)
Query: 1 MLEIIRKAS--RTWVAKIFLVVLFVP-FLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSF 56
M+ +R++ A VL L+ G A V + + S
Sbjct: 1 MIRTLRQSLVRHLPTAAALCGVLLCAGVLLAGRPAAAQGQGPVERAAALVNEEVISMSDL 60
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+N + L G E + L ++L L+ Q + + +
Sbjct: 61 MNRLQMALSS----SGLPDTPETRQR--LLPQVLRLLIDEVLQIQEARRLEIRVTEQDID 114
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ + N+ S F L G+ ++ + +V +
Sbjct: 115 RALENL----AQQNRLSLGEFQRLLDASGVPVASLRQQLLASVAWSRLVQRRIR 164
>gi|217967894|ref|YP_002353400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dictyoglomus
turgidum DSM 6724]
gi|217336993|gb|ACK42786.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dictyoglomus
turgidum DSM 6724]
Length = 355
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/181 (9%), Positives = 51/181 (28%), Gaps = 8/181 (4%)
Query: 9 SRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + KI +V F++ G ++ + V+ + V + +
Sbjct: 2 KKHSIFKILFIVFVAIFILGGAFVALVYHQMKNYPVLKINGMPVSRQEYKDRLNFMKTQY 61
Query: 68 SQKIGFVVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
S + + + + + + +L + + G+ V +
Sbjct: 62 SIMFNVDFTTTEGQKLLPKVKDETIKDLARWKIVQTEAKKRGISISEKEVDTRLKEIEKE 121
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+F LA+ G + + + K L ++ + + + +
Sbjct: 122 FPSVLQF-----EMTLAQYGYDRNTFKEELRKNLLMRKLIDEIGKDEKVTEDEIKKYYNE 176
Query: 186 Y 186
Sbjct: 177 N 177
Score = 47.2 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 37/322 (11%), Positives = 91/322 (28%), Gaps = 23/322 (7%)
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP----SFTVSFQEVKKD 370
K I + + G F +++ N P + +K
Sbjct: 1 MKKHSIFKILFIVFVAIFILGGAFVALVYHQMKNYPVLKINGMPVSRQEYKDRLNFMKTQ 60
Query: 371 IANQMRITKASEKVKEDYKRLEEFL-ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ + + + ++ ++++ + K I + + + + ++
Sbjct: 61 YSIMFNVDFTTTEGQKLLPKVKDETIKDLARWKIVQTEAKKRGISISEKEVDTRLKEIEK 120
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
+ ++ +G D L M I E +E+ ++
Sbjct: 121 EFPSVLQFEMTLAQYGYDR---NTFKEELRKNLLMRKLIDEIGKDEKVTEDEIKKYYNEN 177
Query: 490 WKTVKTAEEVS---------SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
K + +E +A ++ E + F D K T ++ +
Sbjct: 178 IKLFEHPKEYKVYSILIKDEKRAKEVYNELTSNKITFTDAAKKYSEDTTTKDKGGELGFI 237
Query: 541 NKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV----GPVQEKDKFISYLT 595
+ + F+ P+ + PI+ Y + KVT K Q K + L
Sbjct: 238 TQGTLPEEVEKITFTLPLNQI-SKPIKTNEGYYITKVTEVKEAYTTPYFQAKAEIEDKLL 296
Query: 596 QMMNKDLLDSVIAYLKSQYSVT 617
+ + + S+ +
Sbjct: 297 YDKRAKVFNKWLEDQVSKAKIE 318
>gi|148262225|ref|YP_001228931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
uraniireducens Rf4]
gi|146395725|gb|ABQ24358.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
uraniireducens Rf4]
Length = 345
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/197 (13%), Positives = 61/197 (30%), Gaps = 13/197 (6%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ K +++ + ++ + V + +I ++
Sbjct: 27 STFVKTIVIIAIALLPLTARAELVSG-----IAAIVNDDIITTYEVDRD----AALIGKE 77
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
+ +E A L K L L+ ++Q I+++ + V I K N
Sbjct: 78 MEKRAPAEAADKAALRKTALSRLIDKKLIEQKIKELDIRVPEEEVRQSIEDVK----KQN 133
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
K + + V+ LA +G++ +Y + L R ++ V + +
Sbjct: 134 KLTQEALVAALAAQGLSFDQYKAQLKEQLERLRLMSQEVRAKIQVGEREMREYYDANRAK 193
Query: 191 SVDYIVLNNRHVPAIAD 207
+ R + D
Sbjct: 194 YGEEEFTRARQIYFKID 210
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 28/287 (9%), Positives = 88/287 (30%), Gaps = 8/287 (2%)
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
T + + + P+ ++K +++ K E+ ++ +
Sbjct: 63 TTYEVDRDAALIGKEMEKRAPAEAADKAALRKTALSRLIDKKLIEQKIKELDIRVPEEEV 122
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
S++++ ++ K+ L A + A + + + L + + +K
Sbjct: 123 RQSIEDVKKQNKLTQEALVAALAAQGLSFDQYKAQLKEQLERLRLM--SQEVRAKIQVGE 180
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
Y + + ++ + K + ++ AN VL+ +K GK+F
Sbjct: 181 REMREYYDANRAKYGEEEFTRARQIYFKIDKKAAESEITRVTAAAAN--VLQEAKSGKDF 238
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
++ K + + I + + + K+
Sbjct: 239 AELAKKYSDDPAAAKDGGELGTFKRGDMIPEIERALDTMKPGEISDLVRTPAGIHIIKLE 298
Query: 578 NSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVHD 620
G + ++ + + + ++D + + L+ ++ +
Sbjct: 299 ERTKGKAKPFEEVKAEIEDFLYKKKSEDRFNQWVNDLRKGAAIEIKQ 345
>gi|297622327|ref|YP_003703761.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
radiovictrix DSM 17093]
gi|297163507|gb|ADI13218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
radiovictrix DSM 17093]
Length = 641
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/194 (12%), Positives = 56/194 (28%), Gaps = 15/194 (7%)
Query: 5 IR--KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS---TVVSVGRQKVPFSSFINS 59
+R K + T + + + L V +I LF + + V Q +
Sbjct: 1 MRLSKQTNTVILWLIAIALLVSMVIAFTPGTLFGGAQPQQAEAALLVNGQPIRTVDV--- 57
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
F E + L++ +LD L+ L Q + + V +
Sbjct: 58 -----ARFEATPPFNAVQEGPAAEDLEQVLLDELIDQELLRQAASR--VNVSNAEVRARV 110
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
G + ++ + G ++ + + L R + G + ++ +
Sbjct: 111 NAFREEQGVAGSANDRAYLDLIGSAGYTDESFRALMREQLQRERYLESVAGDLEVTDEEV 170
Query: 180 DQAKRFYFENRSVD 193
+ +
Sbjct: 171 RAHFEANRDVYQSE 184
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 28/112 (25%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS--ERARSVGLDKKILDNLVSGA 97
+ V VG ++ + + +S ++ +++ + + +L+ L+
Sbjct: 335 NPVVARVGDHEIRAAELNRN-----TYLSPQLQGLISPGFADVIAESIKPGVLEQLIDRE 389
Query: 98 TLDQFIEDIGL---------------------EADHGRVWGEIARSPLFHGK 128
Q + +G+ EA V + F +
Sbjct: 390 LAYQGADALGVPFVGSRAQVAQSVLGYVSREAEASDDEVARYYEENQAFFTQ 441
Score = 42.2 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 11/164 (6%), Positives = 41/164 (25%), Gaps = 14/164 (8%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++ + + + + + AN L G++F + +
Sbjct: 163 LEVTDEEVRAHFEANRDVYQSEPRIVARQLVVTDEGLANDLYARAL-AGEDFAALAREHS 221
Query: 526 ASLLTTNQI--------NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
+ F+ PIE ++ + V
Sbjct: 222 TERAEQGGALGAAEGESDPRPVTRVALPTAVADAAFAL-QGTGLTEPIEAAGAFYIVSVE 280
Query: 578 NSKVGPVQEKDKFISYLTQ----MMNKDLLDSVIAYLKSQYSVT 617
+ + ++ + + ++ + L+ + ++
Sbjct: 281 AYEPPQPRPFEEVQEQVREDALAAKETGAQEAALRTLREEATIE 324
>gi|320449245|ref|YP_004201341.1| peptidyl-prolyl cis-trans isomerase, PpiC family [Thermus
scotoductus SA-01]
gi|320149414|gb|ADW20792.1| peptidyl-prolyl cis-trans isomerase, PpiC family [Thermus
scotoductus SA-01]
Length = 605
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/425 (11%), Positives = 118/425 (27%), Gaps = 50/425 (11%)
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK-- 305
+ +E++ +E ++E Y Q+V K A E K G+ F LA++ K
Sbjct: 160 PTPEEVRFYFEVHQEDYKGEPRLKARQIVVDEAKLAAELLAKAKAGEDFAALAKQYSKVG 219
Query: 306 SLSDISLGSFSKEYIPDV-------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+ +LG+ E P K + Y + V P
Sbjct: 220 AEQGGALGAGPGESEPKPVTKVVFPDKVAEAVFAQKGPGLVGPVEAGGRYYLVKVEEYLP 279
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ +F+E+K+ + + K + ++ + L + + + D + + +
Sbjct: 280 AKVPTFEEIKEQVEKDAQAAKGNGALEAYLENLRQKAQVRFAEDSPFSYKNLPVAKVNEQ 339
Query: 419 D--------------------FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ G + E L+ R +
Sbjct: 340 EILLAQVLQPVFSNQQTAALIQQGLGDLAVQFFLPQTLESLIERELLVEAAKKSGKPFIG 399
Query: 459 PDGSYMWVQIKESIPARDRKLEEVL---------TDVKKDWKTVKTAEEVSSKANQLVLE 509
+ EE + + + +KA
Sbjct: 400 SKDQIAQAYLLYETRGLTATEEEARRFYAENPALFTIPASAEVTGVVFKAEAKAKAFREA 459
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVF-SGPVEMVKCFPIE 566
+ G + + + K ++ ++ + + + F GP+ V
Sbjct: 460 ALRGG-DLQALAKAQEGTVTEYGTVS-PNQLPAVLDRLVFKVKETFPKGPMGEVSEVVKL 517
Query: 567 NGLSYVVFKVTNSKV----GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
++ V V N K + ++ + + +++ L+ + N
Sbjct: 518 EDGTFAVLLVKNRKPEVLKPFNEVVEEAKERVILSKRQQKGQALVQELRKAAKIE---NR 574
Query: 623 IQRYL 627
+ + L
Sbjct: 575 LSQVL 579
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 42 TVVSVGRQKVPFSSFINSW---KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V Q++ + + +Q +I Q +G + L++L+
Sbjct: 332 PVAKVNEQEILLAQVLQPVFSNQQTAALIQQGLG------DLAVQFFLPQTLESLIEREL 385
Query: 99 LDQFIEDIG--LEADHGRVWGE 118
L + + G ++
Sbjct: 386 LVEAAKKSGKPFIGSKDQIAQA 407
>gi|37524613|ref|NP_927957.1| peptidyl-prolyl cis-trans isomerase SurA [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|81707805|sp|Q7N8V5|SURA_PHOLL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|36784037|emb|CAE12906.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase surA) (PPIase) (Rotamase C) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 433
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/206 (16%), Positives = 57/206 (27%), Gaps = 9/206 (4%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + + V V S N + +Q G + E+
Sbjct: 7 LIFGLMFSVSTAFAAPQQMDKIAAVVNNGVVLESDINNRLQSVKRD-AQHAGQQIPDEQT 65
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ L Q + +G+ + IA N + D R
Sbjct: 66 ----LRHQILERLIIDNILLQMAKQMGITIPDQALDSTIANIAA----QNHITVDQMKHR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
+A +G+N Y D K + +V V A N++ + LN
Sbjct: 118 IAADGMNFDTYRDQIRKEMLIAEVRNNEVRRRVTILPQEIDALVKQISNQNTNDTELNIS 177
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRA 226
H+ +
Sbjct: 178 HILIPLPENPDQAQMEKAMTVVQKIM 203
Score = 39.1 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 26/371 (7%), Positives = 92/371 (24%), Gaps = 9/371 (2%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q ++ ++ E ++ ++ K+ +A + ++ +
Sbjct: 58 QQIPDEQTLRHQILERLIIDNILLQMAKQMGITIPDQALDSTIANIAAQNHITVDQMKHR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ D + + + + + + + +
Sbjct: 118 IAADGMNFDTYRDQIRKEMLIAEVRNNEVRRRVTILPQEIDALVKQISNQNTNDTELNIS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I + ++ + S + ++I D + +
Sbjct: 178 HILIPLPENPDQAQMEKAMTVVQKIMSELKHGVDFGKLAI-AYSADPQALKGGNMGWSRL 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWK 491
L + + G + +++ + E +
Sbjct: 237 QELPTLFAEQLQLAQKGAVVGPIRSGVG-FHILKVNDIRGGNPTIAVTEVHARHILLRTS 295
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGIS 550
V T ++ +K Q+ + +F D K + + + +
Sbjct: 296 PVMTDDQARTKLQQIASDIRSGKTDFADAAKEFSDDPGSALRGGDLGWTAPDIYDPAFRD 355
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ + P+ + + + ++ V +KD+ L + S +
Sbjct: 356 ALMRLNKGEISQ-PVHSSFGWHLIQLLDTRKVDKTDVAQKDRAYRMLFNRKFTEEAQSWM 414
Query: 608 AYLKSQYSVTV 618
++ V +
Sbjct: 415 QEQRASAYVKI 425
>gi|225850985|ref|YP_002731219.1| ppic-type ppiase domain protein [Persephonella marina EX-H1]
gi|225646600|gb|ACO04786.1| ppic-type ppiase domain protein [Persephonella marina EX-H1]
Length = 325
Score = 66.8 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/322 (10%), Positives = 97/322 (30%), Gaps = 13/322 (4%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
V L ++ + G + + + V VG ++ K L
Sbjct: 3 KVIIFLLGLITSVYAYEGFGWNIDPSTKNKVVAKVGDVEITEMEVQRMMKILLP--MNFY 60
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ E+ + + +K + NL+ L + GL+ + +
Sbjct: 61 HRNITEEKLKE--IREKAIQNLIYRELLYYEAKKKGLKVTEKEINNLMD-----QLIKQY 113
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
S + L + G+ + + K L ++ + L + ++ +++
Sbjct: 114 KSKENLEKLLKQTGLTIEGFKKELEKRLLVDKLIKKYAIVSLTDKDLKEYYEK--NKDKF 171
Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
+ + R++ DPS+ + + + + + I
Sbjct: 172 KEPASVKVRYIYIKVDPSDPKGREKAREKAKKAYKEIKEGKDFGDVAYRYSDDLSRIKGG 231
Query: 252 ELQAEYEKNKEKYFSPEIRTVE--QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
++ ++ K EI ++ Q+ + + ++ + + E+ K
Sbjct: 232 DIGYVHKGRFPKQIEEEIYKLDVGQVSKIIETDTGLHIVKIEDKRPPRLVPYEEIKDKLK 291
Query: 310 ISLGSFSKEYIPDVSLADSIFS 331
L +E + + D+ +
Sbjct: 292 KELTEVMQERKFNELIKDAKKN 313
>gi|85858737|ref|YP_460939.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
gi|85721828|gb|ABC76771.1| peptidyl-prolyl cis-trans isomerase [Syntrophus aciditrophicus SB]
Length = 322
Score = 66.4 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 40/153 (26%), Gaps = 6/153 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + +++ I + +L+ ++ +
Sbjct: 27 DRIVAFVNDEIITLHELNTAFEPYRKKIDDSYKG--TDKDRIMSETRLTLLNRMIDNLLI 84
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+Q + + V I + D F LAREG N ++Y +
Sbjct: 85 EQEAKKSAIAVSDEEVMASIRDNLARRKTTM----DAFQQSLAREGTNFEDYKKEMRDSM 140
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
RT ++ V N
Sbjct: 141 VRTRLLRREVRSKVTVNDEEIGEYYRLHREEYE 173
Score = 46.4 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 49/132 (37%), Gaps = 6/132 (4%)
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
++ + A +++ + + G++F + ++ N E +
Sbjct: 191 MDENAKAKLQADAMEIL-KRLRMGESFDSLAARFSQGPAASDGGNVGFVEKGAMLPEVEK 249
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSV 606
FS + + IE+ + + + KV + + + + + S L + DS
Sbjct: 250 AAFSLDRDKISDL-IESPVGFHIIKVIDRRGPGLKPIEEVRAEIKSRLEDGKIEKKFDSW 308
Query: 607 IAYLKSQYSVTV 618
I+ L+++ V +
Sbjct: 309 ISELRAKSLVEI 320
>gi|251772781|gb|EES53343.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
ferrodiazotrophum]
Length = 382
Score = 66.4 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/198 (13%), Positives = 59/198 (29%), Gaps = 7/198 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S + V + S K I + S L+ ++ ++
Sbjct: 70 DSIMAVVNHHSITKSEVDRELKPTFEKIHATYQGPAYMQLVAS--LEYNVMMKKINERLE 127
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ + +GL V I + + LA +G+ ++Y K L
Sbjct: 128 LEEADRLGLSVTDDEVDHAIDDIMQKNNIQE---RWQLKNALASQGLTFRQYRKKLKKQL 184
Query: 160 SRTDVVGMFVGGMRP--SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ +V V + D + E R ++ L + + +P+ A + +
Sbjct: 185 TVMKLVNQEVRSTVVISPEEVRDYFLKHRDEYRLPAHVSLADIFLALPENPTPAQIAEVR 244
Query: 218 EKYKDNYRAPEYKRISYI 235
+K + R +
Sbjct: 245 KKGEHVLRQIGRGDDFEM 262
Score = 43.7 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 33/274 (12%), Positives = 76/274 (27%), Gaps = 11/274 (4%)
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
I ++ + K + E + L++ + + + +
Sbjct: 94 FEKIHATYQGPAYMQLVASLEYNVMMKKINERLELEEADRLGLSVTDDEVDHAIDDIMQK 153
Query: 413 IDLP--LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG--SYMWVQI 468
++ +G K + V + + V P+ Y
Sbjct: 154 NNIQERWQLKNALASQGLTFRQYRKKLKKQLTVMKLVNQEVRSTVVISPEEVRDYFLKHR 213
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
E L ++ + ++ + AE K + VL G +F + +
Sbjct: 214 DEYRLPAHVSLADIFLALPENPTPAQIAEV--RKKGEHVLRQIGRGDDFEMLAGSESQGP 271
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + + I FS PV I+ + + KV + P Q+ D
Sbjct: 272 NAESGGALGNLTKDQLLPELIGPAFSVPVGKTSGL-IQTDRGFYIIKVLAREAQPYQKFD 330
Query: 589 KFISYLTQMM----NKDLLDSVIAYLKSQYSVTV 618
+ + + L + L++ V +
Sbjct: 331 DIKQTILNTLTKKTTEKRLRLWLEKLRAHSYVAI 364
>gi|224827238|ref|ZP_03700332.1| SurA domain protein [Lutiella nitroferrum 2002]
gi|224600527|gb|EEG06716.1| SurA domain protein [Lutiella nitroferrum 2002]
Length = 428
Score = 66.4 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 46/133 (34%), Gaps = 9/133 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + S K+ + + + + L +++L+ +++
Sbjct: 28 DRIVAVVNKSAITESDLQKRIKETVMELEARKVTPPAPD-----VLARQVLEQMITEEVQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q+ G+ + + R NK + + ++LA+EG+ + + + +
Sbjct: 83 VQYATSNGVRVSDDELQQTLERLAS----QNKLTLEAMKAQLAKEGVTFDNFREQIRRQI 138
Query: 160 SRTDVVGMFVGGM 172
+ + V
Sbjct: 139 LLSRLKEREVESR 151
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 28/243 (11%), Positives = 66/243 (27%), Gaps = 5/243 (2%)
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
+ + + + + ++ E+ + + D G L
Sbjct: 182 SVPERADAKQIDAQSQKAHKALAELDAGQPFAKVAAAYSDAPNGLKGGDLGWRPASSLPL 241
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
F + TV + Q++E A + E +T + E
Sbjct: 242 DFTKLLETMQPGSHTTVIRSQQGFFIFQLQEKRSADTPLIVEQYHVRHILLRTNEAVSEA 301
Query: 500 SSKANQL-VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
+K L + + + G +F ++ K T + + S P+
Sbjct: 302 DAKTRLLQIRDRIERGASFEEMAKLYSEDASNTRGGDLGWVNLGDTVPTFEQAMTSLPLN 361
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDK---FISYLTQMMNKDLLDSVIAYLKSQYS 615
V P+ + + + KV + V + + + + + L+
Sbjct: 362 TVSQ-PVRSPFGWHLIKVEGKRTQDVAQDREKMMVKQQIRARKIDEAYLDWVRQLRDSAF 420
Query: 616 VTV 618
V
Sbjct: 421 VDD 423
>gi|310779548|ref|YP_003967881.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ilyobacter
polytropus DSM 2926]
gi|309748871|gb|ADO83533.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ilyobacter
polytropus DSM 2926]
Length = 575
Score = 66.4 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 60/612 (9%), Positives = 178/612 (29%), Gaps = 47/612 (7%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
+RK + + + + FV L +S+ + S + +KV +
Sbjct: 5 KLRKNMK-PIIWVITIAFFVSMLTVIVSNIRMGMGNQSYAFKINGEKVETLKVERTMTNL 63
Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
G+ Q G ++ E + + + ++ Q + + ++ + E +
Sbjct: 64 SGVYQQYFGANLDKELSNLI-----AFNQVIEKELTMQIAKKLKVKVPKKEINAEYDKIV 118
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+F + ++T + G+ + +
Sbjct: 119 NSINDKEQFKR------------------MLQIQGYTKTTLKKEIEEGLLLEKTIAAIKE 160
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
++ + N++ + V + + KD +Y + + + + E
Sbjct: 161 QYIPSEDELKEEYEENKYGTYLGKTYEEVKPELEAQLKDKKGIEKYSALLHEEKENMKLE 220
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
E L+ + + + + + + ++ ++
Sbjct: 221 AVDEEYVKYLEQPSLEKDGFVITNVDMANRTIRNLF--------ATGGEVTQAEEMTKQS 272
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
++ I+ + + + +L+ + + I S+ + N ++
Sbjct: 273 FETDIKIAKEAIKRGLSVEENLSTTDKLYGLRTKLEKDIKDSYKVSEDELKNFFEKNKLA 332
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
+ AN + + ++ + L + E I + P G
Sbjct: 333 YDTAASSDANIVEFKAEVSEKDKETALEKAKEILKEATPENFEELAIKYSEGPSGPKGGD 392
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
++ + E +F+ + V G ++ + ++ +
Sbjct: 393 LGWFEKGQMVKPFEDAVFK---GESGKVYPEIVETQFGHHII-----YVEEKEESKAKAR 444
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK--NLGASLLTTNQINRMDNEN 541
+ + + +T + + +A +V + + F ++ K + I
Sbjct: 445 HILITNKISDETKKLLKDEALSVVDKLQNKELTFEEVSKGGKNIVASKAYTGITEGGYIP 504
Query: 542 K-FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQM 597
+ + + ++F + F G YV K+ K + KD+ L +
Sbjct: 505 ELGYKIELAKEIFKSELNKF-QFVESQGEIYVFQKIKEVKYKKADFEEVKDRVKYDLLNI 563
Query: 598 MNKDLLDSVIAY 609
+++ L +I
Sbjct: 564 KSQEELKKIIEN 575
>gi|108810078|ref|YP_653994.1| peptidyl-prolyl cis-trans isomerase SurA [Yersinia pestis Antiqua]
gi|167401555|ref|ZP_02307049.1| chaperone SurA [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|121956548|sp|Q1C0H3|SURA_YERPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|108781991|gb|ABG16049.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Yersinia pestis Antiqua]
gi|167048937|gb|EDR60345.1| chaperone SurA [Yersinia pestis biovar Antiqua str. UG05-0454]
Length = 434
Score = 66.4 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 9/154 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + +I + V V S + +Q+ G V +
Sbjct: 7 LILGLVICANTAFAAPQEVDKVAAVVDNGVVLQSDIDGLLQSVKMN-AQQSGLQVPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ Q + +G+ + IA N+ + SR
Sbjct: 64 --STLRHQILERLIMDNIQLQMAKKMGITITDQALDKAIADIAA----QNRMTLAQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
LA +G++ Y + K + ++V V
Sbjct: 118 LAADGLSYDTYREQIRKEMLTSEVRNNEVRRRIT 151
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 26/352 (7%), Positives = 85/352 (24%), Gaps = 7/352 (1%)
Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
++ + K+ K +A + +L+ + + D
Sbjct: 76 MDNIQLQMAKKMGITITDQALDKAIADIAAQNRMTLAQMRSRLAADGLSYDTYREQIRKE 135
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+ + + V ++ + + + I ++ +
Sbjct: 136 MLTSEVRNNEVRRRITILPQEVESLAKQMGNQVSGDTELNLSHILIPLPENPTQQQVDQA 195
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
E+ + + ++I D + L
Sbjct: 196 EDLANKLVADIKGGADFGKLAI-ANSADSQALKGGQMGWGKLQELPSLFAERLQSAHKGE 254
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEY 510
+ G ++ + + EV + + T E+ +K E
Sbjct: 255 IVGPIRSGVGFHILKVNDMRGADQTISVTEVNARHILLKPSPMMTDEQARAKLEAAAAEI 314
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
+F I K + + Q + + + + P+ +
Sbjct: 315 KSGKTSFATIAKEISQDPGSAMQGGELGWASPDIYDPAFRDALMKLKKGEI-SAPVHSSF 373
Query: 570 SYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + ++ + +K++ L + + + ++ V +
Sbjct: 374 GWHLIQLVDTRQVDKTDAAQKERAYRMLFNRKFAEEAQTWMQEQRAAAYVKI 425
>gi|193211689|ref|YP_001997642.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum
NCIB 8327]
gi|193085166|gb|ACF10442.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobaculum parvum
NCIB 8327]
Length = 439
Score = 66.4 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 59/500 (11%), Positives = 126/500 (25%), Gaps = 74/500 (14%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
F VL V GLSDA+ S + V VGR+ + S +
Sbjct: 3 KTVFAFFAVLIVALA--GLSDAIASSAPDKIVAIVGREIILKSQINEQELMYHLQYRESK 60
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
GL +KIL N++ L + + + + ++ ++
Sbjct: 61 NDP---------GLRQKILKNMIDQKILLTKARIDSISVNEQGIDEM--ANAKYNALRSQ 109
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
F + R + + +V
Sbjct: 110 FPSVSAME--ERFSLPVNRLKQDIRDDIRNQQMV-------------------------- 141
Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
R S + ++ K ++N
Sbjct: 142 ----DALRRKHFHDVTVSYDEVMAFYGKERNNLPKVPEM--------------------- 176
Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
+Y ++ + Q + + + +++ G
Sbjct: 177 ----VSVSQLIRYPEIADSEKQRAMSKIQAISQQLQNGADFATLARETSDDPGSRELGGD 232
Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
LG K + + K G + V+ FGY + + + + +
Sbjct: 233 LGFVHKGELVPS--FEEAAYALKPGQISGVVESRFGYHLIQLIDKEDQSIHVRHILAAFD 290
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
N+ + K ++ + A M E + V +
Sbjct: 291 RNKTDLPKTVRMLEAIRADILAGKASFAEMAEKYSEDPASKGTGGQVISSATGEPFLVFD 350
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKD 489
++ Q + +S+ + G + ++ E +PA E T +++
Sbjct: 351 SLRPDLQKIVGGLKHAGDISQPVKIEPERGPFFYALFRLDERLPAHQLSPERDFTRLEEM 410
Query: 490 WKTVKTAEEVSSKANQLVLE 509
K E+ + +L E
Sbjct: 411 AANQKRQEQFEAWIEKLKKE 430
>gi|152984838|ref|YP_001346133.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
PA7]
gi|150959996|gb|ABR82021.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
PA7]
Length = 430
Score = 66.4 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S ++ + ++ G + E L +++L+ L+
Sbjct: 31 DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G+ + +A + N S + F + L R+G++ + D + +
Sbjct: 86 QQIGDRSGIRISDEELNQAMATI----AQRNGMSLEQFQAALTRDGLSYADARDQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 VISRVRQRRVA 152
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/194 (12%), Positives = 63/194 (32%), Gaps = 4/194 (2%)
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
Q + G V P G ++ ++++E +EV
Sbjct: 238 WRKAAQLPQPFDSMIGSLAVGDVTEPVRTP-GGFIILKLEEKRGGSKMVRDEVHVRHILL 296
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ ++ + K Q + E + G++F ++ K+ + ++ +
Sbjct: 297 KPSEIRSDAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDPEALVPEF 356
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSV 606
QV + + P + + + +V + EK + +S L + L +
Sbjct: 357 RQVMNDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKYDEELQAW 416
Query: 607 IAYLKSQYSVTVHD 620
+ ++ + V +
Sbjct: 417 LRQIRDEAYVEIKQ 430
>gi|170723956|ref|YP_001751644.1| SurA domain-containing protein [Pseudomonas putida W619]
gi|169761959|gb|ACA75275.1| SurA domain [Pseudomonas putida W619]
Length = 441
Score = 66.4 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S ++ I+++ G V + L++++L+ L+
Sbjct: 33 DRVVAIVDNDVVMQSQLDQRVQEVQQTIAKRGGGVPP-----TSALEQQVLERLIVENLQ 87
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S D F + LAR+G++ + + + +
Sbjct: 88 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFDDAREQVKREM 143
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 144 IISRVRQRRVA 154
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/216 (8%), Positives = 64/216 (29%), Gaps = 5/216 (2%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ ++ + +P G + ++ +
Sbjct: 225 ANSASENALEGGEMGWRKAAQLPPEFAKLLSSMATGDITQPLRIPSGFIIIKLEEKRGGS 284
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ +EV + +E + + + + E K G++F ++ K+ +
Sbjct: 285 ENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYERIKGGEDFAELAKSFSEDPGSALNG 344
Query: 535 NRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKF 590
++ + + Q+ + V P + + V +V + E+ +
Sbjct: 345 GDLNWVDPNSLVPEFREQMANAQQG-VVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQA 403
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ L + L + + ++ + V + +
Sbjct: 404 MNVLRNRKYDEELQTWLRQIRDEAYVEIKLPGADQA 439
>gi|220919569|ref|YP_002494873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219957423|gb|ACL67807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 338
Score = 66.4 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 5/150 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + ++AR+ L + D +VS
Sbjct: 37 DRVAAIVNGDVVTLQELEQRAAALGLAAADALPAGPARDKARADALRR-AFDQVVSDKLF 95
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ +++ +E +V I K N F+ S LA EG + +Y + L
Sbjct: 96 AEKAKELEIEVTEKQVDDAIEGVK----KQNGFTDAQLESALASEGYSMTDYRARIRREL 151
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
++ V G ++ +
Sbjct: 152 QNFSLLQYKVAGKIKTSEEDLRNYYQSHPQ 181
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 5/116 (4%)
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
VL+ K G++F + K + + F+ + +E
Sbjct: 217 VLQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTIHRTLEDAAFALKTGEMSGL-VE 275
Query: 567 NGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
G + KV + G Q +D+ L + ++ +A L+ + V
Sbjct: 276 AGPGVHILKVEERRRGGGKSFEQARDEIRQRLGEEQAENYRQQYVAELRRDALIDV 331
>gi|84684877|ref|ZP_01012777.1| Probable PpiC-type peptidyl-prolyl cis-trans isomerase
[Maritimibacter alkaliphilus HTCC2654]
gi|84667212|gb|EAQ13682.1| Probable PpiC-type peptidyl-prolyl cis-trans isomerase
[Rhodobacterales bacterium HTCC2654]
Length = 414
Score = 66.4 bits (159), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/157 (14%), Positives = 45/157 (28%), Gaps = 17/157 (10%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
W +I + + + V V V + +
Sbjct: 9 RRNGWAGRILTLCASAALGMMMAGSPATAQGQFVPVAKVNDSAVTVYE-----RNQRMAF 63
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+ + + + + LD L++ E +G+ AD V +A
Sbjct: 64 LRILNAPGD--------ITQLALDQLINERIQLAEAERMGITADPEAVQNGMAEFAA--- 112
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+ F + LA+ GI + + D T + +V
Sbjct: 113 -RGNLDVEQFGAFLAQAGIAFETFRDFVTAGIVWREV 148
>gi|332524713|ref|ZP_08400912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrivivax
benzoatilyticus JA2]
gi|332108021|gb|EGJ09245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrivivax
benzoatilyticus JA2]
Length = 436
Score = 66.4 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/410 (10%), Positives = 123/410 (30%), Gaps = 64/410 (15%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+G V V ++ V + + ++ L ++ + + + K++LD+L+
Sbjct: 32 NGDYIVAIVNQEAVTAAEVESRVQRVLQAAAR------SGAQPSLEVVRKRVLDDLIEER 85
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ + D G+ + V I N+ + D RL +G++ + +
Sbjct: 86 AIVTYARDSGIRVEDPEVDRAIQSVAA----QNQLTADQLRERLRADGLDYARFRANLRD 141
Query: 158 MLSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
+ V V +R ++ +D+ D + + + + + + +
Sbjct: 142 QILIERVREREVYQRIRVTDGEVDRYLAQQNIATQADVELNIAQILVIVPEGGDEQVLAA 201
Query: 217 FEKYKDNY-------------------------------------RAPEYKRISYILFDV 239
+ + + + +
Sbjct: 202 RKARAEQALARVRGGEDFAAVAREISEDANQERGGVIGLRPSARLPDLFVEAVRDVPAGE 261
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK-------- 291
+ E + + E+ + ++ + + +
Sbjct: 262 VKPELVRSGAGFHVLKVVERKETMAVRVTQTHARHILVRTSERVSPEMAAQRLAEFRRQI 321
Query: 292 --KGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
++F +A + + S LG F+ + +++ L +G +P + F
Sbjct: 322 VSGQRRFEDVARQYSEDGSAPSGGDLGWFAPGTMV-PEFEEAMNRLPIEG-VSPPVRSRF 379
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
G + V + + + ++V++ N +R K + E K L +
Sbjct: 380 GVHLIQVLERRDTAVEA-RQVREQARNVLRERKFDDAYTEWAKDLRDRSY 428
>gi|197124851|ref|YP_002136802.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
K]
gi|196174700|gb|ACG75673.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
K]
Length = 336
Score = 66.4 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 5/150 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + ++AR+ L + D +VS
Sbjct: 35 DRVAAIVNGDVVTLQELEQRAAALGLAAADALPAGPARDKARADALRR-AFDQVVSDKLF 93
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ +++ +E +V I K N F+ S LA EG + +Y + L
Sbjct: 94 AEKAKELEIEVTEKQVDDAIEGVK----KQNGFTDAQLESALASEGYSMTDYRARIRREL 149
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
++ V G ++ +
Sbjct: 150 QNFSLLQYKVAGKIKTSEEDLRNYYQSHPQ 179
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 5/118 (4%)
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
Q VL+ K G++F + K + + F+ +
Sbjct: 213 QRVLQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTIHRTLEDAAFALKTGEMSGL- 271
Query: 565 IENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+E G + KV + G Q +D+ L + ++ +A L+ + V
Sbjct: 272 VEAGPGVHILKVEERRRGGGKSFEQARDEIRQRLGEEQAENYRQQYVAELRRDALIDV 329
>gi|115375725|ref|ZP_01462979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stigmatella
aurantiaca DW4/3-1]
gi|310825132|ref|YP_003957490.1| peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1]
gi|115367288|gb|EAU66269.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Stigmatella
aurantiaca DW4/3-1]
gi|309398204|gb|ADO75663.1| Peptidylprolyl cis-trans isomerase [Stigmatella aurantiaca DW4/3-1]
Length = 322
Score = 66.4 bits (159), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/170 (19%), Positives = 62/170 (36%), Gaps = 7/170 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR-SVGLDKKILDNLVSGAT 98
V R + S EL ++ G RA + K+ LD L++
Sbjct: 25 DRVAAVVNRDIITLSEVNQRAAPELSRLA---GEKDPRRRADGRAQILKQSLDVLIAEKL 81
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
++ I ++G+ V +A ++ + + F L REG K Y + +K
Sbjct: 82 IEAEIRELGMTVSPSEVDEAMADV---RKQNGVETPEQFEQLLQREGYTLKSYREFLSKQ 138
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
++R ++ M VG + +A + ++ RH+ DP
Sbjct: 139 IARGRLMQMKVGPKVKVSEEDLKAAYAQYAKLEGGEAEVHARHILVSVDP 188
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 39/131 (29%), Gaps = 5/131 (3%)
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
T + + KA + E + G +F + + + +
Sbjct: 191 TQEQVDAAQKKAQAIAEEARRPGMDFASLARARSEGPSAEDGGDLGFFRRGVMVPAFEKT 250
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKV----GPVQEKDKFISYLTQMMNKDLLDSVI 607
F+ V PI + V KV + + K L Q + +D +
Sbjct: 251 AFALKEGEV-SEPIRTNFGWHVLKVEERRAVGVAPFEDLRAKLEQQLRQDKTEKYIDQYV 309
Query: 608 AYLKSQYSVTV 618
L+ + SV V
Sbjct: 310 QELRQKSSVEV 320
>gi|313679080|ref|YP_004056819.1| ppic-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
profundus DSM 14977]
gi|313151795|gb|ADR35646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
profundus DSM 14977]
Length = 621
Score = 66.0 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 70/624 (11%), Positives = 156/624 (25%), Gaps = 70/624 (11%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSS---TVVSVGRQKVPFSSFINSWKQELGMISQK 70
I +L F I + + ++ V Q + + +
Sbjct: 8 ITIIFGILAAAFAIGTIFLFTPQGNPQQEGRPILYVNGQPINELELMRKAQT-------N 60
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
F +N +D L+ +++ L Q + V ++ + G
Sbjct: 61 PLFTLNPTGVLRPLIDTYFLEQVITLEALRQDAAR--IRVSSSEVKQQVDQLRERLGVT- 117
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+ + L G + + D L + ++ ++ +
Sbjct: 118 --DREGYDRFLQSIGYTDSQLRDEIRTQLRIQKRIDELRKKVKLTDEEARFYYELHKGEY 175
Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
+ + V + V ++ V Q A +Y ++ E
Sbjct: 176 AAEDRVKARQIVLDDQATADQVYKQLIGGADFAELARQYSKVGAEQGGAVGAEPGSS--- 232
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
+ + +P V QL E E K L
Sbjct: 233 ----EPGPVTRLVFPTPVADAVFQLKSGGMTEVIETGGRYYIVKVEEFL----------- 277
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
G E + D +D++ + + G I + + + + +V K
Sbjct: 278 PGGDVPYEEVADRVKSDALS-VKQNGAVENYIREVRDRAVVKFTEEQIPYEYKNPDVAKV 336
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ +L + + + S ++ + + +L + F
Sbjct: 337 G--------------DKTIKLADVIQVVFSDQQVPQLIQQGLGELAVSFFFPAATDQLIT 382
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
+ ++ K V L + V E + +
Sbjct: 383 EELLLQQAEASGEPFIGTRAQKAQDVQLWKTKDVTVTPDEVRAYYEENP--ARFSIPASA 440
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+ + A++ + G ++ K LG + +N
Sbjct: 441 TVKTVSFKDKETADKFREKLI-AGDPLEELAKGLGGQVSDLGTVN----PGSGLPPVVEQ 495
Query: 551 QVFSGPVE----------MVKCFPIENGL-SYVVFKVTNSKVGPVQEKDKFI----SYLT 595
VF+ + V P ++ +Y+V V + K + +
Sbjct: 496 LVFATDADYARAGDWGVSEVVELPGQDNQKTYMVVLVKDKKAEVKKPFEAVKAEAEQLAL 555
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVH 619
L I LK Q V +
Sbjct: 556 AAKRAKLAAEWIDQLKQQAGVENN 579
>gi|163792785|ref|ZP_02186762.1| hypothetical protein BAL199_18098 [alpha proteobacterium BAL199]
gi|159182490|gb|EDP66999.1| hypothetical protein BAL199_18098 [alpha proteobacterium BAL199]
Length = 329
Score = 66.0 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/154 (9%), Positives = 49/154 (31%), Gaps = 1/154 (0%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ Q+ E K +++ + +A ++ + K G +F + K
Sbjct: 164 IAAQVTEDALRERYKTFAAEQSGREEAHASHILLDTEDQAKAVIADLDKGG-DFAALAKE 222
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ + + F+ P+++ + V K+ +
Sbjct: 223 RSTDPAGAEGGDLGWFSAEQMVPEFSQAAFALTPGTYSKEPVKSQFGWHVIKLVEKRTTE 282
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ L ++++L+ + + L++ +
Sbjct: 283 APAFEQVRDQLASELSRELITAKLDTLRAGVKIE 316
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 4/135 (2%)
Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
+++ D L+ Y+ + E ++ + +A L KG F LA+E+
Sbjct: 167 QVTEDALRERYKTFAAEQSGREEAHASHILLDTEDQAKAVIADLDKGGDFAALAKERSTD 226
Query: 307 L---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
LG FS E + + + F+L + FG+ + + + + +
Sbjct: 227 PAGAEGGDLGWFSAEQMV-PEFSQAAFALTPGTYSKEPVKSQFGWHVIKLVEKRTTEAPA 285
Query: 364 FQEVKKDIANQMRIT 378
F++V+ +A+++
Sbjct: 286 FEQVRDQLASELSRE 300
>gi|78224732|ref|YP_386479.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
metallireducens GS-15]
gi|78195987|gb|ABB33754.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
metallireducens GS-15]
Length = 333
Score = 66.0 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/198 (13%), Positives = 62/198 (31%), Gaps = 14/198 (7%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+T + +++ +P + + + V + + + L +
Sbjct: 3 KTLITATLVLIATLP-------SPSHAEVVNRILAVVNDEIITSYAVEKEKATILKEAER 55
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ LD+ L+ L+ ++Q + ++ ++ V I +
Sbjct: 56 QQPPPPPESLVH---LDETALNRLIDKKLVEQKVRELDIKVSEEEVRQAIEDVK----RQ 108
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
NK S + VS LA +G++ +Y + L R +V V +
Sbjct: 109 NKLSQESLVSALANQGLSFDQYKVQIREQLERLRLVSQEVRSKIQVGEREMREYYEANPG 168
Query: 190 RSVDYIVLNNRHVPAIAD 207
R R++ D
Sbjct: 169 RFGGEENFRARNIYFKLD 186
Score = 37.9 bits (85), Expect = 5.0, Method: Composition-based stats.
Identities = 9/116 (7%), Positives = 37/116 (31%), Gaps = 6/116 (5%)
Query: 511 SKEGKNFRDIGKNLGAS-LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
+++GK+F ++ + + + + V +G
Sbjct: 208 ARDGKDFAELARQHSDDPAAKNTGGDLGTFRKGDILPEFEESLIKMKPGEVSDLIYVSG- 266
Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ K+ G + ++ + + + +++ + +A L+ ++ +
Sbjct: 267 GLHIVKLEARFAGTPKPFEQVKAEVEDILYRKKSEERFNQWVADLRKGAAIEIRQE 322
>gi|258593267|emb|CBE69606.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [NC10
bacterium 'Dutch sediment']
Length = 351
Score = 66.0 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 9/191 (4%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+++L F G + V V + + Q + I ++
Sbjct: 37 VILLLSVFAASGADAVIL----DRIVAVVNDDVITLTDVQEEGIQAIRRIVRETLGAERE 92
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
RS ++ILD L+ Q +E + I ++ S +
Sbjct: 93 RLLRSTE--RQILDELILRRLQLQEATKEKIETAPAEIQSAIEELK---KRNGLASDEEL 147
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ L+RE ++E+++ + T +V V Q +++ +
Sbjct: 148 RAALSREQLSEEQFRKGIADQVMLTKLVARRVRAKVVVLDEEVQQYYEQRQDQFREIPQF 207
Query: 198 NNRHVPAIADP 208
RH+ P
Sbjct: 208 KIRHLLVATPP 218
Score = 42.9 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 35/122 (28%), Gaps = 5/122 (4%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+ K + K+G F + K L ++ ++ + + P+
Sbjct: 228 AKKRIEEAQTLLKKGTQFATVAKQYAEGPLASSSGEVWTMKHGELAPELEQAALALPIGQ 287
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYS 615
I + + V G D+ L + + I L+++ +
Sbjct: 288 -PSGIITTPAGFHLIVVEERVPGQTLSFDQVKERLRALLFEQKTETKFKEWIESLRTKAN 346
Query: 616 VT 617
V
Sbjct: 347 VE 348
>gi|108758581|ref|YP_628738.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
gi|108462461|gb|ABF87646.1| peptidylprolyl cis-trans isomerase [Myxococcus xanthus DK 1622]
Length = 325
Score = 66.0 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/366 (12%), Positives = 100/366 (27%), Gaps = 65/366 (17%)
Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
G A + V R + S E+ ++ + + L K
Sbjct: 18 GSGGAAHAELVDKVAAVVNRDIIALSEVQQRAAPEMARVND---PDPRKRGEQRLQLMKT 74
Query: 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
LD L+ ++ I +G+ A V +A ++N F L EG+
Sbjct: 75 ALDTLIGEKLMESEIAQLGITASEAEVDELVADV---RQQNNITDPAQFEQLLLGEGLTM 131
Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
Y D K + R ++ M VG
Sbjct: 132 ATYRDMMRKRILRDRLLRMKVG---------------------------------PQVKI 158
Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
+ L + + Y + + E ++ A+ + +
Sbjct: 159 TEEDLKAAYTQ--------------YTRMESGDSEVHARHILVQVDAKATAEQVEAAKKR 204
Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
+ + ++ +G LG F + + +
Sbjct: 205 AEAIATEARRPGMDFASLARARSEGPSAAD----------GGDLGWFKRGVMVPA--FEK 252
Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
+G + + +FG+ + V + S++E++ + ++ K + + +
Sbjct: 253 AAFGLPEGGVSEPVRTNFGWHVLKVEERRTVAAASYEEMRPKLEGKLLQEKTEKFLDQYV 312
Query: 389 KRLEEF 394
+ L +
Sbjct: 313 QELRQK 318
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 40/131 (30%), Gaps = 5/131 (3%)
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
T + E +A + E + G +F + + + + +
Sbjct: 194 TAEQVEAAKKRAEAIATEARRPGMDFASLARARSEGPSAADGGDLGWFKRGVMVPAFEKA 253
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI----SYLTQMMNKDLLDSVI 607
F P V P+ + V KV + ++ L Q + LD +
Sbjct: 254 AFGLPEGGV-SEPVRTNFGWHVLKVEERRTVAAASYEEMRPKLEGKLLQEKTEKFLDQYV 312
Query: 608 AYLKSQYSVTV 618
L+ + +V V
Sbjct: 313 QELRQKANVDV 323
>gi|330830997|ref|YP_004393949.1| peptidylprolyl cis-trans isomerase SurA [Aeromonas veronii B565]
gi|328806133|gb|AEB51332.1| Peptidylprolyl cis-trans isomerase SurA [Aeromonas veronii B565]
Length = 434
Score = 66.0 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/185 (16%), Positives = 64/185 (34%), Gaps = 10/185 (5%)
Query: 15 KIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K + +L F + + V + V S ++ ++ + +Q+ G
Sbjct: 5 KTLIALLTAGMFGAMSQAALAAPELMDKVLAVVNKDVVLSSQ-QDALVNKVKLSAQESGQ 63
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ + L K+ LD L+ + Q E GL+ ++ I DNK +
Sbjct: 64 SLPDD----ATLRKQALDRLIQESLQLQLAERQGLKISDTQLEQAIQGIAA----DNKMT 115
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D ++LAREG+ +Y + + + +V V + + + +
Sbjct: 116 LDQLRAQLAREGMTYAQYREEVRREILMNEVRRNQVRRRINISEQEVKQVVEILKKQGQQ 175
Query: 194 YIVLN 198
+
Sbjct: 176 QNEYH 180
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 17/272 (6%), Positives = 67/272 (24%), Gaps = 8/272 (2%)
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
++ + + + ++
Sbjct: 159 EQEVKQVVEILKKQGQQQNEYHVGHIQIALPDNPTAAQLDAAKSKIERILAALKQGADFR 218
Query: 414 DLPLVDFAG--KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
L + + G G P + L + V++ ++
Sbjct: 219 KLAIAESNGPKALEGGDWGWMSPQEMPTLMAEAVQGAKKGDIVGPLRSGAGLHIVKVFDT 278
Query: 472 IPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
+ EV + + + E+ + ++ + +F + + +
Sbjct: 279 KGQQQVMQTEVKARHILIKPSIILSEEKAKGMLDGILHDIKSGKASFASMAEKYSEDPGS 338
Query: 531 TNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
Q + ++ + + V + P + + +V + + +K +
Sbjct: 339 AVQGGELGWSDPNVYVPEFRDMVNRLQPGQI-SAPFRTSHGWHIVQVEDRRSQDATDKAQ 397
Query: 590 FISYLTQMMNK---DLLDSVIAYLKSQYSVTV 618
+ N+ + + + L+ + + +
Sbjct: 398 EQRAYQLIYNRRFVEESQAWLDELRDEAYIQI 429
>gi|15595791|ref|NP_249285.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
PAO1]
gi|9946466|gb|AAG03983.1|AE004495_7 peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
PAO1]
Length = 430
Score = 66.0 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S ++ + ++ G + E L +++L+ L+
Sbjct: 31 DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G+ + + + N S + F + L R+G++ + + + +
Sbjct: 86 QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQTALTRDGLSYADAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 VISRVRQRRVA 152
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 4/194 (2%)
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
Q + G V P G ++ ++++E +EV
Sbjct: 238 WRKAAQLPQPFDSMIGSLAVGDVTEPVRTP-GGFIILKLEEKRGGSKMVRDEVHVRHILL 296
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +E + K Q + E + G++F ++ K+ + ++ +
Sbjct: 297 KPSEIRSEAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDPEALVPEF 356
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSV 606
QV + + P + + + +V + EK + +S L + L +
Sbjct: 357 RQVMNDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKYDEELQAW 416
Query: 607 IAYLKSQYSVTVHD 620
+ ++ + V +
Sbjct: 417 LRQIRDEAYVEIKQ 430
>gi|206900652|ref|YP_002251221.1| foldase protein PrsA [Dictyoglomus thermophilum H-6-12]
gi|206739755|gb|ACI18813.1| foldase protein PrsA [Dictyoglomus thermophilum H-6-12]
Length = 355
Score = 66.0 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/293 (7%), Positives = 76/293 (25%), Gaps = 12/293 (4%)
Query: 9 SRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + KI +V F++ G ++ + V+ + V + +
Sbjct: 2 KKHSIFKILFIVFVAIFILGGAFVALVYHQMKNYPVLKINGMPVSRQEYKDRLNFIKTQY 61
Query: 68 SQKIGFVVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
S G + + + + + ++ + ++ + + G+ V +
Sbjct: 62 SIMFGVDFTTTQGQKMLSQVKEETIKDIARWKIVQAETKKRGISVSEKEVETRLKEIEKE 121
Query: 126 HGKDNKF---------SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+F + F L + + K + D + +
Sbjct: 122 FPSVLQFEITLSQYGYDRNTFKEELRKNLLMRKLMDEIGKDEKVTEDEIKKYYNENIKLF 181
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ K + + + + ++ E + I+
Sbjct: 182 EHPKEYKVYSIFIKDEKKAKEVYNELLSNKITFTDAAKKYSEDTTTKDSGGDLGFITQGT 241
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
++ + +++ + ++ Y + E P + E
Sbjct: 242 LPEEVEKVTFTLPLNQISKPIKTDEGYYITKVTEIKEAYTTPYFQAKAEIEDK 294
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 39/319 (12%), Positives = 86/319 (26%), Gaps = 17/319 (5%)
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
K I + + G F +++ N P +++ I Q
Sbjct: 1 MKKHSIFKILFIVFVAIFILGGAFVALVYHQMKNYPVLKINGMPVSRQEYKDRLNFIKTQ 60
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
I + +++ + T D + + + K+V+ +
Sbjct: 61 YSIMFGVDFTTTQGQKMLSQVKEETIKDIARWKIVQAETKKRGISVSEKEVETRLKEIEK 120
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI--KESIPARDRKLEEVLTDVKKDWKT 492
+L +T + ++ E +E+ ++ K
Sbjct: 121 EFPSVLQFEITLSQYGYDRNTFKEELRKNLLMRKLMDEIGKDEKVTEDEIKKYYNENIKL 180
Query: 493 VKTAEEVS---------SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
+ +E KA ++ E F D K T + + +
Sbjct: 181 FEHPKEYKVYSIFIKDEKKAKEVYNELLSNKITFTDAAKKYSEDTTTKDSGGDLGFITQG 240
Query: 544 -FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV----GPVQEKDKFISYLTQMM 598
+ F+ P+ + PI+ Y + KVT K Q K + L
Sbjct: 241 TLPEEVEKVTFTLPLNQI-SKPIKTDEGYYITKVTEIKEAYTTPYFQAKAEIEDKLLYDK 299
Query: 599 NKDLLDSVIAYLKSQYSVT 617
+ + + S+ +
Sbjct: 300 RSKVFNKWLEEQVSKAKIE 318
>gi|297569281|ref|YP_003690625.1| SurA domain protein [Desulfurivibrio alkaliphilus AHT2]
gi|296925196|gb|ADH86006.1| SurA domain protein [Desulfurivibrio alkaliphilus AHT2]
Length = 326
Score = 66.0 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/173 (9%), Positives = 46/173 (26%), Gaps = 6/173 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V Q + S + G ++L ++ +
Sbjct: 34 DRVVAEVNGQIITLSELEAEMATIGEDFLR--GVPAGERAKARQEAQSQVLSGMIDQILV 91
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
++ + G+ + +A+ +DN+ S + + L R G ++Y +
Sbjct: 92 ERQAQRRGIFVGEREIDAAMAQIM----EDNRLSREELIRELERSGTTLEQYRQTLRTQI 147
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ ++ + V + + + D +
Sbjct: 148 LQARLLNLEVRERIVIPENRIRRYYEEHYADGSQQQGYHLLQMGFAWDGDDQN 200
>gi|226327125|ref|ZP_03802643.1| hypothetical protein PROPEN_00990 [Proteus penneri ATCC 35198]
gi|225204343|gb|EEG86697.1| hypothetical protein PROPEN_00990 [Proteus penneri ATCC 35198]
Length = 312
Score = 66.0 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 16/175 (9%)
Query: 5 IRKASRTWVAK----IFLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFINS 59
+RK + K +F+ ++ + S F+ + V V V S
Sbjct: 1 MRKTHNGKLMKNWKTLFIGLMIT--VGAATSSTTFAAQELNRVSAIVNNGVVLESDVNRM 58
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ ++ G + E+ L ++IL+ LV + Q + + ++ V I
Sbjct: 59 LQTVKMN-AKNAGQEMPDEQV----LRQQILERLVMDNIILQMAQQMQIDIPDAAVESTI 113
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
+NK S D RLA +GI+ +Y K + +V V
Sbjct: 114 QGIAA----ENKLSLDQLKKRLAADGISYNDYRQDIRKEMMLAEVRNNEVRRRIT 164
>gi|308051066|ref|YP_003914632.1| peptidylprolyl isomerase [Ferrimonas balearica DSM 9799]
gi|307633256|gb|ADN77558.1| Peptidylprolyl isomerase [Ferrimonas balearica DSM 9799]
Length = 428
Score = 65.6 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 10/152 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+L AL V V + S + G + S+
Sbjct: 6 LLMGAMAALMFGQALAQPQPLDEVAVLVNDGVILKSEIDERMTSVKRGAL-QAGQQLPSD 64
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
A L +++D L++ + Q E +GL ++ + G +
Sbjct: 65 AA----LRTQVIDRLIAESLQLQMAERMGLVISDIQLDQTLENMAREQGMTLQ----GLR 116
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ +G N Y + + ++ V + V
Sbjct: 117 QEIESDGTNYAAYREQIRREITIGQVQRIQVQ 148
Score = 38.3 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 24/276 (8%), Positives = 81/276 (29%), Gaps = 7/276 (2%)
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ I P + E+ + Q + + A + E+
Sbjct: 146 QVQRRVQISPQEINTLVEMINEQGLQDAEFHVGHILIDFGGDETAARARADKVLELLEGG 205
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL-LFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ K ++G + + E LF KD + +
Sbjct: 206 ADFAQTALAASSGPKALEGGDWGFMNINEMPTLFAEVVKDAKKGDIIGPIKSGAGFHIIT 265
Query: 468 IKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
I ++ +++ EV + + + + + ++ + + +F ++ +
Sbjct: 266 IYDTRGQEVQEVAEVNARHILLKPSPILSEDMAKTLLDEFMADVKDGKADFGELAREHSD 325
Query: 527 SLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + + + + + V P + + V ++ + +V
Sbjct: 326 DPGSAARGGDLGWADPNMYVPAFRDTLARLKVGEY-SEPFRSSHGWHVVQLLDRRVTDAT 384
Query: 586 EK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
++ D+ L + + +++ +++ + V
Sbjct: 385 DQANSDRAYQLLFRRKFGEQVNAWQEEMRAAAYIEV 420
>gi|254243688|ref|ZP_04937010.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
2192]
gi|126197066|gb|EAZ61129.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
2192]
Length = 430
Score = 65.6 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S ++ + ++ G + E L +++L+ L+
Sbjct: 31 DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G+ + + + N S + F + L R+G++ + + + +
Sbjct: 86 QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQAALTRDGLSYSDAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 VISRVRQRRVA 152
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 4/194 (2%)
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
Q + G V P G ++ ++++E +EV
Sbjct: 238 WRKAAQLPQPFDSMIGSLAVGDVTEPVRTP-GGFIILKLEEKRGGSKMVRDEVHVRHILL 296
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +E + K Q + E + G++F ++ K+ + ++ +
Sbjct: 297 KPSEIRSEAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDPEALVPEF 356
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSV 606
QV + + P + + + +V + EK + +S L + L +
Sbjct: 357 RQVMNDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKYDEELQAW 416
Query: 607 IAYLKSQYSVTVHD 620
+ ++ + V +
Sbjct: 417 LRQIRDEAYVEIKQ 430
>gi|291297351|ref|YP_003508749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
DSM 1279]
gi|290472310|gb|ADD29729.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
DSM 1279]
Length = 620
Score = 65.6 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/645 (8%), Positives = 143/645 (22%), Gaps = 70/645 (10%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGL---SDALFSVSGSSTVVSVGRQKVPFSSFI 57
M I R+ V + VL + F++ + + + T +V + V
Sbjct: 1 MFGINRR-----VVAVIFGVLALAFVVGSVLLFTPQGQRSTQGKTEFTVNGRPVYELDLA 55
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ Q+ I + A + D ++ L Q + G +
Sbjct: 56 RA--QQSDPILSTNPQGLLKNLAEVNFV-----DRMIVTTALLQDTAR--VRVSSGELKK 106
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
E+ G K +D F L + G + + + + V P+
Sbjct: 107 ELDTIKERFGLQKKEDYDRF---LTQVGYTDSQLRNELRDQIRINKRVEEIQKKAEPTEE 163
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ ++ + + R + + + ++ A
Sbjct: 164 EMRLYFE-LNRDQYKNEERVQARQIVVDDKTTADKIYAEVTAPGADFAAIAKANSKLNAE 222
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ S + Q+ P + ++K
Sbjct: 223 QGGALGAQAGQSEPGPVTRVVFPNAVAEAVFKLRDGQISKPIEAGGRFYIVKVEKYLPAG 282
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ E+ K + + + + K V
Sbjct: 283 DVKFEEVKDRVKEDAKRIKGQGALEAYIEELRAKANVKFAEGSTYKFENPVVAKVGDTEI 342
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
V+ Q+ + E++ + + L
Sbjct: 343 KLTEVTQSVFANPQVPQLLQQ---------------------GLGELAVQFFMPQTLEQL 381
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ + + + + + Y +
Sbjct: 382 ISREAAYQFAQTLGQPFFGSKSDVVAQAQQWKTRDITVTEAEVRRYYDANLANFT----- 436
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
K K + + +G D+ K ++ +N
Sbjct: 437 IPASAKVQAVNFKKEDKAKADAFRA-------AALKGGKLEDLAKANNGTVQDYGVVN-- 487
Query: 538 DNENKFFGYDGISQVF-------SGPVEMVKCFPIENGLSYVVFKVTNSKV----GPVQE 586
VF GP+ V S+ V V + K +
Sbjct: 488 ---PGTMPPVPNRLVFLTRGTFPKGPLGEVSEVVKLEDGSFQVLIVNDRKAEVLRPFEEV 544
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+++ + + + ++ V + + L ++
Sbjct: 545 REEARQQVLASRRAEAAQKWLEEVRKAAKVENNLQKVLTALTPKE 589
>gi|33598180|ref|NP_885823.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
parapertussis 12822]
gi|81713639|sp|Q7W4J5|SURA_BORPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|33566738|emb|CAE38950.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
parapertussis]
Length = 519
Score = 65.6 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 9/135 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + + K + ++ G V E L K++L L+
Sbjct: 55 DGIAAIVNKDVITLREVREASKLASADLQKR-GIQVPDE----RTLQKQVLQRLIMERLE 109
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q ++ +G+ D +V I NK + + + + G+ ++Y +
Sbjct: 110 RQEVDRMGIRVDEAQVDQAINMIAS----RNKITPAAMRAEIEKSGVTWEQYRKSLRDDI 165
Query: 160 SRTDVVGMFVGGMRP 174
+ V
Sbjct: 166 RMDRLRQRAVDANII 180
>gi|116054322|ref|YP_788767.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218889335|ref|YP_002438199.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
LESB58]
gi|254237192|ref|ZP_04930515.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
C3719]
gi|296387100|ref|ZP_06876599.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
PAb1]
gi|115589543|gb|ABJ15558.1| peptidyl-prolyl cis-trans isomerase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169123|gb|EAZ54634.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
C3719]
gi|218769558|emb|CAW25318.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
LESB58]
Length = 430
Score = 65.6 bits (157), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S ++ + ++ G + E L +++L+ L+
Sbjct: 31 DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G+ + + + N S + F + L R+G++ + + + +
Sbjct: 86 QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQAALTRDGLSYADAREQVRREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 VISRVRQRRVA 152
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 4/194 (2%)
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
Q + G V P G ++ ++++E +EV
Sbjct: 238 WRKAAQLPQPFDSMIGSLAVGDVTEPVRTP-GGFIILKLEEKRGGSKMVRDEVHVRHILL 296
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +E + K Q + E + G++F ++ K+ + ++ +
Sbjct: 297 KPSEIRSEAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDPEALVPEF 356
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSV 606
QV + + P + + + +V + EK + +S L + L +
Sbjct: 357 RQVMNDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKYDEELQAW 416
Query: 607 IAYLKSQYSVTVHD 620
+ ++ + V +
Sbjct: 417 LRQIRDEAYVEIKQ 430
>gi|281357340|ref|ZP_06243829.1| hypothetical protein Vvad_PD2435 [Victivallis vadensis ATCC
BAA-548]
gi|281316371|gb|EFB00396.1| hypothetical protein Vvad_PD2435 [Victivallis vadensis ATCC
BAA-548]
Length = 540
Score = 65.6 bits (157), Expect = 3e-08, Method: Composition-based stats.
Identities = 71/537 (13%), Positives = 156/537 (29%), Gaps = 55/537 (10%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIW---GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
K SR W+ F +V+ V FL + G FS S + V + +
Sbjct: 10 FHKHSR-WLFGGFTIVIIVSFLGFLTPGQFGCDFSDPESHEFGVAFGKPVTYRDLREMGR 68
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
I + V++ + NL L Q E +G+ A V + +
Sbjct: 69 NV--QIINHVMSGVSNREID--------VQNLFGPYCLLQAAERMGIVASDKEVAEMLRQ 118
Query: 122 SPLFHGKDNKFSHDVFVSRL---AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
P KD KFS +++ L + GI+ +E+ + M+ + G+ +
Sbjct: 119 MPTLQ-KDGKFSMELYNEMLAGYQKAGISAEEFNNAIRMMVMLNKLDREIAAGVVVTPGE 177
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY--------- 229
++ R + + + N + ++FEK + Y
Sbjct: 178 VESFYRRLYGKYRIKGALFNADTFKDKVPRDARKMQEFFEKNRSEYVIQAKLSALVVAFP 237
Query: 230 ---KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
+ + +K +N L + + ++Y ++ + ++
Sbjct: 238 YAGFKAEAAKAATAAELEKFYKANTALFDDKDGKTQEYAKVAGEVKKKFIEARSRDLATR 297
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL-------------- 332
+ + E + K L K I + D ++
Sbjct: 298 RAYDFASAAYEAVGEAENKVEVFRELARKGKLDIIETGRFDIDATVVGKINSPVLIRQLG 357
Query: 333 ---AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
T + G + + EV K + + ++ + +E K
Sbjct: 358 AALNAGNPVTNAVPGDDAAYVGFTLEQIAARPAMLNEVAKQLNDDYVAAESLKLAREAAK 417
Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
+ + + + + + + + P + + + P
Sbjct: 418 AELDRIKALKPAERAKAFAALKNCKVEEFEAS-------VSQMPPAGFEYAMQAAVRLHP 470
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
V P+G+ ++ E IPA ++ E ++ K + +L
Sbjct: 471 GELTPVVDTPNGA-AIAELLERIPADMKEFEAKKALYTGIFRQRKEQMARLAFEEEL 526
>gi|269137960|ref|YP_003294660.1| peptidyl-prolyl cis-trans isomerase SurA [Edwardsiella tarda
EIB202]
gi|267983620|gb|ACY83449.1| peptidyl-prolyl cis-trans isomerase SurA [Edwardsiella tarda
EIB202]
gi|304558008|gb|ADM40672.1| Survival protein SurA precursor [Edwardsiella tarda FL6-60]
Length = 435
Score = 65.6 bits (157), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 9/150 (6%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + + + V V V S K Q + +
Sbjct: 7 LILGVALCANTAFAAPQVVDKVVAIVDNGVVLESDVDGMMKSVKLNAQQ-----ADQQLP 61
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L +IL+ L+ Q + +GLE + I + N S SR
Sbjct: 62 DNATLRHQILERLIMDNVQLQMAKRMGLEISDSELDNAINGI----AQQNHISMQQLRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA +G++ K Y K + ++V V
Sbjct: 118 LAADGLDYKTYRAQIRKEMLISEVRNNEVR 147
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 14/198 (7%), Positives = 49/198 (24%), Gaps = 7/198 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G+ + LF + + +++ + A E
Sbjct: 229 GEMGWGRLQELPTLFAEALQSAKKGDIVGPIRSGVGFHILRVNDLRGDQANVSVTEVHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V + + +K L + + F K + + +
Sbjct: 289 HILLRTSPVMSDAQARAKLEALSAQITSGKITFEQAAKEYSQDPGSAQKGGDLGWAVPSM 348
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + + P+ + + + ++ +K++ L
Sbjct: 349 YDPAFRDALMKLNKGEISQ-PVHSNFGWHLIQLLGTRQVDRTDEAQKERAYRMLFNRKFA 407
Query: 601 DLLDSVIAYLKSQYSVTV 618
+ + + ++ V +
Sbjct: 408 EEAQTWLQEQRAAAYVKI 425
>gi|89094171|ref|ZP_01167114.1| peptidyl-prolyl cis-trans isomerase SurA [Oceanospirillum sp.
MED92]
gi|89081646|gb|EAR60875.1| peptidyl-prolyl cis-trans isomerase SurA [Oceanospirillum sp.
MED92]
Length = 430
Score = 65.6 bits (157), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 43/154 (27%), Gaps = 9/154 (5%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
+ + L+ + V + S + + +
Sbjct: 8 LISAAALSLLLPVSHSHAAEIPLDRIAAVVNEGIILQSELEQRTSITREQLQSR-NTRIP 66
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
E L K++L+ L+ + Q E G+ ++ G IA N S D
Sbjct: 67 PEHI----LRKQVLNRLIIESIQKQMAEQNGVRVSDSQLNGAIANIAA----QNGLSIDQ 118
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
F L EG + + + + V V
Sbjct: 119 FREALIAEGRDYNQAREQIRNEMLINSVQQNLVN 152
>gi|218297017|ref|ZP_03497694.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermus aquaticus
Y51MC23]
gi|218242572|gb|EED09109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermus aquaticus
Y51MC23]
Length = 603
Score = 65.6 bits (157), Expect = 3e-08, Method: Composition-based stats.
Identities = 58/431 (13%), Positives = 121/431 (28%), Gaps = 62/431 (14%)
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK-- 305
+ +E++ +E ++E Y + Q+V ++K A+E K G+ F LA++ K
Sbjct: 160 PTPEEVRFYFEVHQEDYKTEPRVQARQIVVDDKKVAEEVLAKAKAGEDFTALAKKYSKVG 219
Query: 306 SLSDISLGSFSKEYIPDV-------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+ +LG+ E P K I Y I V P
Sbjct: 220 AEQGGALGAAPGESAPKPVTKVVFPEKVAEAVFALKGPGLVGPIEAGGRYYIVKVEAYLP 279
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKR----------------LEEFLALGTSMD 402
+F+EVK + KA+ ++ + + +
Sbjct: 280 PKVPTFEEVKDQVEKDAGDAKANGALEAYLEDLRKKAQVRFAEGVGYVYKNPAVATVNER 339
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS----KDHTVAL 458
EI + + + A E+A + Q L R+ ++ +
Sbjct: 340 EILLSQVLQPVFSNQQTAALIQQGLGELAVQFFLPQTLERLVDQEILVGAAKKSGKPFIG 399
Query: 459 PDGSYMWVQIKESIPARDRKLEEVL---------------TDVKKDWKTVKTAEEVSSKA 503
+ E +V + KA
Sbjct: 400 SKDEVAQAYLLYETRDVTATEAEARRFYAENPAFFTIPASAEVVGVVFQEEA------KA 453
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG--ISQVF-SGPVEMV 560
K + + + K G ++ +N + + F G + V
Sbjct: 454 KAFREAALKA-SDLQALAKAHGGTVTEYGAVN-PGQLPAVLDRLVFKVKEAFPKGSLGEV 511
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY----LTQMMNKDLLDSVIAYLKSQYSV 616
++ V + N K ++ + + ++ ++I L+ + V
Sbjct: 512 SEVVKLEDGTFTVLLIKNRKPEELKPFEAVKEEALEGVINRKRQEKAQALIQKLRQEAKV 571
Query: 617 TVHDNLIQRYL 627
N + + L
Sbjct: 572 E---NRLAQVL 579
Score = 54.9 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 21/174 (12%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS--------SKANQLVLEYSKEGK 515
+ ++++ + EEV + + KT V K + VL +K G+
Sbjct: 147 IQKRLEQVRSSAKPTPEEVRFYFEVHQEDYKTEPRVQARQIVVDDKKVAEEVLAKAKAGE 206
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKF--------FGYDGISQVFSGPVEMVKCFPIEN 567
+F + K F VF+ + PIE
Sbjct: 207 DFTALAKKYSKVGAEQGGALGAAPGESAPKPVTKVVFPEKVAEAVFALKGPGL-VGPIEA 265
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYSVT 617
G Y + KV V ++ + L++ + L+ + V
Sbjct: 266 GGRYYIVKVEAYLPPKVPTFEEVKDQVEKDAGDAKANGALEAYLEDLRKKAQVR 319
Score = 41.4 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 11/85 (12%)
Query: 39 GSSTVVSVGRQKVPFSSFINSW---KQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
+ V +V +++ S + +Q +I Q +G + L+ LV
Sbjct: 329 KNPAVATVNEREILLSQVLQPVFSNQQTAALIQQGLG------ELAVQFFLPQTLERLVD 382
Query: 96 GATLDQFIEDIG--LEADHGRVWGE 118
L + G V
Sbjct: 383 QEILVGAAKKSGKPFIGSKDEVAQA 407
>gi|190572865|ref|YP_001970710.1| putative survival protein SurA [Stenotrophomonas maltophilia K279a]
gi|190010787|emb|CAQ44396.1| putative survival protein SurA precursor [Stenotrophomonas
maltophilia K279a]
Length = 447
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/172 (10%), Positives = 45/172 (26%), Gaps = 9/172 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + S + + + + E L +++L+ LV
Sbjct: 33 DRIAAVVDEDVILQSELQRAIANIKAQYAGRENQ-LPPEDV----LSRQVLERLVLVKLQ 87
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ G+ + + +G + D RLA +GI+ ++ +
Sbjct: 88 VARAQGSGIRVSDQELNQAMNSIAQQNGSNL----DALRQRLAHDGIDFNDFRASVRDEI 143
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ + F + A Y + + ++
Sbjct: 144 TVQRLRQSFAQSRISVSEGEVDAALKQQATVGNQYHLAHILVALPDGANADQ 195
>gi|284046681|ref|YP_003397021.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei
DSM 14684]
gi|283950902|gb|ADB53646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei
DSM 14684]
Length = 390
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/193 (10%), Positives = 56/193 (29%), Gaps = 41/193 (21%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFIN 58
ML + K R + + F + S + S+ V SV + + +
Sbjct: 1 MLSSVTKTLR--IVLALCAFFVLSFTVAACGGDDESGNDVPSNAVASVDGTPITKADYER 58
Query: 59 -----------------------------SWKQELGMISQKIGFVVNSERARSVGLDKKI 89
+ +++ + + RA+ ++ +I
Sbjct: 59 WALINAKSPGAQGSPVIIPDPPNYERCIAALERQSRDARARTTPSDSQLRAQCRQVETQI 118
Query: 90 LDN----LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
+ L+ +++ +++G+ V + + + S L R G
Sbjct: 119 MQQSMALLIQADWIEKEADELGVSVSDADVQRTLEETKRQSFPR----RGDYESFLRRSG 174
Query: 146 INEKEYIDHYTKM 158
+ E++ +
Sbjct: 175 MTERDILFRLRIQ 187
>gi|126641684|ref|YP_001084668.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
baumannii ATCC 17978]
gi|126387568|gb|ABO12066.1| peptidyl-prolyl cis-trans isomerase precursor [Acinetobacter
baumannii ATCC 17978]
Length = 180
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 62/186 (33%), Gaps = 14/186 (7%)
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
+F K+ + + L +G +WV++++ A + L + + +VK K +
Sbjct: 1 MFNDDVKNGDRNASSNIQLANGDTVWVKVRDYHAAGVKPLAQAMNEVKAKVIDEKARKAA 60
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+K ++ E+ + + + + R ++ FS P
Sbjct: 61 QAKIATMLTEFKT--QPAEQVVAKNKVAFESAGVFTR----SQGLKRAIERAAFSVPTPK 114
Query: 560 -----VKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
V + N L V NS P + + Q + +L+ YLK
Sbjct: 115 PGMWSVTTANLPNELVVVAVSNVNSAAVNAMPADQLQQLKQLYRQSRGQQILEDYSEYLK 174
Query: 612 SQYSVT 617
S +
Sbjct: 175 SHAKIK 180
>gi|242279456|ref|YP_002991585.1| SurA domain protein [Desulfovibrio salexigens DSM 2638]
gi|242122350|gb|ACS80046.1| SurA domain protein [Desulfovibrio salexigens DSM 2638]
Length = 312
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 56/179 (31%), Gaps = 10/179 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
++ + A F+ + V V + V + K V
Sbjct: 4 IIAGFLASMIIGSASFATAEEKVVDGIVAVVNGEVVTMYELNRKLAPIMKQFDGKSLSAV 63
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+E+ + + ++ILD ++ +DQ + + ++ V E+ + + S +
Sbjct: 64 EAEQLKR--VRQQILDRFINEIIIDQESKRLKVDVSAQDVDNEVKAIK----EKSNLSDE 117
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
F +L + N + + K + + ++ V +A +
Sbjct: 118 DFERQLELQKTNLAAFKEKIGKDIRKHRLLSYKVKSKVVVTDDEIKAAWNSTRTDQGEV 176
>gi|26987145|ref|NP_742570.1| survival protein SurA [Pseudomonas putida KT2440]
gi|24981777|gb|AAN66034.1|AE016232_7 survival protein SurA [Pseudomonas putida KT2440]
Length = 439
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S + I+++ G V + L++++L+ L+
Sbjct: 31 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPP-----TSALEQQVLERLIVENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S D F + LAR+G++ + + + +
Sbjct: 86 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFDDAREQVKREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/216 (8%), Positives = 63/216 (29%), Gaps = 5/216 (2%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ ++ + +P+G + ++ +
Sbjct: 223 ANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEITQPIRIPNGFIILKLEEKRGGS 282
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ +EV + +E + + + + + K G++F ++ K+ +
Sbjct: 283 ENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYDRIKNGEDFGELAKSFSEDPGSALNG 342
Query: 535 NRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
++ + + Q+ + V P + + V +V + E+ +
Sbjct: 343 GDLNWVDPNSLVPEFREQMANAQQG-VVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQA 401
Query: 594 L---TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L + L + + ++ + V + +
Sbjct: 402 LSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGADQA 437
>gi|313496769|gb|ADR58135.1| Chaperone surA [Pseudomonas putida BIRD-1]
Length = 439
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S + I+++ G V + L++++L+ L+
Sbjct: 31 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPP-----TSALEQQVLERLIVENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S D F + LAR+G++ ++ + + +
Sbjct: 86 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFEDAREQVKREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/216 (8%), Positives = 63/216 (29%), Gaps = 5/216 (2%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ ++ + +P+G + ++ +
Sbjct: 223 ANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEITQPIRIPNGFIILKLEEKRGGS 282
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ +EV + +E + + + + + K G++F ++ K+ +
Sbjct: 283 ENVLRDEVHVRHILIKPSEIRSEAATQQLAERLYDRIKNGEDFGELAKSFSEDPGSALNG 342
Query: 535 NRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
++ + + Q+ + V P + + V +V + E+ +
Sbjct: 343 GDLNWVDPNSLVPEFREQMANAQQG-VVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQA 401
Query: 594 L---TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L + L + + ++ + V + +
Sbjct: 402 LGVLRNRKYDEELQTWLRQIRDEAYVEIKLPGADQA 437
>gi|213420304|ref|ZP_03353370.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 205
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/207 (18%), Positives = 88/207 (42%), Gaps = 3/207 (1%)
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
++ L +V I +P F D KF ++ + + + + G+ +Y L+
Sbjct: 1 RELKLGISDEQVKQAIFATPAFQV-DGKFDNNRYNAIVNQMGMTADQYTQALRNQLTTQQ 59
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
++ G D+ + R V V++ + A ++ ++ ++++ K
Sbjct: 60 LINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYYDQNKVR 119
Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
+ PE R+SYI D + +S+ ++QA Y+++ +++ PE + + +A
Sbjct: 120 FMTPEQFRVSYIKLDAATMQA--PVSDADIQAYYDQHVDQFTQPERIRYSIIQTKTEDDA 177
Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDI 310
+L KG+ F LA+E+ +
Sbjct: 178 KAVLDALNKGEDFATLAKEKSTDIISA 204
>gi|325981517|ref|YP_004293919.1| SurA domain [Nitrosomonas sp. AL212]
gi|325531036|gb|ADZ25757.1| SurA domain [Nitrosomonas sp. AL212]
Length = 441
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 49/128 (38%), Gaps = 9/128 (7%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + + K + + Q+ + L++++L+++++ Q
Sbjct: 39 IVAVVNEDVITRHELDEAIKTAISRMQQQG-----MQIPDRHILEEQVLESVITKRIQIQ 93
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+++GL + I R +DN+ + F + L +GI+ ++ + + +
Sbjct: 94 HAQEVGLSVAETELDETINRI----AEDNQLTLPEFHTVLENDGISYNKFREEIREEMII 149
Query: 162 TDVVGMFV 169
+ V
Sbjct: 150 ARLKEREV 157
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 18/269 (6%), Positives = 63/269 (23%), Gaps = 11/269 (4%)
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR-----EKIVSI 413
Q + A + + + E++ + I
Sbjct: 167 EVDNFLQTQEASAVGDDEYRLAHIMILVPENMTADQIQQRAERAEMALTRLREGAEFSQI 226
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D A G + F + ++ + ++
Sbjct: 227 VSEFSDAADAKNGGIIEWRPISQMGPAFAQILEALQPGDITSIVQSPNGFHIFKLLGRRA 286
Query: 474 ARDRKLEEVLTDVKKDWK--TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ T + T+E + + G++F ++ + +
Sbjct: 287 QETPTVIIDQTHARHILIKINELTSENDGKLKILALKDRLDRGESFEEVARLYSEDASAS 346
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ---EKD 588
+ + + +V + + P+ + + + +V + + +
Sbjct: 347 SG-GDLGWLSPGDTVPDFERVMNALLPGEISDPVRSQFGWHLIQVMERRTQDISLDRRRQ 405
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ ++ + L+ Q +
Sbjct: 406 TARQAIRTRKADVVIQDWLQQLRDQAYIE 434
>gi|332994413|gb|AEF04468.1| survival protein surA [Alteromonas sp. SN2]
Length = 426
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 16/205 (7%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
++ + LV + F S V V V + V S
Sbjct: 3 FIIRALLVSAVLSF-----SSYAQEVMLDRVAVIVDQGVVLQSEVDALMNDVKRNAEAN- 56
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
G + S+RA L + ++ L++ + Q + +G++ ++ IA
Sbjct: 57 GQDLPSDRA----LRTQAIERLITKSLQLQMAQRMGIQISDPQLEQTIANIAANQNTTV- 111
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSR--TDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
D +L EGI ++Y + + + + + +
Sbjct: 112 ---DELRRQLRLEGIAYEDYREDIREEIVMGEVRRANVRRRVYITDQERETLIELMEQQG 168
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLT 214
+ L + + +DPS+ +
Sbjct: 169 AEQEEYRLGHILIGFPSDPSDEQID 193
>gi|148545689|ref|YP_001265791.1| SurA domain-containing protein [Pseudomonas putida F1]
gi|148509747|gb|ABQ76607.1| SurA N-terminal domain [Pseudomonas putida F1]
Length = 439
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S + I+++ G V + L++++L+ L+
Sbjct: 31 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPP-----TSALEQQVLERLIVENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S D F + LAR+G++ + + + +
Sbjct: 86 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFDDAREQVKREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/216 (8%), Positives = 63/216 (29%), Gaps = 5/216 (2%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ ++ + +P+G + ++ +
Sbjct: 223 ANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEITQPIRIPNGFIILKLEEKRGGS 282
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ +EV + +E + + + + + K G++F ++ K+ +
Sbjct: 283 ENVLRDEVHVRHILIKPSEIRSEAATQQLAERLYDRIKNGEDFGELAKSFSEDPGSALNG 342
Query: 535 NRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
++ + + Q+ + V P + + V +V + E+ +
Sbjct: 343 GDLNWVDPNSLVPEFREQMANAQQG-VVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQA 401
Query: 594 L---TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L + L + + ++ + V + +
Sbjct: 402 LSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGADQA 437
>gi|126662093|ref|ZP_01733092.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteria
bacterium BAL38]
gi|126625472|gb|EAZ96161.1| possible peptidyl-prolyl cis-trans isomerase [Flavobacteria
bacterium BAL38]
Length = 653
Score = 65.3 bits (156), Expect = 3e-08, Method: Composition-based stats.
Identities = 64/668 (9%), Positives = 182/668 (27%), Gaps = 87/668 (13%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+L FL A S + ++ F+ + + L ++ ++
Sbjct: 6 LLIFSFLFV---SAFLSAQTKEVLFTIDNHPYYNDEFVRVYNKNLDLVKDDSQKDLD--- 59
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
K LD + + IGL + N+ S +
Sbjct: 60 --------KYLDLFLGYKLKVEKANKIGL-------QNGLNYQNELKSYRNQLSKNYVND 104
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGM-----FVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ ++ Y ++ + +V + ++ N +++ +R +
Sbjct: 105 SKVTNELVKEAYDRMQQEVRASHILVLVDEGALPQDTLKAYNKVIEIKRRLDAGEDFITV 164
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
+ + + F A ++ + + + + +
Sbjct: 165 AQQTSEDPSVKENNGDLGYFSAFRMVYPFENAAYNTKVGQVSKPFRTRFGYHIVKVLDKR 224
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
+ + + + D+ ++ +++G+ F LA++ + S
Sbjct: 225 VNRGEVTVAHIMIVKQNDAAQNEKAKTTIDDIYKKIQQGEAFESLAQQFSEDKSSAPKGG 284
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
L F + + F L +K + FG+ I + P + + + +
Sbjct: 285 VLQRFGSGQLSSEEFENVAFELKEKDQISVPFQSQFGWHIVKLIEKHPVRSFDEMKFELE 344
Query: 371 IANQM---------------RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ R K + +++ + EK ++
Sbjct: 345 EKIRKDERSLLITNSLAKKLRDKYTITKDAKIIAKIKAAVNDDFYSQTWVVPEKSKELNG 404
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
++ ++ + + K D + E++
Sbjct: 405 DVLVINKDKKINAKLFLDFIAAKQKSNIKTKPIVRLVDELFEKFTEEQLIAYYNENLENE 464
Query: 476 DRKLEEVLTD-----VKKDWKTVKTAEEVS------------------------------ 500
+ + V+ + + D +
Sbjct: 465 FPEFKNVMDEYRDGLLLFDLMEKEIWNRAKNDTIGLHNYFANNIKNYQWKKRYSADILSS 524
Query: 501 --SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
K + ++ K+GK+ I + L ++N M + + F +
Sbjct: 525 TDKKIVEKAQKFLKKGKSLEYIREQLN----KDGKVNIMSKSGMYEEDYDVLSQFENLSK 580
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
V ++ + V +T+ K +E + + L ++ + LKS++++ V
Sbjct: 581 GVTSIVSKDQY-FFVVNITDEKPAGAKELSECKGKAISDYQQYLENNWVDELKSEFNIQV 639
Query: 619 HDNLIQRY 626
+ ++ +
Sbjct: 640 NQDVFAKV 647
>gi|253988050|ref|YP_003039406.1| peptidyl-prolyl cis-trans isomerase SurA [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253779500|emb|CAQ82661.1| chaperone SurA precursor (peptidyl-prolyl cis-trans isomerase)
[Photorhabdus asymbiotica]
Length = 433
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 52/434 (11%), Positives = 111/434 (25%), Gaps = 54/434 (12%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + + + V V S + + +Q G + E
Sbjct: 7 LILGLMFSVSTAFAAPQQMDKIAAVVNNGVVLESDINSLLQSVKRD-AQHAGQQIPDE-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH-----GKDNKFSHD 135
L +IL+ L+ L Q + +G+ + IA + ++ D
Sbjct: 64 --HTLRHQILERLIMDNILLQMAKQMGITIPDQTLDSTIANIAAQNHITRDQMKHRIVAD 121
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
R I ++ I R V + + + +Q N S I
Sbjct: 122 GMSFDTYRNQIRKEMLIAEVRNNEVRRRVTILPQEIDTLAKQISNQNANDSELNISHILI 181
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
L + + AV+ + + K+ + + EL
Sbjct: 182 PLPENPDQTQMEKATAVVHKIMSELKNGVDFGKLAIAYSADPQALKGGNMGWSKLQELPT 241
Query: 256 EYEKNKEKYFS-----------------------------PEIRTVEQLVFPNQKEADEA 286
+ + ++ +
Sbjct: 242 LFAAQLQSAQKGAIVGPIRSGVGFHILKVNDIRGGNATIAVTEVHARHILLRISPVMTDE 301
Query: 287 FQSLKKGK----------KFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLA 333
K + F A+E + G +S I D + D++ L
Sbjct: 302 QARAKLQQIAGDIRSGKTDFADAAKEFSEDPGSALRGGDLGWSTPDIFDPAFRDALMRLN 361
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
K G+ + IH SFG+ + + + + K + K +E+ + +
Sbjct: 362 K-GEISQPIHSSFGWHLIQLLDTRKVDKTDV-AQKDRAYRMLFNRKFTEEAQSWMQEQRA 419
Query: 394 FLALGTSMDEISRR 407
+ +++
Sbjct: 420 SAYVKILDGSDAQQ 433
Score = 45.6 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 28/371 (7%), Positives = 89/371 (23%), Gaps = 9/371 (2%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q +++ ++ E ++ ++ K+ +A + + +
Sbjct: 58 QQIPDEHTLRHQILERLIMDNILLQMAKQMGITIPDQTLDSTIANIAAQNHITRDQMKHR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ D + + + + + ++
Sbjct: 118 IVADGMSFDTYRNQIRKEMLIAEVRNNEVRRRVTILP-QEIDTLAKQISNQNANDSELNI 176
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ E + + + + + D + +
Sbjct: 177 SHILIPLPENPDQTQMEKATAVVHKIMSELKNGVDFGKLAIAYSADPQALKGGNMGWSKL 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWK 491
L + + G + +++ + A E +
Sbjct: 237 QELPTLFAAQLQSAQKGAIVGPIRSGVG-FHILKVNDIRGGNATIAVTEVHARHILLRIS 295
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGIS 550
V T E+ +K Q+ + +F D K + + + + F
Sbjct: 296 PVMTDEQARAKLQQIAGDIRSGKTDFADAAKEFSEDPGSALRGGDLGWSTPDIFDPAFRD 355
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ + PI + + + ++ V +KD+ L + S +
Sbjct: 356 ALMRLNKGEISQ-PIHSSFGWHLIQLLDTRKVDKTDVAQKDRAYRMLFNRKFTEEAQSWM 414
Query: 608 AYLKSQYSVTV 618
++ V +
Sbjct: 415 QEQRASAYVKI 425
>gi|122070665|sp|Q9I5U3|SURA_PSEAE RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
Length = 417
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S ++ + ++ G + E L +++L+ L+
Sbjct: 18 DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 72
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G+ + + + N S + F + L R+G++ + + + +
Sbjct: 73 QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQTALTRDGLSYADAREQVRREM 128
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 129 VISRVRQRRVA 139
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 4/194 (2%)
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
Q + G V P G ++ ++++E +EV
Sbjct: 225 WRKAAQLPQPFDSMIGSLAVGDVTEPVRTP-GGFIILKLEEKRGGSKMVRDEVHVRHILL 283
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +E + K Q + E + G++F ++ K+ + ++ +
Sbjct: 284 KPSEIRSEAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDPEALVPEF 343
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSV 606
QV + + P + + + +V + EK + +S L + L +
Sbjct: 344 RQVMNDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKYDEELQAW 403
Query: 607 IAYLKSQYSVTVHD 620
+ ++ + V +
Sbjct: 404 LRQIRDEAYVEIKQ 417
>gi|288940552|ref|YP_003442792.1| SurA domain-containing protein [Allochromatium vinosum DSM 180]
gi|288895924|gb|ADC61760.1| SurA domain protein [Allochromatium vinosum DSM 180]
Length = 446
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 55/458 (12%), Positives = 124/458 (27%), Gaps = 77/458 (16%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
S + ++Q+ + E+ L K++LD L+ Q +++GL+ D
Sbjct: 56 QSELEREIALVIPQLNQRGTAIPPPEQ-----LRKQVLDRLILKHLQQQRAKELGLKVDE 110
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
+ + N S D + L GI +++ + + + + V
Sbjct: 111 ATLEEALQGI----AGRNGLSLDELKATLEAGGIRFEDFREDTRSQILSSRLQNQEV--- 163
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
S + ++ + E R+
Sbjct: 164 ------------------------------VRKIQVSEPEVDRFLAREASRLIEREQVRL 193
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
+IL + E ++ E +A+ E +S
Sbjct: 194 QHILIALPENPTPEQVKRAEDKAKG-------------------------LVERLRSGAD 228
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+ +L LG F +P L + +G+ + + G+ I
Sbjct: 229 FAAVAVRESDGRNALEGGDLGWFEMGAVPS--LVSDLAYTLAEGEVSEPLRSPSGFHIIR 286
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
+ IK + + + + +RL + ++ + + S
Sbjct: 287 MREIKAAAPEDVTQTRARHILIRTNE--IVSDADARQRLLQLRERIIGGEDFAGLARAHS 344
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
D G+ +P E+ + + + P G ++ E
Sbjct: 345 DDTGSALKGGELGWVDPGKTVPEFEEQMNAL----AVGATSEPFKSPFGWHILQ--VEER 398
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
+ + + ++ + K E QL E
Sbjct: 399 RQQSANEDILRLKAREALQRRKAEEATEEWLRQLRDEA 436
Score = 41.8 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 15/203 (7%), Positives = 57/203 (28%), Gaps = 4/203 (1%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
+ + L+ + + P G ++ +++E A
Sbjct: 239 GRNALEGGDLGWFEMGAVPSLVSDLAYTLAEGEVSEPLRSPSGFHII-RMREIKAAAPED 297
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
+ + ++ + + + E G++F + + + + +
Sbjct: 298 VTQTRARHILIRTNEIVSDADARQRLLQLRERIIGGEDFAGLARAHSDDTGSALKGGELG 357
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLT 595
+ + + P ++ + + +V + E + K L
Sbjct: 358 WVDPGKTVPEFEEQMNALAVGATSEPFKSPFGWHILQVEERRQQSANEDILRLKAREALQ 417
Query: 596 QMMNKDLLDSVIAYLKSQYSVTV 618
+ ++ + + L+ + V +
Sbjct: 418 RRKAEEATEEWLRQLRDEAYVEI 440
>gi|257789791|ref|YP_003180397.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Eggerthella lenta
DSM 2243]
gi|257473688|gb|ACV54008.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Eggerthella lenta
DSM 2243]
Length = 418
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 13/215 (6%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+T++ K V WGL SD S +V ++ + N +
Sbjct: 2 KKTYIMKTVCAVGLTAACAWGLAGCSSDDNASSGTGGVAGTVNGVEIAEDTITNYIQGVR 61
Query: 65 GMI----SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ G ++ + +++ ++ L + +E+ G+ + + +I
Sbjct: 62 EQLGADDEDSWGTWLSQNDYTPASVREEVFNSYAQRELLKEGVEEKGITVESSEIDEQID 121
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ + D + + + L + G+ E Y + L + F PS+ +
Sbjct: 122 KVKANYDTD-----EKWQAALDQAGMTEDSYRAEIEQKLKENKLYASFASDEDPSDADML 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
Q + Y + + VL +
Sbjct: 177 QYAQMYATAYDGSKRSSHILFNSDDEATAQEVLDK 211
>gi|119474853|ref|ZP_01615206.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma
proteobacterium HTCC2143]
gi|119451056|gb|EAW32289.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma
proteobacterium HTCC2143]
Length = 440
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 44/389 (11%), Positives = 94/389 (24%), Gaps = 55/389 (14%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
+ L D+ + + V V S Q + I Q+ G
Sbjct: 22 LTTLMASLLFCLPTIAAPDSNRGQALDQVIAIVDDDVVLASELQERVAQVVANIQQQ-GK 80
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
V + + ++D L+ Q G+ ++ + R + N+ +
Sbjct: 81 EVPP----LPEIRQSLMDQLILENIQMQLAVRAGVRISDAQLNDSMLRI----AQQNQLT 132
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV------------------------ 169
D F L +G++ + K + V V
Sbjct: 133 LDQFRQALDADGLSYAGTREQIRKEMMLQRVQQGNVNQRVQITDQEITNFLDSDEGAALT 192
Query: 170 --------------GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+++ + + R + + ++ +
Sbjct: 193 APDYRMLHTLIPLPSSASSADITAAKVRAEKLYLRVQEGESYEEVLATTPFETTDLGWRK 252
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
+ V + + + E E + + +
Sbjct: 253 AADLPSLIADLTTTMAKDETAEPVQSPSGFHLVKLADSRGEGELIPQAKVRHILLKSSAI 312
Query: 276 VFPNQKEADEA--FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSI 329
EA Q + G F +LA E + + LG S + +
Sbjct: 313 RDEAATEALAISLRQQIIDGADFGELAREYSEDIGSALEGGDLGWSSPGQLVGE--FQKV 370
Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
A+ D + FG+ I V +
Sbjct: 371 MDQAEINDISAPFTSQFGWHILQVLERRD 399
>gi|15896462|ref|NP_349811.1| peptidylprolyl isomerase [Clostridium acetobutylicum ATCC 824]
gi|15026287|gb|AAK81151.1|AE007817_5 Parvulin-like peptidyl-prolyl isomerase, PRSA B.subtilis ortholog
[Clostridium acetobutylicum ATCC 824]
Length = 353
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/205 (10%), Positives = 67/205 (32%), Gaps = 5/205 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINSWKQELG 65
K+++ + + + + + + S V ++ G Q + K +
Sbjct: 22 KSAKQIATALLVGMFTFSAVGCSMVEKRPEAINSKVVATIYGNQTITRGEIDKLAKGTVE 81
Query: 66 MISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+ + G L ++IL +L+ + +D + + +
Sbjct: 82 QLKSQYGDSYEKNEEAVAALKKQKEQILTSLIDQKIFLKKAKDQKITLTKDEIKTNVDDV 141
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
+ ++ K + F S+L++ G E+ D ++ V ++ S+ +
Sbjct: 142 YAQYQQEFK-TESEFKSQLSQYGYTVAEFKDQLKNRAISNKLIQQVVKDVKVSDDEAKKY 200
Query: 183 KRFYFENRSVDYIVLNNRHVPAIAD 207
+ + + ++ H+ +
Sbjct: 201 YDSHKNSYTQSPNTVHLAHILVKTE 225
Score = 38.3 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 29/281 (10%), Positives = 74/281 (26%), Gaps = 20/281 (7%)
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ ++ K+ I + K K +D K + T++D++ +
Sbjct: 86 QYGDSYEKNEEAVAALKKQKEQILTSLIDQKIFLKKAKDQKITLTKDEIKTNVDDVYAQY 145
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ + + Y
Sbjct: 146 QQEFKTESEFKSQLSQYGYTVAEFKDQLKNRAISNKLIQQVVKDVKVSDDEAKKYY---- 201
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+ + V KT K A+ V ++ ++ G++F + K +
Sbjct: 202 DSHKNSYTQSPNTVH-LAHILVKTEKEAKAVKARIDK--------GEDFATVAKQVSTDG 252
Query: 529 LTTNQ--INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
+ + + + ++ V P+ + V K PV++
Sbjct: 253 SKEKGGDLGDIQENDSNYDKTFMAAALKLNDNQV-SAPVHTQFGWHVIKCIKKTEYPVKD 311
Query: 587 ----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
KD + K + + +SQ ++ ++ +
Sbjct: 312 FNSVKDDIKQTVLSTKQKSVYQKTLKKWESQANIDKNEKNL 352
>gi|218261354|ref|ZP_03476208.1| hypothetical protein PRABACTJOHN_01874 [Parabacteroides johnsonii
DSM 18315]
gi|218224075|gb|EEC96725.1| hypothetical protein PRABACTJOHN_01874 [Parabacteroides johnsonii
DSM 18315]
Length = 470
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/342 (13%), Positives = 102/342 (29%), Gaps = 25/342 (7%)
Query: 287 FQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEY---IPDVSLADSIFSLAKKGDFTP 340
LKKG F LA+E LG F++ + ++FS
Sbjct: 142 LNVLKKGGDFAALAKEYSADQAAEKGGELGWFTEATALRGVNDDFKKAVFSTPVNDYS-- 199
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ +G I V++ + +V TK + + +
Sbjct: 200 IVKSLYGTHIIKVTDKTANVDKY--KVADIDMTVSPSTKTYGNIYNELNQFISKNQNMDK 257
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+D+ ++ + V + + +I ++ F + D
Sbjct: 258 LDDAAKEAGYNLLSNVTVTA-----NDQLLGSIKNSRPVIRWAFQNS--KGDISEIFECD 310
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
++ I+ ++P R LE V +K + K E++ + K +
Sbjct: 311 DKFVIAAIQGTLPEGYRSLESVTPMLKSELIAQKKGEKIVQDLSA------KNLSSVDAY 364
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDG-ISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+ + +S + ++ G + ++ + S + P+ VFKV
Sbjct: 365 AQAMNSSADSVKFVSFATRRIAGIGVEPKLNAMVSLAQKDQLSAPVAGNNGVYVFKVYEQ 424
Query: 580 KVGPVQ-EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
++ I L I L ++ V +
Sbjct: 425 NKDAKNYDEAAEIKTLDASNAYRFGFQAIQSLVNKADVEDNR 466
>gi|86160749|ref|YP_467534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85777260|gb|ABC84097.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 317
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 47/154 (30%), Gaps = 17/154 (11%)
Query: 20 VLFVPFLIWGLSDALFSVSGSST----VVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+L L G + SG V V + +P + + +
Sbjct: 8 ILIATALAAGCGRCGGARSGERPAPGAVAVVNGEPIPPDALARELRDAQAGAEGQ----- 62
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
A L +++LD+LV A L Q + +V F ++
Sbjct: 63 --APAAGDVLRRRVLDDLVDRALLLQQARARSIVVGQDQVER------AFLRLRAEYPGT 114
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
F LA+E +++ E L+ + V
Sbjct: 115 HFDDLLAQERLSQAELKARLKDQLTVERLFEQEV 148
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/209 (9%), Positives = 57/209 (27%), Gaps = 6/209 (2%)
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM-WVQIKESIPARDRKLEE 481
+ ++ L + K + L + VQ+ ++ R
Sbjct: 108 RAEYPGTHFDDLLAQERLSQAELKARLKDQLTVERLFEQEVFPQVQVVDAEVERYYAEHG 167
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
+ ++ +A Q+ + + + F ++ + + +
Sbjct: 168 AEFQEPERVHVLQIVVASREEAAQVREKLRRNPQTFAEVARRSSIAPEGKGGGDLGFIGR 227
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQM 597
+ F+ PV V + + +FKV K Q + + L +
Sbjct: 228 GSGFPEVFDTCFALPVN-VISDVTPSPYGFHLFKVVEKKPAQRRTLEQARAEIAEKLGRE 286
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ L+ + + + + +
Sbjct: 287 KRAGAQAEYLEALRKRAQIEIDEKALAAV 315
>gi|317489254|ref|ZP_07947771.1| ppic-type ppiase domain-containing protein [Eggerthella sp.
1_3_56FAA]
gi|325832301|ref|ZP_08165300.1| PPIC-type PPIASE domain protein [Eggerthella sp. HGA1]
gi|316911655|gb|EFV33247.1| ppic-type ppiase domain-containing protein [Eggerthella sp.
1_3_56FAA]
gi|325486137|gb|EGC88591.1| PPIC-type PPIASE domain protein [Eggerthella sp. HGA1]
Length = 418
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 13/215 (6%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+T++ K V WGL SD S +V ++ + N +
Sbjct: 2 KKTYIMKTVCAVGLTAACAWGLAGCSSDDNASSGTGGVAGTVNGVEIAEDTITNYIQGVR 61
Query: 65 GMI----SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ G ++ + +++ ++ L + +E+ G+ + + +I
Sbjct: 62 EQLGADDEDSWGTWLSQNDYTPASVREEVFNSYAQRELLKEGVEEKGITVESSEIDEQID 121
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ + D + + + L + G+ E Y + L + F PS+ +
Sbjct: 122 KVKANYDTD-----EKWQAALDQAGMTEDSYRAEIEQKLKENKLYASFASDEDPSDADML 176
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
Q + Y + + VL +
Sbjct: 177 QYAQMYATAYDGSKRSSHILFNSDDEATAQEVLDK 211
>gi|148547507|ref|YP_001267609.1| SurA domain-containing protein [Pseudomonas putida F1]
gi|148511565|gb|ABQ78425.1| SurA N-terminal domain [Pseudomonas putida F1]
Length = 213
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/152 (11%), Positives = 37/152 (24%), Gaps = 2/152 (1%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V ++ + + L + + + N + L + LD L+ L Q
Sbjct: 21 PAARVNGVEIGLMRLERYFSEYLDAQGRAVTSIRNPGLYKR--LRDQALDELIDKELLWQ 78
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G+ V +I G F + + R E + + +
Sbjct: 79 EAQRQGIAVSDEHVSAQIGEIEAAFGSPALFERRLAEAGFDRAQYTEYTRHEMAAQQVYA 138
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+R D
Sbjct: 139 LLSAVDAPSQGEVEAFYDANQQRLQGAQNQSD 170
>gi|262198047|ref|YP_003269256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
DSM 14365]
gi|262081394|gb|ACY17363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
DSM 14365]
Length = 349
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 46/173 (26%), Gaps = 6/173 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + S ++ R L + LD ++S +
Sbjct: 53 DRVAAVVNDSVILTSELDARLAPLTAGLANINDER--ERARRGEQLRSQQLDEMISEELV 110
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q L D V +A + N + LA++G + + Y + L
Sbjct: 111 VQEARKSKLNVDDKEVSAALAEIK----QQNGLDDTQLAAALAQQGYSMQAYRKEVERQL 166
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ M V + + RS + +H P+ +
Sbjct: 167 LHRRAINMLVRPRVTVTDEDVRVRYDTMSRRSAAVSKVRLKHALLSLPPNPSN 219
Score = 46.4 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 11/133 (8%)
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN---QINRMDNENKFFGYDG 548
+ + E SKA +V E + G +F D + + T + + ++ + ++
Sbjct: 218 SNELLAEAKSKAAAIV-EAVRGGASFDDQARQYSDDINTRDSGGDLGWIERGSIATEWEV 276
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD---- 604
I VFS V+ P+ VF V ++E D L + ++ +D
Sbjct: 277 I--VFSMEEGEVRG-PVSGPGGLHVFYVEELAKSDLEEFDAVKEQLQSEIYREEMDKEIT 333
Query: 605 SVIAYLKSQYSVT 617
+ + L+ + +
Sbjct: 334 AWLQELRDKAFID 346
>gi|169335547|ref|ZP_02862740.1| hypothetical protein ANASTE_01962 [Anaerofustis stercorihominis DSM
17244]
gi|169258285|gb|EDS72251.1| hypothetical protein ANASTE_01962 [Anaerofustis stercorihominis DSM
17244]
Length = 504
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 56/514 (10%), Positives = 145/514 (28%), Gaps = 35/514 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVS-GSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ KI + + V L ++ + V VG ++P + L
Sbjct: 4 IKKIIGIAMAVTLLFSAFGCSVNEEKLANKAVAKVGDTEIPKMNLDAVVGFTLVSYYANS 63
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
G ++ E + L +++ +NLV + + +D G + V + +
Sbjct: 64 GTEISMEDSSVSSLKEEVANNLVEYELVKKAAKDYGYTKNDKEVKEAAKETLKSIKSSSY 123
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
D + S L + G +++ ++ + + ++F + +
Sbjct: 124 LKGDKYKSVLKQYGFEDEKSFENAVNLYAEFSTYTSGFA------------EKFRNKVQG 171
Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
Y N V I ++ + +K + K+ S ++K E
Sbjct: 172 GKYATANYMTVDDIKVTASIYYYCYIQKAMEQEYNEYQKQYSGSADSSESEQKTDEQKQQ 231
Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
EL+ + + + + KEA + K K + SD
Sbjct: 232 ELKE---------STVAMVKEKAAFYAAGKEAKTKIDTKKVNSKKAENESLSSMFGSDTL 282
Query: 312 LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
++ + ++ +A + + Y + + F + + K
Sbjct: 283 TSVYNAYGLTKKQYDEAGKWIATADLYKEALEEKVTYDKPTEKDAEKEFNKNTKAYDKST 342
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
+ I + + + ++ ++ + +
Sbjct: 343 VSAKHILTSDKSLAKEIYEQATQKGADFDQIMSKYQKNSAVQEASDLGAFT--------- 393
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
P + + + S V G ++ ++ + K E+ +
Sbjct: 394 -YPSMVEDFSKAAFDAEKGSVVGPVKTEYGYHVIYVYDKNT--VEPKFEDSKDTILSKLD 450
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ E +K ++ + + DI +
Sbjct: 451 SQNKLE-AVNKLDEDIKDKHNGKVEIEDIDEPYN 483
Score = 41.4 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 29/285 (10%), Positives = 67/285 (23%), Gaps = 28/285 (9%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
+ ++ + + E K F A G +K+ S +
Sbjct: 221 SEQKTDEQKQQELKESTVAMVKEKAAFYAAGKEAKTKIDTKKVNSKKAENESLSSMFGSD 280
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
+ + ++ + A + K
Sbjct: 281 TLTSVYNAYGLTKKQYDEAGKWIATADLYKEALEEKVTYDKPTEKDAEKEFNKNTKAYDK 340
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
S A ++ + +++G +F I + + D
Sbjct: 341 STVSAKHILTSDKSLAKEIYEQATQKGADFDQIMSKYQKNSAVQEASDLGAFTYPSMVED 400
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMN----- 599
F V P++ Y V V + + KD +S L
Sbjct: 401 FSKAAFDAEKGSV-VGPVKTEYGYHVIYVYDKNTVEPKFEDSKDTILSKLDSQNKLEAVN 459
Query: 600 -------------------KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ + ++A LK V ++ +++ +
Sbjct: 460 KLDEDIKDKHNGKVEIEDIDEPYNMLLAELKKDNKVKIYKSVLNK 504
>gi|254294289|ref|YP_003060312.1| SurA domain protein [Hirschia baltica ATCC 49814]
gi|254042820|gb|ACT59615.1| SurA domain protein [Hirschia baltica ATCC 49814]
Length = 426
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/189 (13%), Positives = 49/189 (25%), Gaps = 10/189 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
TV V Q + +S + L + G N+E R ++ L+
Sbjct: 43 EGTVAIVNDQPISYSDVRQRAQFILVSL----GVQPNAETIRQAQTR--AIEGLIDEKLQ 96
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E L + + IA + F+ LA+ G++ + D +
Sbjct: 97 LQEAETYELVVEEAEIDDSIANIAARSNAT----PEDFLQGLAQVGLSPRTLRDQIRADI 152
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ +VG G + L + + +
Sbjct: 153 AWRRLVGGRFGSRVRISSLQIDDNLERLNKSMEEPQYRIAEIFLPGITQEEISVVYQGAE 212
Query: 220 YKDNYRAPE 228
+
Sbjct: 213 ELKRQIENQ 221
>gi|94499974|ref|ZP_01306509.1| Parvulin-like peptidyl-prolyl isomerase [Oceanobacter sp. RED65]
gi|94427832|gb|EAT12807.1| Parvulin-like peptidyl-prolyl isomerase [Oceanobacter sp. RED65]
Length = 436
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/369 (11%), Positives = 91/369 (24%), Gaps = 63/369 (17%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V + S Q G + + L ++L+ L+
Sbjct: 40 DSIAAVVDDGIIMESELEQRIDTIK---RQSQGMRLPPDDI----LQDQVLERLIIENLQ 92
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ ++ I K N + F L ++G++ + + +
Sbjct: 93 LQMAERSGMRISDEQLNQTIINI----AKQNGLTLREFKKALEKDGVSYAQAREQIRRER 148
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
++V VG + +S H+ + +
Sbjct: 149 IISEVQRYRVGSKINISEQDVDNFLNSVRGKSATAEEYRLGHILIQVPSQASRAQLKRAQ 208
Query: 220 YKDNYRAPEYKRISYILFDVHEK------------------------------------- 242
K + + + +
Sbjct: 209 NKAEDIVKKLRNGADFQQMAISQSEGRNALKGGDLGWRKEAELPTLFADIVPDLKKGQVS 268
Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------FQSLKKG 293
S + +K ++ + + ++ LK G
Sbjct: 269 NPIRSASGYHIIKISDKRGGDTQMVRQTKARHILIQENEIRNSQQAKKLINDLYKKLKNG 328
Query: 294 KKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
F +LA+E S LG ++ + + + KKG + FG+
Sbjct: 329 ADFDELAKEYSDDPGSKLSGGDLGWVNQGDMVPA--FEQTMNATKKGQISEPFKSRFGWH 386
Query: 350 IAHVSNIKP 358
+ V++ +
Sbjct: 387 VLQVTDYRQ 395
>gi|289522411|ref|ZP_06439265.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289504247|gb|EFD25411.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 388
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/259 (10%), Positives = 83/259 (32%), Gaps = 15/259 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFI 57
L+ +R ++ + + + + F +G+ D+ + V + S
Sbjct: 3 LKALRTRTKVIMIAVAVAFVISIFAGYGIYSRRGDSSATTEKDKVVAKANGTNIMLSQID 62
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+Q + + + N +++ L K +LD +V LD+ +++ +E +
Sbjct: 63 MGVRQLMDQM-----GISNLPQSQYYILRKHVLDQIVLDMELDKEVKENKIEVTDDEINV 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG-MRPSN 176
+ R + + + L+ I E++ + L++ ++ V +
Sbjct: 118 AMDRIISQFP-----TKEAYQDYLSAYNIKEEDLKKELRRQLAQQKLLQTAVKTDDTVTE 172
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ + ++ V L + + + + +
Sbjct: 173 EEMQEFYEARGDDYFVRPEGLWVNFAIFSDEKTAQGVRDALASGQTWDDVMSQYGDKALH 232
Query: 237 FDVHEKEKKIEISNDELQA 255
++K + ++ E Q
Sbjct: 233 STSYDKPLLLPMTTLEAQE 251
>gi|121956435|sp|Q88QT4|SURA_PSEPK RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
Length = 427
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S + I+++ G V + L++++L+ L+
Sbjct: 19 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPP-----TSALEQQVLERLIVENLQ 73
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S D F + LAR+G++ + + + +
Sbjct: 74 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALARDGLSFDDAREQVKREM 129
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 130 IISRVRQRRVA 140
Score = 51.0 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/216 (8%), Positives = 63/216 (29%), Gaps = 5/216 (2%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ ++ + +P+G + ++ +
Sbjct: 211 ANSASENALEGGEMGWRKAGQLPPDFAKMLSSMPVGEITQPIRIPNGFIILKLEEKRGGS 270
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ +EV + +E + + + + + K G++F ++ K+ +
Sbjct: 271 ENVLRDEVHVRHILIKPSEIRSEAATEQLAERLYDRIKNGEDFGELAKSFSEDPGSALNG 330
Query: 535 NRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
++ + + Q+ + V P + + V +V + E+ +
Sbjct: 331 GDLNWVDPNSLVPEFREQMANAQQG-VVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQA 389
Query: 594 L---TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L + L + + ++ + V + +
Sbjct: 390 LSVLRNRKYDEELQTWLRQIRDEAYVEIKLPGADQA 425
>gi|168187039|ref|ZP_02621674.1| foldase protein PrsA [Clostridium botulinum C str. Eklund]
gi|169295091|gb|EDS77224.1| foldase protein PrsA [Clostridium botulinum C str. Eklund]
Length = 348
Score = 64.9 bits (155), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/206 (11%), Positives = 61/206 (29%), Gaps = 6/206 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW--KQEL 64
K R VA + + V V + + + + V VG +K+ +++ K+
Sbjct: 2 KNIRKLVAAVAMCVFSVSAVGCSMIEKTPEAINKTVVAKVGDKKITKGELDSNFGVKRYA 61
Query: 65 GMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEI-A 120
+ G L + ++ + + L Q E + L + E
Sbjct: 62 EQFKAQYGDNYAENPQVKEQLKQVKLAVVQQMAAQEALKQEAEKLKLVPKEDELKKEADK 121
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ + N + F + G ++ + + + + ++ +
Sbjct: 122 KIQEIKKEQNIKTDQDFDKMVKASGFTKEGFENLVKDNVILEKLQNELTKNVKVDEKEMQ 181
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIA 206
+ + + D H+ I
Sbjct: 182 KYYETHKDKYPKDPKNPTKVHLAHII 207
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 35/287 (12%), Positives = 82/287 (28%), Gaps = 10/287 (3%)
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK--RLEEFLALGTSMD 402
F P ++VK + QM +A ++ E K E+ L
Sbjct: 63 QFKAQYGDNYAENPQVKEQLKQVKLAVVQQMAAQEALKQEAEKLKLVPKEDELKKEADKK 122
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+++ D K + + + +++
Sbjct: 123 IQEIKKEQNIKTDQDFDKMVKASGFTKEGFENLVKDNVILEKLQNELTKNVKVDEKEMQK 182
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
Y + + L + K+ + +V S+ + E +K G +F + K
Sbjct: 183 YYETHKDKYPKDPKNPTKVHLAHIILQPKSQEDVSKVESEIKSIKEELNK-GADFSILAK 241
Query: 523 NLGASLLTTNQ--INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
+ + N F + + P++ Y + K+
Sbjct: 242 KYSQDGSKDKGGDLGTVPVVNSGFDEQFMDSALPLKDGQI-SDPVKTQFGYHIIKMIKKD 300
Query: 581 VGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
V P + K++ +L Q + + ++ + V+++ I
Sbjct: 301 VKPCKTFAEVKNEINKFLLQDKKDKAIKNKFKQIQDNAKIKVYEDKI 347
>gi|253701697|ref|YP_003022886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
gi|251776547|gb|ACT19128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
Length = 341
Score = 64.9 bits (155), Expect = 5e-08, Method: Composition-based stats.
Identities = 56/386 (14%), Positives = 116/386 (30%), Gaps = 95/386 (24%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSG-----------------SSTVVSVGRQKVPFSSFI 57
K LV+ V ++ G + A + + V V +++ +
Sbjct: 9 KSLLVLCAVTMMLSGCAGARPTATAPPAPATPPAAQAAPAAAGEVVARVNGKEIHRNELE 68
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
S I + + L+K+ LD LV + Q +GL+
Sbjct: 69 RS-----KKILMAGQPGIPPYLLKE--LEKQALDQLVGAELMYQAG--LGLQIKD---LD 116
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+A + L K V+ LA G+ E+ ++ + L ++V +
Sbjct: 117 RMADAKLVQIKSGFKDQQVYEKELANIGMTEQMLREYSRRDLVIANLVNTKLA------- 169
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
A ++ + +++ + + E R S+IL
Sbjct: 170 --------------------------ADLQVTDLEIEKFYADNPERFEQKEQVRASHILI 203
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
K E + +A+ + +K+G F
Sbjct: 204 GCDSKGTAEEK----------------------------KKARDKAERLLKEVKEGADFA 235
Query: 298 QLAEEQGKSL---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
+LA E + LG F + + + K G+ + V+ FG+ + +
Sbjct: 236 KLARENSTCPSATNGGDLGYFPRGKMVPP--FEEAAFALKSGEVSDVVETGFGFHLVKQT 293
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKA 380
+ + VS ++ I ++ K
Sbjct: 294 DRIKAEKVSLATAREKIVAYLKSQKT 319
>gi|170763930|ref|ZP_02635346.2| putative foldase protein PrsA [Clostridium perfringens B str. ATCC
3626]
gi|170764086|ref|ZP_02631748.2| putative foldase protein PrsA [Clostridium perfringens E str.
JGS1987]
gi|170662690|gb|EDT15373.1| putative foldase protein PrsA [Clostridium perfringens E str.
JGS1987]
gi|170712067|gb|EDT24249.1| putative foldase protein PrsA [Clostridium perfringens B str. ATCC
3626]
Length = 326
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/158 (12%), Positives = 50/158 (31%), Gaps = 6/158 (3%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNLVS 95
+TV +V +K+ + K + + G + + + ++ ++ LV+
Sbjct: 18 DKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVAQQILQQRQSVVQGLVT 77
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
L + +G++ + ++ K D F L EG E + D
Sbjct: 78 DKVLGIEADKLGIKPSEEEIKKKVDEQ---FENIKKGMGDNFDKALEAEGYTEDTFKDVI 134
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ V + ++ ++ + +
Sbjct: 135 KNQVINQAVQDYIIKDVKVTDEDAQKYYDENKQQFVAK 172
>gi|118581987|ref|YP_903237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
propionicus DSM 2379]
gi|118504697|gb|ABL01180.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
propionicus DSM 2379]
Length = 300
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/170 (9%), Positives = 53/170 (31%), Gaps = 6/170 (3%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
QI ++ + + + + +A +++ + K G F ++ +
Sbjct: 126 AQISDADLKKFYDQNIDKFKAGEQIRASHILVKTEKEAKEILAQL-KGGAAFEELARKHS 184
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---- 581
+ + + V +++ + + K+T +
Sbjct: 185 VDSSSAKGGDLGWFGKGAMVPAFERAALALKEGQV-SDVVKSDFGFHIIKLTGKRPAGTR 243
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ KD+ + L +++ + LK +TV ++ + + +
Sbjct: 244 PFDEVKDQIKAALMPSKQQEIFQKIKDELKKSAKITVKEDALNAMSEPAQ 293
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 38/138 (27%), Gaps = 20/138 (14%)
Query: 18 LVVLFVPFLIWGL----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
+ V ++ + + + V +K+ F K +
Sbjct: 10 IAVALCSVALFACQGTPGSSTATKQEGQVLAEVNGKKITSGDFSREVKNLPEYLRAM--- 66
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP------LFHG 127
A + K++LD +V + Q GL+ + ++ F
Sbjct: 67 ------ATTPQGRKEMLDTMVIRELILQKASKDGLDKGP-EIEEKLQELKKRLIVEAFLK 119
Query: 128 KDNKFSHDVFVSRLAREG 145
K + + + L +
Sbjct: 120 KKVETDAQISDADLKKFY 137
>gi|289811836|ref|ZP_06542465.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 91
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ +R A+ + V KI V++ V F++ G+S L S + V Q++ + F N++
Sbjct: 1 MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSN-NYAAKVNGQEISRAQFENAF 59
Query: 61 KQELGMISQKIGFVVNS---ERARSVGLDKKI 89
E + Q++G + L +++
Sbjct: 60 NNERNRMQQQLGDRYSELAANEGYMKSLRQQV 91
>gi|254446719|ref|ZP_05060194.1| hypothetical protein VDG1235_67 [Verrucomicrobiae bacterium DG1235]
gi|198256144|gb|EDY80453.1| hypothetical protein VDG1235_67 [Verrucomicrobiae bacterium DG1235]
Length = 546
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 60/553 (10%), Positives = 151/553 (27%), Gaps = 59/553 (10%)
Query: 1 MLEIIRKASRT--WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
M+ I+ + + I VL V F++ + T F
Sbjct: 1 MISWIQNKLQKHLLLVIIIFGVLIVAFVMQIGNMGPLGGGRERTA--------DLKFFDT 52
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNL-VSGATLDQFIEDIGL-EADHGRVW 116
E + +++ R+ + +L AT+ + E +
Sbjct: 53 PLNTEAARARFQTDAQLSASLNRN----NRASGSLHFERATVLHIANQHSIPEPTKDELR 108
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGI----NEKEYIDHYTKMLSRTDVVGMFVGGM 172
I P F + +F + L + E + V + G
Sbjct: 109 QYIETLPAFQNQLGQFDAQAYNMALDSLRLGGGVTESDLHRVLVDDYRIAKVYSVLRGAG 168
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
+ + ++ S+ ++ + + +L + +E + Y+ PE + +
Sbjct: 169 FVNESEILESLGQRLATWSILLAEVDLGAYAPEIEITEEMLQKHYEDFSFTYQTPERRVV 228
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
YI + + ++++ + D+L +E N ++Y E ++ L
Sbjct: 229 DYIEINASDFIEQVKPTEDQLITYFESNLDRYQPEPAEPAEGEEAEPEEPITFEEARLAV 288
Query: 293 GKKFIQLAEEQGKSLSDISL---------------------------------GSFSKEY 319
+ A + S L
Sbjct: 289 RNDYRITAAREIASERAHDLVVSIIENDFQHDSEGLATILAELELKTSSPFAANQTPIGT 348
Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
+ + + F L+ + ++ + ++ +N+ SF ++ I + +R +
Sbjct: 349 VWGRDVVEQAFELSTERFYSEPLQVENRSIVLFYNNVIAPIVPSFDTLRDKIISDVRAEE 408
Query: 380 ASEKVKEDYKRLEEFLALGTSMD-EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
+ E L+ L + + + + + + +
Sbjct: 409 YRKVRAEYAVELKAKLEANADSEISFGAAAEEAGLSVTPFNEFTLVEPAE-----GLDRR 463
Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
L + D D + ++ + K + V++ K++
Sbjct: 464 ALSSMLELDSKEVSDFIRLNGENQGAYLYVVSKDVPEVSKDDPQYAQVEQSLKSLYGQFS 523
Query: 499 VSSKANQLVLEYS 511
L+LE
Sbjct: 524 AEQYIKTLMLEEQ 536
Score = 55.2 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/251 (11%), Positives = 69/251 (27%), Gaps = 16/251 (6%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
+ D ASE+ + + E S + ++
Sbjct: 289 RNDYRITAAREIASERAHDLVVSIIENDFQHDSEGLATILAELELKTSSPF------AAN 342
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
+ + ++ + F + + + S + I + + +
Sbjct: 343 QTPIGTVWGRDVVEQAFELSTERFYSEPLQVENRSIVLFY-NNVIAPIVPSFDTLRDKII 401
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKN---FRDIGKNLGASLLTTNQINRMDNENKFF 544
D + + + + A +L + + F + G S+ N+ ++ +
Sbjct: 402 SDVRAEEYRKVRAEYAVELKAKLEANADSEISFGAAAEEAGLSVTPFNEFTLVEP-AEGL 460
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLS-----YVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
+S + + V F NG + YVV K + + L +
Sbjct: 461 DRRALSSMLELDSKEVSDFIRLNGENQGAYLYVVSKDVPEVSKDDPQYAQVEQSLKSLYG 520
Query: 600 KDLLDSVIAYL 610
+ + I L
Sbjct: 521 QFSAEQYIKTL 531
>gi|312796410|ref|YP_004029332.1| peptidyl-prolyl cis-trans isomerase [Burkholderia rhizoxinica HKI
454]
gi|312168185|emb|CBW75188.1| Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) [Burkholderia
rhizoxinica HKI 454]
Length = 260
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 56/182 (30%), Gaps = 11/182 (6%)
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV------ 499
+ P K + I + + +E+ ++ K E+
Sbjct: 80 ANRPDVKAQIALADQSVVIRALIDDFLKNNKPSDDEIKARYEQLIKQAGGGNELHLHHIL 139
Query: 500 ---SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSG 555
+A +L+ + K G +F D+ K + +D + + +
Sbjct: 140 VPDEQQAKELIAKI-KAGASFEDLAKQHSKDPGSAKNGGDLDWANPQSYVPEFADAAGKL 198
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
V P+ + + ++ +S+ D+ + + Q + ++ L A L
Sbjct: 199 KKGEVTSTPVHTQFGWHIIRLDDSRAIQPPPLDQVKAQVAQQLTQEKLQQFNAELHKNAK 258
Query: 616 VT 617
+
Sbjct: 259 IQ 260
>gi|158521718|ref|YP_001529588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
oleovorans Hxd3]
gi|158510544|gb|ABW67511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfococcus
oleovorans Hxd3]
Length = 316
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/192 (11%), Positives = 59/192 (30%), Gaps = 5/192 (2%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V ++ + S + I ++ + ++++D+L+ +
Sbjct: 20 DRIVAFVNQEIILLSELEKAMALYETAIRERQLPADTEKEML-YRARQEMIDHLIDRRLI 78
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q +++G+ D V + R + F+ + LA +G + Y + + +
Sbjct: 79 QQRADELGVTVDDREVDDAMERMK----RSMLFTDEDLRQSLAEKGYTLEGYRNELREQI 134
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
R V+ + V + QA + R++ D ++
Sbjct: 135 LRQRVLTLEVKSKVVVTPVDIQAYYETHPEEYSAGRQYHLRNIIMRVDKDMPDESKKTIS 194
Query: 220 YKDNYRAPEYKR 231
+
Sbjct: 195 EMMQKIHDRLQA 206
Score = 43.7 bits (100), Expect = 0.084, Method: Composition-based stats.
Identities = 28/265 (10%), Positives = 84/265 (31%), Gaps = 9/265 (3%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ ++++ + + + ++ ++ + + +M+ + R DL
Sbjct: 55 DTEKEMLYRARQEMIDHLIDRRLIQQRADELGVTVDDREVDDAMERMKRSMLFTDEDLRQ 114
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ +EQ+L + + SK + +Y +E R
Sbjct: 115 SLAEKGYTLEGYRNEL--REQILRQRVLTLEVKSKVVVTPVDIQAYYETHPEEYSAGRQY 172
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
L ++ V KD +++ S+ Q + + + G++F + S +
Sbjct: 173 HLRNIIMRVDKDMPDE--SKKTISEMMQKIHDRLQAGESFETLASQYSQSSFAEKGGDLG 230
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISY 593
+ + ++ L Y + + + P + D+
Sbjct: 231 FFALEDLAPQLREAIEELQAGEF-TPVLDTPLGYQILYLEEIQEKPAVSLEKATDEIREK 289
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618
L + + ++ + + L+ + + V
Sbjct: 290 LYEDLLEERFEKWVTELREKSHIKV 314
>gi|124265396|ref|YP_001019400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylibium
petroleiphilum PM1]
gi|124258171|gb|ABM93165.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylibium
petroleiphilum PM1]
Length = 437
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 9/149 (6%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
F+ ++ S V V R+ V + L + + G + +
Sbjct: 22 FVANAVAQPSPVRSADYIVAIVDRELVTNAEVQQRLA-ALRREAAQSGQALPPDD----E 76
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
L +++LD L+ + G+ D + + N+ + RL R+
Sbjct: 77 LRRRMLDTLIDERAQLSAARESGVRIDEAELDRTVGNVAA----QNRITLAQLRERLQRD 132
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
GI + + L V V
Sbjct: 133 GIEFSRFRSNLRDQLLLERVREREVQSRI 161
>gi|169343240|ref|ZP_02864251.1| putative foldase protein PrsA [Clostridium perfringens C str.
JGS1495]
gi|169298538|gb|EDS80619.1| putative foldase protein PrsA [Clostridium perfringens C str.
JGS1495]
Length = 326
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/158 (12%), Positives = 50/158 (31%), Gaps = 6/158 (3%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNLVS 95
+TV +V +K+ + K + + G + + + ++ ++ LV+
Sbjct: 18 DKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVAQQILQQRQSVVQGLVT 77
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
L + +G++ + ++ K D F L EG E + D
Sbjct: 78 DKVLGIEADKLGIKPSEEEIKKKVDEQ---FENIKKGMGDNFDKALEAEGYTEDTFKDVI 134
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ V + ++ ++ + +
Sbjct: 135 KNQVINQAVQDYIIKDVKVTDEDAQKYYDENKQQFVAK 172
>gi|104781925|ref|YP_608423.1| hypothetical protein PSEEN2850 [Pseudomonas entomophila L48]
gi|95110912|emb|CAK15628.1| conserved hypothetical protein; putative signal peptide
[Pseudomonas entomophila L48]
Length = 213
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 7/124 (5%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V ++ + + L + + + N + L ++ LD L+ L Q
Sbjct: 21 PVARVNGVEIGALRLERYFTEYLQAQGRAVASIRNPNLYQR--LREQALDELIDKELLWQ 78
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
G+ D +V +A G S VF RL G + + D+ ++
Sbjct: 79 EARRQGIAIDDEQVRARVAEVEAAFG-----SPAVFARRLEDAGFDHDSFADYTRHEMAA 133
Query: 162 TDVV 165
+
Sbjct: 134 QEAF 137
>gi|26990197|ref|NP_745622.1| hypothetical protein PP_3485 [Pseudomonas putida KT2440]
gi|24985139|gb|AAN69086.1|AE016542_1 hypothetical protein PP_3485 [Pseudomonas putida KT2440]
Length = 213
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 7/124 (5%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V ++ + + L + + + N + L + LD L+ L Q
Sbjct: 21 PAARVNGVEIGLMRLERYFSEYLDAQGRAVTSIRNPGLYKR--LRDQALDELIDKELLWQ 78
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G+ +V ++ G S +F RLA G + +Y ++ ++
Sbjct: 79 EAQRQGIAVSDEQVSAQVGEIEAAFG-----SPALFERRLAEAGFDRAQYTEYTRHEMAA 133
Query: 162 TDVV 165
V
Sbjct: 134 QQVY 137
>gi|304320041|ref|YP_003853684.1| peptidyl-prolyl cis-trans isomerase family protein [Parvularcula
bermudensis HTCC2503]
gi|303298944|gb|ADM08543.1| peptidyl-prolyl cis-trans isomerase family protein [Parvularcula
bermudensis HTCC2503]
Length = 421
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 6/107 (5%)
Query: 18 LVVLFVPFLIWGLSDALFSVS-GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L +L+V ++ GL+ L + G V + + + + N
Sbjct: 4 LAILWVTLILTGLTAPLANAQVGERVAAVVNDDPISTFDVRQRIQLII-----VTEGMRN 58
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ L + L L+ Q E L + E+ +
Sbjct: 59 LPQEALAQLQGRALRELIEERLKLQEAERFELTIPDEAIDAELEQLA 105
>gi|90416848|ref|ZP_01224777.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma
proteobacterium HTCC2207]
gi|90331195|gb|EAS46439.1| peptidyl-prolyl cis-trans isomerase SurA [marine gamma
proteobacterium HTCC2207]
Length = 434
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 9/151 (5%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+L V + ++ + V V V S I Q+ G +
Sbjct: 10 ALLAVLLGAFSVTASAQIEILDKVVAIVDEDVVLESEVQRRLATIYAQI-QQSGTQPPPQ 68
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
+ +++L+ L+S G+ + +AR K N+ + + +
Sbjct: 69 EI----IVQQVLERLISERLQLNMGYSAGIRITDAELNDAMARI----AKSNQLTMEQYA 120
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
++ G + + V V
Sbjct: 121 EQIHATGSTLSNVREEIRNEMILMRVQQGQV 151
Score = 39.1 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 23/211 (10%), Positives = 64/211 (30%), Gaps = 5/211 (2%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ G + +F + + + D Y +++ E
Sbjct: 222 IANSADQTALQGGDLGWRKMAQLPGVFIEAVEKLEIDQVSEPIRSDAGYHLIKLYERKGG 281
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
++ +E+ E + E K G++F + K +
Sbjct: 282 GEQLIEQHFARHILIKPNQIRDEATVVSQLTELRERIKAGEDFALLTKEFSEDPGSALNG 341
Query: 535 NRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKF 590
+ + F + + S + V P + + + +VT + E +++
Sbjct: 342 GELGWSTPGMFVPEFEQTMGSIELNEV-SAPFLSQFGWHILQVTERRNQDFSENITRNRA 400
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ L Q ++ L + ++ + V + ++
Sbjct: 401 QNLLRQRKYEEELQVWLQEIRDEAFVEIKES 431
>gi|163804119|ref|ZP_02197900.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. AND4]
gi|159172068|gb|EDP57026.1| peptidyl-prolyl cis-trans isomerse D [Vibrio sp. AND4]
Length = 193
Score = 64.5 bits (154), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/179 (12%), Positives = 56/179 (31%), Gaps = 16/179 (8%)
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
+ + + + V+++++ L EV V VK + V
Sbjct: 20 PEVKEDGLNSEAIEIAPEHIIVVRVEDARDETVLPLVEVRDQVVAKLSHVKGEQGVIELG 79
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM---- 559
++V + + DI ++R S VF+
Sbjct: 80 TKVVAALKEGNQ---DILAENNLVFGEQESVDRRSP--------LASSVFAMAKPEGDKP 128
Query: 560 VKCFPIENGLSYVVFKVTNS-KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V + + V+ ++ + +++ + + ++ L SVIA L++ +
Sbjct: 129 VYGQSKDQAGNVVIVELDAVHEELDSALEEQVSMQMQRASSQQDLSSVIAVLRANTDIK 187
>gi|126664692|ref|ZP_01735676.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
gi|126631018|gb|EBA01632.1| Parvulin-like peptidyl-prolyl isomerase [Marinobacter sp. ELB17]
Length = 481
Score = 64.5 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 53/173 (30%), Gaps = 10/173 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + + + + + L +++LD L++ +
Sbjct: 63 DQVVAIVDDDVILATELDARINSIVTRLQSQETTLPPRSL-----LQERVLDQLITESVQ 117
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q +G+ + + N S + F +LA EG++ ++ + L
Sbjct: 118 LQMAGKMGMRISDNELNETMVSI----AGRNGMSLEQFEQQLANEGVSYRDAREQIRNEL 173
Query: 160 SRTDVVGMFVGGMR-PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ V VG ++ ++ ++ DPS+
Sbjct: 174 LTSRVQQRQVGSRIRVTDREVENYQQAQQAGGGNTAEYRLAYIFIETEDPSSD 226
>gi|52840553|ref|YP_094352.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52627664|gb|AAU26405.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
Length = 446
Score = 64.5 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 9/164 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ V L G+ A V V + S + I + N +
Sbjct: 22 IALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 76
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L K++L +L+ Q + G+ ++ + I + N +
Sbjct: 77 PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 132
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ ++GI+ +EY + K + + V VG +
Sbjct: 133 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQY 176
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 32/355 (9%), Positives = 97/355 (27%), Gaps = 11/355 (3%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI-PDVSLADSIFS 331
+ L+ + + + I A E+ + + ++L E +S + +
Sbjct: 88 QHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQGISWQEYRQN 147
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+ K+ + V + G I + + + ++ +E +
Sbjct: 148 IRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTSGRIENSNLTYHLKNIVIPLSEEPTTKQ 207
Query: 392 EEFLALGTSMDEISRREKIVSIDL---PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
+ + ++ L + + ++ +
Sbjct: 208 LQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMK 267
Query: 449 PLSKDHTVALPDGSYMW--VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ +G ++ V + V + E + N +
Sbjct: 268 VGQVAGPIRAGNGFHLIKLVAVGGENQRHVITQTHVR-HILLKPDASMVPSEAIKQVNNI 326
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ + GK+F + K + + + N + + P++
Sbjct: 327 YRQI-QSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVK 385
Query: 567 NGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + +V + E K + +L Q + + + +L+SQ + +
Sbjct: 386 TQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINI 440
>gi|322420756|ref|YP_004199979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
gi|320127143|gb|ADW14703.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
Length = 323
Score = 64.5 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 46/158 (29%), Gaps = 9/158 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K + V + L + VV V + + K L K+
Sbjct: 4 LKKLIPVTVAALALCALPGCSDKGQTGAPVVKVNGSVITKPELDRAVKALLAQ--NKVTQ 61
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ + L+ L S L Q + + ++ +V + + +
Sbjct: 62 ALPPEQMKKAA--DSALEQLTSAELLYQEGKKLEIKDLEQQVEQ-----KYQKNRTSFPT 114
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
+ + L G+ E E + K + + V
Sbjct: 115 KEEYEKALKATGMTEAEVREMMRKEIVVNNFVDKQFSS 152
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 40/128 (31%), Gaps = 5/128 (3%)
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ ++ KA L+ + ++G++F + K N F
Sbjct: 195 EEKKKAREKAEALL-KRVQKGEDFAAVAKVESTCPSRANGGELGVFGKGQMTPPFEKAAF 253
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAY 609
+ + +E Y + K+ + + Q + K+ + + +A
Sbjct: 254 ALKGKGELSKVVETEFGYHIIKLEERIAPSNDRFEDVKFQIAQYLKKEQTRKAVAAFLAE 313
Query: 610 LKSQYSVT 617
L+ + +
Sbjct: 314 LRHKAKIE 321
>gi|189485156|ref|YP_001956097.1| rotamase surA-like protein [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|189485167|ref|YP_001956108.1| rotamase surA-like protein [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287115|dbj|BAG13636.1| rotamase surA-like protein [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287126|dbj|BAG13647.1| rotamase surA-like protein [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 351
Score = 64.5 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 36/127 (28%), Gaps = 5/127 (3%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
K F VL V F I G+ + T+ V + + S + +
Sbjct: 1 MKKFFSVLAVTFFIVGVGSIFAAPKKVDQTLAIVNGKPIFESEVNKVFNNLKSDMLASEQ 60
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ + L +IL+ + L I+ + V I H D +
Sbjct: 61 WS----EQKINELKNRILERQIDSILLKNEIKKQKILVSRKEVLEYIKELKKNHAIDEEL 116
Query: 133 SHDVFVS 139
S
Sbjct: 117 SKQNLTY 123
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 38/280 (13%), Positives = 80/280 (28%), Gaps = 25/280 (8%)
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
+ + +E+KK+ A ++K + K+ K + E + + +I
Sbjct: 85 NEIKKQKILVSRKEVLEYIKELKKNHAIDEELSKQNLTYKDLEKSVSEIIRFMKLLGKIL 144
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + F K + + D L K + +
Sbjct: 145 DVNAEKITEAEIKSFYDKVIIKMKGGNPGLSHDKDCLAASVADELKKVFSENVRIKQIFI 204
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
K + A + ++ + VKK+ + AE + L+ +
Sbjct: 205 KNPKGTQDAETQVVQSKVETVKKELQVKSFAEVARKYSEDLISKSRNGDLGI-------- 256
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--- 582
VFS V PI+ + Y K+
Sbjct: 257 ------------FVVKGDLPLVLEKAVFSMKVGDYTKEPIKTDIGYYFIKLEEKLPNRKI 304
Query: 583 --PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ KD S L Q N+ I+ L+++ ++ ++
Sbjct: 305 VFDGKVKDYINSRLLQFNNEQACIRYISTLRTKANIKINK 344
>gi|328952685|ref|YP_004370019.1| SurA domain protein [Desulfobacca acetoxidans DSM 11109]
gi|328453009|gb|AEB08838.1| SurA domain protein [Desulfobacca acetoxidans DSM 11109]
Length = 316
Score = 64.5 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/260 (6%), Positives = 69/260 (26%), Gaps = 10/260 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + S + K + ++ + ++ L+ L+
Sbjct: 27 DEIVAQVNDEVITLSELEQAMKYI------QANPAAGAKVKNNQAFRRQALEMLIDRKLA 80
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ + G+ + + +G + LA++G+ ++ + +
Sbjct: 81 KEEAKRYGITVPEKEIKKTVDDIKQKYGFT---DDETLSKALAKDGMTMEQLRQQLIEQI 137
Query: 160 SRTDVVGMFVGGM-RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ ++ V + S+ + Q + + A +
Sbjct: 138 QQDRLMLSTVRSKVKVSDAEIQQFYEQRYRQADNRVHIKIINLPVAAGSSAEEQEEVRAL 197
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ +A + ++ + + + + + + + ++V
Sbjct: 198 AERILIQARRGESFDKLMETYSKSTPNVPGGDLGYIRQSDIDPRFFEFLSNLRPGEIVPL 257
Query: 279 NQKEADEAFQSLKKGKKFIQ 298
+ + + +
Sbjct: 258 RAPFGFQIIKMVDAKVGKAK 277
Score = 37.9 bits (85), Expect = 5.7, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 48/132 (36%), Gaps = 7/132 (5%)
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+ + EEV + A +++++ + G++F + + S +
Sbjct: 186 SSAEEQEEVRALAERILIQARR-GESFDKLMETYSKSTPNVPGGDLGYIRQSDIDPRFFE 244
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSV 606
+ + + + + K+ ++KVG + + + Q++ ++ L
Sbjct: 245 FLSNLRPGEIVPLRAP--FGFQIIKMVDAKVGKAKSLSEARGEIEQILIREQMAKLFSEY 302
Query: 607 IAYLKSQYSVTV 618
+ ++ + + +
Sbjct: 303 LQSIRQKAHIKI 314
>gi|254417887|ref|ZP_05031611.1| SurA N-terminal domain family [Brevundimonas sp. BAL3]
gi|196184064|gb|EDX79040.1| SurA N-terminal domain family [Brevundimonas sp. BAL3]
Length = 393
Score = 64.5 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 37/145 (25%), Gaps = 11/145 (7%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V +V + + + + + + L+ L+
Sbjct: 2 ADGIVATVNDKIITGFDLRQQMLMLIASSQVQ------PTEQNLPAIQQAALNRLIEQRL 55
Query: 99 LDQFIEDI-GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
Q I L+ + EIA+ + + ++ L + GI + +
Sbjct: 56 KAQEITKFESLKVTDQEIDEEIAQM----ARQAGVTPAAYMEFLQQGGIQPNAFRESLRT 111
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQA 182
+ +V + L
Sbjct: 112 EIGWGQLVPGRFNSRARPSTLQVDQ 136
>gi|115525297|ref|YP_782208.1| hypothetical protein RPE_3295 [Rhodopseudomonas palustris BisA53]
gi|115519244|gb|ABJ07228.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
Length = 305
Score = 64.5 bits (154), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/312 (10%), Positives = 83/312 (26%), Gaps = 27/312 (8%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L F + + + S VV V + + ++Q
Sbjct: 9 LCFAFALLLTTGLSTELRAQSVVVMVNGEPITSYDIDQ-----RSKLTQLSTRKTPP--- 60
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+++++ L++ + + G++ + A G + S +
Sbjct: 61 -----RQEVIEELINEKVKIKEGKKFGIDPSGADIDSSFANM----GSRMRMSPEQLTQT 111
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG-----GMRPSNLLLDQAKRFYFENRSVDYI 195
LA GI + T +V G + L + + E+
Sbjct: 112 LANSGIRPDTLKHRMRAEMVWTSLVRGRFKDSLLVGEKDIQAALGDSDKPAGESFEYQMR 171
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+ A S + E + + E + + ++ +L
Sbjct: 172 PVVLIVPRNAAPASREARMKEAEALRARVQTCEEANALFKSMPNAAIRATVSKTSADLPP 231
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQK-----EADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
+ +K + E + + KK + ++ E+ ++ S
Sbjct: 232 SLRELLDKTPIGHLTAPEATKQGVEMVALCSRKPTTADTPKKREIREKMFAEKFEAKSKA 291
Query: 311 SLGSFSKEYIPD 322
L K + +
Sbjct: 292 YLRDVRKAAMVE 303
>gi|148262224|ref|YP_001228930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
uraniireducens Rf4]
gi|146395724|gb|ABQ24357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
uraniireducens Rf4]
Length = 310
Score = 64.1 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 55/168 (32%), Gaps = 6/168 (3%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+I ++ + + K + +A +++ + K G NF ++ K
Sbjct: 129 AKISDTELQDFYNKNKDKFKTGEQVKASHILVKTEPEAQEILKQL-KAGGNFDELAKKHS 187
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---- 581
+ D VF + ++ Y + K+T +
Sbjct: 188 IDAAAAKGGDLGWFGKGAMLPDFEKAVFGLKEGAI-SGVVKTKFGYHIIKLTGKRPAGIR 246
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
+ KD+ + + +++ + LK +T+ +++++ G
Sbjct: 247 PFDEVKDQLKAAILPEKQQEVFKKLKEDLKKSAKLTIKEDVLKTLDGG 294
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/114 (11%), Positives = 34/114 (29%), Gaps = 17/114 (14%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSG-------SSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
L + ++G + S +G + V + S + + +
Sbjct: 9 LLTIALCVTALFGCKAKVGSEAGKESQKKSGQVLAEVNGSVITTSDYNKELETLPPYLKP 68
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ K++LD ++ + Q + G++ V ++A
Sbjct: 69 MT---------ETPEGKKELLDTMIVRELILQQADKDGIDKS-QAVADKLADLK 112
>gi|54293303|ref|YP_125718.1| hypothetical protein lpl0351 [Legionella pneumophila str. Lens]
gi|81679326|sp|Q5WZN0|SURA_LEGPL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|53753135|emb|CAH14582.1| hypothetical protein lpl0351 [Legionella pneumophila str. Lens]
Length = 429
Score = 64.1 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 9/164 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ V L G+ A V V + S + I + N +
Sbjct: 5 IALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L K++L +L+ Q + G+ ++ + I + N +
Sbjct: 60 PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ ++GI+ +EY + K + + V VG
Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVDQY 159
Score = 38.3 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 33/355 (9%), Positives = 97/355 (27%), Gaps = 11/355 (3%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI-PDVSLADSIFS 331
+ L+ + + + I A E+ + + ++L E +S + +
Sbjct: 71 QHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQGISWQEYRQN 130
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+ K+ + V + G I + + + ++ +E R
Sbjct: 131 IRKEMLISRVQQKAVGKDIIVTNEQVDQYLKTAGRIENSNLTYHLKNIVIPLSEEPTTRQ 190
Query: 392 EEFLALGTSMDEISRREKIVSIDL---PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
+ + ++ L + + ++ +
Sbjct: 191 LQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMK 250
Query: 449 PLSKDHTVALPDGSYMW--VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ +G ++ V + V + E + N +
Sbjct: 251 VGQVAGPIRAGNGFHLIKLVAVGGENQRHVITQTHVR-HILLKPDASMVPSEAIKQVNNI 309
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ + GK+F + K + + + N + + P++
Sbjct: 310 YRQI-QSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVK 368
Query: 567 NGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + +V + E K + +L Q + + + +L+SQ + +
Sbjct: 369 TQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINI 423
>gi|239832961|ref|ZP_04681290.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
intermedium LMG 3301]
gi|239825228|gb|EEQ96796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
intermedium LMG 3301]
Length = 456
Score = 64.1 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/242 (10%), Positives = 69/242 (28%), Gaps = 11/242 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + ++ ID+ + + K + + + L
Sbjct: 203 DQAAGDLDPQFSRLPAEQRRLAALAALIDIKAMAGEAEKEKLDQSKEFKDRMEFLRERAL 262
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + D KE + +V+ VKT EE + +
Sbjct: 263 HNEYFKDAVVDKISDDDVRARYDKEIAAMPPQV------EVRARHILVKTKEEAEAIIKK 316
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
L G F D+ K +N + + F+ P+
Sbjct: 317 LA-----GGAKFEDLAKESSTDGTASNGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPV 371
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
++ + V ++ + + D+ + ++ ++ + L+ + D +++
Sbjct: 372 QSQFGFHVIQLEDRRTKQPPAFDQVKDQIRSIIMRERYVETVKKLRDGMKIDYKDPAVEK 431
Query: 626 YL 627
+
Sbjct: 432 AM 433
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 73/197 (37%), Gaps = 4/197 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+D+++A Y+K ++
Sbjct: 245 DQSKEFKDRMEFLRERALHNEYFKDAVVDKISDDDVRARYDKEIAAMPPQVEVRARHILV 304
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L G KF LA+E + LG F++ + + F+L
Sbjct: 305 KTKEEAEAIIKKLAGGAKFEDLAKESSTDGTASNGGDLGYFTEGQMV-PEFEKAAFALKP 363
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FG+ + + + + +F +VK I + + + E VK+ ++
Sbjct: 364 GEYTKEPVQSQFGFHVIQLEDRRTKQPPAFDQVKDQIRSIIMRERYVETVKKLRDGMKID 423
Query: 395 LALGTSMDEISRREKIV 411
+
Sbjct: 424 YKDPAVEKAMKDAAAAQ 440
Score = 41.8 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 22/288 (7%), Positives = 66/288 (22%), Gaps = 18/288 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ + +V + + + S+ + L L+ +
Sbjct: 186 TKVLATVNGKDITVGEVDQAAGDLDPQFSR----------LPAEQRRLAALAALIDIKAM 235
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
E L+ E F + + + + I++ + Y K +
Sbjct: 236 AGEAEKEKLDQS-----KEFKDRMEFLRERALHNE--YFKDAVVDKISDDDVRARYDKEI 288
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + + L + L + E
Sbjct: 289 AAMPPQVEVRARHILVKTKEEAEAIIKKLAGGAKFEDLAKESSTDGTASNGGDLGYFTEG 348
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ + + + +L+ K + + + ++
Sbjct: 349 QMVPEFEKAAFALKPGEYTKEPVQSQFGFHVIQLEDRRTKQPPAFDQVKDQIRSIIMRER 408
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
E + + K + A E+ + + K+ P+ +
Sbjct: 409 YVETVKKLRDGMK-IDYKDPAVEKAMKDAAAAQEGADKDDAPEEAAPQ 455
>gi|171060558|ref|YP_001792907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
SP-6]
gi|170778003|gb|ACB36142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
SP-6]
Length = 336
Score = 64.1 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 10/128 (7%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R+ S + + + V + + +++ S V +P ++ L
Sbjct: 13 LRRVSTGLLTALVMGVASLS--------SGPALAQSVFAARVNGVGIPAQRLERQFEALL 64
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
++I AR+ L ++ LD L+ L Q +GLEAD V I +
Sbjct: 65 R--ERQIHIARLQNPARARELRREALDRLIGIELLGQQARALGLEADDAAVERAITEARS 122
Query: 125 FHGKDNKF 132
F
Sbjct: 123 RFRSAEVF 130
>gi|302337922|ref|YP_003803128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
smaragdinae DSM 11293]
gi|301635107|gb|ADK80534.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
smaragdinae DSM 11293]
Length = 357
Score = 64.1 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 52/357 (14%), Positives = 107/357 (29%), Gaps = 68/357 (19%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
S S V +P + + ++ + L ++L++L+
Sbjct: 57 SPSDNAAIVNGVAIPLDRYQQQLSVIQQQYLMQ---GISVPEEQMAELKGQVLESLIDQE 113
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
L Q + G EAD +V ++ + S + + LA++GI+E++++ K
Sbjct: 114 LLAQEAKGQGYEADQTKVDQQLQQIKGQFP-----SEEQYYQALAQQGISEQDFLAELKK 168
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
L V + ++
Sbjct: 169 SLVVQQFVSDRFAS---------------------------------QVAVTEEDSKTYY 195
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + PE R S+ILF V E +++ + +AE + K +L
Sbjct: 196 DDNPSYFVQPERVRASHILFSVAEDASDQDVAAAKTKAESALERYKNGEEFSDLARELSE 255
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
LG F + + + K G+
Sbjct: 256 GPSASQ-------------------------GGDLGFFGRNQMVKPFEDAAFSM--KVGE 288
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ + FG+ + ++ T+ F +VK I++ + + E VK +E
Sbjct: 289 VSDPVRTKFGFHLIRLTARNEKGTLPFDQVKPQISDHLYKLRLGELVKAFLDEQKEK 345
>gi|90580797|ref|ZP_01236600.1| putative survival protein SurA [Vibrio angustum S14]
gi|90438065|gb|EAS63253.1| putative survival protein SurA [Vibrio angustum S14]
Length = 433
Score = 64.1 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/193 (11%), Positives = 61/193 (31%), Gaps = 11/193 (5%)
Query: 22 FVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ ++ G+S + V++V + S K +++ + +
Sbjct: 8 VLSLMMMGMSATSMAAPQELDQVVMTVNDGVILQSDVSAMLKTVRLNAAEEHQQLPPNNI 67
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L ++++D L+ Q + +G+ D ++ IA K S D
Sbjct: 68 -----LRQQVMDQLILENLQIQQAQQLGIRIDDSQLDQAIADV----AKQRNMSVDQLRQ 118
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
LA+ G++ + + + ++ + V ++ ++ + N
Sbjct: 119 SLAKAGVSYSMFREQMRNDMLASEARTIIVRKRVNVLPQEVESLAKQMAEQTQQNVQYNI 178
Query: 200 RHVPAIADPSNAV 212
+ D
Sbjct: 179 SQIQIRVDEDADK 191
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 27/372 (7%), Positives = 100/372 (26%), Gaps = 8/372 (2%)
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
+E Q N + + +E L ++ + + +A+++ S+ +
Sbjct: 57 EEHQQLPPNNILRQQVMDQLILENLQIQQAQQLGIRIDDSQLDQAIADVAKQRNMSVDQL 116
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
+ + T ++ + V ++ +
Sbjct: 117 RQSLAKAGVSYSMFREQMRNDMLASEARTIIVRKRVNVLPQEVESLAKQMAEQ--TQQNV 174
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
N +I ++ + +R + + ++ + + G+
Sbjct: 175 QYNISQIQIRVDEDADKAERDKAKQEAEDIVAQLKKGANFSQLAYRYSKGPKALKGGEWG 234
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
+ +F +++ Y ++I + + EV +
Sbjct: 235 WMSKAEMPTVFADQIQNNGKDAIIGPFRSGVGYHILKINDVKGMPSVSVVEVKARHILIK 294
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ + ++ ++ + F K + ++ +
Sbjct: 295 PSMILSDAAAKAELEKIRQSIISGKQTFAAAAKAYSEDPGSAANGGQLGWQVPDMYAPAF 354
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDS 605
+V + PV+ + P ++ + + +V K++ + + +
Sbjct: 355 KDKVETLPVDKI-SEPFKSTFGWHIVEVEGRRKVDRTDAAMKNRAAQIIFNRKFNEEAQT 413
Query: 606 VIAYLKSQYSVT 617
+ L++ +
Sbjct: 414 WLQELRAGAYIE 425
>gi|122070648|sp|Q5ZYR3|SURA_LEGPH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
Length = 429
Score = 64.1 bits (153), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 9/164 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ V L G+ A V V + S + I + N +
Sbjct: 5 IALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L K++L +L+ Q + G+ ++ + I + N +
Sbjct: 60 PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ ++GI+ +EY + K + + V VG +
Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQY 159
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 32/355 (9%), Positives = 97/355 (27%), Gaps = 11/355 (3%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI-PDVSLADSIFS 331
+ L+ + + + I A E+ + + ++L E +S + +
Sbjct: 71 QHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQGISWQEYRQN 130
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+ K+ + V + G I + + + ++ +E +
Sbjct: 131 IRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTSGRIENSNLTYHLKNIVIPLSEEPTTKQ 190
Query: 392 EEFLALGTSMDEISRREKIVSIDL---PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
+ + ++ L + + ++ +
Sbjct: 191 LQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMK 250
Query: 449 PLSKDHTVALPDGSYMW--VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ +G ++ V + V + E + N +
Sbjct: 251 VGQVAGPIRAGNGFHLIKLVAVGGENQRHVITQTHVR-HILLKPDASMVPSEAIKQVNNI 309
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ + GK+F + K + + + N + + P++
Sbjct: 310 YRQI-QSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVK 368
Query: 567 NGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + +V + E K + +L Q + + + +L+SQ + +
Sbjct: 369 TQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINI 423
>gi|167031450|ref|YP_001666681.1| SurA domain-containing protein [Pseudomonas putida GB-1]
gi|166857938|gb|ABY96345.1| SurA domain [Pseudomonas putida GB-1]
Length = 441
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/175 (16%), Positives = 55/175 (31%), Gaps = 12/175 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S + I+++ G V + L++++L+ L+
Sbjct: 33 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPP-----TGALEQQVLERLIVENLQ 87
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S D F + LA +G++ + + + +
Sbjct: 88 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALAHDGLSFDDAREQVKREM 143
Query: 160 SRTDVVGMFVGGMRP---SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ V V + S +Y + N A S+
Sbjct: 144 IISRVRQRRVAERIQVSEQEVKNFLNSDMGKMQMSEEYRLANILIPTPEAANSDD 198
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/328 (9%), Positives = 96/328 (29%), Gaps = 9/328 (2%)
Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
+ +SL F D D K+ + VS + ++
Sbjct: 113 RNGMSLDQFRAALAHDGLSFDDAREQVKREMIISRVRQRRVAERIQVSEQEVKNFLNSDM 172
Query: 367 VKKDIANQMRITKA---SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
K ++ + R+ + + + +G ++ + + +
Sbjct: 173 GKMQMSEEYRLANILIPTPEAANSDDIQKAARKVGDVYQQLRQGADFGQMAIANSASENA 232
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK-LEEV 482
G+ + F P+ + ++ ++++E + +EV
Sbjct: 233 LEGGEMGWRKAGQLPPDFAKMLSSMPVGEITQPIRIPNGFIILKLEEKRGGSENVLRDEV 292
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NEN 541
+ +E + + + + + K G++F ++ K+ + ++ +
Sbjct: 293 HVRHILIKPSEIRSEAATEQLAERLYDRIKNGEDFGELAKSFSEDPGSALNGGDLNWVDP 352
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL---TQMM 598
+ Q+ + V P + + V +V + E+ + L
Sbjct: 353 NSLVPEFREQMANAQQG-VVTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALSVLRNRK 411
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ L + + ++ + V + +
Sbjct: 412 YDEELQTWLRQIRDEAYVEIKLPGADQA 439
>gi|307609120|emb|CBW98563.1| hypothetical protein LPW_03901 [Legionella pneumophila 130b]
Length = 429
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 9/164 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ V L G+ A V V + S + I + N +
Sbjct: 5 IALVCALFSGVCFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L K++L +L+ Q + G+ ++ + I + N +
Sbjct: 60 PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ ++GI+ +EY + K + + V VG +
Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQY 159
Score = 39.1 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 32/355 (9%), Positives = 97/355 (27%), Gaps = 11/355 (3%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI-PDVSLADSIFS 331
+ L+ + + + I A E+ + + ++L E +S + +
Sbjct: 71 QHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQGISWQEYRQN 130
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+ K+ + V + G I + + + ++ +E +
Sbjct: 131 IRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTAGRIENSNLTYHLKNIVIPLSEEPTTKQ 190
Query: 392 EEFLALGTSMDEISRREKIVSIDL---PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
+ + ++ L + + ++ +
Sbjct: 191 LQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMK 250
Query: 449 PLSKDHTVALPDGSYMW--VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ +G ++ V + V + E + N +
Sbjct: 251 VGQVAGPIRAGNGFHLIKLVAVGGENQRHVITQTHVR-HILLKPDASMVPSEAIKQVNNI 309
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ + GK+F + K + + + N + + P++
Sbjct: 310 YRQI-QSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVK 368
Query: 567 NGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + +V + E K + +L Q + + + +L+SQ + +
Sbjct: 369 TQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINI 423
>gi|254283287|ref|ZP_04958255.1| chaperone SurA [gamma proteobacterium NOR51-B]
gi|219679490|gb|EED35839.1| chaperone SurA [gamma proteobacterium NOR51-B]
Length = 435
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 47/402 (11%), Positives = 101/402 (25%), Gaps = 66/402 (16%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S I ++ G + +E L ++ LD L+ +
Sbjct: 41 EQIVAIVDDDIILASELRERLDTLKVNIERQ-GAEMPAEDI----LVRETLDRLILESIQ 95
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ ++ + R +N + F L EG + E + K +
Sbjct: 96 LQMGERYGIRIPDTQLDEALRRVAS----NNGLTLAQFRGALEAEGRSYAEMRESVRKEM 151
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ V V + + + + +++ + ++
Sbjct: 152 TIQRVQQGNVSRNINISDAEIDNYLETEAGQELTEPQYRVFQALIPVNSTDSEAERASKE 211
Query: 220 YKDN-------YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE---- 268
+ +S + ++ + + E
Sbjct: 212 AFVDSALSAILDGQAFESAVSVTQPYAFQGGDLGWRKLSDIPSMFTAIVPTLDRGETGKV 271
Query: 269 ----------------------IRTVEQLVFPNQKEADEA---------FQSLKKGKKFI 297
V ++ + EA Q L G F
Sbjct: 272 ESGSGFHLVHVADVRGRERVIAQTKVRHILVKPSEVRTEAETEQLAADLRQRLLDGADFA 331
Query: 298 QLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+LA+E + LG S + ++ + D P + FG+ + V
Sbjct: 332 ELAKEYSEDIGSAQEGGDLGWTSAGQMV-PEFEQAMA-ETEVDDIAPPVRSQFGWHVLEV 389
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
+ + K R A+ Y+ +
Sbjct: 390 TGRRD---------KDVSDEMRRNQVANYLHDAKYQEELDAW 422
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/350 (10%), Positives = 103/350 (29%), Gaps = 6/350 (1%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
++L+ + + ++ + A + S + ++L F + +
Sbjct: 87 DRLILESIQLQMGERYGIRIPDTQLDEALRRVASNNGLTLAQFRGALEAEGRSYAEMRES 146
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
+K + ++S+ + + + ++ Q R+ +A V E
Sbjct: 147 VRKEMTIQRVQQGNVSRNINISDAEIDNYLETEAGQELTEPQYRVFQALIPVNSTDSEAE 206
Query: 393 EFLALGTSMDE-ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
+ + V G +F
Sbjct: 207 RASKEAFVDSALSAILDGQAFESAVSVTQPYAFQGGDLGWRKLSDIPSMFTAIVPTLDRG 266
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ V G + V + + + + + V+T E A L
Sbjct: 267 ETGKVESGSG-FHLVHVADVRGRERVIAQTKVRHILVKPSEVRTEAETEQLAADLRQRLL 325
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571
+G +F ++ K + + + + + Q + P+ + +
Sbjct: 326 -DGADFAELAKEYSEDIGSAQEGGDLGWTSAGQMVPEFEQAMAETEVDDIAPPVRSQFGW 384
Query: 572 VVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
V +VT + V + +++ +YL ++ LD+ + ++++ V +
Sbjct: 385 HVLEVTGRRDKDVSDEMRRNQVANYLHDAKYQEELDAWLRKIRTEAFVDI 434
>gi|307132630|ref|YP_003884646.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Dickeya dadantii
3937]
gi|306530159|gb|ADN00090.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Dickeya dadantii
3937]
Length = 430
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 9/151 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
L + + + V V S + + +Q+ G + +
Sbjct: 6 ALVLGLALSANMAFAAPQEVNKIAAVVDNSVVLESDINSLLQSVKLN-AQEAGQQLPDD- 63
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L +IL+ L+ + Q + +G++ ++ IA N+ S D S
Sbjct: 64 ---ATLRHQILERLIMDNIILQMAQKMGVQVTDEQLDRSIANIAA----QNRMSVDQLRS 116
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
RLA EG++ Y K + +V V
Sbjct: 117 RLAAEGVSFDTYRSQIRKDMIIAEVRNSEVR 147
Score = 41.4 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 17/197 (8%), Positives = 54/197 (27%), Gaps = 5/197 (2%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G+ P + LF + + + +++ ++ E
Sbjct: 229 GQMGWGRPQELPSLFAERLTNPQKGQVIGPIRSGVGFHILRVNDTRGGDQSVSVTEVHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
+ V + ++ + + +F + K L T NQ + +
Sbjct: 289 HILLRTSVVMNDAQARARLEDIASQIKSGKLSFTNAAKQLSQDPGTANQGGDLGWSSPDM 348
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKD 601
+ + P+ + + + ++ + +KD+ L +
Sbjct: 349 YDPSFRDALTQLKKGEISAPVHSSFGWHLIQLLDTRQVDKTDAAQKDRAYRMLFNRKFAE 408
Query: 602 LLDSVIAYLKSQYSVTV 618
+ + ++ V +
Sbjct: 409 EAQTWMQEKRAAAYVKI 425
>gi|313679732|ref|YP_004057471.1| ppic-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
profundus DSM 14977]
gi|313152447|gb|ADR36298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanithermus
profundus DSM 14977]
Length = 308
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 13/175 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLVSGA 97
+ V VG + + + + Q G S+ AR+ L K+ L +V A
Sbjct: 24 ETVVARVGDHVITQADLDLQFDLF---LRQSTGGAALSDEARAQLAPLKKQYLQRMVQDA 80
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ Q E +GL D + + ++ + F LA + Y +
Sbjct: 81 VVVQAAERLGLAPDEATIDRRVEQAKQRLSGEAAF--------LAALKQYGIPDVATYRR 132
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
M +G +R + + A R + Y I PS
Sbjct: 133 MTYDAMAYKAMIGWIRQRLRISEAATRMLYLLDREAYAEPEQICTAHILVPSREE 187
>gi|149917238|ref|ZP_01905737.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Plesiocystis
pacifica SIR-1]
gi|149821845|gb|EDM81239.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Plesiocystis
pacifica SIR-1]
Length = 441
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/366 (10%), Positives = 110/366 (30%), Gaps = 62/366 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V V + F + + +L + + + + R K I+D L+ L
Sbjct: 44 DPVAKVNDVVITGELFHSIYDLKLQKYADRNRDIPKTADRR---YRKSIVDRLIYQEILR 100
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q + + D + +
Sbjct: 101 QEAKKRSIAYDKAELQQ--------------------------------------REDAQ 122
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
+ + +++ + + + ++ + +EK
Sbjct: 123 KRGIKDW-----EKHLRRRGESEESLRQLYVAELLERAVLEADGKLAVTDEEIAGEYEKV 177
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
K N + +R+ + ++ + + E K+++ ++ E++
Sbjct: 178 KPN-YTKDKERVRARHILIRVGPEQKPAPGEPVPEPTEAQKKEWEEAALKKAEEIY---- 232
Query: 281 KEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
++ +G F QLA E + LG F+ + + + +D+ + G+
Sbjct: 233 ------AKASAEGADFAQLAIELSEGPSARKGGDLGIFAADRMVE-EFSDAA-FTLEPGE 284
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
+ + FG+ I V + + ++ + ++ K + ++ + L E A+
Sbjct: 285 VSKPVKTKFGFHIIKVEGKYAPGELPIEALEDQLRERLSARKLHQGRRDLKESLLESYAV 344
Query: 398 GTSMDE 403
M++
Sbjct: 345 ENHMEK 350
>gi|157362935|ref|YP_001469702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga lettingae
TMO]
gi|157313539|gb|ABV32638.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotoga lettingae
TMO]
Length = 343
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/203 (9%), Positives = 58/203 (28%), Gaps = 10/203 (4%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS--WKQELGMISQKIG 72
K+F+ L + + + + ++ V V + + L I
Sbjct: 3 KVFMFGLILILSLVAIGQE--TQPATAVVAEVNGVAITMEELNREANVDRLLSQIQSVDA 60
Query: 73 FVVNSERARSVGL------DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+ S G+ +++L+NL+ + Q E +G+ + ++
Sbjct: 61 TFYDVLVNTSEGVNLLLRYKREVLNNLIDQVLIKQIGEKMGVTVSKDNIENMVSTELNKT 120
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ L + G+ + + + + S+ + + +
Sbjct: 121 LTQYGMTESDLDWYLKQAGLGDINSFKDRLRWIFTVQQTVSLIQQQVTSSATVTEEEARQ 180
Query: 187 FENRSVDYIVLNNRHVPAIADPS 209
F ++ +Y +
Sbjct: 181 FYEQNREYFAVEEAAKLLRITVD 203
>gi|254473455|ref|ZP_05086852.1| SurA N-terminal domain family protein [Pseudovibrio sp. JE062]
gi|211957571|gb|EEA92774.1| SurA N-terminal domain family protein [Pseudovibrio sp. JE062]
Length = 313
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/217 (14%), Positives = 60/217 (27%), Gaps = 16/217 (7%)
Query: 20 VLFVPFLIWGLSDALFSV-SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+ ++ + L S + S V V + + K
Sbjct: 10 LFVAASILAPVGPMLTSAEAASKIVAVVNGRPITSYELQQRSKLISLTTR---------- 59
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
A S +K D L+ A + +G+ +V A + K S F
Sbjct: 60 -APSSIAKRKAKDELIDEALKLAEAKRVGVSISDSKVDDAFATI----AQRVKMSPSQFK 114
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
L++ G+N + +S ++VV N A EN+
Sbjct: 115 QALSQSGVNPRTLKSRLRAEISWSEVVMQRFRATVRINESDVIAALQGRENKDDSGATSV 174
Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ I ++ F+ + + R +
Sbjct: 175 EYDLQRIIFVIPKNSSKTFKNKRVSEMKKLRARFTSC 211
>gi|225628141|ref|ZP_03786176.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti str. Cudo]
gi|225616966|gb|EEH14013.1| peptidyl-prolyl cis-trans isomerase [Brucella ceti str. Cudo]
Length = 381
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/242 (10%), Positives = 71/242 (29%), Gaps = 11/242 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + +++ ID+ + + K + + + L
Sbjct: 128 DQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERAL 187
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + D KE + +V+ VKT EE +
Sbjct: 188 HNEYFKNAIVDKISDADVRARYDKEIAAMPPQV------EVRARHILVKTKEEA-----E 236
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+++ + G F D+ K ++ + + F+ P+
Sbjct: 237 AIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPV 296
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ Y V ++ + + D+ + ++ ++ + L+ + D I++
Sbjct: 297 QTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEK 356
Query: 626 YL 627
+
Sbjct: 357 AM 358
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 83/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+ +++A Y+K ++
Sbjct: 170 DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 229
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+ S LG FS+ + + F+L
Sbjct: 230 KTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKP 288
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 289 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 346
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 347 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 381
Score = 37.1 bits (83), Expect = 9.7, Method: Composition-based stats.
Identities = 17/254 (6%), Positives = 58/254 (22%), Gaps = 25/254 (9%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S + ++ + + + ++ L L+ +
Sbjct: 111 SKVLATINGKDITVGEVDQAAGDLDPQFAR----------LPVEQRRLAALAALIDIKAM 160
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
E ++ ++ F + + + I +K
Sbjct: 161 AGEAEK-----------DKLDQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARY 209
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD----YIVLNNRHVPAIADPSNAVLTQ 215
+ +R ++L+ + + ++ + L S L
Sbjct: 210 DKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGY 269
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
+ E + + + + +L+ K Y + + +
Sbjct: 270 FSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSII 329
Query: 276 VFPNQKEADEAFQS 289
+ E + +
Sbjct: 330 MRERYIETVKKLRD 343
>gi|148358511|ref|YP_001249718.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella pneumophila
str. Corby]
gi|296105860|ref|YP_003617560.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella pneumophila
2300/99 Alcoy]
gi|148280284|gb|ABQ54372.1| peptidyl-prolyl cis-trans isomerase D (SurA) [Legionella
pneumophila str. Corby]
gi|295647761|gb|ADG23608.1| peptidyl-prolyl cis-trans isomerase SurA [Legionella pneumophila
2300/99 Alcoy]
Length = 429
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 9/164 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ V L G+ A V V + S + I + N +
Sbjct: 5 IALVCALFSGICFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L K++L +L+ Q + G+ ++ + I + N +
Sbjct: 60 PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ ++GI+ +EY + K + + V VG +
Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQY 159
Score = 39.1 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 32/355 (9%), Positives = 97/355 (27%), Gaps = 11/355 (3%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI-PDVSLADSIFS 331
+ L+ + + + I A E+ + + ++L E +S + +
Sbjct: 71 QHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQGISWQEYRQN 130
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+ K+ + V + G I + + + ++ +E +
Sbjct: 131 IRKEMLISRVQQKAVGKDIIVTNEQVEQYLKTAGRIENSNLTYHLKNIVIPLSEEPTTKQ 190
Query: 392 EEFLALGTSMDEISRREKIVSIDL---PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
+ + ++ L + + ++ +
Sbjct: 191 LQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMK 250
Query: 449 PLSKDHTVALPDGSYMW--VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ +G ++ V + V + E + N +
Sbjct: 251 VGQVAGPIRAGNGFHLIKLVAVGGENQRHVITQTHVR-HILLKPDASMVPSEAIKQVNNI 309
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ + GK+F + K + + + N + + P++
Sbjct: 310 YRQI-QSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVK 368
Query: 567 NGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + +V + E K + +L Q + + + +L+SQ + +
Sbjct: 369 TQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINI 423
>gi|326386746|ref|ZP_08208367.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208799|gb|EGD59595.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
nitrogenifigens DSM 19370]
Length = 467
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 7/127 (5%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + + + + G + +E L ++L NL+ Q
Sbjct: 76 AIVNGEIITGTDIDQRLALIIN--ANGGGNKIPAEE--QERLRAQVLRNLIDETLQIQEA 131
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ +G+E D V R ++ + L G + ++
Sbjct: 132 KGVGIEIDEEEVNQSFDRVAQ---QNFGQNTAALEKYLTSIGSSAASLKRQIKGEMAWQR 188
Query: 164 VVGMFVG 170
++ V
Sbjct: 189 LLRRNVQ 195
>gi|251788205|ref|YP_003002926.1| peptidyl-prolyl cis-trans isomerase SurA [Dickeya zeae Ech1591]
gi|247536826|gb|ACT05447.1| Peptidylprolyl isomerase [Dickeya zeae Ech1591]
Length = 430
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 53/428 (12%), Positives = 115/428 (26%), Gaps = 63/428 (14%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
L + + + V V S + + +Q+ G + +
Sbjct: 6 ALVLGLALSANMAFAAPQEVNKIAAVVDNSVVLESDINSLLQSVKLN-AQEAGQQLPDD- 63
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L +IL+ L+ + Q + +G++ ++ IA N+ S D S
Sbjct: 64 ---ATLRHQILERLIMDNIILQMAQKMGVQVTDEQLDRSIANIAA----QNRMSIDQLRS 116
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY---------FENR 190
RL EG++ Y K + DV V + N
Sbjct: 117 RLTAEGVSFDTYRGQIRKDMIIADVRNSEVRRRVTVLPQEVDSLAQQLASQGANGPEVNL 176
Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
S + L D + ++ + ++ + + +
Sbjct: 177 SQILLPLPENPTQDQVDKAESLANRLVKEASQGADFGKLAITYSADPQALKGGQMGWGRP 236
Query: 251 DELQAEYEKNKEKYFSPEI-----------------------------RTVEQLVFPNQK 281
EL + + +I ++
Sbjct: 237 QELPTLFAERLTNPQKGQIVGPIRSGVGFHILRVNDTRGGAQAVSVTEVHARHILLTTSV 296
Query: 282 EADEAFQSLK--------------KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
++A K QL+++ G + LG S + D + D
Sbjct: 297 VMNDAQARAKLEEVAGQIKSGKLSFANAAKQLSQDPGTANQGGDLGWASP-EMYDPAFRD 355
Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
++ KKG+ + +H SFG+ + + + + + ++ A E
Sbjct: 356 ALT-QLKKGEISTPVHSSFGWHLIQLLDTREVDKTDAAQKERAYRMLFNRKFAEEAQTWM 414
Query: 388 YKRLEEFL 395
++
Sbjct: 415 QEKRAAAY 422
Score = 41.8 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 17/197 (8%), Positives = 55/197 (27%), Gaps = 5/197 (2%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G+ P + LF + + + +++ ++ E
Sbjct: 229 GQMGWGRPQELPTLFAERLTNPQKGQIVGPIRSGVGFHILRVNDTRGGAQAVSVTEVHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
+ V + +K ++ + +F + K L T NQ + +
Sbjct: 289 HILLTTSVVMNDAQARAKLEEVAGQIKSGKLSFANAAKQLSQDPGTANQGGDLGWASPEM 348
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKD 601
+ + P+ + + + ++ + +K++ L +
Sbjct: 349 YDPAFRDALTQLKKGEISTPVHSSFGWHLIQLLDTREVDKTDAAQKERAYRMLFNRKFAE 408
Query: 602 LLDSVIAYLKSQYSVTV 618
+ + ++ V +
Sbjct: 409 EAQTWMQEKRAAAYVKI 425
>gi|182420516|ref|ZP_02643225.2| foldase protein PrsA [Clostridium perfringens NCTC 8239]
gi|182624265|ref|ZP_02952050.1| foldase protein PrsA [Clostridium perfringens D str. JGS1721]
gi|177910483|gb|EDT72856.1| foldase protein PrsA [Clostridium perfringens D str. JGS1721]
gi|182380295|gb|EDT77774.1| foldase protein PrsA [Clostridium perfringens NCTC 8239]
Length = 325
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 54/172 (31%), Gaps = 6/172 (3%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNLVS 95
+TV +V +K+ + K + + G + + + ++ ++ +LV+
Sbjct: 18 DKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVAQQILQQRQSVVQSLVT 77
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
L + +G++ + ++ K D F L EG E + +
Sbjct: 78 DKVLVAEADKLGIKPSEEDIKKKVDEQ---FENIKKGMGDNFDKALEAEGYTEDTFKEFL 134
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ V ++ S+ + + + V + +
Sbjct: 135 KNQVIAEATVEYATKDVKVSDEDIKKYYDENKQQFVVKAGADVKHLLFPTEE 186
>gi|220919568|ref|YP_002494872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219957422|gb|ACL67806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 317
Score = 64.1 bits (153), Expect = 7e-08, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 17/154 (11%)
Query: 20 VLFVPFLIWGLSDALFSVSGSST----VVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+L L G + SG V V + + + + +
Sbjct: 8 ILIATALAAGCGRCGGARSGERPAPGAVAVVNGEPIAPDAVARELRDAQAGAEGQG---- 63
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+A L +++LD+LV A L Q + +V F ++
Sbjct: 64 ---QATGDVLRRRVLDDLVDRALLLQQARARSIVVGQDQVER------AFLRLRAEYPGT 114
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
F LA+E +++ E L+ + V
Sbjct: 115 HFDDLLAQERLSQAELKARLKDQLTVERLFEQEV 148
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/209 (10%), Positives = 58/209 (27%), Gaps = 6/209 (2%)
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM-WVQIKESIPARDRKLEE 481
+ ++ L + K + L + VQ+ ++ R
Sbjct: 108 RAEYPGTHFDDLLAQERLSQAELKARLKDQLTVERLFEQEVFPQVQVVDAEVERYYAEHG 167
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
+ ++ +A Q+ + + + F ++ + + + +
Sbjct: 168 AEFQEPERVHVLQIVVASREEAAQVREKLRRNPQTFAEVARRSSIAPEGKSGGDLGLIGR 227
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQM 597
+ FS PV V + + +FKV K Q + + L +
Sbjct: 228 GAGFPEVFDTCFSLPVN-VISDVTPSPYGFHLFKVVEKKPAQRRTLEQARAEIAEKLGRE 286
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ L+ + + + + +
Sbjct: 287 KRAGAQAEYLEALRKRAQIDIDEKALAAV 315
>gi|237816303|ref|ZP_04595296.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus str. 2308 A]
gi|237788370|gb|EEP62585.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus str. 2308 A]
Length = 381
Score = 64.1 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/242 (10%), Positives = 71/242 (29%), Gaps = 11/242 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + +++ ID+ + + K + + + L
Sbjct: 128 DQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERAL 187
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + D KE + +V+ VKT EE +
Sbjct: 188 HNEYFKNAIVDKISDADVRARYDKEIAAMPPQV------EVRARHILVKTKEEA-----E 236
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+++ + G F D+ K ++ + + F+ P+
Sbjct: 237 AIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPV 296
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ Y V ++ + + D+ + ++ ++ + L+ + D I++
Sbjct: 297 QTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEK 356
Query: 626 YL 627
+
Sbjct: 357 AM 358
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 83/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+ +++A Y+K ++
Sbjct: 170 DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 229
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+ S LG FS+ + + F+L
Sbjct: 230 KTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKP 288
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 289 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 346
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 347 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 381
Score = 37.1 bits (83), Expect = 9.9, Method: Composition-based stats.
Identities = 17/254 (6%), Positives = 58/254 (22%), Gaps = 25/254 (9%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S + ++ + + + ++ L L+ +
Sbjct: 111 SKVLATINGKDITVGEVDQAAGDLDPQFAR----------LPVEQRRLAALAALIDIKAM 160
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
E ++ ++ F + + + I +K
Sbjct: 161 AGEAEK-----------DKLDQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARY 209
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD----YIVLNNRHVPAIADPSNAVLTQ 215
+ +R ++L+ + + ++ + L S L
Sbjct: 210 DKEIAAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGY 269
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
+ E + + + + +L+ K Y + + +
Sbjct: 270 FSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSII 329
Query: 276 VFPNQKEADEAFQS 289
+ E + +
Sbjct: 330 MRERYIETVKKLRD 343
>gi|242238056|ref|YP_002986237.1| peptidyl-prolyl cis-trans isomerase SurA [Dickeya dadantii Ech703]
gi|242130113|gb|ACS84415.1| Peptidylprolyl isomerase [Dickeya dadantii Ech703]
Length = 433
Score = 64.1 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 56/438 (12%), Positives = 118/438 (26%), Gaps = 62/438 (14%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + + + V V S + + SQ+ G + +
Sbjct: 7 LILGLALSANTVFAAPQVMDKVAAVVDNGVVLESDINSLMQSVKMN-SQESGQQLPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ + Q + +G + ++ IA + N + D SR
Sbjct: 64 --ATLRHQILERLIMDNIVLQMAQKMGAQVSDDQLDRAIANI----AQQNHMTLDQLRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGM-RPSNLLLDQAKRFYFENRSVDYIVLNN 199
LA EGIN Y K ++ DV V +D + S + L+
Sbjct: 118 LAAEGINYDTYRSQIRKDMTIADVRNSEVRRRVTVLPQEVDALAQQIASQGSDKEVNLSQ 177
Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
+P +PS + + + L + + + ++
Sbjct: 178 ILLPLPENPSQEQVDKAESLANRLVKDARQGADFGKLAITYSADPQALKGGQMGWGRPQE 237
Query: 260 NKEKYFSP------------------------------------EIRTVEQLVFPNQKEA 283
+ ++
Sbjct: 238 LPSLFAERLANPEKGQVIGPIRSGVGFHILRVNDTRGGNQAISVTETHARHILLKTSVVM 297
Query: 284 DEAFQSLKKGKKFIQ--------------LAEEQGKSLSDISLGSFSKEYIPDVSLADSI 329
++A K Q L+++ G + LG S + D + D++
Sbjct: 298 NDAQARTKLEDVARQIKSGSTSFAAQAKLLSQDPGSANQGGDLGWASP-DMYDPAFRDAL 356
Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
KKG+ + + SFG+ + + + + + ++ A E +
Sbjct: 357 -MQLKKGEISAPVRSSFGWHLIQLLDTRQVDKTDAAQKERAYRMLFNRKFAEEAQTWMQE 415
Query: 390 RLEEFLALGTSMDEISRR 407
+ S+
Sbjct: 416 KRASAYVKILDSQSQSQN 433
Score = 41.0 bits (93), Expect = 0.66, Method: Composition-based stats.
Identities = 16/198 (8%), Positives = 53/198 (26%), Gaps = 7/198 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G+ P + LF + + + +++ ++ E
Sbjct: 228 GQMGWGRPQELPSLFAERLANPEKGQVIGPIRSGVGFHILRVNDTRGGNQAISVTETHAR 287
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V + +K + + +F K L + NQ +
Sbjct: 288 HILLKTSVVMNDAQARTKLEDVARQIKSGSTSFAAQAKLLSQDPGSANQGGDLGWASPDM 347
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + + P+ + + + ++ + +K++ L
Sbjct: 348 YDPAFRDALMQLKKGEI-SAPVRSSFGWHLIQLLDTRQVDKTDAAQKERAYRMLFNRKFA 406
Query: 601 DLLDSVIAYLKSQYSVTV 618
+ + + ++ V +
Sbjct: 407 EEAQTWMQEKRASAYVKI 424
>gi|54296347|ref|YP_122716.1| hypothetical protein lpp0376 [Legionella pneumophila str. Paris]
gi|81679579|sp|Q5X877|SURA_LEGPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|53750132|emb|CAH11524.1| hypothetical protein lpp0376 [Legionella pneumophila str. Paris]
Length = 429
Score = 64.1 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/182 (13%), Positives = 55/182 (30%), Gaps = 9/182 (4%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ V L G+ A V V + S + I + N +
Sbjct: 5 IALVCALFSGICFAEGKQLLDKVVAIVNDNVITSSELNAQVELSKKQIIAQ-----NMQM 59
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L K++L +L+ Q + G+ ++ + I + N +
Sbjct: 60 PDESVLRKQVLQHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAA----SNHLNLSQMRD 115
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
+ ++GI+ +EY + K + + V VG + + +
Sbjct: 116 EITKQGISWQEYRQNIRKEMLISRVQQKAVGKDIIVTNEQVEQYLKNAGRIENSNLTYHL 175
Query: 200 RH 201
++
Sbjct: 176 KN 177
Score = 39.1 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 32/355 (9%), Positives = 97/355 (27%), Gaps = 11/355 (3%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI-PDVSLADSIFS 331
+ L+ + + + I A E+ + + ++L E +S + +
Sbjct: 71 QHLIDVDLEMQMAKQNGITIENAEIDEAIEKIAASNHLNLSQMRDEITKQGISWQEYRQN 130
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+ K+ + V + G I + + + ++ +E +
Sbjct: 131 IRKEMLISRVQQKAVGKDIIVTNEQVEQYLKNAGRIENSNLTYHLKNIVIPLSEEPTTKQ 190
Query: 392 EEFLALGTSMDEISRREKIVSIDL---PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
+ + ++ L + + ++ +
Sbjct: 191 LQRAKIEAENLLNKIKKGEDFSRLAIEESSGEFALEGGDLGERHLAELPEVFAKEVVHMK 250
Query: 449 PLSKDHTVALPDGSYMW--VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ +G ++ V + V + E + N +
Sbjct: 251 VGQVAGPIRAGNGFHLIKLVAVGGENQRHVITQTHVR-HILLKPDASMVPSEAIKQVNNI 309
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ + GK+F + K + + + N + + P++
Sbjct: 310 YRQI-QSGKDFALMAKQYSLDAASAVKGGDLGWVNPGELVPEFEKTMNSLPLHKVSKPVK 368
Query: 567 NGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + +V + E K + +L Q + + + +L+SQ + +
Sbjct: 369 TQYGWHLIEVIARRQKDDSEAFKKQQVRQFLQQRKFVEAVQNWQQHLRSQAYINI 423
>gi|222100637|ref|YP_002535205.1| Basic membrane protein [Thermotoga neapolitana DSM 4359]
gi|221573027|gb|ACM23839.1| Basic membrane protein [Thermotoga neapolitana DSM 4359]
Length = 329
Score = 64.1 bits (153), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 62/205 (30%), Gaps = 11/205 (5%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS--SFINSWKQELGMISQKIG 72
K+FLV+L V + + + + S+ V V Q + L I+Q
Sbjct: 3 KVFLVILLVTTATF---FSQATTTSSTVVAIVNGQPITSDLLELEADINGILKSIAQIDM 59
Query: 73 FVVNSERARSVGLD------KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
N GL ++L++L+ + Q E G+ V E+ +
Sbjct: 60 RFFNVLTGTEEGLRLLLKYKMEVLNSLIDDLLIQQLAEKEGVGVTDEEVNAEVEKRLKET 119
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ + + L G + E K +T + + + + +
Sbjct: 120 VESMGITLEDLDKFLQSAGYGDLETFKKRLKWHLKTQLSLQRLQEKITQDATVTVEEAQN 179
Query: 187 FENRSVDYIVLNNRHVPAIADPSNA 211
+ N++ + +
Sbjct: 180 YYNQNKEAYRVPAAVHLYRISAEEK 204
>gi|218960640|ref|YP_001740415.1| hypothetical protein; putative signal peptide [Candidatus
Cloacamonas acidaminovorans]
gi|167729297|emb|CAO80208.1| hypothetical protein; putative signal peptide [Candidatus
Cloacamonas acidaminovorans]
Length = 486
Score = 63.7 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 52/495 (10%), Positives = 141/495 (28%), Gaps = 47/495 (9%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K+ +V+ L+W +S ++ V +G ++ + F + +K L + G V
Sbjct: 4 KVQIVLAIC--LLWTMSLISAKPDPNALVGKIGDREYNYKKFNDGFKSYLQYHGK--GKV 59
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW--------GEIARSPLFH 126
+ + + L+ + + L+ DQ I+ ++ + EI + F
Sbjct: 60 LTKQDSIK--LNNQYWEELIGMYVYDQAIKAGKIKVTDAELEAEIKKNIPAEIKQIKDFQ 117
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ KF + L ++E +++ + S ++ ++ + + A
Sbjct: 118 T-NGKFDKAKYEQALKDHPDFKREVMNYSRDLYSYNKLIKTIKNEVKANPDSVKNAWLKE 176
Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
+ S I + + + + ++ + ++E +KD ++ + F + + +
Sbjct: 177 NDYASAKIIHFDYNKLTS-VNATDDEVRAFYEAHKDEFKRENGRSYLLARFPGNLSKAEN 235
Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
+ E F S + I A +
Sbjct: 236 AEQKAQENKILSTALYNRAKEVGLQKAAEEMNIPLEESTYFNSQDQIIPHIGRAPDLVS- 294
Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
G + + G ++ + E
Sbjct: 295 ----------------------FAFNNPVGSIPDIFYAPTGDILVLELKSEIPEYYIDFE 332
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
+KK E+Y + + E + R+ I I+ V +
Sbjct: 333 IKKQEMIIRANRAKRMYTMENYVQNFMQSETPETYLEAAIRDSIAVIEAEKVIADNEIKP 392
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
++ ++ + P + + + + + E+ +
Sbjct: 393 LGKIPSLNTAI--------LNTPEGSFTPLIENEKHWYLALVTKRQYPDLTLWEKDKKKI 444
Query: 487 KKDWKTVKTAEEVSS 501
D + + ++
Sbjct: 445 IADAEAKLQEDHLNQ 459
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 42/431 (9%), Positives = 118/431 (27%), Gaps = 22/431 (5%)
Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
+ L + + Y + I +++ + + +
Sbjct: 48 KSYLQYHGKGKVLTKQDSIKLNNQYWEELIGMYVYDQAIKAGKIKVTDAELEAEIKKNIP 107
Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE----QGKSLSDISLGSFSKEYIPDVSL 325
++Q+ + + + K E S L K +
Sbjct: 108 AEIKQIKDFQTNGKFDKAKYEQALKDHPDFKREVMNYSRDLYSYNKLIKTIKNEVKANPD 167
Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT------- 378
+ L + + I + V+ ++ K + + +
Sbjct: 168 SVKNAWLKENDYASAKIIHFDYNKLTSVNATDDEVRAFYEAHKDEFKRENGRSYLLARFP 227
Query: 379 ----KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
KA ++ + AL E+ ++ +++PL + + + + + I
Sbjct: 228 GNLSKAENAEQKAQENKILSTALYNRAKEVGLQKAAEEMNIPLEESTYFNSQDQIIPHIG 287
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
L+ F S P G + +++K IP E ++ K
Sbjct: 288 RAPDLVSFAFNNPVG-SIPDIFYAPTGDILVLELKSEIPEYYIDFEIKKQEMIIRANRAK 346
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
+ + + + + + + +++ ++ + ++
Sbjct: 347 RMYTMENYVQNFMQS--ETPETYLEAAIRDSIAVIEAEKVIADNEIKPLGKIPSLNTAIL 404
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYL 610
E IEN + + VT + ++K K I+ + +D L+
Sbjct: 405 NTPEGSFTPLIENEKHWYLALVTKRQYPDLTLWEKDKKKIIADAEAKLQEDHLNQWYLEQ 464
Query: 611 KSQYSVTVHDN 621
+ + + +
Sbjct: 465 RQKVQIIDNRK 475
>gi|154253778|ref|YP_001414602.1| SurA domain-containing protein [Parvibaculum lavamentivorans DS-1]
gi|154157728|gb|ABS64945.1| SurA domain [Parvibaculum lavamentivorans DS-1]
Length = 443
Score = 63.7 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/302 (8%), Positives = 74/302 (24%), Gaps = 12/302 (3%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
+ V + + K + G E + ++L +LV
Sbjct: 48 SNTQGIAAVVNDRIISSYDLDQRVKLVMLS----SGIPDTPENISR--IRGQVLRSLVDE 101
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
Q + +E + + R + S D + L G++
Sbjct: 102 YLQQQEAARLNIEVQQEEIDSALQRI----AQRANMSVDQIEAFLKDGGVSRAALEAQIR 157
Query: 157 KMLSRTDVVGMFVGGMRPSN--LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
++ V+ G + + +R E+ Y+V + +
Sbjct: 158 SDIAWNRVIQQQFGPSVTVGDVEIDEVLRRLEEESDQPRYLVSEILITFDSPQHAEEIAG 217
Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
+ + ++ +++ EI E + V
Sbjct: 218 GAQRLVEQIRQGAPFEAVAHQFSQSASAANGGEIGWVHASQLPEGVGSVVAKMQPGMVSD 277
Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
+ ++++ G + ++ + L ++ ++ +
Sbjct: 278 PIRTLNGFYIMQLKAMQTGSGADPMRDQYSLMQVLLPLTPDAEPQAVSRRAREAEEFRRQ 337
Query: 335 KG 336
Sbjct: 338 TN 339
>gi|46397002|sp|Q97E99|PRSA_CLOAB RecName: Full=Foldase protein prsA; Flags: Precursor
gi|325510620|gb|ADZ22256.1| peptidylprolyl isomerase [Clostridium acetobutylicum EA 2018]
Length = 333
Score = 63.7 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/205 (10%), Positives = 67/205 (32%), Gaps = 5/205 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSV-GRQKVPFSSFINSWKQELG 65
K+++ + + + + + + S V ++ G Q + K +
Sbjct: 2 KSAKQIATALLVGMFTFSAVGCSMVEKRPEAINSKVVATIYGNQTITRGEIDKLAKGTVE 61
Query: 66 MISQKIGFVVNSERARSVGLD---KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+ + G L ++IL +L+ + +D + + +
Sbjct: 62 QLKSQYGDSYEKNEEAVAALKKQKEQILTSLIDQKIFLKKAKDQKITLTKDEIKTNVDDV 121
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
+ ++ K + F S+L++ G E+ D ++ V ++ S+ +
Sbjct: 122 YAQYQQEFK-TESEFKSQLSQYGYTVAEFKDQLKNRAISNKLIQQVVKDVKVSDDEAKKY 180
Query: 183 KRFYFENRSVDYIVLNNRHVPAIAD 207
+ + + ++ H+ +
Sbjct: 181 YDSHKNSYTQSPNTVHLAHILVKTE 205
Score = 37.5 bits (84), Expect = 6.8, Method: Composition-based stats.
Identities = 29/281 (10%), Positives = 74/281 (26%), Gaps = 20/281 (7%)
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ ++ K+ I + K K +D K + T++D++ +
Sbjct: 66 QYGDSYEKNEEAVAALKKQKEQILTSLIDQKIFLKKAKDQKITLTKDEIKTNVDDVYAQY 125
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ + + Y
Sbjct: 126 QQEFKTESEFKSQLSQYGYTVAEFKDQLKNRAISNKLIQQVVKDVKVSDDEAKKYY---- 181
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+ + V KT K A+ V ++ ++ G++F + K +
Sbjct: 182 DSHKNSYTQSPNTVH-LAHILVKTEKEAKAVKARIDK--------GEDFATVAKQVSTDG 232
Query: 529 LTTNQ--INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
+ + + + ++ V P+ + V K PV++
Sbjct: 233 SKEKGGDLGDIQENDSNYDKTFMAAALKLNDNQV-SAPVHTQFGWHVIKCIKKTEYPVKD 291
Query: 587 ----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
KD + K + + +SQ ++ ++ +
Sbjct: 292 FNSVKDDIKQTVLSTKQKSVYQKTLKKWESQANIDKNEKNL 332
>gi|313498575|gb|ADR59941.1| SurA domain-containing protein [Pseudomonas putida BIRD-1]
Length = 213
Score = 63.7 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 7/124 (5%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V ++ + + L + + + N + L + LD L+ L Q
Sbjct: 21 PAARVNGVEIGLMRLERYFSEYLDAQGRAVTSIRNPGLYKR--LRDQALDELIDKELLWQ 78
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G+ +V ++ G S +F RLA G + +Y ++ ++
Sbjct: 79 EAQRQGIAVSDEQVSAQVGEIEAAFG-----SPALFERRLAEAGFDRAQYTEYTRHEMAA 133
Query: 162 TDVV 165
V
Sbjct: 134 QQVY 137
>gi|319948816|ref|ZP_08022932.1| SurA domain-containing protein [Dietzia cinnamea P4]
gi|319437523|gb|EFV92527.1| SurA domain-containing protein [Dietzia cinnamea P4]
Length = 246
Score = 63.7 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/167 (13%), Positives = 56/167 (33%), Gaps = 6/167 (3%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V V ++ F++ ++ + +S + ++ + L + D L+ L
Sbjct: 50 DPVAEVNGTEISRDEFLSVFENQYQQMSMQA--QMSGQPVDEAQLKELTTDGLIGTELLT 107
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q G+E + E+ + N+ S D FV + +G++ +D K L
Sbjct: 108 QEAGTRGIEVSDEEIQAEL----AVFAERNQVSTDEFVEAMGGQGLDRAAVLDQIDKQLR 163
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
++ G + + A + +++ +
Sbjct: 164 VQKLITDEYGEFEVTEAEVQAAYEQVAQQQAMSGGGEAGGGGLPPLE 210
>gi|83648743|ref|YP_437178.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
2396]
gi|122070647|sp|Q2S9C1|SURA_HAHCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|83636786|gb|ABC32753.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
2396]
Length = 434
Score = 63.7 bits (152), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 9/133 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V +S + + + Q+ + E L +K+LD LV +
Sbjct: 35 DRVVAVVNDDIVLYSELQDRASRIKDKLRQQ-KTPLPPEAV----LHEKVLDQLVLESIQ 89
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G+ ++ + K N + D F L+ EG+ + + + +
Sbjct: 90 MQMADRGGIRVSDSQLNQTMQNI----AKQNGMTLDQFQQALSEEGVTYQSAREQIRREM 145
Query: 160 SRTDVVGMFVGGM 172
+ V V
Sbjct: 146 IISRVQQRSVDSR 158
>gi|104779703|ref|YP_606201.1| peptidyl-prolyl cis-trans isomerase A [Pseudomonas entomophila L48]
gi|95108690|emb|CAK13384.1| putative peptidyl-prolyl cis-trans isomerase A [Pseudomonas
entomophila L48]
Length = 439
Score = 63.7 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S + I+++ G V + L++++L+ L+
Sbjct: 31 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGGVPP-----AGALEQQVLERLIVENLQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + + + N S + F + LA +G++ + + + +
Sbjct: 86 LQIGERSGIRITDEELNQAVGTI----AQRNGMSLEQFRAALAHDGLSYDDAREQIKREM 141
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 142 IISRVRQRRVA 152
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 16/201 (7%), Positives = 61/201 (30%), Gaps = 5/201 (2%)
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
++ + +P+G + ++ +EV
Sbjct: 238 WRKAGQLPPDFAKMLSSMATGDVTQPIRIPNGFIILKLEEKRGGESSVLRDEVHVRHILI 297
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ +++ + + + + + K G++F ++ K+ + ++ + +
Sbjct: 298 KPSEIRSDKATEQLAERLYDRIKNGEDFSELAKSFSEDPGSALNGGDLNWVDPNSLVPEF 357
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDS 605
Q+ + V P + V +V + + + ++ L + L +
Sbjct: 358 REQMANAQQGEV-TRPFRTQYGWHVLEVMGRRATDSTAQAREQQAMNVLRNRKYDEELQT 416
Query: 606 VIAYLKSQYSVTVHDNLIQRY 626
+ ++ + V + +
Sbjct: 417 WLRQIRDEAYVEIKLPGADQA 437
>gi|119775949|ref|YP_928689.1| survival protein surA [Shewanella amazonensis SB2B]
gi|119768449|gb|ABM01020.1| survival protein surA [Shewanella amazonensis SB2B]
Length = 434
Score = 63.7 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 12/156 (7%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K+ L + G V V V S N G
Sbjct: 6 KLIFAALAMTM---GFQSLAAPQPLDRVAVQVNDGIVLESEIQNMMDTVKKNALA-AGQT 61
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ S+ A L ++++ L+ Q E +GL ++ I K +
Sbjct: 62 LPSDDA----LRTQVIERLILTRLQLQMAERVGLHIGDLQLDQAIENIAREQ----KMTV 113
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ EG++ +Y + + ++ ++ + V
Sbjct: 114 AQMQQAIQAEGMSFAQYREQLREEITLGEIQRIQVQ 149
>gi|313888122|ref|ZP_07821796.1| putative foldase protein PrsA [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845812|gb|EFR33199.1| putative foldase protein PrsA [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 362
Score = 63.7 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 28/274 (10%), Positives = 80/274 (29%), Gaps = 11/274 (4%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV-- 75
+ V + G S S + VG ++P + F S+ + ++ G V
Sbjct: 6 FGKIAVTIALAG-SLVACSGANKDAAAKVGGVEIPMADFYKSYAARVNQLTSMYGEDVLK 64
Query: 76 ---NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ +++ L ++ + +L + L Q E + V ++ G + F
Sbjct: 65 NKEDGKKSTDELLREQAITDLTTTEALKQDAEKSKITVSDEEVNKKLDEIKAQLGGEEAF 124
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ L G+ ++ ++ + + + P+ + + ++
Sbjct: 125 NK-----FLKENGLPKEYVAENMKNQMLVGKYTQEKLKELEPTEEEVKKQYEDNKDSYYK 179
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
A+ + + + K + + + E + +
Sbjct: 180 AKASHILVDDLKEANVLRKKILKGEDFAKLAKENSKDTGSAQNGGSLGEFTSGQMVEAFD 239
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
+ K + + ++ K+ E
Sbjct: 240 KEIAKMKVGDISEPITTQFGYHIIKLEDKKPLEF 273
>gi|299136355|ref|ZP_07029539.1| SurA domain protein [Acidobacterium sp. MP5ACTX8]
gi|298602479|gb|EFI58633.1| SurA domain protein [Acidobacterium sp. MP5ACTX8]
Length = 350
Score = 63.7 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/179 (15%), Positives = 58/179 (32%), Gaps = 13/179 (7%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
V +V + + ++ +L Q+ + ++ L IL L+
Sbjct: 25 GPQDGVVGTVNGHPILRTEVDKAYNAQLASNPQQTAPSAD----QADSLRLNILHELIVE 80
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
++Q L A V ++A ++ + F +RL + E
Sbjct: 81 EIVEQRAAKQNLIATDSEVDAKLAEMKA------PYTEEQFQARLKTANLTLDELRRDIR 134
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ L++T + + + D YF + ++ NR+ A +N Q
Sbjct: 135 RNLTQTKLFNKEIDSKI---TVTDGDVNNYFNAHKDSFNLIENRYHLAQILVTNQPAQQ 190
Score = 44.1 bits (101), Expect = 0.083, Method: Composition-based stats.
Identities = 24/275 (8%), Positives = 73/275 (26%), Gaps = 17/275 (6%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ ++ + + I ++ +A+++ + + + L
Sbjct: 65 QADSLRLNILHELIVEEIVEQRAAKQNLIATDSEVDAKLAEMKAPYTEEQFQARLKTANL 124
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ + + + + D ++ S+ ++ + +
Sbjct: 125 TLDELRRDIRRNLTQTKLFNKEIDSKITVTDG-DVNNYFNAHKDSFNLIENRYHLAQILV 183
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT---NQI 534
+ T +E K L G +F I N + T +
Sbjct: 184 TNQPAQQSSNLQNSKATTDDEARKKIQALKNRLDT-GDDFGTIASNFSENQDTAPNGGDV 242
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVK-CFPIENGL-----SYVVFKVTNSKVG------ 582
+ + + + P+ +G Y ++K+ + +
Sbjct: 243 GFVPESQMKADPTAYAAIMKLKAGQITDILPVLDGTTHKVAGYSIYKLISKEPAGQRDLN 302
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L + ++ L S + L+ Q V
Sbjct: 303 DPRVQQNIRQQLHESRSQLLKASYLEMLRDQAKVE 337
>gi|149924928|ref|ZP_01913258.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1]
gi|149814196|gb|EDM73809.1| peptidylprolyl cis-trans isomerase [Plesiocystis pacifica SIR-1]
Length = 397
Score = 63.7 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 37/371 (9%), Positives = 105/371 (28%), Gaps = 52/371 (14%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ +VG + +P + F+ ++ E + ++ + +++ +KI+D L+ +
Sbjct: 72 EVLATVGDRSIPKADFLARYEPEATKLLERRDDGKVPDAYQAMQ-REKIIDALIWSELMA 130
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
E G++ ++ E + + + L R G + L
Sbjct: 131 LEAERSGVDVSPEKLAEEEGKQKA--------HVADWNAWLERIGQTPEIRQAMTRDYLR 182
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
++ + + L +++
Sbjct: 183 ERALI----------------------------------EARKGPIEATEEELRAAYDES 208
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
+ + + + K++ + + E
Sbjct: 209 ----IKAGRLTAPQPMARASHFLITYGPREGDEKIQPVPFKQREETDQAVKDEWKAKAKA 264
Query: 281 KEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
+ + + G F + E + +G F + + + + G
Sbjct: 265 RAEALRELAQQPGVDFNEFCREYSEGPGAYRGGDMGLFPQTQMIKAYADVA--FSLEIGV 322
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
+ + GY + V + + F+ V+ D+ Q+ K + K LEE +
Sbjct: 323 LSEPVESDKGYYVIKVFGRYEAGDLPFEAVRADLVRQVEGQKLQMGREALRKELEERFTV 382
Query: 398 GTSMDEISRRE 408
++ + ++
Sbjct: 383 VSAPLDDAKAF 393
>gi|197124850|ref|YP_002136801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
K]
gi|196174699|gb|ACG75672.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
K]
Length = 317
Score = 63.7 bits (152), Expect = 9e-08, Method: Composition-based stats.
Identities = 37/208 (17%), Positives = 65/208 (31%), Gaps = 20/208 (9%)
Query: 20 VLFVPFLIWGLSDALFSVSGSST----VVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+L L G + SG V V + + + + +
Sbjct: 8 ILIATALAAGCGRCGAARSGERPAPGAVAVVNGEPIAPDAVARELRDAQAGAEGQG---- 63
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+A L +++LD+LV A L Q + +V F ++
Sbjct: 64 ---QATGDVLRRRVLDDLVDRALLLQQARARSIVVGQDQVER------AFLRLRAEYPGT 114
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
F LA+E +++ E L+ + V P ++D Y+ ++
Sbjct: 115 HFDDLLAQERLSQAELKARLKDQLTVERLFEQEV---FPQVQVVDAEVERYYAEHGAEFQ 171
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDN 223
HV I S TQ EK + N
Sbjct: 172 EPERVHVLQIVVASREEATQVREKLRRN 199
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/209 (10%), Positives = 58/209 (27%), Gaps = 6/209 (2%)
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM-WVQIKESIPARDRKLEE 481
+ ++ L + K + L + VQ+ ++ R
Sbjct: 108 RAEYPGTHFDDLLAQERLSQAELKARLKDQLTVERLFEQEVFPQVQVVDAEVERYYAEHG 167
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
+ ++ +A Q+ + + + F ++ + + + +
Sbjct: 168 AEFQEPERVHVLQIVVASREEATQVREKLRRNPQTFAEVARRSSIAPEGKSGGDLGLIGR 227
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQM 597
+ FS PV V + + +FKV K Q + + L +
Sbjct: 228 GAGFPEVFDTCFSLPVN-VISDVTPSPYGFHLFKVVEKKPAQRRTLEQARAEIAEKLGRE 286
Query: 598 MNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ L+ + + + + +
Sbjct: 287 KRAGAQAEYLEALRKRAQIDIDEKALAAV 315
>gi|107099580|ref|ZP_01363498.1| hypothetical protein PaerPA_01000593 [Pseudomonas aeruginosa PACS2]
gi|313111760|ref|ZP_07797553.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
39016]
gi|310884055|gb|EFQ42649.1| peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa
39016]
Length = 404
Score = 63.7 bits (152), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S ++ + ++ G + E L +++L+ L+
Sbjct: 5 DRVVAIVDNDVIMQSQLDQRLREVHQTLLKR-GAPLPPEHV----LTQQVLERLIIENIQ 59
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G+ + + + N S + F + L R+G++ + + + +
Sbjct: 60 QQIGDRSGIRISDEELNQAMGTI----AQRNGMSLEQFQAALTRDGLSYADAREQVRREM 115
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 116 VISRVRQRRVA 126
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 4/194 (2%)
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
Q + G V P G ++ ++++E +EV
Sbjct: 212 WRKAAQLPQPFDSMIGSLAVGDVTEPVRTP-GGFIILKLEEKRGGSKMVRDEVHVRHILL 270
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +E + K Q + E + G++F ++ K+ + ++ +
Sbjct: 271 KPSEIRSEAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDPEALVPEF 330
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSV 606
QV + + P + + + +V + EK + +S L + L +
Sbjct: 331 RQVMNDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKYDEELQAW 390
Query: 607 IAYLKSQYSVTVHD 620
+ ++ + V +
Sbjct: 391 LRQIRDEAYVEIKQ 404
>gi|262198048|ref|YP_003269257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
DSM 14365]
gi|262081395|gb|ACY17364.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliangium ochraceum
DSM 14365]
Length = 342
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/235 (8%), Positives = 65/235 (27%), Gaps = 6/235 (2%)
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
+ E + + ++ + + + + + + + +
Sbjct: 81 RARYTSTEQKKEFLDTLVSFEVMAAEAQRRGFDKDPEVVRTLKQVMIQKLVKEQFTDELK 140
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
+ E R + + +A+++ S+A + +
Sbjct: 141 PEDIPEEELRAYFDEHKEEYQRPDQVRAAAIV--LDDKASADKLLSEAKAAAEKNHVAFR 198
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
N G S + + D + I F+ V + + K
Sbjct: 199 NLVTAHSKDGDSKNSGGDLGFFDKSSSDVPAPVIEAAFALDSNQVSDVIDAGNGRFYIIK 258
Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVTVHDNLIQRY 626
+T + + D L + +D + + +A LK + ++ ++ + +
Sbjct: 259 ITGRRKAMSKSFDDVKRQLLNRVYRDKRVKMQEDFVAALKEKATINYNEENLSKV 313
Score = 46.8 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 36/119 (30%), Gaps = 10/119 (8%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ + +V + + F + ++ + + S K+ LD LVS +
Sbjct: 53 DAPLATVNDEVITVGDFQSQINRQAPYVRARY---------TSTEQKKEFLDTLVSFEVM 103
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ G + V + + + +F+ ++ + E +
Sbjct: 104 AAEAQRRGFD-KDPEVVRTLKQVMIQKLVKEQFTDELKPEDIPEEELRAYFDEHKEEYQ 161
>gi|146309025|ref|YP_001189490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
mendocina ymp]
gi|145577226|gb|ABP86758.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
mendocina ymp]
Length = 430
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 68/480 (14%), Positives = 135/480 (28%), Gaps = 85/480 (17%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S ++ I ++ G + E L +++L+ L+
Sbjct: 31 DRVVAIVDNDVVMQSQLDARLREVQQTIDKR-GGALPPEHV----LSQQVLERLIIENIQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + + + N S + F LAR+G++ + D + +
Sbjct: 86 LQIGERSGIRITDEELNQAMGTI----AQRNGMSLEQFRQALARDGLSYADARDQVRREM 141
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ V V ++ + +
Sbjct: 142 IISRVRQRRVA---------------------------------ERIQVTDQEVQNFLAS 168
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ E R++ IL V E S+ E+QA + +E Y
Sbjct: 169 DLGKMQLSEEFRLANILIPVSEGA-----SSSEIQAADRQARELYQQL------------ 211
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
++G F QLA + +L +G +P DS+ S G
Sbjct: 212 -----------QQGADFAQLAISRSASETALEGGEMGWRKAGQLPPP--FDSMISQLNPG 258
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT-KASEKVKEDYKRLEEFL 395
+ T + G++I + + T EV ++ E+ + +RL + +
Sbjct: 259 EVTEPVRTPGGFIILKLIEKRGGDTQVRDEVHVRHILIKPSEIRSPEETRRLVERLYQRI 318
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
G E+++ + +V +
Sbjct: 319 VAGEDFAELAKSFSEDPGSA-------LNGGDLNWIDPNALVPEFRQVMSETASGELSKP 371
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
G ++ Q+ + + K EE+ + Q+ E E K
Sbjct: 372 FQTQFGWHVL-QVMGRRATD-SSAQFREQQAANLLRNRKYDEELQAWLRQIRDEAYVETK 429
>gi|298504157|gb|ADI82880.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
[Geobacter sulfurreducens KN400]
Length = 313
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 51/169 (30%), Gaps = 7/169 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
VQ+ + + + K A ++V E K G NF ++ K
Sbjct: 129 VQVSDEELKKFYDQNKDKFKSGAQIKASHILVRDEKLAQEIVKEL-KGGANFEELAKKHS 187
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + F + Y + KVT + +
Sbjct: 188 IDSAAAKGGDLGWFSKGNMVPEFEKVAFGLKEGETSGI-VRTQFGYHIIKVTGKRPAGER 246
Query: 586 EKDKFISYLTQM----MNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
++ + +++ + +K ++++ ++++ + L G+
Sbjct: 247 TFEEVKDQIKAAVLPGKQQEVFQKLKEDIKKGATISIKEDVL-KGLGGQ 294
Score = 46.0 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 30/117 (25%), Gaps = 20/117 (17%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVV----------SVGRQKVPFSSFINSWKQELGM 66
+ +L V + L +T V + +F +
Sbjct: 6 IVTILSVSLCLAALGGCKGKTESGTTAAPAKKAGQVLVEVNGDAITVENFNKELEGL--- 62
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
A + K++LD +V L Q + G++ + +
Sbjct: 63 ------PPYLKPMADTPEGKKELLDTMVVRELLYQQAKKDGVDKS-AEIADRVEELK 112
>gi|39995127|ref|NP_951078.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Geobacter sulfurreducens PCA]
gi|39981889|gb|AAR33351.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
Length = 313
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 51/169 (30%), Gaps = 7/169 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
VQ+ + + + K A ++V E K G NF ++ K
Sbjct: 129 VQVSDEELKKFYDQNKDKFKSGAQIKASHILVRDEKLAQEIVKEL-KGGANFEELAKKHS 187
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + F + Y + KVT + +
Sbjct: 188 IDSAAAKGGDLGWFSKGNMVPEFEKVAFGLKEGETSGI-VRTQFGYHIIKVTGKRPAGER 246
Query: 586 EKDKFISYLTQM----MNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
++ + +++ + +K ++++ ++++ + L G+
Sbjct: 247 TFEEVKDQIKAAVLPGKQQEVFQKLKEDIKKGATISIKEDVL-KGLGGQ 294
Score = 46.0 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 30/117 (25%), Gaps = 20/117 (17%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVV----------SVGRQKVPFSSFINSWKQELGM 66
+ +L V + L +T V + +F +
Sbjct: 6 IVTILSVSLCLAALGGCKGKTESGTTAAPAKKAGQVLVEVNGDAITVENFNKELEGL--- 62
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
A + K++LD +V L Q + G++ + +
Sbjct: 63 ------PPYLKPMADTPEGKKELLDTMVVRELLYQQAKKDGVDKS-AEIADRVEELK 112
>gi|294497317|ref|YP_003561017.1| putative lipoprotein [Bacillus megaterium QM B1551]
gi|294347254|gb|ADE67583.1| putative lipoprotein [Bacillus megaterium QM B1551]
Length = 264
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/167 (14%), Positives = 51/167 (30%), Gaps = 2/167 (1%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
TV V +KV + + Q + E A+ + ++ +DNLV L
Sbjct: 68 KKTVAVVNGKKVSGEEYNAALSSSQAQYQQMGQDPTSKEAAK--QVKQQTIDNLVGQTLL 125
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E+ G +A V ++ + D +F + + L + + + +
Sbjct: 126 LQEAENKGYKATDEEVNKKLKETKKQFKTDKQFKAALKDAGLTQSQLKSELADSIKYQQY 185
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
D+ V + AK+ + +
Sbjct: 186 VDKDIQTPEVTDKEIQDYYDQFAKQSQSQASGGKEQSQMPKLEDVKP 232
>gi|302383690|ref|YP_003819513.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas
subvibrioides ATCC 15264]
gi|302194318|gb|ADL01890.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas
subvibrioides ATCC 15264]
Length = 450
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 11/135 (8%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V +V Q + + M + + ++ L L+
Sbjct: 61 ADGIVATVNDQVITGFDLRQRMLTTIAMSQVQ------PTEENIPAIQQQALQGLIEERL 114
Query: 99 LDQFIEDIG-LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
I L+ V EIAR ++ + +V L GI + +
Sbjct: 115 QAAEIAKFETLKITDAEVDEEIARM----AEEAGTTPQAYVEFLTSGGIRAENLREQLRT 170
Query: 158 MLSRTDVVGMFVGGM 172
+ ++VG
Sbjct: 171 EIGWRELVGGRFNSR 185
>gi|225180894|ref|ZP_03734342.1| SurA domain protein [Dethiobacter alkaliphilus AHT 1]
gi|225168375|gb|EEG77178.1| SurA domain protein [Dethiobacter alkaliphilus AHT 1]
Length = 241
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/219 (11%), Positives = 74/219 (33%), Gaps = 12/219 (5%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWG-----LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
++ + + + + + G +D G+ + +V + + F
Sbjct: 5 KTKKVFFTLLVFSVLISLVALGGCSEQATDGNEETDGNKAIATVNGVGITYDDFSAQL-L 63
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
E ++Q G + ++ L+ + ++ L++ L Q E+ ++ + +I +
Sbjct: 64 EFEQLAQMQGMSLEDPETVTI-LENQAVEVLINEQLLLQEAENKDIQISQSEIDEQIDQM 122
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
D +F LA +G+ +E D + + V V + S +
Sbjct: 123 KSGFEDDGQFEEA-----LAAQGVEIEELADLIREDMLIQAVFAETVPNISVSEDEITDE 177
Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ ++ +P + + V+ ++ +
Sbjct: 178 EINEVYDQQQQMAEAQGMDLPPLEELEAEVVAFIIQQMQ 216
>gi|170764243|ref|ZP_02639032.2| foldase protein PrsA [Clostridium perfringens CPE str. F4969]
gi|170714999|gb|EDT27181.1| foldase protein PrsA [Clostridium perfringens CPE str. F4969]
Length = 325
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 53/172 (30%), Gaps = 6/172 (3%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNLVS 95
+TV +V +K+ + K + + G + + + ++ ++ LV+
Sbjct: 18 DKTTVATVNGEKITLGEVDSHLKGVFAQMKSQYGDKYMDDPQVAQQILQQRQSVVQGLVT 77
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
L + +G++ + ++ K D F L EG E + +
Sbjct: 78 DKVLGIEADKLGIKPSEEEIKKKVDEQ---FENIKKGMGDNFDKALEAEGYTEDTFKEFL 134
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ V ++ S+ + + + V + +
Sbjct: 135 KNQVIAEATVEYATKDVKVSDEDIKKYYDENKQQFVVKAGADVKHLLFPTEE 186
>gi|295702690|ref|YP_003595765.1| putative lipoprotein [Bacillus megaterium DSM 319]
gi|294800349|gb|ADF37415.1| putative lipoprotein [Bacillus megaterium DSM 319]
Length = 264
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 2/169 (1%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
TV V +KV + + Q + E A+ + ++ +DNLV
Sbjct: 66 DDKKTVAVVNGKKVSGEEYNAALSSSQAQYQQMGQDPTSKEAAK--QVKQQTIDNLVGQT 123
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
L Q E+ G +A V ++ + D +F + + L + + + +
Sbjct: 124 LLLQEAENKGYKATDEEVNKKLKETKKQFKTDKQFKAALKDAGLTQSQLKSELADSIKYQ 183
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
D+ V + AK+ + +
Sbjct: 184 QYVDKDIQTPEVTDKEIQDYYDQFAKQSQSQASGGKEQSQMPKLEDVKP 232
>gi|297622266|ref|YP_003703700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
radiovictrix DSM 17093]
gi|297163446|gb|ADI13157.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Truepera
radiovictrix DSM 17093]
Length = 398
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKK 88
++ + + V+ +G ++V F + L ++ + G ++ G L
Sbjct: 54 MTSGAAAEDPDAVVLELGGERVSAGDFEGRFNIALRNLAAQQGIPLDPVTLAQFGTLKPA 113
Query: 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
L+ + L Q E GL V E+ ++ G++ +
Sbjct: 114 FLEQFATERALLQEAEARGLAPADEAVEAELEQARAAAGENYE 156
>gi|327312552|ref|YP_004327989.1| putative phage tail component, N-terminal domain-containing protein
[Prevotella denticola F0289]
gi|326944288|gb|AEA20173.1| putative phage tail component, N-terminal domain protein
[Prevotella denticola F0289]
Length = 474
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 57/423 (13%), Positives = 116/423 (27%), Gaps = 43/423 (10%)
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK--EKYFSPE 268
L + +++ E K + ++ A
Sbjct: 79 DTLPAFRKEFLGYRNQQIRPAFITDADVEDEARKIYRDTKQQIDANGGLWHCAHILIGMG 138
Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
T ++ ++ AD + +L+KG F LA+ + L K +
Sbjct: 139 QHTSKEEEAAARQLADSIYTALQKGADFADLAKRYSTDTSSAKNGGDLPRLQKGQTV--A 196
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ K G+ + + FG+ I + + ++ DI + + +++
Sbjct: 197 EFEKAMLTLKPGETSRPVLSPFGFHIIRMIGH--ESLPPYDSLRSDIMQYIEMRGLRDQI 254
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
E K+ ++ D + Y + LL
Sbjct: 255 INQRLDSLVQAGGKDITQEQILDRKLAELEEKDADL--------KRLIREYHDGLLMVEM 306
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
K +Y K+ A R A V KA+
Sbjct: 307 SNRTVWDKVAKDETALEAYFRKHRKQYKWAEPRFKG--------------IAYHVKKKAD 352
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF----GYDGISQVFSGPVEMV 560
++ +G F + L + I R+ E F +VF +
Sbjct: 353 VDAVKECVKGLPFSKWAERLRNTFNKDGNI-RIRVEKGIFRKGDNALIDREVFGQKATVA 411
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
Y + V K+ +E D + ++L S +A L+ +Y V +
Sbjct: 412 PV------EGYPIDAVFGKKIKAPEELDDVRDLVISNCQEELEKSWVAALRRKYKVVIDK 465
Query: 621 NLI 623
++
Sbjct: 466 AVL 468
>gi|254522723|ref|ZP_05134778.1| chaperone SurA [Stenotrophomonas sp. SKA14]
gi|219720314|gb|EED38839.1| chaperone SurA [Stenotrophomonas sp. SKA14]
Length = 447
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/172 (10%), Positives = 44/172 (25%), Gaps = 9/172 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + S + + + + E L +++L+ LV
Sbjct: 33 DRIAAVVDEDVILQSELQRAIANIKAQYAGRENQ-LPPEDV----LSRQVLERLVLVKLQ 87
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ G+ + + +G D RLA +GI+ ++ +
Sbjct: 88 VARAQSSGIRVGDQELNQAMNAIAQQNGSTL----DALRQRLAHDGIDFNDFRASVRDEI 143
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ + F + A Y + + ++
Sbjct: 144 TVQRLRQSFAQSRISVSEGEVDAALKQQATVGNQYHLAHILVALPDGANADQ 195
>gi|114569774|ref|YP_756454.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
MCS10]
gi|114340236|gb|ABI65516.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
MCS10]
Length = 435
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/258 (8%), Positives = 65/258 (25%), Gaps = 14/258 (5%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+V+ + F+ + + + V + + N + +
Sbjct: 20 IVLSLLAFVAPMCATNAHAQTTEGVAALVNDEPITTVDVRNRMRLIIASTGMSQ-----I 74
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+ + + + LV Q + +E + + + DV
Sbjct: 75 DEGTLSRIQDQAMRGLVDEHLQLQAASEYDIEVSDAEITNSLLDLADRNNTTI----DVI 130
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL-----DQAKRFYFENRSV 192
+ L G++ ++ +V G + ++ + +
Sbjct: 131 IQDLQSSGVDVSTLRHQLEAEIAWQIIVNGRYGSRIRISEQQIELALERLAASASQPQFR 190
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ +L P + + + + + PE R I+ +
Sbjct: 191 IFEMLFEVPGPGQEEQTIQRVITVMNQLQQGATFPELARQFSDAPSAANGGDIGWITASQ 250
Query: 253 LQAEYEKNKEKYFSPEIR 270
LQ E + +
Sbjct: 251 LQPEVAAIMPQMRGQYDQ 268
>gi|325276043|ref|ZP_08141858.1| SurA domain-containing protein [Pseudomonas sp. TJI-51]
gi|324098828|gb|EGB96859.1| SurA domain-containing protein [Pseudomonas sp. TJI-51]
Length = 428
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S + I+++ G V + L++++L+ L+
Sbjct: 20 DRVVAIVDNDVVMQSQLDQRVHEVQQTIAKRGGSVPP-----AGALEQQVLERLIVENLQ 74
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E G+ + I + N S D F + LA +G++ + D + +
Sbjct: 75 LQIGERSGIRITDEELNQAIGTI----AQRNGMSLDQFRAALAHDGLSFDDARDQVKREM 130
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 131 IISRVRQRRVA 141
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/309 (8%), Positives = 83/309 (26%), Gaps = 8/309 (2%)
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
D+ + ++ + V I +F S +
Sbjct: 119 FDDARDQVKREMIISRVRQRRVAERIQVSEQEVKNFLNSDMGKMQMSEEYRLANILIPTP 178
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLP---LVDFAGKDVKGKEVAAIPYKEQLLF 441
+ + A ++ L +
Sbjct: 179 EAANSADIQKAARQVGEVYQQLKQGADFGQLAIARSASENALEGGEMGWRKAAQLPPDFA 238
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
++ + +P+G + ++ + + +EV + ++ +
Sbjct: 239 KMLSSMPVGEITQPIRIPNGFIILKLEEKRGGSENVLRDEVHVRHILIKPSEIRSDAATE 298
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMV 560
+ + + E K G++F ++ K+ + ++ + + Q+ + V
Sbjct: 299 QLAERLYERIKNGEDFAELAKSYSEDPGSALNGGDLNWVDPNSLVPEFREQMANAQQG-V 357
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P + + V +V + E+ + ++ L + L + + ++ + V
Sbjct: 358 VTKPFKTQYGWHVLEVLGRRATDSTEQAREQQALNVLRNRKYDEELQTWLRQIRDEAYVE 417
Query: 618 VHDNLIQRY 626
+ +
Sbjct: 418 IKLPGADQA 426
>gi|323488673|ref|ZP_08093915.1| SurA domain-containing protein [Planococcus donghaensis MPA1U2]
gi|323397691|gb|EGA90495.1| SurA domain-containing protein [Planococcus donghaensis MPA1U2]
Length = 253
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/171 (12%), Positives = 56/171 (32%), Gaps = 5/171 (2%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V V +++ F + + + ++ + ++ + L +++ D+LV+ L
Sbjct: 61 EVVAEVNGEEITKEDFESIYTGQFEQMAMQ--SQLSGQEVDQSQLKEQVADSLVAQELLV 118
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q E L A + + ++ S D ++ L +GI+E+E + +
Sbjct: 119 QETEKQKLTASEEQTNTALEELAQ---QNGLTSSDELLAALKEQGISEEEVMKQIETQVK 175
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
++ G ++ ++ L +
Sbjct: 176 IEQLIAAETGEIKLTDEELQTYYDEAKAQQEEAGGEEIPAFEDVKPQIEEQ 226
>gi|156741601|ref|YP_001431730.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus
castenholzii DSM 13941]
gi|156232929|gb|ABU57712.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus
castenholzii DSM 13941]
Length = 337
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 10/106 (9%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
I V++ + G TV V + + + Q+ G
Sbjct: 7 IAAVLVVLSLAACGAGS--------QTVARVDNVTLTRQELDQRIDRIEKGLQQQAGTGF 58
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ ++++++ + G+ V +I R
Sbjct: 59 P--LPSRLDIEQELVSQFIDQQLTLGLARQRGITVSDADVNEQIER 102
>gi|282856786|ref|ZP_06266047.1| hypothetical protein HMPREF7215_0584 [Pyramidobacter piscolens
W5455]
gi|282585409|gb|EFB90716.1| hypothetical protein HMPREF7215_0584 [Pyramidobacter piscolens
W5455]
Length = 368
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/227 (11%), Positives = 76/227 (33%), Gaps = 15/227 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIW----GLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
L +R + W+ +F+V+ G SD+ +G V V +++ S
Sbjct: 4 LTALRTQIK-WILALFIVIFTASVGFMYGTGGSSDSDNQRTGDFVVAKVNGEELRISQLQ 62
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + + + + + K + D +VS + + + + A V
Sbjct: 63 EHLRSFVER-----NGIRDLSDKQMPLIYKAVFDEMVSNRAVIDEVARLKISAPADDVDR 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++ ++ + + F+ L +G + ++ + L+ ++ GG+ S+
Sbjct: 118 QLKEV-----ENQYVTKEAFMQTLKNQGSSLEQVKAEIARQLAINKMLEDVSGGVVVSDD 172
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ N ++ + + + ++ + +
Sbjct: 173 EIKTLYDALRGNFTLPAGIEADFVQLKSKEAADKFAEEVKADKDWDK 219
>gi|87310456|ref|ZP_01092586.1| hypothetical protein DSM3645_30196 [Blastopirellula marina DSM
3645]
gi|87286955|gb|EAQ78859.1| hypothetical protein DSM3645_30196 [Blastopirellula marina DSM
3645]
Length = 838
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 69/573 (12%), Positives = 144/573 (25%), Gaps = 60/573 (10%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-----SGSSTVVSVGRQKVPFSSF 56
RK + +A +F V+L + F + G+ F + VV + Q +
Sbjct: 8 FHFFRKNQKALLA-VFGVLLMIVFTVGGVVSQFFPQRAAYEAADKVVVKIDGQPLTKPEI 66
Query: 57 INSWK----------QELGMISQKIGFVVNSERARSV--------------GLDKKILDN 92
+ + + GF + + ++I
Sbjct: 67 DRLSQDATLVSLVTGMAMARTQEAGGFPNPPAPPIAGLRYQPPSGPNSPGGAMREEISTQ 126
Query: 93 L-VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG------ 145
+ +S E +G+ V + S + L +
Sbjct: 127 VVISDHLFSLEGERLGVAISDDMVREFMTSV-----TGGVISDVQYAELLNQAQGADGRV 181
Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
++ + +L + + G + R V +N A
Sbjct: 182 TYDQMFEMFRRTLLVQKTKRLLLEGISTATPASAWINYRNLNRTLDVQLYPVNTADYLAK 241
Query: 206 AD--PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
P+ A L + F +Y+D R P ++ D L+AE K ++
Sbjct: 242 VTKKPTEAELKKLFNQYRDQIRNPLTGEPGFLQLDKAAVGFVKADYEKFLEAELAKITDE 301
Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
+ + + +K + G + A E+ + ++
Sbjct: 302 QVAADYEKNK--DSSYRKPVADPAAETPLGVPATEPAMEEQPAATEPMTTEPMTTEPMST 359
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ + K + P + A + + + A + +A +
Sbjct: 360 EPMKTEPAAEKPAEDKPAAEPAKMEEPAKEAPAEEKTMTETPPATEKSAEEKPAPEAPAE 419
Query: 384 VKEDYKRLEEFLALGTSMDEISR--------REKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
K ++ + + K AA P
Sbjct: 420 EKPADEKPAAEESSLLGRGSEVMLVAFQEEGEKPAEDKPSEEKPATEKPADDAAPAAEPM 479
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
KE ++ D T + E P R LEEV +K
Sbjct: 480 KETPAETKPMEEMSAPMDETKPTDESPM------EEAPVEYRPLEEVKDQIKASLARPLA 533
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
V ++ +E ++ + G
Sbjct: 534 QAAVKDALQKVSDVLQREYDDYFYADEQNGNPF 566
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 53/605 (8%), Positives = 147/605 (24%), Gaps = 41/605 (6%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + + V ++ + + Q I + + + D
Sbjct: 234 NTADYLAKVTKKP-TEAELKKLFNQYRDQIRNPLTGEPGFLQLDKAAVGFVKAD---YEK 289
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
L+ + +V KD+ + V +
Sbjct: 290 FLEAELAK----ITDEQVAA-----DYEKNKDSSYRKPVADPAAETPLGVPATEPAMEEQ 340
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ + + S + PA P+
Sbjct: 341 PAATEPMTTEPMTTEPMSTEPMKTEPAAEKPAEDKPAAEPAKMEEPAKEAPAEEKTMT-E 399
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
A E + EK + L E + + E
Sbjct: 400 TPPATEKSAEEKPAPEAPAEEKPADEKPAAEESSLLGRGSEVMLVAFQEEGEKPAEDKPS 459
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
+ ++ + ++ + K + ++S + + + ++ +
Sbjct: 460 EEKPATEKPADDAAPAAEPMKETPAETKPMEEMSAPMDETKPTDESPMEEAPVEYRPLEE 519
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
I S +A + VS ++ + + +
Sbjct: 520 VKDQIKASLARPLAQAAVKDALQKVSDVLQREYDDYFYADEQNGNPFDDLDLKKLAQEHG 579
Query: 398 GTSMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL------ 450
+ + A ++ + + +FG PL
Sbjct: 580 VEYGEMPMMDYIAAMESPYGEITHAEFSYNPQQGGLQRNDRRFVDFIFGNKSPLYRPQEF 639
Query: 451 ---SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
S ++P + ++V V + WK + A+ ++ + +
Sbjct: 640 PGASSSSMFSMPADQQFVFWKTDESKGFLPTFDQVRDQVVEAWKLQQAAKLAEAE-AEKI 698
Query: 508 LEYSKEGKNFRDIGKNLGA-----SLLTTNQINRMDNENKFFGYDG-------ISQVFSG 555
++ ++ A ++ +I + N + ++F+
Sbjct: 699 AASAQGDAPLNEVVPVKDAVLVADNITYYQEIRQPGQYNPAQIPGVEKTGLKTLDKIFAT 758
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
PV P + + V +VT + + +D+ + + + + + ++SQ
Sbjct: 759 PVGATVVAPNADETVWYVARVTGERKTEAELRDQLKAEMNGDFPFSV--AYLEGMRSQ-- 814
Query: 616 VTVHD 620
V +
Sbjct: 815 VRWNQ 819
>gi|103486961|ref|YP_616522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingopyxis
alaskensis RB2256]
gi|98977038|gb|ABF53189.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingopyxis
alaskensis RB2256]
Length = 446
Score = 63.3 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 13/152 (8%)
Query: 31 SDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86
+ V +V + + + + E + L
Sbjct: 40 GNVQLYGDNKPNVYRPSATVNGEIITATDIEQRMALIR---IANNNVELPPEEEQR--LR 94
Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
++ NL+ Q + D V + AR + + F + LA +G
Sbjct: 95 NQVFSNLIDEKLQIQEARAADITIDENVVNEQFARLAARFKQT----PEQFAAYLASKGS 150
Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ + ++ + +
Sbjct: 151 SAAAVKQQIRGEFAWDRLLSRNIQSTTNVSTE 182
>gi|319639633|ref|ZP_07994380.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
gi|317399204|gb|EFV79878.1| peptidyl-prolyl cis-trans isomerase [Neisseria mucosa C102]
Length = 329
Score = 63.0 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/285 (6%), Positives = 66/285 (23%), Gaps = 10/285 (3%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V + + + Q + + + + L +++L +++ +
Sbjct: 52 SDGIAAVVDNEVITHRQVEQAVAQARQTMPK-------GTQMDANELRQQVLAQMINQSL 104
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + IA +P D+ S + + + +
Sbjct: 105 ILQAGKRRNIQATDSEIEAVIAHNPNIKNPSAAVRQDIADSIIVEKVRQQAIMQNSRVSD 164
Query: 159 LSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ G+ + D I + +
Sbjct: 165 SEVARYIEQAKQQGITLPEADPVRQYHAQHILIKADNDNAAVGAESTIRKIYSQARSGAD 224
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + + + + + + ++
Sbjct: 225 FGGLARQYSQDSSAGNGGDLGWFADGMMVAPFEEAVHKLKPGQISAPVRTQFGW--HIIK 282
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
N + ++ L++++ + + L D
Sbjct: 283 LNDVREAGTPEERQQNAVRQYLSQQKAQQATTNLLRELHSSSYVD 327
>gi|153820172|ref|ZP_01972839.1| survival protein SurA [Vibrio cholerae NCTC 8457]
gi|126509282|gb|EAZ71876.1| survival protein SurA [Vibrio cholerae NCTC 8457]
Length = 393
Score = 63.0 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ K Q + L +++L+ L+
Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQNKQP-----LPQETVLREQVLEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ + K +
Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEFREQVRKEM 138
>gi|13472995|ref|NP_104562.1| cell binding factor 2 precursor [Mesorhizobium loti MAFF303099]
gi|14023743|dbj|BAB50348.1| mll3467 [Mesorhizobium loti MAFF303099]
Length = 303
Score = 63.0 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 53/165 (32%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ ++ ++ E T + + +A ++ + G + ++
Sbjct: 133 VVNKVTDAEIRARYDQEIANTPPVNEVHARHILVKTKEEAEAIIKQLDGGGDFQKLANEH 192
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+N + + F+ V P++ + V K+ + +
Sbjct: 193 TSDPSGKSNGGDLGWFGPGQMVPEFDKAAFALEVGKYTEQPVQTQFGWHVIKLEDKRAKQ 252
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
D Q + +D +++ L++ V + D +++ +D
Sbjct: 253 PPAFDDVKDQAKQAVIRDKYFALVKSLRAGAKVEIPDAKLKQAVD 297
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 63/175 (36%), Gaps = 5/175 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+K D R + + + ++ EK ++++ E++A Y++ ++
Sbjct: 107 DKDPDFQRRMAFLQQRALHGEMVEKGVVNKVTDAEIRARYDQEIANTPPVNEVHARHILV 166
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLA 333
++EA+ + L G F +LA E + LG F + + F+L
Sbjct: 167 KTKEEAEAIIKQLDGGGDFQKLANEHTSDPSGKSNGGDLGWFGPGQMV-PEFDKAAFALE 225
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
+ FG+ + + + + +F +VK + K VK
Sbjct: 226 VGKYTEQPVQTQFGWHVIKLEDKRAKQPPAFDDVKDQAKQAVIRDKYFALVKSLR 280
>gi|254520524|ref|ZP_05132580.1| peptidylprolyl isomerase [Clostridium sp. 7_2_43FAA]
gi|226914273|gb|EEH99474.1| peptidylprolyl isomerase [Clostridium sp. 7_2_43FAA]
Length = 325
Score = 63.0 bits (150), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/212 (12%), Positives = 62/212 (29%), Gaps = 6/212 (2%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVS----GSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ KI F + + + ++ + VG K+ L
Sbjct: 3 KIKKIIAAGALSIFAFSAVGCEMIQKTPEAIKNTVLAKVGDVKITKGEVDEIADPYLQQY 62
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
N + L + ++ LV + + E++G+ V E+ +
Sbjct: 63 GSDYDTNPNMAE-QVKALRTQAINLLVEEKMMLKKAEELGVTPTKEEVDSEVQKYIESLK 121
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
+ + F + L + G+ EY T+ + + + D+ + Y+
Sbjct: 122 ESYGGD-EQFNAALEQAGMTLDEYTTKLTESMKNKLATEKVTEDLFKDVNITDEDIKAYY 180
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
E + N H+ + + +
Sbjct: 181 EENKDSFGEANAEHIVVSDEAKAKEIRERIIN 212
>gi|194332867|ref|YP_002014727.1| SurA domain [Prosthecochloris aestuarii DSM 271]
gi|194310685|gb|ACF45080.1| SurA domain [Prosthecochloris aestuarii DSM 271]
Length = 439
Score = 63.0 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/200 (13%), Positives = 58/200 (29%), Gaps = 12/200 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
V +I + + + F + L + + V VG + V S
Sbjct: 5 VFRILVALALLCFAGVPV---LRAATVDRIVAIVGNEIVLQSEIEQQAVMTELQY----- 56
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
E A++ L +ILDNLV + + + + + +F
Sbjct: 57 ----PEMAKAKDLRGRILDNLVMQKIVLTKARLDSVNVNESDIDKQTDERLMFLRSRFPS 112
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
++ + + EKE D ++ + G+ S ++ R + +
Sbjct: 113 IEEMEKTFSKSYAMIEKEIKDDIRNQQLIDNLRRQKMSGVTVSYDEVEDFYRQHRDELPS 172
Query: 193 DYIVLNNRHVPAIADPSNAV 212
+ + +
Sbjct: 173 IPESVQISQIIMYPQVTPEN 192
>gi|322421262|ref|YP_004200485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
gi|320127649|gb|ADW15209.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
Length = 342
Score = 63.0 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 9/157 (5%)
Query: 34 LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
L S + V V + + + + K L +++ V E R+ + K+ ++ L
Sbjct: 39 LREGSPTDPVQKVNGKVITRAEVDRAVKALLDQ--KQLRQPVALEELRA--VKKEAMEQL 94
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
VS L Q + + +V IAR + S + F + G+
Sbjct: 95 VSSELLYQAAQKTDIGDVEQKVAQVIARDRARYP-----SDEAFARSVKEAGLTLPMLQQ 149
Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
K ++ +D + G ++ +R
Sbjct: 150 LIRKEMAVSDFIETMFGARINVGEDEARSFYEANRDR 186
Score = 44.5 bits (102), Expect = 0.060, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 41/116 (35%), Gaps = 5/116 (4%)
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
++L KEG+NF + ++ + VF+ + +
Sbjct: 220 ILLHRVKEGENFGILAQSHSDCPSKARGGDLGFFNKGKLDPGLEQAVFALKPGEISDI-V 278
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVT 617
+ + + K+T + ++ ++ + + ++ L+ +A L+ + V
Sbjct: 279 QTSFGFHILKLTEKRGPRLETYEEARPEIYSYLKREKMLRLVAEYVAKLRGKAKVE 334
>gi|62178657|ref|YP_215074.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|75505914|sp|Q57TG8|SURA_SALCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|62126290|gb|AAX63993.1| peptidyl-prolyl cis-trans isomerase, survival protein [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
Length = 428
Score = 63.0 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 9/154 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + + + V V S + + G + +
Sbjct: 7 LLLGIAMIANTSFAAPQVVDKVAAIVNNGVVLESDVDGLMQSVKLNAG-QAGQQLPDD-- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ + Q + +G++ ++ IA K N + D SR
Sbjct: 64 --ATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQNNMTMDQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
LA +G+N Y + K + ++V V
Sbjct: 118 LAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 25/370 (6%), Positives = 93/370 (25%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q++ ++ + + +A++ ++ D
Sbjct: 58 QQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTM-DQMRS 116
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + + I + V+ + + + ++
Sbjct: 117 RLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNL 176
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ + E + + A + + + D I
Sbjct: 177 RHILIALPENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ ++ K ++ + F K + NQ + F
Sbjct: 297 IMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ +KD+ L + + +
Sbjct: 357 LTKLHKGQI-SAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|254480950|ref|ZP_05094196.1| SurA N-terminal domain family protein [marine gamma proteobacterium
HTCC2148]
gi|214038745|gb|EEB79406.1| SurA N-terminal domain family protein [marine gamma proteobacterium
HTCC2148]
Length = 425
Score = 63.0 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 45/371 (12%), Positives = 91/371 (24%), Gaps = 58/371 (15%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + S IS + G + E L ++ LD L+ +
Sbjct: 30 DQVIAVVEDDIIMASELRERMTSVTENISTR-GVEMPPEDV----LIRETLDRLILESIQ 84
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q +G+ ++ G + R N S D F L ++G + + + K L
Sbjct: 85 MQKGARVGVRISDTQLNGAMQRVAA----QNGLSLDQFRMALEQQGQSYQVMREQIRKEL 140
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP---------SN 210
V V + E + + H P +
Sbjct: 141 IIQRVQQGNVNQRIEITEQEVENFLATEEGQKLTQPEYQIMHALLAVSPGAPAAEVERAE 200
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE----------------------- 247
A +T+ E+ E +
Sbjct: 201 AYVTRLLEEISAGAPFDEVVSAPGPYNFTGGNLGWRKLDDLPSLFSDVAPGLSKGKTTLV 260
Query: 248 --ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------FQSLKKGKKF 296
S L ++ + V ++ + + + G+ F
Sbjct: 261 KSDSGFHLVHMADRRGGENMMVSQTKVRHILVKPSEIMTDGQAKALVTSLKARAEDGEDF 320
Query: 297 IQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
LA E + LG + + + G+ + + FG+ +
Sbjct: 321 ADLAREYSEDIGSAQEGGDLGWTDPGQMVPE--FEQTMQITAVGEISDPVKSQFGWHVLE 378
Query: 353 VSNIKPSFTVS 363
V + +
Sbjct: 379 VLDRRDEDMTD 389
Score = 41.0 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 32/323 (9%), Positives = 89/323 (27%), Gaps = 5/323 (1%)
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
A ++ + + +SL F + +K + ++ +
Sbjct: 103 AMQRVAAQNGLSLDQFRMALEQQGQSYQVMREQIRKELIIQRVQQGNVNQRIEITEQEVE 162
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
++ +E +K + +I A V E + ++
Sbjct: 163 NFLATEEGQKLTQPEYQIMHALLAVSPGAPAAEVERAEAYVTRLLEEISAGAPFDEVVSA 222
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
G LF K V G ++
Sbjct: 223 PGPYNFTGGNLGWRKLDDLPSLFSDVAPGLSKGKTTLVKSDSGFHLVHMADRRGGENMMV 282
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
+ + + + T + + L ++G++F D+ + + + + +
Sbjct: 283 SQTKVRHILVKPSEIMTDGQAKALVTSLKARA-EDGEDFADLAREYSEDIGSAQEGGDLG 341
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLT 595
+ Q P+++ + V +V + + K+ ++YL
Sbjct: 342 WTDPGQMVPEFEQTMQITAVGEISDPVKSQFGWHVLEVLDRRDEDMTDTATKNMAMNYLH 401
Query: 596 QMMNKDLLDSVIAYLKSQYSVTV 618
++ LD+ + ++ + V +
Sbjct: 402 NRKYQEELDAWLRQIRDEAFVDI 424
>gi|91977437|ref|YP_570096.1| hypothetical protein RPD_2969 [Rhodopseudomonas palustris BisB5]
gi|91683893|gb|ABE40195.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 309
Score = 63.0 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 43/157 (27%), Gaps = 20/157 (12%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
T L + F + L + S V V + + + +L +S+
Sbjct: 2 TTKFLFRILGLAL--FCTVTVGGGLGVATAQSVAVMVNGEPITNFDIEQ--RSKLDRLSR 57
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+++LD L+ + + G+ + +
Sbjct: 58 ASRT------------RQQVLDELIDEKVKIREGKKYGVSPSDSDIESSFSTMSS----R 101
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+ S D L+ +GI + + +V
Sbjct: 102 MRMSPDQMTKMLSAQGIRPETLKSKIKAEMVWASLVR 138
>gi|148264649|ref|YP_001231355.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
uraniireducens Rf4]
gi|146398149|gb|ABQ26782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
uraniireducens Rf4]
Length = 326
Score = 63.0 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/361 (11%), Positives = 102/361 (28%), Gaps = 71/361 (19%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + ++ + + + + + ++ LDNL+ + Q
Sbjct: 37 AVVNGAPISREECNGELERLK---RSRSVRLFSPALLKE--IQQEALDNLIRRELIYQES 91
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
G+ V E+AR + +FS L+ ++E + + ++
Sbjct: 92 RKGGIGVAATAVDEELARLKTRFANEMEFSSA-----LSSLHVSEASLRNIVERGIAVRT 146
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
+ G + ++ ++ + D
Sbjct: 147 YIDRQFAG---------------------------------QSTVTDEEKKGYYRSHPDT 173
Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
++ P RIS+IL +
Sbjct: 174 FKRPLQVRISHILVR--------------------------TGGMTGKARAEAEKKIEGI 207
Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
E + + E G LG F + + + + K G+ + ++
Sbjct: 208 REKVGKGESFDALARAYSECGSKEQGGDLGFFRRGEM--ARVVEDAVMDLKVGETSGIVE 265
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
FG + +++ KP ++++ + I+ ++ KA EK L + + + E
Sbjct: 266 DRFGLHLIRLTDRKPEQVIAYEAAEGKISEYLKQEKAMEKANRYAGDLRKKARVEINPAE 325
Query: 404 I 404
+
Sbjct: 326 M 326
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/225 (10%), Positives = 59/225 (26%), Gaps = 8/225 (3%)
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+E++R + + ++ + + + R + +
Sbjct: 104 DEELARLKTRFANEMEFSSALSSLHVSEASLRNIVERGIAVRTYIDRQFAGQSTVTDEEK 163
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
Y ++ + V+ T K E K + + K G++F +
Sbjct: 164 KGYYRSHPDTFKRPLQVRISHI--LVRTGGMTGKARAEAEKKIEGIREKVGK-GESFDAL 220
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
+ + V V +E+ + ++T+ K
Sbjct: 221 ARAYSECGSKEQGGDLGFFRRGEMARVVEDAVMDLKVGETSGI-VEDRFGLHLIRLTDRK 279
Query: 581 VGPVQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
V + YL Q + + L+ + V ++
Sbjct: 280 PEQVIAYEAAEGKISEYLKQEKAMEKANRYAGDLRKKARVEINPA 324
>gi|271502081|ref|YP_003335107.1| Peptidylprolyl isomerase [Dickeya dadantii Ech586]
gi|270345636|gb|ACZ78401.1| Peptidylprolyl isomerase [Dickeya dadantii Ech586]
Length = 430
Score = 63.0 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
L + + + V V S + + +Q+ G + +
Sbjct: 6 ALVLGLALSANMAFAAPQEVNKIAAVVDNSVVLESDINSLLQSVKLN-AQEAGQQLPDD- 63
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L +IL+ L+ + Q + +G++ ++ I N S D S
Sbjct: 64 ---ATLRHQILERLIMDNIIMQMAQKMGVQVTDEQLDRSITNIAA----QNHMSLDQLRS 116
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
RLA EG++ Y K + DV V
Sbjct: 117 RLAAEGVSFDTYRSQIRKDMMIADVRNSEVR 147
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 17/198 (8%), Positives = 54/198 (27%), Gaps = 7/198 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G+ P + LF + + + +++ ++ E
Sbjct: 229 GQMGWGRPQELPSLFAERLANPQKGQIIGPIRSGVGFHILRVNDTRGGSQAVSVTEVHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V + +K ++ + +F K L + NQ +
Sbjct: 289 HILLTTSVVMNDAQAKAKLEEVASQIRSGKLSFAAAAKQLSQDPGSANQGGDLGWASPDM 348
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + + P+ + + + ++ + +KD+ L
Sbjct: 349 YDPAFRDALMDLKKGEI-SAPVHSSFGWHLIQLLDTRQVDKTDAAQKDRAYRMLFNRKFA 407
Query: 601 DLLDSVIAYLKSQYSVTV 618
+ + + ++ V +
Sbjct: 408 EEAQTWMQEKRAAAYVKI 425
>gi|88797590|ref|ZP_01113179.1| Parvulin-like peptidyl-prolyl isomerase [Reinekea sp. MED297]
gi|88779762|gb|EAR10948.1| Parvulin-like peptidyl-prolyl isomerase [Reinekea sp. MED297]
Length = 404
Score = 63.0 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/415 (9%), Positives = 110/415 (26%), Gaps = 49/415 (11%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+TW L + +S ++ + + +
Sbjct: 2 QTWFKSALLATSLL------MSTLTYAQTLDRIAAVANDDVITELQLAQRVEAVRQQYRS 55
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + L +++LD ++ + Q E L +V I
Sbjct: 56 NPNVLPTDD-----VLTRQVLDAMILESLQMQLAERGNLVIPEQQVNAAIQSIASRQN-- 108
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM-RPSNLLLDQAKRFYFE 188
+ D ++ + G + ++ + + ++ ++ VG S+ +++ +
Sbjct: 109 --MTLDQLLAAVQSSGQSVSDFREQIRREITLNELQQQIVGRQIFISDAEVERFLKSQSG 166
Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEK---------------YKDNYRAPEYKRIS 233
+ + + A + + P R
Sbjct: 167 QSLQETEYQLYYKRFDVDQQAEADALVDRLNSGESLLDSPDSRDLGMRTLDQIPSIFRTL 226
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------- 286
+ + +E L +K + + E + ++ + +
Sbjct: 227 VPVLEENEAVLLPRDGVLHLAQLADKTEAASVNIEEYQLRHILIKTDQLFNAESAQALAE 286
Query: 287 --FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
Q + G+ +LA+E + LG + + + + ++G+ +
Sbjct: 287 DLRQRVLNGESMAELADEYSQDNGSRGRGGELGWATLDNYVESFRDAAR--STEEGELSD 344
Query: 341 VIHGSFGYVIAHVSNIKP---SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
V +G+ V + V +++ ++ Q E
Sbjct: 345 VFRSPYGFHFLRVEGQRTRDVGTDVLRNQIRNQLSQQRYSEALQRWQSELRAESF 399
>gi|119470578|ref|ZP_01613281.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Alteromonadales
bacterium TW-7]
gi|119446279|gb|EAW27556.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Alteromonadales
bacterium TW-7]
Length = 431
Score = 63.0 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 9/135 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + S + + ++ G + + L + ++ LVS A +
Sbjct: 28 DKVVGIVNQGVILQSEVNSIVDRVKKQAQEQ-GQQLPKDET----LRVQAMERLVSQALM 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E +GL+ ++ +A G + G + + Y + K +
Sbjct: 83 MQMAERMGLQISDSQLDQTLANIAKEQGGTIS----DLRRTVEASGDSFQAYREEIRKEI 138
Query: 160 SRTDVVGMFVGGMRP 174
+ V V
Sbjct: 139 TTQQVTRANVDRRIY 153
>gi|226942107|ref|YP_002797181.1| SurA [Laribacter hongkongensis HLHK9]
gi|226717034|gb|ACO76172.1| SurA [Laribacter hongkongensis HLHK9]
Length = 434
Score = 63.0 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 42/413 (10%), Positives = 117/413 (28%), Gaps = 60/413 (14%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V +Q + + ++ ++++ + L +++L+ +++
Sbjct: 34 DRIVAVVNKQAITQQALDTRVREAEAQLTRQ-KVPLPPAGV----LQQQMLERMINEEVQ 88
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q+ + G+ D + + R + N+ + + F +RL +GINE + ++ +
Sbjct: 89 LQYAGNNGIALDSAELDRIMDRL----AEQNRLTPEQFRARLKADGINEAAFRADLSRQV 144
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ V + A + + L++ + S + + ++
Sbjct: 145 ILDRLREREVDSKVNVSDSEVDAVLRSAVSANRTEFRLSHILITLPEQASPQEVAKRQQR 204
Query: 220 YKDNYRAPEYKRISYI------------------------------------LFDVHEKE 243
D +
Sbjct: 205 ASDAAAKLAAGAPFAQVAASYSDAQDALSGGDLGWRSATRLPPVFVAALEQLKPGQSTQV 264
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV---------FPNQKEADEAFQSLKKGK 294
+ L+ E +++ E R V ++ Q + + G
Sbjct: 265 LRSANGLHILKLEARRSRGDAQMVEQRQVRHILVRANEITSDKDAQTRILQIRDRIANGM 324
Query: 295 KFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F + A+ + LG + + + G + + FG+ +
Sbjct: 325 PFAEAAKLYSEDGSAPKGGDLGWVNPGDMV-PEFERAYL-ALPVGQLSQPVRSPFGWHLI 382
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
V + + +I ++R K+ + E ++L + + +
Sbjct: 383 LVDGTRQQDIGD-ARQRAEIRQELRARKSEQVYAEWLQQLRASAYVSERLQDQ 434
Score = 41.4 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 17/200 (8%), Positives = 55/200 (27%), Gaps = 5/200 (2%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D G + +F + + V ++++ D +
Sbjct: 227 DAQDALSGGDLGWRSATRLPPVFVAALEQLKPGQSTQVLRSANGLHILKLEARRSRGDAQ 286
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQL-VLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ E + + + ++ L + + G F + K +
Sbjct: 287 MVEQRQVRHILVRANEITSDKDAQTRILQIRDRIANGMPFAEAAKLYSEDGSAPKGGDLG 346
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS---KVGPVQEKDKFISYL 594
+ + PV + P+ + + + V + +G +++ + L
Sbjct: 347 WVNPGDMVPEFERAYLALPVGQLSQ-PVRSPFGWHLILVDGTRQQDIGDARQRAEIRQEL 405
Query: 595 TQMMNKDLLDSVIAYLKSQY 614
++ + + L++
Sbjct: 406 RARKSEQVYAEWLQQLRASA 425
>gi|323143364|ref|ZP_08078052.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066]
gi|322416882|gb|EFY07528.1| PPIC-type PPIASE domain protein [Succinatimonas hippei YIT 12066]
Length = 457
Score = 62.6 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 7/147 (4%)
Query: 21 LFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ + G++ + + +T V + S + ++E+ G V+
Sbjct: 18 IALALTAALGIAFNANAQTLDTTAAVVNNDIILTSELD-AMQKEMAANFASRGQQVSP-- 74
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
V K L+ L++ + + Q GL + ++ + + +G K D
Sbjct: 75 ---VNARKAALEQLITKSLILQQARTHGLNLNDMQLDQALEQFAARNGVSVKTLLDQMGP 131
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVG 166
L+ E+ D + R V
Sbjct: 132 GLSEAAQRERFREDLIIGEVRRNQVRN 158
>gi|239996025|ref|ZP_04716549.1| survival protein surA [Alteromonas macleodii ATCC 27126]
Length = 427
Score = 62.6 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/203 (11%), Positives = 60/203 (29%), Gaps = 12/203 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K + L + + + V V V + V S +
Sbjct: 1 MKFIIRALMLG-ALLSFNSVAQEVMLDRVAVIVDQGVVLESEIDALVQDVKRNAEAN-NQ 58
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ S+RA L + ++ L++ + Q E +G+ ++ I+
Sbjct: 59 QLPSDRA----LRTQAIERLITKSLQLQMAERMGIRISDPQLEQTISNIAANQNATI--- 111
Query: 134 HDVFVSRLAREGINEKEYIDHYTKM--LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ ++LA EGI +Y + + + + + + +
Sbjct: 112 -EELRAQLAAEGIAYDDYREDIREEVIMGEVRRANVRRRVYITPQEIETLIDLMEQQGAT 170
Query: 192 VDYIVLNNRHVPAIADPSNAVLT 214
L + + +P++ +
Sbjct: 171 QAEYRLGHILIGFPPEPTDEDIQ 193
>gi|292492134|ref|YP_003527573.1| SurA domain protein [Nitrosococcus halophilus Nc4]
gi|291580729|gb|ADE15186.1| SurA domain protein [Nitrosococcus halophilus Nc4]
Length = 425
Score = 62.6 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 58/492 (11%), Positives = 129/492 (26%), Gaps = 80/492 (16%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ V + W + ++ V V + V S + K G + +
Sbjct: 5 LVAVLAVFWSMGSFGATIL-DRIVAVVNEEVVLESELEQMVHTVQEQLVAK-GTPLPPDY 62
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L++++L+ LV Q G+ + + R +DN + F
Sbjct: 63 M----LEQQVLERLVMQQLQLQLAARTGIRVGDETLNQALRRI----AEDNGLTLSQFRD 114
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
L ++G N + ++ + L + + V
Sbjct: 115 VLEQDGYNFPSFRENIRRELIISQLHKREVN----------------------------- 145
Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
S A + + + ++ ++ L A E
Sbjct: 146 ----DRVTVSEAEIDNFLTTQRKRGNQDVQYQLGHV-----------------LIAVPEA 184
Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
+ EQL+ ++ D +L L +LG
Sbjct: 185 ASPEQLQAARAKGEQLLRQLREGMDFQKAALAYSDGQQAL--------EGGNLGWRKMGQ 236
Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
+P +L + + G+ + +I G+ I + + + +
Sbjct: 237 LP--TLFVDVVPKLQVGEISELIRSPSGFHIVKLLDRRGEEQQVVTQTHARHILLRTDEL 294
Query: 380 ASEKVKEDY-KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
S + +L + G E+++ G G+ + +
Sbjct: 295 TSNRDARLRLGQLRQRALQGDDFSELAQAHSDDKASALKGGDLGWISPGQMIPRFEEVMR 354
Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
L DP G ++ + + + + + K EE
Sbjct: 355 SL-------DPGEISKPFQTQFGWHVVQILNRRQQNMTEEFN--RNRARMEIRQRKIEEE 405
Query: 499 VSSKANQLVLEY 510
+ + QL E
Sbjct: 406 LENWLRQLRDEA 417
>gi|238897972|ref|YP_002923652.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465730|gb|ACQ67504.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 322
Score = 62.6 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 67/215 (31%), Gaps = 14/215 (6%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ W + + +L F ++ + + V V + S + K +
Sbjct: 2 KNWRIYVLVWLLCSHFTVFSAPKEI-----NKIVAIVNDSVILLSDLNHRLKAIKINAN- 55
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+N L +IL+ L+ + Q IGL+ + IA +
Sbjct: 56 ----NINQSLPDDAILRHQILERLIVESIQLQIANKIGLKIPDEDLDKIIADI----ARK 107
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
N+ + D S+LA E IN Y + + ++V+ V + N
Sbjct: 108 NRLTVDQIRSKLASENINYGTYRNEIRNQILISEVLKNAVQPRINILPQEVDSLSKLILN 167
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ LN + + + + K N
Sbjct: 168 EKNQNMELNLSQILIPLTENPSQKEIDKAEKKANK 202
>gi|319786209|ref|YP_004145684.1| SurA domain [Pseudoxanthomonas suwonensis 11-1]
gi|317464721|gb|ADV26453.1| SurA domain [Pseudoxanthomonas suwonensis 11-1]
Length = 442
Score = 62.6 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/166 (12%), Positives = 53/166 (31%), Gaps = 10/166 (6%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
A + + G++ A + V + S + + + + +
Sbjct: 7 AIFLAASALLSLPVAGVAQAQQQLQPVERIAAIVEEDVILQSELDLALRNVMAQYAGRES 66
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ L++++L+ LV G+ V +A + N
Sbjct: 67 QLPP-----RPVLERQVLERLVLTRLQVARARQQGIRVSEQEVNQAVAMI----AQQNGL 117
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ D RLA +G++ +E+ + ++ + F+ + S
Sbjct: 118 TLDGLRQRLASDGLSFEEFRRSLNEEITVQRLRQGFIQRINVSEGE 163
>gi|330448801|ref|ZP_08312448.1| peptidyl-prolyl cis-trans isomerase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328492992|dbj|GAA06945.1| peptidyl-prolyl cis-trans isomerase [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 433
Score = 62.6 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/193 (12%), Positives = 58/193 (30%), Gaps = 11/193 (5%)
Query: 22 FVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ ++ G+S + V++V + S K +++ +
Sbjct: 8 VLSLMMMGMSATSMAAPQELDQVVMTVNDGVILQSDVNAMLKTVHLNAAEE-HQQLPPND 66
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L ++++D L+ Q + +G+ D ++ IA G D
Sbjct: 67 I----LRQQVMDKLIMENLQIQQAKQLGIRIDDSQLDQAIADVAKQRGITV----DQLRQ 118
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
LA+ GI+ + + + ++ + V A ++ + N
Sbjct: 119 TLAKAGISYPMFREQMRNDMLASEARTVIVRKRVNILPQEVDALAKQMAKQTQQNVQYNI 178
Query: 200 RHVPAIADPSNAV 212
+ D
Sbjct: 179 SQIQIRVDEDAEK 191
Score = 42.5 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 37/436 (8%), Positives = 123/436 (28%), Gaps = 16/436 (3%)
Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
+ + L + A + + L Q D ++ E+
Sbjct: 1 MKKWKYSVLSLMMMGMSATSMAAPQELDQVVMTVNDGVILQSDVNAMLKTVHLNAAEEHQ 60
Query: 247 EISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ +++ + +K + +I+ +QL + + ++ I + + +
Sbjct: 61 QLPPNDILRQQVMDKLIMENLQIQQAKQLGIRIDDSQLDQAIADVAKQRGITVDQLRQTL 120
Query: 307 LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
+E + + LA ++ + ++ + ++
Sbjct: 121 AKAGISYPMFREQMRNDMLASEARTVIVRKRV-NILPQEVDALAKQMAKQTQQNVQYNIS 179
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
+ ++ A +K K++ + + L G +++ R L ++ +
Sbjct: 180 QIQIRVDEDAEKAARDKAKQEAEDIVAQLKKGADFSQLAYRYSKGPKALKGGEWGWMSKE 239
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD- 485
+F +++ Y ++I + + EV
Sbjct: 240 EMP---------TIFADQIQNNGKDAIIGPFRSGVGYHILKINDVKGMPSVSVVEVKARH 290
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFF 544
+ + + + Q+ ++F K + + +
Sbjct: 291 ILIKPSVILSDAAAKKELEQIRQRIISGKQSFAAAAKAYSQDPGSAANGGELGWQVPDMY 350
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKD 601
+V + PV+ + P ++ + + +V K++ L +
Sbjct: 351 APAFKDKVETLPVDKI-SEPFKSAFGWHIVEVEGRRKVDRTDAAMKNRAAQILFNRKFNE 409
Query: 602 LLDSVIAYLKSQYSVT 617
+ + L++ +
Sbjct: 410 EAQTWLQELRAGAYIE 425
>gi|78485996|ref|YP_391921.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
crunogena XCL-2]
gi|121956485|sp|Q31F26|SURA_THICR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|78364282|gb|ABB42247.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomicrospira
crunogena XCL-2]
Length = 451
Score = 62.6 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/261 (9%), Positives = 64/261 (24%), Gaps = 12/261 (4%)
Query: 5 IRKASRTWVAKIFLVVLFV-PFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
++K T + K+ ++ + PF W V V + S
Sbjct: 1 MKKIIPTNLFKLISILFILTPFFAWSAPQETLI---DRVVAVVNDNIILKSELDAEVNLA 57
Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ + V N E S K+LD ++ Q I +G++ ++ +I
Sbjct: 58 KQDLQARNIPVTNPEELAS-----KVLDKIILERLQLQRINQLGIKIADDELFSQIQEIA 112
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ D + + + + + + + V
Sbjct: 113 KQNNLTVIELRDRLNMSQKN---GFESFRERIRQQMLFQKLREVEVLSKTQVTEDEVSNF 169
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
D + ++ + + ++ + V E
Sbjct: 170 IQRQALVQSDVEYHLGHIMVSLPESATPDQRDASKQKAQEILQKIRTGGDFSQMAVRYSE 229
Query: 244 KKIEISNDELQAEYEKNKEKY 264
+ +L +
Sbjct: 230 GSKALQGGDLGWLGIDQIPTF 250
>gi|164685824|ref|ZP_01945801.2| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
burnetii 'MSU Goat Q177']
gi|165918731|ref|ZP_02218817.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
burnetii RSA 334]
gi|212219488|ref|YP_002306275.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
gi|164601340|gb|EAX33680.2| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
burnetii 'MSU Goat Q177']
gi|165917559|gb|EDR36163.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
burnetii RSA 334]
gi|212013750|gb|ACJ21130.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuK_Q154]
Length = 321
Score = 62.6 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/280 (11%), Positives = 73/280 (26%), Gaps = 11/280 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + S ++ Q+ K++LD L+
Sbjct: 38 DQIVAVVNDEIITQSELNHALTAAKQQFMQRQ-----ISLPDQKTFKKQVLDQLIYQKLQ 92
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + ++ + + +AR + N S +L +EGI+ KE+ K L
Sbjct: 93 LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148
Query: 160 SRTDVVGMFVGGMRPSNL--LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ + + N + K+ + S +Y + + +
Sbjct: 149 IISKLQHQALQDTISINKSDIAAFQKQHAGQIASTEYHIATILIPLPASATQAQINHAKG 208
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + + + S EL + K K E+ Q
Sbjct: 209 KAALVLKQLQKGSSFETAMKMHPGSADLGWRSAKELPQVFVKTVLKMKPNEVTGPIQAPN 268
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
++ + + ++
Sbjct: 269 GFHIVKLLDKEAKNTVSDQQIQRIVYQQKVEKALQKWLTQ 308
>gi|237809111|ref|YP_002893551.1| SurA domain-containing protein [Tolumonas auensis DSM 9187]
gi|237501372|gb|ACQ93965.1| SurA domain protein [Tolumonas auensis DSM 9187]
Length = 436
Score = 62.6 bits (149), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 57/199 (28%), Gaps = 9/199 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ + V + V S + +++ + L K+ILD L+ + +
Sbjct: 31 DNVIAIVNKDVVVQSELDRLMHKVQADAAEQ-RQTLPP----YHQLHKQILDRLIEDSLI 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E GL ++ +A + S ++ REG+ E+ + K +
Sbjct: 86 LQLAERQGLRIGDSQLDQALASIAAEK----RLSVADMQAKAEREGLTPAEFRETVRKEM 141
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+++ + + + + H+ Q
Sbjct: 142 MISEMRRNQLRQRINITDQEVKQLAKQISEQGNKGQRFHIEHILLSLSSDADRGEQQRVA 201
Query: 220 YKDNYRAPEYKRISYILFD 238
K + K+ +
Sbjct: 202 EKARQLLQQLKKGADFHQM 220
>gi|206890347|ref|YP_002248393.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
[Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742285|gb|ACI21342.1| PpiC-type peptidyl-prolyl cis-trans isomerase, putative
[Thermodesulfovibrio yellowstonii DSM 11347]
Length = 341
Score = 62.2 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/228 (11%), Positives = 58/228 (25%), Gaps = 10/228 (4%)
Query: 14 AKIFLVVLFVPF----LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
K ++ V F LI+ L+ + V R + +S + +
Sbjct: 23 IKFVFFLMIVFFCTQLLIFKLNAEENKFFVDKVIAVVNRDVITWSELYKYMEFTAKDEIK 82
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + ++ ++ L+ L+ + E G+ + G I K
Sbjct: 83 ALNPDEKFKYFKAHE--EEFLERLIDTKLQIEEAEKYGIFVTDSEIEGAINDIK----KK 136
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+ F+ L +EG++ +Y + + + V
Sbjct: 137 YALTEQAFLETLKKEGMSINDYKKMLKEQIIIGRALNTLVKSKIIITDAEINNYIAAHPE 196
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
S D + + L + E
Sbjct: 197 LSCDDEGYYVSQIFLKKRENQEELKAKINEVFKRLIQGEPFSKVASQM 244
>gi|320333920|ref|YP_004170631.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
maricopensis DSM 21211]
gi|319755209|gb|ADV66966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
maricopensis DSM 21211]
Length = 639
Score = 62.2 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 60/636 (9%), Positives = 152/636 (23%), Gaps = 66/636 (10%)
Query: 12 WVAKIFLVVLFVPFL--IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + V+L + + L L + + V V + + + +
Sbjct: 16 VLLIVLAVMLVLGMVASFTPLLGNLGGQNKGNPAVKVNGTVITDQDLES-----VRRGNP 70
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+G + + I+++ V L Q D + V +++ +
Sbjct: 71 VLG--LTQDGVLGDDFKTAIVESKVQETLLKQGASDQ--QVSRAEVNDAVSKL---REQL 123
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
S+ +V RL + G + + + L+ + A+ +
Sbjct: 124 GLKSNKEWVDRLQQYGFTDASFREAQRTQLAWQKKLKALQDATPKG----TPAEAQLYYT 179
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
D R V S+ + + I
Sbjct: 180 LHPDEFKSEARIVGRQIAVSSEAKAKQLLAQAKGGADFAKLASENSTVNKDRGGALGPIE 239
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQ--LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
N E + + + Q L + +++ E +S
Sbjct: 240 NGEPKPVAKITLPAEVGEAAFALTQGGLTDVVKSGDKFYIVKVERFVPASTQPFEAVRSK 299
Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
+ ++ ++ + D + + V + + +
Sbjct: 300 AIDAVTKQKQDAAVEAWYTDLRNKANVEFVDSAW-KWDDSTVATVNDQRVRYPELLTRML 358
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
+ + + L T ++E + E + + LPLV +
Sbjct: 359 SDQQLPALLQQLPPADAAKTVNGFVKPGVLDTLVNEYAASEIVKAQKLPLVG--SRTALL 416
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
+ A ++ + +D P + +
Sbjct: 417 ASLEAYGARDVKITDAQVRDAYQKNISAYRTPASANI----------------------- 453
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-- 545
+ + KA ++ KN G ++ + + +
Sbjct: 454 -----SEISFASREKALAFRTAFAASPKNLSSSAARAGGTVNELGTVQQGQADQSGQPKL 508
Query: 546 YDGISQVF-------SGPVEMVKCFPIENGL---SYVVFKVTNSKVGPVQEKDKFISYLT 595
+ + + NG +YV V S + D+ L
Sbjct: 509 NPLLDKAVYDAGRLEPAGEGSLSDVVEVNGRFSLAYVRDLVRGSTKPLSEVSDQVRETLL 568
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
Q + + +T + + L ++
Sbjct: 569 QEARTQAGQAYLQAQLKGLKIT---KSLDKVLAAQE 601
>gi|150388008|ref|YP_001318057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
metalliredigens QYMF]
gi|149947870|gb|ABR46398.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
metalliredigens QYMF]
Length = 319
Score = 62.2 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/193 (11%), Positives = 52/193 (26%), Gaps = 13/193 (6%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + +L + LI S + V V F +
Sbjct: 2 KKIKNKSIGLLTALLAIMLLITACSTP--AQLSQDAAAEVNGATVSMEEFDKTLALFKLS 59
Query: 67 ISQKIGFVVNSERARS------VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ G+ + + + + I++ L+S + + + GL +
Sbjct: 60 YEMQYGYNEDIFQQDIGGMTLLENIKEGIMEKLISDVLIAEKAVESGLTVSEEEITEAYE 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
++ D FS + L I+E + K + + + +
Sbjct: 120 PYRVYEESDENFS-----AFLKENEIDETFIREQVKKDILLFKYRDFYNENLEMTEEAAR 174
Query: 181 QAKRFYFENRSVD 193
+ E S
Sbjct: 175 KFFDENPEMFSTQ 187
>gi|154706423|ref|YP_001425383.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
5J108-111]
gi|154355709|gb|ABS77171.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii Dugway
5J108-111]
Length = 321
Score = 62.2 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/280 (11%), Positives = 73/280 (26%), Gaps = 11/280 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + S ++ Q+ K++LD L+
Sbjct: 38 DQIVAVVNDEIITQSELNHALTAAKQQFMQRQ-----ISLPDQKTFKKQVLDQLIYQKLQ 92
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + ++ + + +AR + N S +L +EGI+ KE+ K L
Sbjct: 93 LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148
Query: 160 SRTDVVGMFVGGMRPSNL--LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ + + N + K+ + S +Y + + +
Sbjct: 149 IISKLQHQALQDTISINKSDIAAFQKQHAGQIASTEYHIATILIPLPASATQAQINHAKG 208
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + + + S EL + K K E+ Q
Sbjct: 209 KAALVLKQLQKGSSFETAMKMHPGSADLGWRSAKELPQVFVKTVLKMKPNEVTGPIQAPN 268
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
++ + + ++
Sbjct: 269 GFHIIKLLDKEAKNTVSDQQIQRIVYQQKVEKALQKWLTQ 308
>gi|169633358|ref|YP_001707094.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii SDF]
gi|169152150|emb|CAP01052.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii]
Length = 441
Score = 62.2 bits (148), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/404 (12%), Positives = 110/404 (27%), Gaps = 55/404 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + L VL S F+ V V + S +
Sbjct: 9 KHLKQFFKATTLAVLISS------SMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHE 62
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI------- 119
+ + V L ++LD L+ + ++ G++ D + +
Sbjct: 63 LQAQKKEVPP-----QQYLQFQVLDQLILRQAQLEQVKKYGIKPDEKSLNEAVLKVASQS 117
Query: 120 --ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
F K + + + + +R + +++SR + V S
Sbjct: 118 GSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQ 177
Query: 178 LL----------------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
D + + V + N + A+ S A +
Sbjct: 178 GQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQNNDLNALKKFSTATVKVEGADMG 237
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDE----LQAEYEKNKEKYFSPEIRTVEQLVF 277
+ ++ + + + + IS + L+ K E+ ++
Sbjct: 238 FRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILI 297
Query: 278 PN---------QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
++ D ++ LK G+ F LA SLG + +
Sbjct: 298 QPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSNDTGSARDGGSLGWVTPGMMVPE- 356
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
D G+ + FG+ I V++ + + +
Sbjct: 357 -FDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDMTHEYQER 399
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 21/283 (7%), Positives = 80/283 (28%), Gaps = 5/283 (1%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I +F + + A E ++++
Sbjct: 155 QQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQ 214
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ ++ + + L +++ DG ++
Sbjct: 215 NNDLNALKKFSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLK 274
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + + + T + + E + + + + K G++F +
Sbjct: 275 LLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 334
Query: 527 SLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
+ + + + ++ PV + P + + + +VT+ + +
Sbjct: 335 DTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEI-SEPFQTQFGWHILQVTDKREKDMT 393
Query: 585 -QEKDKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +++ + +DS + +++ V + D + +
Sbjct: 394 HEYQERMARQILGERQFNTEIDSWLREVRANAYVEIKDPSLDK 436
>gi|296122448|ref|YP_003630226.1| hypothetical protein Plim_2201 [Planctomyces limnophilus DSM 3776]
gi|296014788|gb|ADG68027.1| hypothetical protein Plim_2201 [Planctomyces limnophilus DSM 3776]
Length = 913
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/297 (14%), Positives = 83/297 (27%), Gaps = 58/297 (19%)
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
K + + E +++E E + + + G ++ +
Sbjct: 606 KRTAAMAEIATKVKEIAGKHKLKYEETSHLSEMELRAKTAGHIGVALETTLDRNPNQQPV 665
Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTA 496
+ K DP + E P+R +L + V V + WK K
Sbjct: 666 PVHTAAFKIDPFRSRFAEDRLVNRDFIYWVIERKPSRVPELSDGPVKDMVVEAWKREKAR 725
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK-------------- 542
E +A++LV + K DI K+ + + + + + N
Sbjct: 726 ELAEKRASELVKLAKEGNKPLADIVKDQTITGKPESPVITLRDTNAFSWMTVDSSNPQMS 785
Query: 543 -----------------FFGYDGISQVF-SGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
G D + VF V ++ + +VT P
Sbjct: 786 FFKAFLRPALSNVTGVTGAGNDFMRTVFQDLQPGQVGAALNQDRSIVYLVEVTKRAGLPD 845
Query: 585 Q-------------------EKDKFI-----SYLTQMMNKDLLDSVIAYLKSQYSVT 617
EK +F YLT+ + +L L++++ V
Sbjct: 846 SGLTSLEELRSEYLATSFIPEKSQFNLPTTYQYLTEGQSMELQQRWFDELRTRFDVK 902
>gi|310825131|ref|YP_003957489.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
gi|309398203|gb|ADO75662.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
Length = 330
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 11/129 (8%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V V + + + F +EL G E + +LD L+ L
Sbjct: 33 NVVAMVNGEVLGRAEFEQELWRELSSAE---GPERTPEEVE--PFKRALLDTLIKRMLLL 87
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q + L V + R + + F LA+ ++ E L
Sbjct: 88 QQAKQYNLTVTPDEVDRRMLRL------SGDYPAENFSEVLAQGQMSLAELRAREANRLI 141
Query: 161 RTDVVGMFV 169
+ V
Sbjct: 142 IEKLFTNHV 150
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/296 (11%), Positives = 92/296 (31%), Gaps = 13/296 (4%)
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
P V+A V+ QE+ +++++ + E+V+ + L + L
Sbjct: 25 PPQEEPDANVVAMVNGEVLGRAEFEQELWRELSSAEGPERTPEEVEPFKRALLDTLIKRM 84
Query: 400 SMDEISRREKIVSIDLPLVDF-----AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
+ + +++ + VD +G + + L + ++
Sbjct: 85 LLLQQAKQYNLTV-TPDEVDRRMLRLSGDYPAENFSEVLAQGQMSLAELRAREANRLIIE 143
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
+ + Y V + E E + + + +A ++ + K G
Sbjct: 144 KLFT-NHVYARVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLDEARRVQAQL-KAG 201
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
K F D+ + S + VF+ V + Y +F
Sbjct: 202 KKFADLARRYSLSADAKVGGDLGFFPRGQMPPVFDEVVFNLRPGQV-SDVVSTEYGYHLF 260
Query: 575 KVTNSKVGPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+V K ++ + + + + ++ ++ L + + V++ +Q
Sbjct: 261 RVLEFKPARKRDFVEVRAKVEAREVKRKQEEAHEAFEKALLDKAKLWVNERTLQSI 316
>gi|262172454|ref|ZP_06040132.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus MB-451]
gi|261893530|gb|EEY39516.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus MB-451]
Length = 431
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 9/140 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ V + + S V V + S + K Q
Sbjct: 8 LISVISALTLFNAHAEPQQLDSVAVIVNSGVILQSDVDGALKTVKANAKQNNQP-----L 62
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
+ L +++L+ L+ Q E IG++ D R+ I K+N+ + + +S
Sbjct: 63 PQETVLREQVLEKLIIDTLQQQEAERIGVKIDDNRLNDAIKEI----AKNNQQTQEQLIS 118
Query: 140 RLAREGINEKEYIDHYTKML 159
+A+EG+ E+ + K +
Sbjct: 119 SVAQEGLTYPEFREQVRKEM 138
Score = 38.7 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 28/261 (10%), Positives = 70/261 (26%), Gaps = 6/261 (2%)
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
+ D Q +I+ +V+E + E + E+ +
Sbjct: 164 ELLAQETDATVQYKISHIQLRVEEGQDKSEAESLANKLVGELKHGADFAQMAYTYSKGPK 223
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
G + +F K + ++I + + EV
Sbjct: 224 ALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEV 283
Query: 483 LTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
+ + + E + N+ + F ++ + + Q + +
Sbjct: 284 NARHILIKPTIILSDEGAQKQLNEFIQRIKNGEATFGELAQQYSQDPGSAAQKGELGYQT 343
Query: 542 KFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQM 597
+ Q+ PV + P + + + +V + K+K L
Sbjct: 344 PDLYVPEFKHQIEILPVGQI-SEPFQTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNR 402
Query: 598 MNKDLLDSVIAYLKSQYSVTV 618
+ + + L++ V V
Sbjct: 403 KFNEEASAWLQELRASAFVEV 423
>gi|315648234|ref|ZP_07901335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
V453]
gi|315276880|gb|EFU40223.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
V453]
Length = 399
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/379 (10%), Positives = 107/379 (28%), Gaps = 11/379 (2%)
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
+ +++LQ + E P +E ++
Sbjct: 1 MKDNDLQPNHPGQPEDEQGQAQEKENIPQEPGDLSNEEERIDSDSTYPESSEPYKEESDQ 60
Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
+ E P+ L D G+ + + + A + + +
Sbjct: 61 PLSPVAVMHSEDQPEQPLHDEQPPAGDGGNGSKGWMIASLVLAAALIVVLIVPPFAKGSG 120
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
+ +A + + + + + + + E ++++ + + D +
Sbjct: 121 NEAVAKVNDVKITKDTLYNELVEAGGKQTVNSMITEELIKQELAKQSITVTDAEVNEEVD 180
Query: 428 KEVAAIPYKEQLLFRVFG-----KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
A+ P ++Q + +D V L +++ + +
Sbjct: 181 ALKASFPSEDQFNMALQQSGMTLEDLKGQTKTQVELKKLMGDKIKVTDEEIKTIYDQNKE 240
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+ + E +A+++V + K+G +F I K +
Sbjct: 241 SFATPEQVRASHILVETKEEADEIVKQL-KDGADFAAIAKEKNQDATKDTGGDLDFFGRG 299
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMM 598
F + + P+++ Y + K+T+ K +K + L
Sbjct: 300 EMDPAFEEAAFKLKKDEI-SDPVKSSFGYHIIKLTDRKEATNPTLEDKKVEIRKQLENQK 358
Query: 599 NKDLLDSVIAYLKSQYSVT 617
+ I LK + ++T
Sbjct: 359 VYQESSAYIQELKDKATIT 377
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 40/129 (31%), Gaps = 23/129 (17%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
S+ W+ + L ++ + SG+ V V K+ + N + G
Sbjct: 90 NGSKGWMIASLV--LAAALIVVLIVPPFAKGSGNEAVAKVNDVKITKDTLYNELVEAGG- 146
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
K+ ++++++ + Q + + V E+
Sbjct: 147 --------------------KQTVNSMITEELIKQELAKQSITVTDAEVNEEVDALKASF 186
Query: 127 GKDNKFSHD 135
+++F+
Sbjct: 187 PSEDQFNMA 195
>gi|306843392|ref|ZP_07475993.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO1]
gi|306276083|gb|EFM57783.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO1]
Length = 331
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/242 (10%), Positives = 71/242 (29%), Gaps = 11/242 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + +++ ID+ + + K + + + L
Sbjct: 78 DQAAGDLDPQFSRLPVEQRRLAALAALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERAL 137
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + D KE + +V+ VKT EE +
Sbjct: 138 HNEYFKNAIVDKISDADVRARYDKEIAAMPPQV------EVRARHILVKTKEEA-----E 186
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+++ + G F D+ K ++ + + F+ P+
Sbjct: 187 AIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPV 246
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ Y V ++ + + D+ + ++ ++ + L+ + D I++
Sbjct: 247 QTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEK 306
Query: 626 YL 627
+
Sbjct: 307 AM 308
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 37/215 (17%), Positives = 83/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+ +++A Y+K ++
Sbjct: 120 DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 179
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+ S LG F++ + + F+L
Sbjct: 180 KTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFTEGQMV-PEFEKAAFALKP 238
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 239 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 296
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 297 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 331
>gi|254292211|ref|ZP_04962978.1| survival protein SurA [Vibrio cholerae AM-19226]
gi|150421868|gb|EDN13848.1| survival protein SurA [Vibrio cholerae AM-19226]
Length = 431
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ K Q + L +++L+ L+
Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQNKQP-----LPQETVLREQVLEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ + K +
Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASIAQEGLTYPEFREQVRKEM 138
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 15/239 (6%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ +L L G +++ L D+ + +F
Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP---------TIFADQ 245
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKA 503
K + ++I + + EV + + + E +
Sbjct: 246 IKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQL 305
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKC 562
N+ V F ++ + + Q + + + Q+ + PV +
Sbjct: 306 NEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQI-S 364
Query: 563 FPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + + +V + K+K L + + + L++ V V
Sbjct: 365 EPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEV 423
>gi|94971251|ref|YP_593299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Koribacter versatilis Ellin345]
gi|94553301|gb|ABF43225.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Koribacter versatilis Ellin345]
Length = 369
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 10/196 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSGS---STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
+L FL+ L+ +F+ + + V Q + + +Q L + Q+ +
Sbjct: 14 ILVSSFLVAALAVPMFAGDDTVVEEIIARVNNQIITRADLRRESEQVLDQLKQQDAATAD 73
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+ + K +L +L+ L D+G+ AD I R + N S D
Sbjct: 74 QKFVQR---QKDVLRDLIDQQLLVDKGADLGISAD----AELIKRLDEMRKQMNLASMDD 126
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ ++G++ +++ + + V+ VG +Q ++
Sbjct: 127 LENEAKKQGVSFEDFKQNMKNQIITQRVISQEVGSHIQITKDEEQKFYDAHKSEMERPEQ 186
Query: 197 LNNRHVPAIADPSNAV 212
+ + D
Sbjct: 187 VRLSEILVPVDAEKDP 202
>gi|148264051|ref|YP_001230757.1| hypothetical protein Gura_1994 [Geobacter uraniireducens Rf4]
gi|146397551|gb|ABQ26184.1| hypothetical protein Gura_1994 [Geobacter uraniireducens Rf4]
Length = 585
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 57/581 (9%), Positives = 135/581 (23%), Gaps = 74/581 (12%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V +VG ++V S L + ++ G + R + V +L+ L++ + Q
Sbjct: 65 PVATVGDEQVTLDELNKS----LAALHERAGEDKTAGRKKYVT----VLNRLINSRLIVQ 116
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
E +GL P K + F L I + + +
Sbjct: 117 EAESMGL-----------EELPEVKQKLDDFPRMALKEELKDLQIKSLQPDATEVEKYYK 165
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
V + ++ + + ++N A +
Sbjct: 166 EAVKEWKIKSVKFEKEDDAKELARTVQAGGNFDELVNTLIDSGKATGTKEGEYVKARDLL 225
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ + V + I E + +P
Sbjct: 226 PQVANVVAGMRAGSVSPVIQVGPSYAIFKLE---------------------DVRYPAGN 264
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ + A +++ + + + A+ V
Sbjct: 265 AEAQDAAREQALAMKQIEALAAYNKSLTKKYAKINQKLLDKLDFEAAKPGFAQLLKDRRV 324
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN-QMRITKASEKVKEDYKRLEEFLALGTS 400
+ G V+++ S + F + + + + + +
Sbjct: 325 VVEIKGDKPITVADMAESLSQKFFHGIDEAIKGKRINEQKMSALYDIFYARLYLKEAKKL 384
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + K D G ++ I + + K +
Sbjct: 385 GIDKTGHYKDRIKDFKDSLLFGMFIQKVVAPEIKVSDDETKAYYNKHIGDYSTPELLRIK 444
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
G +E + + + + A +
Sbjct: 445 GLAF-------------TRKEYAEAAIDKLRKGTEYQWLQANAEGQAAK----------- 480
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF--KVTN 578
++ G + + R G + + G YV+ V
Sbjct: 481 -ESAGLLEFSPTPVTRN-----GLPEKMQEATAGGKAGEYRLYESPEGFFYVLLIQDVVP 534
Query: 579 SKVGPVQEKDK-FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+K P++ K + L ++ L+ Y V V
Sbjct: 535 AKPQPLENVQKVIVKKLFNAKLNQAVEEWGVKLRDAYKVQV 575
>gi|28209963|ref|NP_780907.1| peptidylprolyl isomerase [Clostridium tetani E88]
gi|46396876|sp|Q899I2|PRSA_CLOTE RecName: Full=Foldase protein prsA; Flags: Precursor
gi|28202398|gb|AAO34844.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium tetani
E88]
Length = 339
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/212 (11%), Positives = 79/212 (37%), Gaps = 8/212 (3%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS-- 59
++ ++ ++ + A +F ++ + + + S V VG++ +
Sbjct: 1 MKHLKNNTKKFTALLFALLFSMSIAGCNMIEKTPEAIEKSPVAKVGKKTITRGELDTYPI 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDK---KILDNLVSGATLDQFIEDIGLEADHGRVW 116
++L + ++ G ++ L + ++L+ ++ + + E++ + D+ +V
Sbjct: 61 LAEQLTKLKEQFGGDLSKNAEIKDQLIQFKSQVLEQMIQEEIVFEKSEEL--KVDNAKVE 118
Query: 117 GEI-ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
E+ F + + + D + L + G E+ + + +V V ++
Sbjct: 119 KEVEKNLKNFMDQGFQGNKDKYKEDLKKMGTTEESIKRFFKAQVITEEVSKQVVKDVKVD 178
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ + +V+ + +HV +
Sbjct: 179 DNTAKKHYEESKYTFTVNKPTFHAQHVLVKTE 210
>gi|254718001|ref|ZP_05179812.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
gi|265982948|ref|ZP_06095683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
gi|306839780|ref|ZP_07472581.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. NF 2653]
gi|264661540|gb|EEZ31801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. 83/13]
gi|306405135|gb|EFM61413.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. NF 2653]
Length = 331
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/242 (10%), Positives = 71/242 (29%), Gaps = 11/242 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + +++ ID+ + + K + + + L
Sbjct: 78 DQTAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERAL 137
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + D KE + +V+ VKT EE +
Sbjct: 138 HNEYFKNAIVDKISDADVRARYDKEIAAMPPQV------EVRARHILVKTKEEA-----E 186
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+++ + G F D+ K ++ + + F+ P+
Sbjct: 187 AIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPV 246
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ Y V ++ + + D+ + ++ ++ + L+ + D I++
Sbjct: 247 QTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEK 306
Query: 626 YL 627
+
Sbjct: 307 AM 308
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 37/215 (17%), Positives = 83/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+ +++A Y+K ++
Sbjct: 120 DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 179
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+ S LG F++ + + F+L
Sbjct: 180 KTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFTEGQMV-PEFEKAAFALKP 238
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 239 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 296
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 297 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 331
>gi|229512625|ref|ZP_04402094.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TMA 21]
gi|229350302|gb|EEO15253.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TMA 21]
Length = 431
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ K Q + L +++L+ L+
Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQNKQP-----LPQETVLREQVLEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ + K +
Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEFREQVRKEM 138
Score = 39.8 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 15/239 (6%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ +L L G +++ L D+ + +F
Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP---------TIFADQ 245
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKA 503
K + ++I + + EV + + + E +
Sbjct: 246 IKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQL 305
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKC 562
N+ V F ++ + + Q + + + Q+ + PV +
Sbjct: 306 NEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQI-S 364
Query: 563 FPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + + +V + K+K L + + + L++ V V
Sbjct: 365 EPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEV 423
>gi|169796158|ref|YP_001713951.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AYE]
gi|260555208|ref|ZP_05827429.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC
19606]
gi|169149085|emb|CAM86962.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AYE]
gi|260411750|gb|EEX05047.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC
19606]
Length = 441
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/404 (12%), Positives = 110/404 (27%), Gaps = 55/404 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + L VL S F+ V V + S +
Sbjct: 9 KHLKQFFKATTLAVLISS------SMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHE 62
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI------- 119
+ + V L ++LD L+ + ++ G++ D + +
Sbjct: 63 LQAQKKEVPP-----QQYLQFQVLDQLILRQAQLEQVKKYGIKPDEKSLNEAVLKVASQS 117
Query: 120 --ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
F K + + + + +R + +++SR + V S
Sbjct: 118 GSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQ 177
Query: 178 LL----------------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
D + + V + + + A+ S A +
Sbjct: 178 GQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMG 237
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDE----LQAEYEKNKEKYFSPEIRTVEQLVF 277
+ ++ + + + + IS + L+ K E+ ++
Sbjct: 238 FRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILI 297
Query: 278 PN---------QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
++ D ++ LK G+ F LA SLG + +
Sbjct: 298 QPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSNDTGSARDGGSLGWVTPGMMVPE- 356
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
D G+ + FG+ I V++ + + +
Sbjct: 357 -FDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDMTHEYQER 399
Score = 42.9 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 21/283 (7%), Positives = 80/283 (28%), Gaps = 5/283 (1%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I +F + + A E ++++
Sbjct: 155 QQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQ 214
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ ++ + + L +++ DG ++
Sbjct: 215 SNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLK 274
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + + + T + + E + + + + K G++F +
Sbjct: 275 LLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 334
Query: 527 SLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
+ + + + ++ PV + P + + + +VT+ + +
Sbjct: 335 DTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEI-SEPFQTQFGWHILQVTDKREKDMT 393
Query: 585 -QEKDKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +++ + +DS + +++ V + D + +
Sbjct: 394 HEYQERMARQILGERQFNTEIDSWLREVRANAYVEIKDPSLDK 436
>gi|15640472|ref|NP_230099.1| survival protein SurA [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121729954|ref|ZP_01682374.1| survival protein SurA [Vibrio cholerae V52]
gi|147674503|ref|YP_001218713.1| survival protein SurA [Vibrio cholerae O395]
gi|153823925|ref|ZP_01976592.1| survival protein SurA [Vibrio cholerae B33]
gi|227080656|ref|YP_002809207.1| survival protein SurA [Vibrio cholerae M66-2]
gi|229507084|ref|ZP_04396590.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae BX
330286]
gi|229508761|ref|ZP_04398253.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae B33]
gi|229519748|ref|ZP_04409191.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC9]
gi|229606260|ref|YP_002876908.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae MJ-1236]
gi|254850676|ref|ZP_05240026.1| chaperone surA precursor [Vibrio cholerae MO10]
gi|255743828|ref|ZP_05417785.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholera CIRS 101]
gi|262147181|ref|ZP_06027987.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae INDRE
91/1]
gi|262167591|ref|ZP_06035295.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC27]
gi|298501023|ref|ZP_07010824.1| survival protein SurA [Vibrio cholerae MAK 757]
gi|81788531|sp|Q9KUS0|SURA_VIBCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|9654869|gb|AAF93618.1| survival protein SurA [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121628294|gb|EAX60804.1| survival protein SurA [Vibrio cholerae V52]
gi|126518552|gb|EAZ75775.1| survival protein SurA [Vibrio cholerae B33]
gi|146316386|gb|ABQ20925.1| survival protein SurA [Vibrio cholerae O395]
gi|227008544|gb|ACP04756.1| survival protein SurA [Vibrio cholerae M66-2]
gi|227012299|gb|ACP08509.1| survival protein SurA [Vibrio cholerae O395]
gi|229344437|gb|EEO09412.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC9]
gi|229354164|gb|EEO19095.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae B33]
gi|229355829|gb|EEO20749.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae BX
330286]
gi|229368915|gb|ACQ59338.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae MJ-1236]
gi|254846381|gb|EET24795.1| chaperone surA precursor [Vibrio cholerae MO10]
gi|255738577|gb|EET93965.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholera CIRS 101]
gi|262023927|gb|EEY42624.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae RC27]
gi|262031386|gb|EEY49994.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae INDRE
91/1]
gi|297540271|gb|EFH76331.1| survival protein SurA [Vibrio cholerae MAK 757]
Length = 431
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ K Q + L +++L+ L+
Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQNKQP-----LPQETVLREQVLEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ + K +
Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEFREQVRKEM 138
Score = 39.8 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 15/239 (6%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ +L L G +++ L D+ + +F
Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP---------TIFADQ 245
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKA 503
K + ++I + + EV + + + E +
Sbjct: 246 IKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQL 305
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKC 562
N+ V F ++ + + Q + + + Q+ + PV +
Sbjct: 306 NEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQI-S 364
Query: 563 FPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + + +V + K+K L + + + L++ V V
Sbjct: 365 EPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEV 423
>gi|215919309|ref|NP_820955.2| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
burnetii RSA 493]
gi|206584194|gb|AAO91469.2| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii RSA 493]
Length = 321
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/280 (11%), Positives = 73/280 (26%), Gaps = 11/280 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + S ++ Q+ K++LD L+
Sbjct: 38 DQIVAVVNDEIITQSELNHALTAAKQQFMQRQ-----ISLPDQKTFKKQVLDQLIYQKLQ 92
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + ++ + + +AR + N S +L +EGI+ KE+ K L
Sbjct: 93 LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148
Query: 160 SRTDVVGMFVGGMRPSNL--LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ + + N + K+ + S +Y + + +
Sbjct: 149 IISKLQHQALQDTISINKSDIAAFQKQHAGQIASKEYHIATILIPLPASATQAQINHAKG 208
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + + + S EL + K K E+ Q
Sbjct: 209 KAALVLKQLQKGSSFETAMKMHPGSADLGWRSAKELPQVFVKTVLKMKPNEVTGPIQAPN 268
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
++ + + ++
Sbjct: 269 GFHIIKLLDKEAKNTVSDQQIQRIVYQQKVEKALQKWLTQ 308
>gi|261380640|ref|ZP_05985213.1| putative cis-trans isomerase [Neisseria subflava NJ9703]
gi|284796620|gb|EFC51967.1| putative cis-trans isomerase [Neisseria subflava NJ9703]
Length = 329
Score = 62.2 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/285 (6%), Positives = 66/285 (23%), Gaps = 10/285 (3%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V + + + Q + + + + L +++L +++ +
Sbjct: 52 SDGIAAVVDNEVITHRQVAQAVAQARQTMPK-------GTQMDANELRQQVLAQMINQSL 104
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + IA +P D+ S + + + +
Sbjct: 105 ILQAGKRRNIQATDSEIEAVIAHNPNIKNPSAAVRQDIADSIIVEKVRQQAIMQNSRVSD 164
Query: 159 LSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ G+ + D I + +
Sbjct: 165 SEVARYIEQAKQQGITLPEADPVRQYHAQHILIKADNDNAAVGAESTIRKIYSQARSGAD 224
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + + + + + + ++
Sbjct: 225 FGGLARQYSQDGSAGNGGDLGWFADGMMVAPFEEAVHKLKPGQISAPVRTQFGW--HIIK 282
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
N + ++ L++++ + + L D
Sbjct: 283 LNDVREAGTPEERQQNAVRQYLSQQKAQQATTNLLRELHSSSYVD 327
>gi|161830191|ref|YP_001595995.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
burnetii RSA 331]
gi|161762058|gb|ABX77700.1| putative peptidyl-prolyl cis-trans isomerase surA [Coxiella
burnetii RSA 331]
Length = 321
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/280 (11%), Positives = 73/280 (26%), Gaps = 11/280 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + S ++ Q+ K++LD L+
Sbjct: 38 DQIVAVVNDEIITQSELNHALTAAKQQFMQRQ-----ISLPDQKTFKKQVLDQLIYQKLQ 92
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + ++ + + +AR + N S +L +EGI+ KE+ K L
Sbjct: 93 LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148
Query: 160 SRTDVVGMFVGGMRPSNL--LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ + + N + K+ + S +Y + + +
Sbjct: 149 IISKLQHQALQDTISINKSDIAAFQKQHAGQIASKEYHIATILIPLPASATQAQINHAKG 208
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + + + S EL + K K E+ Q
Sbjct: 209 KAALILKQLQKGSSFETAMKMHPGSADLGWRSAKELPQVFVKTVLKMKPNEVTGPIQAPN 268
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
++ + + ++
Sbjct: 269 GFHIIKLLDKEAKNTVSDQQIQRIVYQQKVEKALQKWLTQ 308
>gi|294054384|ref|YP_003548042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coraliomargarita
akajimensis DSM 45221]
gi|293613717|gb|ADE53872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coraliomargarita
akajimensis DSM 45221]
Length = 330
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/273 (10%), Positives = 74/273 (27%), Gaps = 11/273 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
R+ V L++L ++ ++ G+ + + + + +
Sbjct: 5 RSLVQLSTLILLPCAAVLSSNGQSVNLQQLGNGIAAIAEGEIITVEQLRREVEPIIPRLR 64
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
+ + R R + +++L N++ + Q E+ GL + E +
Sbjct: 65 VEARTE-DEFRTRIDQISREVLQNMIDRIIIVQAAEEKGLLIPQSYIDQEYNQVLA---N 120
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
D F+ L +G+ +EY + K ++ + + + +
Sbjct: 121 DFGGDRARFLEYLKFQGLTPREYRETIRKRVTVDVMRQQNRKSQSEMSPERIEEFYVRNK 180
Query: 189 NRSVDYIVLNNRHVPAIADPSN------AVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
R ++ R + Q + + R
Sbjct: 181 LRFYQSESMHLRQIILTPMADESITLLRQTAKQVMSDLSEGADFGDTARKYSQDDMRRSG 240
Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
I +L+ E S +L
Sbjct: 241 GDWGWIERADLRTELSDAAFSLESGNYSQPIEL 273
Score = 40.6 bits (92), Expect = 0.80, Method: Composition-based stats.
Identities = 16/146 (10%), Positives = 44/146 (30%), Gaps = 4/146 (2%)
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ L + ++ + A Q++ + S EG +F D + +
Sbjct: 180 KLRFYQSESMHLRQIILTPMADESITLLRQTAKQVMSDLS-EGADFGDTARKYSQDDMRR 238
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF---KVTNSKVGPVQEKD 588
+ + E + FS G ++++ K + +D
Sbjct: 239 SGGDWGWIERADLRTELSDAAFSLESGNYSQPIELGGTIFILYCEEKRDEMIQPISEVRD 298
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQY 614
L + ++ + + L+++
Sbjct: 299 IIEDVLVGEIAREAQERWLEELRTKA 324
>gi|258623407|ref|ZP_05718411.1| survival protein SurA [Vibrio mimicus VM573]
gi|258584373|gb|EEW09118.1| survival protein SurA [Vibrio mimicus VM573]
Length = 431
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 51/140 (36%), Gaps = 9/140 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ V + + V V + S + K Q + E
Sbjct: 8 LISVISALTLFNAHAEPEQLDGVAVIVNSGVILQSDVDGALKTVKANAKQN-NQPLPQET 66
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L +++L+ L+ Q E IG++ D R+ I K+N+ + + +S
Sbjct: 67 V----LREQVLEKLIIDTLQQQEAERIGVKIDDNRLNDAIKEI----AKNNQQTQEQLIS 118
Query: 140 RLAREGINEKEYIDHYTKML 159
+A+EG+ E+ + K +
Sbjct: 119 SVAQEGLTYPEFREQVRKEM 138
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 28/261 (10%), Positives = 70/261 (26%), Gaps = 6/261 (2%)
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
+ D Q +I+ +V+E + + + E+ +
Sbjct: 164 ELLAQETDATVQYKISHIQLRVEEGQDKSKAESLANKLVGELKHGADFAQMAYTYSKGPK 223
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
G + +F K + ++I + + EV
Sbjct: 224 ALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEV 283
Query: 483 LTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
+ + + E + N+ V F ++ + + Q + +
Sbjct: 284 NARHILIKPTIILSDEGAQKQLNEFVQRIKNGEATFGELAQQYSQDPGSAAQKGELGYQT 343
Query: 542 KFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQM 597
+ Q+ PV + P + + + +V + K+K L
Sbjct: 344 PDLYVPEFKHQIEILPVGQI-SEPFQTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNR 402
Query: 598 MNKDLLDSVIAYLKSQYSVTV 618
+ + + L++ V V
Sbjct: 403 KFNEEASAWLQELRASAFVEV 423
>gi|153803547|ref|ZP_01958133.1| survival protein SurA [Vibrio cholerae MZO-3]
gi|297580585|ref|ZP_06942511.1| survival protein SurA [Vibrio cholerae RC385]
gi|124120914|gb|EAY39657.1| survival protein SurA [Vibrio cholerae MZO-3]
gi|297535001|gb|EFH73836.1| survival protein SurA [Vibrio cholerae RC385]
Length = 431
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ K Q + L +++L+ L+
Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQNKQP-----LPQETVLREQVLEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ + K +
Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEFREQVRKEM 138
Score = 39.5 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 15/239 (6%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ +L L G +++ L D+ + +F
Sbjct: 195 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP---------TIFADQ 245
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKA 503
K + ++I + + EV + + + E +
Sbjct: 246 IKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQL 305
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKC 562
N+ V F ++ + + Q + + + Q+ + PV +
Sbjct: 306 NEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQI-S 364
Query: 563 FPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + + +V + K+K L + + + L++ V V
Sbjct: 365 EPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEV 423
>gi|306842909|ref|ZP_07475545.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO2]
gi|306286932|gb|EFM58452.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. BO2]
Length = 331
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/242 (10%), Positives = 71/242 (29%), Gaps = 11/242 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + +++ ID+ + + K + + + L
Sbjct: 78 DQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERAL 137
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + D KE + +V+ VKT EE +
Sbjct: 138 HNEYFKNAIVDKISDADVRARYDKEIAAMPPQV------EVRARHILVKTKEEA-----E 186
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+++ + G F D+ K ++ + + F+ P+
Sbjct: 187 AIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFTEGQMVPEFEKAAFALKPGEYTKEPV 246
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ Y V ++ + + D+ + ++ ++ + L+ + D I++
Sbjct: 247 QTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEK 306
Query: 626 YL 627
+
Sbjct: 307 AM 308
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 37/215 (17%), Positives = 83/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+ +++A Y+K ++
Sbjct: 120 DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 179
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+ S LG F++ + + F+L
Sbjct: 180 KTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFTEGQMV-PEFEKAAFALKP 238
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 239 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 296
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 297 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 331
>gi|319649925|ref|ZP_08004075.1| hypothetical protein HMPREF1013_00680 [Bacillus sp. 2_A_57_CT2]
gi|317398363|gb|EFV79051.1| hypothetical protein HMPREF1013_00680 [Bacillus sp. 2_A_57_CT2]
Length = 254
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 47/145 (32%), Gaps = 2/145 (1%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
TV V Q++ + + M Q + A + ++ LD+LV L
Sbjct: 64 EKTVAIVNDQEILGREYNSVLTSSQMMYQQMGQDPTTKDAADK--IKEQTLDSLVGQTLL 121
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G +A V ++ + D +F + + L + + ++ +
Sbjct: 122 LQEADKKGYKASDEEVKKQLEETKGQFKDDKEFETAMKQAGLNPDSLEKEIANNIKYTKY 181
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKR 184
++ V + A +
Sbjct: 182 INGEIKPGEVTDAEIQKFYDEYASQ 206
>gi|256059916|ref|ZP_05450102.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
5K33]
gi|261323889|ref|ZP_05963086.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
5K33]
gi|261299869|gb|EEY03366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella neotomae
5K33]
Length = 328
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/158 (9%), Positives = 52/158 (32%), Gaps = 3/158 (1%)
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ D+++ + V+ + + +A ++ + + G F D+ K
Sbjct: 151 DVRARYDKEIAAMPPQVE--VRARHILVKTKEEAEAIIKKL-EGGAKFEDLAKASSTDGT 207
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
++ + + F+ P++ Y V ++ + + D+
Sbjct: 208 ASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQ 267
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ ++ ++ + L+ + D I++ +
Sbjct: 268 VKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEKAM 305
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 37/215 (17%), Positives = 82/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ + + + +IS+ +++A Y+K ++
Sbjct: 117 DQTKEFKDRMEFLCERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 176
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+ S LG FS+ + + F+L
Sbjct: 177 KTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKP 235
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 236 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 293
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 294 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 328
>gi|239502210|ref|ZP_04661520.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB900]
Length = 436
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/404 (12%), Positives = 110/404 (27%), Gaps = 55/404 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + L VL S F+ V V + S +
Sbjct: 4 KHLKQFFKATTLAVLISS------SMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHE 57
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI------- 119
+ + V L ++LD L+ + ++ G++ D + +
Sbjct: 58 LQAQKKEVPP-----QQYLQFQVLDQLILRQAQLEQVKKYGIKPDEKSLNEAVLKVASQS 112
Query: 120 --ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
F K + + + + +R + +++SR + V S
Sbjct: 113 GSKSLEAFQQKFDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQ 172
Query: 178 LL----------------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
D + + V + N + A+ S A +
Sbjct: 173 GQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQNNDLNALKKLSTATVKVEGADMG 232
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDE----LQAEYEKNKEKYFSPEIRTVEQLVF 277
+ ++ + + + + IS + L+ K E+ ++
Sbjct: 233 FRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILI 292
Query: 278 PN---------QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
++ D ++ LK G+ F LA SLG + +
Sbjct: 293 QPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSNDTGSARDGGSLGWVTPGMMVPE- 351
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
D G+ + FG+ I V++ + + +
Sbjct: 352 -FDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDMTHEYQER 394
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 21/283 (7%), Positives = 80/283 (28%), Gaps = 5/283 (1%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I +F + + A E ++++
Sbjct: 150 QQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQ 209
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ ++ + + L +++ DG ++
Sbjct: 210 NNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLK 269
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + + + T + + E + + + + K G++F +
Sbjct: 270 LLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 329
Query: 527 SLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
+ + + + ++ PV + P + + + +VT+ + +
Sbjct: 330 DTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEI-SEPFQTQFGWHILQVTDKREKDMT 388
Query: 585 -QEKDKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +++ + +DS + +++ V + D + +
Sbjct: 389 HEYQERMARQILGERQFNTEIDSWLREVRANAYVEIKDPSLDK 431
>gi|153217229|ref|ZP_01950993.1| survival protein SurA [Vibrio cholerae 1587]
gi|153830824|ref|ZP_01983491.1| survival protein SurA [Vibrio cholerae 623-39]
gi|229519985|ref|ZP_04409414.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TM
11079-80]
gi|229525138|ref|ZP_04414543.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae bv.
albensis VL426]
gi|124113752|gb|EAY32572.1| survival protein SurA [Vibrio cholerae 1587]
gi|148873683|gb|EDL71818.1| survival protein SurA [Vibrio cholerae 623-39]
gi|229338719|gb|EEO03736.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae bv.
albensis VL426]
gi|229342934|gb|EEO07923.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae TM
11079-80]
Length = 431
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ K Q + L +++L+ L+
Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQNKQP-----LPQETVLREQVLEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ + K +
Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEFREQVRKEM 138
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 15/239 (6%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ +L L G +++ L D+ + +F
Sbjct: 195 ETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP---------TIFADQ 245
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKA 503
K + ++I + + EV + + + E +
Sbjct: 246 IKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQL 305
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKC 562
N+ V F ++ + + Q + + + Q+ + PV +
Sbjct: 306 NEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQI-S 364
Query: 563 FPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + + +V + K+K L + + + L++ V V
Sbjct: 365 EPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEV 423
>gi|258627055|ref|ZP_05721853.1| survival protein SurA [Vibrio mimicus VM603]
gi|258580729|gb|EEW05680.1| survival protein SurA [Vibrio mimicus VM603]
Length = 431
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + K Q + E L +++L+ L+
Sbjct: 28 DGVAVIVNSGVILQSDVDGALKTVKANAKQN-NQPLPQETV----LREQVLEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E IG++ D R+ I K+N+ + + +S +A+EG+ E+ + K +
Sbjct: 83 QQEAERIGVKIDDNRLNDAIKEI----AKNNQQTQEQLISSVAQEGLTYPEFREQVRKEM 138
Score = 38.7 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 29/261 (11%), Positives = 70/261 (26%), Gaps = 6/261 (2%)
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
+ D Q +I+ +V+E + E + E+ +
Sbjct: 164 ELLAQETDATVQYKISHIQLRVEEGQDKSEAESLANKLVGELKHGADFAQMAYTYSKGPK 223
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
G + +F K + ++I + + EV
Sbjct: 224 ALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEV 283
Query: 483 LTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
+ + + E + N+ V F ++ + + Q + +
Sbjct: 284 NARHILIKPTIILSDEGAQKQLNEFVQRIKNGEATFGELAQQYSQDPGSAAQKGELGYQT 343
Query: 542 KFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQM 597
+ Q+ PV + P + + + +V + K+K L
Sbjct: 344 PDLYVPEFKHQIEILPVGQI-SEPFQTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNR 402
Query: 598 MNKDLLDSVIAYLKSQYSVTV 618
+ + + L++ V V
Sbjct: 403 KFNEEASAWLQELRASAFVEV 423
>gi|326790698|ref|YP_004308519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
lentocellum DSM 5427]
gi|326541462|gb|ADZ83321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
lentocellum DSM 5427]
Length = 352
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/175 (8%), Positives = 43/175 (24%), Gaps = 7/175 (4%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
S + + + +V ++ + + G +L L++
Sbjct: 45 SEAAKTVLATVNGVEILQGDLDKVYNSMVAEYQSYYGESEEMLTFLKQQ-KPGLLTGLIN 103
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
L Q +++ + V + + + + + G + Y
Sbjct: 104 RELLKQKAKELNITCTDEEVEKI------YSDLVSTYGEEQVQEVIKANGFTTETYKAQI 157
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ + + V G + + N H+ ++
Sbjct: 158 KEDEALSKVQEKMQEGEIKVTDEDVKKYYDENIDSFTTGAGANMEHILVKVADTD 212
>gi|332534336|ref|ZP_08410179.1| survival protein SurA precursor [Pseudoalteromonas haloplanktis
ANT/505]
gi|332036246|gb|EGI72719.1| survival protein SurA precursor [Pseudoalteromonas haloplanktis
ANT/505]
Length = 431
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/170 (11%), Positives = 48/170 (28%), Gaps = 9/170 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + + S + ++ G + + L + ++ LV+ A +
Sbjct: 28 DKVIGVVNQGVILKSEVDTIIDRVKKQAQEQ-GQQLPKDET----LRVQAVERLVNQALM 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E +GL+ ++ +A G + G + + Y + K +
Sbjct: 83 MQMAERMGLQISDSQLDQTLANMAKEQGGTI----ADLRRTIEGSGESFQAYREEIRKEI 138
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
+ V V + E + + H+
Sbjct: 139 TTQQVTRASVDRRIYISEQEVDNLLKIMETQGQSAEEYDIGHILIDIPND 188
>gi|91203827|emb|CAJ71480.1| similar to peptidyl-prolyl cis-trans isomerase (survival protein
SurA precursor) [Candidatus Kuenenia stuttgartiensis]
Length = 333
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/171 (12%), Positives = 54/171 (31%), Gaps = 10/171 (5%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
V ++ + + + ++ + +R S ++K+I+D LV+
Sbjct: 49 GDSKKVVATINGESITKAEVERVLERFKNQL--------PPDRIAS--VEKQIIDGLVAQ 98
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
QFI+ + + E+ + + L G N ++ T
Sbjct: 99 KLFLQFIKKNKIAIGDDALKTELDKVREDIKLNPGLQGKSLEEVLESHGSNIEDLKRDIT 158
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
LS V + + + + +I+++ R++ D
Sbjct: 159 ISLSLEKYFADTVSDAKVKDYFEKNRQIYDGTEVQASHILVDTRNLQGEED 209
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/194 (14%), Positives = 62/194 (31%), Gaps = 13/194 (6%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMW-----VQIKESIPARDRKLEEVLTDVKKDWK 491
E++L + L +D T++L Y ++K+ + +
Sbjct: 140 EEVLESHGSNIEDLKRDITISLSLEKYFADTVSDAKVKDYFEKNRQIYDGTEVQASHILV 199
Query: 492 T------VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-F 544
+ + K ++ E ++ K+F + + + + K
Sbjct: 200 DTRNLQGEEDLAKAKQKIEKVKAEIAEGKKDFAKLAEEYSDCPSSKKGGDLGYFVRKGQM 259
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD 604
F+ V V Y + KVT+ K G + ++ + + K D
Sbjct: 260 VEPFAEAAFALKVGEVSDVVTTQ-FGYHIIKVTDIKKGGEIDFNELKPEIKLDILKQNAD 318
Query: 605 SVIAYLKSQYSVTV 618
S++ LK Q + +
Sbjct: 319 SLLDRLKQQAKIEI 332
>gi|298506467|gb|ADI85190.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
sulfurreducens KN400]
Length = 351
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/274 (12%), Positives = 81/274 (29%), Gaps = 26/274 (9%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
+ + + +++EE E+ + ++ +D ++
Sbjct: 77 RAKKVLMSQNRMTQPMTPDIAQKVEEAAVSQLIAKELLYQAG-RKQEIKDLDKQVQERVS 135
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
+ A P +E+ L + D T A D + KE + E+
Sbjct: 136 QSKARFPSQEEYLKTLKSMDMTEKDVETFAREDLVINNLIEKEVVAKTTVSDEDAKKFYN 195
Query: 488 KDWKTVKTAEEVSS--------------------KANQLVLEYSKEGKNFRDIGKNLGAS 527
+ K E V + + + +L+ K G +F ++ K
Sbjct: 196 DNIDKFKRDETVKASHILIKVEPNASADDKKKAKEKAEAILKQVKGGADFAEVAKKESGC 255
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---- 583
+ F+ V +E Y + K+T+ +
Sbjct: 256 PSAPQGGDLGFFGKGQMVPPFEKAAFAMKPGEV-SDVVETQFGYHIIKLTDKRPAETVKF 314
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ KD+ + +L Q ++ ++ + LK +
Sbjct: 315 EETKDRIVQFLKQQKVQEGINEYVENLKKAAKIE 348
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/168 (10%), Positives = 56/168 (33%), Gaps = 9/168 (5%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
VV V + + + K + ++ + + A+ +++ + L++ L Q
Sbjct: 61 VVVKVNGVAITRAEVDRAKKVLMSQ--NRMTQPMTPDIAQK--VEEAAVSQLIAKELLYQ 116
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
++ +V +++S S + ++ L + EK+ + L
Sbjct: 117 AGRKQEIKDLDKQVQERVSQSKARFP-----SQEEYLKTLKSMDMTEKDVETFAREDLVI 171
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
+++ V + + ++ + H+ +P+
Sbjct: 172 NNLIEKEVVAKTTVSDEDAKKFYNDNIDKFKRDETVKASHILIKVEPN 219
>gi|213157107|ref|YP_002319152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acinetobacter
baumannii AB0057]
gi|215483612|ref|YP_002325833.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
AB307-0294]
gi|301345175|ref|ZP_07225916.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB056]
gi|301511287|ref|ZP_07236524.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB058]
gi|332851812|ref|ZP_08433737.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
gi|332865808|ref|ZP_08436592.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
gi|193077182|gb|ABO11972.2| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC
17978]
gi|213056267|gb|ACJ41169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acinetobacter
baumannii AB0057]
gi|213989120|gb|ACJ59419.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii
AB307-0294]
gi|332729819|gb|EGJ61154.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013150]
gi|332735020|gb|EGJ66105.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6013113]
Length = 436
Score = 61.8 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/404 (12%), Positives = 110/404 (27%), Gaps = 55/404 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + L VL S F+ V V + S +
Sbjct: 4 KHLKQFFKATTLAVLISS------SMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHE 57
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI------- 119
+ + V L ++LD L+ + ++ G++ D + +
Sbjct: 58 LQAQKKEVPP-----QQYLQFQVLDQLILRQAQLEQVKKYGIKPDEKSLNEAVLKVASQS 112
Query: 120 --ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
F K + + + + +R + +++SR + V S
Sbjct: 113 GSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQ 172
Query: 178 LL----------------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
D + + V + + + A+ S A +
Sbjct: 173 GQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMG 232
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDE----LQAEYEKNKEKYFSPEIRTVEQLVF 277
+ ++ + + + + IS + L+ K E+ ++
Sbjct: 233 FRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILI 292
Query: 278 PN---------QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
++ D ++ LK G+ F LA SLG + +
Sbjct: 293 QPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSNDTGSARDGGSLGWVTPGMMVPE- 351
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
D G+ + FG+ I V++ + + +
Sbjct: 352 -FDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDMTHEYQER 394
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 21/283 (7%), Positives = 80/283 (28%), Gaps = 5/283 (1%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I +F + + A E ++++
Sbjct: 150 QQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQ 209
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ ++ + + L +++ DG ++
Sbjct: 210 SNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLK 269
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + + + T + + E + + + + K G++F +
Sbjct: 270 LLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 329
Query: 527 SLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
+ + + + ++ PV + P + + + +VT+ + +
Sbjct: 330 DTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEI-SEPFQTQFGWHILQVTDKREKDMT 388
Query: 585 -QEKDKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +++ + +DS + +++ V + D + +
Sbjct: 389 HEYQERMARQILGERQFNTEIDSWLREVRANAYVEIKDPSLDK 431
>gi|325851854|ref|ZP_08171019.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A]
gi|325484696|gb|EGC87609.1| PPIC-type PPIASE domain protein [Prevotella denticola CRIS 18C-A]
Length = 474
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 57/423 (13%), Positives = 116/423 (27%), Gaps = 43/423 (10%)
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK--EKYFSPE 268
L + +++ E K + ++ A
Sbjct: 79 DTLPAFRKEFLGYRNQQIRPAFITDADVEDEARKIYRDTKQQIDANGGLWHCAHILIGMG 138
Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
T ++ ++ AD + +L++G F LA+ + L K +
Sbjct: 139 QHTSKEEEAAARQLADSIYTALQRGADFANLAKRYSTDTSSAKNGGDLPRLQKGQTV--A 196
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ K G+ + + FGY I + + ++ DI + + +++
Sbjct: 197 EFEKAMLTLKPGETSRPMLSPFGYHIIRMIGH--ESLPPYDSLRADIMQYIEMRGLRDQI 254
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
E K+ ++ D + Y + LL
Sbjct: 255 INQRLDSLVQAGGKDITQEQILDRKLAELEEKDADL--------KHLIREYHDGLLMVEM 306
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
K +Y K+ A R A V KA+
Sbjct: 307 SNRTVWDKVAKDETALEAYFRKHRKQYKWAEPRFKG--------------IAYHVKKKAD 352
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF----GYDGISQVFSGPVEMV 560
++ +G F + L + I R+ E F +VF +
Sbjct: 353 VDAVKECVKGLPFSKWAERLRNTFNKDGNI-RIRVEKGIFRKGDNALIDREVFGQKATVA 411
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
Y + V K+ +E D + ++L S +A L+ +Y V +
Sbjct: 412 PV------EGYPIDAVFGKKIKAPEELDDVRDLVISNCQEELEKSWVAALRRKYKVVIDK 465
Query: 621 NLI 623
++
Sbjct: 466 AVL 468
>gi|299770418|ref|YP_003732444.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. DR1]
gi|298700506|gb|ADI91071.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. DR1]
Length = 436
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 49/404 (12%), Positives = 104/404 (25%), Gaps = 55/404 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + L L S F+ V V + S +
Sbjct: 4 KHLKQFFKATTLAALISS------SMHSFAQPADEVVAIVDNSVILKSDLQQGMAEAAHE 57
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI------- 119
+ + V L ++LD L+ + ++ G++ D + +
Sbjct: 58 LQAQKKEVPP-----QQYLQFQVLDQLILREAQLEQVKKYGIKPDEKSLNEAVLKVASQS 112
Query: 120 --ARSPLFHGKDNKFSHDVFV------------SRLAREGINEKEYIDHYTKMLSRTDVV 165
F K + + + SRL ++ + + I
Sbjct: 113 GSKSLEAFQQKLDAMAPGTYESLRGRIAEDLAISRLRQQQVMSRIKISDQDVENFLKSPQ 172
Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
G G + + + E +SV V + + + T + +
Sbjct: 173 GQAALGNQAHVIHMRITGDNPQEVQSVAQEVRSKLAQSNDINVLKKLSTANAKVDGADMG 232
Query: 226 APEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPEIRTVEQLVF 277
I L ++ + ++ L+ K E+ ++
Sbjct: 233 FRPLSDIPAELAARITPLQEGQTTDLISVRDGVHVLKLIERKQNEQKALVPQYQTRHILI 292
Query: 278 PN---------QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
++ D ++ LK G F LA SLG + +
Sbjct: 293 QPSEVVSLDNAKQIIDNIYKRLKAGDDFATLAATYSNDTGSARDGGSLGWVTPGMMVPE- 351
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
D G+ + FG+ I V+ + + +
Sbjct: 352 -FDKKMQEIPVGEISEPFQTQFGWHILQVTEKREKDMTHEYQER 394
Score = 40.6 bits (92), Expect = 0.78, Method: Composition-based stats.
Identities = 24/283 (8%), Positives = 78/283 (27%), Gaps = 5/283 (1%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I +F + + A E ++++
Sbjct: 150 QQQVMSRIKISDQDVENFLKSPQGQAALGNQAHVIHMRITGDNPQEVQSVAQEVRSKLAQ 209
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
I + A D + L +++ DG ++
Sbjct: 210 SNDINVLKKLSTANAKVDGADMGFRPLSDIPAELAARITPLQEGQTTDLISVRDGVHVLK 269
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
I+ + + + T + + + + + + + K G +F +
Sbjct: 270 LIERKQNEQKALVPQYQTRHILIQPSEVVSLDNAKQIIDNIYKRLKAGDDFATLAATYSN 329
Query: 527 SLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
+ + + + ++ PV + P + + + +VT + +
Sbjct: 330 DTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEI-SEPFQTQFGWHILQVTEKREKDMT 388
Query: 585 -QEKDKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +++ + +DS + +++ V + D + +
Sbjct: 389 HEYQERMARQILGERQFNTEIDSWLREVRANAYVEIKDPSLDK 431
>gi|262403929|ref|ZP_06080486.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC586]
gi|262349891|gb|EEY99027.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC586]
Length = 431
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ K Q + L +++L+ L+
Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQNKQP-----LPQETVLREQVLEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ + K +
Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEFREQIRKEM 138
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 15/239 (6%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ +L L G +++ L D+ + +F
Sbjct: 195 ETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP---------TIFADQ 245
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKA 503
K + ++I + + EV + + + E +
Sbjct: 246 IKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQL 305
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKC 562
N+ V F ++ + + Q + + + Q+ + PV +
Sbjct: 306 NEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQI-S 364
Query: 563 FPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + + +V + K+K L + + + L++ V V
Sbjct: 365 EPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEV 423
>gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isomerase [Herbaspirillum seropedicae
SmR1]
gi|300074343|gb|ADJ63742.1| peptidyl-prolyl cis-trans isomerase protein [Herbaspirillum
seropedicae SmR1]
Length = 258
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 1/118 (0%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
A ++ + K G F D+ K + N + F + +
Sbjct: 142 KEDAEAIIAKL-KAGTKFEDLAKQSKDTGSAANGGDLDWATPASFVKPFSDAMVALKKGE 200
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V P++ + V K+ + + V D+ + + + + L + L+++ V
Sbjct: 201 VTPTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEALQQKKLQAYQEQLRAKAKVQ 258
Score = 41.0 bits (93), Expect = 0.62, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 17/92 (18%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+L + F I + + V + +P S KQ +
Sbjct: 8 LLVLLFAIASIPAFA------QNLAVVNGKAIPSSRAELMVKQMTAQ-----------GQ 50
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
S L I + L++ L Q + GL
Sbjct: 51 PDSPQLRGAIKEELINREILMQEADKQGLANS 82
>gi|225076364|ref|ZP_03719563.1| hypothetical protein NEIFLAOT_01408 [Neisseria flavescens
NRL30031/H210]
gi|224952307|gb|EEG33516.1| hypothetical protein NEIFLAOT_01408 [Neisseria flavescens
NRL30031/H210]
Length = 329
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/285 (6%), Positives = 65/285 (22%), Gaps = 10/285 (3%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V + + + Q + + + + L +++L +++ +
Sbjct: 52 SDGIAAVVDNEVITHRQVAQAVAQARQTMPK-------GTQMDANELRQQVLAQMINQSL 104
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + IA +P D+ S + + + +
Sbjct: 105 ILQAGKRRNIQATDSEIEAVIAHNPNIKNPSAAVRQDIADSIIVEKVRQQAIMQNSRVSD 164
Query: 159 LSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ G+ + D I +
Sbjct: 165 SEVARYIEQAKQQGVTLPEADPVRQYHAQHILIKADNDNAAVGAESTIRKIYTQARSGAD 224
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + + + + + + ++
Sbjct: 225 FGGLARQYSQDSSAGNGGDLGWFADGMMVAPFEEAVHKLKPGQISAPVRTQFGW--HIIK 282
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
N + ++ L++++ + + L D
Sbjct: 283 LNDVREAGTPEERQQNAVRQYLSQQKAQQATTNLLRELHSSSYVD 327
>gi|148558977|ref|YP_001259765.1| peptidyl-prolyl cis-trans isomerase [Brucella ovis ATCC 25840]
gi|148370234|gb|ABQ60213.1| peptidyl-prolyl cis-trans isomerase [Brucella ovis ATCC 25840]
Length = 331
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/242 (10%), Positives = 71/242 (29%), Gaps = 11/242 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + +++ ID+ + + K + + + L
Sbjct: 78 DQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERAL 137
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + D KE + +V+ VKT EE +
Sbjct: 138 HNEYFKNAIVDKISDADVRARYDKEIAAMPPQV------EVRARHILVKTKEEA-----E 186
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+++ + G F D+ K ++ + + F+ P+
Sbjct: 187 AIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPV 246
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ Y V ++ + + D+ + ++ ++ + L+ + D I++
Sbjct: 247 QTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEK 306
Query: 626 YL 627
+
Sbjct: 307 AM 308
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 83/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+ +++A Y+K ++
Sbjct: 120 DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 179
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+ S LG FS+ + + F+L
Sbjct: 180 KTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKP 238
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 239 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 296
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 297 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 331
>gi|23502793|ref|NP_698920.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330]
gi|163843966|ref|YP_001628370.1| parvulin-like PPIase precursor [Brucella suis ATCC 23445]
gi|23348814|gb|AAN30835.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330]
gi|163674689|gb|ABY38800.1| Parvulin-like PPIase precursor [Brucella suis ATCC 23445]
Length = 331
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/242 (10%), Positives = 71/242 (29%), Gaps = 11/242 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + +++ ID+ + + K + + + L
Sbjct: 78 DQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERAL 137
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + D KE + +V+ VKT EE +
Sbjct: 138 HNEYFKNAIVDKISDADVRARYDKEIAAMPPQV------EVRARHILVKTKEEA-----E 186
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+++ + G F D+ K ++ + + F+ P+
Sbjct: 187 AIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPV 246
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ Y V ++ + + D+ + ++ ++ + L+ + D I++
Sbjct: 247 QTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEK 306
Query: 626 YL 627
+
Sbjct: 307 AM 308
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 83/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+ +++A Y+K ++
Sbjct: 120 DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 179
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+ S LG FS+ + + F+L
Sbjct: 180 KTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKP 238
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 239 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 296
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 297 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 331
>gi|330505263|ref|YP_004382132.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
mendocina NK-01]
gi|328919549|gb|AEB60380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
mendocina NK-01]
Length = 432
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S ++ I ++ G + E L +++L+ L+
Sbjct: 33 DRVVAIVDNDVVMQSQLDARLREVQQTIDKR-GGALPPEHV----LSQQVLERLIIENIQ 87
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G+ + + + N S + F LAR+G++ + D + +
Sbjct: 88 LQIGDRSGIRITDEELNQAMGTI----AQRNGMSLEQFRDALARDGLSYADARDQVRREM 143
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 144 IISRVRQRRVA 154
>gi|197124443|ref|YP_002136394.1| DSBA oxidoreductase [Anaeromyxobacter sp. K]
gi|196174292|gb|ACG75265.1| DSBA oxidoreductase [Anaeromyxobacter sp. K]
Length = 348
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/237 (8%), Positives = 67/237 (28%), Gaps = 7/237 (2%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ S+ V VG Q + K +L + Q+ + L ++ L++++
Sbjct: 30 NPSAPVAKVGGQAITTGELDELVKSDLKQLEQQY-------EEQKYQLKRQGLESMIRRR 82
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ + G+ D +A+ P + + ++ + + ++ D
Sbjct: 83 VFEAKAKAEGITPDELVNRDVVAKIPEPADDEVRALYERAKAGGQQLPPIDQVKPDIARF 142
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ ++ + + + + + V+ P A + + +
Sbjct: 143 IKNQKAQAELTSYYEKLKKDMNVEVLLPAYMPPKVEVAATGPSKGPNDAPITIVEFSDFQ 202
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
+ ++ V + + + +L + +
Sbjct: 203 CPFCVRAEPTVKDVMAAYPGKVRVVYRDFPLPSHDLAPKAAEAAHCAGDQGKYWEMH 259
>gi|307546074|ref|YP_003898553.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
DSM 2581]
gi|307218098|emb|CBV43368.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halomonas elongata
DSM 2581]
Length = 213
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 46/180 (25%), Gaps = 9/180 (5%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
G+ V V + S + + + G V + L +
Sbjct: 20 VGVMAQDARQPLDRIVAVVNEGAIMNSQLEERVARTRAQMEAQ-GVEVPPDDV----LRQ 74
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++LD LV Q + L D + ++ ++N + + F L +G++
Sbjct: 75 QVLDRLVIEEIQLQMAREANLSVDDTELNRQVRAI----AQNNDMTLEQFADALEADGLS 130
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
D + L + VG + D
Sbjct: 131 LGVVRDQVRRELLMRQIQQRRVGSRVSISEAEVNRFIEQQGGNVTAEQARQALFQRKAND 190
>gi|225853381|ref|YP_002733614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
ATCC 23457]
gi|254694570|ref|ZP_05156398.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
3 str. Tulya]
gi|254700583|ref|ZP_05162411.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
str. 513]
gi|254707533|ref|ZP_05169361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
pinnipedialis M163/99/10]
gi|254713643|ref|ZP_05175454.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
M644/93/1]
gi|254716003|ref|ZP_05177814.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
M13/05/1]
gi|256045546|ref|ZP_05448429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
bv. 1 str. Rev.1]
gi|256112274|ref|ZP_05453195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
bv. 3 str. Ether]
gi|256158440|ref|ZP_05456338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
M490/95/1]
gi|256253860|ref|ZP_05459396.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
gi|256263138|ref|ZP_05465670.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
bv. 2 str. 63/9]
gi|256370345|ref|YP_003107856.1| peptidyl-prolyl cis-trans isomerase [Brucella microti CCM 4915]
gi|260169365|ref|ZP_05756176.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
gi|260562856|ref|ZP_05833342.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
bv. 1 str. 16M]
gi|261214896|ref|ZP_05929177.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
3 str. Tulya]
gi|261217772|ref|ZP_05932053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
M13/05/1]
gi|261220998|ref|ZP_05935279.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
gi|261315013|ref|ZP_05954210.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
pinnipedialis M163/99/10]
gi|261321380|ref|ZP_05960577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
M644/93/1]
gi|261751092|ref|ZP_05994801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
str. 513]
gi|261758885|ref|ZP_06002594.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
gi|265991973|ref|ZP_06104530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
bv. 1 str. Rev.1]
gi|265993706|ref|ZP_06106263.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
bv. 3 str. Ether]
gi|265996958|ref|ZP_06109515.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
M490/95/1]
gi|294851184|ref|ZP_06791857.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. NVSL
07-0026]
gi|225641746|gb|ACO01660.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
ATCC 23457]
gi|256000508|gb|ACU48907.1| peptidyl-prolyl cis-trans isomerase [Brucella microti CCM 4915]
gi|260152872|gb|EEW87964.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
bv. 1 str. 16M]
gi|260916503|gb|EEX83364.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
3 str. Tulya]
gi|260919582|gb|EEX86235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti B1/94]
gi|260922861|gb|EEX89429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
M13/05/1]
gi|261294070|gb|EEX97566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
M644/93/1]
gi|261304039|gb|EEY07536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
pinnipedialis M163/99/10]
gi|261738869|gb|EEY26865.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. F5/99]
gi|261740845|gb|EEY28771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 5
str. 513]
gi|262551426|gb|EEZ07416.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella ceti
M490/95/1]
gi|262764687|gb|EEZ10608.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
bv. 3 str. Ether]
gi|263003039|gb|EEZ15332.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
bv. 1 str. Rev.1]
gi|263093040|gb|EEZ17190.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
bv. 2 str. 63/9]
gi|294819773|gb|EFG36772.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella sp. NVSL
07-0026]
gi|326409944|gb|ADZ67009.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
M28]
gi|326539657|gb|ADZ87872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
M5-90]
Length = 331
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/242 (10%), Positives = 71/242 (29%), Gaps = 11/242 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + +++ ID+ + + K + + + L
Sbjct: 78 DQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERAL 137
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + D KE + +V+ VKT EE +
Sbjct: 138 HNEYFKNAIVDKISDADVRARYDKEIAAMPPQV------EVRARHILVKTKEEA-----E 186
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+++ + G F D+ K ++ + + F+ P+
Sbjct: 187 AIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPV 246
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ Y V ++ + + D+ + ++ ++ + L+ + D I++
Sbjct: 247 QTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEK 306
Query: 626 YL 627
+
Sbjct: 307 AM 308
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 83/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+ +++A Y+K ++
Sbjct: 120 DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 179
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+ S LG FS+ + + F+L
Sbjct: 180 KTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKP 238
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 239 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 296
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 297 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 331
>gi|153827415|ref|ZP_01980082.1| survival protein SurA [Vibrio cholerae MZO-2]
gi|149738658|gb|EDM53001.1| survival protein SurA [Vibrio cholerae MZO-2]
Length = 431
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ K Q + L +++L+ L+
Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQNKQP-----LPQETVLREQVLEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ + K +
Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEFREQVRKEM 138
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 26/261 (9%), Positives = 70/261 (26%), Gaps = 6/261 (2%)
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
+ D Q +I+ +V + + ++++ +
Sbjct: 164 ELLAQETDATVQYKISHIQLRVDDGQDKNAAETLANKLVNDLKNGADFAQMAYAYSKGPK 223
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
G + +F K + ++I + + EV
Sbjct: 224 ALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEV 283
Query: 483 LTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
+ + + E + N+ V F ++ + + Q + +
Sbjct: 284 NARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQT 343
Query: 542 KFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQM 597
+ Q+ + PV + P + + + +V + K+K L
Sbjct: 344 PDLYVPEFKHQIETLPVGQI-SEPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNR 402
Query: 598 MNKDLLDSVIAYLKSQYSVTV 618
+ + + L++ V V
Sbjct: 403 KFNEEASAWLQELRASAFVEV 423
>gi|17986407|ref|NP_539041.1| peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str.
16M]
gi|62290796|ref|YP_222589.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str.
9-941]
gi|82700707|ref|YP_415281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
biovar Abortus 2308]
gi|189025011|ref|YP_001935779.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
S19]
gi|254696195|ref|ZP_05158023.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
2 str. 86/8/59]
gi|254731113|ref|ZP_05189691.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
4 str. 292]
gi|260546060|ref|ZP_05821800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
NCTC 8038]
gi|260758847|ref|ZP_05871195.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
4 str. 292]
gi|260760571|ref|ZP_05872914.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
2 str. 86/8/59]
gi|17982000|gb|AAL51305.1| peptidyl-prolyl cis-trans isomerase [Brucella melitensis bv. 1 str.
16M]
gi|62196928|gb|AAX75228.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str.
9-941]
gi|82616808|emb|CAJ11900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella melitensis
biovar Abortus 2308]
gi|189020583|gb|ACD73305.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
S19]
gi|260096167|gb|EEW80043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus
NCTC 8038]
gi|260669165|gb|EEX56105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
4 str. 292]
gi|260671003|gb|EEX57824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
2 str. 86/8/59]
Length = 331
Score = 61.8 bits (147), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/242 (10%), Positives = 71/242 (29%), Gaps = 11/242 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + +++ ID+ + + K + + + L
Sbjct: 78 DQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERAL 137
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + D KE + +V+ VKT EE +
Sbjct: 138 HNEYFKNAIVDKISDADVRARYDKEIAAMPPQV------EVRARHILVKTKEEA-----E 186
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+++ + G F D+ K ++ + + F+ P+
Sbjct: 187 AIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPV 246
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ Y V ++ + + D+ + ++ ++ + L+ + D I++
Sbjct: 247 QTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEK 306
Query: 626 YL 627
+
Sbjct: 307 AM 308
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 83/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+ +++A Y+K ++
Sbjct: 120 DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 179
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+ S LG FS+ + + F+L
Sbjct: 180 KTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKP 238
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 239 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 296
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 297 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 331
>gi|254690082|ref|ZP_05153336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
6 str. 870]
gi|256258335|ref|ZP_05463871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
9 str. C68]
gi|260755622|ref|ZP_05867970.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
6 str. 870]
gi|260884648|ref|ZP_05896262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
9 str. C68]
gi|297247182|ref|ZP_06930900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
5 str. B3196]
gi|260675730|gb|EEX62551.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
6 str. 870]
gi|260874176|gb|EEX81245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
9 str. C68]
gi|297174351|gb|EFH33698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella abortus bv.
5 str. B3196]
Length = 331
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/196 (9%), Positives = 59/196 (30%), Gaps = 2/196 (1%)
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
++ L + D + AL + + + + A R + V
Sbjct: 113 EAEKDKLDQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEV 172
Query: 494 KTAEEVSSKANQL--VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ + + +++ + G F D+ K ++ + +
Sbjct: 173 RARHILVKTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMVPEFEKA 232
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
F+ P++ Y V ++ + + D+ + ++ ++ + L+
Sbjct: 233 AFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLR 292
Query: 612 SQYSVTVHDNLIQRYL 627
+ D I++ +
Sbjct: 293 DGLKIDYKDPAIEKAM 308
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 83/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+ +++A Y+K ++
Sbjct: 120 DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 179
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+ S LG FS+ + + F+L
Sbjct: 180 KTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKP 238
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 239 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 296
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 297 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 331
>gi|152995084|ref|YP_001339919.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
MWYL1]
gi|150836008|gb|ABR69984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marinomonas sp.
MWYL1]
Length = 416
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/390 (11%), Positives = 106/390 (27%), Gaps = 59/390 (15%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFINSWKQELGMISQKIG 72
K+F + F + + + + + V + + S ++ ++ +
Sbjct: 1 MKLFSFFSLIIFALASVQTLHAAPTKIDGISAIVDSKPILESDIMSRFQIVKDRV----- 55
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ + ++I + ++ A + +G+ A V I K+
Sbjct: 56 ----PGGVMTDNIHRQIQNQMIDEALQVNYARKVGMRASSSEVDNAILGV----AKNMNL 107
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ LA +GIN + Y + + + ++ V + + +
Sbjct: 108 DLQGLKNVLADKGINYERYREQIEQEILINNIKREIVKKRIAISEQEIDDYLSSDTSITK 167
Query: 193 DYIVLNNRHVPAIADPSNAVL--------TQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
+ ++ RH+ A E I
Sbjct: 168 EKDQVHLRHIIIRASNPEEAAAKIKTIAGKIHSENDFVQQAIENSDGQFAIEGGDLGWRP 227
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD-------------------- 284
++ ++A + + L++ +K +
Sbjct: 228 LNQLPPLFVRALESEKGPLIGPLQSNAGFHLLWVIEKRSPDVTLQQQTKTRHILVRANEI 287
Query: 285 -----------EAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSI 329
E ++ L+ G F QLA+E + LG + + + +
Sbjct: 288 RNMEQTKVLADELYKKLENGADFAQLAKEYSEDQGSTLQGGDLGWVTLGAMVPE--FEEV 345
Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
GD + FG+ I V + +
Sbjct: 346 MKKTNIGDISKPFRTQFGWHILQVEGRREA 375
Score = 45.6 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 33/358 (9%), Positives = 92/358 (25%), Gaps = 5/358 (1%)
Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
Q+ EA + + K G + + ++ + ++
Sbjct: 58 GVMTDNIHRQIQNQMIDEALQVNYARKVGMRASSSEVDNAILGVAKNMNLDLQGLKNVLA 117
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ ++ ++ + I + + + +
Sbjct: 118 DKGINYERYREQIEQEILINNIKREIVKKRIAISEQEIDDYLSSDTSITKEKDQVHLRHI 177
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
EE A ++ E + D G + LF
Sbjct: 178 IIRASNPEEAAAKIKTIAGKIHSENDFVQQAIENSDGQFAIEGGDLGWRPLNQLPPLFVR 237
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
+ + + G ++ I++ P + + + ++ E+ A
Sbjct: 238 ALESEKGPLIGPLQSNAGFHLLWVIEKRSPDVTLQQQTKTRHILVRANEIRNMEQTKVLA 297
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
++L + + G +F + K +T Q + +V
Sbjct: 298 DELYKKL-ENGADFAQLAKEYSEDQGSTLQGGDLGWVTLGAMVPEFEEVMKKTNIGDISK 356
Query: 564 PIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + +V + + +K LT +L + + L++ + +
Sbjct: 357 PFRTQFGWHILQVEGRREADISDKVKRSNAERALTAQKQDIVLGNWLDELRADAFIDI 414
>gi|39997524|ref|NP_953475.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Geobacter sulfurreducens PCA]
gi|39984415|gb|AAR35802.1| PPIC-type PPIASE domain protein [Geobacter sulfurreducens PCA]
Length = 351
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/274 (12%), Positives = 81/274 (29%), Gaps = 26/274 (9%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
+ + + +++EE E+ + ++ +D ++
Sbjct: 77 RAKKVLMSQNRMTQPVTPDIAQKVEEAAVSQLIAKELLYQAG-RKQEIKDLDKQIQERVS 135
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
+ A P +E+ L + D T A D + K+ + EE
Sbjct: 136 QSKARFPSQEEYLKTLKSMDMTEKDVETFAREDLVINNLIEKDVVAKTTVSDEEAKKFYN 195
Query: 488 KDWKTVKTAEEVSS--------------------KANQLVLEYSKEGKNFRDIGKNLGAS 527
+ K E V + + + +L+ K G +F ++ K
Sbjct: 196 DNIDKFKRDETVKASHILIKVEPNASADDKKKAKEKAEAILKQVKGGADFAEVAKKESGC 255
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---- 583
+ F+ V +E Y + K+T+ +
Sbjct: 256 PSAPQGGDLGFFGKGQMVPPFEKAAFAMKPGEV-SDVVETQFGYHIIKLTDKRPAETVKF 314
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ KD+ + +L Q ++ ++ + LK +
Sbjct: 315 EETKDRIVQFLKQQKVQEGINEYVENLKKAAKIE 348
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/168 (10%), Positives = 56/168 (33%), Gaps = 9/168 (5%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
VV V + + + K + ++ V + A+ +++ + L++ L Q
Sbjct: 61 VVVKVNGVAITRAEVDRAKKVLMSQ--NRMTQPVTPDIAQK--VEEAAVSQLIAKELLYQ 116
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
++ ++ +++S S + ++ L + EK+ + L
Sbjct: 117 AGRKQEIKDLDKQIQERVSQSKARFP-----SQEEYLKTLKSMDMTEKDVETFAREDLVI 171
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
+++ V + + ++ + H+ +P+
Sbjct: 172 NNLIEKDVVAKTTVSDEEAKKFYNDNIDKFKRDETVKASHILIKVEPN 219
>gi|332140206|ref|YP_004425944.1| survival protein surA [Alteromonas macleodii str. 'Deep ecotype']
gi|327550228|gb|AEA96946.1| survival protein surA [Alteromonas macleodii str. 'Deep ecotype']
Length = 427
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/203 (10%), Positives = 57/203 (28%), Gaps = 12/203 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K + L + + + V V V + V S ++ +
Sbjct: 1 MKFIIRALMLG-ALLSFNSIAQEVVLDRVAVIVDQGVVLESEIDALVQEVKRNAAAN--- 56
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ + L + ++ L++ + Q E +G+ ++ I
Sbjct: 57 --DQQLPSDRALRTQAIERLITKSLQLQMAERMGIRISDPQLEQTIGNIASNQNATV--- 111
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSR--TDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ ++LA EGI +Y + + + + + +
Sbjct: 112 -EQLRAQLAAEGIAYDDYREDIREEIIMGEVRRANVRRRVYITPQEIETLVDLMEQQGAQ 170
Query: 192 VDYIVLNNRHVPAIADPSNAVLT 214
L + + +P++ +
Sbjct: 171 QAEYRLGHILIGFPPEPTDEDIQ 193
>gi|186475788|ref|YP_001857258.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phymatum STM815]
gi|184192247|gb|ACC70212.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phymatum STM815]
Length = 259
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/180 (13%), Positives = 59/180 (32%), Gaps = 10/180 (5%)
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE--------E 498
P K + I+ + EV + K + E E
Sbjct: 81 SKPEVKAQVAVAQQTVVLRALIESYVKKNQPTDAEVKAKYDELVKQIGGKEYHLHHILVE 140
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPV 557
+A L+ + K G +F D+ K + +D ++ K + + +
Sbjct: 141 NEQQAKDLIAKI-KGGASFEDLAKQFSKDPGSGKNGGDLDWSDPKAYVPEFAAAAEKLQK 199
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+ + + +V + + P ++ + + Q M ++ L + L+++ V
Sbjct: 200 GQMTDEPVHTQFGWHIIRVDDVRQTPPPPFEQVKAQIAQQMQQEKLQAFEENLRAKAKVQ 259
Score = 37.1 bits (83), Expect = 9.6, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 12/80 (15%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + Q S L + + + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADALVAQLVQQGQQ-----------DSPKLQQAVREELVNREILM 71
Query: 101 QFIEDIGLEADHGRVWGEIA 120
Q G+ V ++A
Sbjct: 72 QEAIREGI-PSKPEVKAQVA 90
>gi|254708930|ref|ZP_05170741.1| parvulin-like PPIase precursor [Brucella pinnipedialis B2/94]
gi|256030456|ref|ZP_05444070.1| parvulin-like PPIase precursor [Brucella pinnipedialis M292/94/1]
gi|261316430|ref|ZP_05955627.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
pinnipedialis B2/94]
gi|265987500|ref|ZP_06100057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
pinnipedialis M292/94/1]
gi|261295653|gb|EEX99149.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
pinnipedialis B2/94]
gi|264659697|gb|EEZ29958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella
pinnipedialis M292/94/1]
Length = 328
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/196 (9%), Positives = 59/196 (30%), Gaps = 2/196 (1%)
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
++ L + D + AL + + + + A R + V
Sbjct: 110 EAEKDKLDQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEV 169
Query: 494 KTAEEVSSKANQL--VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ + + +++ + G F D+ K ++ + +
Sbjct: 170 RARHILVKTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMVPEFEKA 229
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
F+ P++ Y V ++ + + D+ + ++ ++ + L+
Sbjct: 230 AFALKPGEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLR 289
Query: 612 SQYSVTVHDNLIQRYL 627
+ D I++ +
Sbjct: 290 DGLKIDYKDPAIEKAM 305
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 83/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+ +++A Y+K ++
Sbjct: 117 DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 176
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+ S LG FS+ + + F+L
Sbjct: 177 KTKEEAEAIIKKLEGGAKFEDLAKASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKP 235
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 236 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 293
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 294 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 328
>gi|311070875|ref|YP_003975798.1| putative lipoprotein [Bacillus atrophaeus 1942]
gi|310871392|gb|ADP34867.1| putative lipoprotein [Bacillus atrophaeus 1942]
Length = 257
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 2/149 (1%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
TV V +K+ S + + Q + + A+ + K+ +++LV
Sbjct: 63 TDDKKTVAIVNNEKLTGSDYNSVLTSAQTQYQQSGQDPTSKDAAK--QIKKQTINSLVGQ 120
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
L Q G +A V ++A S + D +F+ + + L + + +
Sbjct: 121 TLLLQEANKKGYKASDKEVDKQLAESKKQYKSDKEFNAALKKAGLNTTKLKSELADNIKY 180
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ +V V + A +
Sbjct: 181 EKYVEKEVPKDKVTDKEVKDYYDQYAAKQ 209
>gi|241759093|ref|ZP_04757204.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
gi|241320695|gb|EER56948.1| peptidyl-prolyl cis-trans isomerase [Neisseria flavescens SK114]
Length = 329
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/285 (7%), Positives = 71/285 (24%), Gaps = 10/285 (3%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V + + + Q + + + + L +++L +++ +
Sbjct: 52 SDGIAAVVDNEVITHRQVAQAVAQARQTMPK-------GTQMDANELRQQVLAQMINQSL 104
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + IA +P D+ S + + + +
Sbjct: 105 ILQAGKRRNIQATDSEIEAVIAHNPNIKNPSAAVRQDIADSIIVEKVRQQAIMQNSRVSD 164
Query: 159 LSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ G+ + D I + +
Sbjct: 165 SEVARYIEQAKQQGVTLPEADPVRQYHAQHILIKADNDNAAVGAESTIRKIYSQARSG-- 222
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ R + D+ + ++ E K + + ++
Sbjct: 223 ADFGGLARQYSQDSSAGNGGDLGWFADGMMVAPFEEAVHKLKPGQISAPVRTQFGWHIIK 282
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
N + ++ L++++ + + L D
Sbjct: 283 LNDVREAGTPEERQQNAVRQYLSQQKAQQATTNLLRELHSSSYVD 327
>gi|295106377|emb|CBL03920.1| Parvulin-like peptidyl-prolyl isomerase [Gordonibacter pamelaeae
7-10-1-b]
Length = 439
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/191 (10%), Positives = 59/191 (30%), Gaps = 9/191 (4%)
Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ----KIGFVVNSERARSVG 84
G S + +V ++P + +S G +
Sbjct: 29 GASASGTKTYTGGVAATVNGTEIPEDEVTGMVESIRSQMSMTDADTWGQWLADNAMTPES 88
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
+ ++++D+ + Q ++ + + + + ++ + + + + L +
Sbjct: 89 VREEMIDSFAQQELIKQGAKEKNISVESSEIDDIVNKTKANYE-----DDEKWKAALEQA 143
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
G E++Y ++ L + + F PS L + + Y +
Sbjct: 144 GFTEEKYRENVESQLLQKKLTESFASDEEPSQEDLLKYAQMYASAYDGAKRSSHILFDSG 203
Query: 205 IADPSNAVLTQ 215
+ +VL Q
Sbjct: 204 DEATAQSVLDQ 214
Score = 41.4 bits (94), Expect = 0.44, Method: Composition-based stats.
Identities = 29/302 (9%), Positives = 82/302 (27%), Gaps = 18/302 (5%)
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
+ + T ++ + ++ + + + +M + A +++ + + +
Sbjct: 52 PEDEVTGMVESIRSQMSMTDADTWGQWLADNAMTPESVREEMIDSFAQQELIKQGAKEKN 111
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
+ +D+I + K D A + E E L + + S +
Sbjct: 112 ISVESSEIDDIVNKTKANYEDDEKWKAALEQAGFTEEKYRENVESQLLQKKLTESFASDE 171
Query: 454 HTVALPDGSYMWVQIKES----IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
Y + + + + + + ++A + +
Sbjct: 172 EPSQEDLLKYAQMYASAYDGAKRSSHILFDSGDEATAQSVLDQINSGQLDFAEAAKQYSK 231
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQ-INRMDNENKFFGYDGISQVFSGPVE---------- 558
+ EG K + + + D +S + +
Sbjct: 232 DNAEG-TGGSAAKGGDVGWDKLSSFVTEYTDALAGLEKDQVSGLVTSQYGIHIIKCTDVF 290
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
E+G V ++T++ PV+ D L Q + K + +
Sbjct: 291 NAPKVVGEDGTETV--ELTSTDQIPVEFLDSVKESLKQQNQSTAVQEWFNEYKENADIQI 348
Query: 619 HD 620
+
Sbjct: 349 NP 350
>gi|86160366|ref|YP_467151.1| DsbA oxidoreductase [Anaeromyxobacter dehalogenans 2CP-C]
gi|85776877|gb|ABC83714.1| DsbA oxidoreductase [Anaeromyxobacter dehalogenans 2CP-C]
Length = 349
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/237 (8%), Positives = 68/237 (28%), Gaps = 7/237 (2%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ S+ V VG Q + K +L + Q+ + L ++ L++++
Sbjct: 30 NPSAPVAKVGGQAITAGELDELVKSDLKQLEQQY-------EEQKYQLKRQGLESMIRRR 82
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ + G+ D +A+ P + + ++ + + ++ D
Sbjct: 83 VFEAKAKAEGITPDELVNRDVVAKIPEPADDEVRALYERAKAGGQQLPPIDQVKPDIARF 142
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ ++ + + + + + V+ PA A + + +
Sbjct: 143 IKNQKAQAELTAYYEKLKKDMNVEVLLPAYMPPKVEVAATGPSKGPADAPITIVEFSDYQ 202
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
+ ++ V + + + +L + +
Sbjct: 203 CPFCVRAEPTMKDVMAAYPGKVRVVYRDFPLPSHDLAPKAAEAAHCAGDQGKYWEMH 259
>gi|163797530|ref|ZP_02191481.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
BAL199]
gi|159177279|gb|EDP61838.1| Parvulin-like peptidyl-prolyl isomerase [alpha proteobacterium
BAL199]
Length = 406
Score = 61.4 bits (146), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/173 (10%), Positives = 48/173 (27%), Gaps = 10/173 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + + + + + + + + L ++L +LV
Sbjct: 13 QRIAAVVNDEILSMRDLRSRLRMVI------VSSRLPATDETAQRLAPQVLRSLVDEQIQ 66
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + + + + + + N F + G++ + I +
Sbjct: 67 LQEAKRLNVAVTDQDLARARSEVE----QRNNLKPGQFEEFVRSLGVDPETVIRQLKSQV 122
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ T +V G + E + + V + DP+N
Sbjct: 123 AWTKLVRRRFGNDVTISQEEVTDVLQRMEADAGKTQKRVSEIVLTVDDPANEE 175
>gi|326560318|gb|EGE10706.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
7169]
gi|326566363|gb|EGE16513.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
BC1]
Length = 434
Score = 61.4 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/394 (9%), Positives = 106/394 (26%), Gaps = 59/394 (14%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
++ K + + + + S V V + + S + + I +
Sbjct: 5 FIIKTLTAAVISCTSLVSQAS-ISGNSHDGIVAVVNDEIILKSELNQATELVATEIQKN- 62
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD-- 129
G V ++A+++ LD L++ I G+ + + ++ + G +
Sbjct: 63 GGNVTQDQAQTL-----ALDELINEKLQLAIINRAGVVPNDEVIDQQLLQIAQSQGVNSL 117
Query: 130 ----NKFSHDVFVSR--LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+K + S L I + + + + S+ +
Sbjct: 118 SEFQSKLDAERAGSYVALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLN 177
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV---- 239
+ + + L+N + V + + + + +
Sbjct: 178 QVQYRLLHIRVPYLDNTASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQG 237
Query: 240 -------------------------HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
+ ++ ++ K ++
Sbjct: 238 ADTGLINATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSH 297
Query: 275 LVFPNQKEADEAFQSLKKGKKFIQL-------------AEEQGKSLSDISLGSFSKEYIP 321
++ K + QL +++ G + SLG ++ +
Sbjct: 298 ILARIDSNQSSDIAEQKINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMV 357
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+++ KGDF+ FG+ I V++
Sbjct: 358 PE--FETMMKNTAKGDFSTPFRSQFGWHILKVND 389
Score = 41.8 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 17/187 (9%), Positives = 57/187 (30%), Gaps = 4/187 (2%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ K + +G + + + + + + + + +++
Sbjct: 249 PPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSS 308
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
+ K N + + + G +F + + +Q + N+ +
Sbjct: 309 DIAEQKINAIYQQLQQ-GADFGTLAATYSDDTGSASQHGSLGWVNEGDMVPEFETMMKNT 367
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ P + + + KV + K + E ++ YL + + L+S
Sbjct: 368 AKGDFSTPFRSQFGWHILKVNDIKQHDITEQYRRNAAHEYLFLRSAPQAQEDWLQELRSS 427
Query: 614 YSVTVHD 620
+ +++
Sbjct: 428 AYIKIYE 434
>gi|220919173|ref|YP_002494477.1| DSBA oxidoreductase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219957027|gb|ACL67411.1| DSBA oxidoreductase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 349
Score = 61.4 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/273 (7%), Positives = 72/273 (26%), Gaps = 7/273 (2%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ S+ V VG Q + K +L + Q+ + L ++ L++++
Sbjct: 30 NPSAPVAKVGGQAITTGELDELVKSDLKQLEQQY-------EEQKYQLKRQGLESMIRRR 82
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ + G+ D +A+ P + + ++ + + ++ D
Sbjct: 83 VFEAKAKAEGITPDELVNRDVVAKIPEPADDEVRALYERAKAGGQQLPPIDQVKPDIARF 142
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ ++ + + + + + V+ P A + + +
Sbjct: 143 IKNQKAQAELTAYYEKLKKDMNVEVLLPAYMPPKVEVAATGPSKGPNDAPITIVEFSDFQ 202
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ ++ V + + + +L + +
Sbjct: 203 CPFCVRAEPTVKDVMAAYPGKVRVVYRDFPLPSHDLAPKAAEAAHCAGDQGKYWEMHDRL 262
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
++ + + L
Sbjct: 263 FAANGKLAVDDLKGYAREVGADGAKFDRCLESG 295
>gi|310657790|ref|YP_003935511.1| foldase lipoprotein [Clostridium sticklandii DSM 519]
gi|308824568|emb|CBH20606.1| putative foldase lipoprotein (Late stage protein export
lipoprotein) precursor [Clostridium sticklandii]
Length = 354
Score = 61.4 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/185 (14%), Positives = 61/185 (32%), Gaps = 10/185 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K L ++ +I+ L+ + S + V ++ +S + + I +G
Sbjct: 1 MKKLLSLIMSSLMIFSLAACSNTASANEWAAKVNDVEISYSDYEKNLAIIKKQIEATVGA 60
Query: 74 VVNSER-----ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
+ ++ + L ++L+ L+ + + + D E K
Sbjct: 61 DIWTQDSGQGKTYNEILKDQVLEKLIEDQLILAEAKKENITVDADEFEKEFT-----QFK 115
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
+ S + + L EGI ++ + F+ PS L + E
Sbjct: 116 EQVKSLPDYETFLKEEGITDEFLKKQLETDTIVFEYKEKFMEKNTPSEEDLKKYYDDNQE 175
Query: 189 NRSVD 193
N +V+
Sbjct: 176 NYNVN 180
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 33/276 (11%), Positives = 76/276 (27%), Gaps = 8/276 (2%)
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+I + + + + +Q+ +++ + E ++ + K
Sbjct: 61 DIWTQDSGQGKTYNEILKDQVLEKLIEDQLILAEAKKENITVDADEFEKEFTQFKEQVKS 120
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
LP + K+ + E K+ + K+ Y +
Sbjct: 121 LPDYETFLKEEGITDEFLKKQLETDTIVFEYKEKFMEKNTPSEEDLKKYYDDNQENYNVN 180
Query: 475 RDRKLE---EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA-SLLT 530
+ + + + K AE + VL G++F + K
Sbjct: 181 EVKASHILLKTVDENFVPLPEDKIAEIKKE--AEAVLAKVNSGEDFAVLAKEYSQDEASA 238
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
N + + FS V +E Y + KV K V +
Sbjct: 239 VNGGDLGFFAKGVMVKEFEDVAFSLEPNQVSDL-VETTYGYHIIKVFEKKN-EVTPFEDV 296
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + +A LK + +D +++
Sbjct: 297 KENIKNELAQKSYLDFVASLKESAKIEKNDAALKKA 332
>gi|326575894|gb|EGE25817.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
CO72]
Length = 434
Score = 61.0 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/394 (9%), Positives = 106/394 (26%), Gaps = 59/394 (14%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
++ K + + + + S V V + + S + + I +
Sbjct: 5 FIIKTLTAAVISCTSLVSQAS-ISGNSHDGIVAVVNDEIILKSELNQATELVATEIQKN- 62
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD-- 129
G V ++A+++ LD L++ I G+ + + ++ + G +
Sbjct: 63 GGNVTQDQAQTL-----ALDELINEKLQLAIINRAGVVPNDEVIDQQLLQIAQSQGVNSL 117
Query: 130 ----NKFSHDVFVSR--LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+K + S L I + + + + S+ +
Sbjct: 118 SEFQSKLDAERAGSYAALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLN 177
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV---- 239
+ + + L+N + V + + + + +
Sbjct: 178 QVQYRLLHIRVPYLDNTASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQG 237
Query: 240 -------------------------HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
+ ++ ++ K ++
Sbjct: 238 ADTGLINATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSH 297
Query: 275 LVFPNQKEADEAFQSLKKGKKFIQL-------------AEEQGKSLSDISLGSFSKEYIP 321
++ K + QL +++ G + SLG ++ +
Sbjct: 298 ILARIDSNQSSDIAEQKINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMV 357
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+++ KGDF+ FG+ I V++
Sbjct: 358 PE--FETMMKNTAKGDFSTPFRSQFGWHILKVND 389
Score = 41.8 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 17/187 (9%), Positives = 57/187 (30%), Gaps = 4/187 (2%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ K + +G + + + + + + + + +++
Sbjct: 249 PPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSS 308
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
+ K N + + + G +F + + +Q + N+ +
Sbjct: 309 DIAEQKINAIYQQLQQ-GADFGTLAATYSDDTGSASQHGSLGWVNEGDMVPEFETMMKNT 367
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ P + + + KV + K + E ++ YL + + L+S
Sbjct: 368 AKGDFSTPFRSQFGWHILKVNDIKQHDITEQYRRNAAHEYLFLRSAPQAQEDWLQELRSS 427
Query: 614 YSVTVHD 620
+ +++
Sbjct: 428 AYIKIYE 434
>gi|184157913|ref|YP_001846252.1| parvulin-like peptidyl-prolyl isomerase [Acinetobacter baumannii
ACICU]
gi|332872750|ref|ZP_08440716.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
gi|183209507|gb|ACC56905.1| Parvulin-like peptidyl-prolyl isomerase [Acinetobacter baumannii
ACICU]
gi|323517858|gb|ADX92239.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
TCDC-AB0715]
gi|332739047|gb|EGJ69908.1| PPIC-type PPIASE domain protein [Acinetobacter baumannii 6014059]
Length = 436
Score = 61.0 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 49/404 (12%), Positives = 110/404 (27%), Gaps = 55/404 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + L VL S F+ V V + S +
Sbjct: 4 KHLKQFFKATTLAVLISS------SMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHE 57
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI------- 119
+ + V L ++LD L+ + ++ G++ D + +
Sbjct: 58 LQAQKKEVPP-----QQYLQFQVLDQLILRQAQLEQVKKYGIKPDEKSLNEAVLKVASQS 112
Query: 120 --ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
F K + + + + +R + +++SR + V S
Sbjct: 113 GSKSLEAFQQKLDAIAPGTYENLRSRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQ 172
Query: 178 LL----------------DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
D + + V + + + A+ S A +
Sbjct: 173 GQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQSNDLNALKKLSTATVKVEGADMG 232
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDE----LQAEYEKNKEKYFSPEIRTVEQLVF 277
+ ++ + + + + IS + L+ K E+ ++
Sbjct: 233 FRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILI 292
Query: 278 PN---------QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
++ D ++ LK G+ F LA SLG + +
Sbjct: 293 QPSEVVSPENAKQIIDSIYKRLKAGEDFAILAATYSNDTGSARDGGSLGWVTPGMMVPE- 351
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
D G+ + FG+ I V++ + + +
Sbjct: 352 -FDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDMTHEYQER 394
Score = 42.2 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 21/283 (7%), Positives = 80/283 (28%), Gaps = 5/283 (1%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I +F + + A E ++++
Sbjct: 150 QQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQ 209
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ ++ + + L +++ DG ++
Sbjct: 210 SNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLK 269
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + + + T + + E + + + + K G++F +
Sbjct: 270 LLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFAILAATYSN 329
Query: 527 SLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
+ + + + ++ PV + P + + + +VT+ + +
Sbjct: 330 DTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEI-SEPFQTQFGWHILQVTDKREKDMT 388
Query: 585 -QEKDKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +++ + +DS + +++ V + D + +
Sbjct: 389 HEYQERMARQILGERQFNTEIDSWLREVRANAYVEIKDPSLDK 431
>gi|210623289|ref|ZP_03293706.1| hypothetical protein CLOHIR_01656 [Clostridium hiranonis DSM 13275]
gi|210153690|gb|EEA84696.1| hypothetical protein CLOHIR_01656 [Clostridium hiranonis DSM 13275]
Length = 333
Score = 61.0 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/179 (11%), Positives = 47/179 (26%), Gaps = 15/179 (8%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL------DKKILDNL 93
+ TV V K+ + K + IG + G+ + +LD +
Sbjct: 22 NETVADVNGTKITLGQYEFMLKMNKDSVESNIGGADKWDEKDQTGVSYKDKYKRLVLDQM 81
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
++ L Q E GL+ + + D L +
Sbjct: 82 INTELLAQNAEKEGLKPTDKEIQASYNDLKTYVNSDEN---------LKGAAEELGINDE 132
Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ + ++ + D + Y++ +Y + ++
Sbjct: 133 FLKEQAKISLLIQKSQEKFYKEEKVTDAEMKKYYDEHIDEYKKDEVEASHILIKTTDDQ 191
Score = 51.0 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/274 (10%), Positives = 78/274 (28%), Gaps = 4/274 (1%)
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + K + + ++ E + K
Sbjct: 57 DKWDEKDQTGVSYKDKYKRLVLDQMINTELLAQNAEKEGLKPTDKEIQASYNDLKTYVNS 116
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
+ A +++ + + L ++ ++ Y I E
Sbjct: 117 DENLKGAAEELGINDEFLKEQAKISLLIQKSQEKFYKEEKVTDAEMKKYYDEHIDEYKKD 176
Query: 475 RDRKLE-EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+ T ++ + ++ + + VL+ K G +F ++ K +
Sbjct: 177 EVEASHILIKTTDDQNKPLPEADQKKAKAKAKKVLKEVKAGGDFAELAKKYSQDPGSAAN 236
Query: 534 INRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
+ K + F V ++ Y + KVT+ ++ ++ +
Sbjct: 237 GGALGAFGKGMMVQEFEDAAFGMEPGEVSDL-VKTDFGYHIIKVTD-RIKETTSFEEAKA 294
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + K+ IA L+ + + D +I+
Sbjct: 295 GIKEEILKNKYGEKIAALQKKAKIEKFDKVIESA 328
>gi|229530289|ref|ZP_04419677.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae 12129(1)]
gi|229332062|gb|EEN97550.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae 12129(1)]
Length = 431
Score = 61.0 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ K Q + L +++L+ L+
Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQNKQP-----LPQETVLREQVLEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ + K +
Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAKEGLTYPEFREQVRKEM 138
Score = 39.5 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 15/239 (6%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ +L L G +++ L D+ + +F
Sbjct: 195 ETLANKLVNDLKNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP---------TIFADQ 245
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKA 503
K + ++I + + EV + + + E +
Sbjct: 246 IKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQL 305
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKC 562
N+ V F ++ + + Q + + + Q+ + PV +
Sbjct: 306 NEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQI-S 364
Query: 563 FPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + + +V + K+K L + + + L++ V V
Sbjct: 365 EPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEV 423
>gi|226946688|ref|YP_002801761.1| peptidyl-prolyl cis-trans isomerase SurA [Azotobacter vinelandii
DJ]
gi|226721615|gb|ACO80786.1| Peptidyl-prolyl cis-trans isomerase SurA [Azotobacter vinelandii
DJ]
Length = 432
Score = 61.0 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + V + ++ I+++ G + L ++L+ L+ +
Sbjct: 33 DRIVAIIDNDVVMQTQLDRRLREVEQTIAKR-GAQLPPRD----QLVSQVLERLILESIQ 87
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q G+ + +A + N + + F + LAR+G++ E + + +
Sbjct: 88 LQMGSRAGIRIGDEELAQAMATI----AQRNGLTLEQFQAALARDGLSFDEAREQVRREM 143
Query: 160 SRTDVVGMFVG 170
+ V V
Sbjct: 144 IISRVRQRVVA 154
>gi|325121999|gb|ADY81522.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter calcoaceticus
PHEA-2]
Length = 436
Score = 61.0 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 49/404 (12%), Positives = 106/404 (26%), Gaps = 55/404 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + L L S F+ V V + S +
Sbjct: 4 KHLKQFFKATTLAALISS------SMHSFAQPADEVVAIVDNSVILKSDLQQGMAEAAHE 57
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI------- 119
+ + V L ++LD L+ + ++ G++ D + +
Sbjct: 58 LQAQKKEVPP-----QQYLQFQVLDQLILREAQLEQVKKYGIKPDEKSLNEAVLKVAGQS 112
Query: 120 --ARSPLFHGKDNKFSHDVFV------------SRLAREGINEKEYIDHYTKMLSRTDVV 165
F K + + + SRL ++ + + I
Sbjct: 113 GSKSLEAFQQKLDAMAPGTYESLRGRIAEDLAISRLRQQQVMSRIKISDQDVENFLKSPQ 172
Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
G G + + + + E +SV V + + + T + +
Sbjct: 173 GQAALGNQAHVIHMRISGDNAQEVQSVAKEVRSKLAQSNDINALKKLSTANVKVEGADMG 232
Query: 226 APEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPEIRTVEQLVF 277
I L + + ++ L+ K E+ ++
Sbjct: 233 FRPLSDIPTELAARITPLQDGQTTDLVSVRDGVHVLKLLERKQNEQKALVPQFQTRHILI 292
Query: 278 PN---------QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
++ D ++ LK G+ F LA SLG + +
Sbjct: 293 QPSEVVTLENAKQIIDNIYKRLKAGQDFATLAATYSNDTGSARDGGSLGWVTPGMMVPE- 351
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
D G+ + FG+ I V++ + + +
Sbjct: 352 -FDKKMQEIPVGEISEPFQTQFGWHILQVTDKREKDMTHEYQER 394
Score = 40.6 bits (92), Expect = 0.80, Method: Composition-based stats.
Identities = 23/283 (8%), Positives = 79/283 (27%), Gaps = 5/283 (1%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I +F + + A E ++++
Sbjct: 150 QQQVMSRIKISDQDVENFLKSPQGQAALGNQAHVIHMRISGDNAQEVQSVAKEVRSKLAQ 209
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
I ++ + + L V++ DG ++
Sbjct: 210 SNDINALKKLSTANVKVEGADMGFRPLSDIPTELAARITPLQDGQTTDLVSVRDGVHVLK 269
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + + + T + E + + + + K G++F +
Sbjct: 270 LLERKQNEQKALVPQFQTRHILIQPSEVVTLENAKQIIDNIYKRLKAGQDFATLAATYSN 329
Query: 527 SLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
+ + + + ++ PV + P + + + +VT+ + +
Sbjct: 330 DTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEI-SEPFQTQFGWHILQVTDKREKDMT 388
Query: 585 -QEKDKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +++ + +DS + +++ V + D + +
Sbjct: 389 HEYQERMARQILGERQFNTEIDSWLREVRANAYVEIKDPSLDK 431
>gi|121606958|ref|YP_984287.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
naphthalenivorans CJ2]
gi|120595927|gb|ABM39366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
naphthalenivorans CJ2]
Length = 469
Score = 61.0 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 9/142 (6%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
VV V + + + + + Q+ + L ++L+ ++S Q
Sbjct: 63 IVVVVNSEPITNNEVRTKLLRTEQQLKQQ-----SIALPPRSELMPQLLERMISDKAQLQ 117
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G + D V G + + N+ + D RL +GI+ ++ L
Sbjct: 118 AAQATGFKIDDNAVEGAVQTV----ARQNQITVDELRRRLKADGIDYAQFRSEIRDELLI 173
Query: 162 TDVVGMFVGGMRPSNLLLDQAK 183
+ + V + +
Sbjct: 174 SRLRQREVESRINVSEMEIDDY 195
>gi|297182861|gb|ADI19012.1| parvulin-like peptidyl-prolyl isomerase [uncultured alpha
proteobacterium HF0070_05I22]
Length = 296
Score = 61.0 bits (145), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/205 (11%), Positives = 51/205 (24%), Gaps = 17/205 (8%)
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D K + + L + T
Sbjct: 94 TAARFDAYDKKPEVAAAMQLAANRVLAESWLAEKVRAEITETAIQSAYDKFVA------- 146
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
V V+T E + V+ ++G +F ++ K N
Sbjct: 147 -----DTASREQVTASHILVETEAEAKA-----VIAVLQDGGDFAELAKEKSTGPSGPNG 196
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
+ FS + P++ + V KV + P + + +
Sbjct: 197 GALGTFGRGQMVPAFETAAFSLTIGSYSDTPVQTQFGWHVIKVDGKDITPAPDLEAMRAQ 256
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618
L ++ L ++ L++ + +
Sbjct: 257 LANNLSTQTLGRLLEELRASQDIQL 281
>gi|261209784|ref|ZP_05924089.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC341]
gi|260841174|gb|EEX67687.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. RC341]
Length = 431
Score = 61.0 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + K Q + L +++L+ L+
Sbjct: 28 DGVAVIVNSGVILQSDVDGALKTVKANAKQNKQP-----LPQESVLREQVLEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG++ D R+ I K+N+ + + ++ +A+EG+ E+ + K +
Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQEGLTYPEFREQVRKEM 138
Score = 37.9 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 27/261 (10%), Positives = 72/261 (27%), Gaps = 6/261 (2%)
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
+ D Q +I+ +V+E + E + E+ +
Sbjct: 164 ELLAQETDATVQYKISHIQLRVEEGQDKSEAESLANKLVGELKHGADFAQMAYTYSKGPK 223
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
G + +F K + ++I + + EV
Sbjct: 224 ALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVRGLETVAVTEV 283
Query: 483 LTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
+ + + + + ++ V +F ++ + + Q + +
Sbjct: 284 NARHILIKPTIILSDDGAQKQLSEFVQRIKNGEVSFGELAQQYSQDPGSAAQKGELGYQT 343
Query: 542 KFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQM 597
+ QV + PV + P + + + +V + K+K L
Sbjct: 344 PDLYVPEFKHQVETLPVGQI-SEPFKTVHGWHIVEVLDRRQVDRTDSALKNKAYRILFNR 402
Query: 598 MNKDLLDSVIAYLKSQYSVTV 618
+ + + L++ V +
Sbjct: 403 KFNEEASAWLQELRASAFVEI 423
>gi|291296508|ref|YP_003507906.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
DSM 1279]
gi|290471467|gb|ADD28886.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus ruber
DSM 1279]
Length = 305
Score = 61.0 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/145 (13%), Positives = 43/145 (29%), Gaps = 3/145 (2%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
+ FLI L + V +V + S + + ++ G + E +
Sbjct: 6 LLFLITALGSLAVAQ-SDPVVATVANTTITKSQLELRFGLYIRDSERQNGLSYSEEALAA 64
Query: 83 VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
L K+ L+ + + E G A V +A + F+ + + +
Sbjct: 65 --LKKRFLELVARERAIILKAEAAGFAASKDDVQAAVAEVKADFDSEEAFTQALKEAGIP 122
Query: 143 REGINEKEYIDHYTKMLSRTDVVGM 167
+ + T ++
Sbjct: 123 SLEVYHTLVYEALTYNAYLEHLLKQ 147
>gi|226227552|ref|YP_002761658.1| putative peptidyl-prolyl cis-trans isomerase [Gemmatimonas
aurantiaca T-27]
gi|226090743|dbj|BAH39188.1| putative peptidyl-prolyl cis-trans isomerase [Gemmatimonas
aurantiaca T-27]
Length = 463
Score = 61.0 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 51/477 (10%), Positives = 122/477 (25%), Gaps = 70/477 (14%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
D+ ++ VG Q + S ++S G + S + L++ L
Sbjct: 39 PDSSKTIPVDGIAAIVGDQVILVSEVMSSVNSARAQ-----GAKIESAK-DLSKLEQDAL 92
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
L+ L Q + +E + + + + + F L G E
Sbjct: 93 QQLIEAELLVQKAKLEKIEVNDVELQSGVDSREKQARGNFSTDAE-FRQALKENGFGTVE 151
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+R + V L + +N
Sbjct: 152 EWRKMQLDAARRSKLQQEV------------------------MQKLQRDGKVTAVNVTN 187
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
A + + +E+ K E + + + A K +
Sbjct: 188 AEIDEAYEEAKTQLPRKEARVGMRQI----------------VVATKPSEDAKKKARVKI 231
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
+ E E + +L LG + + D +
Sbjct: 232 DSLRAQLDKHPEDFENIAKRESMDGTREL---------GGDLGWNRRGRMVPE--FDRMM 280
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
G +PV+ FGY I V ++P+ ++ + + + + ++ +
Sbjct: 281 FALNPGVISPVLETGFGYHIIRVDRVQPA----------EVKARHILIRPTVDSVDEGRT 330
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
++ + + + + K + + +P + +D +
Sbjct: 331 KLLADSVAGAWRKGGSYDSLSVKFHDESGGEEKTIPEYPRSELPEAYRNALEGAKLNDII 390
Query: 451 SKDHTVA--LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ Q+ + + E T +++ K + Q
Sbjct: 391 GPFAIPDPAAGANKFIIAQVTLLDEGGEMTVTEARTRIREHLAGEKKMRRLIDSLKQ 447
>gi|153007317|ref|YP_001381642.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
gi|152030890|gb|ABS28658.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
Length = 317
Score = 61.0 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/270 (10%), Positives = 64/270 (23%), Gaps = 10/270 (3%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
S V V + + ++ ++ G V L +++LD LV
Sbjct: 29 GSPPAPPAVALVNGEPIGADVLARELREASAGDARGDGGDV---------LRRRLLDELV 79
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L Q + +V R + F + RL++ + +
Sbjct: 80 DRTLLLQEARARSIVVGQDQVERAFLRVRAEY-PGTHFDDLLAQQRLSQADLKARLADQL 138
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
+ L V + E V + + +
Sbjct: 139 TVERLFEEQVYPQVQVSDAEIQRYFADHAAEFEEPEKVHVLQVVVASKEEALAVREKLRR 198
Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
+ ++ + ++ N+ +P
Sbjct: 199 NPQTFAEVARKSSIAPEGKGGGDLGYIGRGSGFPEVFDVTFTLPLNRVSDVTPSPYGFHI 258
Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
+++ A +G +LA E+
Sbjct: 259 FKVVDRRAAQRRTLEQARGDIAAKLAREKR 288
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/205 (8%), Positives = 59/205 (28%), Gaps = 5/205 (2%)
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
+ G + +++L + Y VQ+ ++ R
Sbjct: 109 AEYPGTHFDDLLAQQRLSQADLKARLADQLTVERLFEEQVYPQVQVSDAEIQRYFADHAA 168
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+ + ++ +A + + + + F ++ + + +
Sbjct: 169 EFEEPEKVHVLQVVVASKEEALAVREKLRRNPQTFAEVARKSSIAPEGKGGGDLGYIGRG 228
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMM 598
+ F+ P+ V + + +FKV + + Q + + L +
Sbjct: 229 SGFPEVFDVTFTLPLNRV-SDVTPSPYGFHIFKVVDRRAAQRRTLEQARGDIAAKLAREK 287
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLI 623
+ + L+ + + V + +
Sbjct: 288 RAQVQQDYVKGLRERARIEVDEKAV 312
>gi|303236785|ref|ZP_07323364.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN]
gi|302482953|gb|EFL45969.1| PPIC-type PPIASE domain protein [Prevotella disiens FB035-09AN]
Length = 407
Score = 61.0 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 49/347 (14%), Positives = 103/347 (29%), Gaps = 39/347 (11%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ + KG F +LA++ K S L ++ + K G+ + I
Sbjct: 90 YNVIMKGGNFAELAKKYSKDPSSAARGGELPLITRGQTVQA--FEEALFSMKPGEISHPI 147
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
FGY I + +K DI + E++ + + A
Sbjct: 148 LSPFGYHIIKYVA--KEQFQPYDSLKADIHQFIEARNLREQIIDQKLQKMATEAGNGVTP 205
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ +K+ ++ + + Y + LL + K +
Sbjct: 206 QQLVEKKLAEME--------EKDPNLKNLVREYHDGLLLIEMSSREVWDKASNDEAGLQA 257
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
Y K R + + + + V ++ F+D G+
Sbjct: 258 YFKKHKKHYAWKEPRFKG-----IAYHVQKKEDVKAVKDCVAKI---------PFKDWGE 303
Query: 523 NLGASLLTTNQINRM---DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
L + + I + ++F P+EN Y + V
Sbjct: 304 KLRTTFNNDSTIRIRVEKGLFKQGDNPLVDKEIFKQN---TTVKPVEN---YPIDAVYGK 357
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
K+ +E + S + + L I L+ +Y+V+V+ ++
Sbjct: 358 KLKAPEEMNDVRSQVISDYQESLEKEWIKALRKKYTVSVNREVLNTV 404
>gi|326570911|gb|EGE20935.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
BC7]
Length = 434
Score = 61.0 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/394 (9%), Positives = 106/394 (26%), Gaps = 59/394 (14%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
++ K + + + + S V V + + S + + I +
Sbjct: 5 FIIKTLTAAVISCTSLVSQAS-ISGNSHDGIVAVVNDEIILKSELNQATELVATEIQKN- 62
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD-- 129
G V ++A+++ LD L++ I G+ + + ++ + G +
Sbjct: 63 GGNVTQDQAQTL-----ALDELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVNSL 117
Query: 130 ----NKFSHDVFVSR--LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+K + S L I + + + + S+ +
Sbjct: 118 SEFQSKLDAERAGSYVALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLN 177
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV---- 239
+ + + L+N + V + + + + +
Sbjct: 178 QVQYRLLHIRVPYLDNTASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQG 237
Query: 240 -------------------------HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
+ ++ ++ K ++
Sbjct: 238 ADTGLINATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSH 297
Query: 275 LVFPNQKEADEAFQSLKKGKKFIQL-------------AEEQGKSLSDISLGSFSKEYIP 321
++ K + QL +++ G + SLG ++ +
Sbjct: 298 ILARIDSNQSSDIAEQKINAIYQQLQQGVDFGTLAATYSDDTGSASQHGSLGWVNEGDMV 357
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+++ KGDF+ FG+ I V++
Sbjct: 358 PE--FETMMKNTAKGDFSTPFRSQFGWHILKVND 389
Score = 41.4 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 17/187 (9%), Positives = 57/187 (30%), Gaps = 4/187 (2%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ K + +G + + + + + + + + +++
Sbjct: 249 PPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSS 308
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
+ K N + + + G +F + + +Q + N+ +
Sbjct: 309 DIAEQKINAIYQQLQQ-GVDFGTLAATYSDDTGSASQHGSLGWVNEGDMVPEFETMMKNT 367
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ P + + + KV + K + E ++ YL + + L+S
Sbjct: 368 AKGDFSTPFRSQFGWHILKVNDIKQHDITEQYRRNAAHEYLFLRSAPQAQEDWLQELRSS 427
Query: 614 YSVTVHD 620
+ +++
Sbjct: 428 AYIKIYE 434
>gi|297180116|gb|ADI16339.1| parvulin-like peptidyl-prolyl isomerase [uncultured bacterium
HF130_01F24]
Length = 436
Score = 61.0 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/212 (12%), Positives = 65/212 (30%), Gaps = 13/212 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ R+ + + + + GLS + V + V + S
Sbjct: 1 MID--RQKLKPKSLAVSIAITVFA-TFVGLSASAQRVLLDRVIALVDEGVILQSELDIRI 57
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
L + + G + E + +L+ L+ Q E + + D + ++
Sbjct: 58 ND-LQQAAARDGRPLPPE----SEIRDDVLEALIVENIQLQMAEQVSIRYDDDTINRVLS 112
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+++ S D +V+ L G+ + + + + ++ V
Sbjct: 113 NM----AENSNMSFDEYVTALENGGVYLQT-REQVRQQMMIQELQRGMVNRRITITEQEI 167
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
R V H+ +A +++
Sbjct: 168 DNFLNSEMGREVMAPDFFIDHMVVVASGTDSD 199
Score = 44.1 bits (101), Expect = 0.070, Method: Composition-based stats.
Identities = 25/355 (7%), Positives = 94/355 (26%), Gaps = 12/355 (3%)
Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
+ + V + + +E +L + + ++E + +
Sbjct: 88 ENIQLQMAEQVSIRYDDDTINRVLSNMAENSNMSFDEYVTALENGGVYLQTREQVRQQMM 147
Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
+ T ++ + + + + + + +K++
Sbjct: 148 IQELQRGMVNRRITITEQEIDNFLNSEMGREVMAPDFFIDHMVVVASGTDSDEEKQQKLR 207
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + + + + + DF + + L +
Sbjct: 208 FAADLTAQVEEGSNFLQVRAEASESSNFQIQSTDFGWRKAE--------QLPILFSSIVV 259
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ + +G ++ + + + + ++ E+ ++ +
Sbjct: 260 EMKEGEIAGPIEAGNGYHVIFLAGKRGGTEQIVKQTNIRHIMLSPNEIRNEEQTITEIQE 319
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
L G++F I + + +D N+ V E P
Sbjct: 320 LRQRIL-SGEDFAVIARQHSDDATSVVAGGDLDWVNEGGMPPEFEAVIQVLEENTLSEPF 378
Query: 566 ENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
E+ + + +V + + + + + + L L + + ++ + V
Sbjct: 379 ESATGWHIAEVLGRRESDLSQQYTRSQAANSLRNRKFDLELQNWMIEIREKAFVE 433
>gi|197105171|ref|YP_002130548.1| peptidyl-prolyl cis-trans isomerase family protein
[Phenylobacterium zucineum HLK1]
gi|196478591|gb|ACG78119.1| peptidyl-prolyl cis-trans isomerase family protein
[Phenylobacterium zucineum HLK1]
Length = 468
Score = 61.0 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 36/142 (25%), Gaps = 16/142 (11%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
S V + + + + + ++ L +LV
Sbjct: 74 GISESVAAVVNDEIISTYDLAQRMRLLIATSGVQ------PTEQTLPQFQREALVSLVDE 127
Query: 97 ATLDQFIE------DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
Q + I + A V EIA + N + + F+S L GI
Sbjct: 128 RLQFQELRRVEREQKIDIVATDEEVDEEIADM----ARQNNMTREQFLSFLGARGIGVDT 183
Query: 151 YIDHYTKMLSRTDVVGMFVGGM 172
+S + G
Sbjct: 184 LRQQIRAQVSWARWIRGRYGSR 205
>gi|296113335|ref|YP_003627273.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis RH4]
gi|295921029|gb|ADG61380.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Moraxella
catarrhalis RH4]
gi|326563565|gb|EGE13824.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
12P80B1]
gi|326570173|gb|EGE20218.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
BC8]
Length = 434
Score = 61.0 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/394 (9%), Positives = 106/394 (26%), Gaps = 59/394 (14%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
++ K + + + + S V V + + S + + I +
Sbjct: 5 FIIKTLTAAVISCTSLVSQAS-ISGNSHDGIVAVVNDEIILKSELNQATELVATEIQKN- 62
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD-- 129
G V ++A+++ LD L++ I G+ + + ++ + G +
Sbjct: 63 GGNVTQDQAQTL-----ALDELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVNSL 117
Query: 130 ----NKFSHDVFVSR--LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+K + S L I + + + + S+ +
Sbjct: 118 SEFQSKLDAERAGSYVALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLN 177
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV---- 239
+ + + L+N + V + + + + +
Sbjct: 178 QVQYRLLHIRVPYLDNTASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQG 237
Query: 240 -------------------------HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
+ ++ ++ K ++
Sbjct: 238 ADTGLINATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSH 297
Query: 275 LVFPNQKEADEAFQSLKKGKKFIQL-------------AEEQGKSLSDISLGSFSKEYIP 321
++ K + QL +++ G + SLG ++ +
Sbjct: 298 ILARIDSNQSSDIAEQKINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMV 357
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+++ KGDF+ FG+ I V++
Sbjct: 358 PE--FETMMKNTAKGDFSTPFRSQFGWHILKVND 389
Score = 41.8 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 17/187 (9%), Positives = 57/187 (30%), Gaps = 4/187 (2%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ K + +G + + + + + + + + +++
Sbjct: 249 PPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSS 308
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
+ K N + + + G +F + + +Q + N+ +
Sbjct: 309 DIAEQKINAIYQQLQQ-GADFGTLAATYSDDTGSASQHGSLGWVNEGDMVPEFETMMKNT 367
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ P + + + KV + K + E ++ YL + + L+S
Sbjct: 368 AKGDFSTPFRSQFGWHILKVNDIKQHDITEQYRRNAAHEYLFLRSAPQAQEDWLQELRSS 427
Query: 614 YSVTVHD 620
+ +++
Sbjct: 428 AYIKIYE 434
>gi|221135224|ref|ZP_03561527.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Glaciecola sp.
HTCC2999]
Length = 431
Score = 61.0 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/199 (14%), Positives = 60/199 (30%), Gaps = 11/199 (5%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
FL +L + A+ V V + + S + +
Sbjct: 3 FLGILIGCLWLSVSVSAMAQTELDKVSVIVDQGVILESEINELIATVKESAKKN-NQSLP 61
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
S+RA L + ++ L+ Q E +G++ ++ IA D
Sbjct: 62 SDRA----LRTQAIERLILDNLQMQMAERMGIQVSDPQLEQTIANIAKNQNSTM----DQ 113
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPSNLLLDQAKRFYFENRSVDY 194
+ +A+ G++ Y + K L +V V + +
Sbjct: 114 LRAGIAQAGLDYDSYRETVRKELITGEVRRANVRRRIYITPQEISSLVALIEEQGNEQAE 173
Query: 195 IVLNNRHVPAIADPSNAVL 213
L + + +P++A +
Sbjct: 174 YRLGHILIGFPPEPTDADI 192
Score = 38.7 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 19/196 (9%), Positives = 60/196 (30%), Gaps = 4/196 (2%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD- 485
G LF + + + ++I+E+ KLEE+
Sbjct: 229 GDMGWLNINSMPTLFAEVVQGKEADELIGPIRSGAGFHILKIQETRGIEVAKLEEINARH 288
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
+ + + ++V + + + + +F D+ K + + + +
Sbjct: 289 ILVKPSIILSEQKVETMLQEFKAQVLEGTADFADLAKAHSEDPGSAVKGGELGFADPSLY 348
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT---QMMNKDL 602
+ PI + + + ++ + +V + ++ K +
Sbjct: 349 VPAFKDALVKLEKDEISEPIRSVHGWHLIQLIDRRVDDITDRKKQDKAYQLIFNRKFAEE 408
Query: 603 LDSVIAYLKSQYSVTV 618
D+ + ++ + + V
Sbjct: 409 TDAWLREMREEAFIEV 424
>gi|326562023|gb|EGE12353.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
103P14B1]
gi|326574518|gb|EGE24460.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
101P30B1]
gi|326576358|gb|EGE26267.1| peptidyl-prolyl cis-trans isomerase SurA [Moraxella catarrhalis
O35E]
Length = 434
Score = 61.0 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/394 (9%), Positives = 106/394 (26%), Gaps = 59/394 (14%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
++ K + + + + S V V + + S + + I +
Sbjct: 5 FIIKTLTAAVISCTSLVSQAS-ISGNSHDGIVAVVNDEIILKSELNQATELVATEIQKN- 62
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD-- 129
G V ++A+++ LD L++ I G+ + + ++ + G +
Sbjct: 63 GGNVTQDQAQTL-----ALDELINEKLQLAIINRAGVIPNDEVIDQQLLQIAQSQGVNSL 117
Query: 130 ----NKFSHDVFVSR--LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+K + S L I + + + + S+ +
Sbjct: 118 SEFQSKLDAERAGSYAALRANLIQDAAIQALWQNQIQSRVRITDDQIDAFLSSPESARLN 177
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV---- 239
+ + + L+N + V + + + + +
Sbjct: 178 QVQYRLLHIRVPYLDNTASEQNRQQAALVAERVKSSLDAGMNLDQAMQNARGDYTPDLQG 237
Query: 240 -------------------------HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ 274
+ ++ ++ K ++
Sbjct: 238 ADTGLINATALPPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSH 297
Query: 275 LVFPNQKEADEAFQSLKKGKKFIQL-------------AEEQGKSLSDISLGSFSKEYIP 321
++ K + QL +++ G + SLG ++ +
Sbjct: 298 ILARIDSNQSSDIAEQKINAIYQQLQQGADFGTLAATYSDDTGSASQHGSLGWVNEGDMV 357
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+++ KGDF+ FG+ I V++
Sbjct: 358 PE--FETMMKNTAKGDFSTPFRSQFGWHILKVND 389
Score = 41.8 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 17/187 (9%), Positives = 57/187 (30%), Gaps = 4/187 (2%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ K + +G + + + + + + + + +++
Sbjct: 249 PPAIAAKVDKLTIGQTSTPIVTVNGIDIVKVVNKQQQNQVIVPKWQTSHILARIDSNQSS 308
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
+ K N + + + G +F + + +Q + N+ +
Sbjct: 309 DIAEQKINAIYQQLQQ-GADFGTLAATYSDDTGSASQHGSLGWVNEGDMVPEFETMMKNT 367
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ P + + + KV + K + E ++ YL + + L+S
Sbjct: 368 AKGDFSTPFRSQFGWHILKVNDIKQHDITEQYRRNAAHEYLFLRSAPQAQEDWLQELRSS 427
Query: 614 YSVTVHD 620
+ +++
Sbjct: 428 AYIKIYE 434
>gi|222056790|ref|YP_002539152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
FRC-32]
gi|221566079|gb|ACM22051.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
FRC-32]
Length = 308
Score = 61.0 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/170 (13%), Positives = 58/170 (34%), Gaps = 7/170 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+I ++ + + + + +A +++ + K G NF ++ K
Sbjct: 127 AKIGDAELQDFYNKNKEKFRTGEQVRASHILVKTEPEAQEILKQL-KAGGNFEELAKKQS 185
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---- 581
+ + + VF ++ Y + K+T +
Sbjct: 186 IDAAAAKGGDLGWFGKGSMLPEFENAVFGLKEGAT-SGIVQTKYGYHIIKLTGKRPAGVR 244
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ K++ + + +++ + LK VTV ++ + + LDGEK
Sbjct: 245 PLDEVKEQIKAAILPEKQQEVFKKLKEDLKKGAKVTVKEDAL-KTLDGEK 293
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 16/116 (13%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSV-----SGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
K+F V L + ++G + + V + S F +
Sbjct: 7 GKLFFVALCIT-AVFGCKGQTGTGAKEEKKSGPVLAEVNGSTITGSDFNKEVEAL----- 60
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
A +V K++LD +V + Q + G++ V ++
Sbjct: 61 ----PPYLKPMAETVEGKKELLDTMVVRELILQQAKKDGIDKS-QAVADKLEELKN 111
>gi|194364448|ref|YP_002027058.1| SurA domain [Stenotrophomonas maltophilia R551-3]
gi|194347252|gb|ACF50375.1| SurA domain [Stenotrophomonas maltophilia R551-3]
Length = 447
Score = 61.0 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/172 (10%), Positives = 43/172 (25%), Gaps = 9/172 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + S + + + E L +++L+ LV
Sbjct: 33 DRIAAVVDEDVILQSELQRAIANIKAQYVGRENQ-LPPEDV----LSRQVLERLVLVKLQ 87
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ G+ + + +G D RLA +GI+ ++ +
Sbjct: 88 VARAQGSGIRVGDQELNQAMNAIAQQNGSTL----DALRQRLAHDGIDFNDFRASVRDEI 143
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ + F + A Y + + ++
Sbjct: 144 TVQRLRQSFAQSRISVSEGEVDAALKQQATVGNQYHLAHILIAVPDGANADQ 195
>gi|319943549|ref|ZP_08017831.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
51599]
gi|319743364|gb|EFV95769.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
51599]
Length = 271
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/182 (12%), Positives = 55/182 (30%), Gaps = 10/182 (5%)
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA-- 503
+ P K + + I + EV + +K K + KA
Sbjct: 90 EKTPEVKQQLEQIRQDVLIRALIANELKQSPVTDAEVKAEYEKLVKDSAQSGAQEYKARH 149
Query: 504 --------NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
+ ++E K+G+ F + K N + N F + +
Sbjct: 150 ILVESEDEAKQIVERLKKGEGFESLAKLSKDPGSGANGGDLGWNTPDTFVKEFSEAMTKL 209
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
P++ Y + ++ + + D+ L Q + + + ++ L++
Sbjct: 210 KKGEYTVIPVKTQFGYHIIQLDDVRAAEPPPFDQVKPQLKQQLERQKIQALQEKLRASAK 269
Query: 616 VT 617
+
Sbjct: 270 IQ 271
Score = 40.6 bits (92), Expect = 0.86, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 12/84 (14%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V + +P S K I + G E K I D L++
Sbjct: 33 QNAAVVNGKAIPSSRVDEFVK-----ILAQQGRPDTPET------RKMIRDELITRELFV 81
Query: 101 QFIEDIGLEADHGRVWGEIARSPL 124
Q + GLE V ++ +
Sbjct: 82 QEADKRGLEKTP-EVKQQLEQIRQ 104
>gi|212213438|ref|YP_002304374.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
gi|212011848|gb|ACJ19229.1| peptidyl-prolyl cis-trans isomerase [Coxiella burnetii CbuG_Q212]
Length = 321
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/280 (11%), Positives = 73/280 (26%), Gaps = 11/280 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + S ++ Q+ KK+LD L+
Sbjct: 38 DQIVAVVNDEIITQSELNHALTAAKQQFMQRQ-----ISLPDQKTFKKKVLDQLIYQKLQ 92
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + ++ + + +AR + N S +L +EGI+ KE+ K L
Sbjct: 93 LQVAKHNQIKVTNNEINAAVARI----SQANHLSQTALKQKLTQEGISYKEFRSQLQKQL 148
Query: 160 SRTDVVGMFVGGMRPSNL--LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ + + N + K+ + S +Y + + +
Sbjct: 149 IISKLQHQALQDTISINKSDIAAFQKQHAGQIASTEYHIATILIPLPASATQAQINHAKG 208
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + + + S EL + K K E+ Q
Sbjct: 209 KAALVLKQLQKGSSFETAMKMHPGSADLGWRSAKELPQVFVKTVLKMKPNEVTGPIQAPN 268
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
++ + + ++
Sbjct: 269 GFHIIKLLDKEAKNTVSDQQIQRIVYQQKVEKALQKWLTQ 308
>gi|77458207|ref|YP_347712.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
fluorescens Pf0-1]
gi|77382210|gb|ABA73723.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudomonas
fluorescens Pf0-1]
Length = 317
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 7/128 (5%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ V + + + + L + + + N + + L + LD L+
Sbjct: 20 NNEPVAARVNGEAISEFRLERFFAEYLEDQGRAVASIRNPKAYK--QLRQAALDTLIDKE 77
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
L Q G++ D V ++ R+ G +KF + RL G +E + ++ +
Sbjct: 78 LLWQESRKRGVKIDEQTVREQVERTRTAIGGTDKF-----LQRLQDAGFDEASFTEYTHR 132
Query: 158 MLSRTDVV 165
L+ +
Sbjct: 133 ELAAQRMF 140
>gi|326405098|ref|YP_004285180.1| putative peptidyl-prolyl cis-trans isomerase SurA [Acidiphilium
multivorum AIU301]
gi|325051960|dbj|BAJ82298.1| putative peptidyl-prolyl cis-trans isomerase SurA [Acidiphilium
multivorum AIU301]
Length = 427
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/201 (14%), Positives = 59/201 (29%), Gaps = 13/201 (6%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+++V+ L+ L L G +VS V + + + +
Sbjct: 2 KSFVSYAALIGLAAGLLAPGAPARAQTVS---IAAVVNGTVITNADVAAR----TRLFAL 54
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
G S + L +I L+ A Q IE + ++ + R +
Sbjct: 55 SAGLPTTSATLQR--LKPQITRELIDQALQLQAIERNKVVVPEAKIAAALKRV----NEA 108
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
N +LA GI + + + TDV+ +G A+ +
Sbjct: 109 NHLPPGSLQKKLAAAGIPLSTLVSQFRTQIGWTDVLRKKLGPDLRPTAADIAAEEAAMKK 168
Query: 190 RSVDYIVLNNRHVPAIADPSN 210
+ +P++
Sbjct: 169 EIGKTQYHIAEIFIPVENPAD 189
>gi|239818232|ref|YP_002947142.1| SurA domain protein [Variovorax paradoxus S110]
gi|239804809|gb|ACS21876.1| SurA domain protein [Variovorax paradoxus S110]
Length = 469
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/192 (13%), Positives = 61/192 (31%), Gaps = 12/192 (6%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + + + + + + +ER L + +L+ L+S Q
Sbjct: 65 IVALVNSEPITNTEVQSRVTRLIR-------ENAEAERVPRAELTRLVLERLISERAQLQ 117
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
++ G++ D + + N+ S + R+ EGI+++E+ + L
Sbjct: 118 LAKENGIKVDEVAIDQAEQTV----ARQNQISVEELRRRVVAEGISQREFRNDLRDQLLL 173
Query: 162 TDVVGMFVGGM-RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
T + V + S+ D+ R + D + N +
Sbjct: 174 TRLRDREVESKVKISDAEADEYLRDQRNAPTKDAALQNINLAHLLVAVPENATEAQVATL 233
Query: 221 KDNYRAPEYKRI 232
+ + +
Sbjct: 234 QQRAQGLAQRAR 245
>gi|50085462|ref|YP_046972.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ADP1]
gi|49531438|emb|CAG69150.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ADP1]
Length = 451
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 40/408 (9%), Positives = 90/408 (22%), Gaps = 59/408 (14%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + L ++ S F+ V V + S +
Sbjct: 9 KYLKQFFKTTALALVVSS------SMQSFAAPTDEVVAIVDNSVILKSDLEQGVAEAQHQ 62
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE-------- 118
+ + V + ++LD L+ + ++ G++ D +
Sbjct: 63 LEAQKKTVPPLNYLQL-----QVLDQLILRQAQLEQVKRYGIKPDENTLNDAVLKVASQS 117
Query: 119 -IARSPLFHG---------------------------KDNKFSHDVFVSRLAREGINEKE 150
I F + S + + +
Sbjct: 118 GIKSLSAFQQKLDAIAPGTYASLRNRIGEDLAINRLRQQQVMSRIKISDQDVANFLKSPQ 177
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ + P L + N S D ++ +
Sbjct: 178 GQAMLGSQVHVIHARISAQSDVDPQQLQSVAQQVKQALNESNDITAISKKFSTKDIKVEG 237
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
A + + A + + ++ + + K + R
Sbjct: 238 ADMGYRDLAELPSELAARVSPLQAGQTTDLINVRDGIHVLKLIERKNSEQKAIVTQYQTR 297
Query: 271 TVEQLVFPNQKEADE------AFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYI 320
+ + LK G+ F LA SLG + +
Sbjct: 298 HILIQPSEVMSAEMAKQTIDSIYNRLKAGEDFTTLAATYSADTGSARDGGSLGWVTPGSM 357
Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
+S G + FG+ I V+ + + +
Sbjct: 358 VPE--FESKMKNTPVGQISEPFQTQFGWHILQVTATREKDMTHEYQER 403
Score = 40.2 bits (91), Expect = 0.94, Method: Composition-based stats.
Identities = 20/218 (9%), Positives = 66/218 (30%), Gaps = 5/218 (2%)
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + L + + DG ++ I+
Sbjct: 223 AISKKFSTKDIKVEGADMGYRDLAELPSELAARVSPLQAGQTTDLINVRDGIHVLKLIER 282
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
+ + + T + + E++ + + K G++F + A +
Sbjct: 283 KNSEQKAIVTQYQTRHILIQPSEVMSAEMAKQTIDSIYNRLKAGEDFTTLAATYSADTGS 342
Query: 531 T-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV--QEK 587
+ + + S++ + PV + P + + + +VT ++ + + +
Sbjct: 343 ARDGGSLGWVTPGSMVPEFESKMKNTPVGQI-SEPFQTQFGWHILQVTATREKDMTHEYQ 401
Query: 588 DKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQ 624
++ + LDS + +++ V + + +
Sbjct: 402 ERMARQVLGERQFDSELDSWLREVRAHAFVQIKEPQLD 439
>gi|297568757|ref|YP_003690101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
alkaliphilus AHT2]
gi|296924672|gb|ADH85482.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurivibrio
alkaliphilus AHT2]
Length = 305
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/164 (15%), Positives = 57/164 (34%), Gaps = 7/164 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++ + + R VK + K E KA ++ + +F + +
Sbjct: 122 IELNDEVLQRYLHENAEEFTVKTAVQVSKIVVETPEKAREVQARLA-ASDDFAVVAQQFS 180
Query: 526 ASLLTTNQINRMDNEN-KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
+ + + D F+ + PI KV++ + G +
Sbjct: 181 RHEESAANGGDLGFVGRQALPSDLAHHAFNVLRQGEISAPIVQSGGIYFLKVSDYR-GDL 239
Query: 585 QEKDKFISYLTQM----MNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
E DK LTQ + ++ + +A LK +Y + ++ ++
Sbjct: 240 PEFDKIRQLLTQQVAPHLRQNAFEQYLAELKEEYQIEINQEALR 283
Score = 37.9 bits (85), Expect = 5.1, Method: Composition-based stats.
Identities = 11/94 (11%), Positives = 27/94 (28%), Gaps = 15/94 (15%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK---QELGMISQKIGFV 74
+ + + + G + A + V + + + + + Q+ G
Sbjct: 10 MFAISMCMISGGAAQAGSASDPGDYVAKINGTTLTMEEVKTEMELRPEAVQGFLQQHGGA 69
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
+ +D+LV+ L Q L
Sbjct: 70 AHF------------VDSLVTKEILYQEALKHDL 91
>gi|294102245|ref|YP_003554103.1| hypothetical protein Amico_1258 [Aminobacterium colombiense DSM
12261]
gi|293617225|gb|ADE57379.1| hypothetical protein Amico_1258 [Aminobacterium colombiense DSM
12261]
Length = 358
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/214 (10%), Positives = 61/214 (28%), Gaps = 9/214 (4%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSST----VVSVGRQKVPFSSFI 57
+ +R+ R + ++ + F ++G S + G V + +KV S+
Sbjct: 3 MRSLRENMRWIMFGFVVIFVLSIFGMYGFSGRQRAPKGEGVQDYAVAEIDGKKVMRSTLE 62
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ + V + + + + +LD ++ L + +E G++A +
Sbjct: 63 ANVMNYVER-----NNVKDVSSNDLMAIRQAVLDGMIIETELAKAVESRGVKASDQEIDD 117
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + F + + + + + + + + V
Sbjct: 118 VIKQISNQFPTIEAFQKHLSDNDIKMDALRANIGTQLSQQKVVEQAASTVVVTPEEVQEF 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
F+ + + A
Sbjct: 178 YDKGKDAFFSRPAGRKVVYARFSNKEAADKIYEE 211
>gi|171910875|ref|ZP_02926345.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verrucomicrobium
spinosum DSM 4136]
Length = 344
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 59/177 (33%), Gaps = 4/177 (2%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + S + V V + V S + + + + + N + AR L + L
Sbjct: 20 SSAVAQSSNGIAVVVNGKVVTKSEVKEAVEAQ-EQLIRMTVRDPNEQTARLAQLREGALY 78
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
L+ + + +G + +I + + + + F+ LA+ G+ K++
Sbjct: 79 ALIERQLVLSEFDKLGGSIKPQYIDDDINGI---VRDNFEGNREKFLMELAKTGMTLKKF 135
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ KM+ + + + P + ++ D + + P
Sbjct: 136 REQRQKMMVVSVLRARQTKDLAPPTPAQVEEFYRKNADKFRDKDYIKFSTITIPKYP 192
>gi|77361548|ref|YP_341123.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas
haloplanktis TAC125]
gi|122070669|sp|Q3IFD3|SURA_PSEHT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|76876459|emb|CAI87681.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas
haloplanktis TAC125]
Length = 431
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + + S + ++ + E + L + ++ LV+ +
Sbjct: 28 DKVIGIVNQGVILKSEVDTIVNRVKKQAEEQ-----SQELPKDETLRVQAVERLVNQTLM 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E +GLE ++ +A G S + G + + Y + K +
Sbjct: 83 MQMAERMGLEISDSQLDQTLASMAKEQGG----SIADLRRTIEGSGESFQAYREEIRKEI 138
Query: 160 SRTDVVGMFVG 170
+ V+ V
Sbjct: 139 TTQQVMRANVD 149
>gi|39997591|ref|NP_953542.1| hypothetical protein GSU2496 [Geobacter sulfurreducens PCA]
gi|39984483|gb|AAR35869.1| hypothetical protein GSU2496 [Geobacter sulfurreducens PCA]
Length = 571
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 65/585 (11%), Positives = 143/585 (24%), Gaps = 84/585 (14%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMI---SQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V +V + + + S + + Q IL+ +++
Sbjct: 59 PVATVNDEPITVNDLNASLETVHEGMTEGKQAPRRNFTD-----------ILNRIITSKL 107
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q +IGL + KE ID +++
Sbjct: 108 IIQEGRNIGL----------------------------------DQQEQPKEMIDTFSRK 133
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L R V+ V +RP +++ + + N A + T +
Sbjct: 134 LLRELVLKDHVKDIRPDPKEVEKRYGQLNVEWTFSTLTFKNEEDAKKARKALDKGTSFDA 193
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ + + I D L+ + V
Sbjct: 194 LVAEEVKEKRAEAKQNEKLKYEHIHPDIVKIIDSLKPGAVGPVIDMQKGAMLFRLDAVKH 253
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+ + + A E+ ++ K+ I + K +
Sbjct: 254 SDDPKLKDRAEKETLTAARFKALEKFRTELIEKYFKQDKKLIKSLDFEKDKAGFLKFLED 313
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK-VKEDYKRLEEFLAL 397
+ G V+++ + + F +Q ++ KA + + E
Sbjct: 314 KRPLATIKGEKPVTVADLAEAIRMKFYHGVDMAIDQKKVNKAKDSLLFEILATRAIEKEG 373
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ + D G V+ + E L + +
Sbjct: 374 RDKGFDKKKEYLDKVTDYQESVIFGHFVEKVIRPDVKVTEDELKAYYEAHKSEYSYPIMV 433
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ DG A E++ + W V +KA ++
Sbjct: 434 VLDGIAF-----NDQNAAQSAAEKLRQGMDFKWFKENAEGHVDAKAAGVL---------- 478
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
Q + K + + + NG +YV+ V
Sbjct: 479 ---------------QFEDVPVTLKTLPEGLNKVITGAQTGEYRVYSDPNGFTYVIL-VR 522
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTV 618
N VQ + + + + + + L+ L+ V +
Sbjct: 523 NVIPEQVQSFPEVEATIRKNVQSEQLNKLVVEWADKLRKASDVKI 567
>gi|294085490|ref|YP_003552250.1| PPIC-type PPIASE domain-containing protein [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292665065|gb|ADE40166.1| PPIC-type PPIASE domain protein [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 278
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/226 (12%), Positives = 64/226 (28%), Gaps = 7/226 (3%)
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ + + + P+ D+ G V + K ++ +
Sbjct: 39 DQVMQAAEGLPPEYRNKPMQDYFGDIVADIIDTKLAAKAGEAAKLADDPLVQDAMKLASE 98
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDV------KKDWKTVKTAEEVSSKANQLVLEYSK 512
+ W+ + D L++ ++ A ++
Sbjct: 99 RILAEAWLAVTVREKMTDEALQQAYDTFVADEASREQITASHILVAAEDDAVAIIKSL-N 157
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
+G +F +I K N + F+ P P++ +
Sbjct: 158 DGADFAEIAKEKSTGPSGPNGGELGTFGRGQMVPAFETAAFALPAGGFSAKPVQTQFGWH 217
Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
V KV+ V P D L +++ L VI L++ ++ +
Sbjct: 218 VIKVSEKAVKPAPSFDAMRDQLVNSLSRQHLGRVIESLRADQTIEL 263
>gi|90411942|ref|ZP_01219950.1| putative survival protein SurA [Photobacterium profundum 3TCK]
gi|90327200|gb|EAS43572.1| putative survival protein SurA [Photobacterium profundum 3TCK]
Length = 434
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/208 (9%), Positives = 61/208 (29%), Gaps = 12/208 (5%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L + S V V + S + +++ + +
Sbjct: 8 LLGIAIWSLAA---SSMAAPKELDKVVTLVNDSVILQSDVNAMLQTVRINAAEQNQPLPD 64
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+ L +++++ L+ Q E G+ D R+ +A K+ + +
Sbjct: 65 NAL-----LTEQVMEKLIIETLQLQQAEQFGIRIDDTRLDQAVAEI----AKERELTIPQ 115
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
L + GI+ + + + ++ ++ + V +++ +
Sbjct: 116 LQQELEKSGISYSIFREQMRRDMTASEARTIQVRRRINILPQEVDMLAEQLNKQTLQTVQ 175
Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNY 224
N H+ + + + + +
Sbjct: 176 FNISHIQLRVEEGATKVQREETQQQAQQ 203
>gi|260550086|ref|ZP_05824300.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
gi|260406841|gb|EEX00320.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. RUH2624]
Length = 441
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 46/404 (11%), Positives = 100/404 (24%), Gaps = 55/404 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + L VL S F+ V V + S +
Sbjct: 9 KHLKQFFKATTLAVLISS------SMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEATHE 62
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI------- 119
+ + V L ++LD L+ + ++ G++ D + +
Sbjct: 63 LQSQKKEVPP-----QQYLQFQVLDQLILRQAQLEQVKRYGIKPDEKSLNEAVLKVASQS 117
Query: 120 --ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
F K + + + + R + +++SR + V S
Sbjct: 118 GSKSLEAFQQKLDAIAPGTYENLRGRIAEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQ 177
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADP----------------SNAVLTQWFEKYK 221
+ S A +
Sbjct: 178 GQAALGNQAHVIHMRISGDNPQEVQSVAKEVRSKLAQSNDLNALKKLSTATVKVEGADMG 237
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDE----LQAEYEKNKEKYFSPEIRTVEQLVF 277
+ ++ + + + + IS + L+ K E+ ++
Sbjct: 238 FRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLKLLERKQNEQKALVPQYQTRHILI 297
Query: 278 PN---------QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
++ D ++ LK G+ F LA SLG + +
Sbjct: 298 QPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSNDTGSARDGGSLGWVNPGMMVPE- 356
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
D G + FG+ I V++ + + +
Sbjct: 357 -FDKKMQEIPVGQISEPFQTQFGWHILQVTDKREKDMTHEYQER 399
Score = 42.5 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 21/286 (7%), Positives = 79/286 (27%), Gaps = 11/286 (3%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I +F + + A E ++++
Sbjct: 155 QQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQSVAKEVRSKLAQ 214
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ ++ + + L +++ DG ++
Sbjct: 215 SNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLK 274
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + + + T + + E + + + + K G++F +
Sbjct: 275 LLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 334
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK----CFPIENGLSYVVFKVTNSKVG 582
+ R + + F ++ + P + + + +VT+ +
Sbjct: 335 DTGSA----RDGGSLGWVNPGMMVPEFDKKMQEIPVGQISEPFQTQFGWHILQVTDKREK 390
Query: 583 PV--QEKDKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ + +++ + +DS + +++ V + D + +
Sbjct: 391 DMTHEYQERMARQILGERQFNTEIDSWLREVRANAYVEIKDPSLDK 436
>gi|148261608|ref|YP_001235735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
JF-5]
gi|146403289|gb|ABQ31816.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidiphilium cryptum
JF-5]
Length = 427
Score = 60.6 bits (144), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/201 (13%), Positives = 58/201 (28%), Gaps = 13/201 (6%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+++V+ L+ L L G +S V + + + +
Sbjct: 2 KSFVSYAALIGLAAGLLAPGAPA---RAQTASIAAVVNGTVITNADVAAR----TRLFAL 54
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
G S + L +I L+ + Q IE + ++ + R +
Sbjct: 55 SAGLPTTSATLQR--LKPQITRELIDQSLQLQAIERNKVVVPEAKIAAALKRV----NEA 108
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
N +LA GI + + + TDV+ +G A+ +
Sbjct: 109 NHLPPGSLQKKLAAAGIPLSTLVSQFRTQIGWTDVLRKKLGPDLRPTAADIAAEEAAMKK 168
Query: 190 RSVDYIVLNNRHVPAIADPSN 210
+ +P++
Sbjct: 169 EIGKTQYHIAEIFIPVENPAD 189
>gi|319408175|emb|CBI81828.1| peptidyl-prolyl cis-trans isomerase [Bartonella schoenbuchensis R1]
Length = 316
Score = 60.6 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 2/197 (1%)
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
K + A E+ + + D ++ L + + + + A + L +
Sbjct: 90 KAYLDMQAFAKAAIEKGIDKTEVYDKRMAIMRDNVLQQLYFKQMVVDKIQDADLQALYDK 149
Query: 483 LTDVKKDWKTVKTAEEV--SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
VK + + +A + +++ K+G++F +I K + +
Sbjct: 150 EVAALPKEDEVKARHILVKTKEAAEAIIKRLKKGESFEEIAKKDSTDGSASVGGDLGYFS 209
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
FS V P+E+ + + KV + + D L + K
Sbjct: 210 YGQMVKPFEDAAFSLKVGEYTKKPVESPFGWHIIKVEDRRPKQPPAFDDVKEVLRTQIMK 269
Query: 601 DLLDSVIAYLKSQYSVT 617
D ++I L+++ V
Sbjct: 270 DRYHALIIDLRNKVDVK 286
>gi|293608269|ref|ZP_06690572.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828842|gb|EFF87204.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 441
Score = 60.6 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 49/404 (12%), Positives = 106/404 (26%), Gaps = 55/404 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + L L S F+ V V + S +
Sbjct: 9 KHLKQFFKATTLAALISS------SMHSFAQPADEVVAIVDNSVILKSDLQQGMAEAAHE 62
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI------- 119
+ + V L ++LD L+ + ++ G++ D + +
Sbjct: 63 LQAQKKEVPP-----QQYLQFQVLDQLILREAQLEQVKKYGIKPDEKSLNEAVLKVASQS 117
Query: 120 --ARSPLFHGKDNKFSHDVFV------------SRLAREGINEKEYIDHYTKMLSRTDVV 165
F K + + + SRL ++ + + I
Sbjct: 118 GSKSLEAFQQKLDAMAPGTYESLRNRIAEDLAISRLRQQQVMSRIKISDQDVENFLKSPQ 177
Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
G G + + + + E +SV V + + + T + +
Sbjct: 178 GQAALGNQAHVIHMRISGDNAQEVQSVAQEVRSKLAQSNDINALKKLSTANVKVEGADMG 237
Query: 226 APEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPEIRTVEQLVF 277
I L + + ++ L+ K E+ ++
Sbjct: 238 FRPLSDIPAELAARITPLQDGQTTDLVSVRDGVHVLKLLERKQNEQKALVPQFQTRHILI 297
Query: 278 PN---------QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
++ D ++ LK G+ F LA SLG + +
Sbjct: 298 QPSEVVTLENAKQIIDNIYKRLKAGQDFATLAATYSNDTGSARDGGSLGWVTPGMMVPE- 356
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
D G+ + FG+ I V++ + + +
Sbjct: 357 -FDKQMQEIPVGEISEPFQTQFGWHILQVTDKREKDMTHEYQER 399
Score = 41.0 bits (93), Expect = 0.54, Method: Composition-based stats.
Identities = 38/388 (9%), Positives = 124/388 (31%), Gaps = 9/388 (2%)
Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
++ + + ELQA+ ++ + + + ++ Q E + + K + +
Sbjct: 53 QQGMAEAAHELQAQKKEVPPQQYLQFQVLDQLILREAQLEQVKKYGIKPDEKSLNEAVLK 112
Query: 303 QGKSLSDISLGSFSKE-YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
SL +F ++ +S+ + + + +S+
Sbjct: 113 VASQSGSKSLEAFQQKLDAMAPGTYESLRNRIAEDLAISRLRQQQVMSRIKISDQDVENF 172
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA 421
+ + + + NQ + + + + + + + + + V
Sbjct: 173 LKSPQGQAALGNQAHVIHMRISGDNAQEVQSVAQEVRSKLAQSNDINALKKLSTANVKVE 232
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
G D+ + ++ IP L V++ DG ++ ++ + + +
Sbjct: 233 GADMGFRPLSDIPA---ELAARITPLQDGQTTDLVSVRDGVHVLKLLERKQNEQKALVPQ 289
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNE 540
T + E + + + + K G++F + + + +
Sbjct: 290 FQTRHILIQPSEVVTLENAKQIIDNIYKRLKAGQDFATLAATYSNDTGSARDGGSLGWVT 349
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV--QEKDKFISYLTQMM 598
+ Q+ PV + P + + + +VT+ + + + +++ +
Sbjct: 350 PGMMVPEFDKQMQEIPVGEI-SEPFQTQFGWHILQVTDKREKDMTHEYQERMARQILGER 408
Query: 599 N-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+DS + +++ V + D + +
Sbjct: 409 QFNTEIDSWLREVRANAYVEIKDPSLDK 436
>gi|261408078|ref|YP_003244319.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
Y412MC10]
gi|261284541|gb|ACX66512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
Y412MC10]
Length = 390
Score = 60.6 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 71/233 (30%), Gaps = 11/233 (4%)
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
L + + E ++++ + + + D A+ P +EQ + L
Sbjct: 138 KQTLNSMITEELIQQELKNKSITVTDADVNKEVDALKASFPSEEQFNMALQQNGMTLDNL 197
Query: 454 HT-----VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
V L +++ + + + + E +A +V
Sbjct: 198 KEQTKTQVELKKLMADKIKVTDEEVKEVYDQNKESFATPEQVRASHILVETKEEAEAIVK 257
Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
+ KEG +F I K + F + + P+++
Sbjct: 258 QL-KEGADFATIAKEKNQDATKDTGGDLNFFGRGEMDPAFEEAAFKLKKDEI-SEPVKSS 315
Query: 569 LSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
Y + KVT+ K +K++ S L + I LK + ++T
Sbjct: 316 FGYHIIKVTDRKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDKATIT 368
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 48/163 (29%), Gaps = 28/163 (17%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
S+ W+ + L ++ + SG+ + V + + + G
Sbjct: 81 NGSKGWMIASLV--LAAALIVVLIVPPFAKGSGNEAIAKVNDVNITKDNLYDELVSVGG- 137
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
K+ L+++++ + Q +++ + V E+
Sbjct: 138 --------------------KQTLNSMITEELIQQELKNKSITVTDADVNKEVDALKASF 177
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
+ +F+ L + G+ + + ++ +
Sbjct: 178 PSEEQFN-----MALQQNGMTLDNLKEQTKTQVELKKLMADKI 215
>gi|301061946|ref|ZP_07202675.1| SurA N-terminal domain protein [delta proteobacterium NaphS2]
gi|300443963|gb|EFK07999.1| SurA N-terminal domain protein [delta proteobacterium NaphS2]
Length = 316
Score = 60.6 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/188 (12%), Positives = 48/188 (25%), Gaps = 8/188 (4%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
I + S V V + ++ + Q+ G ++ E+
Sbjct: 1 MFSLAILSWPASAEEKPASEKVAVVNGDVITRANLDRAMDFAKRQSMQQ-GKPLDEEQLA 59
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
+ L K+ LD L+ L Q + G + D +V K + + +
Sbjct: 60 A--LKKETLDKLIGIELLYQASKKAGNKVDEKQVDE-----KFAQFKKRFPNEEALQKTM 112
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
+ E + K + V +A + H
Sbjct: 113 EEWHVTEADMKAELKKGMVTEAFVMKNFVDKTTIPEEEVKAYYDSHPQFFKQPEQVKASH 172
Query: 202 VPAIADPS 209
+ P
Sbjct: 173 ILIKVKPD 180
Score = 52.2 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 7/238 (2%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ K+ + ++ ++ +K + L + + K+ ++ F
Sbjct: 76 YQASKKAGNKVDEKQVDEKFAQFKKRFPNEEALQKTMEEWHVTEADMKAELKKGMVTEAF 135
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+ + K +Y + K +L VK D + AE +
Sbjct: 136 VMKNFVDKTTIPEEEVKAYYDSHPQFFKQPEQVKASHILIKVKPDATEAEKAEAMKKI-- 193
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
+ + EG++F ++ K + + FS V
Sbjct: 194 EKAQDKLLEGEDFAEVAKTTSEGPSASKGGDLGYFGRGQMVKPFEDVAFSLEPGKV-SDV 252
Query: 565 IENGLSYVVFKVTNSKV----GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
++ Y + KV + K K + +L Q + + I L+ V +
Sbjct: 253 VKTQFGYHLIKVVDKKPETTIPLETVKPRIEQFLKQQEVQKEIKKYIDNLRKGAKVEI 310
>gi|291166314|gb|EFE28360.1| peptidylprolyl isomerase Pr [Filifactor alocis ATCC 35896]
Length = 365
Score = 60.6 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 34/282 (12%), Positives = 87/282 (30%), Gaps = 4/282 (1%)
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
Y + +I + S + ++ ++++ +E ++
Sbjct: 52 YEMQFGPDIWNTEIESGVTFSQKFQEEILEKMINDEIILQDAAKKELTVSVEEINTQFDE 111
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
K + + ++ + D + ++ Y
Sbjct: 112 LKKSIDSQEQFKSILESNGIDDEFLKEQVKKDMTVKKYYDTLMQENEVKEDEVRKYYDEH 171
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN--QLVLEYSKEGKNFRDIGKNLG 525
I E ++ + + D + EEV+ K + VL +K G+NF D+
Sbjct: 172 IDEFTSSQVKASHILFAKKDFDKNEELSKEEVAKKKELAEKVLGMAKNGQNFADLAMKYS 231
Query: 526 ASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
+ + + + FS + +E + + K+ + K V
Sbjct: 232 DDTGSAKNGGDLGYFDKNTMVKEFSDAAFSMKQGDISDSIVETEFGFHIIKLFDKKE-NV 290
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ + + + +SVI LK V ++++I++
Sbjct: 291 EKFEDVKQSIASNLQYQKYESVIDGLKKAAKVKKNEDVIKKV 332
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/204 (13%), Positives = 57/204 (27%), Gaps = 11/204 (5%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K+ V+ L G S G V SV QK+ + + + G
Sbjct: 6 KVIASVVSATLLFAGCS------IGGDAVASVNGQKIGKDVYEKTLGLYSPSYEMQFGPD 59
Query: 75 VNSERARS-----VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + S ++IL+ +++ + Q L + +
Sbjct: 60 IWNTEIESGVTFSQKFQEEILEKMINDEIILQDAAKKELTVSVEEINTQFDELKKSIDSQ 119
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+F + + + E + E+ D K T + V + F
Sbjct: 120 EQFKSILESNGIDDEFLKEQVKKDMTVKKYYDTLMQENEVKEDEVRKYYDEHIDEFTSSQ 179
Query: 190 RSVDYIVLNNRHVPAIADPSNAVL 213
+I+ + + S +
Sbjct: 180 VKASHILFAKKDFDKNEELSKEEV 203
>gi|329901823|ref|ZP_08272915.1| Peptidyl-prolyl cis-trans isomerase domain protein
[Oxalobacteraceae bacterium IMCC9480]
gi|327549006|gb|EGF33618.1| Peptidyl-prolyl cis-trans isomerase domain protein
[Oxalobacteraceae bacterium IMCC9480]
Length = 244
Score = 60.6 bits (144), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 58/188 (30%), Gaps = 9/188 (4%)
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK--------D 489
Q ++ + K + + + + ++ + K +
Sbjct: 58 QEADKLGLGNSADVKSQLEIARQSLVIRALVGDYVKKHPVSDADIKAEYDKFKATAGDKE 117
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
++ E +A ++++ K G F D+ K N + F
Sbjct: 118 YRARHILVEKEDEAKAIIVKL-KAGAKFEDLAKASKDPGSAANGGDLDWASPASFVKPFS 176
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ + P++ + V K+ +++ V ++ +++ + + L
Sbjct: 177 DAMVALAKGSYTEVPVKTQFGFHVIKLEDTRAAKVPTLEEVKPQISESLQQKKLQEYQQE 236
Query: 610 LKSQYSVT 617
L+++ V
Sbjct: 237 LRAKAKVQ 244
Score = 42.2 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 11/73 (15%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V + +P S + +A + L K + + L++ L
Sbjct: 9 QNLAVVNGKSIPSS-----------RADLMVKQAATQGQADTPELRKMVKEELINREVLV 57
Query: 101 QFIEDIGLEADHG 113
Q + +GL
Sbjct: 58 QEADKLGLGNSAD 70
>gi|156973131|ref|YP_001444038.1| hypothetical protein VIBHAR_00810 [Vibrio harveyi ATCC BAA-1116]
gi|156524725|gb|ABU69811.1| hypothetical protein VIBHAR_00810 [Vibrio harveyi ATCC BAA-1116]
Length = 427
Score = 60.3 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + K L +++ G + S L ++++ L+
Sbjct: 25 DKVAVIVNDGVILQSDIDTAMK-TLQANARQSGKSLPSASV----LKDQVVEKLIIDTLQ 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E IG+ D R+ IA ++N S + + + EG++ E+ + K +
Sbjct: 80 GQEAERIGVRIDDNRLNQAIAEI----ARNNNQSVEQLAASVQAEGLSYSEFREQIRKEI 135
Score = 37.5 bits (84), Expect = 6.5, Method: Composition-based stats.
Identities = 27/249 (10%), Positives = 68/249 (27%), Gaps = 15/249 (6%)
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
K +V+ + L + L G E++ L D+ +
Sbjct: 182 FSDDKDKSEVEAEANALVKKLKDGADFSEMAYTYSKGPKALQGGDWGWMRKEEMP----- 236
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTV 493
+F K + ++I++ + EV + +
Sbjct: 237 ----TIFADQIKMQNKGSIIGPFRSGIGFHILKIEDVKGLETVAVTEVNARHILIKPTVI 292
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQV 552
+ + + N+ + F + + Q + + + QV
Sbjct: 293 LSDDGAKKELNEFIRRIKAGEATFGQLATQYSQDPGSAAQNGELGYQTPDLYVPEFKHQV 352
Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ PV + P + + + +V + K+K L + + +
Sbjct: 353 ETLPVGSI-SAPFKTVHGWHIVEVLDRRQVDRTDSAMKNKAYRILFNRKFNEEAGAWMQE 411
Query: 610 LKSQYSVTV 618
L++ V +
Sbjct: 412 LRASAFVEI 420
>gi|257094858|ref|YP_003168499.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047382|gb|ACV36570.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 269
Score = 60.3 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 52/163 (31%), Gaps = 9/163 (5%)
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKK--------DWKTVKTAEEVSSKANQLVLEYSKEG 514
Y+ +++ + E+ ++ ++K E A +++ K+G
Sbjct: 108 YIRAFVQDYVKKNPISDEQAKAAYERMKSQMGSTEYKVRHILVEKEDDAKTIIVNL-KKG 166
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
F ++ K + + + V P++ Y V
Sbjct: 167 AKFDELAKQSKDPGSKEKGGDLGWSSTANYVKPFGDAVAGLAKGKFTETPVKTDFGYHVI 226
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V +S+ D+ + Q + ++ L +A L+ + +
Sbjct: 227 LVEDSRPLTPPPFDQIKPQINQRLQQEQLQKYVAELQKKAKID 269
Score = 38.7 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 11/64 (17%)
Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE 104
+V + + Q G + E L K + + L+ L Q +
Sbjct: 38 TVNGVAIS-----QTVANAFVAEQQAQGAPDSPE------LKKAVREELIRRELLVQEAK 86
Query: 105 DIGL 108
+GL
Sbjct: 87 KLGL 90
>gi|332187280|ref|ZP_08389019.1| hypothetical protein SUS17_2464 [Sphingomonas sp. S17]
gi|332012701|gb|EGI54767.1| hypothetical protein SUS17_2464 [Sphingomonas sp. S17]
Length = 296
Score = 60.3 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 15/143 (10%), Positives = 41/143 (28%), Gaps = 13/143 (9%)
Query: 10 RTWVAKIF---LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
R+ + L ++ + ++ +V + + I
Sbjct: 22 RSLILYAISAVLGLIIAGYGLFTAQGTRVGGIAPENAATVNGAPILRADLIQQVGSLYS- 80
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
++ +A + +K LD+++ Q ++GL AD V + +
Sbjct: 81 --------ISFAQASAAQ-RRKALDDMIREELHVQRGIEVGLPADDIDVRAALVGATDAQ 131
Query: 127 GKDNKFSHDVFVSRLAREGINEK 149
+ + + L +
Sbjct: 132 VAQDTLTEQPSAAELRAWYVAHP 154
>gi|153834210|ref|ZP_01986877.1| chaperone SurA [Vibrio harveyi HY01]
gi|148869398|gb|EDL68404.1| chaperone SurA [Vibrio harveyi HY01]
Length = 427
Score = 60.3 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + K L +++ G + S L ++++ L+
Sbjct: 25 DKVAVIVNDGVILQSDIDTAMK-TLQANARQSGKSLPSASV----LKDQVVEKLIIDTLQ 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E IG+ D R+ IA ++N S + + + EG++ E+ + K +
Sbjct: 80 GQEAERIGVRIDDNRLNQAIAEI----ARNNNQSVEQLAASVQAEGLSYSEFREQIRKEI 135
Score = 38.3 bits (86), Expect = 4.1, Method: Composition-based stats.
Identities = 27/249 (10%), Positives = 68/249 (27%), Gaps = 15/249 (6%)
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
K +V+ + L + L G E++ L D+ +
Sbjct: 182 FSDDKDKSEVEAEANALVQKLKDGADFSEMAYTYSKGPKALQGGDWGWMRKEEMP----- 236
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTV 493
+F K + ++I++ + EV + +
Sbjct: 237 ----TIFADQIKMQNKGSIIGPFRSGIGFHILKIEDVKGLETVAVTEVNARHILIKPTVI 292
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQV 552
+ + + N+ + F + + Q + + + QV
Sbjct: 293 LSDDGAKKELNEFIRRIKAGEATFGQLATQYSQDPGSAAQNGELGYQTPDLYVPEFKHQV 352
Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ PV + P + + + +V + K+K L + + +
Sbjct: 353 ETLPVGSI-SAPFKTVHGWHIVEVLDRRQVDRTDSAMKNKAYRILFNRKFNEEAGAWMQE 411
Query: 610 LKSQYSVTV 618
L++ V +
Sbjct: 412 LRASAFVEI 420
>gi|108760198|ref|YP_628739.1| putative foldase protein PrsA [Myxococcus xanthus DK 1622]
gi|108464078|gb|ABF89263.1| putative foldase protein PrsA [Myxococcus xanthus DK 1622]
Length = 349
Score = 60.3 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/188 (12%), Positives = 51/188 (27%), Gaps = 13/188 (6%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSD---ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG-- 65
+ + + G+ + + V SV + + + F +EL
Sbjct: 21 SPTRAFLVPLAIALAAGVGMPACTKPVMETPEALVVASVNGEVLSRADFEQELWRELALT 80
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+SQ+ V + +LD + L Q + V + R
Sbjct: 81 DVSQRTLEDVEP-------FKRALLDTYIHRMLLLQEARKHNVTVTPEEVDRGVLRLSG- 132
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
F+ + +L+ + +E + L + V ++
Sbjct: 133 DYPAGNFNEVLAQGQLSMAELRSREASRLTIEKLFASHVYSRVAVTEEELRAWYGAHEKD 192
Query: 186 YFENRSVD 193
+ E V
Sbjct: 193 FHEPEQVH 200
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/266 (13%), Positives = 75/266 (28%), Gaps = 13/266 (4%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
++A + E V+ + L + + + +R+ + VD + G
Sbjct: 76 ELALTDVSQRTLEDVEPFKRALLDTYIHRMLLLQEARKHNVTV-TPEEVDRGVLRLSGDY 134
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE---SIPARDRKLEEVLTDV 486
A ++L + L L + R
Sbjct: 135 PA--GNFNEVLAQGQLSMAELRSREASRLTIEKLFASHVYSRVAVTEEELRAWYGAHEKD 192
Query: 487 KKDWKTVKTAEEVSSKANQL--VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
+ + V A+ V ++ + K GK F D+ + S +
Sbjct: 193 FHEPEQVHAAQIVVKGLDEARRLQTQLKSGKKFADLARRYSLSADAKVGGDLGFFPRGQM 252
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS----YLTQMMNK 600
VF V V + + +F+V K +E + S L +
Sbjct: 253 PPAFDEVVFKLGVGQV-SDVVSTEYGFHLFRVLERKPARKREFVEVRSLVEGKLLEQKRS 311
Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ L+ + V V++ +Q
Sbjct: 312 QAQETFEQELRQKAQVQVNEATLQAI 337
>gi|294012540|ref|YP_003546000.1| peptidyl-prolyl cis-trans isomerase SurA [Sphingobium japonicum
UT26S]
gi|292675870|dbj|BAI97388.1| peptidyl-prolyl cis-trans isomerase SurA [Sphingobium japonicum
UT26S]
Length = 461
Score = 60.3 bits (143), Expect = 9e-07, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 14/143 (9%)
Query: 32 DALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
D V V + + + + G V+ E L
Sbjct: 57 DVTIFGKSDPNVRKATAIVNGRIITGTDVDQRLALIITA----NGGKVSDEE--KERLRV 110
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++L NL+ Q ++ D + R + + S F L ++G +
Sbjct: 111 QVLRNLIDETLQIQEAAANDIKVDKAEIDQSYERVAA----NFRQSPAQFDQYLRQQGSS 166
Query: 148 EKEYIDHYTKMLSRTDVVGMFVG 170
L+ + ++ +
Sbjct: 167 SASIKRQIEGELAWSRLLRRNIQ 189
Score = 41.4 bits (94), Expect = 0.50, Method: Composition-based stats.
Identities = 24/287 (8%), Positives = 72/287 (25%), Gaps = 10/287 (3%)
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
++ ++ + + + S K ++ S + + + +
Sbjct: 180 WSRLLRRNIQPFVNVSEDEVKSVVDRMNAAKGSDEFRIGEIYLSATPENQQQIIANARNI 239
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ + A G E + ++ V
Sbjct: 240 IDQIKQGGSFAAYARQFSEASTAAVGGDLGWVRPVQLPDELAQAAAEMQVGQIAGPIGVP 299
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV--LEYSKEGK 515
+ ++ + A R L + + T E+ S++A ++ K
Sbjct: 300 GGVSIIYVMDKRKVLTADPRDALLSLKQLSVSFPAGTTKEQASTRAAAFAAQVKAVKGCG 359
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
++G +GA ++ + + D + + V V
Sbjct: 360 QANELGGKIGADVVDNDNVKLRD-----LPPQLQDILLNLQVGEATPPFGSINDGVRVLV 414
Query: 576 V---TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
V + ++ ++ L + + L+ + +
Sbjct: 415 VCGRDEASSAAAPNAEQIMAQLEEERVNKRARIYLRDLRRDAVIDYN 461
>gi|269960923|ref|ZP_06175293.1| survival protein SurA [Vibrio harveyi 1DA3]
gi|269834363|gb|EEZ88452.1| survival protein SurA [Vibrio harveyi 1DA3]
Length = 427
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + K L +++ G + S L ++++ L+
Sbjct: 25 DKVAVIVNDGVILQSDINTAMK-TLQANARQSGKSLPSASV----LKDQVVEKLIIDTLQ 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E IG+ D R+ IA ++N S + + + EG++ E+ + K +
Sbjct: 80 GQEAERIGVRIDDNRLNQAIAEI----ARNNNQSVEQLAASVQAEGLSYPEFREQIRKEI 135
Score = 39.5 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 24/250 (9%), Positives = 66/250 (26%), Gaps = 6/250 (2%)
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
Q +I + +D + E + ++ + G
Sbjct: 172 QYKIGHIQLRFSDDKDKSEVEAEANALVKKLKDGADFSEMAYTYSKGPKALQGGDWGWMR 231
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ +F K + +++++ + EV +
Sbjct: 232 KEEMPTIFADQIKMQNKGSIIGPFRSGIGFHILKVEDVKGLETVAVTEVNARHILIKPTV 291
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQ 551
+ + E + N+ + F + + Q + + + Q
Sbjct: 292 ILSDEGAQKELNEFIRRIKAGEATFAQLATQYSQDPGSAAQNGELGYQTPDLYVPEFKHQ 351
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
V + PV + P + + + +V + K+K L + + +
Sbjct: 352 VETLPVGSI-SEPFKTVHGWHIVEVLDRRQVDRTDSAMKNKAYRILFNRKFNEEAGAWMQ 410
Query: 609 YLKSQYSVTV 618
L++ V +
Sbjct: 411 ELRASAFVEI 420
>gi|149186120|ref|ZP_01864434.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Erythrobacter sp.
SD-21]
gi|148830151|gb|EDL48588.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Erythrobacter sp.
SD-21]
Length = 448
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/180 (10%), Positives = 44/180 (24%), Gaps = 10/180 (5%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + + + +E + + ++L NL+ Q
Sbjct: 59 AVVNGYVITGTDLDQRLALLVNANQ----TEIPAEELQR--VRAQVLRNLIDETLQIQAA 112
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
E + V AR + + + + LA G + L+
Sbjct: 113 EAEEIVISDAEVEQTFARVAAQNNQR----PEDMENYLASIGSSSASLKRQIRGELAWQR 168
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
++ V + E + ++A + +K +
Sbjct: 169 LLRQKVSFFVNVSAEEVNELMERLEAAKGTDEYWLWEIFMSATPENDAAVQANAQKIMEQ 228
>gi|312792832|ref|YP_004025755.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179972|gb|ADQ40142.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 339
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/188 (12%), Positives = 53/188 (28%), Gaps = 4/188 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
V V+ + LI + + V + V V +K+ F +++ ++
Sbjct: 2 DKRTKIVLFSIAAVVLLIILIAVTPEIVRYVDENRAVAIVNGEKITKKEFAINYRSQINY 61
Query: 67 IS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ ++ + + +LD L+ Q + +
Sbjct: 62 YGLDKAFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQARKRNITLSSAEKKAIDQQIEQ 121
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
+ S F L G E EY D K + + + S+ ++
Sbjct: 122 YKSDSQ--SGAEFKQYLQTIGATENEYKDQVIKSQIVSKLYDEVTKNQKASDAEIESYYN 179
Query: 185 FYFENRSV 192
+ +
Sbjct: 180 SHKSDFVE 187
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 5/245 (2%)
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
Q + + L++ ++ ++ I+ D +
Sbjct: 75 DKTYEQQIKENVLDGLIIRQIELQQARKRNITLSSAEKKAIDQQIEQYKSDSQSGAEFKQ 134
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
+ I E K +SK + + +I+ + EV
Sbjct: 135 YLQTIGATENEYKDQVIKSQIVSKLYDEVTKNQKASDAEIESYYNSHKSDFVEVKASHIL 194
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN-----QINRMDNENKF 543
E K + +L+ K G+NF + + T R + ++
Sbjct: 195 FKVNDSKEEAAKKKKAEEILQMIKVGQNFEKLAQKYSEDETTKQKGGDMGYLRKNIIIQY 254
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603
+G + + VFS + + N +++ ++ KD+ S + +
Sbjct: 255 YGNEFGNAVFSLGIGEISNIVQTNDGFHIIKVTDRKQLLLSDVKDEIKSTIESQKKDEYY 314
Query: 604 DSVIA 608
S++
Sbjct: 315 QSLLE 319
>gi|163802667|ref|ZP_02196558.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Vibrio sp. AND4]
gi|159173555|gb|EDP58375.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Vibrio sp. AND4]
Length = 427
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + K L +++ G + S L +++++ L+
Sbjct: 25 DKVAVIVNDGVILQSDIDTAMK-TLQANARQSGKSLPSAGV----LKEQVVEKLIIDTLQ 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG+ D R+ IA ++N S + + + EG+N E+ + K +
Sbjct: 80 GQEAKRIGVRIDDNRLNQAIAEI----ARNNNQSVEQLAASVQMEGLNYSEFREQIRKEI 135
>gi|315127730|ref|YP_004069733.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas sp.
SM9913]
gi|315016244|gb|ADT69582.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas sp.
SM9913]
Length = 431
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 9/135 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + + S + ++ N + + L + ++ LV+ +
Sbjct: 28 DKVIGIVNQGVILKSEVDTIVDRVKKQAEKQ-----NQQLPKDETLRVQAIERLVNQTLM 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E +GLE ++ +A G + G + + Y + K +
Sbjct: 83 MQMAERMGLEISDSQLDQTLANMAKEQGGTI----ADLRRTIEASGESFQAYREEIRKEI 138
Query: 160 SRTDVVGMFVGGMRP 174
+ V V
Sbjct: 139 TTQQVTRANVDRRIY 153
>gi|298506530|gb|ADI85253.1| conserved hypothetical protein [Geobacter sulfurreducens KN400]
Length = 572
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 65/582 (11%), Positives = 144/582 (24%), Gaps = 78/582 (13%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V +V + + + S + + + G IL+ +++ + Q
Sbjct: 60 PVATVNDEPITVNDLNASLETVHEGMME--GKQAPRRNFTD------ILNRIITSKLIIQ 111
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+IGL + KE ID +++ L R
Sbjct: 112 EGRNIGL----------------------------------DQQEQPKEMIDTFSRKLLR 137
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
V+ V +RP +++ + + N A + T +
Sbjct: 138 ELVLKDHVKDIRPDPKEVEKRYGQLNVEWTFSTLTFKNEEDAKKARKALDKGTSFDALVA 197
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ + + I D L+ + V +
Sbjct: 198 EEVKEKRAEAKQNEKLKYEHIHPDIVKIIDSLKPGSVGPVIDMQKGAMLFRLDAVKHSDD 257
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ + A E+ ++ K+ I + K +
Sbjct: 258 PKLKDRAEKETLTAARFKALEKFRTELIEKYFKQDKKLIKSLDFEKDKAGFLKFLEDKRP 317
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK-VKEDYKRLEEFLALGTS 400
+ G V+++ + + F +Q ++ KA + + E
Sbjct: 318 LATIKGEKPVTVADLAEAIRMKFYHGVDMAIDQKKVNKAKDSLLFEILATRAIEKEGRDK 377
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + D G V+ + E L + + + D
Sbjct: 378 GFDKKKEYLDKVADYQESVIFGHFVEKVIRPDVKVTEDDLKAYYEAHKSEYSYPIMVVLD 437
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
G A E++ + W V +KA ++
Sbjct: 438 GIAF-----NDQNAAQSAAEKLRQGMDFKWFKENAEGHVDAKAAGVI------------- 479
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
Q + K + + + NG +YV+ V N
Sbjct: 480 ------------QFEDVPVTLKTLPEGLNKVITGAQTGEYRVYSDPNGFTYVIL-VRNVI 526
Query: 581 VGPVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTV 618
VQ + + + + + + L+ L+ V +
Sbjct: 527 PEQVQPFPEVEAAIRKNVQSEQLNKLVVEWADKLRKASDVKI 568
>gi|83591773|ref|YP_425525.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum
rubrum ATCC 11170]
gi|83574687|gb|ABC21238.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum
rubrum ATCC 11170]
Length = 444
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/505 (10%), Positives = 126/505 (24%), Gaps = 101/505 (20%)
Query: 17 FLVVLFVPFL-----IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
L + + ++ W + A +V V V + ++
Sbjct: 30 LLGIALLAWVAVLGCGWPVHTAQAAVPTQRIAAVVNEDAVSLYDLNAR----IDIVMATG 85
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
G + E L +IL L+ Q + + + G I R + NK
Sbjct: 86 GMPNSPE--VRQRLAPQILRALIDETLKIQEAKRANVTVSTEDINGGIERLE----RQNK 139
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
G++++ I L
Sbjct: 140 LPPGGLEKAFKAAGLDQQSLIHQIRAELG------------------------------- 168
Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
+I + + S ++ + + + N PEY L + + ++
Sbjct: 169 --WIKAVQSTLGPRVNVSEDEISLYQQNLQRNLGKPEYLVADIFLPVDNAAQDAEVLTAA 226
Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK---SLS 308
+ + ++ G F LA++ + +
Sbjct: 227 Q--------------------------------RMIEQMRLGANFAALAQQFSRGPAAQR 254
Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
LG I D + ++ G+ + I GY I + + + + + +K
Sbjct: 255 GGDLGWVGPGEI-DAEVLQALG-AMAPGNLSQPIRTFGGYHILLLRDQRIASGGASSLLK 312
Query: 369 KDIANQMRITKASEKVKEDYK--RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
+ + + D ++ S + +D
Sbjct: 313 MSRIVIPLRGPRMPTPERLADLRQRIAATRSCEAFDALAGEVGPPSGSMGSID------- 365
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
P + + +D P + T D + + + I + + + +
Sbjct: 366 -------PARLPAEAQNVIRDLPAGQPSTPLTMDNAEIRLMICDRPTGGLPGRDILRERL 418
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYS 511
+ + Q +++
Sbjct: 419 IEQKLQNLAQRRLRDLRQQAIIDIR 443
>gi|148264947|ref|YP_001231653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
uraniireducens Rf4]
gi|146398447|gb|ABQ27080.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
uraniireducens Rf4]
Length = 341
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/170 (11%), Positives = 52/170 (30%), Gaps = 9/170 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V V + + K + ++ + E + + LD L+S L
Sbjct: 50 TDPVAKVNDTIITRLDLDRAVKVLVSQ--NRLPQPLPPESLKQAE--EAALDQLISAELL 105
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + + +V +++++ S D F L + EK+ + K +
Sbjct: 106 YQAGQKTEIRDLEKQVEEKVSQNKAKFP-----SADEFEKALKSVEMTEKDLKEFTRKDV 160
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
++ + + + ++ + H+ + S
Sbjct: 161 VISNFIEKNIAEKTKVTEADAKKFYDDNPDKFKQEPSVKASHILCGVEAS 210
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 27/240 (11%), Positives = 77/240 (32%), Gaps = 22/240 (9%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
++ K++EE ++ + + + + + + K+ ++ ++ F
Sbjct: 115 RDLEKQVEEKVSQNKAKFPSADEFEKALKSVEMTEKDLKE---------FTRKDVVISNF 165
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT---AEEVSS 501
+ + K + + P + ++ V ++ +
Sbjct: 166 IEKNIAEKTKVTEADAKKFY-----DDNPDKFKQEPSVKASHILCGVEASATAEEKKKAK 220
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
+ + +L+ K G++F + K+ + + F+ V
Sbjct: 221 EKAEALLKKIKAGEDFATLAKSESTCPSSKQGGDLGFFSKGQMVAPFEKAAFALKPGEV- 279
Query: 562 CFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+E Y + K+T K G + K+K +YL + + + + LK + +
Sbjct: 280 SDVVETQFGYHIIKLTEKKEGGTIKFDEVKEKIENYLKNLKIQKAIGECLVELKGKAKIE 339
>gi|260878025|ref|ZP_05890380.1| chaperone protein SurA [Vibrio parahaemolyticus AN-5034]
gi|308089886|gb|EFO39581.1| chaperone protein SurA [Vibrio parahaemolyticus AN-5034]
Length = 427
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + K L +++ G + S L +++++ L+
Sbjct: 25 DKVAVIVNDGVILQSDINTAMK-TLQANARQSGKSLPSASV----LKEQVVEKLIIDTLQ 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG+ D R+ IA ++N S + + + EG++ E+ + K +
Sbjct: 80 GQEADRIGVRIDDNRLNQAIAEI----ARNNNQSVEELAASVQAEGLSYPEFREQIRKEI 135
Score = 38.3 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 26/230 (11%), Positives = 62/230 (26%), Gaps = 15/230 (6%)
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
L G E++ L D+ + +F K
Sbjct: 201 KLNDGADFTEMAYTYSKGPKALQGGDWGWMRKEEMP---------TIFADQIKMQNKGSI 251
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSK 512
+ ++I++ + EV + + + E ++ N+ V
Sbjct: 252 IGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKNQLNEFVRRIKA 311
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSY 571
F + + Q + + + QV + PV + P + +
Sbjct: 312 GEATFAQLASQYSQDPGSAAQDGELGYQTPDLYVPEFKHQVETLPVGSI-SEPFKTVHGW 370
Query: 572 VVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ +V + K+K L + + + L++ V +
Sbjct: 371 HIVEVLDRRQVDRTDSAMKNKAYRILFNRKFNEEAGAWMQELRASAFVEI 420
>gi|28897112|ref|NP_796717.1| survival protein SurA [Vibrio parahaemolyticus RIMD 2210633]
gi|153838965|ref|ZP_01991632.1| chaperone SurA [Vibrio parahaemolyticus AQ3810]
gi|260361686|ref|ZP_05774713.1| chaperone protein SurA [Vibrio parahaemolyticus K5030]
gi|260896920|ref|ZP_05905416.1| chaperone protein SurA [Vibrio parahaemolyticus Peru-466]
gi|260903392|ref|ZP_05911787.1| chaperone protein SurA [Vibrio parahaemolyticus AQ4037]
gi|81728608|sp|Q87ST4|SURA_VIBPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|28805321|dbj|BAC58601.1| survival protein SurA [Vibrio parahaemolyticus RIMD 2210633]
gi|149747553|gb|EDM58485.1| chaperone SurA [Vibrio parahaemolyticus AQ3810]
gi|308088746|gb|EFO38441.1| chaperone protein SurA [Vibrio parahaemolyticus Peru-466]
gi|308109029|gb|EFO46569.1| chaperone protein SurA [Vibrio parahaemolyticus AQ4037]
gi|308115514|gb|EFO53054.1| chaperone protein SurA [Vibrio parahaemolyticus K5030]
gi|328471910|gb|EGF42787.1| survival protein SurA [Vibrio parahaemolyticus 10329]
Length = 427
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + K L +++ G + S L +++++ L+
Sbjct: 25 DKVAVIVNDGVILQSDINTAMK-TLQANARQSGKSLPSASV----LKEQVVEKLIIDTLQ 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG+ D R+ IA ++N S + + + EG++ E+ + K +
Sbjct: 80 GQEADRIGVRIDDNRLNQAIAEI----ARNNNQSVEELAASVQAEGLSYPEFREQIRKEI 135
Score = 39.1 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 26/230 (11%), Positives = 61/230 (26%), Gaps = 15/230 (6%)
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
L G E++ L D+ + +F K
Sbjct: 201 KLNDGADFTEMAYTYSKGPKALQGGDWGWMRKEEMP---------TIFADQIKMQNKGSI 251
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSK 512
+ ++I++ + EV + + + E + N+ V
Sbjct: 252 IGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRRIKA 311
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSY 571
F + + Q + + + QV + PV + P + +
Sbjct: 312 GEATFAQLASQYSQDPGSAAQDGELGYQTPDLYVPEFKHQVETLPVGSI-SEPFKTVHGW 370
Query: 572 VVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ +V + K+K L + + + L++ V +
Sbjct: 371 HIVEVLDRRQVDRTDSAMKNKAYRILFNRKFNEEAGAWMQELRASAFVEI 420
>gi|125973074|ref|YP_001036984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum ATCC 27405]
gi|256004577|ref|ZP_05429555.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum DSM 2360]
gi|281417269|ref|ZP_06248289.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum JW20]
gi|125713299|gb|ABN51791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum ATCC 27405]
gi|255991449|gb|EEU01553.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum DSM 2360]
gi|281408671|gb|EFB38929.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum JW20]
gi|316940705|gb|ADU74739.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum DSM 1313]
Length = 413
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/377 (11%), Positives = 113/377 (29%), Gaps = 31/377 (8%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV---GLDKKILDNLVS 95
S + V +++ + F + Q+ + + K++L L+
Sbjct: 53 ASKVIAEVNGEQILYKDFYFIYSQQAAYYGLTTEDEDSLSDDTKEILNTIKKELLTQLIQ 112
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
Q ++ G E R+ + E+ +
Sbjct: 113 QKLAKQKAKEAGYEVTKERLDEASEAIEEMIRN-----------------MAEQMKLSSP 155
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
++ SR + + + + + + ++ + +
Sbjct: 156 SEAESRDFLKEARDFINSELKAMRITMDEYIRDTAEYMIVTDFMEDLTKDIVVTDEEIKK 215
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
++++ + + + + +++ L E ++ + S +
Sbjct: 216 YYDEQLKIQQENPEEAAYAEVQLIQPASSRVKHILIALPEEEQQEYQNLKSEGKDEEAEA 275
Query: 276 VFPN-----QKEADEAFQSLKKGKKFIQLAEEQGKSL-----SDISLGSFSKEYIPDVSL 325
+ +A+E K G+ F L +E G+ + +K S
Sbjct: 276 YLKEKLEAIKPKAEEVLNKAKNGEDFEALIKEYGEDPGMESEQYKDGYTVTKNSGFIKSF 335
Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
D+ +L G+ + ++ G +GY I V + + +E K +I + ++ K + +
Sbjct: 336 EDASLALG-VGEISDLVEGPYGYHIIKVYEKTEAKPYTQEEKKSEIESLLKSQKKTNFMN 394
Query: 386 EDYKRLEEFLALGTSMD 402
E K E + D
Sbjct: 395 EKMKEWESASTIVRHDD 411
>gi|148555285|ref|YP_001262867.1| hypothetical protein Swit_2370 [Sphingomonas wittichii RW1]
gi|148500475|gb|ABQ68729.1| hypothetical protein Swit_2370 [Sphingomonas wittichii RW1]
Length = 286
Score = 60.3 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 11/80 (13%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ V +++ + + L K++L L+
Sbjct: 26 KGQILAIVNGEEISLQELNAELQGTR-----------IPDSVDRDKLRKQVLQRLIDRKL 74
Query: 99 LDQFIEDIGLEADHGRVWGE 118
+ Q + GL+ V +
Sbjct: 75 IVQKAREQGLDKTPEYVTQQ 94
>gi|237746912|ref|ZP_04577392.1| chaperone SurA [Oxalobacter formigenes HOxBLS]
gi|229378263|gb|EEO28354.1| chaperone SurA [Oxalobacter formigenes HOxBLS]
Length = 468
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/168 (10%), Positives = 58/168 (34%), Gaps = 10/168 (5%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+ + + ++ N L K++L++++ + Q +++
Sbjct: 59 NNDVITMGELNERIQMIESQLQKQ-----NVNLPPRAELQKQVLEHMIVESAQMQLAKEM 113
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
GL D ++ IAR + + F + R+G + + + + ++ +
Sbjct: 114 GLRIDDTQLDRTIARI----AESKHMTVPQFQQYIERDGTSFESHREKIRSEITMQRLRD 169
Query: 167 MFVGGM-RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
V + ++ +D + + + + L + + + S +
Sbjct: 170 REVVNKIQINDAEVDHLLGADSQMQMPEQVRLGHILIRIPENASPEQI 217
>gi|315500015|ref|YP_004088818.1| ppic-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
excentricus CB 48]
gi|315418027|gb|ADU14667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
excentricus CB 48]
Length = 423
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 10/128 (7%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
G V V + + + I V + ++ L L+
Sbjct: 40 GEGVVALVNDKLISSYDLKQRM------LLLIITSGVQVTQQNYAAFQQQALRALIDEHL 93
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ L + EIA + + S D ++ L R GI + D
Sbjct: 94 QLAEADHFKLNVSDEEIDEEIANM----AQQSGLSKDQLLAELKRAGIEAQTLRDQIKAE 149
Query: 159 LSRTDVVG 166
++ +V
Sbjct: 150 IAWGQLVN 157
>gi|253700324|ref|YP_003021513.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
gi|251775174|gb|ACT17755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
Length = 355
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/156 (16%), Positives = 49/156 (31%), Gaps = 8/156 (5%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLG 525
+++ +K E V K E KA + K G+ F + K+
Sbjct: 197 DDNLNTYFKKPESVKASHILVGTDEKATPEDRKKAKEKAEALLKRLQAGEEFAALAKDES 256
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
T N + + F + +E Y + KVT + +
Sbjct: 257 TCPSATQGGNLGEFGREEMVPQFEEAAFKLKPGEM-SGVVETKFGYHIIKVTGKQEAAAE 315
Query: 586 E----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ K+ + +L + + L S I LK + +
Sbjct: 316 KLESVKETIVEFLKKQKAQQELSSFIDKLKKEAKIE 351
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/352 (10%), Positives = 95/352 (26%), Gaps = 68/352 (19%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
S VV V + + K L KI + E + L+ L +
Sbjct: 60 KSPAVVRVNGTPITQLDVERAVKVMLAQ--NKIDQPLPPEL--QKQAESAALEQLTAAEL 115
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
L Q + + +++ + + V L+ + + + K
Sbjct: 116 LYQEASKSKIPDLDKMIEQKVS-----QNRQKFKTEAELVEALSALEMTLPDLEEFTRKE 170
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + + A S+ + ++++
Sbjct: 171 IVLSTYIAEHFQT---------------------------------KASVSDEEVKKFYD 197
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ Y + + +++ E
Sbjct: 198 DNLNTYFKKPESVKASHILVGTDEKATPEDRKKA------------------------KE 233
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+ + Q+ ++ + + +LG F +E + + K G+
Sbjct: 234 KAEALLKRLQAGEEFAALAKDESTCPSATQGGNLGEFGREEMVPQ--FEEAAFKLKPGEM 291
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+ V+ FGY I V+ + + + VK+ I ++ KA +++ +
Sbjct: 292 SGVVETKFGYHIIKVTGKQEAAAEKLESVKETIVEFLKKQKAQQELSSFIDK 343
>gi|83309610|ref|YP_419874.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
magneticum AMB-1]
gi|82944451|dbj|BAE49315.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
magneticum AMB-1]
Length = 320
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 50/149 (33%), Gaps = 6/149 (4%)
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ + K + +V +T E S L G +F ++ K
Sbjct: 163 KVRYDQAVKNFQPQEEVHARHILAETEEGARSIIADL-----NRGMDFAELAKTRSKDTG 217
Query: 530 T-TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + + + F+ + P++ Y V KV + ++ + D
Sbjct: 218 SGAMGGDLGYFVQGAMVPEFAAAAFAMRPGELSKTPVKTQFGYHVIKVEDKRMASIPPYD 277
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + + + ++L + ++ L+ + +
Sbjct: 278 QAKPVIARQIAEELQEKMVVELREKAKIK 306
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 5/163 (3%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
+++ ++ Y++ + + E ++ ++ A L +G F +LA+ + K
Sbjct: 158 TDEAVKVRYDQAVKNFQPQEEVHARHILAETEEGARSIIADLNRGMDFAELAKTRSKDTG 217
Query: 309 ----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
LG F + + A + F++ + FGY + V + + + +
Sbjct: 218 SGAMGGDLGYFVQGAMV-PEFAAAAFAMRPGELSKTPVKTQFGYHVIKVEDKRMASIPPY 276
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ K IA Q+ + V E ++ + + +
Sbjct: 277 DQAKPVIARQIAEELQEKMVVELREKAKIKRFKPDGTPLEAAK 319
>gi|21675072|ref|NP_663137.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium tepidum TLS]
gi|21648311|gb|AAM73479.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium tepidum TLS]
Length = 438
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/486 (10%), Positives = 118/486 (24%), Gaps = 72/486 (14%)
Query: 15 KIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K+ VL + G +DA S V VG + + S
Sbjct: 3 KVLFAVLAALMIAMNGFADAAASTGLDRIVAIVGNEIILASDVNEQELMLHLQY------ 56
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
E + L K+IL+N+++ + + ++ D V +
Sbjct: 57 ---PETRKDPQLRKRILENMINQKIILTKAKIDTVKVDEKSVDDQ--------------- 98
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
R + R + + + R
Sbjct: 99 -------------------AAARYSSLRAGFPSVSAMESRFGMPVNRLKQHIREDIRDQQ 139
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
I R S ++ + K + +
Sbjct: 140 MIEAFRRKNFHEVTVSYDETMAFYNQEKGALPEAPETVSVSQIIKMPLVS---------- 189
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q K + ++ + + S
Sbjct: 190 ----------------EAARQAALDKIKAVQQQLEAGGSFATLAREYSDDPGSREKGGDL 233
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
F+++ S ++ + K G + ++ FGY I + + + + + +
Sbjct: 234 GFTRKGELVPSFEEAAS-VLKPGQISGIVETRFGYHIIQLIDKEGDRIHTRHILALFDRS 292
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I +K K + A M + + + + L+ + +
Sbjct: 293 KTDIPATIALLKSIRKDVLSGKATFAEMAKKYSDDPASATNGGLITSGSGNPDLEVATLR 352
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVAL-PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
P +++ + K D + + Y + PA E +++
Sbjct: 353 PDLRKIIDGLKSKGDISQPEKIESDKSAPFYALFMLNSRTPAHVLTPEHDFAQIQELALN 412
Query: 493 VKTAEE 498
K+ E
Sbjct: 413 HKSQEL 418
>gi|54307618|ref|YP_128638.1| putative survival protein SurA [Photobacterium profundum SS9]
gi|81697526|sp|Q6LV39|SURA_PHOPR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|46912041|emb|CAG18836.1| putative survival protein SurA [Photobacterium profundum SS9]
Length = 434
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/191 (10%), Positives = 57/191 (29%), Gaps = 12/191 (6%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L + S V V + S + +++ +
Sbjct: 8 LLGIAIWSLAA---SSMAAPKELDKVVTLVNDSVILQSDVNAMLQTVRINAAEQ-NQPLP 63
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+ L +++++ L+ Q E G+ D R+ +A K+ + +
Sbjct: 64 DDAL----LTEQVMEKLIIETLQLQQAEQFGIRIDDTRLDQAVAEI----AKERELTIPQ 115
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
L + GI+ + + + ++ ++ + V + +++ +
Sbjct: 116 LQKELEKSGISYSIFREQMRRDMTASEARTIQVRRRINILPQEVEMLAEQLNKQTLQTVQ 175
Query: 197 LNNRHVPAIAD 207
N H+ +
Sbjct: 176 FNISHIQLRVE 186
>gi|319796618|ref|YP_004158258.1| sura domain [Variovorax paradoxus EPS]
gi|315599081|gb|ADU40147.1| SurA domain [Variovorax paradoxus EPS]
Length = 469
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 11/130 (8%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + + + + + + ++ER L + +L+ L+ Q
Sbjct: 65 IVALVNSEPITNTDVQSRVTRLIK-------ENPDAERVPRGELTRLVLERLIVERAQLQ 117
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
++ G++ D + + N+ S R+A EGI ++ L
Sbjct: 118 LAKENGIKVDDVAIDQAEQTV----ARQNEISLVELRRRVAAEGIALADFRKDLRDQLLL 173
Query: 162 TDVVGMFVGG 171
T + V
Sbjct: 174 TRLRDREVES 183
>gi|329923149|ref|ZP_08278648.1| putative foldase protein PrsA [Paenibacillus sp. HGF5]
gi|328941591|gb|EGG37877.1| putative foldase protein PrsA [Paenibacillus sp. HGF5]
Length = 398
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 70/233 (30%), Gaps = 11/233 (4%)
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
L + + E ++++ + + + D A+ P +EQ + L
Sbjct: 138 KQTLNSMITEELIQQELKNKSITVTDADVNKEVDALKASFPSEEQFNMALQQNGMTLDNL 197
Query: 454 HT-----VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
V L +++ + + + E +A +V
Sbjct: 198 KEQTKTQVELKKLMADKIKVTGEEVKEVYDQNKESFATPEQVRASHILVETKEEAEAIVK 257
Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
+ KEG +F I K + F + + P+++
Sbjct: 258 QL-KEGADFATIAKEKNQDATKDTGGDLNFFGRGEMDPAFEEAAFKLKKDEI-SEPVKSS 315
Query: 569 LSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
Y + KVT+ K +K++ S L + I LK + ++T
Sbjct: 316 FGYHIIKVTDRKEATNPTLEDKKEEIRSQLENQKVYAESTAYIQELKDKATIT 368
Score = 57.2 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 48/163 (29%), Gaps = 28/163 (17%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
S+ W+ + L ++ + SG+ + V + + + G
Sbjct: 81 NGSKGWMIASLV--LAAALIVVLIVPPFAKGSGNEAIAKVNDVNITKDNLYDELVSVGG- 137
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
K+ L+++++ + Q +++ + V E+
Sbjct: 138 --------------------KQTLNSMITEELIQQELKNKSITVTDADVNKEVDALKASF 177
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
+ +F+ L + G+ + + ++ +
Sbjct: 178 PSEEQFN-----MALQQNGMTLDNLKEQTKTQVELKKLMADKI 215
>gi|161619861|ref|YP_001593748.1| chaperone surA precursor [Brucella canis ATCC 23365]
gi|254704953|ref|ZP_05166781.1| chaperone surA precursor [Brucella suis bv. 3 str. 686]
gi|260567571|ref|ZP_05838041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 4
str. 40]
gi|261755654|ref|ZP_05999363.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3
str. 686]
gi|161336672|gb|ABX62977.1| Chaperone surA precursor [Brucella canis ATCC 23365]
gi|260157089|gb|EEW92169.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 4
str. 40]
gi|261745407|gb|EEY33333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brucella suis bv. 3
str. 686]
Length = 331
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/242 (9%), Positives = 70/242 (28%), Gaps = 11/242 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + +++ ID+ + + K + + + L
Sbjct: 78 DQAAGDLDPQFARLPVEQRRLAALAALIDIKAMAGEAEKDKLDQTKEFKDRMEFLRERAL 137
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + D KE + +V+ VKT EE +
Sbjct: 138 HNEYFKNAIVDKISDADVRARYDKEIAAMPPQV------EVRARHILVKTKEEA-----E 186
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+++ + G D+ K ++ + + F+ P+
Sbjct: 187 AIIKKLEGGAKSEDLAKASSTDGTASSGGDLGYFSEGQMVPEFEKAAFALKPGEYTKEPV 246
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ Y V ++ + + D+ + ++ ++ + L+ + D I++
Sbjct: 247 QTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGLKIDYKDPAIEK 306
Query: 626 YL 627
+
Sbjct: 307 AM 308
Score = 46.8 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 37/215 (17%), Positives = 82/215 (38%), Gaps = 6/215 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K+ E+ R + + + +IS+ +++A Y+K ++
Sbjct: 120 DQTKEFKDRMEFLRERALHNEYFKNAIVDKISDADVRARYDKEIAAMPPQVEVRARHILV 179
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G K LA+ S LG FS+ + + F+L
Sbjct: 180 KTKEEAEAIIKKLEGGAKSEDLAKASSTDGTASSGGDLGYFSEGQMV-PEFEKAAFALKP 238
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + + ++ +VK I + + + E VK+ L
Sbjct: 239 GEYTKEPVQTQFGYHVIQLEDRRTKQPPAYDQVKDQIRSIIMRERYIETVKKLRDGL--K 296
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ E + ++ + + D A +D +E
Sbjct: 297 IDYKDPAIEKAMKDAAAAQEASGKDDASEDDAPQE 331
>gi|162449311|ref|YP_001611678.1| peptidyl-prolyl cis-trans isomerase SurA [Sorangium cellulosum 'So
ce 56']
gi|161159893|emb|CAN91198.1| peptidyl-prolyl cis-trans isomerase SurA [Sorangium cellulosum 'So
ce 56']
Length = 338
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 4/134 (2%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V VG + + S + L I ++ + A + + +L +V
Sbjct: 28 SERIVAVVGDRAILLSDLRQRARPFLLQIQARV-PPGAQQAAAESQVFRDLLQKMVDEEL 86
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q E + + ++F + A G+ E+EY D +
Sbjct: 87 EGQAAEKANVRVTSEEIENAFRNIAAAEQMTV---EELFRTARASSGLTEQEYRDEIRRQ 143
Query: 159 LSRTDVVGMFVGGM 172
+ ++ + V G
Sbjct: 144 ILEGKMLQLRVKGR 157
>gi|88859123|ref|ZP_01133764.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas
tunicata D2]
gi|88819349|gb|EAR29163.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Pseudoalteromonas
tunicata D2]
Length = 430
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 9/135 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V +V V S + G + ++ A L + ++ L++ L
Sbjct: 28 DKVVATVNEGVVLQSEIDTIINRVKSRAL-TDGQSLPTDDA----LRLQAIERLINQELL 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E +GL+ ++ + G + G + + Y + +
Sbjct: 83 MQMSERMGLQISDAQLDQTLMMMAKEQGGTL----ADLRKTIESSGESYQAYREEMRVEM 138
Query: 160 SRTDVVGMFVGGMRP 174
+ V+ V
Sbjct: 139 TTQQVLRSNVERRIY 153
>gi|302039584|ref|YP_003799906.1| putative peptidylprolyl isomerase [Candidatus Nitrospira defluvii]
gi|300607648|emb|CBK43981.1| putative Peptidylprolyl isomerase [Candidatus Nitrospira defluvii]
Length = 344
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 42/144 (29%), Gaps = 6/144 (4%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R A+ + L + F++ +S+A + V V + S E
Sbjct: 30 VRSATGFTTTGALIFCLCLLFVL--ISNAEAAKLEDRIVAVVNSDLIMLSELKRDLLPEQ 87
Query: 65 GMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ + G + + + + ++ Q ++ G++ V +
Sbjct: 88 DRLRKLYKGEDLERRLKTAEAMG---VTKMIERKLQLQAAKNKGVDVSDQEVVQAVEEMK 144
Query: 124 LFHGKDNKFSHDVFVSRLAREGIN 147
+ + S + +
Sbjct: 145 KQGEAIDSADPNTARSIREQLTLM 168
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/286 (13%), Positives = 87/286 (30%), Gaps = 11/286 (3%)
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
V++ + ++ P + K + + T + V + +R + A
Sbjct: 64 RIVAVVNSDLIMLSELKRDLLPEQDRLRKLYKGEDLERRLKTAEAMGVTKMIERKLQLQA 123
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
++S +E V + + G+ + + + L + D + V
Sbjct: 124 AKNKGVDVSDQE--VVQAVEEMKKQGEAIDSADPNTARSIREQLTLMRVVDREVRGLIMV 181
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
A + + +E E L+ + +T +A L+ K+G+
Sbjct: 182 ADSEMKRYY---QEHQDRFAYPEEYQLSQILIKPRTPDGLSAAHGRAEALLATL-KQGEP 237
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
F D+ + + S V + +E + +V
Sbjct: 238 FEDLALRFSDGADASRGGRLGLVRQGELIPALEQALTSVDVGKITGI-VETAEGLHIVRV 296
Query: 577 TNSKV----GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ K Q K + S + Q +D +A LK++ + +
Sbjct: 297 DDKKPRQFRPFEQVKAEIQSLVFQQKTEDQYQIWMADLKNKAYIEI 342
>gi|68304918|gb|AAY89929.1| predicted survival protein surA [uncultured bacterium BAC13K9BAC]
Length = 441
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/416 (11%), Positives = 116/416 (27%), Gaps = 51/416 (12%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K +++ F+ + + V V S N + +
Sbjct: 39 VKFLIILFFLTI------SNMAHAMEDKIIAVVNDNVVLKSELNNKLTTINLEGTSR--- 89
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG------ 127
+ L ++ILD L+ + L+Q +G+ + I
Sbjct: 90 ------LEAAKLKREILDQLIEESLLEQAANRLGIYISDIDLQNRIKLIAQDKNLTVLQL 143
Query: 128 ----KDNKFSHDVFVSRLAREGINEKEYIDHY-----------------------TKMLS 160
+ + ++ L + E+ + + +
Sbjct: 144 KEAVESQNIDYLRYLKNLRKRIQIEELFRIQFTSRAYVSEEEIQSYLKTNDSLKIINNIM 203
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
+ + +D R N D I + S T+ + Y
Sbjct: 204 TVREYLIEDENNKLDITKVDILVRNIKTNGLEDTYNRYPNIKIKINNLSEIPFTKLPDIY 263
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
++N + + + +S+ EY+ + + + ++ L
Sbjct: 264 QNNLNILDQNSYTDLFKTGKGYVFLEVVSSSMYSEEYKVSHILLKTNPMENLKSLKERFY 323
Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
K +A + + + ++ ++ SLG +K+ + I S K G +
Sbjct: 324 KIKRDATKENNFSDYAQKYSLDKASAIKGGSLGWINKK-LVVPEFGR-IMSNMKIGGISE 381
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
FG+ I + + + + + + ++ K +E +L++
Sbjct: 382 PFKTQFGWHILQLEDKRIKNISN-DVARNQVVAILKERKVKVAKREWLAKLKDQAY 436
>gi|312876097|ref|ZP_07736085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
lactoaceticus 6A]
gi|311797083|gb|EFR13424.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 335
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/188 (12%), Positives = 53/188 (28%), Gaps = 4/188 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
V V+ + LI + + V + V V +K+ F ++K ++
Sbjct: 2 DKRTKIVLFSIAAVVLLIILIAVTPEIVRYVDENRAVAIVNGEKITKKEFAINYKSQINY 61
Query: 67 IS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ ++ + + +LD L+ Q + +
Sbjct: 62 YGLDKAFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQARKRNITLSSAEKKAIDQQIEQ 121
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
+ S F L G E EY D K + + + S+ ++
Sbjct: 122 YKSDSQ--SGTEFKQYLQTIGATENEYKDQVIKSQIVSKLYDEVTKNQKASDAEIESYYN 179
Query: 185 FYFENRSV 192
+ +
Sbjct: 180 SHKSDFVE 187
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 3/242 (1%)
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
Q + + L++ ++ ++ I+ D +
Sbjct: 75 DKTYEQQIKENVLDGLIIRQIELQQARKRNITLSSAEKKAIDQQIEQYKSDSQSGTEFKQ 134
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
+ I E K +SK + + +I+ + EV
Sbjct: 135 YLQTIGATENEYKDQVIKSQIVSKLYDEVTKNQKASDAEIESYYNSHKSDFVEVKASHIL 194
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYD 547
E K + +L+ K+G+NF + + T + + K +
Sbjct: 195 FKVNDSKEEAAKKKKAEEILQMIKDGQNFEKLAQKYSEDETTKQKGGDLGYFRKGQMVKE 254
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLTQMMNKDLLDSV 606
FS + + ++ + + KVT+ K + + KD+ S + + S+
Sbjct: 255 FEDAAFSLNIGEISSI-VKTSYGFHIIKVTDRKQLLLSDVKDEIKSTIESQKKDEYYQSL 313
Query: 607 IA 608
+
Sbjct: 314 LE 315
>gi|225621111|ref|YP_002722369.1| hypothetical protein BHWA1_02207 [Brachyspira hyodysenteriae WA1]
gi|225215931|gb|ACN84665.1| hypothetical protein BHWA1_02207 [Brachyspira hyodysenteriae WA1]
Length = 491
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 60/512 (11%), Positives = 154/512 (30%), Gaps = 71/512 (13%)
Query: 8 ASRTWVAKIF--------LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV---PFSSF 56
++ V K ++L + FL+ + T+ SV + + S +
Sbjct: 10 KKKSPVIKTLQWLGVSAVSILLIIYFLVV----DTRGSQKTPTIGSVNGKPIYYTSTSPY 65
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++ +++ Q++G +N+E ++ VS L+ + V
Sbjct: 66 GRAF-RQIEGYYQQLGIQINNEMY--TYIEDLAFRRAVSTMLLNDVARK-NINVSDNFVV 121
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY-TKMLSRTDVVGMFVGGMRPS 175
+ F + ++ + S + +EK I+ + + V ++ +
Sbjct: 122 EAMKS--QFIDTNGVYNQMAYESFIKNSSQSEKVKIEKDLKEDILSQTVSAELFTSVKLN 179
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + + R ++ + +N + ++A L ++F K N+ +
Sbjct: 180 DLEMQREYKKNLTKRDIEMVYINASEIVQSNQVADADLEKYFTDNKTNFAQADIS----- 234
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ +
Sbjct: 235 -------------------------------------WIITQSGGVADNLYKSLKADISL 257
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD---SIFSLAKKGDFTPVIHGSFGYVIAH 352
F + A E+ ++ LG ++ +P+ A+ + + K + I+ + Y I
Sbjct: 258 FEKTAMEKSFDTNNYKLGYLTRMQMPNEDFANKIFANNNNTKGSNLLQPIYANGYYYIVL 317
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
V++I+ + + + + E K+ E A +++ ++R
Sbjct: 318 VNDIRIPEKYTDVNKEVLRREYLNANMNTLLEAEKTKQAEVLKAAVANVNNLARLNGNGL 377
Query: 413 ID----LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
I + + E A IP F + ++ V D +++
Sbjct: 378 IKYYKPAQPFSYNQGRLNTAEGAIIPDSTTESFYMHVFSMQTNQVSDVIKLDNGVAVIRL 437
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
L + K K + + ++
Sbjct: 438 VSEEKPNMATLTTLDAATKNAVKRELSMQRMN 469
>gi|316933705|ref|YP_004108687.1| SurA domain [Rhodopseudomonas palustris DX-1]
gi|315601419|gb|ADU43954.1| SurA domain [Rhodopseudomonas palustris DX-1]
Length = 308
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/150 (12%), Positives = 40/150 (26%), Gaps = 19/150 (12%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
+ ++ L S VV V + + + +L +S
Sbjct: 9 IIGLVLCC-AAATLGLGTGPSQAQSIVVMVNGEPITNFDIEQ--RSKLNRMS-------- 57
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+++LD+L+ + + G+ + A + S
Sbjct: 58 ----HKNESRQQVLDDLIDEKVKIKEGKKYGVNPSDSDIDSSFATMAS----RMRMSTAQ 109
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+ LA +GI + +V
Sbjct: 110 MTNMLAAQGIRPDTLKSRIKAEMVWGSLVR 139
>gi|332970909|gb|EGK09885.1| peptidyl-prolyl cis-trans isomerase [Psychrobacter sp. 1501(2011)]
Length = 487
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/379 (10%), Positives = 97/379 (25%), Gaps = 63/379 (16%)
Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
S + + V + S ++ I + + L +L+
Sbjct: 71 ISTRESTNGIIAIVNDTPILKSELASAVATAQARIQASGQPAPSPQ-----RLQNDVLNG 125
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF--------VSRLARE 144
L+ ++ G+ D V + R G + + + +
Sbjct: 126 LILRELQLDMVKRAGIRPDENAVNQSLGRLAQSQGLKSLTELQQALDAKQPGRYAAVRAQ 185
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
I E+ ++R + ++ + + + + ++ +
Sbjct: 186 VIEEESLKALQQSQVARRVRITDHDVDAFLASPEAQKLQSTEYRTIHIRVPFSDDYNRIT 245
Query: 205 IADP-------------------SNAVLTQWFEKYKDNYRAPEYKRISYILF-------- 237
++ ++ VL+Q NY AP
Sbjct: 246 DSEKKAAMQIAQQAQELLKSSDDADMVLSQLSAGTAKNYIAPVQGGDMGFHPAAGLPIDI 305
Query: 238 --------DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
E +I ++ +K+ V ++ + +A
Sbjct: 306 AKQITPLEIGQVTEPQITPEGIDIVKLVDKHTNDNMIIPQWKVRHILVKTDERNSDALAE 365
Query: 290 LKKGKKFIQL-------------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
K + QL +++ G + L ++ + + + +G
Sbjct: 366 QKINDLYEQLRRDADFASLAATYSDDPGSAGRGGDLDWVAEGQMVPE--FEEMMKRTPEG 423
Query: 337 DFTPVIHGSFGYVIAHVSN 355
D++ FG+ I V
Sbjct: 424 DYSTPFKSQFGWHILKVEG 442
Score = 45.6 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 17/195 (8%), Positives = 52/195 (26%), Gaps = 4/195 (2%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
+ + + P+G + + + + + +
Sbjct: 292 DMGFHPAAGLPIDIAKQITPLEIGQVTEPQITPEGIDIVKLVDKHTNDNMIIPQWKVRHI 351
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
+ K N L + ++ +F + + + +D +
Sbjct: 352 LVKTDERNSDALAEQKINDLYEQLRRD-ADFASLAATYSDDPGSAGRGGDLDWVAEGQMV 410
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLL 603
++ E P ++ + + KV + V + ++ L Q +
Sbjct: 411 PEFEEMMKRTPEGDYSTPFKSQFGWHILKVEGVRQKDVSDTVKRNLAREALYQRLAPQAQ 470
Query: 604 DSVIAYLKSQYSVTV 618
+ + L++ V V
Sbjct: 471 EDWLQELRANAYVEV 485
>gi|282855468|ref|ZP_06264788.1| foldase protein PrsA [Pyramidobacter piscolens W5455]
gi|282586694|gb|EFB91942.1| foldase protein PrsA [Pyramidobacter piscolens W5455]
Length = 303
Score = 59.9 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/273 (10%), Positives = 68/273 (24%), Gaps = 11/273 (4%)
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
+ + + V + Q + +A + + + K+ +
Sbjct: 20 FAADQNADKKVLATVAGETITQADLDQAMSGFDPQQRAAYASPEGQAQLLDNLIDFKVFA 79
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ +A + + D K Y E
Sbjct: 80 RSGREQKLQNSPKYKEAMANLEQRLLFTLATEKILDEAGKTPATDQDAQKYY----DEHK 135
Query: 473 PARDRKLEEVLTDVKKDWKTV---KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ + K + KA L+ + F D KN A
Sbjct: 136 EIFQVPAAIRASHILIRADKNMPAKDQKAAQEKAADLIRDIKAGKTTFEDAAKNNSADGT 195
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQ 585
+ + + F+ + P++ Y V K T+S+ +
Sbjct: 196 RSRGGDLGYFSKGQMVPEFEKAAFALKKGEMTAKPVKTDFGYHVIKATDSRDASIRPFAE 255
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K+ + L + + L+++Y V +
Sbjct: 256 VKEDIKADLVRQKQVKAIQDERDALRARYGVKI 288
Score = 38.3 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 58/158 (36%), Gaps = 17/158 (10%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA------------FQSLKKGKKF 296
++ + Q Y+++KE + P ++ K + +K GK
Sbjct: 123 TDQDAQKYYDEHKEIFQVPAAIRASHILIRADKNMPAKDQKAAQEKAADLIRDIKAGKTT 182
Query: 297 IQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+ A + + LG FSK + + F+L K + FGY +
Sbjct: 183 FEDAAKNNSADGTRSRGGDLGYFSKGQMV-PEFEKAAFALKKGEMTAKPVKTDFGYHVIK 241
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
++ + + F EVK+DI + K + ++++
Sbjct: 242 ATDSRDASIRPFAEVKEDIKADLVRQKQVKAIQDERDA 279
>gi|299132839|ref|ZP_07026034.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
gi|298592976|gb|EFI53176.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Afipia sp. 1NLS2]
Length = 298
Score = 59.5 bits (141), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 44/118 (37%), Gaps = 2/118 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
++A +++ E K+G +F ++ K ++ + + + F+
Sbjct: 159 EAEAKEIIAEL-KKGADFAELAKKKSKDPGASDGGDLGYFTKDQMVPEFSAAAFALEPGK 217
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+++ + V KV + + ++ L + + +A L+S +
Sbjct: 218 I-SEPVKSQFGWHVIKVEDKRARKAPPFEQVKPQLEAFVIRKAQAEYVAKLRSDAKIE 274
Score = 38.7 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 9/106 (8%), Positives = 29/106 (27%), Gaps = 10/106 (9%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + V L + + ++ + + V ++ S +
Sbjct: 6 RTTSAVRLGLLSTAALCMAMTLMAAQPLRADDNPVLAKVNGSEIRQSDVTAA-------- 57
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
+ IG + + ++ L+ + + ED +
Sbjct: 58 EKDIGPSL--AQLDPASRQASVVQLLIDLKLVAKAAEDKKIADTPD 101
>gi|255066985|ref|ZP_05318840.1| SurA/PPIASE domain protein [Neisseria sicca ATCC 29256]
gi|255048810|gb|EET44274.1| SurA/PPIASE domain protein [Neisseria sicca ATCC 29256]
Length = 331
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 10/127 (7%), Positives = 41/127 (32%), Gaps = 7/127 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + ++ + + + G ++ + L +++L LV+ +
Sbjct: 54 SDGIAAIADNEVITQRQLAHAIAEARQHLPK--GTQISEDE-----LRQQVLAQLVNQSL 106
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + IA++P + ++ + + + + +
Sbjct: 107 IIQAGKRRNIQATDAEIDAVIAQTPSLKNPSAQTRREIADTIIMEKVRQQAVMQNSRVSD 166
Query: 159 LSRTDVV 165
+
Sbjct: 167 AEVNSFI 173
>gi|121602142|ref|YP_988681.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Bartonella bacilliformis KC583]
gi|120614319|gb|ABM44920.1| PPIC-type PPIASE domain protein [Bartonella bacilliformis KC583]
Length = 315
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 66/197 (33%), Gaps = 2/197 (1%)
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
+ +V A ++ + + D ++ L + + + + + L +
Sbjct: 90 RAYLDMQVLAKAAIQENIHKTEAYDKRMAVMRDNILQQLYFKQMVVDKITDGDLKILYDK 149
Query: 483 LTDVKKDWKTVKTAEEV--SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
VK + + K Q +++ K+G+NF +I K +
Sbjct: 150 EVAALPKEDEVKARHILVKTKKEAQAIIKRLKKGENFEEIAKKDSTDGSAAVGGDLGYFS 209
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
FS V P+E+ + + KV + ++ E D L + K
Sbjct: 210 YGQMVKPFEDAAFSLKVGEYTKNPVESPFGWHIIKVEDRRLKQPPEFDDAKEVLRAQIIK 269
Query: 601 DLLDSVIAYLKSQYSVT 617
D +IA L+S+ V
Sbjct: 270 DRYQQLIADLRSKIDVK 286
>gi|258592100|emb|CBE68405.1| DSBA oxidoreductase precursor [NC10 bacterium 'Dutch sediment']
Length = 355
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/216 (9%), Positives = 50/216 (23%), Gaps = 31/216 (14%)
Query: 19 VVLFVPFLIWGLSDALFSVSG--------SSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ + L+W + + G S + + + +L + +
Sbjct: 14 IAIGAALLLWTVLWQQSAFGGEPTAKPVQSKAAAKIDDYVITLDEIEKALAPQLAKLEDQ 73
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH---GRVWGEI-----ARS 122
L + LD L+ L + G+ + V +I A
Sbjct: 74 -----------KFQLLESKLDELIEKRLLAVEAKRRGITVEDLLKAEVTSKIPEVSDAEV 122
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
F ++ A ++Y+ + + + L +
Sbjct: 123 TAFITQN----RARLQGDEAGLRPKVRDYLSDQKMEEKQRIYLAGLRQHAKVERFLEEPE 178
Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + I + S+
Sbjct: 179 PTRIAVSAEGAFAQGPKDAPITIVEFSDFQCPYCSR 214
>gi|299136387|ref|ZP_07029570.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
MP5ACTX8]
gi|298600902|gb|EFI57057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
MP5ACTX8]
Length = 635
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/171 (11%), Positives = 55/171 (32%), Gaps = 10/171 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V Q + S ++ S +Q L Q+ + E + +L +++ L
Sbjct: 77 EDVIARVNDQIITRSEYLRSEQQLLQEAQQQSASPADFE-----SRRRDLLRDMIDEQLL 131
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+++G+ I +++ S + +++G++ +++
Sbjct: 132 LSKGKELGIT-GDAE---TIRELDEIRKRNHLDSMEALEKAASQQGVSFEDFKQGIRNNA 187
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
R VV V + + + + + + + P N
Sbjct: 188 IRQQVVQEEV-SRHLNMTHAQEDAYYAAHGKDFEVPEQIHLSEILVTTPDN 237
>gi|217076606|ref|YP_002334322.1| basic membrane protein, putative [Thermosipho africanus TCF52B]
gi|217036459|gb|ACJ74981.1| basic membrane protein, putative [Thermosipho africanus TCF52B]
Length = 333
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/290 (10%), Positives = 83/290 (28%), Gaps = 8/290 (2%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQE-----LGMISQKIGFVVNSERA---RSVGLDKKIL 90
+STV V + + + + + + Q V+++ + + +L
Sbjct: 23 ATSTVAVVNGEAITLEQLNRAADVQKLMIGISQVDQTFFSVLSNTEEGVKVILRYKRVVL 82
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
D+LV+ + QF + G V + + + F L + E
Sbjct: 83 DDLVNKLLIVQFAQKYGARLSEEEVRNVVDKQISDYLDQQGIDEKTFDMYLQYANMGTLE 142
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ ++ + + + + + + + +D ++ ++ N
Sbjct: 143 DFKEKMYFETLVNLSLERLFNVVTKDATVSDEELMDYYQKHIDEYSTPTQYTLSLIAFDN 202
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ + + + Y + + + + Y KN +
Sbjct: 203 EKVANAVKTKIVSGETFDSIASEYGISQFKYENIAEDTTFPGKLWNYIKNAPQGALLGPI 262
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
V++ + + E QS K + +++ +F
Sbjct: 263 DVDEKYYIFKVENVVPMQSKKFDEVREEISNMILSEKKKNMWANFIDSEF 312
>gi|213026808|ref|ZP_03341255.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 257
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/257 (10%), Positives = 73/257 (28%), Gaps = 7/257 (2%)
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
+ + F + VS +++ + E+++ +
Sbjct: 1 YYDQNKVRFMTPEQFRVSYIKLDAATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQT 60
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
+ +D +++ E ++ G ++ + +
Sbjct: 61 KTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNAGLKEKG 120
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ V ++ ++ + PA+ + L EV D+ K K + + ++ S
Sbjct: 121 QISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVSDAAS 180
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-------SGPVEMVKCFP 564
+ ++ + G + T +R + +F +G
Sbjct: 181 NDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPGPNSDII 240
Query: 565 IENGLSYVVFKVTNSKV 581
+G V +V+ K
Sbjct: 241 TVDGDRAFVVRVSEHKP 257
>gi|209965938|ref|YP_002298853.1| peptidyl-prolyl cis-trans isomerase family protein, putative
[Rhodospirillum centenum SW]
gi|209959404|gb|ACJ00041.1| peptidyl-prolyl cis-trans isomerase family protein, putative
[Rhodospirillum centenum SW]
Length = 315
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 6/136 (4%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NEN 541
+V+ V+T EE + Q+ K G +F + + Q +
Sbjct: 155 QDEVRARHILVQTKEEAEALIKQI-----KGGADFNKLAADQKIDTAAAQQQGDLGYFTK 209
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
F+ V P+E + V KV + + ++ L Q++ +D
Sbjct: 210 DQMVEPFAKAAFAMKPGDVSQTPVETQFGWHVIKVEDKRKQTPPTYEEAAPELRQVVAQD 269
Query: 602 LLDSVIAYLKSQYSVT 617
+ V+ L+ Q V
Sbjct: 270 IAGDVVEGLRKQAKVE 285
>gi|49475012|ref|YP_033053.1| peptidyl-prolyl cis-trans isomerase [Bartonella henselae str.
Houston-1]
gi|49237817|emb|CAF27012.1| Peptidyl-prolyl cis-trans isomerase [Bartonella henselae str.
Houston-1]
Length = 317
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 5/135 (3%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+VK VKT +E + +++ +G++F +I K + +
Sbjct: 157 EDEVKARHILVKTKKEA-----EAIIKRLNKGESFEEIAKKNSTDGSAAVGGDLGYFSHG 211
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
F V P+E+ + + K+ + +V D L + K+
Sbjct: 212 QMVKPFEDAAFGLKVGEYTKKPVESPFGWHIIKIEDRRVKQPPVFDDVKEMLRTQLIKER 271
Query: 603 LDSVIAYLKSQYSVT 617
+IA L+ + V
Sbjct: 272 YQKLIADLRKKIDVK 286
>gi|254229741|ref|ZP_04923149.1| ppic-type ppiase domain protein [Vibrio sp. Ex25]
gi|262392437|ref|YP_003284291.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. Ex25]
gi|151937708|gb|EDN56558.1| ppic-type ppiase domain protein [Vibrio sp. Ex25]
gi|262336031|gb|ACY49826.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio sp. Ex25]
Length = 427
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + K L +++ G + S L +++++ L+
Sbjct: 25 DKVAVIVNDGVILQSDIETAMK-TLQANARQSGKSLPSASV----LKEQVVEKLIIDTLQ 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG+ D R+ IA ++N+ S + + + EG++ E+ + K +
Sbjct: 80 GQEADRIGVRIDDNRLNQAIAEI----ARNNEQSVEQLAASVESEGLSYPEFREQIRKEI 135
Score = 39.5 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 29/275 (10%), Positives = 73/275 (26%), Gaps = 9/275 (3%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
NI P+ S E N K E+ + + +
Sbjct: 147 RRINILPAEVDSLAEQLSQETNATVQYKIGHIQLRFSDDKEKSAVEAEAKALAKKLNEGA 206
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
++ + +++ + +F + ++ P S + I +
Sbjct: 207 DFTEMAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKI 266
Query: 472 IPARDRKLEEVLT----DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + V + + + E + N+ V F +
Sbjct: 267 EDVKGLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRRIKAGEATFAQLATQYSQD 326
Query: 528 LLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGP 583
+ Q + + + QV + PV + P + + + +V +
Sbjct: 327 PGSAAQDGELGYQTPDLYVPEFKHQVETLPVGSI-SEPFKTVHGWHIVEVLDRRQVDRTD 385
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K+K L + + + L++ V +
Sbjct: 386 SAMKNKAYRILFNRKFNEEAGAWMQELRASAFVEI 420
>gi|320162050|ref|YP_004175275.1| hypothetical protein ANT_26490 [Anaerolinea thermophila UNI-1]
gi|319995904|dbj|BAJ64675.1| hypothetical protein ANT_26490 [Anaerolinea thermophila UNI-1]
Length = 303
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 44/137 (32%), Gaps = 16/137 (11%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V+ V + VP + + S K +L ++G E + +LD+L++ L
Sbjct: 54 QPLVLVVNGEGVPLAEYEASLK-QLQEAQAQMGLTSTPEEQ-----RRMVLDDLIAATLL 107
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q G D + +IA G + + + Y + +
Sbjct: 108 AQAAFKEGFTLDDAALEEQIAALAEQRGGMSAL----------QNWMTRMGYDEVSFRSA 157
Query: 160 SRTDVVGMFVGGMRPSN 176
R + ++ +
Sbjct: 158 LRRSLAAAWMRDTIAAQ 174
>gi|297181079|gb|ADI17278.1| parvulin-like peptidyl-prolyl isomerase [uncultured alpha
proteobacterium HF0070_17D04]
Length = 355
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 45/136 (33%), Gaps = 5/136 (3%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
V V+T EE + +QL+ +G +F ++ + +
Sbjct: 207 RETVTASHILVETEEEAKAIIDQLM-----DGADFAELAREKSTGPSGPGGGSLGSFGRG 261
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
+ F PV P++ + V +V+ + D+ + +++
Sbjct: 262 QMVPAFEAAAFGMPVGSFSDNPVQTQFGWHVIQVSEKGIQEAPALDQMRDQIAANLSRQS 321
Query: 603 LDSVIAYLKSQYSVTV 618
++ L+ ++ +
Sbjct: 322 FARIVETLRVGTTIEI 337
>gi|225873725|ref|YP_002755184.1| peptidyl-prolyl cis-trans isomerase, PpiC type [Acidobacterium
capsulatum ATCC 51196]
gi|225793223|gb|ACO33313.1| peptidyl-prolyl cis-trans isomerase, PpiC type [Acidobacterium
capsulatum ATCC 51196]
Length = 372
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/279 (10%), Positives = 76/279 (27%), Gaps = 15/279 (5%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + +V + + S ++ +G + + + IL
Sbjct: 41 SGCNRAHKADVLATVNGKPIMKSQVDLLYEANVGK------QPEKPTKVQGDIVRLNILS 94
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
L++ L Q + L A + V + F+ D F +LA++ +
Sbjct: 95 RLINEEILMQRAAKMNLVASNEDVESRLNEIKA------PFTPDEFQKQLAQQHLTLDAL 148
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
L+ + + + D Y+ ++ + + A +N
Sbjct: 149 KQQIRNQLTEQKLFNKEINSKI---DVTDDQITAYYNAHKAEFNLPQPQFHLAQILVTNI 205
Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
N +A + + ++ K + E + ++
Sbjct: 206 PENAKNSGNLQNSKAMNDAEAKRKIQMLDDRLKNGDDFGTLASNFSENPQNSSNGGDMGF 265
Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
+ Q + + A L G+ L + +
Sbjct: 266 ISQQELQSDPDVWGAVSKLSPGEITPVLPVYATQDHKKV 304
>gi|27375316|ref|NP_766845.1| hypothetical protein blr0205 [Bradyrhizobium japonicum USDA 110]
gi|27348452|dbj|BAC45470.1| blr0205 [Bradyrhizobium japonicum USDA 110]
Length = 323
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 54/147 (36%), Gaps = 4/147 (2%)
Query: 473 PARDRKLEEVLTDV--KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
A + EE + +++ + E +A + E K G +F ++ K +
Sbjct: 146 DAMKKVYEEASKQITGEQEVRARHILVETEDEAKAVKAELDK-GADFAELAKKKSKDPGS 204
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ + + + + F+ + P+++ + + KV + + ++
Sbjct: 205 ADGGDLGFFTKEQMVPEFSAVAFALEPGKI-SDPVKSQFGWHIIKVEEKRNRKAPDFEQV 263
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q + + +A L+++ V
Sbjct: 264 KAQIEQYVTRKAQADYVAKLRTEAKVE 290
Score = 38.7 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 10/101 (9%), Positives = 30/101 (29%), Gaps = 15/101 (14%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+A + L + + + + V ++ S + +++G
Sbjct: 32 LATALVGCLALALI-----AGPGRAADDPVLAKVNGAEIKKSDVAMA--------EEELG 78
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
+ + D+ +L L+ + + ED +
Sbjct: 79 PSL--AQMDPATKDENVLSFLIDMKIVSKAAEDKKVADSEE 117
>gi|206889870|ref|YP_002249039.1| foldase protein PrsA 1, putative [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206741808|gb|ACI20865.1| foldase protein PrsA 1, putative [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 292
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 6/166 (3%)
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
Q+ E + + + + + + + +A ++ K G+ F I K L
Sbjct: 114 QVTEQDAKEYYEKNKDMFIKPVEVRLSQIVVKNEDEAKKVYERIDK-GEEFSKIAKELSR 172
Query: 527 SLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
T + K + FS V G Y +FK+T+ K P+
Sbjct: 173 DEKTKASGGDIGFFKKGQLNPQIENVAFSLRKGQVSMPLTFKGELY-IFKITDVKGNPID 231
Query: 586 EKD---KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ + I L +D ++ I LK ++ V +++ +Q L+
Sbjct: 232 FEQIKGQLIEQLKAKKQQDWFNTYIDDLKKKHKVEINEKALQEILN 277
>gi|226940617|ref|YP_002795691.1| signal peptide protein [Laribacter hongkongensis HLHK9]
gi|226715544|gb|ACO74682.1| Probable signal peptide protein [Laribacter hongkongensis HLHK9]
Length = 257
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/190 (12%), Positives = 65/190 (34%), Gaps = 10/190 (5%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD--------VKK 488
Q + P ++ L + +++ + + +V + +K
Sbjct: 69 RQEAMKKGLDKSPDYRNELENLQSALLANLYVRDFMKSHPVSEADVRAEYDRMKVQMARK 128
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYD 547
+++ +A +++ + K+G F D+ + + + + +
Sbjct: 129 EYRARHILVPSQEEAAKVLEQL-KKGARFEDLARQYSIDTGSKANGGDLGFVDPAQLVPE 187
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ + P+++ + + ++T++K D + L Q + D+ I
Sbjct: 188 FSGAMTKLAKGQITQTPVKSQFGWHIIQLTDTKEADFPALDAVRAQLEQQIQGQRFDAYI 247
Query: 608 AYLKSQYSVT 617
A LK+Q V
Sbjct: 248 ARLKAQAKVQ 257
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 30/173 (17%), Positives = 66/173 (38%), Gaps = 6/173 (3%)
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ V + K +S +++AEY++ K + E ++ P+Q+
Sbjct: 83 YRNELENLQSALLANLYVRDFMKSHPVSEADVRAEYDRMKVQMARKEY-RARHILVPSQE 141
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
EA + + LKKG +F LA + + LG + + ++ LAK
Sbjct: 142 EAAKVLEQLKKGARFEDLARQYSIDTGSKANGGDLGFVDPAQLV-PEFSGAMTKLAKGQI 200
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+ FG+ I +++ K + + V+ + Q++ + + +
Sbjct: 201 TQTPVKSQFGWHIIQLTDTKEADFPALDAVRAQLEQQIQGQRFDAYIARLKAQ 253
>gi|114564239|ref|YP_751753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
frigidimarina NCIMB 400]
gi|121956468|sp|Q07YK0|SURA_SHEFN RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|114335532|gb|ABI72914.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
frigidimarina NCIMB 400]
Length = 434
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 51/156 (32%), Gaps = 12/156 (7%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI +L + ++ + V + + S N
Sbjct: 6 KIIFALLALAMSNTSMAAPM---PLDRVSVQINDGIILESEITNMVSTVKANAKA-ANQT 61
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ S+ A L ++++ L+ Q E IGL+ ++ I K+ K +
Sbjct: 62 LPSDDA----LRTQVIERLILTHLQMQMAERIGLQIGDLQLDQTIENI----AKEQKVTV 113
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ EG + +Y + + ++ ++ + V
Sbjct: 114 AQMQQTIESEGTSFSQYREQLRQEVTLGEIQRIQVQ 149
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 12/192 (6%), Positives = 59/192 (30%), Gaps = 6/192 (3%)
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDW 490
+ LF + + +++ ++ + +++EEV + +
Sbjct: 236 MNINEMPTLFAEVISNAKKGDIIGPIKSGSGFHIIKVVDTRGLQTQEVEEVKSRHILLKP 295
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGI 549
+ + + + + + +F + + + + + + +
Sbjct: 296 SPILSEDRAKAMLANFLAQVRAGDADFAKLATQYSEDPGSAAKGGELGWADPSMYVPEFT 355
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSV 606
+ S P + V ++ + + E+ ++ + + + L +
Sbjct: 356 QTLASLQEGQY-SEPFRTTHGWHVVQLESRRKTDATEQFNSNRAHQLIFRRKFNEELQNW 414
Query: 607 IAYLKSQYSVTV 618
+ ++S+ + +
Sbjct: 415 LDEMRSEAYIEI 426
>gi|16125933|ref|NP_420497.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter
crescentus CB15]
gi|13423099|gb|AAK23665.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter
crescentus CB15]
Length = 501
Score = 59.5 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/140 (9%), Positives = 36/140 (25%), Gaps = 16/140 (11%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
S V + + + + + + ++++ L +L+
Sbjct: 106 SESVAAVVNDDIISSYDLMQRMRLLMATSGMQ------PTQENLPQIEQEALRSLIDERL 159
Query: 99 LDQFIED----IGLEA--DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
Q ++ + V +I + N+ + +L +GI +
Sbjct: 160 QMQELKRVEKQQKITIISTDKEVEEQIGDI----AQSNRLQPEQLKQQLVAQGIGLDTWR 215
Query: 153 DHYTKMLSRTDVVGMFVGGM 172
S + G
Sbjct: 216 AQLRAESSWQSWIQGRYGSR 235
>gi|269925897|ref|YP_003322520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
terrenum ATCC BAA-798]
gi|269789557|gb|ACZ41698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
terrenum ATCC BAA-798]
Length = 398
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 46/134 (34%), Gaps = 21/134 (15%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL------- 64
++ + + +L V +I + S T+ VG +++ + + K ++
Sbjct: 34 IISVVAIALLIVVLIIAVPLIKQYLWEPSRTLAVVGNERIRKADYDQYVKMQVLGITDAP 93
Query: 65 --------------GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
Q++ +NS + +D LD +++ L+Q +G+
Sbjct: 94 ESLASLYQVYKTDPESFPQRVKDAINSSMFSTSDVDAYTLDQMINNLVLNQTASKLGINI 153
Query: 111 DHGRVWGEIARSPL 124
V +I
Sbjct: 154 SDQEVQAKIREIMS 167
>gi|307718834|ref|YP_003874366.1| hypothetical protein STHERM_c11500 [Spirochaeta thermophila DSM
6192]
gi|306532559|gb|ADN02093.1| hypothetical protein STHERM_c11500 [Spirochaeta thermophila DSM
6192]
Length = 501
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/199 (16%), Positives = 66/199 (33%), Gaps = 13/199 (6%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV------PFSSFINSWKQELG 65
W + I ++ V F+ G+ A V P++ F ++
Sbjct: 21 WGSIIVFAIIVVSFIFVGVPSAGVGSQTKIVYGKYAGMPVEQLPQMPYTYFQREIERLSD 80
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
I Q+ + + + + +N V + +D GL + + R
Sbjct: 81 QIRQQ-NVTAEQSQFLTYQILRTAFNNTVFHLAALKLAQDAGLHVSSKALDRAVMRE--- 136
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ +D +FS D +++ E +++ Y + + VV V G S
Sbjct: 137 YTEDGEFSEDRYLATPPAERYQIRKF---YRETILSQQVVNDLVFGSVVSEAERSFIAGM 193
Query: 186 YFENRSVDYIVLNNRHVPA 204
+ R + Y+V + P
Sbjct: 194 NYPQRKIRYLVYDFDEYPE 212
Score = 44.8 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 28/295 (9%), Positives = 81/295 (27%), Gaps = 14/295 (4%)
Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
F I + + S +++Q ++ N + A + ++
Sbjct: 61 EQLPQMPYTYFQREIERLSDQIRQQNVTAEQSQFLTYQILRTAFNNTVFHLAALKLAQDA 120
Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
+ M E + + A + K +Q++ +
Sbjct: 121 GLHVSSKALDRAVMREYTEDGEFSEDRYLATPPAERYQIRKFYRETILSQQVVNDLVFGS 180
Query: 448 DPLSKDHTVALPDGS------YMWVQIKESIPARDRKLEEVLTDVKKDWKTVK-TAEEVS 500
+ + Y+ E + E D+ + + + T
Sbjct: 181 VVSEAERSFIAGMNYPQRKIRYLVYDFDEYPETEAKAYGEAHPDLFRTMELSRITITSSQ 240
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ----INRMDNENKFFGYDGISQVFSGP 556
+A +L KE + F ++ + + + R + D ++ +FS
Sbjct: 241 IEAEKLYQTLLKEPERFEELARASSRDPNASQGGKMGVVRYADLKDLLSEDDLATIFSMK 300
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ---MMNKDLLDSVIA 608
+ ++V+ + P + + Y+ +++++ +
Sbjct: 301 KGDILGVFTTLSGAWVIVRCDKEAEAPDLTRKDTLDYIKNYLLSYERNIVEEYFS 355
>gi|322418543|ref|YP_004197766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
gi|320124930|gb|ADW12490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
Length = 335
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/358 (12%), Positives = 104/358 (29%), Gaps = 74/358 (20%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + + + L + + + + LD L L
Sbjct: 43 KDAVQLVNGVAITRAEIERATRVLLSQSGA--PQQLPPDAMQKAS--QAALDQLTMAELL 98
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q I ++ +V +IA S + + D F L G+ E + K +
Sbjct: 99 YQEAAKIEIKDLDQQVEKKIAESKALYP-----NPDAFEEALKGSGLTVAEMTRNARKSI 153
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + ++A +++++
Sbjct: 154 MINTFIEKRFAS---------------------------------KVEVTDAEAQKFYQE 180
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
++ Y + + + + +
Sbjct: 181 NQEKYFTRPENARASHI---------------------------LVKVDDKLTAEQKQQA 213
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKG 336
+++A+ + +K G+ F +A+ + S LG+F + + + K G
Sbjct: 214 KEKAEALLKRVKGGEDFAAVAKTESGCPSATVGGDLGTFGRGQMVPP--FEKAVFAMKPG 271
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ + V+ FG+ I + + VS++E K I ++ + ++V L+
Sbjct: 272 EISSVVESQFGFHIIKLVEKHEAGKVSYEEAKTKIFEYLKAERVRKEVTSFVDELKSK 329
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 69/250 (27%), Gaps = 12/250 (4%)
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
++ +A++ +D + E + + ++ + A ++
Sbjct: 93 TMAELLYQEAAKIEIKDLDQQVEKKIAESKALYPNPDAFEEALKGSGLTVAEMTRNARKS 152
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
I + F + Y + + +L V
Sbjct: 153 IMINTFIEKRFASKVEVTDAEAQKFYQENQEKYF-------TRPENARASHILVKVDDKL 205
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+ + KA L+ + K G++F + K T +
Sbjct: 206 TAEQKQQ-AKEKAEALL-KRVKGGEDFAAVAKTESGCPSATVGGDLGTFGRGQMVPPFEK 263
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVI 607
VF+ + +++ V + G + K K YL + + S +
Sbjct: 264 AVFAMKPGEISSVVESQFGFHIIKLVEKHEAGKVSYEEAKTKIFEYLKAERVRKEVTSFV 323
Query: 608 AYLKSQYSVT 617
LKS+ +T
Sbjct: 324 DELKSKAKIT 333
>gi|30249389|ref|NP_841459.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
europaea ATCC 19718]
gi|30138752|emb|CAD85329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
europaea ATCC 19718]
Length = 264
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/143 (11%), Positives = 47/143 (32%), Gaps = 3/143 (2%)
Query: 477 RKLEEVLTDV-KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
++ E V + K++K E +A LV K+G F + + +
Sbjct: 123 KEYESVKAQMGDKEYKARHILVETEQEAKDLVAAL-KKGSAFDKLAGERSIDTGSKSNGG 181
Query: 536 RMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
+ + + + P+++ + V ++ + + ++ +
Sbjct: 182 ELGWSSAAVYVKPFADALIRLKKGETTSQPVQSPFGWHVIRLDDVRTAVPPSFEEVKQNM 241
Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617
Q + + +V+ L+ V
Sbjct: 242 QQRVLQRKFAAVVESLRKNAKVE 264
Score = 44.8 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 11/83 (13%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
+ TV V +P S K + S + + +NL++
Sbjct: 23 NAQSGGTVAKVNGVAIPQSRLDLVVKAATAQ-----------GQPDSAEVRNALRENLIT 71
Query: 96 GATLDQFIEDIGLEADHGRVWGE 118
L Q GL+ V
Sbjct: 72 EEILAQEAIKKGLDRSPEVVTQI 94
>gi|329890123|ref|ZP_08268466.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568]
gi|328845424|gb|EGF94988.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568]
Length = 457
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 38/128 (29%), Gaps = 11/128 (8%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ +V + + + M + + ++ L++L+
Sbjct: 67 SDGIIATVNDRIITGFDLRQRMLVLMAMTQVQ------PTEENIGAIQQQALNDLIDQHL 120
Query: 99 LDQFIEDIG-LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ L+ + EIA G +++ L + GI+ + +
Sbjct: 121 QAAELAKFEQLKIGDAEIDQEIADMARQAGTT----PASYINFLEQGGISIPAFREQMRT 176
Query: 158 MLSRTDVV 165
+ ++V
Sbjct: 177 EIGWRELV 184
Score = 37.1 bits (83), Expect = 9.3, Method: Composition-based stats.
Identities = 15/202 (7%), Positives = 48/202 (23%), Gaps = 8/202 (3%)
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+ + L V + + + + G Y+ + A ++
Sbjct: 262 SAARGGDAGWVVQGTVQPALQSVMDTLEAGQLSNPIPVDGGVYILYMRDKRSGASTSMVK 321
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
V+ + +++ + + G + +++
Sbjct: 322 MKQVMVELPENADEAQVAAATQRLEALRGQLTCDNILTRARSEPGL-----LGADLGESD 376
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLTQMM 598
S V V + L + V + ++ + + L
Sbjct: 377 VADLLPQFQQVARSAEVGSVSTA-VRTPLGVHLLAVCDRRLGGPDAPSAQQVEARLQNQN 435
Query: 599 NKDLLDSVIAYLKSQYSVTVHD 620
L + L++ + +
Sbjct: 436 YAMLGRRYLRDLRADALIEIKQ 457
>gi|315187212|gb|EFU20969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
thermophila DSM 6578]
Length = 501
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/199 (16%), Positives = 63/199 (31%), Gaps = 13/199 (6%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV------PFSSFINSWKQELG 65
W + I ++ V F+ G+ A V P++ F ++
Sbjct: 21 WGSIIVFAIIVVSFIFVGVPSAGVGSQTKIVYGKYAGMPVEQLPQMPYTYFQREIERLSD 80
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
I Q+ + + + + +N V + +D GL + + R
Sbjct: 81 QIRQQ-NVTAEQSQFLTYQILRTAFNNTVFHLAALKLAQDAGLHVSSKALDRAVMRE--- 136
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ +D +FS D + LA + Y + + VV V G S
Sbjct: 137 YTEDGEFSEDRY---LATPPAERHQIRKFYRETILSQQVVNDLVFGNVVSEAERSFIAEM 193
Query: 186 YFENRSVDYIVLNNRHVPA 204
+ R + Y+V + P
Sbjct: 194 NYPQRKIRYLVYDFDEYPE 212
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 29/295 (9%), Positives = 81/295 (27%), Gaps = 14/295 (4%)
Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
F I + + S +++Q ++ N + A + ++
Sbjct: 61 EQLPQMPYTYFQREIERLSDQIRQQNVTAEQSQFLTYQILRTAFNNTVFHLAALKLAQDA 120
Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
+ M E + + A + K +Q++ + +
Sbjct: 121 GLHVSSKALDRAVMREYTEDGEFSEDRYLATPPAERHQIRKFYRETILSQQVVNDLVFGN 180
Query: 448 DPLSKDHTVALPDGS------YMWVQIKESIPARDRKLEEVLTDVKKDWKTVK-TAEEVS 500
+ + Y+ E + E D+ K + + T
Sbjct: 181 VVSEAERSFIAEMNYPQRKIRYLVYDFDEYPETEAKAYGEAHPDLFKTMELSRITVTSSQ 240
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ----INRMDNENKFFGYDGISQVFSGP 556
+A +L KE + F ++ + + + R + D + +FS
Sbjct: 241 IEAEKLYQTLLKEPERFEELARASSRDPNASQGGKMGVVRYADLKDLLSEDDLVTIFSMK 300
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ---MMNKDLLDSVIA 608
+ ++V+ + P + + Y+ +++++ +
Sbjct: 301 KGDILGVFTTLSGAWVIVRCDREAEAPDLTRKDTLDYIKNYLLSYERNIVEEYFS 355
>gi|78222035|ref|YP_383782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
metallireducens GS-15]
gi|78193290|gb|ABB31057.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
metallireducens GS-15]
Length = 339
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/353 (14%), Positives = 105/353 (29%), Gaps = 68/353 (19%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
S ++ V V + + + K L +Q +N E ++ +++ L+ L++
Sbjct: 43 SATTAVARVNGVDITRAELERAKKIILSR-NQMASAAMNDEMSKK--VEEAALNQLIAKE 99
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
L Q + ++ ++ ++A S + L + EKE +
Sbjct: 100 LLFQAGKKQEIKDLDKKIQEKVAEHKARFK-----SQADYEKALKEMDMTEKEVETFTRE 154
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ +++ + A ++ +++
Sbjct: 155 DMVIGNLIETKI---------------------------------VANTKITDDEAKKFY 181
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
KD +R E R S+IL +K E
Sbjct: 182 NDNKDKFRREEAVRASHILVSADQKASPEEKKKA-------------------------K 216
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
+ + + + + S LG F K + + K G+
Sbjct: 217 EKAEALLKQLKGGADFAELAKKESSCPSSAQGGDLGFFGKGQMVPE--FEKTAFNLKPGE 274
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+ V+ FGY I ++ K + TV F+E K+ I + K + E
Sbjct: 275 VSDVVETQFGYHIIKLAEKKDAETVPFEEAKERIVQFLTQQKVQAGIGEYVDE 327
Score = 53.7 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 31/267 (11%), Positives = 80/267 (29%), Gaps = 25/267 (9%)
Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
R AS + ++ + E AL + + + ++ +D ++ + A
Sbjct: 71 RNQMASAAMNDEMSKKVEEAALNQLIAKELLFQAGKKQEIKDLDKKIQEKVAEHKARFKS 130
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ + D + T D + + + +E + +
Sbjct: 131 QADYEKALKEMDMTEKEVETFTREDMVIGNLIETKIVANTKITDDEAKKFYNDNKDKFRR 190
Query: 496 AEEVSS--------------------KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
E V + + + +L+ K G +F ++ K + + +
Sbjct: 191 EEAVRASHILVSADQKASPEEKKKAKEKAEALLKQLKGGADFAELAKKESSCPSSAQGGD 250
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFI 591
+ F+ V +E Y + K+ K + K++ +
Sbjct: 251 LGFFGKGQMVPEFEKTAFNLKPGEV-SDVVETQFGYHIIKLAEKKDAETVPFEEAKERIV 309
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+LTQ + + + L+ + V +
Sbjct: 310 QFLTQQKVQAGIGEYVDELRKKGKVEI 336
>gi|256823427|ref|YP_003147390.1| SurA domain-containing protein [Kangiella koreensis DSM 16069]
gi|256796966|gb|ACV27622.1| SurA domain protein [Kangiella koreensis DSM 16069]
Length = 427
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/500 (9%), Positives = 127/500 (25%), Gaps = 78/500 (15%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ F + + +L + + V + S Q I + G + E
Sbjct: 6 ALIGFTLCLAAFSLQAEVIDKVIAHVDEDVILQSELDRKVIQAKQQIRSR-GGQLPPEDV 64
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L K++L+ L+ + Q G++ + A+ + + + D F
Sbjct: 65 ----LKKELLEQLIIQSLQYQMAVRSGMQLQPAELQQYAAQV----AQSSGMTLDEFRLS 116
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
LA++GI + ++D K + + FV
Sbjct: 117 LAQQGIAYELFLDDLRKEILTGQLRDAFVS------------------------------ 146
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
S+ + + + + I E+ + + ++
Sbjct: 147 ---RRIKVSDKEIESLIQSMNAQNQVEYHLGHILIAVQEDADEETQKQAKQNALKVMKEL 203
Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
K + + ++ + G ++ +
Sbjct: 204 K---------------------------AGADFAETAKVVSSSPDAAEGGDFGWRTESNM 236
Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
P +L ++ + GD + I G+ I + + + Q+
Sbjct: 237 P--TLFANVVNFLDTGDISQPIRSPSGFHILKIKDKRGEQQHLVQQTNARHILIRP---- 290
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
+ + + ++ + + + + K + + +
Sbjct: 291 -DAITTESNAKQQLQNIRQRVLAGEADFGDEAKKHSDDPGSAKLGGNLGWNNLGVYDPVF 349
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
+ D G ++ + D+ + + K EEV
Sbjct: 350 EQTLTDLDVNEISEPFQSNFGWHIVQLLG--RRTDDQTDAMKRQQAMRILQQRKFGEEVE 407
Query: 501 SKANQLVLEYSKEGKNFRDI 520
+ +L E + D
Sbjct: 408 NWIRELRDEAYVKKIVEEDA 427
Score = 40.2 bits (91), Expect = 0.96, Method: Composition-based stats.
Identities = 32/350 (9%), Positives = 94/350 (26%), Gaps = 5/350 (1%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
EQL+ + + ++ +Q Q S ++L F +
Sbjct: 71 EQLIIQSLQYQMAVRSGMQLQPAELQQYAAQVAQSSGMTLDEFRLSLAQQGIAYELFLDD 130
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
+K T + +F VS+ + + + + + + + D + +
Sbjct: 131 LRKEILTGQLRDAFVSRRIKVSDKEIESLIQSMNAQNQVEYHLGHILIAVQEDADEETQK 190
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL--LFRVFGKDDPL 450
+ + + + + +V + +G + V D
Sbjct: 191 QAKQNALKVMKELKAGADFAETAKVVSSSPDAAEGGDFGWRTESNMPTLFANVVNFLDTG 250
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
+ P G ++ + + + + + T + +
Sbjct: 251 DISQPIRSPSGFHILKIKDKRGEQQHLVQQTNARHILIRPDAITTESNAKQQLQNIRQRV 310
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
+F D K + + N Q + P ++
Sbjct: 311 LAGEADFGDEAKKHSDDPGSAKLGGNLGWNNLGVYDPVFEQTLTDLDVNEISEPFQSNFG 370
Query: 571 YVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + ++ + + + + + L Q + +++ I L+ + V
Sbjct: 371 WHIVQLLGRRTDDQTDAMKRQQAMRILQQRKFGEEVENWIRELRDEAYVK 420
>gi|226355582|ref|YP_002785322.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus deserti
VCD115]
gi|226317572|gb|ACO45568.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
[Deinococcus deserti VCD115]
Length = 626
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 45/163 (27%), Gaps = 13/163 (7%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
E+ L + + +KA +L+ + + G +F + K
Sbjct: 164 TEAEAKLYYDLNPEKFQSEARIIGRQIVVAKEAKAKELLAQ-VRGGADFAAVAKANSTEF 222
Query: 529 LT-------TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ + F+ + + +G + + KV
Sbjct: 223 ADRGGALGPVENGKPRPVAQVALPAEVGAAAFALTKGGI-TDVVASGDKFYIVKVEQYLA 281
Query: 582 GP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ K I+ +T+ L+ + L+ + V D
Sbjct: 282 PATKPFAEAKADAITAVTEQKKNAALEEWVEGLEKDVKIEVKD 324
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 5/113 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSW--KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ V +VG Q V S I+ ++ G + Q++ + + + L ++ L+S
Sbjct: 331 NPVVATVGGQNVRHSDVISQVVGNEQFGQLLQQVPGD-QAAQLVNGMLKPQVTQQLISSY 389
Query: 98 TLDQFIEDIGLEA--DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
Q + L + IA + K F ++ + +
Sbjct: 390 AAPQIARSLKLPVTGTRQEMAAAIAAYGSRNVKVTDADVQAFYTQNKAQFQSP 442
>gi|312128222|ref|YP_003993096.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
hydrothermalis 108]
gi|311778241|gb|ADQ07727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
hydrothermalis 108]
Length = 335
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/188 (11%), Positives = 53/188 (28%), Gaps = 4/188 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
V V+ + LI + + V + V V +K+ F +++ ++
Sbjct: 2 DKRTKIVLFSIAAVVLLIILIAVTPEIVRYVDENRAVAIVNGEKITKKEFAINYRSQINY 61
Query: 67 IS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ ++ + + +L+ L+ Q + +
Sbjct: 62 YGLDKAFLSQKVGDKTYEQQIKENVLNGLIIRQIELQQARKRNITLTAAEKKAIDQQIQQ 121
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
+ S F L G E EY D K + + + ++ ++
Sbjct: 122 YKSDSQ--SGAEFKQYLQTIGATENEYKDQVIKSQIVSKLYDEVTKNQKATDAEIESYYN 179
Query: 185 FYFENRSV 192
+ +
Sbjct: 180 SHKSDFVE 187
Score = 41.0 bits (93), Expect = 0.60, Method: Composition-based stats.
Identities = 36/271 (13%), Positives = 80/271 (29%), Gaps = 5/271 (1%)
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
I + +F K + K + +++E A ++
Sbjct: 46 ITKKEFAINYRSQINYYGLDKAFLSQKVGDKTYEQQIKENVLNGLIIRQIELQQARKRNI 105
Query: 402 DEISRREKIVSIDLPL--VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ +K + + D + + I E K +SK +
Sbjct: 106 TLTAAEKKAIDQQIQQYKSDSQSGAEFKQYLQTIGATENEYKDQVIKSQIVSKLYDEVTK 165
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ +I+ + EV E K + +L+ K+G+NF
Sbjct: 166 NQKATDAEIESYYNSHKSDFVEVKASHILFKVNDSKEEATKKKKAEEILQMIKDGQNFEK 225
Query: 520 IGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+ + T + + K + FS + + ++ + + KVT+
Sbjct: 226 LAQKYSEDETTKQKGGDLGYFRKGQMVKEFEDAAFSLNIGEISSI-VKTSYGFHIIKVTD 284
Query: 579 SKVGPVQE-KDKFISYLTQMMNKDLLDSVIA 608
K + E KD+ S + + S++
Sbjct: 285 RKQLSLNEVKDEIKSTIESQKKDEYYQSLLE 315
>gi|298370562|ref|ZP_06981877.1| SurA/PPIASE domain protein [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281172|gb|EFI22662.1| SurA/PPIASE domain protein [Neisseria sp. oral taxon 014 str.
F0314]
Length = 304
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 34/93 (36%), Gaps = 7/93 (7%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V + + + + G ++++ L +++L LV+ +
Sbjct: 26 SDGIAAVVDNDVITQREVAQAVAAARSRLPK--GSQISNDE-----LRQQVLSQLVNQSL 78
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ Q + ++A + +A++P K NK
Sbjct: 79 IIQAGKRKKIQASEAEIDAVLAQNPTQAKKANK 111
>gi|260467140|ref|ZP_05813318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium
opportunistum WSM2075]
gi|259029064|gb|EEW30362.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium
opportunistum WSM2075]
Length = 309
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 56/166 (33%), Gaps = 2/166 (1%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ ++ ++ E T + + +A ++ + G +F+ +
Sbjct: 139 VVAKVTDAEVRARYDQEIANTPPVNEVHARHILVKTKEEAEAIIKQLD-GGADFQKLANE 197
Query: 524 LGASLL-TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
+ T+ + + F+ V P+++ + V K+ + +
Sbjct: 198 HTSDPSGKTSGGDLGWFGPGQMVPEFDKAAFALEVGKYTEQPVQSQFGWHVIKLEDKRTK 257
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
D Q + +D +++ L++ V + D +++ +D
Sbjct: 258 QPPAFDDVKDQAKQAVIRDKYFALVKSLRAGAKVEIPDVKLKQAVD 303
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 5/144 (3%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
++ E++A Y++ ++ ++EA+ + L G F +LA E S
Sbjct: 144 TDAEVRARYDQEIANTPPVNEVHARHILVKTKEEAEAIIKQLDGGADFQKLANEHTSDPS 203
Query: 309 D----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
LG F + + F+L + FG+ + + + + +F
Sbjct: 204 GKTSGGDLGWFGPGQMV-PEFDKAAFALEVGKYTEQPVQSQFGWHVIKLEDKRTKQPPAF 262
Query: 365 QEVKKDIANQMRITKASEKVKEDY 388
+VK + K VK
Sbjct: 263 DDVKDQAKQAVIRDKYFALVKSLR 286
>gi|299142782|ref|ZP_07035911.1| ppic-type ppiase domain-containing protein [Prevotella oris C735]
gi|298575811|gb|EFI47688.1| ppic-type ppiase domain-containing protein [Prevotella oris C735]
Length = 477
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/349 (12%), Positives = 103/349 (29%), Gaps = 31/349 (8%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGD 337
++ D +++LK G F ++A + S G P +L ++ KKG+
Sbjct: 154 KQRIDSIYKALKAGADFSEMARKYSDDKGSASAGGSLPWLQPGQTLPEFEAQAYRLKKGE 213
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
+ GY I + + + N + +++
Sbjct: 214 MSLPFLSPAGYHIILLEDKSN------FLPYDSLRNDILCFIDQRNLRDKLIDDRLNERA 267
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ + + ++L D + K + + + L K
Sbjct: 268 QAAHTTPAAILEKQRMELEKNDPSLKYLIQEYHDGL------LLFEISNRTIWEKAARDE 321
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
Y K+ + R V VK+ K + + +++ K G
Sbjct: 322 AGLIDYFNHNKKKYRWSSPRYKGVV-FHVKEVSDVKKVTKALKK------VDFEKWGSIL 374
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
G + + +N + + +F P+++ Y V
Sbjct: 375 EKQFNQNGEIRVKAEKGIFKQGDNAWIDSE----IF---KHGTSPAPLKD---YPFSGVC 424
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
K+ + + + + I L+++Y V+++ N+++
Sbjct: 425 GKKLKAPKTMSDVRKQVLSDYQEAMEQQWIKDLRAKYPVSINQNILKTI 473
Score = 40.2 bits (91), Expect = 0.94, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 38/111 (34%), Gaps = 25/111 (22%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK------------------- 61
+ + + FS S V++V + V S F +++
Sbjct: 7 VIISLAMLLCGSMAFSQSNDPVVMTVNGKPVLRSEFEYAYRKNNSAGVIDRKSVAEYAEL 66
Query: 62 ------QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+ ++ ++ + + + + D++I +L++ A ++ I
Sbjct: 67 FIDYKLKVEAALAAQLDTLTSFQEEFAGCRDQQIRPSLINDADIEAEARRI 117
>gi|221633228|ref|YP_002522453.1| putative post-translocation molecular chaperone [Thermomicrobium
roseum DSM 5159]
gi|221156643|gb|ACM05770.1| putative post-translocation molecular chaperone [Thermomicrobium
roseum DSM 5159]
Length = 464
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/345 (10%), Positives = 88/345 (25%), Gaps = 49/345 (14%)
Query: 41 STVVSVGRQKVPFSSF----INSWKQELGMISQ----KIGFVVNSERARSVGLDKK---- 88
VV V + + + + ++ Q G + + ++
Sbjct: 66 QVVVEVNGEPITRADYWKMRRLELLNQISQYQQLANLMSGQQSVQYQQLADQARQQLTTV 125
Query: 89 --------ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ ++ + Q + +G+ D V FS ++
Sbjct: 126 ERDPINQATVGQMIDDRLVLQRMGQLGVALDEREVEDYTVSL---------FSSVPLLTP 176
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
GI+ + + E+ + V
Sbjct: 177 TPTLGIDPTAAAWATATAAVTPTPLPTPTPEPGVTPTPQATPTPTPSESPTPTPTVPPEE 236
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
Y+ ++ L D + ++ +++Q E+
Sbjct: 237 ARAT------------ATALMGEYQKNVLEQAGLSLADFQRLVVRPMLAREKVQRVLEER 284
Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFS 316
++ ++ A++A ++ G F +A E+ + LG
Sbjct: 285 IPLRAEQIHAA--HILLATREAAEQALADIQGGADFATIARERSIDSDTAPNGGDLGWLP 342
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
+ Y+P D + G+ + +G+ I V P
Sbjct: 343 RGYMPSA--FDEVAFALAPGEVGGPVQTQYGWHIVKVLERDPDRP 385
>gi|307294654|ref|ZP_07574496.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobium
chlorophenolicum L-1]
gi|306879128|gb|EFN10346.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobium
chlorophenolicum L-1]
Length = 461
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 14/143 (9%)
Query: 32 DALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
D V V + + + L G V+ E L
Sbjct: 57 DVTIFGKSDPNVRKATAIVNGRIITGTDVDQRLALILTA----NGGKVSDEE--KERLRV 110
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++L NL+ Q ++ D + R + + S F L +G +
Sbjct: 111 QVLRNLIDETLQIQEAAANDIKVDKAEIDQSYERVAA----NFRQSPSQFDQYLRAQGSS 166
Query: 148 EKEYIDHYTKMLSRTDVVGMFVG 170
L+ + ++ +
Sbjct: 167 SASIKRQIEGELAWSRLLRRNIQ 189
Score = 37.5 bits (84), Expect = 6.9, Method: Composition-based stats.
Identities = 27/287 (9%), Positives = 72/287 (25%), Gaps = 10/287 (3%)
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
++ ++ + + + S K ++ S + + + +
Sbjct: 180 WSRLLRRNIQPFVNVSEDEVKSVVDRMNAAKGSDEYRIGEIYLSATPENQQQIVANARNI 239
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ + A G A E + L+ V
Sbjct: 240 IEQIKQGGSFAAYARQFSEASTAAVGGDLGWVRPAQLPDELAQAAAEMQVGQLAGPIAVP 299
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS--KEGK 515
+ ++ + A R L + + T E+ S+KA + K
Sbjct: 300 GGVSIIYVMDKRKVLTADPRDALLSLKQLSVSFPAGTTKEQASAKAADFAAQIRTIKGCG 359
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
++G +GA ++ + + D + + V V
Sbjct: 360 QANELGGKIGADVVDNDNVKLRD-----LPPQLQDILLNLQVGEATPPFGSISDGVRVLV 414
Query: 576 V---TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
V + ++ ++ L + + L+ + +
Sbjct: 415 VCGRDEASSAAAPNAEQIMAQLEEERVNKRARIYLRDLRRDAVIDYN 461
>gi|297183681|gb|ADI19806.1| parvulin-like peptidyl-prolyl isomerase [uncultured alpha
proteobacterium EB000_37G09]
Length = 288
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 39/127 (30%), Gaps = 2/127 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+ ++E G +F +I K N + + F
Sbjct: 154 EEATARAIIEKLTGGADFAEIAKTDSTGPSGPNGGDLGYFARGAMVPTFEAAAFELEPGS 213
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
P++ + + KV + +V ++ + L Q + L ++ L++ ++
Sbjct: 214 FTPEPVQTQFGWHIIKVEDKRVATPPSFEEMVPQLRQNLLNQTLGRILEKLRASA--QIN 271
Query: 620 DNLIQRY 626
+
Sbjct: 272 KRSFENI 278
>gi|222056577|ref|YP_002538939.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
FRC-32]
gi|221565866|gb|ACM21838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
FRC-32]
Length = 340
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 47/156 (30%), Gaps = 9/156 (5%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
S S V + + + K + ++ + E+ ++ LD L+S
Sbjct: 47 SPSDPVAKINGTIITRKELDRAVKVLVAQ--NRLPQALPPEQ--QKQAEEAALDQLISAE 102
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ Q + ++ ++ +IA + +F L ++EK+ + K
Sbjct: 103 LMYQAGQKTEIKDIDKQIEEKIALNRAKFPNPEEFDKA-----LKSVEMSEKDLKEFTRK 157
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ T + + + +
Sbjct: 158 DIVITAFIEKNIISNINVAEADAKKFYDDNTEKFKQ 193
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 32/347 (9%), Positives = 86/347 (24%), Gaps = 18/347 (5%)
Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAK 334
+ G + + A + ++ S I
Sbjct: 6 ISLVAALAVFAIQSMPALGAEPQKTAASAEQKEVKETVKKVSPSDPVAKINGTIITRKEL 65
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
++ + K + + ++ K K + +
Sbjct: 66 DRAVKVLVAQNRLPQALPPEQQKQAEEAALDQLISAELMYQAGQKTEIKDIDKQIEEKIA 125
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
L + + + S+++ D K + A K + + D
Sbjct: 126 LNRAKFPNPEEFDKALKSVEMSEKDLKEFTRKDIVITAFIEKN-----IISNINVAEADA 180
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
D + + Q + + + + ++ KA ++ + K G
Sbjct: 181 KKFYDDNTEKFKQDESIRASHILIGVDAKA-------GEEDKKKAREKAEGIL-KKIKAG 232
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
++F + K + + + F+ V +E Y +
Sbjct: 233 EDFATLAKAESTCPSSKQGGDLGTFPKGQMVAPFENAAFALKPGEV-SDVVETQFGYHII 291
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVT 617
K+ K + + D+ + + + + + LKS+
Sbjct: 292 KLAEKKEAGMVKFDEVKTKIVDYLKSQKIQKGVGDYLEELKSKAKTE 338
>gi|118497158|ref|YP_898208.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
tularensis subsp. novicida U112]
gi|194323456|ref|ZP_03057233.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
novicida FTE]
gi|118423064|gb|ABK89454.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella novicida
U112]
gi|194322311|gb|EDX19792.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
novicida FTE]
Length = 469
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + + N++ + L ++ L +L+S + L
Sbjct: 52 NKTVAIVNSRPITSFELDQELAKLEA---MQPNSAFNTDPLK---LKRQALQDLISQSVL 105
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 106 LQLAERNNITISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIRDQL 161
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 162 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 210
>gi|87119766|ref|ZP_01075663.1| peptidyl-prolyl cis-trans isomerase SurA [Marinomonas sp. MED121]
gi|86165242|gb|EAQ66510.1| peptidyl-prolyl cis-trans isomerase SurA [Marinomonas sp. MED121]
Length = 416
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/385 (10%), Positives = 99/385 (25%), Gaps = 58/385 (15%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+ L L+ S ++ + + + + S + +
Sbjct: 4 IATLLCSSLLIASSFSVAATKVDGISAIIDSKAILDSDINTRFSIIKDRV---------P 54
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+ + ++IL+ +++ + +G+ + K
Sbjct: 55 GGKINDNVRRQILNQMINETLQTNYANRLGIRISEQEANQAVLNVAA----KMKLDLAGL 110
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP---SNLLLDQAKRFYFENRSVDY 194
LA++GI+ Y + + V G V + +
Sbjct: 111 KVALAQQGIDYSIYRNQIKNEILLGKVKGQVVRQRIIISDQEIEDFLNSDEALAKNNDQV 170
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE-- 252
+ + + S + EK + + E ++
Sbjct: 171 HLRHILIRDNASSQSADQILTIKEKITNEQDFIDQAIAYSSGQAALEGGDLGWRPLNQLP 230
Query: 253 ---LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA-------------------------- 283
+++ N Y E + L++ +K+
Sbjct: 231 LLFIKSLNANNGPLYGPIESSAGQHLLWLKEKKTASNALQEQTKSRHILLSANEIRNQTQ 290
Query: 284 -----DEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAK 334
+ +Q L KG+ F LA+E + L +K + +++
Sbjct: 291 TKAALEAIYQRLMKGQDFATLAKEFSEDKGSALKGGDLDWTAKGTMVPE--FEAVMKATS 348
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPS 359
G+ + +G+ I V +
Sbjct: 349 VGEISKPFRSQYGWHILKVEGRRSQ 373
Score = 45.6 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 33/357 (9%), Positives = 93/357 (26%), Gaps = 3/357 (0%)
Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
Q++ E + + + G + + Q + ++
Sbjct: 56 GKINDNVRRQILNQMINETLQTNYANRLGIRISEQEANQAVLNVAAKMKLDLAGLKVALA 115
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+S+ + ++ G + I + + + +
Sbjct: 116 QQGIDYSIYRNQIKNEILLGKVKGQVVRQRIIISDQEIEDFLNSDEALAKNNDQVHLRHI 175
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ ++ E E+ ++G ++ P + L +
Sbjct: 176 LIRDNASSQSADQILTIKEKITNEQDFIDQAIAYSSGQAALEGGDLGWRPLNQLPLLFIK 235
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+ + + +KE A + E+ + + + A
Sbjct: 236 SLNANNGPLYGPIESSAGQHLLWLKEKKTASNALQEQTKSRHILLSANEIRNQTQTKAAL 295
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
+ + + +G++F + K + + +D K V P
Sbjct: 296 EAIYQRLMKGQDFATLAKEFSEDKGSALKGGDLDWTAKGTMVPEFEAVMKATSVGEISKP 355
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKF---ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + KV + + +K K + L +L + LKS + +
Sbjct: 356 FRSQYGWHILKVEGRRSQDISDKIKQVNAKNTLIARKQDLVLSQWLDELKSTAFIDI 412
>gi|126641590|ref|YP_001084574.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii ATCC
17978]
Length = 414
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/377 (11%), Positives = 103/377 (27%), Gaps = 49/377 (12%)
Query: 34 LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
F+ V V + S + + + V L ++LD L
Sbjct: 3 SFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQKKEVPP-----QQYLQFQVLDQL 57
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEI---------ARSPLFHGKDNKFSHDVFVSRLARE 144
+ + ++ G++ D + + F K + + + + +R
Sbjct: 58 ILRQAQLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRI 117
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----------------DQAKRFYFE 188
+ +++SR + V S D +
Sbjct: 118 AEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNV 177
Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
+ V + + + A+ S A + + ++ + + + + I
Sbjct: 178 AKEVRSQLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLI 237
Query: 249 SNDE----LQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKKGKK 295
S + L+ K E+ ++ ++ D ++ LK G+
Sbjct: 238 SVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGED 297
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA SLG + + D G+ + FG+ I
Sbjct: 298 FATLAATYSNDTGSARDGGSLGWVTPGMMVPE--FDKKMQEIPVGEISEPFQTQFGWHIL 355
Query: 352 HVSNIKPSFTVSFQEVK 368
V++ + + +
Sbjct: 356 QVTDKREKDMTHEYQER 372
Score = 42.5 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 21/283 (7%), Positives = 80/283 (28%), Gaps = 5/283 (1%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I +F + + A E ++++
Sbjct: 128 QQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQ 187
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ ++ + + L +++ DG ++
Sbjct: 188 SNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLK 247
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + + + T + + E + + + + K G++F +
Sbjct: 248 LLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 307
Query: 527 SLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
+ + + + ++ PV + P + + + +VT+ + +
Sbjct: 308 DTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEI-SEPFQTQFGWHILQVTDKREKDMT 366
Query: 585 -QEKDKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +++ + +DS + +++ V + D + +
Sbjct: 367 HEYQERMARQILGERQFNTEIDSWLREVRANAYVEIKDPSLDK 409
>gi|78043454|ref|YP_359635.1| hypothetical protein CHY_0781 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995569|gb|ABB14468.1| hypothetical protein CHY_0781 [Carboxydothermus hydrogenoformans
Z-2901]
Length = 209
Score = 59.1 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/194 (9%), Positives = 56/194 (28%), Gaps = 17/194 (8%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
IF + + + + + +V + + + S K SQ
Sbjct: 17 IFFALAGLLLSVKFFLNVNQKTYQPNVLVIINGEALTTSEVNKVIKNYRIAGSQAANR-- 74
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL-----FHGKDN 130
+IL +L+ + Q + ++A + + + +
Sbjct: 75 ----------LDQILSDLIDEKLILQEAKRRKIDATREEIEARLKQLKNHLPSLYQQIYT 124
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+ S + L I +K Y + + ++ + + + + + E
Sbjct: 125 QMSEKEYKEILKNRIIIQKLYTEVISSQKNKPTGEHEPLETSQKEKEIFAKWVKELREKA 184
Query: 191 SVDYIVLNNRHVPA 204
+ ++ N ++
Sbjct: 185 DITFLQENIQNFKE 198
>gi|281423985|ref|ZP_06254898.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris F0302]
gi|281401910|gb|EFB32741.1| peptidyl-prolyl cis-trans isomerase [Prevotella oris F0302]
Length = 477
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/349 (12%), Positives = 101/349 (28%), Gaps = 31/349 (8%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL--ADSIFSLAKKGD 337
++ D +++LK G F ++A + G P +L ++ KKG+
Sbjct: 154 KQRIDSIYKALKAGADFSEMARKYSDDKGSALAGGSLPWLQPGQTLPEFEAQAYRLKKGE 213
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
+ GY I + + + N + +++
Sbjct: 214 MSLPFLSPAGYHIILLEDKSN------FLPYDSLRNDILCFIDQRNLRDKLIDDRLNERA 267
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ + + ++L D + K + + + L K
Sbjct: 268 QATHTTPAAILEKQRMELEKNDPSLKYLIQEYHDGL------LLFEISNRTIWEKAARDE 321
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
Y K+ + R + V+ VK+ K + + ++ K G
Sbjct: 322 AGLIDYFNHNKKKYRWSSPR-YKGVIFHVKEVSDVKKVTKALKK------ADFEKWGSIL 374
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
G + + +N + + P +K +P V
Sbjct: 375 EKQFNQNGEIRVKAEKGIFKQGDNAWIDSEIFKH--GAPPTPLKDYPFSG--------VC 424
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
K+ + + + + I L+++Y V+++ N+++
Sbjct: 425 GKKLKAPKTMSDVRKQVLSDYQEAMERQWIKDLRAKYPVSINQNVLKTI 473
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 38/111 (34%), Gaps = 25/111 (22%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK------------------- 61
+ + + FS S V++V + V S F +++
Sbjct: 7 VIISLAMLLYGSMAFSQSNDPVVMTVNGKPVLRSEFEYAYRKNNSAGVIDRKSVEEYAEL 66
Query: 62 ------QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+ ++ ++ + + + + D++I +L++ A ++ I
Sbjct: 67 FIDYKLKVEAALAAQLDTLTSFKEEFAGCRDQQIRPSLINDADIEAEARRI 117
>gi|115522177|ref|YP_779088.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisA53]
gi|115516124|gb|ABJ04108.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisA53]
Length = 309
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 46/135 (34%), Gaps = 6/135 (4%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+V V+T +E + +L K+G +F ++ K + +
Sbjct: 146 EPEVHARHILVETEDEAKAVVEEL-----KKGADFAELAKKKSKDPGAADGGDLGFFTKD 200
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
+ + F+ V P+++ + V KV + + D+ + + +
Sbjct: 201 QMVPEFSTAAFALEPGKV-SEPVKSQFGWHVIKVEEKRNRKAPDFDQVKGQIETYVARKA 259
Query: 603 LDSVIAYLKSQYSVT 617
+ L+++ +
Sbjct: 260 QADYVTKLRAEAKIE 274
Score = 38.3 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 8/75 (10%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 34 LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
+ + + V V ++ S + ++ ++Q + +L L
Sbjct: 32 VRAQDANPVVAKVNGTEIRQSDLTLAEEELAPNLAQM----------DPAARKENVLAFL 81
Query: 94 VSGATLDQFIEDIGL 108
+ + + ED +
Sbjct: 82 IDMRIVAKAAEDKKI 96
>gi|167033456|ref|YP_001668687.1| SurA domain-containing protein [Pseudomonas putida GB-1]
gi|166859944|gb|ABY98351.1| SurA domain [Pseudomonas putida GB-1]
Length = 213
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 7/160 (4%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V ++ + + L + + + N + L + LD L+ L Q
Sbjct: 21 PAARVNGVEIELLRLERYFSEYLDAQGRAVTSIRNPGLYKR--LRDQALDELIDKELLWQ 78
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G+ RV + G S VF RLA G + +Y ++ + ++
Sbjct: 79 EAQRQGIAVSDERVSAHVGEVEAAFG-----SPAVFERRLAEAGFDRAQYTEYTRQDMAA 133
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
V PS ++ E +N
Sbjct: 134 QQVYAQLSAVDAPSQGEVEAFYDANKERLQGAQNQSDNPS 173
>gi|46199933|ref|YP_005600.1| hypothetical protein TTC1631 [Thermus thermophilus HB27]
gi|46197560|gb|AAS81973.1| hypothetical conserved protein [Thermus thermophilus HB27]
Length = 608
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 58/424 (13%), Positives = 121/424 (28%), Gaps = 45/424 (10%)
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK-- 305
+ +E++ YE KE Y + Q+V ++ A+E K G+ F LA + K
Sbjct: 160 PTEEEVRFYYEVFKENYRTEPRVKARQIVVDDKALAEELAAKAKAGEDFAALARQHSKVG 219
Query: 306 SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ +LG+ E P + +++F+L G I Y I V
Sbjct: 220 AEQGGALGAGPGEAEPKPVTQVVFPTEVGEAVFALKGPGVVG-PIAAGGRYYIVKVEEYL 278
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
PS +F+EVK +A K + ++ + L + + + D + +
Sbjct: 279 PSTLPAFEEVKDRVAQDAERAKGNGVLEAYLEELRKKAQVRFAEDNPYAYQNPPVAKVNE 338
Query: 418 VD--------------------FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ G + E L+ R +
Sbjct: 339 KEILLSEVLQPVFSNQQTVALVQQGLGELAVQFFLPQTLENLIDRELLVEAARKSGKPFI 398
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE---- 513
++ EE ++ E +
Sbjct: 399 GSKAEIAEAYLRYETRDVTASEEEARAFYSENPALFTVPASAKVIGVNFKEEAQAKAFRA 458
Query: 514 ----GKNFRDIGKNLGASLLTTNQIN--RMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
G + + K ++ +N ++ + GP+ V
Sbjct: 459 AALRGGDLEALAKAQEGTVTDYGTVNPNQLPAVLDRLVFKITETFPQGPLGEVSEVIKME 518
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQ----MMNKDLLDSVIAYLKSQYSVTVHDNLI 623
SY V +++ K ++ + Q + ++I L+ + + +
Sbjct: 519 DGSYTVLLISDRKAEELKGFAQVAEEARQGAVNRKRSEKAQALIQALREEAKIENRLAEV 578
Query: 624 QRYL 627
+ L
Sbjct: 579 LQAL 582
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/199 (13%), Positives = 48/199 (24%), Gaps = 14/199 (7%)
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
+ L + S Y V + + V D
Sbjct: 139 AEVKTQLQIQKRLEQIRSGAKPTEEEVRFYYEVFKENYR---TEPRVKARQIVVDDKALA 195
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ + + K + G LGA F + VF
Sbjct: 196 EELAAKAKAGEDFAALARQHSKVGAEQGGALGAGPGEAEP---KPVTQVVFPTEVGEAVF 252
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ----MMNKDLLDSVIAY 609
+ V PI G Y + KV + ++ + Q +L++ +
Sbjct: 253 ALKGPGV-VGPIAAGGRYYIVKVEEYLPSTLPAFEEVKDRVAQDAERAKGNGVLEAYLEE 311
Query: 610 LKSQYSV---TVHDNLIQR 625
L+ + V + Q
Sbjct: 312 LRKKAQVRFAEDNPYAYQN 330
Score = 44.1 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 40 SSTVVSVGRQKVPFSSFINSW---KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
+ V V +++ S + +Q + ++ Q +G + L+NL+
Sbjct: 330 NPPVAKVNEKEILLSEVLQPVFSNQQTVALVQQGLG------ELAVQFFLPQTLENLIDR 383
Query: 97 ATLDQFIEDIG--LEADHGRVWGE 118
L + G +
Sbjct: 384 ELLVEAARKSGKPFIGSKAEIAEA 407
>gi|153008357|ref|YP_001369572.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
anthropi ATCC 49188]
gi|151560245|gb|ABS13743.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ochrobactrum
anthropi ATCC 49188]
Length = 326
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/159 (8%), Positives = 51/159 (32%), Gaps = 3/159 (1%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+ D+++ + V+ + + +A ++ + + G F D+ K
Sbjct: 148 DDVRARYDKEIAAMPPQVE--VRARHILVKTKEEAEAIIKKL-EGGAKFEDLAKESSTDG 204
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
N + + F+ P++ + V ++ + + D
Sbjct: 205 TAANGGDLGYFAEGQMVPEFEKAAFALKPGEYTKEPVQTQFGFHVIQLEDRRTKQPPAFD 264
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ + ++ ++ + L+ + D +++ +
Sbjct: 265 QVKDQIRSIIMRERYVETVKKLRDGMKIDYKDPAVEKAM 303
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 31/197 (15%), Positives = 74/197 (37%), Gaps = 4/197 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ ++ E+ R + + + +IS+D+++A Y+K ++
Sbjct: 115 DQSQEFKNRMEFLRERALHNEYFKDAVVDKISDDDVRARYDKEIAAMPPQVEVRARHILV 174
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAK 334
++EA+ + L+ G KF LA+E + LG F++ + + F+L
Sbjct: 175 KTKEEAEAIIKKLEGGAKFEDLAKESSTDGTAANGGDLGYFAEGQMV-PEFEKAAFALKP 233
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FG+ + + + + +F +VK I + + + E VK+ ++
Sbjct: 234 GEYTKEPVQTQFGFHVIQLEDRRTKQPPAFDQVKDQIRSIIMRERYVETVKKLRDGMKID 293
Query: 395 LALGTSMDEISRREKIV 411
+
Sbjct: 294 YKDPAVEKAMKDAAAAQ 310
Score = 37.9 bits (85), Expect = 5.4, Method: Composition-based stats.
Identities = 23/288 (7%), Positives = 65/288 (22%), Gaps = 18/288 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S + +V + + S+ + L L+ +
Sbjct: 56 SKVLATVNGNDITVGEVDQAAGDLDPQFSR----------LPAEQRRLAALAALIDIKAM 105
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
E L+ E F + + + + I++ + Y K +
Sbjct: 106 AGEAEKEKLDQS-----QEFKNRMEFLRERALHNE--YFKDAVVDKISDDDVRARYDKEI 158
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + + L + L + E
Sbjct: 159 AAMPPQVEVRARHILVKTKEEAEAIIKKLEGGAKFEDLAKESSTDGTAANGGDLGYFAEG 218
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ + + + +L+ K + + + ++
Sbjct: 219 QMVPEFEKAAFALKPGEYTKEPVQTQFGFHVIQLEDRRTKQPPAFDQVKDQIRSIIMRER 278
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
E + + K + A E+ + + K+ P+ +
Sbjct: 279 YVETVKKLRDGMK-IDYKDPAVEKAMKDAAAAQEGADKDDAPEEAAPQ 325
>gi|254373986|ref|ZP_04989468.1| peptidyl-prolyl cis-trans isomerase [Francisella novicida
GA99-3548]
gi|151571706|gb|EDN37360.1| peptidyl-prolyl cis-trans isomerase [Francisella novicida
GA99-3548]
Length = 469
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + + N++ + L ++ L +L+S + L
Sbjct: 52 NKTVAIVNSRPITSFELDQELAKLEA---MQPNSAFNTDPLK---LKRQALQDLISQSVL 105
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 106 LQLAERNNITISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIRDQL 161
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 162 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 210
>gi|23015619|ref|ZP_00055390.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
magnetotacticum MS-1]
Length = 421
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/154 (11%), Positives = 43/154 (27%), Gaps = 11/154 (7%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+A+ +V+ + F L + V + + K + +
Sbjct: 2 LARAAIVLNALLFACVPL-SWASAQDVDRIAAVVNDEIISIRDLDARLKLAITV------ 54
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ ++L +V Q + + A V +A N+
Sbjct: 55 SGLPDNIESRRRAVPQVLRKMVDERIQAQEAARLKVSAGTEDVARGLANVEN----QNRM 110
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
++ LA+ G++ D + ++
Sbjct: 111 PPGSLLTSLAKAGVDPDAVKDQIRADIIWVKLIM 144
>gi|239617251|ref|YP_002940573.1| hypothetical protein Kole_0859 [Kosmotoga olearia TBF 19.5.1]
gi|239506082|gb|ACR79569.1| hypothetical protein Kole_0859 [Kosmotoga olearia TBF 19.5.1]
Length = 323
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 10/137 (7%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK---- 70
K ++ L V F + + + ++ V +V + + F+ I++K
Sbjct: 3 KFLVISLLVLFSAGIFATSEINPDKTTPVATVNGEPITMYEFLAEVMPNYMEIAKKVEEV 62
Query: 71 ---IGFVVNSERARSVGL---DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
V+ S A L +K++L ++ Q + + + D + +I +
Sbjct: 63 DPLFSEVLTSTEAGKTLLTEYEKRVLAKMIERKLFLQLAKQLDVAIDMQALKEKIHNIII 122
Query: 125 FHGKDNKFSHDVFVSRL 141
+ K+N S ++
Sbjct: 123 QNLKENNISIEIADLYY 139
>gi|39933588|ref|NP_945864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris CGA009]
gi|39647434|emb|CAE25955.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris CGA009]
Length = 311
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 6/135 (4%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+V V+T +E + A +L K+G +F ++ K ++ +
Sbjct: 149 EQEVHARHILVETEDEAKAVAEEL-----KKGADFAELAKKKSKDPGASDGGDLGFFTKD 203
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
+ + F+ + PI+ + + KV + D+ + + Q + +
Sbjct: 204 QMVPEFSAAAFALEPGKI-SDPIKTQFGWHIIKVEEKRNRKPPSFDQVKAQIEQYVTRKA 262
Query: 603 LDSVIAYLKSQYSVT 617
++ L+ +
Sbjct: 263 QSDYVSKLRQAAKIE 277
>gi|92116105|ref|YP_575834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
hamburgensis X14]
gi|91798999|gb|ABE61374.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
hamburgensis X14]
Length = 308
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 39/117 (33%), Gaps = 1/117 (0%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+ + V + K+G +F ++ K ++ + + + F+ +
Sbjct: 162 EEEAKKVEDELKKGADFAELAKKESKDPGASDGGDLGFFTKEQMVPEFSKVAFALEPGKI 221
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P++ + + KV + D+ + Q + + +A L+ +
Sbjct: 222 -SDPVKTQFGWHIIKVEEKRARKAPAFDQVKPQIEQFVTRKAQADYVAKLRETAKIE 277
Score = 41.4 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 11/114 (9%), Positives = 35/114 (30%), Gaps = 11/114 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
M + + ++ L L + + + + + + V ++ S +
Sbjct: 1 MTTSLPATKHSLRVRLALSALGGCLALTLLVGTPVRADDLNPVLAKVNGSEIRQSDVNVA 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
+++G + + + +L L+ + + ED +E
Sbjct: 61 --------EEELGPGL--AQMDPAAKQENVLSFLIDMKIIAKAAEDKKIENSED 104
>gi|15805112|ref|NP_293797.1| peptidyl-prolyl cis-trans isomerase [Deinococcus radiodurans R1]
gi|6457733|gb|AAF09662.1|AE001870_1 peptidyl-prolyl cis-trans isomerse, putative, PpiC family
[Deinococcus radiodurans R1]
Length = 677
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/249 (10%), Positives = 62/249 (24%), Gaps = 13/249 (5%)
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
A + + + A+ + + ++ V+ ++ V + K K L
Sbjct: 98 ADDAKVYLVSQAIDRGAVLSGLKDVQVSRADVNAEVQKVRESNKLTDNKAWTDALQSNGL 157
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
F + + ++ L + + +
Sbjct: 158 TDASFRTQVRQQLAYQRKTDELRKAVPAPTDAELKAYYDLNKSKYQAEPQIVGRQIVVTD 217
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI-------NRMDNENKFFGYDGISQV 552
+KA L+ + + G +F +
Sbjct: 218 KAKAQSLLAQA-RGGADFAVLASANSTENKDRGGALAPLDGNQPRPVLQAALPTAVGEAA 276
Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK----FISYLTQMMNKDLLDSVIA 608
F + IE+G + + KV G + ++ +S + Q L+
Sbjct: 277 FRLKNGGL-TDVIESGGKFYIVKVEKFLPGQPKTFEQAKTDVVSAVRQQKQNAALEKWSD 335
Query: 609 YLKSQYSVT 617
L+ V
Sbjct: 336 DLRKNAQVE 344
Score = 57.2 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 73/669 (10%), Positives = 183/669 (27%), Gaps = 141/669 (21%)
Query: 13 VAKIFLVVLFVPFL--IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ V+L +LF+ + V+ V V ++ ++ +++ +
Sbjct: 34 LLIGLSVLLVAGMAYQFTPNVGSLFNRQEGTPVIKVNGDAVTAEQLESA-RRASPLLADE 92
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
G V+ + ++ + + ++D ++ V E+ + +
Sbjct: 93 PGSVLADDA------KVYLVSQAIDRGAVLSGLKD--VQVSRADVNAEVQKV---RESNK 141
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+ + L G+ + + + L
Sbjct: 142 LTDNKAWTDALQSNGLTDASFRTQVRQQL------------------------------- 170
Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
Y + A+ P++A L +++ K Y+A
Sbjct: 171 --AYQRKTDELRKAVPAPTDAELKAYYDLNKSKYQAEPQIVGRQ---------------- 212
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
+V ++ +A + G F LA D
Sbjct: 213 ------------------------IVVTDKAKAQSLLAQARGGADFAVLASANSTENKDR 248
Query: 311 SLGSFS-KEYIPDVSLADSIF-------SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
P L ++ K G T VI + I V P
Sbjct: 249 GGALAPLDGNQPRPVLQAALPTAVGEAAFRLKNGGLTDVIESGGKFYIVKVEKFLPGQPK 308
Query: 363 SFQEVKKDIANQMRITKAS----EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+F++ K D+ + +R K + + + K + T E + ++P
Sbjct: 309 TFEQAKTDVVSAVRQQKQNAALEKWSDDLRKNAQVEYVDPTWKVENPTVASVAGHNIPYS 368
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW------------- 465
D + + +++A + + ++ + K V Y
Sbjct: 369 DVVAQVMNNQQIAGL-IGQLPAEQLPTLLNKTFKPQVVQQLIQGYAAPNIAQKLGLSLSG 427
Query: 466 ----------------VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
V++ ++ + + +V + + + ++A +
Sbjct: 428 SRQEIAQQLAAYGARDVKVSDADVQKYYRENVKQYEVPASATLDEASFKDKNQAAAFRAD 487
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS------GPVEMVKCF 563
++ +G +F G ++ Q++ ++ + F G +
Sbjct: 488 WNGQG-DFVTAASKAGGTVSERGQVSPTADQTTGAVSPLTAAAFGQNLRSVGAGSLTPVV 546
Query: 564 PIENGLSY-VVFKVTNSKVGPVQEK-DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
P+ + S V + P+ E D+ L + + + S S +
Sbjct: 547 PVGDRFSVGYVRDLVRPTTRPLSEVGDEIRQGLLSSKQAEAGQAFLDKQVSALSPKNN-- 604
Query: 622 LIQRYLDGE 630
+ + L+ +
Sbjct: 605 -LDQVLEAQ 612
>gi|254468048|ref|ZP_05081454.1| chaperone SurA, putative [beta proteobacterium KB13]
gi|207086858|gb|EDZ64141.1| chaperone SurA, putative [beta proteobacterium KB13]
Length = 428
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/416 (11%), Positives = 112/416 (26%), Gaps = 20/416 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ IF + L V F L V V + + + + L Q
Sbjct: 3 NYLIKIIFFLCLLVNFSFVSSYQEL-----DRIVAIVNKDVITHNDLTEGVDKALLFFQQ 57
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ E ++KK+LD L+ ++ + ED ++A + I
Sbjct: 58 N-----SIEPPEESIIEKKVLDELIEQKIIEGYAEDWNIKASQEDIDSLIQNILS----A 108
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
N+ + D S L ++G + + + + + V + + + +
Sbjct: 109 NQITLDELKSNLKQQGSSYDKLLKSLSYEIILKKVKNREISSKLNISEYEIKKHKEKMAK 168
Query: 190 RSVDYIVLNNRHVPAIADPSNA------VLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
D L++ + ++P+ L + + D +E
Sbjct: 169 IRPDVFDLSHILIKFSSEPTAEEKKEKRKLGEEIFDKLKTDDFAKIAYEFSDSPDANEGG 228
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
++ EL + + E T + +S + K Q ++
Sbjct: 229 SLGKLKQSELPEIFIDKLNNLSAGEYSTPFESNNGIHIIKINQVESYSESKNSSQKIKKY 288
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
+ + E L + DF+ + A
Sbjct: 289 FIKHIVLKTSEVASEDDVIKKLKRYKNEIDSGADFSVIAKKYSEDFSAANGGEIGWINEG 348
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ + D + + + + ++++ I L++
Sbjct: 349 LLDQEFDKQLSIIDQNEVSQPFKTDLGWHIIQYTDSKFEDLASENIDNKIKYELIN 404
>gi|114331519|ref|YP_747741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
eutropha C91]
gi|114308533|gb|ABI59776.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas
eutropha C91]
Length = 264
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/152 (9%), Positives = 43/152 (28%), Gaps = 8/152 (5%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++ + +E + + V+S V E ++ K+ G
Sbjct: 121 LRKEYESVKSQMGDKEYKARHILVETEQEAKDLVASLKKGGVFEKLAGERSIDTGSKSNG 180
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
L ++ + + P++ + V ++ + +
Sbjct: 181 GELGWSSAAVYVKPFSDALT--------KLKKGETTSQPVQTPFGWHVIRLDDVRTAVPP 232
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
D+ + Q + + +V+ L+ V
Sbjct: 233 SFDEVKQNMQQRVLQRKFAAVVESLRKNAKVE 264
Score = 44.8 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 15/99 (15%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ + F+ S G TV V +P S K +
Sbjct: 11 LAVLGFVCT----TPLSAQGGGTVAKVNGIAIPQSRLDLVIKAATAQ-----------GQ 55
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
S + + +NL++ L Q GL+ + V
Sbjct: 56 PDSAEMRNALRENLITEEVLTQEAIKKGLDRNPDVVTQI 94
>gi|260654336|ref|ZP_05859826.1| peptidyl-prolyl cis-trans isomerase family protein [Jonquetella
anthropi E3_33 E1]
gi|260630969|gb|EEX49163.1| peptidyl-prolyl cis-trans isomerase family protein [Jonquetella
anthropi E3_33 E1]
Length = 318
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 42/137 (30%), Gaps = 4/137 (2%)
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ K E KA ++ + F +++ + +
Sbjct: 158 SDKEVAEAKDKAMDIIKKIKSGSLEFSKAAQDMSSCPSKVQGGDLGFFSKGQMVPAFEKA 217
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVI 607
F+ + P+ + + KVT++ D + + ++ I
Sbjct: 218 AFALKPGEMTSEPVRTDFGFHIIKVTDAHPAKTMPLDDVKASIKSTLSSQAKLAAFQKAI 277
Query: 608 AYLKSQYSVTVHDNLIQ 624
A L+ +Y V + D ++
Sbjct: 278 AELRQKYPVEILDESLK 294
>gi|55980321|ref|YP_143618.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB8]
gi|55771734|dbj|BAD70175.1| peptidyl-prolyl cis-trans isomerse, PpiC family [Thermus
thermophilus HB8]
Length = 608
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 58/424 (13%), Positives = 121/424 (28%), Gaps = 45/424 (10%)
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK-- 305
+ +E++ YE KE Y + Q+V ++ A+E K G+ F LA + K
Sbjct: 160 PTEEEVRFYYEVFKENYRTEPRVKARQIVVDDKALAEELAAKAKAGEDFAALARQHSKVG 219
Query: 306 SLSDISLGSFSKEYIPDV--------SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ +LG+ E P + +++F+L G I Y I V
Sbjct: 220 AEQGGALGAGPGEAEPKPVTQVVFPTEVGEAVFALKGPGVVG-PIAAGGRYYIVKVEEYL 278
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
PS +F+EVK +A K + ++ + L + + + D + +
Sbjct: 279 PSTLPAFEEVKDRVAQDAERAKGNGVLEAYLEELRKKAQVRFAEDNPYAYQNPPVAKVNE 338
Query: 418 VD--------------------FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ G + E L+ R +
Sbjct: 339 KEILLSEVLQPVFSNQQTVALVQQGLGELAVQFFLPQTLENLIDRELLVEAARKSGKPFI 398
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE---- 513
++ EE ++ E +
Sbjct: 399 GSKAEIAEAYLRYETRDVTASEEEARAFYSENPALFTVPASAKVIGVNFKEEAQAKAFRA 458
Query: 514 ----GKNFRDIGKNLGASLLTTNQIN--RMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
G + + K ++ +N ++ + GP+ V
Sbjct: 459 AALRGGDLEALAKAQEGTVTDYGTVNPNQLPAVLDRLVFKITETFPQGPLGEVSEVIKME 518
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQ----MMNKDLLDSVIAYLKSQYSVTVHDNLI 623
SY V +++ K ++ + Q + ++I L+ + + +
Sbjct: 519 DGSYTVLLISDRKAEELKGFAQVAEEARQGAVNRKRSEKAQALIQALREEAKIENRLAEV 578
Query: 624 QRYL 627
+ L
Sbjct: 579 LQAL 582
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/199 (13%), Positives = 48/199 (24%), Gaps = 14/199 (7%)
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
+ L + S Y V + + V D
Sbjct: 139 AEVKTQLQIQKRLEQIRSGAKPTEEEVRFYYEVFKENYR---TEPRVKARQIVVDDKALA 195
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ + + K + G LGA F + VF
Sbjct: 196 EELAAKAKAGEDFAALARQHSKVGAEQGGALGAGPGEAEP---KPVTQVVFPTEVGEAVF 252
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ----MMNKDLLDSVIAY 609
+ V PI G Y + KV + ++ + Q +L++ +
Sbjct: 253 ALKGPGV-VGPIAAGGRYYIVKVEEYLPSTLPAFEEVKDRVAQDAERAKGNGVLEAYLEE 311
Query: 610 LKSQYSV---TVHDNLIQR 625
L+ + V + Q
Sbjct: 312 LRKKAQVRFAEDNPYAYQN 330
Score = 44.1 bits (101), Expect = 0.070, Method: Composition-based stats.
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 11/84 (13%)
Query: 40 SSTVVSVGRQKVPFSSFINSW---KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
+ V V +++ S + +Q + ++ Q +G + L+NL+
Sbjct: 330 NPPVAKVNEKEILLSEVLQPVFSNQQTVALVQQGLG------ELAVQFFLPQTLENLIDR 383
Query: 97 ATLDQFIEDIG--LEADHGRVWGE 118
L + G +
Sbjct: 384 ELLVEAARKSGKPFIGSKAEIAEA 407
>gi|127511815|ref|YP_001093012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
PV-4]
gi|126637110|gb|ABO22753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella loihica
PV-4]
Length = 434
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/195 (13%), Positives = 65/195 (33%), Gaps = 12/195 (6%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+ +L + +V V + V S +N K G +
Sbjct: 7 LIFALLTLAM---SHGAMAENVPLDRVTVQINEGIVLESEIVNMLKTVKANAKA-AGQSL 62
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
S++A L ++++ L+ Q + IGL ++ I K+ K + +
Sbjct: 63 PSDKA----LRTQVIERLIVTRLQLQMADRIGLHIGDLQLDQTIENI----AKEQKMTPE 114
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
+ ++ EG++ +Y + + ++ ++ + V + + E + + +
Sbjct: 115 MMREKVEAEGMSWSQYREQLREEITLGEIQRIQVQRRIQVSPQEINSLVKLIEEQGMQQV 174
Query: 196 VLNNRHVPAIADPSN 210
H+ S
Sbjct: 175 EYQIGHILIEVPNSP 189
Score = 44.5 bits (102), Expect = 0.053, Method: Composition-based stats.
Identities = 21/287 (7%), Positives = 83/287 (28%), Gaps = 10/287 (3%)
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ + P S ++ ++ Q + + E S + +
Sbjct: 147 QVQRRIQVSPQEINSLVKLIEEQGMQQVEYQIGHILIEVPNSPNSEQLEAASSRANAVLK 206
Query: 409 KIVS-----IDLPLVDFAGKDVKGKEVAAIPYKEQL-LFRVFGKDDPLSKDHTVALPDGS 462
++ K ++G + E LF
Sbjct: 207 RLQDNADFKQTAIASSSGPKALEGGIWDYMNVNEMPTLFAELLVGAKTGDIIGPVRSGAG 266
Query: 463 YMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ +++ ++ + ++++EV + + + + E + ++ + + +F +
Sbjct: 267 FHIIKVMDARGLQTKEIDEVRSRHILIKPSPILSEERAKAMLDKFAAQLRRGEADFATLA 326
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ + + + + +Q P + + + ++ +
Sbjct: 327 RQYSEDPGSAAKGGELGWADPTVYVPAFAQTLGALKINEISEPFRSSHGWHIVQLEERRK 386
Query: 582 GPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+K ++ + + + L + + ++++ + V D R
Sbjct: 387 TDATDKFNTNRAHQLIFRRKFNEELQNWLDEMRAEAYIEVFDADFNR 433
>gi|86749597|ref|YP_486093.1| hypothetical protein RPB_2477 [Rhodopseudomonas palustris HaA2]
gi|86572625|gb|ABD07182.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
Length = 309
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/200 (12%), Positives = 50/200 (25%), Gaps = 21/200 (10%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+ + +IF L W + S V V + + + +L +S
Sbjct: 2 TTKFSFRIFAAALCCAVASW---SGIGLARAQSVAVMVNGEPITNFDIEQ--RSKLDKLS 56
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
+ +++LD L+ + + G+ + A
Sbjct: 57 NQSRT------------RQQVLDELIDEKVKIREGKKFGVNPSDSDIDSSFASMSS---- 100
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
+ S D V LA +GI + T +V QA+
Sbjct: 101 RMRMSPDQMVKMLAAQGIRPGTLKSKIKAEMVWTSLVRGRFKDSLLVGEKDIQAQLAAKG 160
Query: 189 NRSVDYIVLNNRHVPAIADP 208
+ +
Sbjct: 161 GDDKSTTESFEYQMRPVVLI 180
>gi|294672824|ref|YP_003573440.1| peptidylprolyl isomerase domain-containing protein [Prevotella
ruminicola 23]
gi|294472529|gb|ADE81918.1| peptidylprolyl isomerase domain protein [Prevotella ruminicola 23]
Length = 477
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/419 (10%), Positives = 112/419 (26%), Gaps = 30/419 (7%)
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL-QAEYEKNKEKYFSPEI 269
L+ + ++Y+ + + + + E + + +
Sbjct: 82 DTLSSFRQEYQMYRDQQVRPTMVTDAEVLDQARQMYERTQAMIGSKGLVRPAHILLKLST 141
Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI 329
+ Q + D +++L+ G F +LA++ + G P +L +
Sbjct: 142 QATVQQQEKIHQRIDSVYRALQAGADFAELAKKVSEDTGSAVRGGELPWIAPSQTLKEFE 201
Query: 330 F--SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
G + GY I + K + + + + +
Sbjct: 202 DVAYSLAPGQLSQPFLSPVGYHIILMKERKQLEPFDSLKQSIVASLERHGIRNEIADMKL 261
Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
R+ + + K + D + Y + LL
Sbjct: 262 RNRVA----------ASAGKLKPNDVMQQKADSVAAANSELKYLFKEYHDGLLLYEISNR 311
Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
+ SK + ++ K+ R A V +K +
Sbjct: 312 EVWSKAQNDEIALKAWFDTHKKKYTWKEPRYRG--------------IAYHVKTKQDVKA 357
Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
++ + F + L + + + R+ E F + + +
Sbjct: 358 VKQCVKNLPFDQWAEALRTTF-NPDSVIRIRVEKGLFKLGDNPTIDKMVFKQATSSTSD- 415
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+Y + V K+ + + + L + L+ +Y V V+ +++
Sbjct: 416 -ANYPIDAVYGKKLKRPDNYQDVRQQVVEDLQDYLEQEWVEALRHRYQVEVNQEVLKTV 473
>gi|312134560|ref|YP_004001898.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
owensensis OL]
gi|311774611|gb|ADQ04098.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
owensensis OL]
Length = 335
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/183 (10%), Positives = 55/183 (30%), Gaps = 4/183 (2%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS--Q 69
+ + ++ + +I + + + + V V +K+ F ++K ++ +
Sbjct: 7 IMLFSIVSIVLLIIVIAVTPEIVKYMDENRAVAIVNGEKITKKEFAINYKSQINYYGLDK 66
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
++ + + ILD+L+ Q + + +
Sbjct: 67 AFLSQKVGDKTYEQQIKEDILDSLILRQIELQQARKRNITLTSAEKKAIDQQIEQYKSDS 126
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
S F L G E ++ D K + + + S+ ++ + +
Sbjct: 127 Q--SGAEFKQYLQTIGATENDFKDQVIKSQIISKLYDEVTKSQKASDAEIESYYNSHKSD 184
Query: 190 RSV 192
Sbjct: 185 FVE 187
>gi|220918358|ref|YP_002493662.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219956212|gb|ACL66596.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 587
Score = 58.7 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/582 (9%), Positives = 138/582 (23%), Gaps = 75/582 (12%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ V + Q V + + +K G + + K +L L+
Sbjct: 70 AQTPVARIDDQVVRLAELQEALAATHD--ERKAGAATSPDF-------KAVLQRLIDSRL 120
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
L ++GL P + F L ++ + + +
Sbjct: 121 LIMEAREMGL-----------DELPELKEQLAVFKDVTLRETLQQQLTKDVKPDALEVER 169
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + V V + A + + A+ + +
Sbjct: 170 VYKESVRRWKVRSLLFRQEEDAAAVKPALAGGKGFAELAKQLIAEKKAEGTGEPEVLPPD 229
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ A + + + E ++ + + Q
Sbjct: 230 QTLPAVAAALKPLQKGEATTPLKLQNGFAVLYVEDIVYPSDPAKRAEAEKASVDRQ---- 285
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+ + + L + I A + G + + + GD
Sbjct: 286 SGQLLTAFRKELDRKYVKIDEALLRKIDFDAPKPGFAVLVKDKRPIVRIAGEAPITVGDL 345
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ F + + K + + I ++ +A + + + +
Sbjct: 346 ANAVGEKFFHGVEKPQQEKRVDKLKRPRLDGLIYKRVFTKEARVRKLDQSEEYLRAVEDQ 405
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ G V+ V + K++ L + +
Sbjct: 406 ENSM-----------------VFGTFVQRVLVPDVSLKDEDLRAYYDGHRDEFTSAPL-- 446
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
++++ A + + AE ++ + L+ + EG+
Sbjct: 447 -------YRLEQVAFADMKG-------------AQRAAERLARGTDFKWLKANAEGQLPP 486
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
K D + S V + G YVV V+
Sbjct: 487 A---------QRALDFEGQLLSAKGLPEDLAGALGSAQVGDYRLHQGPRGQGYVVLVVSR 537
Query: 579 SKV---GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + + L + A L++ + +
Sbjct: 538 TEPQVQPYAEARPDIQKKLFGQALNRAVTDWAAKLRAAHEIE 579
>gi|295676529|ref|YP_003605053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1002]
gi|295436372|gb|ADG15542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1002]
Length = 259
Score = 58.3 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 42/119 (35%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G +F D+ + + +D ++ K + +
Sbjct: 142 EQQAKDLIAKI-KAGASFEDLARQYSKDPGSGKNGGDLDWSDPKAYVPEFADAAAHLQKG 200
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+ + + +V + + ++ + + Q + ++ L + L+ +
Sbjct: 201 QMTDTPVHTQFGWHIIRVDDIRAVTPPPLEQVRAQIVQQIQQEKLQAFEENLRKNAKIQ 259
Score = 37.9 bits (85), Expect = 5.8, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S +Q + Q + L + + + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADALIQQLVHQGQQ-----------DTPQLQQAVREELVNREILM 71
Query: 101 QFIEDIGL 108
Q GL
Sbjct: 72 QEALRRGL 79
>gi|209885477|ref|YP_002289334.1| SurA N- domain family [Oligotropha carboxidovorans OM5]
gi|209873673|gb|ACI93469.1| SurA N- domain family [Oligotropha carboxidovorans OM5]
Length = 330
Score = 58.3 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/200 (10%), Positives = 48/200 (24%), Gaps = 18/200 (9%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALF-SVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+ +F+ + + F + + SV VV V + +
Sbjct: 20 NAPLLSVFVSRIALAFAAFIILAVTAPSVQAQGIVVMVNGEPITTYDIEQR--------- 70
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
+ + R ++ L L+ + + G++ V A +
Sbjct: 71 ----TKLITLTTRKAPTRQQALQELIDDRLKIKEAKKFGVDLSASDVDSAFAGM----AQ 122
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
+ S D L +G+ + +V QA
Sbjct: 123 RMRISSDQLAQVLQAQGVRPDTMKFRLKADTAWGALVRGRFKQSLLVGERDVQAAVGENP 182
Query: 189 NRSVDYIVLNNRHVPAIADP 208
+ + + P
Sbjct: 183 SGERTESYEYHMRPIVLFVP 202
>gi|90409117|ref|ZP_01217239.1| diadenosinetetraphosphatase [Psychromonas sp. CNPT3]
gi|90309791|gb|EAS37954.1| diadenosinetetraphosphatase [Psychromonas sp. CNPT3]
Length = 413
Score = 58.3 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 9/166 (5%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V ++ + S K + + + L ++ILD L++ + Q
Sbjct: 10 AIVNQEVILSSDVKRMEKDIRARYLKMQQALPS-----KQKLRQQILDKLINDSLQLQVA 64
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
E +GL D+ +V I + GK+ + L+R+G + + + D L+ +
Sbjct: 65 ERMGLRLDNAQVDQTIQQILKKEGKNI----AQYQQELSRKGQSYQAFSDSVRNELTINE 120
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
+ M V + + H+ DP+
Sbjct: 121 IRQMQVRQRLNISEQEINLMVQRLNKDGKKNTQFHFIHILLKTDPN 166
>gi|301059205|ref|ZP_07200143.1| SurA N-terminal domain protein [delta proteobacterium NaphS2]
gi|300446695|gb|EFK10522.1| SurA N-terminal domain protein [delta proteobacterium NaphS2]
Length = 324
Score = 58.3 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/192 (13%), Positives = 60/192 (31%), Gaps = 11/192 (5%)
Query: 20 VLFVPFLIWGLSDALFSVSG----SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+ + FL G + L + + V V V Q GM +
Sbjct: 6 IFVLMFLFVGANAFLQGKANGEIYNRVVAIVNADVVTLYELNTRLTQMTGMAPDALKRK- 64
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
++ + + +K+L+ L+ + I+++ + V I + + +
Sbjct: 65 --SESQYLEMRRKVLEMLIEEKIAIEKIKEMKINVPQSEVDAAIETLKREND----MTQE 118
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
V+ L +G++ EY L R ++ V QA ++
Sbjct: 119 DLVAGLKAQGLSLDEYRKRLKTELERRRLINYEVRSKIIITDEEVQAYYDTHKDNYSTKG 178
Query: 196 VLNNRHVPAIAD 207
++ + +
Sbjct: 179 KVHLAMIFLKQE 190
Score = 44.8 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 41/130 (31%), Gaps = 4/130 (3%)
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ A + KA+Q++ + K G+NF + + + + +
Sbjct: 194 NREEARALRRKADQIIGKI-KAGENFGTLAAQFSNGPGAKDGGDLGVFNISELNSEMAAS 252
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIA 608
+ + + ++ V + G + K+ S L + D+ I
Sbjct: 253 IKDLSSGEIGTPIVRPNGIQIIKVVEKDEGGEKSFEKVKNAIRSTLYREKMNQAYDAWIK 312
Query: 609 YLKSQYSVTV 618
L+ + +
Sbjct: 313 DLREKSYTKI 322
>gi|251772783|gb|EES53345.1| probable peptidyl-prolyl cis-trans isomerase [Leptospirillum
ferrodiazotrophum]
Length = 289
Score = 58.3 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/253 (12%), Positives = 79/253 (31%), Gaps = 16/253 (6%)
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
A +E K + ++ + + L+D + E +P + +
Sbjct: 42 AKVGTREITKESLQSAIKDMNLPSSAPASVPSDVLNRLID-NTLITEEAEQEGLPNRPDI 100
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
++ + + + + + V + D+ +E+ + + + ++
Sbjct: 101 RKKLEDARNRILRQALIKTQVDDKVKVTDADVQGYFDKHRQEIKQPGYVEVRQLIIPDQ- 159
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
A+++V K+ R I K G + F P
Sbjct: 160 -KTADRIVSSLRKKKGFSRAIEKFKGGPVGKI--------FEGTVPPQFAKFFFGVPAGS 210
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ----MMNKDLLDSVIAYLKSQYS 615
V PI FK+ G + D+ + +TQ M +DL + L+++
Sbjct: 211 V-TGPIALKDGIHYFKIDKQVPGKLLSFDQAKAGITQFLTSRMKQDLYQKYLNSLRAKTK 269
Query: 616 VTVHDNLIQRYLD 628
+ ++ + +
Sbjct: 270 IEINQKSLGELMG 282
Score = 44.8 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 21/228 (9%), Positives = 70/228 (30%), Gaps = 17/228 (7%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ V VG +++ S ++ K + V S+ +L+ L+
Sbjct: 37 SDNVVAKVGTREITKESLQSAIKDM--NLPSSAPASVPSD----------VLNRLIDNTL 84
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ + E GL + + ++ + ++ + + Y D + +
Sbjct: 85 ITEEAEQEGL-PNRPDIRKKLEDARN-RILRQALIKTQVDDKVKVTDADVQGYFDKHRQE 142
Query: 159 LSRTDV---VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ + + + + ++ ++ ++ +R+++
Sbjct: 143 IKQPGYVEVRQLIIPDQKTADRIVSSLRKKKGFSRAIEKFKGGPVGKIFEGTVPPQFAKF 202
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
+F + P + F + ++ +S D+ +A +
Sbjct: 203 FFGVPAGSVTGPIALKDGIHYFKIDKQVPGKLLSFDQAKAGITQFLTS 250
>gi|116620640|ref|YP_822796.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Solibacter usitatus Ellin6076]
gi|116223802|gb|ABJ82511.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Solibacter usitatus Ellin6076]
Length = 342
Score = 58.3 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/211 (10%), Positives = 61/211 (28%), Gaps = 13/211 (6%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K VV L+ ++ V + S +++ + S
Sbjct: 1 MKRIFVVFAAGVAALTLASC-KHSPPANVAAEVDNHAITNSDLEKTYQSQYAQQS----E 55
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ ++ + LD +L ++++ + + E +GL A V EI++ ++
Sbjct: 56 GASEDQILTQKLD--LLSSMITQEIMLRKAEKLGLAAVDADVDAEISKMRA------PYT 107
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ F +L+ + + + L+ +V + + +
Sbjct: 108 KEEFEKQLSAQHMTLDDLKLKVRSKLTVDKLVNKEITSKITITDADVKNFYNNNKAAFNL 167
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ + + + N
Sbjct: 168 PEPAIHMAQILVTPFPDPNVRNLKNSKAQND 198
>gi|157690981|ref|YP_001485443.1| peptidylprolyl isomerase [Bacillus pumilus SAFR-032]
gi|157679739|gb|ABV60883.1| possible peptidylprolyl isomerase [Bacillus pumilus SAFR-032]
Length = 256
Score = 58.3 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/175 (12%), Positives = 51/175 (29%), Gaps = 2/175 (1%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
V +V + K+ + + ++ G + Q + E A++ + K+ +D LV
Sbjct: 64 DDQKVVATVNQDKITGNEYNSALSTIQGQLQQSGQDPTSKEGAKA--VKKQTIDALVGQE 121
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ Q E G++A V ++ + +F + S L + +
Sbjct: 122 LILQDAEKKGIKASDKEVDKQLKEEKKQFKDNAQFEEALKKSGLTMDQLKSDIADSIKYS 181
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
++ V A + + + +
Sbjct: 182 QYVDKEIKSASVSEKDVKAYYDQYADEMKKQKQKAPEYKEVKSQIKKQLESQEKQ 236
>gi|302871263|ref|YP_003839899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
obsidiansis OB47]
gi|302574122|gb|ADL41913.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
obsidiansis OB47]
Length = 335
Score = 58.3 bits (138), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/188 (10%), Positives = 52/188 (27%), Gaps = 4/188 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
++ + +I + + V + V V +K+ F +++ ++
Sbjct: 2 DKRTKIAIFFITAIVLLIIVIAVTPEMVKYVDENRAVAIVNGEKITKKEFAINYRSQINY 61
Query: 67 IS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ ++ + + +LD L+ Q + +
Sbjct: 62 YGLDKAFLSQKVGDKTYEQQIKENVLDGLIVRQIELQQARKRNITLTSTEKKAIDQQIEQ 121
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
+ S F L G E EY D K + + + S+ ++
Sbjct: 122 YKSDSQ--SGAEFKQYLQTIGATENEYKDQVIKSQIVSKLYDEVTKSQKASDAEIESYYN 179
Query: 185 FYFENRSV 192
+ +
Sbjct: 180 SHKSDFVE 187
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 31/242 (12%), Positives = 70/242 (28%), Gaps = 3/242 (1%)
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
Q + + L++ ++ ++ I+ D +
Sbjct: 75 DKTYEQQIKENVLDGLIVRQIELQQARKRNITLTSTEKKAIDQQIEQYKSDSQSGAEFKQ 134
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
+ I E K +SK + +I+ + EV
Sbjct: 135 YLQTIGATENEYKDQVIKSQIVSKLYDEVTKSQKASDAEIESYYNSHKSDFVEVKASHIL 194
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYD 547
E + + VL+ K G++F + + T + + K +
Sbjct: 195 FKVNDSKEEAAKKRKAEEVLQMIKSGQSFEKLAQKYSEDETTKQKSGDLGYFRKGQMVKE 254
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLTQMMNKDLLDSV 606
FS + + ++ + + KVT+ K + E KD+ S + + S+
Sbjct: 255 FEDAAFSLNIGEISSV-VKTSYGFHIIKVTDRKQLSLNEVKDEIKSTIESQKKDEYYQSL 313
Query: 607 IA 608
+
Sbjct: 314 VE 315
>gi|319654925|ref|ZP_08008999.1| hypothetical protein HMPREF1013_05621 [Bacillus sp. 2_A_57_CT2]
gi|317393350|gb|EFV74114.1| hypothetical protein HMPREF1013_05621 [Bacillus sp. 2_A_57_CT2]
Length = 288
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/192 (10%), Positives = 51/192 (26%), Gaps = 29/192 (15%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L ++ + FL++ V VG K+ +++ + + G
Sbjct: 10 IAGLVLLNLITLAFLLF------KGDGSGEAVAKVGGDKITRQEWMSEMETKYG------ 57
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN- 130
K L L+ +++ E G++ V E+ +G +
Sbjct: 58 ---------------KSTLSELIDQKVIEEAGEKYGVKVSEKAVDLELKMVKTMYGGNFT 102
Query: 131 -KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+ S D + ++ I E+ + ++
Sbjct: 103 DEMSEDKWRRQIKNNLILEELLTADVSVSEEEMKSYYEQNSSQFQVPDTYHISQIIVKTK 162
Query: 190 RSVDYIVLNNRH 201
+ +
Sbjct: 163 EEAEQTLKELDE 174
>gi|51894079|ref|YP_076770.1| putative post-translocation molecular chaperone [Symbiobacterium
thermophilum IAM 14863]
gi|51857768|dbj|BAD41926.1| putative post-translocation molecular chaperone [Symbiobacterium
thermophilum IAM 14863]
Length = 297
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/200 (11%), Positives = 58/200 (29%), Gaps = 34/200 (17%)
Query: 17 FLVVLFVPFLIWGLSDALFS--------VSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+ + ++ GL + + V +V +++ G
Sbjct: 11 IALAVVATLVVAGLGGYFVGSSLQRPGTGNDPAVVATVNGEQITRDEVHQKLMTYYGA-- 68
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
++D+++ +DQ G+ V E+ + +G
Sbjct: 69 -------------------AVVDDMILTRLVDQEAARAGVTVTDAEVEEEVEATKAAYGG 109
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
D FS L++ G++E ++ D + + T V+ + + + +
Sbjct: 110 DLYFS-----WALSQYGLSEAQFRDMLRRDMVATAVLRQQLQPDDATLKAYFDEMQSAEQ 164
Query: 189 NRSVDYIVLNNRHVPAIADP 208
R + + +
Sbjct: 165 TRKIKVRHILVDTEEKANEI 184
>gi|15594454|ref|NP_212242.1| basic membrane protein [Borrelia burgdorferi B31]
gi|195941846|ref|ZP_03087228.1| basic membrane protein [Borrelia burgdorferi 80a]
gi|216264206|ref|ZP_03436198.1| basic membrane protein [Borrelia burgdorferi 156a]
gi|218249766|ref|YP_002374636.1| basic membrane protein [Borrelia burgdorferi ZS7]
gi|221217448|ref|ZP_03588919.1| basic membrane protein [Borrelia burgdorferi 72a]
gi|223889066|ref|ZP_03623655.1| basic membrane protein [Borrelia burgdorferi 64b]
gi|224532923|ref|ZP_03673533.1| basic membrane protein [Borrelia burgdorferi WI91-23]
gi|224533973|ref|ZP_03674557.1| basic membrane protein [Borrelia burgdorferi CA-11.2a]
gi|225549343|ref|ZP_03770316.1| basic membrane protein [Borrelia burgdorferi 94a]
gi|225549885|ref|ZP_03770847.1| basic membrane protein [Borrelia burgdorferi 118a]
gi|226320700|ref|ZP_03796258.1| basic membrane protein [Borrelia burgdorferi 29805]
gi|226321981|ref|ZP_03797506.1| basic membrane protein [Borrelia burgdorferi Bol26]
gi|2687994|gb|AAC66497.1| basic membrane protein [Borrelia burgdorferi B31]
gi|215980679|gb|EEC21486.1| basic membrane protein [Borrelia burgdorferi 156a]
gi|218164954|gb|ACK75015.1| basic membrane protein [Borrelia burgdorferi ZS7]
gi|221192726|gb|EEE18942.1| basic membrane protein [Borrelia burgdorferi 72a]
gi|223885315|gb|EEF56416.1| basic membrane protein [Borrelia burgdorferi 64b]
gi|224512122|gb|EEF82513.1| basic membrane protein [Borrelia burgdorferi WI91-23]
gi|224512809|gb|EEF83176.1| basic membrane protein [Borrelia burgdorferi CA-11.2a]
gi|225369576|gb|EEG99027.1| basic membrane protein [Borrelia burgdorferi 118a]
gi|225370201|gb|EEG99641.1| basic membrane protein [Borrelia burgdorferi 94a]
gi|226232571|gb|EEH31325.1| basic membrane protein [Borrelia burgdorferi Bol26]
gi|226233916|gb|EEH32639.1| basic membrane protein [Borrelia burgdorferi 29805]
gi|312148208|gb|ADQ30867.1| basic membrane protein [Borrelia burgdorferi JD1]
gi|312149453|gb|ADQ29524.1| basic membrane protein [Borrelia burgdorferi N40]
Length = 336
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/203 (10%), Positives = 59/203 (29%), Gaps = 28/203 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGM 66
++++ + L + + S + ++ V + + + + F + +
Sbjct: 2 KSFLFWVILGTVGIS-----------SFAQNTPVAIINLYKNEIITKTGFDSKV----DI 46
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+ G + K++L L++ Q G++ V I
Sbjct: 47 FKKTQGRDLTDAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT----Q 96
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
F+ + + ++G N E + + LS +V + +
Sbjct: 97 FGLVNFTDEQIKQMIEKQGTNWGELLSSMKRSLSSQKLVLKQAQPKFSEIKTPSEKEIVE 156
Query: 187 FENRSVDYIVLNNRHVPAIADPS 209
+ + V + + S
Sbjct: 157 YYEANKTKFVNPDISRVSHIFFS 179
>gi|322508232|gb|ADX03686.1| Peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii
1656-2]
Length = 414
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/377 (11%), Positives = 103/377 (27%), Gaps = 49/377 (12%)
Query: 34 LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
F+ V V + S + + + V L ++LD L
Sbjct: 3 SFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHELQAQKKEVPP-----QQYLQFQVLDQL 57
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEI---------ARSPLFHGKDNKFSHDVFVSRLARE 144
+ + ++ G++ D + + F K + + + + +R
Sbjct: 58 ILRQAQLEQVKKYGIKPDEKSLNEAVLKVASQSGSKSLEAFQQKLDAIAPGTYENLRSRI 117
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL----------------DQAKRFYFE 188
+ +++SR + V S D +
Sbjct: 118 AEDLAINRLRQQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNV 177
Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
+ V + + + A+ S A + + ++ + + + + I
Sbjct: 178 AKEVRSQLAQSNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLI 237
Query: 249 SNDE----LQAEYEKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKKGKK 295
S + L+ K E+ ++ ++ D ++ LK G+
Sbjct: 238 SVRDGVHVLKLLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGED 297
Query: 296 FIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
F LA SLG + + D G+ + FG+ I
Sbjct: 298 FAILAATYSNDTGSARDGGSLGWVTPGMMVPE--FDKKMQEIPVGEISEPFQTQFGWHIL 355
Query: 352 HVSNIKPSFTVSFQEVK 368
V++ + + +
Sbjct: 356 QVTDKREKDMTHEYQER 372
Score = 41.8 bits (95), Expect = 0.34, Method: Composition-based stats.
Identities = 21/283 (7%), Positives = 80/283 (28%), Gaps = 5/283 (1%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I +F + + A E ++++
Sbjct: 128 QQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQ 187
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ ++ + + L +++ DG ++
Sbjct: 188 SNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLK 247
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + + + T + + E + + + + K G++F +
Sbjct: 248 LLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFAILAATYSN 307
Query: 527 SLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
+ + + + ++ PV + P + + + +VT+ + +
Sbjct: 308 DTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEI-SEPFQTQFGWHILQVTDKREKDMT 366
Query: 585 -QEKDKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +++ + +DS + +++ V + D + +
Sbjct: 367 HEYQERMARQILGERQFNTEIDSWLREVRANAYVEIKDPSLDK 409
>gi|225552054|ref|ZP_03772994.1| basic membrane protein [Borrelia sp. SV1]
gi|225371052|gb|EEH00482.1| basic membrane protein [Borrelia sp. SV1]
Length = 336
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/203 (10%), Positives = 59/203 (29%), Gaps = 28/203 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGM 66
++++ + L + + S + ++ V + + + + F + +
Sbjct: 2 KSFLFWVILGTVGIS-----------SFAQNTPVAIINLYKNEIITKTGFDSKV----DI 46
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+ G + K++L L++ Q G++ V I
Sbjct: 47 FKKTQGRDLTDAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT----Q 96
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
F+ + + ++G N E + + LS +V + +
Sbjct: 97 FGLVNFTDEQIKQMIEKQGTNWGELLSSMKRSLSSQKLVLKQAQPKFSEIKTPSEKEIIE 156
Query: 187 FENRSVDYIVLNNRHVPAIADPS 209
+ + V + + S
Sbjct: 157 YYEANKTKFVNPDISRVSHIFFS 179
>gi|328675683|gb|AEB28358.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase SurA) [Francisella cf. novicida 3523]
Length = 469
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 48/169 (28%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + L + F + + L ++ L +L+S + L
Sbjct: 52 NKTVAIVNSKPITSFELDQEVAK-LEAMQPNSTFNADP-----LQLKRQALQDLISQSVL 105
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 106 LQLAERNNITISNQQLDSAIQDIAAKNGV----SVESLKLNIEAAGMSFDSYKKRIRDQL 161
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + + +
Sbjct: 162 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKQFDREMAPVKLYTLKNLII 210
>gi|225874673|ref|YP_002756132.1| peptidylprolyl cis-trans isomerase SurA, putative [Acidobacterium
capsulatum ATCC 51196]
gi|225793602|gb|ACO33692.1| peptidylprolyl cis-trans isomerase SurA, putative [Acidobacterium
capsulatum ATCC 51196]
Length = 588
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 46/491 (9%), Positives = 120/491 (24%), Gaps = 35/491 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V Q + S + + + Q+ N +A K +L NL+ L
Sbjct: 62 EQIVARVDDQVIDTSDYERAEQDLKQQAQQQ-----NMSQAELDREKKDLLRNLIDQQLL 116
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ +G+ + + R +++ S + +G++ +++ +
Sbjct: 117 LAKGKQLGITGED----QLVERLDAIRKQNHLDSMTALQQAVESQGLSWQDFKQQIRNNI 172
Query: 160 SRTDVVGMFVG-GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
V+ V +R S + + + + V + + +P +A +
Sbjct: 173 ITQTVIRQKVAPTIRISPDEIQKYYDQHKKEFDRPEEVRLSEILIPTPNPDDAAQVAEAK 232
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL-------------QAEYEKNKEKYF 265
K D A + + +L A + K ++
Sbjct: 233 KKADGIEAQLKAGGDFAKLAKSDSTGPTAPQGGDLGDFQKGQLAPELENATFPLKKGQFT 292
Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
P ++ D + + + I+ A K + + +
Sbjct: 293 EPIQTKQGWIILEVTHHQDAGLAPMNQVETQIENAVGYNKMQPALRAYLTKLRNESYIDI 352
Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
+ I+ ++ + + + K E
Sbjct: 353 RPGYTDAGATPNEMKPIYSAYVPPSGKKKKAHMTRVRYDAYHRGRHYRVKKKAKTEEASA 412
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + L + ++ + G+ + A+ + + G
Sbjct: 413 QTSTKESRKLRRERRKERAGIQKPGKKEKI----RFGQAPRENLPPALGQQPEGADTGNG 468
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ A + + + E V + +
Sbjct: 469 AEANADATQPAATGNAA--------KKRFGSKSNEHRAKKVDDHHPAAVVGTAAEATMKE 520
Query: 506 LVLEYSKEGKN 516
EG
Sbjct: 521 QQSSLGLEGNT 531
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 22/210 (10%), Positives = 68/210 (32%), Gaps = 7/210 (3%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
L + + V+ + ++ +K+Q+ + + K + +
Sbjct: 144 LDSMTALQQAVESQGLSWQDFKQQIRNNIITQTVIRQKVAPTIRISPDEIQKYYDQHKKE 203
Query: 475 RDRKLEEVLTDVKKDWKT--VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
DR E L+++ + K + K G +F + K+
Sbjct: 204 FDRPEEVRLSEILIPTPNPDDAAQVAEAKKKADGIEAQLKAGGDFAKLAKSDSTGPTAPQ 263
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
+ D + + + F PI+ +++ +VT+ + + ++ +
Sbjct: 264 GGDLGDFQKGQLAPELENATFPLKKGQF-TEPIQTKQGWIILEVTHHQDAGLAPMNQVET 322
Query: 593 YLTQMMN----KDLLDSVIAYLKSQYSVTV 618
+ + + L + + L+++ + +
Sbjct: 323 QIENAVGYNKMQPALRAYLTKLRNESYIDI 352
>gi|260654850|ref|ZP_05860338.1| putative fibrous sheath CABYR-binding protein [Jonquetella anthropi
E3_33 E1]
gi|260630565|gb|EEX48759.1| putative fibrous sheath CABYR-binding protein [Jonquetella anthropi
E3_33 E1]
Length = 570
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/261 (10%), Positives = 81/261 (31%), Gaps = 16/261 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPF-LIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFIN 58
L +R + W+ FLV + L++G+ D V S+ ++ S
Sbjct: 9 LTSLRTQIK-WILVAFLVAFGLSIPLMYGVGRHDEKNKGVRDHVVASIDGREYKLSELHK 67
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ + + + + ++ LD+L + LD+ I++ G+E +V +
Sbjct: 68 AMQGFAER------NNIKLTQENLPAVYQQTLDSLATQIALDKAIKERGIEPTEAQVNEQ 121
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ + + + F++ L G + ++ + L+ ++ +
Sbjct: 122 LK-----QLEVQYVTKEAFLANLRATGSSLEQVKANLAHDLAVRQLLTQESESATVDDQQ 176
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD-NYRAPEYKRISYILF 237
+ + + + + + K +
Sbjct: 177 VKSLYDLFVTMKQPMVYRPSGVEGHHAEFRTKEAAEAFLAAVKAGEDWKTAADKAGDNKI 236
Query: 238 DVHEKEKKIEISNDELQAEYE 258
+ + +S+ +++ +
Sbjct: 237 GSTDGKMTSFVSDTDVKERFP 257
Score = 41.0 bits (93), Expect = 0.58, Method: Composition-based stats.
Identities = 26/253 (10%), Positives = 65/253 (25%), Gaps = 13/253 (5%)
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
+ Q + A++ + + ++E ++ ++ + +
Sbjct: 86 PAVYQQTLDSLATQIALDKAIKERGIEPTEAQVNEQLKQLEVQYVTKEAFLANLRATGSS 145
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
L S + + P R V+
Sbjct: 146 LEQVKANLAHDLAVRQLLTQESESATVDDQQVKSLYDLFVTMKQPMVYRPSG-----VEG 200
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
+T E A + L K G++++ G + + + + +
Sbjct: 201 HHAEFRTKE-----AAEAFLAAVKAGEDWKTAADKAGDNKIGSTDGKMTSFVSDTDVKER 255
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKV--TNSKVGPVQEKDKFISYLTQMMNKDLLDS- 605
+ + I +G V +V T K +E + L + +
Sbjct: 256 FPFLGTMKDGDYTLQQIADGDFLVFRRVGATAEKTLTFEEAQPQLKALALNQARMVKQQE 315
Query: 606 VIAYLKSQYSVTV 618
+ LK + V +
Sbjct: 316 FLTALKDKVKVEI 328
>gi|312142755|ref|YP_003994201.1| peptidil-prolyl cis-trans isomerase [Halanaerobium sp.
'sapolanicus']
gi|311903406|gb|ADQ13847.1| peptidil-prolyl cis-trans isomerase [Halanaerobium sp.
'sapolanicus']
Length = 251
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/199 (14%), Positives = 61/199 (30%), Gaps = 8/199 (4%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWK-----QELGMISQKIGFVVNSERARSVG 84
+ ++ G + V V +++ QE+ I Q++ V+ + +
Sbjct: 33 VDSSIEEDIGGNIVAEVNGEEITDQELAQQANVNQLLQEIAQIDQQLAQVLVDSESGNEV 92
Query: 85 LDK---KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
LD+ LD L+ L Q E++G+E V + N S + F++ L
Sbjct: 93 LDEFQKLKLDALIDNVLLSQQAEELGIELTDEEVDEIYQAQKESIKQQNDLSEEDFLAVL 152
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
+G +E V + + + ++ +E +
Sbjct: 153 ENQGFESEEEYKQAFADNPSLKVNKLIEQEVLGDFEISEEELLEEYEANEEQFTQGGETI 212
Query: 202 VPAIADPSNAVLTQWFEKY 220
P + +
Sbjct: 213 PFEQIKPQLEQMMMQQRQN 231
>gi|262372454|ref|ZP_06065733.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
gi|262312479|gb|EEY93564.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter junii SH205]
Length = 442
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/405 (10%), Positives = 101/405 (24%), Gaps = 56/405 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
+ + L L S F+ V V + S +
Sbjct: 9 NSIQHIFRATVLAALISS------SMHSFAQPTDEVVAIVDNSVILKSDLEQGIAETEHQ 62
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI------- 119
+ + V + + ++LD L+ + ++ G++AD + +
Sbjct: 63 LKAQNKTVPPQQYLQM-----QVLDQLIIRQAQLEQVKRYGIKADEKSLNAAVLKVANQS 117
Query: 120 --ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT--------------- 162
F K + + + + R + +++SR
Sbjct: 118 GATTLEAFQQKLDAIAPGTYENLRNRIAEDLAIGRLRQQQVMSRIKISDLDVENFLNSPE 177
Query: 163 ---------DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
V+ M + G + + S D ++++ + A +
Sbjct: 178 GQAALGTQAHVIHMRISGDNAAEAQKVALEVKNALTNSDDPKAISSKLSTSSVKVDGADM 237
Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
A + + L+ + K + R +
Sbjct: 238 GFRSLSEIPTELAARITPLKIGQTTELINVRDGIHVLKLLERKQNDQKALVDQYQTRHIL 297
Query: 274 QL------VFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDV 323
+ ++ D + K G+ F LA SLG S +
Sbjct: 298 IQPSEVVSLDRAKQMIDSLYNRAKAGEDFATLAATYSNDTGSARDGGSLGWVSPGVMV-- 355
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
+ + G + FG+ I V + + + +
Sbjct: 356 AEFEQTMKNTPVGQISKPFQTQFGWHILQVMDTRQQDMTKEVQER 400
Score = 38.3 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 16/211 (7%), Positives = 60/211 (28%), Gaps = 3/211 (1%)
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D ++ L + + DG ++ ++ +
Sbjct: 226 STSSVKVDGADMGFRSLSEIPTELAARITPLKIGQTTELINVRDGIHVLKLLERKQNDQK 285
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+++ T + + + + + + +K G++F + +
Sbjct: 286 ALVDQYQTRHILIQPSEVVSLDRAKQMIDSLYNRAKAGEDFATLAATYSNDTGSARDGGS 345
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYL 594
+ + Q P + + + +V +++ + +++ +
Sbjct: 346 LGWVSPGVMVAEFEQTMKNTPVGQISKPFQTQFGWHILQVMDTRQQDMTKEVQERMARQI 405
Query: 595 TQMMNKD-LLDSVIAYLKSQYSVTVHDNLIQ 624
D +D+ + L++ V + D +
Sbjct: 406 LGERQFDTEVDTWMRELRANAYVEIKDVSLD 436
>gi|296135908|ref|YP_003643150.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
K12]
gi|295796030|gb|ADG30820.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
K12]
Length = 262
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/176 (8%), Positives = 52/176 (29%)
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
V + ++ + +Y+ + + V + ++K
Sbjct: 86 AVQDEIRIARQNILIRALFNAYLQKHPITEAQIKAEYDKFVKSFGSTEYKAQHILVPSEK 145
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
+A ++ + K K K + N + + + + +
Sbjct: 146 EAQDIIAQLKKGAKFSELAKKYSKDTGSAANGGDLGWSTPNNYVPPFAKALEALKPGQYT 205
Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P+++ + V K+ ++ D+ + + + + L+++ +T
Sbjct: 206 QTPVQSQFGWHVIKLDATRPAKAPTLDQLKPQIQAELQRQEVTKYQDELRAKAKIT 261
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ +V + +P S ++++ G V L + + + L+S +
Sbjct: 24 QNIATVNGKPIPQS----LADSVANSMAKQQGQAVTP------QLKEMVKNELISREVMV 73
Query: 101 QFIEDIGLEADHGRVWGEIA 120
Q + +GL+ V EI
Sbjct: 74 QEADKLGLD-KETAVQDEIR 92
>gi|222528654|ref|YP_002572536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
bescii DSM 6725]
gi|222455501|gb|ACM59763.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
bescii DSM 6725]
Length = 335
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/178 (11%), Positives = 55/178 (30%), Gaps = 5/178 (2%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
RT + + + + ++ G+ + + V + V V +K+ F +++ ++
Sbjct: 3 KRTKIVLFSIAAVVLLIILIGVTPEIVKYVDENRAVAIVNGEKITKKEFAINYRSQINYY 62
Query: 68 S--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ ++ + + +LD L+ Q + + +
Sbjct: 63 GIDKTFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQARKRNITLTSAEKKAIDQQIEQY 122
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
S F L G E EY D K + + + ++ ++
Sbjct: 123 KSDSQ--SGAEFRQYLQTIGATENEYKDQVIKSKIVSKLYDEITKNQKATDAEVENYY 178
Score = 44.1 bits (101), Expect = 0.074, Method: Composition-based stats.
Identities = 32/242 (13%), Positives = 72/242 (29%), Gaps = 3/242 (1%)
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
Q + + L++ ++ ++ I+ D +
Sbjct: 75 DKTYEQQIKENVLDGLIIRQIELQQARKRNITLTSAEKKAIDQQIEQYKSDSQSGAEFRQ 134
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
+ I E K +SK + + +++ + EV
Sbjct: 135 YLQTIGATENEYKDQVIKSKIVSKLYDEITKNQKATDAEVENYYSSHKSDFVEVKASHIL 194
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYD 547
E K + +L+ K+G+NF + + T + + K +
Sbjct: 195 FKVNDSKEEAAKKKKAEEILQMIKDGQNFEKLAQKYSEDENTKQKGGDLGYFRKGQMVKE 254
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLTQMMNKDLLDSV 606
FS + + ++ Y + KVT+ K + E KD+ S + + S+
Sbjct: 255 FEDAAFSLNIGEISNI-VKTSYGYHIIKVTDKKQLSLNEVKDEIKSTIESQKKDEYYQSL 313
Query: 607 IA 608
+
Sbjct: 314 LE 315
>gi|192288942|ref|YP_001989547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris TIE-1]
gi|192282691|gb|ACE99071.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris TIE-1]
Length = 316
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 47/135 (34%), Gaps = 6/135 (4%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+V V+T +E + A +L K+G +F ++ K ++ +
Sbjct: 149 EQEVHARHILVETEDEAKAVAEEL-----KKGADFAELAKKKSKDPGASDGGDLGFFTKD 203
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
+ + F+ + PI+ + + KV + D+ + + Q + +
Sbjct: 204 QMVPEFSAAAFALEPGKI-SDPIKTQFGWHIIKVEEKRNRKPPSFDQVKAQIEQYVTRKA 262
Query: 603 LDSVIAYLKSQYSVT 617
++ L+ +
Sbjct: 263 QSDYVSKLRQAAKIE 277
>gi|257092906|ref|YP_003166547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257045430|gb|ACV34618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 336
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 49/142 (34%), Gaps = 2/142 (1%)
Query: 478 KLEEVLTDVK-KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ E + + ++K E ++A ++ + K+ F + +
Sbjct: 136 EYERIKATITGSEYKARHILVEKEAEATAIIAKLKKDPGAFAKLAMEKSKDAGSKASGGE 195
Query: 537 MD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
+ + + + V + P++ Y V ++ +SK ++ +L
Sbjct: 196 LGWFDLSRMVPEFAAAVSKLEKGAITQEPVKTPYGYHVIQLEDSKPIEAPPFEEVKPHLA 255
Query: 596 QMMNKDLLDSVIAYLKSQYSVT 617
Q + + L + LK++ +
Sbjct: 256 QQVQQQNLKKHLDDLKAKAKIE 277
Score = 40.6 bits (92), Expect = 0.73, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 6/145 (4%)
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK-KFIQLAEEQGKSL-- 307
DE+ + + + ++ + EA LKK F +LA E+ K
Sbjct: 130 DEVLKAEYERIKATITGSEYKARHILVEKEAEATAIIAKLKKDPGAFAKLAMEKSKDAGS 189
Query: 308 --SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
S LG F + A ++ L K + +GY + + + KP F+
Sbjct: 190 KASGGELGWFDLSRMV-PEFAAAVSKLEKGAITQEPVKTPYGYHVIQLEDSKPIEAPPFE 248
Query: 366 EVKKDIANQMRITKASEKVKEDYKR 390
EVK +A Q++ + + + +
Sbjct: 249 EVKPHLAQQVQQQNLKKHLDDLKAK 273
Score = 39.1 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE 104
+V + + MI ++ G +A S + I+D L+ + +
Sbjct: 44 TVNGVVISKK--------RVDMIVKQAGGN---GQADSPEARQGIVDKLIMQTLVAEEAV 92
Query: 105 DIGLEADHGRVWGE 118
GL+ +
Sbjct: 93 KKGLDKSPEVIEQI 106
>gi|20808476|ref|NP_623647.1| parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
tengcongensis MB4]
gi|20517095|gb|AAM25251.1| Parvulin-like peptidyl-prolyl isomerase [Thermoanaerobacter
tengcongensis MB4]
Length = 264
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/199 (9%), Positives = 47/199 (23%), Gaps = 19/199 (9%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI L+++ F + ++ S GS + SV + + ++
Sbjct: 3 KIVLLLILPVFAL-----SILSGCGSKQIASVHGIPITQAELEREKAFLKNDFAKMSDEE 57
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ K L+NL + ++ + G+ + K +
Sbjct: 58 LT----------KTALENLKAKKAVEYEAQKEGIAVTDEELNKAWQNIK----DKTKLTK 103
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ L + + K D + + +
Sbjct: 104 EDLKDILLSDKLFNKYTKDITVNPEEVEQFYETHKDYYTTVKVYEISVRDKDTADMVYQK 163
Query: 195 IVLNNRHVPAIADPSNAVL 213
+ S +
Sbjct: 164 LKSGEDFSKLFEQYSIDRI 182
>gi|312623037|ref|YP_004024650.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203504|gb|ADQ46831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 335
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 52/179 (29%), Gaps = 4/179 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
V V+ + LI + + V + V V +K+ F +++ ++
Sbjct: 2 DKRTKIVLFSIAAVVLLIILIAVTPEIVKYVDENRAVAIVNGEKITKKEFAINYRSQINY 61
Query: 67 IS--QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ ++ + + +LD L+ Q + + +
Sbjct: 62 YGLDKTFLSQKVGDKTYEQQIKENVLDGLIIRQIELQQAKRKNIALTSAEKKAIDQQIEQ 121
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ S F L G E EY D K + + + ++ ++
Sbjct: 122 YKSDSQ--SGAEFKQYLQTIGATENEYKDQVIKSQIVSKLYDEITKNQKATDAEIENYY 178
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 34/242 (14%), Positives = 72/242 (29%), Gaps = 3/242 (1%)
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
Q + + L++ ++ ++ I+ D +
Sbjct: 75 DKTYEQQIKENVLDGLIIRQIELQQAKRKNIALTSAEKKAIDQQIEQYKSDSQSGAEFKQ 134
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
+ I E K +SK + + +I+ + EV
Sbjct: 135 YLQTIGATENEYKDQVIKSQIVSKLYDEITKNQKATDAEIENYYSSHKSDFVEVKASHIL 194
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYD 547
E K + VL+ K+G+NF + + T + + K +
Sbjct: 195 FKVNDSKEEATKKKKAEEVLQMIKDGQNFEKLAQKYSEDETTKQKGGDLGYFRKGQMVKE 254
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLTQMMNKDLLDSV 606
FS + + ++ Y + KVT+ K + E KD+ S + + S+
Sbjct: 255 FEDAAFSLNIGEISNI-VKTSYGYHIIKVTDKKQLSLNEVKDEIKSTIESQKKDEYYQSL 313
Query: 607 IA 608
+
Sbjct: 314 LE 315
>gi|302877391|ref|YP_003845955.1| SurA domain [Gallionella capsiferriformans ES-2]
gi|302580180|gb|ADL54191.1| SurA domain [Gallionella capsiferriformans ES-2]
Length = 440
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/157 (12%), Positives = 56/157 (35%), Gaps = 8/157 (5%)
Query: 51 VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
+ + + + ++ G + L+ ++L+ +++ QF ++ G+
Sbjct: 49 ITRLELNERLRMVVSQLKKQ-GTPLPEGAV----LETQVLERMIAEMLQAQFAKENGVRV 103
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
D ++ I R ++N S F+++L +G+N K++ + + T + V
Sbjct: 104 DDTQLDMAITRIAQ---QNNFPSLVEFMAKLESDGVNVKKFREEIRAEIVSTRLREREVE 160
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ +D + H+ +
Sbjct: 161 SKLVISDTEVDNYLSNKSKMGLDNDEYHLAHILVVVP 197
>gi|261364046|ref|ZP_05976929.1| SurA/PPIASE domain protein [Neisseria mucosa ATCC 25996]
gi|288568080|gb|EFC89640.1| SurA/PPIASE domain protein [Neisseria mucosa ATCC 25996]
Length = 328
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/285 (7%), Positives = 68/285 (23%), Gaps = 10/285 (3%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + ++ I + + L +++L L++ +
Sbjct: 51 SDGIAAIADNEVITRRQLAQAVERARRTIPK-------GTQIGDNELREQVLAQLINQSL 103
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++AD+ + IA +P ++ S +A + +
Sbjct: 104 IVQAGKRKNIQADNAEIEAVIAANPSLKTPSASIRREIADSIIAEKVRQQAVMQHSRVSD 163
Query: 159 LSRTDVVGM-FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ G+ + D I +
Sbjct: 164 AEVARAIEQAKQQGIALPEGEPLRQYNAQHILIKADNENAAAGAESTIRKIYAQARSG-- 221
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ R + ++ + + E K + + ++
Sbjct: 222 ADFAGLARQYSQDGSASSGGNLGWFADGMMVPPFEEAVHKLKPGQVSPPVRTQFGWHIIK 281
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
N + + L+ ++ + L + D
Sbjct: 282 LNDVRDAGTPEERQHNTIRQYLSRQKAEQAEINLLRELHEGAHID 326
>gi|83591735|ref|YP_425487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum
rubrum ATCC 11170]
gi|83574649|gb|ABC21200.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodospirillum
rubrum ATCC 11170]
Length = 308
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 48/161 (29%), Gaps = 3/161 (1%)
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS---SKANQLVLEYSKEGKNF 517
G+YM + E + K + + A + A + ++ + G +F
Sbjct: 111 GAYMQKVVDEDVTDAAVKARYNEMKAEFKPEKEVHARHILLETEDAAKDAIKKIEGGADF 170
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
+ L + F+ V V P + + V K+
Sbjct: 171 TKLASELSTGPSAQTGGDLGFFTKDRMVAPFAEAAFAMKVGEVSKAPTKTEFGWHVIKIE 230
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ ++ S++ + ++ +A LK V +
Sbjct: 231 EVRDTTFPPVEEMESHIRDELANAAVEKNVAGLKESAKVKL 271
Score = 41.0 bits (93), Expect = 0.65, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 12/106 (11%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
VL +P + + V V V S+ + + Q G +
Sbjct: 11 LAGVLALPL----FAGPALAADPDPVVAVVNGADVHLSAVQERFAELQASQPQLGGLPLA 66
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+ +++L+++V + + GL A+ V + R
Sbjct: 67 M-------VYEQLLNSVVEAELVTEAGRKAGL-ANDPEVKHRLDRL 104
>gi|315607432|ref|ZP_07882428.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
gi|315250864|gb|EFU30857.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae ATCC 33574]
Length = 474
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 47/345 (13%), Positives = 103/345 (29%), Gaps = 42/345 (12%)
Query: 287 FQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ +LKKG F LA ++ +++ L + + + + KKG+ +
Sbjct: 157 YNALKKGADFADLARRLSDDKSSAVNGGQLPWIERNQLVKA--YEDVAYALKKGEISKPF 214
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
+GY + + + +P F + I + RL+E +G +
Sbjct: 215 LSEYGYHVVKLDDKQP----FFPYDSVKTSIYQFIESRGLRDAIVTDRLQEEAKVGNTTP 270
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
E K + + Y + LL K +
Sbjct: 271 EQLLDAKTEELTAKD--------DALKYLIKEYHDGLLLYEISNRTVWDKAAKDEAGLSA 322
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
Y K+ R A V + ++ ++ S +GK F +
Sbjct: 323 YFAKNKKKYRWEEPRFKG--------------IAYHVKTASDVDAVKRSIKGKPFAEWAD 368
Query: 523 NLGASLLTTNQINRMDNENKFF---GYDGI-SQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
L + + + R+ E F + +VF PV + ++
Sbjct: 369 ILRTTFNN-DSVLRIRVEKGIFKKGDNAVVDKEVFKVPVTVKPVEGYPIDATFG-----K 422
Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
++ + + L + L+ +Y+V ++ ++
Sbjct: 423 VLKNKPEDYQDVRALVVADYQDALEKQWVESLRKKYTVVINKEVL 467
>gi|149179628|ref|ZP_01858140.1| peptidyl-prolyl isomerase [Planctomyces maris DSM 8797]
gi|148841534|gb|EDL55985.1| peptidyl-prolyl isomerase [Planctomyces maris DSM 8797]
Length = 217
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 10/127 (7%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + + + +E + + ++L NL+ Q
Sbjct: 59 AVVNGYVITGTDLDQRLALLVNANQ----TEIPAEELQR--VRAQVLRNLIDETLQIQAA 112
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
E + V AR + + + + LA G + L+
Sbjct: 113 EAEEIVISDAEVEQTFARVAAQNNQR----PEDMENYLASIGSSSASLKRQIRGELAWQR 168
Query: 164 VVGMFVG 170
++ V
Sbjct: 169 LLRQKVS 175
>gi|111114930|ref|YP_709548.1| basic membrane protein [Borrelia afzelii PKo]
gi|216263862|ref|ZP_03435856.1| basic membrane protein [Borrelia afzelii ACA-1]
gi|110890204|gb|ABH01372.1| basic membrane protein [Borrelia afzelii PKo]
gi|215979906|gb|EEC20728.1| basic membrane protein [Borrelia afzelii ACA-1]
Length = 336
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/199 (12%), Positives = 61/199 (30%), Gaps = 23/199 (11%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
K FL ++ + + + S + ++ V + + + +SF + + +
Sbjct: 1 MKSFLFLVILGTV------GINSFAQNTPVAIINLYKNEIITKTSFDSKV----DIFKKT 50
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
G + + K++L L++ Q G++ V I
Sbjct: 51 QGRDLTAAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT----QFGLV 100
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
F+ + + ++G N E + + LS +V + + +
Sbjct: 101 NFTDEQIKQMIEKQGTNWGELLSSMKRSLSSQKLVLKQAQPRFSEVKTPSEKEIIEYYEA 160
Query: 191 SVDYIVLNNRHVPAIADPS 209
+ V + + S
Sbjct: 161 NKTRFVNPDISRVSHVFFS 179
>gi|306820710|ref|ZP_07454338.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551320|gb|EFM39283.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 382
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/258 (12%), Positives = 84/258 (32%), Gaps = 5/258 (1%)
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
++ ++ +K+ E + +S+D ++ + P + D K
Sbjct: 83 ENFKTELLENMIEDKIIEKEVKNLSLTVDDSSVDANVKQYTQILESAPDIKKYFADNKLD 142
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
+ L + + D K+ +Y E + R ++ V
Sbjct: 143 TNFIKAMSTKDLVKAALEKDFTDKNQVTQAEIDAYYEKNKAEFSNEQIRASHILIKTVNY 202
Query: 489 DWKT--VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
D E + +++ + G++F ++ K G +
Sbjct: 203 DLSDMPKDKVEAAKKQIDEIYEKAI-AGEDFAELAKQYGQDGTKDTGGDLGYFTRDRMVK 261
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ F+ + + P++ Y + K+ + K V + Y+ ++ K+ +
Sbjct: 262 EFSDAAFALNIGEI-SKPVKTQWGYHIIKLVDKKSENVD-VAQAKEYVKSLLQKNKFNDY 319
Query: 607 IAYLKSQYSVTVHDNLIQ 624
I LK + +T + L++
Sbjct: 320 IKELKEKAKITKDEELLK 337
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/210 (12%), Positives = 58/210 (27%), Gaps = 20/210 (9%)
Query: 17 FLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
L V + F L+ G SD G T+ S+ QK+ + ++ +
Sbjct: 7 ILGVGLLSFTLLVGCSD-----KGDKTLASIDNQKITYGDYLKEMAMYKLQVDTTFASNP 61
Query: 76 N--------------SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
E ++L+N++ +++ ++++ L D V + +
Sbjct: 62 KFWEEKVPADQSVSGKETTVLENFKTELLENMIEDKIIEKEVKNLSLTVDDSSVDANVKQ 121
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
++L I D L + V
Sbjct: 122 YTQILESAPDIKKYFADNKLDTNFIKAMSTKDLVKAALEKDFTDKNQVTQAEIDAYYEKN 181
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
F E +I++ + P +
Sbjct: 182 KAEFSNEQIRASHILIKTVNYDLSDMPKDK 211
>gi|288924570|ref|ZP_06418507.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17]
gi|288338357|gb|EFC76706.1| peptidyl-prolyl cis-trans isomerase [Prevotella buccae D17]
Length = 474
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/345 (13%), Positives = 103/345 (29%), Gaps = 42/345 (12%)
Query: 287 FQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ +LKKG F LA ++ +++ L + + + + KKG+ +
Sbjct: 157 YNALKKGADFADLARRLSDDKSSAVNGGQLPWIERNQLVKA--YEDVAYALKKGEISKPF 214
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
+GY I + + +P F + I + RL+E +G +
Sbjct: 215 LSEYGYHIVKLDDKQP----FFPYDSVKTSIYQFIESRGLRDAIVTDRLQEEAKVGNTTP 270
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
E K + + Y + LL K +
Sbjct: 271 EQLLDAKTEELTAKD--------DALKYLIKEYHDGLLLYEISNRTVWDKAAKDEAGLSA 322
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
Y K+ R A V + ++ ++ S +GK F +
Sbjct: 323 YFAKNKKKYRWEEPRFKG--------------IAYHVKTASDVDAVKRSIKGKPFAEWAD 368
Query: 523 NLGASLLTTNQINRMDNENKFF---GYDGI-SQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
L + + + R+ E F + +VF PV + ++
Sbjct: 369 ILRTTFNN-DSVLRIRVEKGIFKKGDNAVVDKEVFKVPVTVKPVEGYPIDATFG-----K 422
Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
++ + + L + L+ +Y+V ++ ++
Sbjct: 423 VLKNKPEDYQDVRALVVADYQDALEKQWVESLRKKYTVVINKEVL 467
>gi|322437244|ref|YP_004219456.1| SurA domain protein [Acidobacterium sp. MP5ACTX9]
gi|321164971|gb|ADW70676.1| SurA domain protein [Acidobacterium sp. MP5ACTX9]
Length = 377
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/164 (10%), Positives = 51/164 (31%), Gaps = 11/164 (6%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + +V + + + +LG Q ++E+A S L +L L+
Sbjct: 54 SADVMATVNGHAIMRADLDKVYNLQLGEAQQ---SQPSAEQADSQRLG--LLKQLIDEEI 108
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + L A + V ++A ++ + F L + + +
Sbjct: 109 VQQRATKMNLTATNEEVDAKLAEMKA------PYTEEQFDGLLRERHTSVDDIKRDLRRS 162
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
L+ ++ + + + ++ + +
Sbjct: 163 LTMNKLLNKEINSKVTVSDADITSYFNQHKSEFNNIETQYHIAR 206
>gi|91794237|ref|YP_563888.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
denitrificans OS217]
gi|121956465|sp|Q12K61|SURA_SHEDO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|91716239|gb|ABE56165.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
denitrificans OS217]
Length = 434
Score = 58.3 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 56/156 (35%), Gaps = 12/156 (7%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI +L + ++ + V + + S N ++
Sbjct: 6 KIVTALLALAMSQTVMAAPVAL---DRVSVQINDGIILESEIGNMLATVRANANK-SNQT 61
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ SE+A L ++++ L+ Q E IGL+ ++ I KD K +
Sbjct: 62 LPSEQA----LRTQVIERLILTRLQLQMAERIGLQIGDLQLDQTIESI----AKDQKLTV 113
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+L +G++ +Y + + ++ ++ + V
Sbjct: 114 SQLQQQLENDGLSFSQYREQLREEITLGEIQRIQVQ 149
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 16/203 (7%), Positives = 63/203 (31%), Gaps = 4/203 (1%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD- 485
G + LF + + +++ ++ + +++EEV +
Sbjct: 231 GIWDYMNINEMPTLFAEVVNGAKVGDIIGPIKSGSGFHIIKVMDARGLQTKEVEEVKSRH 290
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
+ + + E + + +F ++ + + + + +
Sbjct: 291 ILLKPSPILSEERAKAMLVNFQKQILSGEADFAELARQYSEDPGSAAKGGELGWSSPDVY 350
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDL 602
+Q + E P + + ++ + + E+ ++ + + +
Sbjct: 351 VPEFAQTLNSLKENEMSEPFRTTHGWHLTQLMDKRKTDATEQFNSNRAHQLIFRRKFNEE 410
Query: 603 LDSVIAYLKSQYSVTVHDNLIQR 625
L + + ++S + V + + R
Sbjct: 411 LQAWLDEMRSDAYIEVFEPEVNR 433
>gi|117925616|ref|YP_866233.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
MC-1]
gi|117609372|gb|ABK44827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Magnetococcus sp.
MC-1]
Length = 442
Score = 57.9 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 12/160 (7%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ WV + +V + + + V V + + S + + ++ S+
Sbjct: 5 KRWVRWVIMVSMILLSTLT--KPVEAGVPLDGIAAVVEGEIILESEIADQLRAQVMKFSR 62
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
E+ L +++LD V Q + +G+ V G + R +
Sbjct: 63 ------AGEQVDVALLRRRVLDGAVMRVLRAQKAKQLGINLKDADVDGAVQRM----AQH 112
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
N S + F LAREG+ Y+ L ++ +
Sbjct: 113 NNVSVEQFKMMLAREGVGFDSYLSSIRDQLYVQQIIRQVI 152
>gi|300813640|ref|ZP_07093965.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300512246|gb|EFK39421.1| conserved domain protein [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 167
Score = 57.9 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 35/137 (25%), Gaps = 19/137 (13%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + A + ++ V G V ++P F S+
Sbjct: 2 FLKKFTAAVLSGLMLVSLSACGKG-------PEGVAAKVNDVEIPMEDFYKSYAIRRNQY 54
Query: 68 SQKIGFVVN------------SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
G + S+ L + +L + Q ++ + +
Sbjct: 55 VANAGGDESVLEGPIDPTGKQSKLTVDQYLKDITIKDLTETEIIKQDAAANNIKVEDSEI 114
Query: 116 WGEIARSPLFHGKDNKF 132
+ + G D +F
Sbjct: 115 QKILDQYKAQLGGDEQF 131
>gi|194017414|ref|ZP_03056025.1| putative peptidylprolyl isomerase [Bacillus pumilus ATCC 7061]
gi|194010686|gb|EDW20257.1| putative peptidylprolyl isomerase [Bacillus pumilus ATCC 7061]
Length = 257
Score = 57.9 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/175 (12%), Positives = 53/175 (30%), Gaps = 2/175 (1%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
V +V + K+ + + ++ G + Q + E A++ + K+ +D LV
Sbjct: 65 DDQKVVATVNQDKITGNEYNSALSTIQGQLQQSGQDPTSKEGAKA--VKKQTIDALVGQE 122
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ Q E G++A +V ++ + +F + S L + +
Sbjct: 123 LILQDAEKKGIKASDKQVDKQLKEEKKQFKDNAQFEEALKKSGLTMDQLKSDIADSIKYS 182
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
++ + V A + + + +
Sbjct: 183 QYVDKEIKSVSVSEKDVKAYYDKYADEMKKQKQKAPEYKEVKSQIKKQLESQEKQ 237
>gi|326794311|ref|YP_004312131.1| Chaperone surA [Marinomonas mediterranea MMB-1]
gi|326545075|gb|ADZ90295.1| Chaperone surA [Marinomonas mediterranea MMB-1]
Length = 419
Score = 57.9 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/392 (11%), Positives = 95/392 (24%), Gaps = 63/392 (16%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ K ++L + + ++ LF+ V V Q + S ++ I
Sbjct: 1 MMKKLFLLLSI---VVTMNSPLFAAPKLLDGVVAIVDSQPLLESDINTRFQVIKDRI--- 54
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
+ G+ ++IL+ L+ + + +G+ + +
Sbjct: 55 ------PGGVMTAGIRRQILNQLIEETVQINYGKRLGIRIPQENTDAAVLNV----AQKF 104
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
L+R+GI+ Y + V + +N
Sbjct: 105 STDLGGLKQLLSRQGIDYSRYRQQIENEILINAVKQRVIKDRISITEQEISDFISASQNT 164
Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKY------------------------------ 220
L+ RH+ A L + +
Sbjct: 165 QSSKNELHLRHIIVRAKNETEALAKIKQIASGIASENDFINQAITYSDGQFALEGGDLGW 224
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
+ + P + + L EK ++
Sbjct: 225 RPVSQLPALFTKAINTQKGPLIGPLKSNAGYHLLWVIEKRSANVQLQAQTKTRHILLQPN 284
Query: 281 KEADEA---------FQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLAD 327
+ E ++ G+ F LA E LG + +
Sbjct: 285 EIRTEQQTVALINELYKRAMSGEDFAGLASEYSDDQGSTLQGGDLGWVKLGMMVPA--FE 342
Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + K G + FG+ I V + +
Sbjct: 343 KVMTATKTGAVSKPFRSQFGWHILKVEDRRKE 374
>gi|294340130|emb|CAZ88501.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas
sp. 3As]
Length = 262
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/176 (8%), Positives = 52/176 (29%)
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
V + ++ + +Y+ + + V + ++K
Sbjct: 86 AVQDEIRIARQNILIRALFNAYLQKHPITDAQIKAEYDKFVKSFGSTEYKAQHILVPSEK 145
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
+A ++ + K K K + N + + + + +
Sbjct: 146 EAQDIIAQLKKGAKFSELAKKYSKDTGSAANGGDLGWSTPNNYVPPFAKALEALKPGQYT 205
Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P+++ + V K+ ++ D+ + + + + L+++ +T
Sbjct: 206 QTPVQSQFGWHVIKLDATRPAKAPTLDQLKPQIQAELQRQEVTKYQDELRAKAKIT 261
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 11/80 (13%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ +V + +P S ++++ G V L + + + L+S +
Sbjct: 24 QNIATVNGKPIPQS----LADSVANSMAKQQGQAVTP------QLKEMVKNELISREVMV 73
Query: 101 QFIEDIGLEADHGRVWGEIA 120
Q + +GL+ V EI
Sbjct: 74 QEADKLGLD-KETAVQDEIR 92
>gi|260773615|ref|ZP_05882531.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio metschnikovii CIP
69.14]
gi|260612754|gb|EEX37957.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio metschnikovii CIP
69.14]
Length = 431
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S ++ + E L ++I++ L+
Sbjct: 28 DRVAVIVNSGVILQSDIDSALLTVRANAKTN-QQTLPPENI----LREQIIEKLIVDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG+ D + I +N+ + + +A +G+ E+ + K +
Sbjct: 83 QQEADRIGVRIDDNTLNDAITEI----AHNNQQTPEQLRLSIAEQGLTYPEFREQIRKEI 138
Score = 42.2 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 26/278 (9%), Positives = 83/278 (29%), Gaps = 9/278 (3%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
NI P+ + E+ + K S ++ + ++ +
Sbjct: 150 RRINIIPAEVDTLAELLAQETSATVQYKISHIQLRFNDGQDKSEVEAQANKLVAELNQGA 209
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ ++ + +++ + +F + ++ P S + I +
Sbjct: 210 DFSTMAITYSKGPRALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKI 269
Query: 472 IPARDRKLEEVLT----DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + V + + + E ++ N LV + +F ++ +
Sbjct: 270 DDIKGLETVAVTEVNARHILIKPTIILSDEGAKNQLNDLVRRINAGEASFAELAQQYSQD 329
Query: 528 LLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGP 583
+ Q + + + Q+ + PV + P + + + +V +
Sbjct: 330 PGSAAQNGELGYQTPELYVPEFKHQIETLPVGTI-SEPFKTVHGWHIVEVLDRREVDRTD 388
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K++ L + + + L++ V + +
Sbjct: 389 AAMKNRAYRILFNRKFNEEASTWLQELRAGAFVEILQD 426
>gi|170692424|ref|ZP_02883587.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
graminis C4D1M]
gi|170142854|gb|EDT11019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
graminis C4D1M]
Length = 259
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 41/119 (34%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G +F D+ K + +D ++ K + +
Sbjct: 142 EQQAKDLIAKI-KGGASFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+ + + +V + + ++ + Q + ++ L + L+ +
Sbjct: 201 QMSETPVHTQFGWHIIRVDDVRSITPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259
>gi|115315252|ref|YP_763975.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
OSU18]
gi|169656704|ref|YP_001429113.2| hypothetical protein FTA_1682 [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|254368149|ref|ZP_04984169.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
257]
gi|115130151|gb|ABI83338.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
OSU18]
gi|134253959|gb|EBA53053.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
257]
gi|164551772|gb|ABU62157.2| hypothetical protein FTA_1682 [Francisella tularensis subsp.
holarctica FTNF002-00]
Length = 475
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + + N++ + L ++ L +L+S + L
Sbjct: 58 NKTVAIVNSRPITSFELDQELAKLEA---MQPNSAFNTDPLK---LKRQALQDLISQSVL 111
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 112 LQLAERNNIMISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIRDQL 167
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 168 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 216
>gi|218777908|ref|YP_002429226.1| SurA domain protein [Desulfatibacillum alkenivorans AK-01]
gi|218759292|gb|ACL01758.1| SurA domain protein [Desulfatibacillum alkenivorans AK-01]
Length = 330
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/214 (13%), Positives = 63/214 (29%), Gaps = 13/214 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+ ++K T + L ++ V + + V V + S
Sbjct: 1 MMSCMKKNCLTALFSTLLTLMTV------VPSFAETELVDRIVAIVNTDVIMLSELNEKM 54
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
L I G + IL+ +VS ++Q E +G++ G V +
Sbjct: 55 APILAKIDA-AGLPDEQREKTIYKYREDILNTMVSSLLVEQESEKLGVKVMEGEVDSYLE 113
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP--SNLL 178
R + + + + ++L +GI+ + + + + V +
Sbjct: 114 RFK----QSSHLTDEALRAQLEADGISMDLFRNQIHDTILFQKLKTTEVDSKIVITDKEV 169
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
D + L +P + +
Sbjct: 170 QDYYNEHIDQYEGKKSYHLRYILLPYPENATEEQ 203
>gi|218261362|ref|ZP_03476209.1| hypothetical protein PRABACTJOHN_01875 [Parabacteroides johnsonii
DSM 18315]
gi|218224050|gb|EEC96700.1| hypothetical protein PRABACTJOHN_01875 [Parabacteroides johnsonii
DSM 18315]
Length = 226
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/201 (11%), Positives = 50/201 (24%), Gaps = 17/201 (8%)
Query: 25 FLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
F + D L S S V V + + F + + M + G E
Sbjct: 23 FAFI-IGDFLNSGSTYFRQSQEKVAEVDGEVIKIQEFQDRVDEMTEMYKMQTGSTSLPEE 81
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---------EIARSPLFHG-KD 129
+ + + D +V L++ ++G+ ++ I + +F +
Sbjct: 82 -YQTQIRQSVFDGMVQDIVLNEATSELGMGVGPEELFDMVQGENISPMIQQMQMFVNPQT 140
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
F ++ L + + L+Q
Sbjct: 141 GAFDKTALLNFLKTIDDDNIANYPADQQAQLLQARQFWMFWEKNIKRQRLEQKYTTLLSK 200
Query: 190 RSVDYIVLNNRHVPAIADPSN 210
+ A S+
Sbjct: 201 AVSANKLDAKDAFDGSAVSSD 221
>gi|89256873|ref|YP_514235.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
tularensis subsp. holarctica LVS]
gi|167009233|ref|ZP_02274164.1| peptidylprolyl isomerase [Francisella tularensis subsp. holarctica
FSC200]
gi|290953904|ref|ZP_06558525.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
holarctica URFT1]
gi|295312729|ref|ZP_06803471.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
holarctica URFT1]
gi|89144704|emb|CAJ80035.1| Peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
tularensis subsp. holarctica LVS]
Length = 469
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + + N++ + L ++ L +L+S + L
Sbjct: 52 NKTVAIVNSRPITSFELDQELAKLEA---MQPNSAFNTDPLK---LKRQALQDLISQSVL 105
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 106 LQLAERNNIMISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIRDQL 161
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 162 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 210
>gi|85713800|ref|ZP_01044790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
Nb-311A]
gi|85699704|gb|EAQ37571.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter sp.
Nb-311A]
Length = 305
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 12/117 (10%), Positives = 38/117 (32%), Gaps = 1/117 (0%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+ + K+G +F ++ K ++ + + + F+ +
Sbjct: 162 EDEAKKIEGELKKGADFAELAKKESKDPGASDGGDLGFFTKEQMVPEFSKVAFALEPGKI 221
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P++ + + KV + + D+ + Q + + +A L+ +
Sbjct: 222 -SDPVKTQFGWHIIKVEEKRARKAPDFDQVKPQIEQFVTRKAQAEYVAKLRETAKIE 277
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 9/91 (9%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
+ +++ + + + + V ++ S + Q++G + +
Sbjct: 25 LAAVLF-VGTPVHAADADPVLAKVNGTEIHQSDVNLA--------EQELGPSL--AQMDP 73
Query: 83 VGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
+ IL L+ + + E+ +E
Sbjct: 74 AAKQENILSFLIDMKIITKAAEEKKIENSEE 104
>gi|208778951|ref|ZP_03246297.1| peptidyl-prolyl cis-trans isomerase [Francisella novicida FTG]
gi|208744751|gb|EDZ91049.1| peptidyl-prolyl cis-trans isomerase [Francisella novicida FTG]
Length = 457
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + + N++ + L ++ L +L+S + L
Sbjct: 40 NKTVAIVNSRPITSFELDQELAKLEA---MQPNSAFNTDPLK---LKRQALQDLISQSVL 93
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 94 LQLAERNNIMISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIRDQL 149
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 150 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 198
>gi|328676627|gb|AEB27497.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase SurA) [Francisella cf. novicida Fx1]
Length = 469
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + + N++ + L ++ L +L+S + L
Sbjct: 52 NKTVAIVNSRPITSFELDQELAKLEA---MQPNSAFNTDPLK---LKRQALQDLISQSVL 105
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 106 LQLAERNNIMISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIRDQL 161
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 162 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 210
>gi|260909468|ref|ZP_05916172.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
str. F0295]
gi|260636393|gb|EEX54379.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 472
str. F0295]
Length = 474
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 57/470 (12%), Positives = 123/470 (26%), Gaps = 33/470 (7%)
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
R F +N K+ + + A +
Sbjct: 31 RPISRSEFEYSYNKNNTDNVVDKKTVAQYVDLFVNYKLKVEAALAARLDTTQAFRNEFAD 90
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
+ + S + + + Q + + ++ +
Sbjct: 91 YRDQQVRPSFVTSDDMEKAARQLYDDTRQRVDGQGGLIRVAHIMLMLPQKASKEAQNRAE 150
Query: 281 KEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
D + +LK+G F LA ++G + L K + K G
Sbjct: 151 LRIDSIYNALKRGADFATLARKLSDDKGSAQQGGELPWLQKGQTLKEFEDAA--FALKPG 208
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
+ + + GY + + + I ++ + + +L E
Sbjct: 209 EISKPVLSPAGYHVIKLIER----RMFLPYDSVKADILAYIEQSGMREQIIDNKLNEMAK 264
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
+ + + + L D A K + + + E V+ K
Sbjct: 265 ALGTTRTTADVLQERKVQLEAKDPALKYLIQEYHDGLLLYEVSNRAVW------EKAAKD 318
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
Y K R A +KA+ ++ +
Sbjct: 319 EEGLRYYFSKNKKRYAWDEPRFKG--------------IACYAKTKADFKAVKKLVKKLP 364
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
F + + L + + I R+ E F S V + IE + + V
Sbjct: 365 FSEWNEALRKAFNNDSTI-RIKVERGMFKPGDNSLVDR--DAFKRTVSIEMNPEFPIVGV 421
Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
K+ +E D + + + L + L+ QY V V++ +++
Sbjct: 422 IGKKLKAPKEMDDVRALVVADFQETLEKEWVKDLRKQYKVEVNEAVLKTV 471
>gi|260904425|ref|ZP_05912747.1| SurA-like protein [Brevibacterium linens BL2]
Length = 254
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 6/175 (3%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S + V V +K+ F+ ++ + + + ++ L +
Sbjct: 47 SGKPNTDGIPKVVAEVNGEKITKDDFVPLYETQYQQMQMQSQQS--GQQVDEKQLKTQTA 104
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+NLVS L Q E ++ V + S K ++ S F++ + ++G++EK+
Sbjct: 105 ENLVSTELLSQEAEKRDIKVSDKDVDKGLEES----AKSSQMSKKDFLAAMKKQGMDEKK 160
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
L+ ++ G + S + QA + + +
Sbjct: 161 VHAELKTQLAIEGLIKDEYGEFKASGEDIGQAYQQAKTQQEQMAQQSGQQAQEVP 215
>gi|134094945|ref|YP_001100020.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Herminiimonas arsenicoxydans]
gi|133738848|emb|CAL61895.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
[Herminiimonas arsenicoxydans]
Length = 258
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/148 (11%), Positives = 46/148 (31%), Gaps = 4/148 (2%)
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ DR + ++ E A ++ + K G F ++ K
Sbjct: 115 DIKAEYDRFRAQASDK---EYHARHILVEKEEDAKAIIAKL-KGGAKFEELAKQSKDPGS 170
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
N + F + S + P++ Y V K+ + + + ++
Sbjct: 171 ADNGGDLDWAAPAAFVKPFSDAMVSLQKGQLYDTPVKTQFGYHVIKLDDVRAAKIPTLEE 230
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + + + L + L+++ +
Sbjct: 231 VKPQIAEGLQQKKLQAFQQQLRAKAKIQ 258
Score = 39.5 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V + VP S KQ Q + L + + L++ L
Sbjct: 23 QNLAVVNGKPVPSSRADIMIKQMAAQGQQ-----------DTPELRAMVKEELINREILI 71
Query: 101 QFIEDIGLEADHGRVWGEIA 120
Q + +GL + V ++
Sbjct: 72 QEADKLGLG-TNAEVKSQVE 90
>gi|56479153|ref|YP_160742.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
aromaticum EbN1]
gi|56315196|emb|CAI09841.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aromatoleum
aromaticum EbN1]
Length = 260
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 43/130 (33%), Gaps = 1/130 (0%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
K++K E +A ++ + + G+ F + + F
Sbjct: 132 KEYKPRHILVETEEEAKAIIGKL-RAGEKFEALATASKDPGSKDKGGELGWSNPGMFVKP 190
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ P+++ Y V ++ + + ++ L Q + + ++ +
Sbjct: 191 FSEAMVKLEKGQYSATPVKSDFGYHVIQLDDVRDLKAPAFEEVKPQLEQRLQQKKIEKHV 250
Query: 608 AYLKSQYSVT 617
A L+++ V
Sbjct: 251 ADLRAKAKVE 260
>gi|187932060|ref|YP_001892045.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
tularensis subsp. mediasiatica FSC147]
gi|187712969|gb|ACD31266.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
tularensis subsp. mediasiatica FSC147]
Length = 469
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + + N++ + L ++ L +L+S + L
Sbjct: 52 NKTVAIVNSRPITSFELDQELAKLEA---MQPNSAFNTDPLK---LKRQALQDLISQSVL 105
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 106 LQLAERNNIMISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIRDQL 161
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 162 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 210
>gi|254372525|ref|ZP_04988014.1| hypothetical protein FTCG_00087 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570252|gb|EDN35906.1| hypothetical protein FTCG_00087 [Francisella novicida GA99-3549]
Length = 469
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + + N++ + L ++ L +L+S + L
Sbjct: 52 NKTVAIVNSRPITSFELDQELAKLEA---MQPNSAFNTDPLK---LKRQALQDLISQSVL 105
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 106 LQLAERNNIMISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIRDQL 161
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 162 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 210
>gi|269123720|ref|YP_003306297.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptobacillus
moniliformis DSM 12112]
gi|268315046|gb|ACZ01420.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Streptobacillus
moniliformis DSM 12112]
Length = 599
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 61/599 (10%), Positives = 168/599 (28%), Gaps = 40/599 (6%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ---ELGMIS 68
V +F+ + + + + + ++ + +K+ F + ++ ++
Sbjct: 11 KVITVFIAIAMLIPVFMSAYTYFSNREKKTVMLKIDGEKIYKEDFDKKYDNFSKQIESLN 70
Query: 69 QKIGFVVNSERARSVGLDKK-----ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
++I N ++ + L ++ +L V A I ++G A + +
Sbjct: 71 EQIIKAKNLDKEKYQALPEELVKGYVLAGQVYEALNKVLINELGARASKKEIEQKFKELE 130
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
G ++ L +G + + L + + + ++ +++
Sbjct: 131 DQLGGSK-----GLITALNAQGQTVENLRETIKMFLLNDKKLEIIKQKISVTDKEIEERF 185
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
D + + ++ + + + K
Sbjct: 186 NQRKFTEYEDKSFAEVKDEVKDDILNEKAKIYEKSLIENKFNNAKISISDKTIEPALNKL 245
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
K++ +E + Y + + L F E FQ++ KG L ++
Sbjct: 246 KEVFFEKEEYKFTYMDVLSQIVN--------LFFKQGNGYTEDFQNMIKGLIETDLDKKI 297
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
I G + + + I + + + +F +
Sbjct: 298 RIRDKAIESGLTLNQDLLPKYQLEYIAEEYVSKLIGSYVATEEEMRAI-FNKYQGAFDIQ 356
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
+ I + K E+ + + +R GK
Sbjct: 357 HTVSGEIIGMAYIPSDDDAKETENKVIELMKTITKENFADKARELSKDPGSAQNGGDLGK 416
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
A I K + S + G ++ + E ++ + +
Sbjct: 417 -------ANINNFVPEFRTAVAKAEAGSIVGPIKTQFGYHII--LVEEKDENNKDIATLK 467
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT------TNQINRM 537
+ K +T EE+ +K ++ + + +I + +++ +
Sbjct: 468 HILIKVEAGERTKEEIKNKVLEIKELITSNKLTWENITSDTTGKYNEYGIKDHFSKVKQN 527
Query: 538 DNEN-KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
D + S++FS V +++ S+V+ + T ++ L
Sbjct: 528 DKLPVVGYDKTVNSKLFSAKVGDFIEISLDD--SFVIIQKTEDTPYKKVSYNEVKEKLN 584
>gi|46445912|ref|YP_007277.1| hypothetical protein pc0278 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399553|emb|CAF23002.1| hypothetical protein pc0278 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 345
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/235 (13%), Positives = 75/235 (31%), Gaps = 12/235 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV--SVGRQKVPFSSFIN 58
ML+ R+ R + + VV+ + F +G AL + S V +V +++ +
Sbjct: 1 MLDFFRRYQRYFFF-VITVVIIISFSFFGTYSALGTNSWREQVAFKAVDGKEITRAEVDE 59
Query: 59 S--WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ + V + K L+ ++ ++ + ++ +
Sbjct: 60 MAIFLATDNEDKRLYNGVWGPNFLNDGVIRKDFLETGLAQELVEAYQNEMK-----DPLN 114
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+ + F + F+S G E +H+ + S D V R
Sbjct: 115 KRLEKEKKFTLYTH--PQAPFLSVENAWGYFSPEMNEHFKILQSTHDNVSPKAFDSRVKL 172
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
L ++ + + Y + + L+ + +++ P + R
Sbjct: 173 FLAEKKFSPAMLRQVLRYQEKQYNWLTPDQELDRINLSLFGYHTLEDWFTPYFTR 227
>gi|170721642|ref|YP_001749330.1| hypothetical protein PputW619_2461 [Pseudomonas putida W619]
gi|169759645|gb|ACA72961.1| conserved hypothetical protein [Pseudomonas putida W619]
Length = 213
Score = 57.9 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 38/157 (24%), Gaps = 2/157 (1%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
S V + + + L + + + N + L + LD L+
Sbjct: 16 GWADSPAARVNGVDIGLLRLERYFSEYLQAQGRAVTSIRNPTLYKR--LRSQALDELIDK 73
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
L Q + G+ +V ++ F + + R + + +
Sbjct: 74 ELLWQEAQRRGIAISDEQVSAQLGEVEAAFSSPALFERRLAEAGFDRAAYADYLHRELAA 133
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + +R D
Sbjct: 134 QQVYAQLSAVAEPTQAEVEAFYQANQERLQGAQNQSD 170
>gi|262375382|ref|ZP_06068615.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
gi|262309636|gb|EEY90766.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter lwoffii SH145]
Length = 440
Score = 57.9 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 41/406 (10%), Positives = 104/406 (25%), Gaps = 52/406 (12%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
R +T K + + ++ + V V + S +
Sbjct: 3 RTLMKTKQLKQIFKATALALCLSSAMTTFAVAQPKDEVVAVVDNSIILRSDLAQGVAEIS 62
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA---- 120
+ ++ V L+++ L+ L+ + ++ + D + +
Sbjct: 63 HQLQKQKKAVPP-----QQYLEQQALEQLIIRQAQLEQVKRYNIRPDEKALNEAVLKVAR 117
Query: 121 -----RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG----- 170
F K + + + + S R I E ++ + + + +
Sbjct: 118 DSGSPSLEAFQQKLDAMAPNTYASL--RNRIAEDLALNRLRQQIVTSRIQITDQDVKNFL 175
Query: 171 --------------------GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ + Q K+ + + I + ++
Sbjct: 176 NTPQGQALLGSQVHVLHLRVSGENAEQIATQVKQELNSSNDIQAIGKKYSTGGVKVEAAD 235
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ E + + + + + E + +K +
Sbjct: 236 MGVRNLSEIPAELAARVTTLQPGQTSELIPVADGVHVLKLLERKGGEQKALVPQYLTRHI 295
Query: 271 TVEQLVFPNQKEADEAFQ----SLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD 322
++ + + A + LK+G+ F LA SLG S +
Sbjct: 296 LIQPSEVVSPENAKQMIDSLYNRLKQGEDFTVLASTFSNDTGSARDGGSLGWVSPGVMVP 355
Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
+ G F+ FG+ I VS + + +
Sbjct: 356 E--FEQQMKSTPVGQFSKPFQSQFGWHILQVSETRQQDMTQEYQER 399
Score = 37.1 bits (83), Expect = 8.0, Method: Composition-based stats.
Identities = 26/251 (10%), Positives = 74/251 (29%), Gaps = 5/251 (1%)
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
++ E +A + S + + V +
Sbjct: 186 SQVHVLHLRVSGENAEQIATQVKQELNSSNDIQAIGKKYSTGGVKVEAADMGVRNLSEIP 245
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
L P + + DG ++ ++ + + + LT + +
Sbjct: 246 AELAARVTTLQPGQTSELIPVADGVHVLKLLERKGGEQKALVPQYLTRHILIQPSEVVSP 305
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNENKFFGYDGISQVFSGP 556
E + + + K+G++F + + + + + Q+ S P
Sbjct: 306 ENAKQMIDSLYNRLKQGEDFTVLASTFSNDTGSARDGGSLGWVSPGVMVPEFEQQMKSTP 365
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQE--KDKFISYLTQMMN-KDLLDSVIAYLKSQ 613
V P ++ + + +V+ ++ + + +++ L LDS + ++
Sbjct: 366 VGQF-SKPFQSQFGWHILQVSETRQQDMTQEYQERMARQLLSERQFDAELDSWLRETRNN 424
Query: 614 YSVTVHDNLIQ 624
V + D +
Sbjct: 425 AYVEIKDPQLD 435
>gi|196230321|ref|ZP_03129184.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
flavus Ellin428]
gi|196225918|gb|EDY20425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
flavus Ellin428]
Length = 319
Score = 57.9 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/197 (11%), Positives = 58/197 (29%), Gaps = 9/197 (4%)
Query: 20 VLFVPFLIWGLSDALFSVSGSST----VVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
++ + + GL+ + F+ V V FS + + +
Sbjct: 6 LIPLSLVCIGLAISTFTARAQEVLDGIAAVVNSDVVTFSQVRELVGPKEKQAHETLKGQE 65
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
E+ + + + +++L+ A + Q + G + I +
Sbjct: 66 LVEKIKE--IRTEAINDLIDRALIIQEFKTKGYTIPDYFIDDRIQGIIKDEFGN---DRQ 120
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
F+ LA + +++ D M+ +++ V G A
Sbjct: 121 AFLRTLAAQNYTLEKFRDLQKDMIIVSEMRKQAVKGATSVPDAKITAYYKEHLEEYSQPE 180
Query: 196 VLNNRHVPAIADPSNAV 212
+ R + +++
Sbjct: 181 QMKLRMIAIRGVENDSR 197
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 15/155 (9%), Positives = 36/155 (23%), Gaps = 3/155 (1%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+I + + + + K + + G F D+ +
Sbjct: 163 AKITAYYKEHLEEYSQPEQMKLRMIAIRGVENDSRRKMIDEIRQKIVGGAEFGDLARMYS 222
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---G 582
+ + K FS + G Y+++
Sbjct: 223 EDSSQEQYGDWGWIDRKKLNESLTKTAFSLKPGEMSQVVELGGSYYLLYCEAKKPATVKP 282
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
D+ L Q + +A L+ + +
Sbjct: 283 LKDVHDEIEKVLLQTERQQQQADWLAKLRRKAYIK 317
>gi|194335197|ref|YP_002016991.1| SurA domain [Pelodictyon phaeoclathratiforme BU-1]
gi|194307674|gb|ACF42374.1| SurA domain [Pelodictyon phaeoclathratiforme BU-1]
Length = 438
Score = 57.9 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 59/510 (11%), Positives = 131/510 (25%), Gaps = 75/510 (14%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ K L++ L + V VG + + S +
Sbjct: 2 KKVFGKAALLLFIGS---SSLQAPAIADMADRIVAVVGNEVIFKSEIDSRELMARMQY-- 56
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
E ++ GL + ILD L+ + + + D + S F
Sbjct: 57 -------PELTKNNGLSRSILDGLIDQKIILAKAKIDSVSIDENSISSA--ASERFRELG 107
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
KF+ +R G + ++ + L +V
Sbjct: 108 TKFTSK--ADMESRLGKSSAGILEGIRQELRNQQLV------------------------ 141
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
R A S + ++ K+
Sbjct: 142 ------DTLRRKKSAGVTVSYDEVMAFYSANKEQIPQIP--------------------- 174
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
+ KY Q + ++ E Q +++ G + S
Sbjct: 175 ----EEVSVSQILKYPPVSAEEKAQSLATMERIRTEIKGGADFAAMARQYSQDPGSAQSG 230
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
LG +K + + +G + ++ +GY + + + +P+ +
Sbjct: 231 GDLGFVAKGQLIPSFENAA--YALNEGKISDIVETRYGYHLIQLLSKEPNSIHVRHILIG 288
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ + ++ + M + + + + +G
Sbjct: 289 FDRKSGDFSSVTRQLNAVRADVLGGKETFADMAKKYSEDPASAAQGGTILLSGSSNPLFS 348
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG--SYMWVQIKESIPARDRKLEEVLTDVK 487
A+ + Q + K +S+ + P G Y ++ E IPA E+ ++
Sbjct: 349 PLALRPQLQQILSTLQKSGDISEVQKIDPPQGEPFYAIYRLNERIPAHKLNTEKDYAYLE 408
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ K + QL E +
Sbjct: 409 ELALADKNQQIFIKWVEQLRKEVYVRTSDI 438
>gi|114566203|ref|YP_753357.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114337138|gb|ABI67986.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
Length = 324
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 11/156 (7%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMIS----QKIGFVVNS----ERARSVGLDKKIL 90
S ++ V + + + + + + G +S + L +
Sbjct: 26 ASPSIAEVNSEIITQEQYDKACQNLKQAYEVQNPAQSGDKADSSGKIDSEMEKRLQDQAF 85
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
D+LV A L Q E G++ + I + K D + L +NEKE
Sbjct: 86 DSLVMQALLRQDAEKRGIKIKEKEIDVAIDSFKANLAAEGK---DAYQKFLQENNLNEKE 142
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ L + + L Q +
Sbjct: 143 LREEARMQLLVNQLQKKINASITIEEEELQQYYQEN 178
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 50/303 (16%), Positives = 91/303 (30%), Gaps = 3/303 (0%)
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
D V EI + V A+ G ++M R
Sbjct: 22 NDKKASPSIAEVNSEIITQEQYDKACQNLKQAYEVQNPAQSGDKADSSGKIDSEMEKRLQ 81
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
M+ + + + + +D + + + A +
Sbjct: 82 DQAFDSLVMQALLRQDAEKRGIKIKEKEIDVAIDSFKANLAAEGKDAYQKFLQENNLNEK 141
Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
E + + + I I +ELQ Y++N + + ++ KEA
Sbjct: 142 ELREEARMQLLVNQLQKKINASITIEEEELQQYYQENIASFQEAAGMQISHILVATDKEA 201
Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
E L++G F QLA+E S LG ++ ++ L
Sbjct: 202 RELLTQLQQGADFAQLAQEHSSCASKAQGGYLGVVNENSNYVPEFKNAALQLKAGEITQE 261
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
+ FGY I ++P+ T SF EVK I Q+ K + + + L + +
Sbjct: 262 PVKSDFGYHIIKAGQLQPTTTKSFDEVKNQIRMQLEKEKENTLFSQYMEDLRQQAQIKDH 321
Query: 401 MDE 403
Sbjct: 322 RKS 324
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 40/128 (31%), Gaps = 4/128 (3%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+A +L+ + + + ++ + + NEN + + +
Sbjct: 196 ATDKEARELLTQLQQGADFAQLAQEHSSCASKAQGGYLGVVNENSNYVPEFKNAALQLKA 255
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN----KDLLDSVIAYLKSQ 613
+ P+++ Y + K + + D+ + + + L + L+ Q
Sbjct: 256 GEITQEPVKSDFGYHIIKAGQLQPTTTKSFDEVKNQIRMQLEKEKENTLFSQYMEDLRQQ 315
Query: 614 YSVTVHDN 621
+ H
Sbjct: 316 AQIKDHRK 323
>gi|87198910|ref|YP_496167.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
aromaticivorans DSM 12444]
gi|87134591|gb|ABD25333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Novosphingobium
aromaticivorans DSM 12444]
Length = 456
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 13/138 (9%)
Query: 37 VSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
+ V V + + + + G ++ E L ++L N
Sbjct: 56 GTNDPNVRRATAIVNGEIITGTDVEQRLALIVSA----NGGKIDGEE--KERLRMQVLRN 109
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
L+ Q + + AD G+V R ++ S D LAR G +
Sbjct: 110 LIDETLQIQEAKAADVPADDGQVDASYERVAT---QNFGQSADALEKYLARIGSSAASLK 166
Query: 153 DHYTKMLSRTDVVGMFVG 170
++ +++ V
Sbjct: 167 RQIRGEIAWQNLLRRNVQ 184
>gi|148255225|ref|YP_001239810.1| hypothetical protein BBta_3828 [Bradyrhizobium sp. BTAi1]
gi|146407398|gb|ABQ35904.1| putative exported protein of unknown function [Bradyrhizobium sp.
BTAi1]
Length = 312
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/235 (9%), Positives = 53/235 (22%), Gaps = 17/235 (7%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+ + L S VV V + K ++
Sbjct: 11 ALAICSLAVLASGAGLIPAQAQSIVVMVNGDPITDYDIEQRMKLNFLSTRKQ-------- 62
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
+++++ L+ + + G+E V A G + + +
Sbjct: 63 -----QSRQEVINELIDDKVKIKEGKKFGVEPTASDVDQSFAGM----GSRMRLNAEQLT 113
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
L +G+ + + T +V + A S
Sbjct: 114 KSLESQGVRPETLKARIKAEIVWTSLVRGRYKERLLVSDKDVAAAVAAAGGDSDQQGQAF 173
Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ I + Q + + R+ + + E+
Sbjct: 174 EYKMQPIVLIVSNSSNQAVMEARHKEAEALRARVQTCADANNVFKTTANAVIKEI 228
>gi|302039583|ref|YP_003799905.1| putative peptidylprolyl isomerase, PpiC-type [Candidatus Nitrospira
defluvii]
gi|300607647|emb|CBK43980.1| putative Peptidylprolyl isomerase, PpiC-type [Candidatus Nitrospira
defluvii]
Length = 304
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 10/101 (9%)
Query: 21 LFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ F + L+ + + + + S F W+ +
Sbjct: 25 AALGFCALGSLAGCTEPPQEEPVIAMINGRSITQSEFDIRWEDLSQATRARY-------- 76
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
G ++ LD L+ L Q GL+ +
Sbjct: 77 -EKEGGKRRFLDELIMRELLMQEARKQGLDQSDEIREKTLR 116
Score = 41.8 bits (95), Expect = 0.34, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 52/172 (30%), Gaps = 17/172 (9%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS-------------KANQLVLEYSKEG 514
+ E + R + EV + + + +++ A + + + G
Sbjct: 123 LDELLKDRIKTKVEVSKEELDAYLGKHANQLLANPKVQVSIMLLPNVYAAKDLKRQVEAG 182
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
NF + + + K + + V PI+ Y +
Sbjct: 183 GNFTRFALRYSIDERSRAKGGDLGPYKKGLLEPEVDALIPSLHPGVISDPIKTAQGYYLV 242
Query: 575 KVTNSKV----GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
KV+ + +++ L + LD V A L++ ++ + D
Sbjct: 243 KVSPLEPEILQADQATRERLRQELLAEKRRKRLDDVFAELRTGATIRLADAA 294
>gi|209883242|ref|YP_002287099.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
carboxidovorans OM5]
gi|209871438|gb|ACI91234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oligotropha
carboxidovorans OM5]
Length = 301
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 4/143 (2%)
Query: 477 RKLEEVLTDV--KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ EE + +++ E +A +V E K+G +F ++ K ++
Sbjct: 137 KVYEEASKQISGEQEVHARHILVETEDEAKAIVAEL-KKGADFAELAKKKSKDPGASDGG 195
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
+ + + F+ + P+++ + + KV + + ++ L
Sbjct: 196 DLGYFTKDQMVPEFSTAAFALETGKI-SDPVKSQFGWHIIKVEDKRARKAPPFEQVKPQL 254
Query: 595 TQMMNKDLLDSVIAYLKSQYSVT 617
+ + +A L+S+ V
Sbjct: 255 EAFVIRKAQADYVAKLRSEAKVE 277
>gi|238755738|ref|ZP_04617071.1| Chaperone surA [Yersinia ruckeri ATCC 29473]
gi|238706030|gb|EEP98414.1| Chaperone surA [Yersinia ruckeri ATCC 29473]
Length = 433
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 9/118 (7%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
S + +Q+ G + E L +IL+ L+ Q + +G+
Sbjct: 39 QSDVDGLLQSVKLN-AQQAGQQIPDE----ATLRHQILERLIMDNIQLQMAQKMGITVSD 93
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ IA N+ + D SRLA EG+N Y K + ++V V
Sbjct: 94 EALDKAIADIAA----QNRMTTDQMRSRLAAEGLNYSTYRAQIRKEMLTSEVRNNEVR 147
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 19/198 (9%), Positives = 53/198 (26%), Gaps = 7/198 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARDRKLEEVLTD 485
G+ + LF K + +++ + + + EV
Sbjct: 229 GQMGWGKLQELPTLFAERLKTTSKGDIVGPIRSGVGFHILKVNDIRGENKSISVTEVHAR 288
Query: 486 -VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V T ++ +K + F D K L + Q +
Sbjct: 289 HILLKPSVVMTDDQARAKLQAAANDIKNGKVTFADEAKRLSEDSGSAIQGGDLGWASPDI 348
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + + P+ + + + ++ + +KD+ L
Sbjct: 349 YDPAFRDALLKLKKGEI-SAPVHSSFGWHLIQLLDTRQVDRTDAAQKDRAYRMLFNRKFA 407
Query: 601 DLLDSVIAYLKSQYSVTV 618
+ + + ++ V +
Sbjct: 408 EEAQTWMQEQRAASYVKI 425
>gi|169830779|ref|YP_001716761.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Desulforudis audaxviator MP104C]
gi|169637623|gb|ACA59129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Desulforudis audaxviator MP104C]
Length = 297
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/168 (13%), Positives = 43/168 (25%), Gaps = 29/168 (17%)
Query: 24 PFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV 83
+ G TV V + + + ++G
Sbjct: 25 GLALGGCG----RSGDVETVAVVNGEPISRDELYAE-------MYAQMG----------- 62
Query: 84 GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
++ L L++ + Q G+E V + + S + F L
Sbjct: 63 ---QQTLQELITRKLIIQEGRAQGVEISDADVQTRLDEV----IESGFSSREEFQEALKA 115
Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
G+ +K+ L V+G + +A R F
Sbjct: 116 YGLEQKDLEQQIRVQLIVEGVLGKQIQLDEAEVKEYFEANRKRFGQPE 163
>gi|91783535|ref|YP_558741.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
xenovorans LB400]
gi|91687489|gb|ABE30689.1| Putative peptidyl-prolyl cis-trans isomerase [Burkholderia
xenovorans LB400]
Length = 259
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 41/119 (34%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G +F D+ K + +D ++ K + +
Sbjct: 142 EQQAKDLIAKI-KAGASFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+ + + +V + + ++ + Q + ++ L + L+ +
Sbjct: 201 QMTDTPVHTQFGWHIIRVDDVRNVTPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259
>gi|57239486|ref|YP_180622.1| hypothetical protein Erum7600 [Ehrlichia ruminantium str.
Welgevonden]
gi|58579465|ref|YP_197677.1| hypothetical protein ERWE_CDS_08010 [Ehrlichia ruminantium str.
Welgevonden]
gi|57161565|emb|CAH58493.1| putative membrane protein [Ehrlichia ruminantium str. Welgevonden]
gi|58418091|emb|CAI27295.1| Hypothetical protein ERWE_CDS_08010 [Ehrlichia ruminantium str.
Welgevonden]
Length = 425
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 25/216 (11%), Positives = 70/216 (32%), Gaps = 24/216 (11%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+ +R + + + + F + + + V V + +
Sbjct: 22 MIIHMRNRT--------IGLFLLIFAFY----CSNAFANVKMVAMVNGELISSLDLERYI 69
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
V+S+ A+ + LD+L+ Q E + + + +
Sbjct: 70 AISKFFY------HVDSDVAKDIE-----LDSLIDEYIWKQEAEKLKVVVSEQEILDAVN 118
Query: 121 RSPLFHGKDNKFS-HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ + G ++K + ++ F S ++G++ I H L ++ + V +
Sbjct: 119 QLFVMKGSNHKENHNNDFKSYTEQQGLDYDMLIQHVKSKLLWNKILMLKVVPYISVSNKE 178
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ + + I ++ + + S+ +T
Sbjct: 179 ILDSQDTMLSPNGLNIFVHIQEIVLPVGLSDNNVTD 214
>gi|304440474|ref|ZP_07400362.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371040|gb|EFM24658.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 370
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 47/137 (34%), Gaps = 11/137 (8%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV------NSERARSVGLDKKIL 90
+ +V +P +F + + I G + G+ + +L
Sbjct: 24 GNKPGVAATVNGVDIPVETFNEEYAAQRNSIVLTSGEDYLKEKLGKEDMTIDQGIREFVL 83
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+NLV + Q E ++ D +V +I + S + F +L +GI EK
Sbjct: 84 NNLVQMELVRQDAEKKDIKVDEKKVDEQINAI-----IEQSGSKEKFEEQLKEQGITEKF 138
Query: 151 YIDHYTKMLSRTDVVGM 167
+ D+ K +
Sbjct: 139 FRDYLAKQELVKEYQDH 155
Score = 37.9 bits (85), Expect = 4.8, Method: Composition-based stats.
Identities = 17/160 (10%), Positives = 53/160 (33%), Gaps = 9/160 (5%)
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL--VLEYSKEGKNFRDIGKNL 524
+KE + + + + K + + ++ + + +EGK+F ++ K
Sbjct: 155 HLKEELKISEEDAKAIYEKDKDKYFVADADHILVETEDEAKSIKKEIEEGKDFNELAKEK 214
Query: 525 GASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ ++ + + V + P++ Y + K+ + +
Sbjct: 215 SKDPTAKDNGGKLGEFSTGQMVKEFEDAVVKMKEGEI-SDPVKTQFGYHLIKLNSLR--- 270
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT--VHDN 621
+E D+ + + + L + L+ V ++
Sbjct: 271 HKEFDEVKDQIIETGTSEKLTEYLNKLEKDAKVKKYINPK 310
>gi|327402945|ref|YP_004343783.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
DSM 16823]
gi|327318453|gb|AEA42945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
DSM 16823]
Length = 651
Score = 57.6 bits (136), Expect = 6e-06, Method: Composition-based stats.
Identities = 62/665 (9%), Positives = 168/665 (25%), Gaps = 87/665 (13%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
+ + L + V+ + +KV S F+ + + +
Sbjct: 5 LVLALGILFSLNTIAQTDNVVMEIDGKKVTKSEFLQIY------LKNNNDPKYDKVSLDE 58
Query: 83 -VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
+GL KK E +G I + K ++
Sbjct: 59 YMGLFKKF-------KLKVAEAEALGY--------DTIPKLKKELAGYRKQLSQPYLIDS 103
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL--LDQAKRFYFENRSVDYIVLNN 199
+ + + + ++ V P + L ++ + +
Sbjct: 104 TKNSALVAQAYERMKNEVHAAHILVKVVENASPEDTLAAYNRILAIKKRIENGEDFATVA 163
Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
+ DPS A + +++ +Y+ + +
Sbjct: 164 KGKNGSDDPSAARNGGDLGYFTAFQMVYQFEEAAYMTQVGKISNPIRTKFGYHILKVIDI 223
Query: 260 NKEKYFSPEIRTV--------EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----L 307
+ + ++ + +K+ DE + L+ G+ F +LA E
Sbjct: 224 RPARGTMKAAHIMVATGKDAGQEELDDARKKVDEIYSKLQNGESFEKLAGEFSDDAQTAE 283
Query: 308 SDISLGSFSKEYI--PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP-----SF 360
L F ++ F+L GD + + +FG+ I + P
Sbjct: 284 KGGELPLFGTGTTTRMVPEFEEAAFALTANGDISKPVQTAFGFHIIKRLELTPLRSFDEL 343
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
Q + + + + ++ + + +
Sbjct: 344 KKEIQSKVNKDERAIVTQNSFIQKLKKSYSYKDNYSKSSKWFVQNIDTNYYKGTWNADAL 403
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+++ + + L Y Q E + + KL+
Sbjct: 404 KTNTAMFTLDKKEFTQKEFASYLQKNSRNFKNLDSKTLVQKQYTAWQNSEILAYEESKLD 463
Query: 481 EVLTD------------VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR---------- 518
+ + + + K + + L + + K +
Sbjct: 464 AKYPEFKALMQEYHDGILLYEIMSDKVWNKAIKDTSGLKIFFEKNNSTYAWGKRYNAYIY 523
Query: 519 ---------DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-----------SGPVE 558
+ L + +++ + + N++ + F +
Sbjct: 524 ECLNEDISKKVATMLKSDTISSRTVINVINKDSELNLRVRTGKFELESVPYLKGQNLKKG 583
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + Y + KV + + T L +A + ++ + +
Sbjct: 584 VNPAYVFDGK--YYIVKVDEILEPAPKTLTEAKGAATSDYQNYLEKEWLAEIGKKHPIVI 641
Query: 619 HDNLI 623
H+N++
Sbjct: 642 HENVL 646
>gi|58617519|ref|YP_196718.1| hypothetical protein ERGA_CDS_07920 [Ehrlichia ruminantium str.
Gardel]
gi|58417131|emb|CAI28244.1| Hypothetical protein ERGA_CDS_07920 [Ehrlichia ruminantium str.
Gardel]
Length = 425
Score = 57.6 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/199 (10%), Positives = 59/199 (29%), Gaps = 16/199 (8%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+ + + F + + + V V + +
Sbjct: 31 IGLFLLIFAFY----CSNAFANVKMVAMVNGELISSLDLERYIAISKFFYH--------- 77
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS-HDV 136
S LD+L+ Q E + + + + + + G ++K + ++
Sbjct: 78 --VDSDVAKDIALDSLIDEYIWKQEAEKLKVVVSEQEILDAVNQLFVMKGSNHKENHNND 135
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
F S ++G++ I H L ++ + V + + + + I
Sbjct: 136 FKSYTEQQGLDYDMLIQHVKSKLLWNKILMLKVVPYISVSTKEILDSQDTMLSPNGLNIF 195
Query: 197 LNNRHVPAIADPSNAVLTQ 215
++ + + S+ +T
Sbjct: 196 VHIQEIVLPVGLSDNNVTD 214
>gi|296532230|ref|ZP_06894978.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC
49957]
gi|296267447|gb|EFH13324.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC
49957]
Length = 401
Score = 57.6 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 46/173 (26%), Gaps = 10/173 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+S V V V + + G + + L ++ LV
Sbjct: 8 NSIVAVVNGDVVTAGE----VAGRARLFALNAGMGPAPDVVQR--LRPQVTRLLVDERLR 61
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q ++ G+ V + +G V +L GI + D +
Sbjct: 62 MQEVQRRGIPVPDEDVAEAVQEIESRNG----LPRGGLVGQLRAAGIPPRALFDQIRNQI 117
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ +V +G + + R+ L + + DP
Sbjct: 118 GWSRLVRAQLGQQAQISPAEVAEFVAAHKARTGQPEYLVSEIFIPVDDPGAEP 170
>gi|91227110|ref|ZP_01261594.1| survival protein SurA [Vibrio alginolyticus 12G01]
gi|269964662|ref|ZP_06178900.1| survival protein SurA [Vibrio alginolyticus 40B]
gi|91188762|gb|EAS75049.1| survival protein SurA [Vibrio alginolyticus 12G01]
gi|269830561|gb|EEZ84782.1| survival protein SurA [Vibrio alginolyticus 40B]
Length = 427
Score = 57.6 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S + K L +++ G + S L +++++ L+
Sbjct: 25 DKVAVIVNDGVVLQSDIETAMK-TLQANARQSGKSLPSTSV----LKEQVVEKLIIDTLQ 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG+ D R+ IA ++N+ S + + + EG++ E+ + K +
Sbjct: 80 GQEADRIGVRIDDNRLNQAIAEI----ARNNEQSVEQLAASVESEGLSYPEFREQIRKEI 135
Score = 39.8 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 29/275 (10%), Positives = 73/275 (26%), Gaps = 9/275 (3%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
NI P+ S E N K E+ + + +
Sbjct: 147 RRINILPAEVDSLAEQLSQETNATVQYKIGHIQLRFSDDKEKSAVEAEAKALAKKLNEGA 206
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
++ + +++ + +F + ++ P S + I +
Sbjct: 207 DFTEMAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKI 266
Query: 472 IPARDRKLEEVLT----DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + V + + + E + N+ V F +
Sbjct: 267 EDVKGLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRRIKAGEATFAQLATQYSQD 326
Query: 528 LLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGP 583
+ Q + + + QV + PV + P + + + +V +
Sbjct: 327 PGSAAQDGELGYQTPDLYVPEFKHQVETLPVGSI-SEPFKTVHGWHIVEVLDRRQVDRTD 385
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K+K L + + + L++ V +
Sbjct: 386 SAMKNKAYRILFNRKFNEEAGAWMQELRASAFVEI 420
>gi|91776233|ref|YP_545989.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
flagellatus KT]
gi|91710220|gb|ABE50148.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacillus
flagellatus KT]
Length = 272
Score = 57.6 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/154 (10%), Positives = 50/154 (32%), Gaps = 7/154 (4%)
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEE-----VSSKANQLVLEYSKEGKNFRDIGKNL 524
+ P + ++ K++ + + ++A ++ + K G +F + K
Sbjct: 111 KKNPVSEADIKLAYEKYKQELGDKEYSARHILVSTEAEAKDIIAQLGKGG-DFAKLAKEK 169
Query: 525 GASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ + + V P++ + V K+ +++
Sbjct: 170 SKDPGSQEKGGDLGWFSAAGMVKPFSDAVVKLQKGKYTTTPVQTQFGWHVIKLEDTRATQ 229
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
D L + + + L+ ++ L+S+ +
Sbjct: 230 PPSYDDVKDGLQKQLQQRNLEKLLTDLRSKAKIE 263
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 33/98 (33%), Gaps = 11/98 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + +G+ F+ + +V +V + + S + K+ +
Sbjct: 7 ALIATVAFGMLQPAFAAGTNGSVATVNGKPIKQSLYDYIAKEASSR-----------GQT 55
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ I++ L+ + Q + GL+ + E
Sbjct: 56 VDDNVKNVIINKLIGSELIYQEAQRTGLDKQPDYLAKE 93
>gi|224534854|ref|ZP_03675423.1| basic membrane protein [Borrelia spielmanii A14S]
gi|224513794|gb|EEF84119.1| basic membrane protein [Borrelia spielmanii A14S]
Length = 336
Score = 57.6 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/199 (11%), Positives = 61/199 (30%), Gaps = 23/199 (11%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
K FL ++ + + + S + ++ V + + + +SF + + +
Sbjct: 1 MKSFLFLVILGTV------GINSFAQNTPVAIINLYKNEIITKTSFDSKV----DIFKKT 50
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
G + + K++L L++ Q G++ V I
Sbjct: 51 QGRDLTTAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT----QFGLV 100
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
F+ + + ++G N E + + LS ++ + + +
Sbjct: 101 NFTDEQIKQMIEKQGTNWGELLSSMKRSLSSQKLILKQAQPRFSEVKTPSEKEIIEYYEA 160
Query: 191 SVDYIVLNNRHVPAIADPS 209
+ V + + S
Sbjct: 161 NKTKFVNPDISRVSHVFFS 179
>gi|85716332|ref|ZP_01047305.1| hypothetical protein NB311A_19130 [Nitrobacter sp. Nb-311A]
gi|85696848|gb|EAQ34733.1| hypothetical protein NB311A_19130 [Nitrobacter sp. Nb-311A]
Length = 319
Score = 57.6 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/145 (11%), Positives = 33/145 (22%), Gaps = 17/145 (11%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
F +S S V V + + +
Sbjct: 13 LAVFAFLSFVSFNSPLSAQSVAVMVNGEPITTFDIEQR-------------SRLIKISTH 59
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
++++D L+ + + G+ + A G S + L
Sbjct: 60 KSASRQEVIDELIGEKVKIKEAKKFGVNPTSADIDRAYANM----GARMGMSPEQLTKSL 115
Query: 142 AREGINEKEYIDHYTKMLSRTDVVG 166
A +G+ L +V
Sbjct: 116 ASQGVRPDTIKARLRADLVWGSLVR 140
>gi|163750061|ref|ZP_02157304.1| survival protein surA [Shewanella benthica KT99]
gi|161330118|gb|EDQ01100.1| survival protein surA [Shewanella benthica KT99]
Length = 434
Score = 57.6 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 59/153 (38%), Gaps = 10/153 (6%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
L++ + + ++ + + V + V S N K + G + S
Sbjct: 7 LIIAILSLAMSHMA-LAENTTLDRVSVQINEGIVLESEITNMVKTVKANATA-AGQSLPS 64
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
++A L ++++ L+ Q + IGL ++ I K+ K + +
Sbjct: 65 DQA----LRTQVIERLIMTRLQMQMADRIGLHIGDLQLDQTIGNI----AKEQKLTVEQM 116
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+++ EG+N +Y + + ++ ++ + V
Sbjct: 117 RQKISNEGMNWGQYREQLREEITLGEIQRIQVQ 149
Score = 45.2 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 16/203 (7%), Positives = 64/203 (31%), Gaps = 4/203 (1%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD- 485
G + LF + + +++ ++ + ++++EV +
Sbjct: 231 GIWDYMNINEMPTLFAEVLSNAKKGDIIGPIRSGAGFHIIKVIDARGLQTKEVDEVRSRH 290
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
+ + + E + ++ V + +F + + + + + +
Sbjct: 291 ILVKPSPILSEERAKAMLDKFVKQIRAGDADFAALARQYSEDPGSGAKGGELGWADPSVY 350
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDL 602
SQ + P + + + ++ + +K +K + + +
Sbjct: 351 VPAFSQALNELKVNEISEPFRSSHGWHIVQLEERRTTDATDKFNTNKAHQLIFRRKFNEE 410
Query: 603 LDSVIAYLKSQYSVTVHDNLIQR 625
L + + ++++ + V + R
Sbjct: 411 LQAWLDEMRAEAYIEVFEADFNR 433
>gi|119952910|ref|YP_945119.1| basic membrane protein [Borrelia turicatae 91E135]
gi|119861681|gb|AAX17449.1| basic membrane protein [Borrelia turicatae 91E135]
Length = 344
Score = 57.6 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/199 (11%), Positives = 64/199 (32%), Gaps = 18/199 (9%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
K+ + + FL++ + + S + ++ VV + + + + F + + +
Sbjct: 4 IKVIFMGNVLCFLLFFVVG-ITSFAQNTPVVIINLHSNEIITKTEFDSKVNT----LKKT 58
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
G +++ K++L L++ Q G++ + V I
Sbjct: 59 QGRDLSNAE------RKQVLQILIADVLFGQEALKQGIKVEDAEVMQTIRT----QFGLL 108
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+ + + +G N E + + LS ++ + + + +
Sbjct: 109 NLTDEQIKQMVESQGTNWNELLSSMKRSLSAQKLILKMAQPKFSEIKIPGEKEVVEYYEA 168
Query: 191 SVDYIVLNNRHVPAIADPS 209
+ V + + S
Sbjct: 169 NKTKFVNPDIARISHVFFS 187
>gi|260767121|ref|ZP_05876066.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio furnissii CIP
102972]
gi|260617876|gb|EEX43050.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio furnissii CIP
102972]
gi|315181264|gb|ADT88178.1| survival protein SurA [Vibrio furnissii NCTC 11218]
Length = 431
Score = 57.6 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + + N L +++++ L+
Sbjct: 28 DRVAVIVNNGVILQSDIDTALLSVKANAKKN-----NRALPDEAVLREQVVEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E IG+ D R+ I + + + +A EG+ E+ + K +
Sbjct: 83 QQEAERIGVRIDDNRLNEAINDIAKENHQTA----EQLRVSVAAEGLTYPEFREQIRKEM 138
>gi|110639640|ref|YP_679850.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
33406]
gi|110282321|gb|ABG60507.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
33406]
Length = 697
Score = 57.2 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 69/641 (10%), Positives = 154/641 (24%), Gaps = 80/641 (12%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
I + S V I +L S F S ++ V + + F
Sbjct: 4 FNKINQRSGLVVGTIVAGLLLFLLGDAFTSKNSFFSSFNNKVGEIDGSNITVEEFQKEIT 63
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + + +D LV E G+E G +
Sbjct: 64 KAEALYGGNGN---------NANMDDLAWTQLVFERVNKVVYEKAGIEISEGEKVDLLEG 114
Query: 122 SPLFHGKDNKF---------------SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+ +F A + ++ R+
Sbjct: 115 EHMSDVVKQQFGSAEQLKQFLKYLDSDQIQSEEERASIKGRWRALKEYVYNERMRSKYET 174
Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH-VPAIADPSNAVLTQWFEKYKDNYR 225
+ + + + +Y+ + ++A+L + + +K+ +
Sbjct: 175 IIKKSEYVTKAEAKRYYHALNDKAEAEYVYVPYFSINDTTITVTDAMLEDYLKAHKNEFE 234
Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
+ I + +F+ +L ++ + + +A
Sbjct: 235 VEAGRSIEFAVFNNVPTGVDSSYVKKDLAELKDEFVLA-------KNDSAFIRSNSDAPA 287
Query: 286 AFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
++ + LA D G FS G
Sbjct: 288 DPSYVQLNQLPPALAARVNSLQIDSVYGPFSYGT------------------------GY 323
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
I + + + + + KA K + E
Sbjct: 324 SLTKILKIESDTNVMAKASHILFRTNETDPAEKKAEAKKQAQQILAEIQNGASFEKMAAQ 383
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + + GK K +FG P + V G Y
Sbjct: 384 YGGDGTAANGGDLGWFGKGQMVKPFE---------NAIFGASKPGLLPNIVETQFG-YHI 433
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++ + R + V +V+ T + + A+ G FR K
Sbjct: 434 IRVDVAKTGRKFLIASVQKNVEAF---DNTVDSIYRNADAFAASVKDTG-TFRTEIKKYT 489
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFS------GPVEMVKCFPIENGLSYVVFKVTNS 579
A + Q N + ++ V V + VV +T
Sbjct: 490 AGVAKYEQANVDGAAKGITSINEAREIVKWLYSDDRSVNDVSSVFTVENKNVVVL-LTRI 548
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ + + + ++++ +K + V +D
Sbjct: 549 REKGTASVEDVKDQIKPRV---IIEAKAKLIKEKLKVEGND 586
>gi|322434749|ref|YP_004216961.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
MP5ACTX9]
gi|321162476|gb|ADW68181.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidobacterium sp.
MP5ACTX9]
Length = 672
Score = 57.2 bits (135), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 9/177 (5%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
Q + S S +Q +Q+ ++ S K +L +++ L +++
Sbjct: 79 NDQIISRSDVDRSEEQLEQESAQQ---NLSPADLASRQ--KDMLRDMIDQQLLLSKAKEL 133
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
GL A V + ++ S D ++G++ +++ + VV
Sbjct: 134 GLNA-DAEVIRRLDDI---RKQNKLDSMDDLEKAARQQGVSFEDFKAQIRNQILTQQVVR 189
Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
VG + + + + + + + K N
Sbjct: 190 DEVGRRLQTTQAEQAKYYEAHKKDFEQPEQVRLSEILVPLPDTASPAEIEQAETKAN 246
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/318 (12%), Positives = 88/318 (27%), Gaps = 9/318 (2%)
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
+L P + +++ + + + S + +KD
Sbjct: 56 NLPPLPPAISPHGVVVENVVARVNDQIISRSDVDRSEEQLEQESAQQNLSPADLASRQKD 115
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ M + ++ + + D + + DL
Sbjct: 116 MLRDMIDQQLLLSKAKELGLNADAEVIRRLDDIRKQNKLDSMDDLEKAARQQGVSFEDFK 175
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
A I + Q+L + +D+ + T Y K+ +L E+L +
Sbjct: 176 AQI--RNQILTQQVVRDEVGRRLQTTQAEQAKYYEAHKKDFEQPEQVRLSEILVPLPDTA 233
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+ E+ +KAN L E K G +F ++ K +
Sbjct: 234 SPAEI-EQAETKANGLKSELMKGG-DFAEVAKKNSGGPTAAQGGELGLFKRGALAKVIED 291
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SV 606
Q F+ PI +V+ KV + + + + + + +
Sbjct: 292 QTFALAPGE-STQPIRTRQGFVILKVNEHQEPGAAPMKDVEPQIQEALYMNAMQPALRAY 350
Query: 607 IAYLKSQYSVTVHDNLIQ 624
+ L+ V + I
Sbjct: 351 LTKLRENAYVDIQPGFID 368
>gi|295689679|ref|YP_003593372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
ATCC 21756]
gi|295431582|gb|ADG10754.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
ATCC 21756]
Length = 452
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 36/140 (25%), Gaps = 16/140 (11%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
S V + + + + + + + ++ L +L+
Sbjct: 57 SESVAAVVNDDIISSYDLMQRMRLLMATSGMQ------PTQENLPQIQQEALRSLIDERL 110
Query: 99 LDQFIED----IGLEA--DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
Q + + V ++A + NK + D L ++GI +
Sbjct: 111 QMQELRRVEKQQKITIISTDKEVDEQVADI----AQSNKMTSDQLKQSLVQQGIGLDTWR 166
Query: 153 DHYTKMLSRTDVVGMFVGGM 172
S + G
Sbjct: 167 AQLRADSSWQSWIQGRYGSR 186
>gi|150020160|ref|YP_001305514.1| hypothetical protein Tmel_0255 [Thermosipho melanesiensis BI429]
gi|149792681|gb|ABR30129.1| hypothetical protein Tmel_0255 [Thermosipho melanesiensis BI429]
Length = 328
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/299 (10%), Positives = 79/299 (26%), Gaps = 8/299 (2%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFS------SFINSWKQELGMISQKIGFVVNSERARSV 83
+ + +STV V + + + + N+E V
Sbjct: 14 VFSFSEQLPATSTVAIVNEEVITLETLNSVADVQKLMVSISQIDQTFFNILSNTEEGIKV 73
Query: 84 GLD--KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
L + IL+ LV + QF E V + + +D + F L
Sbjct: 74 ILRYKRAILEQLVDKYLIVQFAEKYNARPSDEEVKQLVDEQLSNYLRDQGIDEETFNFYL 133
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
+ E + + ++ + + + ++ + +++D ++
Sbjct: 134 EYANMGSLEDFKKRMYLNTLVNLSIENLYKAVTKDATITVSEARDYYEKNIDKYATPTQY 193
Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
+ S+ + + + + E + + + Y KN
Sbjct: 194 DLYLLKLSSDSVARDVKNRISGGESFEKVAKELGIDKYFYEGLSEGEELSQKLWMYIKNA 253
Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
+ + + + +S + + EE S F +
Sbjct: 254 PEGAILGPIDDKNGFYLFKILKIIPMRSKPFEEVKHDIIEEMLSSKKSTIWSEFIDKEF 312
>gi|197104227|ref|YP_002129604.1| peptidyl-prolyl cis-trans isomerase family protein
[Phenylobacterium zucineum HLK1]
gi|196477647|gb|ACG77175.1| peptidyl-prolyl cis-trans isomerase family protein
[Phenylobacterium zucineum HLK1]
Length = 318
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 12/157 (7%), Positives = 43/157 (27%), Gaps = 1/157 (0%)
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + E+ ++ + +++ + + + A V + G +F +
Sbjct: 122 EDVVADAVTENNIRGLYAEQQRVAKRQEEIRARQIVLATEADAEA-VKKLLAAGASFEAL 180
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
T + + P E + KV + +
Sbjct: 181 AMERSRDPETRFNGGDLGYFTTDVMPEAYELALKTAKPGEIVGPFEVEGGVALVKVEDRR 240
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + + + + D + ++ L+ + +
Sbjct: 241 LEQPITLEAARPQIVRFLTYDRIRDLLEKLRGKAKIE 277
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 27/104 (25%), Gaps = 10/104 (9%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSST-VVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+ L + G D V V + V S + G
Sbjct: 12 LVLALAGTLAACGGNGDGDRPPERGDVAVARVDGRTVWASDVKRE---AVAQGLIGEGEP 68
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
++ + L +++LD +V L L D V
Sbjct: 69 LDP----ASDLFRRVLDEVVDQKLLAAEALKRNL--DEDPVAQR 106
>gi|126701124|ref|YP_001090021.1| putative foldase lipoprotein [Clostridium difficile 630]
gi|254977125|ref|ZP_05273597.1| putative foldase lipoprotein (late stage protein export
lipoprotein) [Clostridium difficile QCD-66c26]
gi|255094454|ref|ZP_05323932.1| putative foldase lipoprotein (late stage protein export
lipoprotein) [Clostridium difficile CIP 107932]
gi|255102710|ref|ZP_05331687.1| putative foldase lipoprotein (late stage protein export
lipoprotein) [Clostridium difficile QCD-63q42]
gi|255308531|ref|ZP_05352702.1| putative foldase lipoprotein (late stage protein export
lipoprotein) [Clostridium difficile ATCC 43255]
gi|255316205|ref|ZP_05357788.1| putative foldase lipoprotein (late stage protein export
lipoprotein) [Clostridium difficile QCD-76w55]
gi|255518867|ref|ZP_05386543.1| putative foldase lipoprotein (late stage protein export
lipoprotein) [Clostridium difficile QCD-97b34]
gi|255652046|ref|ZP_05398948.1| putative foldase lipoprotein (late stage protein export
lipoprotein) [Clostridium difficile QCD-37x79]
gi|306521784|ref|ZP_07408131.1| putative foldase lipoprotein (late stage protein export
lipoprotein) [Clostridium difficile QCD-32g58]
gi|115252561|emb|CAJ70404.1| Peptidylprolyl isomerase PrsA-like [Clostridium difficile]
Length = 331
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/194 (13%), Positives = 54/194 (27%), Gaps = 6/194 (3%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
++ L + ++ +S S S TV +V K+ F + + Q G +
Sbjct: 4 VITLVIAMILV-VSVTACSSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYGKDIWD 62
Query: 78 ERAR-----SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ ILD L++ + + L V GKD K+
Sbjct: 63 KEVEKGVKYKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEKSFKELKDAMGKDEKY 122
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ + E + +++ D + + F +
Sbjct: 123 KEQLKKLGIDDEFLRDQQEKDLAMQNYQSNFAKKTKISDEEMKKYYDTHKDEFKKDEVEA 182
Query: 193 DYIVLNNRHVPAIA 206
+I+L
Sbjct: 183 SHILLKTVDDNNKP 196
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 33/284 (11%), Positives = 77/284 (27%), Gaps = 3/284 (1%)
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
+ +I + K + + + +V + + L +++
Sbjct: 48 YKDSMEQTYGKDIWDKEVEKGVKYKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEK 107
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ K K + + +E+ L + + K Y
Sbjct: 108 SFKELKDAMGKDEKYKEQLKKLGIDDEFLRDQQEKDLAMQNYQSNFAKKTKISDEEMKKY 167
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
E +L V + K + + K + L+ K G++F + K
Sbjct: 168 YDTHKDEFKKDEVEASHILLKTVDDNNKPLSDKEKAEAKKKAEEALKEVKSGEDFAKVAK 227
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
++ + FS V +E Y + KVT+ ++
Sbjct: 228 KYSQDTSASDGGKLGFFSRGQMVAEFEDAAFSMKKGEVSDL-VETQYGYHIIKVTD-RIN 285
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + K+ I L + V + +I +
Sbjct: 286 EQTSFEDAKETIKDQLLKNKYQEQIEKLTKEAKVEKDEKVINKI 329
>gi|86747655|ref|YP_484151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris HaA2]
gi|86570683|gb|ABD05240.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris HaA2]
Length = 306
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 46/135 (34%), Gaps = 6/135 (4%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+V V+T +E + A +L K+G +F ++ K ++ +
Sbjct: 149 EQEVHARHILVETEDEAKAIAEEL-----KKGADFAELAKKKSKDPGASDGGDLGFFTKD 203
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
+ + F+ + P+++ + + KV + D+ + Q + +
Sbjct: 204 QMVPEFSAVAFALEPGKI-SDPVKSQFGWHIIKVEEKRNRKPPTFDQVKPQIEQYVTRKA 262
Query: 603 LDSVIAYLKSQYSVT 617
+ L+ V
Sbjct: 263 QSDYVTQLRQAAKVE 277
Score = 37.5 bits (84), Expect = 6.4, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 14/104 (13%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFINSWKQEL 64
R A R+ I L+ + ++ V V ++ S +
Sbjct: 9 RSALRS---GIISAAATGCLAFALLASPMARAQDANPVLAKVNGAEIRQSDVTLA----- 60
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
+++G + + + +L L+ + + ED +
Sbjct: 61 ---EEELGPSL--AQMDPATKKENVLSFLIDMKIVAKAAEDKKI 99
>gi|149907522|ref|ZP_01896269.1| survival protein surA [Moritella sp. PE36]
gi|149809192|gb|EDM69121.1| survival protein surA [Moritella sp. PE36]
Length = 428
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/185 (10%), Positives = 51/185 (27%), Gaps = 6/185 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + + S + ++ G + S+ L ++ LD L+ +
Sbjct: 25 DEVIAIVNEEVILASDVNTLTRSVTARATK-AGQTLPSQEV----LTQQALDKLIIDSLQ 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKD-NKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q + +G+ + ++ + + + V E+ T
Sbjct: 80 LQMAKKMGMRISNAQLEDTLNNIAKGDNQTVEQLRQSVVADGGDFNDYKEEIRTQILTNE 139
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ R + + + L+ +NR + R + + L
Sbjct: 140 VQRMQMRRRITISDQDVDNLIAIIDEQGQKNRQYRVNHIMLRVPNEADNATMEALQTKIA 199
Query: 219 KYKDN 223
+
Sbjct: 200 DIQTQ 204
Score = 42.5 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 19/282 (6%), Positives = 69/282 (24%), Gaps = 10/282 (3%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I + + + + R + + + +
Sbjct: 142 RMQMRRRITISDQDVDNLIAIIDEQGQKNRQYRVNHIMLRVPNEADNATMEALQTKIADI 201
Query: 407 REKIVSID-----LPLVDFAGKDVKGKEVAAIPYKEQL-LFRVFGKDDPLSKDHTVALPD 460
+ ++ + + + K + G + + E LF +
Sbjct: 202 QTQLNAGEPFANLALALSAGPKALDGGDWGWMNINEMPTLFAEAVTNAKKGDIIGPIRSG 261
Query: 461 GSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+Q+ + +EV + + + ++ S N+ + F +
Sbjct: 262 AGLHIIQVSDMRGVETVLTKEVNARHILIKPSVILSDDKAQSLLNEYLTRIKSGDAEFAE 321
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+ K + + + + + + + + ++ +
Sbjct: 322 LAKAYSDDTGSAVKGGELGWADPNIYVPAFKLALQDLKKGEISPTFRSSHGWHIVQLIDR 381
Query: 580 KVGPVQEKDKFI---SYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ +K L + S + LK + + +
Sbjct: 382 RTQDTTDKANRQKAWQLLYNRRAAEESQSWLNELKQEAYIRI 423
>gi|52078715|ref|YP_077506.1| putative lytic transglycosylase YomI [Bacillus licheniformis ATCC
14580]
gi|52784085|ref|YP_089914.1| hypothetical protein BLi00261 [Bacillus licheniformis ATCC 14580]
gi|52001926|gb|AAU21868.1| putative lytic transglycosylase YomI [Bacillus licheniformis ATCC
14580]
gi|52346587|gb|AAU39221.1| hypothetical protein BLi00261 [Bacillus licheniformis ATCC 14580]
Length = 255
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 2/169 (1%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ TV V +K+ + + Q + + A+ + K+ +D+L+ A
Sbjct: 62 DDTKTVAVVNDEKITGKDYNSVLSTAQMQYQQTGQDPTSKDAAQ--QIKKQAIDSLIGQA 119
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ Q + G +A + ++ S + + F V + L + T+
Sbjct: 120 LITQEADKKGYKASEKEIEKQLDESKKQYKNEQDFEEAVKKAGLNMNTLKSDIADSIKTE 179
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
++ V + A + + + +
Sbjct: 180 KYIDKELPTDQVTDKEIKDYYDQFAAQQKDSGQKNTPAFDDVKQQIQDM 228
>gi|167646489|ref|YP_001684152.1| SurA domain-containing protein [Caulobacter sp. K31]
gi|167348919|gb|ABZ71654.1| SurA domain [Caulobacter sp. K31]
Length = 452
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 36/140 (25%), Gaps = 16/140 (11%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
S V + + + + + + L+++ L +L+
Sbjct: 57 SESVAAVVNDDIISSYDLMQRMRLL------MVTSGLQPTQENLPQLEQEALRSLIDEHV 110
Query: 99 LDQF------IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
Q + I + + V +I K N + +L +G+ +
Sbjct: 111 QMQELRRVEKAQKITIISTDKEVEEQIEDI----AKGNNLTGQQLTQQLRAQGVGIDTWK 166
Query: 153 DHYTKMLSRTDVVGMFVGGM 172
S + G
Sbjct: 167 AQIRADSSWQAWISGRYGSR 186
>gi|197123566|ref|YP_002135517.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
K]
gi|196173415|gb|ACG74388.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
K]
Length = 590
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 55/583 (9%), Positives = 126/583 (21%), Gaps = 77/583 (13%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ V + Q V + + +K G + K +L L+
Sbjct: 73 TQTPVARIDDQVVRLAELQEALATTHD--ERKAGAATAPDF-------KAVLQRLIDSRL 123
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
L ++GL +P + F L ++ + + +
Sbjct: 124 LIMEAREMGL-----------DEAPEVKEQLTVFKDVTLRQTLQQQVTQDVKPDALEVER 172
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + V V + A + + A+ S
Sbjct: 173 VYKESVRRWKVRSLLFQKEEDAAAVKPALAGGKGFVELAKQLVAEKKAEGSGEP------ 226
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ + + + LQ K + +
Sbjct: 227 ----------------EVLPPDQTLPVVTTALQRLQKGQATPPLKLQKGFAILYVEDIVY 270
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
A A + + D + + ++ A
Sbjct: 271 PDDPAKRAEAEKASVDRQSGQVLTAFRKELDRKYVKIDEALLRKINFDAPKPGFAVLVKD 330
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLAL 397
I G V+++ + F + + R+ K + +
Sbjct: 331 KRPIVRIAGEAPITVADLANAVGEKFFHGVEKPQQEKRVDKLKRPRLDGLIYKRVFTKEA 390
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ S + G V+ V + K+ L + +
Sbjct: 391 RVRKLDQSEEYLRAVEEYENSLVFGTFVQRVLVPDVSLKDDDLRAYYDGHRDEFTAAPL- 449
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
++ + + + E ++ + L+ + EG+
Sbjct: 450 --------YRLDQLAFPDMKG-------------AQRATERLARGTDFKWLKANAEGQLP 488
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
K D + S V + G YVV V+
Sbjct: 489 PA---------QRALDFEGQLLSAKGLPEDLAGALASAQVGDYRLHQGPRGQGYVVQVVS 539
Query: 578 NSKV---GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + K L + A L+ + +
Sbjct: 540 RTDPQVQPFEEAKPDIQKKLFGQALNRAVTDWAAKLRDAHRIE 582
>gi|323526035|ref|YP_004228188.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1001]
gi|323383037|gb|ADX55128.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1001]
Length = 259
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 41/119 (34%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G +F ++ K + +D ++ K + +
Sbjct: 142 EQQAKDLIAKI-KGGASFEELAKQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+ + + +V + + ++ + Q + ++ L + L+ +
Sbjct: 201 QMSDTPVHTQFGWHIIRVDDVRSITPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259
>gi|187923910|ref|YP_001895552.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phytofirmans PsJN]
gi|187715104|gb|ACD16328.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phytofirmans PsJN]
Length = 259
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 41/119 (34%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G +F D+ K + +D ++ K + +
Sbjct: 142 EQQAKDLIAKI-KAGASFEDLAKQFSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+ + + +V + + ++ + Q + ++ L + L+ +
Sbjct: 201 QMTDTPVHTQFGWHIIRVDDVRNITPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259
>gi|91200802|emb|CAJ73856.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 424
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 10/173 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ + SV +K+ L +++ L+K+I + LV+ A L
Sbjct: 142 NKIIASVNEEKILRKDLDK----ILDRFRKQVPPGAIPS------LEKQITEQLVTQAIL 191
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
QF+ + GL+ V EI + K+ L +G N E
Sbjct: 192 RQFVREKGLDVADDVVNNEINKMRENIAKNPAAEGKTLEQFLEIQGSNIDELSTAIRMSA 251
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ V V N + F E + +I++ + + D A
Sbjct: 252 ALDAYVTNNVDDKTLENYFIKNINEFTGEEVTASHILIGTKGMKEQEDLDKAR 304
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/223 (13%), Positives = 64/223 (28%), Gaps = 13/223 (5%)
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ I++ L +++G + + ++ + D T+
Sbjct: 212 NKMRENIAKNPAAEGKTLEQF----LEIQGSNIDELSTAIRMSAALDAYVTNNVDDKTLE 267
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+Y I E + K K + ++ +K + E G NF
Sbjct: 268 ----NYFIKNINEFTGEEVTASHIL--IGTKGMKEQEDLDKARAKIESIKKELDN-GANF 320
Query: 518 RDIGKNLGA-SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
++ K T + + FS V V P++ Y + V
Sbjct: 321 AELAKKYSECPTGKTGGELGSFPRHGVMVETFANAAFSTEVGKV-SEPVKTEFGYHLIYV 379
Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
TN D + + + + +I L+ V ++
Sbjct: 380 TNHAPAKDVSFDAVKDTVREKLVAIEMGDLINDLRDNAQVEIN 422
>gi|218289330|ref|ZP_03493564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus
acidocaldarius LAA1]
gi|218240436|gb|EED07617.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus
acidocaldarius LAA1]
Length = 314
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 48/154 (31%), Gaps = 25/154 (16%)
Query: 17 FLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
F+ ++ G+ + G S V VGR + + G
Sbjct: 10 FVGAAAGALVVGGVWFGTYAAHGGGSVVAMVGRTPITRQELAQQSEAYAGSAM------- 62
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
L+ L++ A ++Q + A + ++ + ++ S
Sbjct: 63 --------------LEELIANALIEQAAAKQHITATDAEINQQLTAIEM---QNGITSDV 105
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
S LA+ + + +++D + + + V
Sbjct: 106 QLNSLLAQNHMTKAQFLDQIRDNILASKLAEAQV 139
>gi|193214030|ref|YP_001995229.1| SurA domain [Chloroherpeton thalassium ATCC 35110]
gi|193087507|gb|ACF12782.1| SurA domain [Chloroherpeton thalassium ATCC 35110]
Length = 439
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/186 (11%), Positives = 51/186 (27%), Gaps = 16/186 (8%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+ + + L +L + + V VG + + S N
Sbjct: 1 MINKL-----GKIGFALLFMLALAGSFSKPAS--AQEMLDGIVAVVGDEAILKSDVDN-- 51
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ L +I + GL K++ L++ L + + V G +
Sbjct: 52 QAMLYAYQNQIN-------LNTPGLWKEVFTALINQKILLMKAKLDSITVSSEEVDGLVE 104
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ F + + + + + + + ++ + SN +
Sbjct: 105 QRIAFLRERLRTDEAIVETFGKSIDMLRVDLREEIKSQRLVEELQRQHFSDLTVSNEEVV 164
Query: 181 QAKRFY 186
Y
Sbjct: 165 DFYNTY 170
>gi|78357081|ref|YP_388530.1| hypothetical protein Dde_2038 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78219486|gb|ABB38835.1| conserved hypothetical protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 335
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/193 (8%), Positives = 49/193 (25%), Gaps = 5/193 (2%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+ + +I + V V +V V + L +S V +
Sbjct: 5 IAAVVAACVIMAAAGCKDDVEQQGVVATVNGSPVYLQELEARYD--LDHLSWSGAMVPSV 62
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
++ R L L+ ++Q +E GL+ V + +F +
Sbjct: 63 DQLRKDY--GSALAGLIVQRLVEQDLEKSGLDVTDEEVLKAEEEVRADYPPG-EFEKVLV 119
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ + + + ++ ++++ +
Sbjct: 120 EDYIDLATWRYMLRQHLQREKFRSEILRPAISLSFEEAEDYYKAHLSDFYLPERINFLYI 179
Query: 198 NNRHVPAIADPSN 210
+ + +
Sbjct: 180 SGPDRGTVEKARD 192
>gi|152980669|ref|YP_001353234.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Janthinobacterium
sp. Marseille]
gi|151280746|gb|ABR89156.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Janthinobacterium
sp. Marseille]
Length = 259
Score = 57.2 bits (135), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/175 (10%), Positives = 55/175 (31%), Gaps = 10/175 (5%)
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK--------DWKTVKTAEEVSSKA 503
K+ + + + + K ++ + + ++ E +A
Sbjct: 86 KNQIEIARQSILIRALVADYLKKNPVKDADIKAEYDRFKAQASDKEYHARHILVEKEDEA 145
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKC 562
++ + K G F D+ K + +D F + + +
Sbjct: 146 KAIIAKL-KGGAKFEDLAKASSKDPGSAANGGDLDWASPASFVKPFSDAMVALQKGQLSE 204
Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P++ Y V K+ + + + ++ + + + + L + L+S+ +
Sbjct: 205 TPVKTQFGYHVIKLDDVRTAKIPTLEEVKPQIAESLQQKKLQAFQQQLRSKAKIQ 259
Score = 41.4 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 21/104 (20%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L L V + ++ + V + +P S KQ Q
Sbjct: 8 LLAALIVSASLPAMA---------QNLAVVNGKPIPSSRADVMIKQMTSQGQQ------- 51
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ L + D L++ L Q + +GL A V +I
Sbjct: 52 ----DTPELRAMVKDELINREILIQEADKLGLGA-QADVKNQIE 90
>gi|301165393|emb|CBW24964.1| putative peptidyl-prolyl cis-trans isomerase [Bacteriovorax marinus
SJ]
Length = 271
Score = 57.2 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 15/159 (9%), Positives = 51/159 (32%), Gaps = 1/159 (0%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ + + + + E ++A ++ K+ + F ++
Sbjct: 114 ADVDKYYKDHPEYRTAHILFRVRTNPEKEENEAALNQALKVYNTLKKKPELFSELANKFS 173
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
S N + + + + G + P++ Y + KV K
Sbjct: 174 QSSTAPNGGDMGFQPAIRLAPEYFNAI-KGKADNFITPPVKTQFGYHIIKVMAVKSVKSI 232
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + +LD+ + L+++ ++ +++ ++
Sbjct: 233 NNALYKKIVYDQKRDAILDNYFSELRAKANIKINEETLK 271
Score = 38.3 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 9/86 (10%), Positives = 29/86 (33%), Gaps = 13/86 (15%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V +V + S ++++ L +S +K+L+++++
Sbjct: 22 KDPVVATVDGISIKKSELEKTYQENLMFVS------------DKRVTRQKVLNDIINRKL 69
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPL 124
+ + L+ + V ++
Sbjct: 70 GIKRAKKANLD-NDPIVKQKMEDIMY 94
>gi|261823065|ref|YP_003261171.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium wasabiae
WPP163]
gi|261607078|gb|ACX89564.1| Peptidylprolyl isomerase [Pectobacterium wasabiae WPP163]
Length = 431
Score = 57.2 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/396 (10%), Positives = 107/396 (27%), Gaps = 55/396 (13%)
Query: 48 RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
V S + + +Q+ G + + L +I D L+ + Q + +G
Sbjct: 34 NSVVLESDVNSLLQSVKLN-AQQAGQQLPDD----ATLRHQITDRLIMDNIILQMAQKMG 88
Query: 108 LEADHGRVWGEIARSPLFHGK-----DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
++ ++ I + ++ +++ R I ++ I R
Sbjct: 89 IQVTDEQLDQAITNIAAQNRMSLDQLKSQLAYEGLNYNTYRNQIRKEMLISEVRNNEVRR 148
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
V + + + +Q N S I L D + + T ++ +
Sbjct: 149 RVTVLPQEVDTLAKQIANQTGENDELNLSHILIPLPENPTQQQVDEAENLATSLVKQISE 208
Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-------------- 268
+ + + E+ + + + +
Sbjct: 209 GADFGKLAITYSSDSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHIL 268
Query: 269 ---------------IRTVEQLVFPNQKEADEAFQSLKKGKKFIQ--------------L 299
++ ++ K Q L
Sbjct: 269 KVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQAKLADVAQQIKNGSTDFAAQAKLL 328
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+++ G + LG S + D + D++ KKG+ + +H SFG+ + + + +
Sbjct: 329 SQDPGSANQGGDLGWASP-DMYDPAFRDALL-KLKKGEISQPVHSSFGWHLIQLLDTRQV 386
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
+ ++ A E ++
Sbjct: 387 DKTDAAQKEQAYRMIFNRKFAEEAQTWMQEQRAAAY 422
Score = 40.6 bits (92), Expect = 0.83, Method: Composition-based stats.
Identities = 19/239 (7%), Positives = 61/239 (25%), Gaps = 7/239 (2%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ E + + +IS + + + G+ + LF
Sbjct: 188 TQQQVDEAENLATSLVKQISEGADFGKLAITYSSDSQALKGGQMGWGKLQEIPTLFAERL 247
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
+ + +++ + E + V T + +K
Sbjct: 248 TQAQKGQVVGPIRSGVGFHILKVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQAKL 307
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKC 562
+ + +F K L + NQ + + + +
Sbjct: 308 ADVAQQIKNGSTDFAAQAKLLSQDPGSANQGGDLGWASPDMYDPAFRDALLKLKKGEISQ 367
Query: 563 FPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P+ + + + ++ + +K++ + + + + ++ V V
Sbjct: 368 -PVHSSFGWHLIQLLDTRQVDKTDAAQKEQAYRMIFNRKFAEEAQTWMQEQRAAAYVKV 425
>gi|302338344|ref|YP_003803550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
smaragdinae DSM 11293]
gi|301635529|gb|ADK80956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
smaragdinae DSM 11293]
Length = 511
Score = 57.2 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/196 (12%), Positives = 58/196 (29%), Gaps = 8/196 (4%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ LV++ V F+ S GS S + + + N ++ M++++
Sbjct: 31 FSVFILVLIVVTFVGAPAISHFGSQRGSIVFGSWNGEPIEYRP-DNYLSRQRDMVAKRYQ 89
Query: 73 FVVNSERARS------VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+ + + + + V + + + + GL+ RV + +
Sbjct: 90 AMFQQSQGQDNIDWQLFQVWNGAFELTVIHSAIMEEAQKSGLQVSDERVDRALTYYEGYW 149
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
++ KFS + + + + E + + Y V LL A
Sbjct: 150 -ENGKFSPEAYRNTSSSEKFSVRNYYHESLIHQQWVSDVFSTHSSSAEKAFLLSLASPER 208
Query: 187 FENRSVDYIVLNNRHV 202
+
Sbjct: 209 NFRFVNWDLNSYPAEK 224
>gi|241668931|ref|ZP_04756509.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
philomiragia subsp. philomiragia ATCC 25015]
gi|254877463|ref|ZP_05250173.1| peptidyl-prolyl cis-trans isomerase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254843484|gb|EET21898.1| peptidyl-prolyl cis-trans isomerase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
Length = 470
Score = 57.2 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 51/169 (30%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + M +S + S+ + ++ L +L++ + L
Sbjct: 53 NKTVAIVNSKPITSFELDQEVAKFEAM------NPNSSFHSDSLQIRREALQDLIAQSVL 106
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ + Y + L
Sbjct: 107 LQLAERNNIIISNQQLDAAIKDIAAKNGV----SVESLKLNVEASGMSFESYKKRIREQL 162
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + + +
Sbjct: 163 MVSQLQQQAISQQVYVSPEEIQKYIKKHQEQFDREMAPIKLYTLKNLIV 211
>gi|227357298|ref|ZP_03841655.1| chaperone SurA protein [Proteus mirabilis ATCC 29906]
gi|227162561|gb|EEI47550.1| chaperone SurA protein [Proteus mirabilis ATCC 29906]
Length = 445
Score = 57.2 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 12/227 (5%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS---TVVSVGRQKVPFSSFINSWK 61
+RK + K + ++ + G + + + + V V S +
Sbjct: 1 MRKTHNGKLMKNWKTLVIGLMITVGAATSTTTFAAQELNRVSAIVNNGVVLESDVNRMLQ 60
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
Q E L ++IL+ LV + Q + + ++ V I
Sbjct: 61 TV-----QMNAKNAGQEMPDEQVLRQQILERLVMDNIILQMAQQMQIDIPEAAVESTIQG 115
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+N + + RLA +GI +Y K + +V V
Sbjct: 116 IAA----ENNLTLEQLKKRLAADGIAYNDYRQDIRKEMMLAEVRNNEVRRRITILPQEVD 171
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ E+++ I LN H+ + + + N +
Sbjct: 172 SLAKQIESQASQSIDLNLSHILIPLSENPSPAEIEKAQQVVNRIKNQ 218
Score = 42.5 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 17/212 (8%), Positives = 60/212 (28%), Gaps = 7/212 (3%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D + A+I + + + G ++ ++
Sbjct: 235 DPQALNGGNMGWASIDELPTIFAKQLANAQKGEIVGPLQSGVGLHIIKVNDIRGASKTVS 294
Query: 479 LEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ EV + + E+ +K ++ + +F D K + + +
Sbjct: 295 VTEVKARHILLKSSPIMNDEQAYAKLQKISADIRSGKISFADAAKEYSEDPGSALRGGEL 354
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISY 593
+ + + + P+ + + + ++ + K++
Sbjct: 355 GWSMPDIYDPAFRDALMRLNKNELSQ-PVRSNFGWHLIELEDTRSVDKTDAANKEQAYRL 413
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV-HDNLIQ 624
L + + + + L++ V + ++N
Sbjct: 414 LFNRKFNEEVQNWMQELRAGAYVKIMNENNAN 445
>gi|91974780|ref|YP_567439.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB5]
gi|91681236|gb|ABE37538.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB5]
Length = 305
Score = 57.2 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/158 (12%), Positives = 52/158 (32%), Gaps = 6/158 (3%)
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-----VSSKANQLVLEYSKEGKNFRD 519
+ ++ + +++V D K + S + V E K+G +F +
Sbjct: 121 LLAVEGKNATTNDAMKKVYEDAAKQISGEQEVHARHILVESEDDAKAVAEELKKGADFAE 180
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+ K ++ + + + + F+ + P+++ + + KV
Sbjct: 181 LAKKKSKDPGASDGGDLGFFTKEQMVPEFSAVAFAMEPGKI-SDPVKSQFGWHIIKVEEK 239
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ D+ + Q + + +A L+ V
Sbjct: 240 RSRKPPTFDQVKPQIEQYVTRKAQADYVAQLRQAAKVE 277
>gi|187734800|ref|YP_001876912.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia
muciniphila ATCC BAA-835]
gi|187424852|gb|ACD04131.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Akkermansia
muciniphila ATCC BAA-835]
Length = 384
Score = 57.2 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 45/155 (29%), Gaps = 3/155 (1%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ +V + + + ++ + + K I+++LV L
Sbjct: 83 NRIAATVNGRPITANEVSVRLMPIGAQLAAQYPKQGPEFYKQLALAKKNIIEDLVERELL 142
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
E +G + E+ R+ L F+ L+ G+ + + + K L
Sbjct: 143 RNEFEGMGGVIRDSLIDQEVNRTIL---TTFNGDRSAFLKNLSLSGMTIRAFREMTKKQL 199
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ P Q + + + D
Sbjct: 200 QVQIMRASKYDQEIPPTPEEIQQEYESTKEQYRDL 234
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 36/126 (28%), Gaps = 5/126 (3%)
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
E + A + E + F ++ K L + E + + +F
Sbjct: 258 EVQLNLAELIAKEIKSKNATFEEMAKRYSKDLYAEKGGDWPVTERSTLSPESAAIIFGAQ 317
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL----TQMMNKDLLDSVIAYLKS 612
+ P+ + + + V ++ P + + + + L+
Sbjct: 318 PGEI-IGPLVDSTGFTIVLVEKKELAPPPPLSAIKEQIDIMARNKRSNERYKKWVERLRK 376
Query: 613 QYSVTV 618
+ V +
Sbjct: 377 KAIVKI 382
>gi|209517045|ref|ZP_03265893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
H160]
gi|209502576|gb|EEA02584.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
H160]
Length = 259
Score = 57.2 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 16/146 (10%), Positives = 48/146 (32%), Gaps = 2/146 (1%)
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
R V +++ + +A L+ + K G +F D+ K +
Sbjct: 115 EITARYNALVKDAGGQEYHLHHILVDNEQQAKDLIAKI-KAGASFEDLAKQYSKDPGSGK 173
Query: 533 QINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
+D ++ K + + + P+ + + +V + + ++
Sbjct: 174 NGGDLDWSDPKAYVPEFADAATHLQKGQMTDTPVHTQFGWHIIRVDDIRAVTPPPLEQVR 233
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + Q + ++ L + L+ +
Sbjct: 234 AQIVQQIQQEKLQAFEENLRKNARIQ 259
Score = 37.9 bits (85), Expect = 5.4, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S +Q + Q + L + + + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADALIQQLVHQGQQ-----------DTPQLQQAVREELVNREILM 71
Query: 101 QFIEDIGL 108
Q GL
Sbjct: 72 QEALRRGL 79
>gi|15606786|ref|NP_214166.1| hypothetical protein aq_1695 [Aquifex aeolicus VF5]
gi|2984018|gb|AAC07562.1| putative protein [Aquifex aeolicus VF5]
Length = 296
Score = 57.2 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 18/106 (16%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
I +++ F+ F+ S V V KV + I+
Sbjct: 5 ILVILFFIGFIF------------SQIVAEVDGYKVTKEELDTLFHVFWKRITHLSSAKP 52
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
E R +D V+ + + + +G+E + I +
Sbjct: 53 TQEDKRIFLID------YVADLLILKEAKKMGIEVSEKEINDFIRK 92
>gi|307729669|ref|YP_003906893.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1003]
gi|307584204|gb|ADN57602.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1003]
Length = 259
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G +F ++ K + +D ++ K + + +
Sbjct: 142 EQQAKDLIAKI-KGGASFEELAKQFSKDPGSGKNGGDLDWSDPKAYVPEFANAATHLQKG 200
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+ + + +V + + ++ + + Q + ++ L + L+ +
Sbjct: 201 QMSDEPVHTQFGWHIIRVDDVRNITPPPLEQVRAQIVQQIQQEKLQAFEEGLRKNAKIQ 259
>gi|170747170|ref|YP_001753430.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
radiotolerans JCM 2831]
gi|170653692|gb|ACB22747.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
radiotolerans JCM 2831]
Length = 311
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 49/150 (32%), Gaps = 5/150 (3%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+ D+ ++ + + + + + E +K + K G++F +
Sbjct: 150 EAEHAIYDQTVKLMKPEEEVHARHILVDNEAEAK---KIAARIKGGEDFAKVAAEASKDP 206
Query: 529 -LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ + D + F+ V PI+ + V KV + P
Sbjct: 207 GSKAEGGDLGWFTKERMVPDFANAAFAMKAGQV-SDPIKTQFGWHVIKVEEKRTKPQPTF 265
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
D+ + Q + + +I L+S+ +
Sbjct: 266 DELKEQIDQHLIRKAQQDMILKLRSEAKIE 295
>gi|295694759|ref|YP_003587997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus tusciae DSM
2912]
gi|295410361|gb|ADG04853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus tusciae DSM
2912]
Length = 305
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/302 (8%), Positives = 82/302 (27%), Gaps = 17/302 (5%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ +A V L + G S V + +V + +K + +I+ +
Sbjct: 4 SRLAGALFVTLLAILALAGCGS-------SDVVATFDGGQVHRAELDKQFKLQRLLIAPQ 56
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGA-TLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ ++L + LDQ + G+ + +A+ +
Sbjct: 57 YP--------DTPQNRLEVLQQYIVMHDILDQKAKQEGITVSDKELADTVAQYRQQLIQY 108
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+ D ++A G+ + + + + + +
Sbjct: 109 VYGNADALNKKMAELGLQDNDLQALARDDILAQKYFAKHLSVSDEEIQAYYKDHPADYTI 168
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
V +I++ + + + + K K L + +
Sbjct: 169 AKVAHILVKTKQEAEQVEARILKGESFAQIAK-EVSLDPSKDQGGELPEGPLSQWVGPFQ 227
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
+ ++ + + + + ++ + + +K ++ + ++ D
Sbjct: 228 DAAMKLPIGQISDPVQTQFGWHILRVDSRRVEPLSQVKDQVKNKVMQMKEQQWFNQAKQD 287
Query: 310 IS 311
Sbjct: 288 AH 289
>gi|94497694|ref|ZP_01304262.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingomonas sp.
SKA58]
gi|94422911|gb|EAT07944.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingomonas sp.
SKA58]
Length = 462
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/143 (11%), Positives = 38/143 (26%), Gaps = 14/143 (9%)
Query: 32 DALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
D V V + + + + G V+ E L
Sbjct: 58 DVTVFGQSDPNVRKATAIVNGRIITGTDVDQRLALIITA----NGGKVSDEE--KERLRV 111
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++L NL+ Q ++ + R + + S F + L +G +
Sbjct: 112 QVLRNLIDETLQIQEAAANDIKIAPEEIEQSYQRVAA----NFRKSPTEFDAYLRSQGSS 167
Query: 148 EKEYIDHYTKMLSRTDVVGMFVG 170
L+ + ++ +
Sbjct: 168 AASIKRQIEGELAWSRLLRRNIQ 190
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 22/289 (7%), Positives = 66/289 (22%), Gaps = 14/289 (4%)
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
++ ++ + + + S K ++ S + + + +
Sbjct: 181 WSRLLRRNIQPFVNVSEDEVKSVIDRLNAAKGSDEYRIGEIYLSATPENQAQIVANARNI 240
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ + + A G L + + +
Sbjct: 241 IQQIQQGGSFQAYARQFSEASTAAVGGDLGWIRP--AQLPSELAQAAAEMQVGQIAGPIE 298
Query: 458 LPDGSYMWVQIKESIPARDRKLEEV----LTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
G + + + + + V T K + ++ K
Sbjct: 299 TVGGVSIIYVMDKRKVLTADPRDALLSLKQLSVLFPKGTTKEQAGAKAAEFAAAVKEIKG 358
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
+IG +GA ++ + + D + + V V
Sbjct: 359 CGQANEIGARIGADVVDNDNVKVRD-----LPPQLQEILLNLQVGETTPPFGSIEDGVRV 413
Query: 574 FKV---TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
V + D+ ++ L + + L+ + +
Sbjct: 414 LIVCGRDDPASANAPNADQIMAQLEEERVNKRARIYLRDLRRDAVIDYN 462
>gi|304410420|ref|ZP_07392038.1| SurA domain protein [Shewanella baltica OS183]
gi|307304512|ref|ZP_07584262.1| SurA domain protein [Shewanella baltica BA175]
gi|304350904|gb|EFM15304.1| SurA domain protein [Shewanella baltica OS183]
gi|306911914|gb|EFN42338.1| SurA domain protein [Shewanella baltica BA175]
Length = 434
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 10/152 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
++F F + L + V + V S N ++ + S+
Sbjct: 7 LIFALFALAISQPTLAAPQPLDRVAVQINDGIVLESEITNMIDTVKAN-AKTANQSLPSD 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
A L ++++ L+ Q + IGL ++ I K S
Sbjct: 66 SA----LRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KMSVAQMQ 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ EG++ +Y + + ++ ++ + V
Sbjct: 118 QKIESEGLSFSQYREQLREEITLGEIQRIQVQ 149
Score = 38.3 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 21/287 (7%), Positives = 77/287 (26%), Gaps = 10/287 (3%)
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ + P S ++ ++ + K + + +S E
Sbjct: 147 QVQRRIQVSPQEITSLVKLIQEQGMKDVEYKIGHILIDVPNNPTSEQLESSSKRANIVLE 206
Query: 409 KIVSID------LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
++ S + + G + LF
Sbjct: 207 RLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEMPTLFAEVINGAKTGDIIGPIKSGAG 266
Query: 463 YMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ ++I ++ + +++EEV + + + + + Q + + F D+
Sbjct: 267 FHIIKIMDARGLQTKEIEEVRARHILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLA 326
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ + + + +Q + P + + ++ +
Sbjct: 327 RQYSEDPGSATKGGELGWAEPSIYVPEFAQTLNSLKTDQISEPFRTTHGWHITQLEERRK 386
Query: 582 GPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
++ ++ + + + L + + ++S + + R
Sbjct: 387 TDATDQFNSNRAHQLIFRRKFNEELQNWLDEMRSDAYIEIFQPETNR 433
>gi|261856056|ref|YP_003263339.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
neapolitanus c2]
gi|261836525|gb|ACX96292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halothiobacillus
neapolitanus c2]
Length = 325
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 46/133 (34%), Gaps = 2/133 (1%)
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFG 545
+K + +A+ ++ + G F + K + Q + +
Sbjct: 167 TTQYKAAHILVKTKEEADAIIKQLD-SGTPFDQLAKEKSQDPGSAKQGGELGWFDADQMV 225
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + V + P+++ + V K+ ++++ + L + ++
Sbjct: 226 PEFSAAVEKLKKGEITQQPVKSQFGWHVIKLEDTRLAQPPTFAELKPQLETQYRRAAIED 285
Query: 606 VIAYLKSQYSVTV 618
+I L+++ + +
Sbjct: 286 LIKKLRTKAKINI 298
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/201 (15%), Positives = 77/201 (38%), Gaps = 5/201 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ K + + + K+++++ ELQ EY + + Y ++
Sbjct: 118 KQIKTKAQIQNAVDNQLANDYLSDYLSKMKVTDAELQPEYNQFVKGYPKTTQYKAAHILV 177
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLA 333
++EAD + L G F QLA+E+ + LG F + + + ++ L
Sbjct: 178 KTKEEADAIIKQLDSGTPFDQLAKEKSQDPGSAKQGGELGWFDADQMV-PEFSAAVEKLK 236
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
K + FG+ + + + + + +F E+K + Q R + +K+ + +
Sbjct: 237 KGEITQQPVKSQFGWHVIKLEDTRLAQPPTFAELKPQLETQYRRAAIEDLIKKLRTKAKI 296
Query: 394 FLALGTSMDEISRREKIVSID 414
+ + + + E +
Sbjct: 297 NIMAVPATLQTAPAEASKPSE 317
>gi|121956507|sp|Q7MP84|SURA_VIBVY RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
Length = 428
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 10/139 (7%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + L+ G S V V V + S + K + G +
Sbjct: 7 LLLGMLVTG-SAVSAPVELDKVAVIVNDGVILQSDIDTATKTLRANAKK-SGQALPDADV 64
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L+++I+D L+ Q + IG+ D R+ I + + D +
Sbjct: 65 ----LNEQIVDKLIIDTLQTQEADRIGVRIDDTRLNQAIEEIARNNNQTI----DELSAA 116
Query: 141 LAREGINEKEYIDHYTKML 159
+A EG++ +E+ + K +
Sbjct: 117 IASEGVSYEEFREQIRKEM 135
>gi|89891030|ref|ZP_01202538.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
bacterium BBFL7]
gi|89516674|gb|EAS19333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteria
bacterium BBFL7]
Length = 658
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 65/655 (9%), Positives = 170/655 (25%), Gaps = 75/655 (11%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
T L++ + T++++ +F+ + + L ++
Sbjct: 4 TKRFFTILLLFISSIAVA-------QELEDKTLLTIDGNSYDAGTFMRVYLKNLDIVQDD 56
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
+ + LD + ++GL+ + E+ +
Sbjct: 57 SQKDI-----------ENYLDLYIDYRLKLMQAYELGLD-NKESYKKELNNYRQSLAQAY 104
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+V L RE + K+ + + +L + ++ N +
Sbjct: 105 LTDTEV-TESLVREAYDRKKREVNASHILVKVGPGDTPHDTLKAWNKINSIKNELDNGAD 163
Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
+ A + + + Y A + + I
Sbjct: 164 FSQLARTKSEGPSAGNEGKLGWFSVFRMVYPFENAAFNTPVGKHSDIFRTDFGYHIVKVF 223
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS-- 308
++ A E + + R + K + ++ L++ KF +LA E +S
Sbjct: 224 EDRPARGEVTVSHIMTFDARDASE--KTAAKRIQDVYKQLQESGKFEELAREFSDDMSSA 281
Query: 309 --DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP--SFTVSF 364
L F + D F L +KG ++ FG+ I + P S+
Sbjct: 282 SRGGKLDRFGTGGLNAPVFEDIAFGLEEKGSYSAPFKSKFGWHIVKLIEKHPVGSYEELA 341
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALG---------------TSMDEISRREK 409
+K+ I R K ++ + + T+ + K
Sbjct: 342 PSLKEKIRKSPRARKITDSFNKGLREKYNVKRSEEVLKVLNETITDSILTNSWQFDPSIK 401
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ-- 467
+ + ++ + +++ ++D + K + + +
Sbjct: 402 TAGLKMFSINDKDITYADFYKDVVNRQKKDFTNYASREDKIKKIYYDFIDKSIAAYYDRN 461
Query: 468 -IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN---------------QLVLEYS 511
+ E+ E + D K + + + ++
Sbjct: 462 LVNENKDFAFIYDEYKEGLLLFDLLETKIWNKAKEDSLGQQAYYDLHTDKYQWKRRVDII 521
Query: 512 KEGKNFRDIGKNLGASLLT-------TNQINRMDNENKFFGYDGISQV-------FSGPV 557
++ + L+ + N + + F
Sbjct: 522 LTQNTTEEVATQVQQLLMKGTSREEIKERFNIDGRTKVMMSNGVVEETYNRLPDNFEIKE 581
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
+ + E Y V V + ++ + + L ++ L++
Sbjct: 582 GVSSIYYDEKTGFYKVILVKEILEPTQKTLEEARGAVINDYQQQLEKDWMSSLRN 636
>gi|326423746|ref|NP_759646.2| survival protein SurA [Vibrio vulnificus CMCP6]
gi|121956501|sp|Q8DED4|SURA_VIBVU RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|319999108|gb|AAO09173.2| Survival protein surA precursor (Peptidyl-prolyl cis-trans
isomerase surA) [Vibrio vulnificus CMCP6]
Length = 428
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 10/139 (7%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + L+ G S V V V + S + K + G +
Sbjct: 7 LLLGMLVTG-SAVSAPVELDKVAVIVNDGVILQSDIDTATKTLRANAKK-SGQALPDADV 64
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L+++I+D L+ Q + IG+ D R+ I + + D +
Sbjct: 65 ----LNEQIVDKLIIDTLQTQEADRIGVRIDDTRLNQAIEEIARNNNQTI----DELSAA 116
Query: 141 LAREGINEKEYIDHYTKML 159
+A EG++ E+ + K +
Sbjct: 117 IASEGVSYAEFREQIRKEM 135
>gi|189345572|ref|YP_001942101.1| SurA domain [Chlorobium limicola DSM 245]
gi|189339719|gb|ACD89122.1| SurA domain [Chlorobium limicola DSM 245]
Length = 437
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/200 (8%), Positives = 47/200 (23%), Gaps = 11/200 (5%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
V ++ + +S + V +G + V S +
Sbjct: 3 KVMTTVCALILLCMPF--ISGTAVAAIADRIVAVIGNEVVLQSELDERVLMTHMQYPESK 60
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
G L +K+L++L+ + + D + G +
Sbjct: 61 GDK---------TLPEKVLNSLIDQKVILAKAKIDSTGIDDAALEGLVGERMKVLASRFS 111
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
++ + +E + + G+ ++
Sbjct: 112 SREEMESRFGKSSLVIRRELRQEIKNQQLIESLRRKKLSGVTVTHEESMAFYEANKSRLP 171
Query: 192 VDYIVLNNRHVPAIADPSNA 211
V ++ + D +
Sbjct: 172 VIPEGVSVSQILKYPDVTAE 191
>gi|307826208|ref|ZP_07656418.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
tundripaludum SV96]
gi|307732742|gb|EFO03609.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacter
tundripaludum SV96]
Length = 343
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 47/162 (29%), Gaps = 10/162 (6%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAE--------EVSSKANQLVLEYSKEGKNF 517
++ I A E+ + K E + ++A +L+ E K G +F
Sbjct: 119 ADLQNFIKANPVTDAEIKAEYDSKVAAEKGTEYKARHILVKTETEAKKLITELDK-GADF 177
Query: 518 RDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
+ + + V + P++ + V
Sbjct: 178 AKLANKNSLDAKESQNGGDLGWFSAAQMVAPFSEAVAALEKGKYTKEPVKTQFGFHVILK 237
Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+S+ + LT + + + +I L+ Q V +
Sbjct: 238 EDSRPVTPPPLEAVKEQLTPFLQRKKVQEMIETLRKQAKVEI 279
>gi|262378424|ref|ZP_06071581.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
SH164]
gi|262299709|gb|EEY87621.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter radioresistens
SH164]
Length = 441
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 48/404 (11%), Positives = 97/404 (24%), Gaps = 53/404 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+T K F + +I S F+ V V + S I + +
Sbjct: 7 KTKYFKQFFKATALALVISS-SMQSFAQPVDEVVAIVDNGVILKSDLIQGVAELKHQLET 65
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI---------A 120
+ V L+K+ LD L+ + + ++ D + +
Sbjct: 66 QKREVPP-----QAFLEKQALDQLILRQAQLEQVRRYNVKPDEKSLNEAVMKVASQSGTK 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--------- 171
F K + + + S R + +++SR + V
Sbjct: 121 TLEAFQQKLDAMAPGTYESLRNRIAEDLAINRLRQQQVMSRIKISDQDVENFLKSPQGQA 180
Query: 172 ------MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
+ + K+ + I S + +
Sbjct: 181 ALGSQVHVIHARITPKDKQTANVESVAQQVKNALNTSNDIQAISKQYSDTKVQVEGVDMG 240
Query: 226 APEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPEIRTVEQLVF 277
I L + + L+ K E+ ++
Sbjct: 241 FRSLADIPAELAARVSALPVGQTTELIPARDGVHVLKVLERKTSEQKALVPQYQTRHILI 300
Query: 278 PN---------QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
+ D + LK G+ F LA SLG S +
Sbjct: 301 QPSEVVSPENAKHMIDNIYNRLKAGEDFTVLASTFSTDTGSARDGGSLGWVSPGVMVPE- 359
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
+ G + FG+ I V++ + + +
Sbjct: 360 -FEEKMKSTPVGQVSAPFQTQFGWHILQVTDTRQQDMTEEYQER 402
Score = 44.5 bits (102), Expect = 0.060, Method: Composition-based stats.
Identities = 28/258 (10%), Positives = 80/258 (31%), Gaps = 13/258 (5%)
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
A K + V+ ++++ L + IS++ + + VD
Sbjct: 190 HARITPKDKQTANVESVAQQVKNALNTSNDIQAISKQYSDTKVQVEGVDM--------GF 241
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
++ L + DG ++ ++ + + + T
Sbjct: 242 RSLADIPAELAARVSALPVGQTTELIPARDGVHVLKVLERKTSEQKALVPQYQTRHILIQ 301
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNENKFFGYDGI 549
+ + E + + K G++F + + + + +
Sbjct: 302 PSEVVSPENAKHMIDNIYNRLKAGEDFTVLASTFSTDTGSARDGGSLGWVSPGVMVPEFE 361
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYLTQMMN-KDLLDSV 606
++ S PV V P + + + +VT+++ + +++ + + LDS
Sbjct: 362 EKMKSTPVGQV-SAPFQTQFGWHILQVTDTRQQDMTEEYQERMARQILGERQFETELDSW 420
Query: 607 IAYLKSQYSVTVHDNLIQ 624
+ L++ V + +
Sbjct: 421 LRELRANAYVEIKQPNLD 438
>gi|255657457|ref|ZP_05402866.1| putative foldase lipoprotein (late stage protein export
lipoprotein) [Clostridium difficile QCD-23m63]
gi|296449052|ref|ZP_06890842.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
gi|296262145|gb|EFH08950.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
Length = 331
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/194 (12%), Positives = 54/194 (27%), Gaps = 6/194 (3%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
++ L + ++ +S + S TV +V K+ F + + Q G +
Sbjct: 4 VITLVIAMILV-VSVTACNSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYGKDIWD 62
Query: 78 ERAR-----SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ ILD L++ + + L V GKD K+
Sbjct: 63 KEVEKGVKYKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEKSFKELKDAMGKDEKY 122
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ + E + +++ D + + F +
Sbjct: 123 KEQLKKLGIDDEFLRDQQEKDLAMQNYQSNFTKKTKISDEEMKKYYDTHKDEFKKDEVEA 182
Query: 193 DYIVLNNRHVPAIA 206
+I+L
Sbjct: 183 SHILLKTVDDNNKP 196
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/284 (11%), Positives = 77/284 (27%), Gaps = 3/284 (1%)
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
+ +I + K + + + +V + + L +++
Sbjct: 48 YKDSMEQTYGKDIWDKEVEKGVKYKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEK 107
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ K K + + +E+ L + + K Y
Sbjct: 108 SFKELKDAMGKDEKYKEQLKKLGIDDEFLRDQQEKDLAMQNYQSNFTKKTKISDEEMKKY 167
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
E +L V + K + + K + L+ K G++F + K
Sbjct: 168 YDTHKDEFKKDEVEASHILLKTVDDNNKPLSAKEKAEAKKKAEEALKEVKSGEDFAKVAK 227
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
++ + FS V +E Y + KVT+ ++
Sbjct: 228 KYSQDASASDGGKLGFFSRGQMVAEFEDAAFSMKKGEVSDL-VETQYGYHIIKVTD-RIN 285
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + K+ I L + V + +I +
Sbjct: 286 EQTSFEDAKETIKDQLLKNKYQEQIEKLTKEAKVEKDEKVINKI 329
>gi|210634928|ref|ZP_03298375.1| hypothetical protein COLSTE_02304 [Collinsella stercoris DSM 13279]
gi|210158557|gb|EEA89528.1| hypothetical protein COLSTE_02304 [Collinsella stercoris DSM 13279]
Length = 417
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/222 (12%), Positives = 68/222 (30%), Gaps = 20/222 (9%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS------------GSSTVVSVGRQKVPF 53
RK + KI LV + + ++ +S S +V +
Sbjct: 34 RKEKLSKTGKIVLVAIGIAAMLLSVSAMACSGVLNEVQSKEDYKLTGGVAATVNGVNIKE 93
Query: 54 SSFINSWKQELGMISQKIGFV---VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
S + ++ + + ++D++V L Q +D G++
Sbjct: 94 DSVTEQIMSMRQSAYESDKDWATYLSQQGMTPETYRENVIDSIVRQYLLVQAEKDYGIKV 153
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ + N D FV +++ G ++ Y+++ L++ + V
Sbjct: 154 TQEDLDKAWKE----AVEGNGGDEDAFVETISQFGFTKETYLENIKSSLAQQKLRE-KVA 208
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
G++ + A + D ++ D +
Sbjct: 209 GVKKPSDEDIVAYLNENLSTYNDARRSSHILFKVAEDATEEE 250
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 19/245 (7%), Positives = 67/245 (27%), Gaps = 17/245 (6%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
K+ ++ + + + + + G + + + L +
Sbjct: 147 KDYGIKVTQEDLDKAWKEAVEGNGGDEDAFVETISQFGFTKE----TYLENIKSSLAQQK 202
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
++ +Y+ + AR V +D + A+ V ++A
Sbjct: 203 LREKVAGVKKPSDEDIVAYLNENLSTYNDARRSSHILFK--VAEDATEEERAK-VEAEAQ 259
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
+++ + + F + N + ++ F + + +
Sbjct: 260 KVLDKLNAGEIEFAKAAEKYSEDGSAKNGGDVGWDKLTTFVTEYQDALSGLSDGQMSGL- 318
Query: 565 IENGLSYVVFK---------VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + K V++ P +D + + + +
Sbjct: 319 VKTTYGYHIIKCTGQFNVQTVSSIDEVPEGIRDAIAERIKTTAESEKYSEWLTEYTEKAD 378
Query: 616 VTVHD 620
+ +++
Sbjct: 379 IKINE 383
>gi|254247979|ref|ZP_04941300.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
PC184]
gi|124872755|gb|EAY64471.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
PC184]
Length = 260
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + D+ + + Q + + L + L+ Q +
Sbjct: 202 QMTDAPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260
Score = 44.1 bits (101), Expect = 0.077, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + ++ E++ Y++ + + ++ N+++A + +K G KF
Sbjct: 101 MIESFLKKNQPTDAEVKTRYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I V
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDAPVKTQFGWHIIRVD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+I+ F +VK IA Q+ K + ++
Sbjct: 221 DIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQ 256
>gi|319648995|ref|ZP_08003204.1| hypothetical protein HMPREF1012_04243 [Bacillus sp. BT1B_CT2]
gi|317388989|gb|EFV69807.1| hypothetical protein HMPREF1012_04243 [Bacillus sp. BT1B_CT2]
Length = 255
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/169 (11%), Positives = 51/169 (30%), Gaps = 2/169 (1%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ TV V +K+ + + Q + + A+ + K+ +D+L+ A
Sbjct: 62 DDTKTVAVVNDEKITGKDYNSVLSTAQMQYQQTGQDPTSKDAAQ--QIKKQAIDSLIGQA 119
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ Q + G +A + ++ S + + F V + L + T+
Sbjct: 120 LITQEADKKGYKASEKEIEKQLDESKKQYKNEQDFEEAVKKAGLNMNTLKSDIADSIKTE 179
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
++ V + A + + + +
Sbjct: 180 KYIDKELPTDQVTDKEIKDYYDQFAAQQKDSGQKNTPAFDDVKQQIQDM 228
>gi|330817257|ref|YP_004360962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
gladioli BSR3]
gi|327369650|gb|AEA61006.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
gladioli BSR3]
Length = 259
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/204 (13%), Positives = 64/204 (31%), Gaps = 10/204 (4%)
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
+ + G+E+ Q + + K + I++ + EV
Sbjct: 57 RKMVGQELVNREILMQEALKEGLPNRADVKQQVAIAQQTVVLRALIEDFVKKNQPSDAEV 116
Query: 483 LTDVKKDWKTVKTAEE--------VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ K +E +A L+ + K G F D+ K +
Sbjct: 117 KAKYDELAKGATGSEYHLHHILVDNEQQAKDLIAKI-KAGAKFEDLAKQFSKDPGSAKNG 175
Query: 535 NRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
+D + K F + + + P++ + + +V + + ++ +
Sbjct: 176 GDLDWADPKSFVPEFANAATHLQKGQMTDEPVKTQFGWHIIRVDDVRPIAPPPFEQVKAQ 235
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVT 617
L Q M + L + L++Q +
Sbjct: 236 LAQQMVQQKLQAFEEKLRAQAKIQ 259
Score = 40.6 bits (92), Expect = 0.89, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 3/139 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
K + + ++ N+++A + +K G KF LA++ K G
Sbjct: 117 KAKYDELAKGATGSEYHLHHILVDNEQQAKDLIAKIKAGAKFEDLAKQFSKDPGSAKNGG 176
Query: 315 FSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
P A++ L K + FG+ I V +++P F++VK +
Sbjct: 177 DLDWADPKSFVPEFANAATHLQKGQMTDEPVKTQFGWHIIRVDDVRPIAPPPFEQVKAQL 236
Query: 372 ANQMRITKASEKVKEDYKR 390
A QM K ++ +
Sbjct: 237 AQQMVQQKLQAFEEKLRAQ 255
Score = 40.6 bits (92), Expect = 0.89, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 12/80 (15%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V V +P S Q + Q S L K + LV+ L
Sbjct: 23 QNVAVVNGTPIPKSRVDAMVAQLVQQGQQ-----------DSEQLRKMVGQELVNREILM 71
Query: 101 QFIEDIGLEADHGRVWGEIA 120
Q GL + V ++A
Sbjct: 72 QEALKEGL-PNRADVKQQVA 90
>gi|325268744|ref|ZP_08135372.1| hypothetical protein HMPREF9141_0581 [Prevotella multiformis DSM
16608]
gi|324988912|gb|EGC20867.1| hypothetical protein HMPREF9141_0581 [Prevotella multiformis DSM
16608]
Length = 474
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 55/423 (13%), Positives = 116/423 (27%), Gaps = 43/423 (10%)
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK--EKYFSPE 268
L+ + +++ E K + +++A
Sbjct: 79 DTLSSFKKEFLGYRDQQIRPAFIRDADVEAEARKIYRDTRRQIEANGGLWHCAHILVGMR 138
Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
R ++ ++ AD + +L+KG F +LA++ + L K +
Sbjct: 139 QRASKEEENAARQLADSLYTALQKGADFTELAKKYSTDTRSAKNGGDLPGLQKGQTV--A 196
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ K G+ + + FGY I + + ++ DI + + +++
Sbjct: 197 EFEKAMLALKPGETSRPVLSPFGYHIIKMIGH--EELPPYDSLRADIMQYIEMRGLRDQI 254
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
E K+ ++ D + Y + LL
Sbjct: 255 ISQRLDSLAQAGGKEVTQEQILDRKLAELEEKDADL--------KHLVREYHDGLLMVEM 306
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
K +Y K+ A R A V +A+
Sbjct: 307 SNRTVWDKAAKDETALEAYYRKHRKQYKWAEPRFKG--------------IAYHVKKQAD 352
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF----GYDGISQVFSGPVEMV 560
++ +G F + L + I R+ E F ++F
Sbjct: 353 VDAVKACVKGLPFSKWAERLRDTFNKDGNI-RIRVEKGIFRKGDNALIDREIFGQETAAT 411
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
Y + V K+ + D + +L +A L+ +Y V V
Sbjct: 412 PV------EGYPIDAVFGKKIKAPEGLDDVRDLVISDYQGELEKEWVASLRRKYKVVVDK 465
Query: 621 NLI 623
++
Sbjct: 466 AVL 468
>gi|294139570|ref|YP_003555548.1| survival protein surA [Shewanella violacea DSS12]
gi|293326039|dbj|BAJ00770.1| survival protein surA [Shewanella violacea DSS12]
Length = 434
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 11/192 (5%)
Query: 21 LFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
L + FL S + + + V V V S N S G + S+
Sbjct: 7 LIIAFLTLASSHMVQAENTPLDRVSVQVNEGIVLESEITNMVTTVKTNASA-AGQSLPSD 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
+A L ++++ L+ Q + IGL ++ I KD K + D
Sbjct: 66 QA----LRTQVIERLIVTRLQMQMADRIGLHIGDLQLDQTIGNI----AKDQKLTVDQMK 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
++ EG++ Y + + ++ ++ + V + E + +
Sbjct: 118 HKIGGEGMSWSHYREQLREEMTLGEIQRIQVQRRIQVSPQEINNLVNMIEEQGLKQTEFQ 177
Query: 199 NRHVPAIADPSN 210
H+
Sbjct: 178 IGHILIEIPNDP 189
>gi|226952980|ref|ZP_03823444.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ATCC 27244]
gi|226836301|gb|EEH68684.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter sp. ATCC 27244]
Length = 437
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 36/405 (8%), Positives = 92/405 (22%), Gaps = 56/405 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + L L S F+ V V + S + +
Sbjct: 4 KHFQHIFRATVLAALISS------SMHSFAQPADEVVAIVDSSVILKSDLVQGIAEAEHQ 57
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI------- 119
+ + V + + ++LD L+ + ++ G++ D + +
Sbjct: 58 LKAQNQTVPPKQYLQM-----QVLDQLIIRQAQLEQVKRYGIKPDENSLNAAVLRVANQS 112
Query: 120 --ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
F K + + + + R + +++SR + V S
Sbjct: 113 GSNSLSAFQQKLDAIAPGTYENLRNRIAEDLAIGRLRQQQVMSRIKISDHDVENFLKSPE 172
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADP----------------------------- 208
NN +
Sbjct: 173 GQAALGTQVHVLHMRISGTDNNEVQKVAEEVRRSLATSNDPKAISSKLSTGTVTVDGADM 232
Query: 209 -----SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
S V + ++ + L +Y+
Sbjct: 233 GFRALSEIPTELAARVTPLQVGQTTGLVNVRDGTHVLKLLERKQNDQRALVPQYKTRHIL 292
Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
+ E+ + ++ + + + G + +LG + +
Sbjct: 293 IQTSEVVSSDRAKQMIDSLYNRIKAGEDFATLAATFSNDPGSARDGGNLGWVNAGVMVPE 352
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
+ + G + FG+ I V++ + + +
Sbjct: 353 --FEKVMKEIPVGQLSEPFQSQFGWHILEVTDTRQQDMTKEAQER 395
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 21/207 (10%), Positives = 59/207 (28%), Gaps = 3/207 (1%)
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D A+ L V + DG+++ ++ +
Sbjct: 221 STGTVTVDGADMGFRALSEIPTELAARVTPLQVGQTTGLVNVRDGTHVLKLLERKQNDQR 280
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ + T + + + + + + K G++F + +
Sbjct: 281 ALVPQYKTRHILIQTSEVVSSDRAKQMIDSLYNRIKAGEDFATLAATFSNDPGSARDGGN 340
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISY 593
+ N +V P ++ + + +VT+++ ++
Sbjct: 341 LGWVNAGVMVPEFEKVMKEIPVGQLSEPFQSQFGWHILEVTDTRQQDMTKEAQERMTRQI 400
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHD 620
L + + +DS L++ V + D
Sbjct: 401 LGERQFETEVDSWTRELRANAYVEIKD 427
>gi|206560348|ref|YP_002231112.1| putative exported isomerase [Burkholderia cenocepacia J2315]
gi|198036389|emb|CAR52285.1| putative exported isomerase [Burkholderia cenocepacia J2315]
Length = 260
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + D+ + + Q + + L + L+ Q +
Sbjct: 202 QMTDTPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260
Score = 44.8 bits (103), Expect = 0.049, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + ++ E++A Y++ + + ++ N+++A + +K G KF
Sbjct: 101 MIEGFLKKNQPTDAEVKARYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I V
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRVD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+I+ F +VK IA Q+ K + ++
Sbjct: 221 DIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQ 256
>gi|50122778|ref|YP_051945.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium
atrosepticum SCRI1043]
gi|81693097|sp|Q6D0E2|SURA_ERWCT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|49613304|emb|CAG76755.1| survival protein [Pectobacterium atrosepticum SCRI1043]
Length = 431
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 62/170 (36%), Gaps = 11/170 (6%)
Query: 48 RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
V S + + +Q+ G + + L +I D L+ + Q + +G
Sbjct: 34 NSVVLESDVNSLLQSVKLN-AQQAGQQLPDD----ATLRHQITDRLIMDNIILQMAQKMG 88
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
++ ++ I N+ S D S+LA EG+N Y K + ++V
Sbjct: 89 IQVTDEQLDQAITNIAA----QNRMSIDQLKSQLANEGLNYNTYRSQIRKEMLISEVRNN 144
Query: 168 FVGGMRP--SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
V + AK+ + D + L++ +P +P+ + +
Sbjct: 145 EVRRRVTVLPQEVDTLAKQIANQTGENDELNLSHILLPLPENPTQQQVDE 194
Score = 41.0 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 20/245 (8%), Positives = 62/245 (25%), Gaps = 7/245 (2%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ E + + +IS + + + G+ + LF
Sbjct: 188 TQQQVDEAENLATSLVKQISEGADFGKLAITYSSDSQALKGGQMGWGKLQEIPTLFAERL 247
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
+ + +++ + E + V T + +K
Sbjct: 248 TQVQKGQVVGPIRSGVGFHILKVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQAKL 307
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKC 562
+ + +F K L + NQ + + + +
Sbjct: 308 ADVAQQIKNGSTDFAAQAKLLSQDPGSANQGGDLGWASPDMYDPAFRDALLKLKKGEISQ 367
Query: 563 FPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
PI + + + ++ + +K++ + + + + ++ V V
Sbjct: 368 -PIHSSFGWHLIQLLDTRQVDKTDAAQKEQAYRMIFNRKFAEEAQTWMQEQRAAAYVKVI 426
Query: 620 DNLIQ 624
+
Sbjct: 427 NGATN 431
>gi|149916817|ref|ZP_01905319.1| hypothetical protein PPSIR1_05633 [Plesiocystis pacifica SIR-1]
gi|149822534|gb|EDM81923.1| hypothetical protein PPSIR1_05633 [Plesiocystis pacifica SIR-1]
Length = 323
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 11/131 (8%)
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ + K + V+ G++F + LG + + + R +
Sbjct: 198 EDSSERDAVFKRAKTVVRRLSGGEDFEAVAAELGQAAESEE-VTR-----SGVSRPIGER 251
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVI 607
+F V P+ +G YVVF V + KD+ L + + L +
Sbjct: 252 LFKAKAGDV-VGPLSSGQGYVVFLVEEVIASDLLGFEEAKDRLRRLLEEEARQKALKELY 310
Query: 608 AYLKSQYSVTV 618
L+++ V +
Sbjct: 311 EQLRARAHVDI 321
Score = 46.0 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 40 SSTVVSVGRQKVPFSSFIN--SWKQELGMISQKIGFVVNSERARSV-GLDKKILDNLVSG 96
V V + + S + +E+ QK+ + R + L+ LDNL+
Sbjct: 32 DRIVAVVDDEIILESDLARWLMFDEEIAFELQKLQNPTEDQLMRRLAELEPLALDNLIGR 91
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSP 123
+ + + A V + +
Sbjct: 92 KLMLSQAQTFQVGATEQEVEVYLQQLA 118
>gi|187251884|ref|YP_001876366.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Elusimicrobium
minutum Pei191]
gi|186972044|gb|ACC99029.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Elusimicrobium
minutum Pei191]
Length = 390
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/376 (11%), Positives = 102/376 (27%), Gaps = 31/376 (8%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+ + S F + + + + L+K++LD +++ L Q E
Sbjct: 33 NGKPILQSDFDKVAGAFEAQYTAAA-PKLMEQPGVKLKLEKEVLDQMINDELLFQAAEKE 91
Query: 107 GLEADHGRVWGEIAR-----SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
G++A + + + P K S + E + L +
Sbjct: 92 GVKAREDEIDEAVKQAKDALIPAADEKGKPISEKERTKQFDAALKKEGISQKQFRDKLKK 151
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ +V + + + V ++ + A+ P +
Sbjct: 152 QIMSRKYVETAIVTKVKPVEEADAKALYDQVKAVMKKDSKKTALIKPEEHKKEVEAIAMR 211
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ RI +I + + +I E A+ K K V Q
Sbjct: 212 LEQLSAPKVRIGHIFLEAPKAAGADKIKEKEALAKEIKKKIDGGMDFSTAVRQFS----- 266
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ S S K D+ G +
Sbjct: 267 --------------------DDKNSQSTGGDMILIKGAPNTPKEIDTKAFSLDVGKVSDP 306
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
I FG+ I + + +++++V ++ + + + E K L + +
Sbjct: 307 IKTDFGFHIIKIKEKSAAEEITYEKVAREFGQYIAAQRIQVAINEHIKDLNSKAEIKINK 366
Query: 402 DEISRREKIVSIDLPL 417
D + + ++
Sbjct: 367 DFSALEKPAANVKEEP 382
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 14/169 (8%)
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
KE R + V+ ++ + + + +KE K D G +
Sbjct: 201 HKKEVEAIAMRLEQLSAPKVRIGHIFLEAPKAAGADKIKEKEALAKEIKKKIDGGMDFST 260
Query: 527 SLLTTNQINRMDNENKFF---------GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
++ + + + ++ FS V V PI+ + + K+
Sbjct: 261 AVRQFSDDKNSQSTGGDMILIKGAPNTPKEIDTKAFSLDVGKV-SDPIKTDFGFHIIKIK 319
Query: 578 NSKVGPVQEKD----KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+ +F Y+ + ++ I L S+ + ++ +
Sbjct: 320 EKSAAEEITYEKVAREFGQYIAAQRIQVAINEHIKDLNSKAEIKINKDF 368
>gi|153864542|ref|ZP_01997413.1| secreted protein [Beggiatoa sp. SS]
gi|152145964|gb|EDN72588.1| secreted protein [Beggiatoa sp. SS]
Length = 110
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
I +L + F + A + V V + ++ ++E ++Q+
Sbjct: 9 ILYCLLIISFDV----CAAQRETLDYIVAIVNDDVIVNTALQQQLRREHEKLAQQ----- 59
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
N E +V L+K++LD+++ A Q E G++ + +
Sbjct: 60 NIELPPNVNLEKRVLDSMIMIALQLQLAEKTGIKVEDSHLKR 101
>gi|253996058|ref|YP_003048122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
mobilis JLW8]
gi|253982737|gb|ACT47595.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera
mobilis JLW8]
Length = 262
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 48/132 (36%), Gaps = 2/132 (1%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGY 546
K++ + ++A ++ + K G +F I K + + +
Sbjct: 130 KEYSARHILVKTEAEAKDIIAQLGKGG-DFAKIAKEKSLDPGSKEKGGDLGWFSPATMVK 188
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
V + P++ + V K+ +++ +K + + + + L+ +
Sbjct: 189 PFSDVVANLQKGATSASPVQTQFGWHVIKLVDTRPAQPLPYEKLKDGIQKNLQQHNLEKL 248
Query: 607 IAYLKSQYSVTV 618
++ L+++ + +
Sbjct: 249 MSDLRAKAKIDI 260
Score = 39.1 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 11/98 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + + S + + +V + V S + K G +++
Sbjct: 3 LIQTLIAVAVLSMTPSAFAADALATVNGKPVKQSLYDVIVKDVTAN-----GQKIDANT- 56
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
I+D LVS + Q + +GL+ V E
Sbjct: 57 -----KAAIIDELVSSELVYQEAQRLGLDKQADYVARE 89
>gi|152999582|ref|YP_001365263.1| SurA domain-containing protein [Shewanella baltica OS185]
gi|160874201|ref|YP_001553517.1| SurA domain-containing protein [Shewanella baltica OS195]
gi|217974467|ref|YP_002359218.1| SurA domain-containing protein [Shewanella baltica OS223]
gi|151364200|gb|ABS07200.1| SurA domain protein [Shewanella baltica OS185]
gi|160859723|gb|ABX48257.1| SurA domain [Shewanella baltica OS195]
gi|217499602|gb|ACK47795.1| SurA domain protein [Shewanella baltica OS223]
gi|315266433|gb|ADT93286.1| SurA domain [Shewanella baltica OS678]
Length = 434
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 10/152 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
++F F + L + V + V S N ++ + S+
Sbjct: 7 LIFALFALAISQPTLAAPQPLDRVAVQINDGIVLESEITNMIDTVKAN-AKTANQSLPSD 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
A L ++++ L+ Q + IGL ++ I K S
Sbjct: 66 SA----LRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KMSVAQMQ 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ EG++ +Y + + ++ ++ + V
Sbjct: 118 QKIESEGLSFSQYREQLREEITLGEIQRIQVQ 149
Score = 38.3 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 15/203 (7%), Positives = 57/203 (28%), Gaps = 4/203 (1%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD- 485
G + LF + ++I ++ + +++EEV
Sbjct: 231 GIWDYMNINEMPTLFAEVINGAKTGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARH 290
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
+ + + + + Q + + F D+ + + + +
Sbjct: 291 ILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIY 350
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDL 602
+Q + P + + ++ + ++ ++ + + +
Sbjct: 351 VPEFAQTLNSLKTDQISEPFRTTHGWHITQLEERRKTDATDQFNSNRAHQLIFRRKFNEE 410
Query: 603 LDSVIAYLKSQYSVTVHDNLIQR 625
L + + ++S + + R
Sbjct: 411 LQNWLDEMRSDAYIEIFQPETNR 433
>gi|308445916|ref|XP_003087049.1| hypothetical protein CRE_13891 [Caenorhabditis remanei]
gi|308264485|gb|EFP08438.1| hypothetical protein CRE_13891 [Caenorhabditis remanei]
Length = 438
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/381 (8%), Positives = 94/381 (24%), Gaps = 53/381 (13%)
Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
++++ + VG + S + + + + L +++L
Sbjct: 24 SVYAAPQDQIIAIVGSTAILKSDLDQGVAEATHRLQAQKKEIPP-----QNILQQQVLSQ 78
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEI---------ARSPLFHGKDNKFSHDVFVSRLAR 143
L++ + ++ GL+AD + + F K + + + L
Sbjct: 79 LITHDAQLEQVKKYGLKADEKSLNEAVLKVAQQSGENSLEAFQKKLDAVAPGTYE-LLRN 137
Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
+ + + + + A +
Sbjct: 138 RVAEDLLIQRLSQQQVMSRIKITDLDVENFLKSPEGQAAVGSQVHVLHMRISGEAPASEL 197
Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
+ + K + ++ D+ + ++ + + +
Sbjct: 198 ESIAKAVRTDLKDSNDVKSIEKKFSTAQVKVDGADMGFRPLSDIPTDLAARVTTLEPGQT 257
Query: 264 YFSPEIRTVEQLVFPNQKEADEA--------------------------------FQSLK 291
+ ++ +K+++E + LK
Sbjct: 258 TDLIPAKDGVHVLKLLEKKSNEQKALVPQFNTRHILIKTSEVVSPENAKQTIDSIYNRLK 317
Query: 292 KGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G F LA SLG S + D + + + + FG
Sbjct: 318 AGDDFATLASTYSNDPGSARDGGSLGWVSPGMMVPE--FDKLMQSSPVNEISKPFQTQFG 375
Query: 348 YVIAHVSNIKPSFTVSFQEVK 368
+ I V+ + S + +
Sbjct: 376 WHILQVTGTRQQDMTSEYQKR 396
Score = 42.2 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 16/217 (7%), Positives = 56/217 (25%), Gaps = 3/217 (1%)
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
D + L +P + DG ++ +++
Sbjct: 216 SIEKKFSTAQVKVDGADMGFRPLSDIPTDLAARVTTLEPGQTTDLIPAKDGVHVLKLLEK 275
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
+ + + T + + E + + + K G +F + +
Sbjct: 276 KSNEQKALVPQFNTRHILIKTSEVVSPENAKQTIDSIYNRLKAGDDFATLASTYSNDPGS 335
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKD 588
+ + ++ P + + + +VT ++ + +
Sbjct: 336 ARDGGSLGWVSPGMMVPEFDKLMQSSPVNEISKPFQTQFGWHILQVTGTRQQDMTSEYQK 395
Query: 589 KFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + + D + L++ + + D +
Sbjct: 396 RMARQILGERQFESEYDGWLRELRANTYIEIKDPSLD 432
>gi|37678664|ref|NP_933273.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
gi|37197404|dbj|BAC93244.1| parvulin-like peptidyl-prolyl isomerase [Vibrio vulnificus YJ016]
Length = 443
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 50/139 (35%), Gaps = 10/139 (7%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + L+ G S V V V + S + K + G +
Sbjct: 22 LLLGMLVTG-SAVSAPVELDKVAVIVNDGVILQSDIDTATKTLRANAKK-SGQALPDADV 79
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L+++I+D L+ Q + IG+ D R+ I + + D +
Sbjct: 80 ----LNEQIVDKLIIDTLQTQEADRIGVRIDDTRLNQAIEEIARNNNQTI----DELSAA 131
Query: 141 LAREGINEKEYIDHYTKML 159
+A EG++ +E+ + K +
Sbjct: 132 IASEGVSYEEFREQIRKEM 150
>gi|320157503|ref|YP_004189882.1| survival protein SurA (Peptidyl-prolyl cis-trans isomerase SurA)
[Vibrio vulnificus MO6-24/O]
gi|319932815|gb|ADV87679.1| survival protein SurA precursor (peptidyl-prolyl cis-trans
isomerase SurA) [Vibrio vulnificus MO6-24/O]
Length = 432
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 10/139 (7%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + L+ G S V V V + S + K + G +
Sbjct: 11 LLLGMLVTG-SAVSAPVELDKVAVIVNDGVILQSDIDTATKTLRANAKK-SGQALPDADV 68
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L+++I+D L+ Q + IG+ D R+ I + + D +
Sbjct: 69 ----LNEQIVDKLIIDTLQTQEADRIGVRIDDTRLNQAIEEIARNNNQTI----DELSAA 120
Query: 141 LAREGINEKEYIDHYTKML 159
+A EG++ E+ + K +
Sbjct: 121 IASEGVSYAEFREQIRKEM 139
>gi|86160750|ref|YP_467535.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85777261|gb|ABC84098.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 338
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 45/150 (30%), Gaps = 5/150 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + +RAR+ L + D +VS
Sbjct: 37 DRVAAIVNGDVVTLQELEQRAAALGLAAADALPAGPERDRARAEALRRA-FDQVVSDKLF 95
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ +++ +E +V I K N F+ S LA EG + +Y + L
Sbjct: 96 AEKAKELEIEVTEKQVDDAIEGVK----KQNGFTDAQLESALASEGYSMADYRTRIRREL 151
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
++ V G ++ +
Sbjct: 152 QNFSLLQYKVAGKIKTSEEDLRNYYQSHPQ 181
Score = 45.6 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 495 TAEEVSSKAN-QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ ++A Q VL+ K G++F + K + + F
Sbjct: 204 KQAQAQARAEGQRVLQRLKTGEDFGAVAKAVSRGPSAEEGGELGWLKRGTIHRTLEDAAF 263
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAY 609
+ + +E G + KV + G + ++ + Q + ++ +A
Sbjct: 264 ALKTGEISGL-VEAGPGVHILKVEERRRGGGKSFEQAREEIRQRLGEEQAENYRQQYVAE 322
Query: 610 LKSQYSVTV 618
L+ + V
Sbjct: 323 LRRDALIDV 331
>gi|107028909|ref|YP_626004.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia AU 1054]
gi|116689933|ref|YP_835556.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia HI2424]
gi|170733271|ref|YP_001765218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia MC0-3]
gi|105898073|gb|ABF81031.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia AU 1054]
gi|116648022|gb|ABK08663.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia HI2424]
gi|169816513|gb|ACA91096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia MC0-3]
Length = 260
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + D+ + + Q + + L + L+ Q +
Sbjct: 202 QMTDAPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260
Score = 44.1 bits (101), Expect = 0.069, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + ++ E++A Y++ + + ++ N+++A + +K G KF
Sbjct: 101 MIESFLKKNQPTDAEVKARYDELVKGVGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I V
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDAPVKTQFGWHIIRVD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+I+ F +VK IA Q+ K + ++
Sbjct: 221 DIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQ 256
>gi|109899724|ref|YP_662979.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
atlantica T6c]
gi|122070658|sp|Q15QB3|SURA_PSEA6 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|109702005|gb|ABG41925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
atlantica T6c]
Length = 431
Score = 56.8 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/204 (13%), Positives = 63/204 (30%), Gaps = 12/204 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K+ +V + + V + V V + V S
Sbjct: 1 MKLTVVTFAL-LAFISFNTFAKQVRLDNVAVIVDQGVVLESQIEELVNTVKRNALTN-NQ 58
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ S+R L + ++ L+ + +Q E +G++ ++ I G
Sbjct: 59 TLPSDRV----LRTQAIERLIVDSLQNQMAERMGIQISDPQLDQTIDNIAREDGTTV--- 111
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPSNLLLDQAKRFYFENRS 191
+ LA EG++ + Y + K L +V V + + +
Sbjct: 112 -EDLRKNLASEGVSFEVYREQVRKELVTGEVRRANVRRRIYITPQEISNLVTLIDEQGGQ 170
Query: 192 VDYIVLNNRHVPAIADPSNAVLTQ 215
L + + +P++ +++
Sbjct: 171 QAEYHLGHILIGFPPEPTDEDVSK 194
Score = 38.3 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 25/217 (11%), Positives = 61/217 (28%), Gaps = 13/217 (5%)
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ I L + G +
Sbjct: 213 AKIATASSSGSKALEGGDLGWMNINSMPTLFAEAVQGTSKDDLIGPIRSGAG----FHVL 268
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK----EGKNFRDIGKNLG 525
+ I R + EV + + KA +++ E+ K +F ++ K
Sbjct: 269 KIIDFRGIEKVEVAELKSRHILIKPSVILSDEKAEKMLTEFRKELLAGEADFAELAKEHS 328
Query: 526 ASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
A + + + + + + S V + P+ + + + ++ + +V
Sbjct: 329 ADPGSALRGGDLGWADPNVYVPAFRDTLQSLEVGEISQ-PVRSTHGWHLMQLMDKRVQDA 387
Query: 585 QEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
EK DK L Q + ++ + ++ V +
Sbjct: 388 TEKRKEDKAYQLLFQRKFAEETEAWLKEMRDSAYVEL 424
>gi|316931933|ref|YP_004106915.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris DX-1]
gi|315599647|gb|ADU42182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris DX-1]
Length = 305
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 48/135 (35%), Gaps = 6/135 (4%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+V V+T +E + A +L K+G +F ++ K ++ +
Sbjct: 149 EQEVHARHILVETEDEAKAVAEEL-----KKGADFAELAKKKSKDPGASDGGDLGFFTKD 203
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
+ + F+ + P+++ + + KV + D+ + + Q + +
Sbjct: 204 QMVPEFSAVAFALEPGKI-SDPVKSQFGWHIIKVEEKRNRKPPSFDQVKAQIEQYVARKA 262
Query: 603 LDSVIAYLKSQYSVT 617
++ L+ V
Sbjct: 263 QSDYVSKLRQAAKVE 277
>gi|117921645|ref|YP_870837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
ANA-3]
gi|117613977|gb|ABK49431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
ANA-3]
Length = 434
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 10/152 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
++F F + + + V + V S N + S+
Sbjct: 7 LIFALFALAISQPTMAAPQPIDRVAVQINDGIVLESEITNMIDTVKANARA-ANQSLPSD 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
A L ++++ L+ Q + IGL ++ I K +
Sbjct: 66 SA----LRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KMTVAQMQ 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ EG++ +Y + + ++ ++ + V
Sbjct: 118 QKIESEGLSFSQYREQLREEITLGEIQRIQVQ 149
Score = 38.3 bits (86), Expect = 4.1, Method: Composition-based stats.
Identities = 19/287 (6%), Positives = 77/287 (26%), Gaps = 10/287 (3%)
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ + P ++ ++ + + + + +S + E
Sbjct: 147 QVQRRIQVSPQEITGLVKLIQEQGMKDVEYQIGHILIDVPNNPSSEQLEASSKRANAVLE 206
Query: 409 KIVSID------LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
++ S + + G + LF
Sbjct: 207 RLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEMPTLFAEVINGAKKGDIIGPIKSGAG 266
Query: 463 YMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ ++I ++ + +++EEV + + + + + Q + + F D+
Sbjct: 267 FHIIKIMDARGLQTKEIEEVRARHILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLA 326
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ + + + +Q + P + + ++ +
Sbjct: 327 RQYSEDPGSATKGGELGWAEPSIYVPEFAQTLNSLSPDQISEPFRTTHGWHITQLEERRK 386
Query: 582 GPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
++ ++ + + + L + + +++ + V R
Sbjct: 387 TDATDQFNTNRAHQLIFRRKFNEELQNWLDEMRADAYIEVFQPESNR 433
>gi|149191632|ref|ZP_01869876.1| parvulin-like peptidyl-prolyl isomerase [Vibrio shilonii AK1]
gi|148834532|gb|EDL51525.1| parvulin-like peptidyl-prolyl isomerase [Vibrio shilonii AK1]
Length = 419
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 9/127 (7%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V V + S ++ K + + E + + ++ILD L+ Q
Sbjct: 17 VIVNDGVILQSDIDSATKTLTANARKN-----DQELPSADIIQEQILDKLILEKLQLQEA 71
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ IG+ D R+ + K+N + + + EG+ + + + ++ ++
Sbjct: 72 DRIGVRIDDNRLESTLNDI----AKNNNQTIEQLRQTVREEGLTWEAFREQIRDEIAASE 127
Query: 164 VVGMFVG 170
V
Sbjct: 128 ARNAMVR 134
>gi|253701712|ref|YP_003022901.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
gi|251776562|gb|ACT19143.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
Length = 323
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 49/173 (28%), Gaps = 9/173 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V + + K L ++ + E + + LD L+S
Sbjct: 30 SQDVPALVNGAPITRGEVDRAVKALLSQ--NRMAQPIAPEVMKKAT--EAALDQLISAEV 85
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
L Q ++G+ +V +A+S + D + L ++EKE K
Sbjct: 86 LYQAASEMGVADLDRQVRDRVAQSRSRYRTG-----DEYEKALDSVEMSEKEVELAVRKD 140
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ +++ + + +S + P A
Sbjct: 141 IVINNLIRTQFLPKATVSEAEIEEFYRENREKSFRLGERVRVSQILVPVPEQA 193
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 6/127 (4%)
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
++ KA L+ K G++F + A N + F
Sbjct: 197 ARKQAREKALALLQRVRK-GEDFAAVASLESAPPTNKNGGDMGGLNRGEAVPSFEKAAFG 255
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAYL 610
V V +E + + + K++ D+ + + + + + A L
Sbjct: 256 LKVGEV-SEVVETPVGFHIVKLSQKLPPATATLDEARGQIVRYLQQSKVRKSVAEYAAQL 314
Query: 611 KSQYSVT 617
++ +
Sbjct: 315 RASGHIE 321
>gi|57339632|gb|AAW49803.1| hypothetical protein FTT0468 [synthetic construct]
Length = 508
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 46/169 (27%), Gaps = 12/169 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + L + F + L ++ L +L+S + L
Sbjct: 84 NKTVAIVNSRPITSFELDQELAK-LEAMQPNSAFNTDP-------LKRQALQDLISQSVL 135
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 136 LQLAERNNIMISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIRDQL 191
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 192 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 240
>gi|86148121|ref|ZP_01066421.1| parvulin-like peptidyl-prolyl isomerase [Vibrio sp. MED222]
gi|218708410|ref|YP_002416031.1| putative parvulin-like peptidyl-prolyl isomerase [Vibrio splendidus
LGP32]
gi|85834108|gb|EAQ52266.1| parvulin-like peptidyl-prolyl isomerase [Vibrio sp. MED222]
gi|218321429|emb|CAV17381.1| putative Parvulin-like peptidyl-prolyl isomerase [Vibrio splendidus
LGP32]
Length = 431
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 9/140 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ + + V S V V + S S K + G + S+
Sbjct: 8 LIAIAAACTLSTSYAAPVELDSVKVIVNEGVILQSDIDTSMKTLRANAKK-SGQTLPSQD 66
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L++++L+ L+ Q E IG+ D R+ I + + + +
Sbjct: 67 V----LNEQVLEKLIIDTIQTQEAERIGVRIDDARLDQAIEGIAKDNNQTVQ----QLTA 118
Query: 140 RLAREGINEKEYIDHYTKML 159
+A EG++ + + K +
Sbjct: 119 SVAEEGLSYNAFREQVRKEI 138
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 24/275 (8%), Positives = 76/275 (27%), Gaps = 9/275 (3%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
NI P+ + ++ N K + + D +
Sbjct: 150 RRINILPAEVDNLADILAQETNATVQYKIGHIQLRFNDDQTKEELEAQATDLVEELNNGK 209
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
++ + +++ + +F + ++ P S + I +
Sbjct: 210 DFSTMAYTYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKI 269
Query: 472 IPARDRKLEEVLT----DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + V + + + + + ++ + +F D+ +
Sbjct: 270 EDVKGLETVAVTEVNARHILIKPTVILSDDGAKEQLEEITRRVNAGEASFGDLAQQYSQD 329
Query: 528 LLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGP 583
+ Q + + + QV + P + P + + + +V +
Sbjct: 330 PGSAVQDGELGYQTPDLYVPEFKHQVETLPEGKI-SAPFKTVHGWHIVEVLDRREVDRTD 388
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K+K L + + + + +++ V V
Sbjct: 389 SALKNKAYQILFNRKFNEEVGAWLQEVRASAFVEV 423
>gi|227327727|ref|ZP_03831751.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 431
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/396 (10%), Positives = 107/396 (27%), Gaps = 55/396 (13%)
Query: 48 RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
V S + + +Q+ G + + L +I D L+ + Q + +G
Sbjct: 34 NSVVLESDVNSLLQSVKLN-AQQAGQQLPDD----ATLRHQITDRLIMDNIILQMAQKMG 88
Query: 108 LEADHGRVWGEIARSPLFHGK-----DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
++ ++ I + ++ +++ R I ++ I R
Sbjct: 89 IQVTDEQLDQAITNIAAQNRMSLDQLKSQLAYEGLNYSTYRNQIRKEMLISEVRNNEVRR 148
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
+ + + + Q N S I L D + + T ++ +
Sbjct: 149 RITVLPQEVDTLAKQIATQTGENDELNLSHILIPLPENPTQQQVDEAENLATSLVKQINE 208
Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-------------- 268
+ + + E+ + + + +
Sbjct: 209 GADFGKLAITYSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHIL 268
Query: 269 ---------------IRTVEQLVFPNQKEADEAFQSLKKGKKFIQ--------------L 299
++ ++ K + Q L
Sbjct: 269 KVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQAKLAEVAQQIKNGSTDFASQAKLL 328
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+++ G + LG S + D + D++ KKG+ + +H SFG+ + + + +
Sbjct: 329 SQDPGSANQGGDLGWASP-DMYDPAFRDALL-KLKKGEISQPVHSSFGWHLIQLLDTRQV 386
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
+ ++ A E ++
Sbjct: 387 DKTDAAQKEQAYRMIFNRKFAEEAQTWMQEQRAAAY 422
Score = 40.6 bits (92), Expect = 0.92, Method: Composition-based stats.
Identities = 16/198 (8%), Positives = 52/198 (26%), Gaps = 7/198 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G+ + LF + + +++ + E
Sbjct: 229 GQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIRGGNKSVSVTETHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V T + +K ++ + +F K L + NQ +
Sbjct: 289 HILIKPSVVMTDSQAQAKLAEVAQQIKNGSTDFASQAKLLSQDPGSANQGGDLGWASPDM 348
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + + P+ + + + ++ + +K++ +
Sbjct: 349 YDPAFRDALLKLKKGEISQ-PVHSSFGWHLIQLLDTRQVDKTDAAQKEQAYRMIFNRKFA 407
Query: 601 DLLDSVIAYLKSQYSVTV 618
+ + + ++ V V
Sbjct: 408 EEAQTWMQEQRAAAYVKV 425
>gi|255320532|ref|ZP_05361713.1| chaperone SurA [Acinetobacter radioresistens SK82]
gi|255302504|gb|EET81740.1| chaperone SurA [Acinetobacter radioresistens SK82]
Length = 436
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 48/404 (11%), Positives = 97/404 (24%), Gaps = 53/404 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+T K F + +I S F+ V V + S I + +
Sbjct: 2 KTKYFKQFFKATALALVISS-SMQSFAQPVDEVVAIVDNGVILKSDLIQGVAELKHQLET 60
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI---------A 120
+ V L+K+ LD L+ + + ++ D + +
Sbjct: 61 QKREVPP-----QAFLEKQALDQLILRQAQLEQVRRYNVKPDEKSLNEAVMKVASQSGTK 115
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--------- 171
F K + + + S R + +++SR + V
Sbjct: 116 TLEAFQQKLDAMAPGTYESLRNRIAEDLAINRLRQQQVMSRIKISDQDVENFLKSPQGQA 175
Query: 172 ------MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
+ + K+ + I S + +
Sbjct: 176 ALGSQVHVIHARITPKDKQTANVESVAQQVKNALNTSNDIQAISKQYSDTKVQVEGVDMG 235
Query: 226 APEYKRISYILFDVHEKEKKIEISN--------DELQAEYEKNKEKYFSPEIRTVEQLVF 277
I L + + L+ K E+ ++
Sbjct: 236 FRSLADIPAELAARVSALPVGQTTELIPARDGVHVLKVLERKTSEQKALVPQYQTRHILI 295
Query: 278 PN---------QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVS 324
+ D + LK G+ F LA SLG S +
Sbjct: 296 QPSEVVSPENAKHMIDNIYNRLKAGEDFTVLASTFSTDTGSARDGGSLGWVSPGVMVPE- 354
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
+ G + FG+ I V++ + + +
Sbjct: 355 -FEEKMKSTPVGQVSAPFQTQFGWHILQVTDTRQQDMTEEYQER 397
Score = 44.1 bits (101), Expect = 0.070, Method: Composition-based stats.
Identities = 28/258 (10%), Positives = 80/258 (31%), Gaps = 13/258 (5%)
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
A K + V+ ++++ L + IS++ + + VD
Sbjct: 185 HARITPKDKQTANVESVAQQVKNALNTSNDIQAISKQYSDTKVQVEGVDM--------GF 236
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
++ L + DG ++ ++ + + + T
Sbjct: 237 RSLADIPAELAARVSALPVGQTTELIPARDGVHVLKVLERKTSEQKALVPQYQTRHILIQ 296
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNENKFFGYDGI 549
+ + E + + K G++F + + + + +
Sbjct: 297 PSEVVSPENAKHMIDNIYNRLKAGEDFTVLASTFSTDTGSARDGGSLGWVSPGVMVPEFE 356
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYLTQMMN-KDLLDSV 606
++ S PV V P + + + +VT+++ + +++ + + LDS
Sbjct: 357 EKMKSTPVGQV-SAPFQTQFGWHILQVTDTRQQDMTEEYQERMARQILGERQFETELDSW 415
Query: 607 IAYLKSQYSVTVHDNLIQ 624
+ L++ V + +
Sbjct: 416 LRELRANAYVEIKQPNLD 433
>gi|296157842|ref|ZP_06840676.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
Ch1-1]
gi|295892088|gb|EFG71872.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
Ch1-1]
Length = 259
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 41/119 (34%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G +F D+ + + +D ++ K + +
Sbjct: 142 EQQAKDLIAKI-KAGASFEDLARQYSKDPGSGKNGGDLDWSDPKAYVPEFADAATHLQKG 200
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+ + + +V + + ++ + Q + ++ L + L+ +
Sbjct: 201 QMTDTPVHTQFGWHIIRVDDVRNITPPPLEQVRPQIVQQIQQEKLQAFEEGLRKNAKIQ 259
>gi|154252183|ref|YP_001413007.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
lavamentivorans DS-1]
gi|154156133|gb|ABS63350.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Parvibaculum
lavamentivorans DS-1]
Length = 287
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/160 (8%), Positives = 47/160 (29%), Gaps = 5/160 (3%)
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE----VSSKANQLVLEYSKEGKNFR 518
WVQ+ + + ++ + + + GK F
Sbjct: 109 VYWVQLMQDKVTDEAAKAYYEKNIAGAPAEQEAHARHILVQDKAKAAEIAAEIEGGKGFE 168
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+ K + + + + + VFS V P++ + + ++
Sbjct: 169 EAAKEYSQDPGSADGGDLGWFKRDEMVPEFGEAVFSMKPGEV-SAPVQTQFGWHLIQLVE 227
Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ P ++ + + + + ++ L++ + +
Sbjct: 228 LRDVPKPTYEEAHEEIIRQLARQEGQKLMEKLRTDAKIEI 267
Score = 41.8 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 23/277 (8%), Positives = 68/277 (24%), Gaps = 26/277 (9%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
L + F S + +V + +S + ++ +++
Sbjct: 10 ALILSFAAAPAFAQKDEPSADEPIATVNGTPISYSDVALADEEMGAALAR---------- 59
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS----HD 135
+ +L L+ + ++ + P + + F+ D
Sbjct: 60 LEPDVRFQYLLGMLIDRRVVALAAKE-----------KHVDDDPQVKRRQDYFNEKALRD 108
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
V+ +L ++ + ++ +Y K ++ A+ +
Sbjct: 109 VYWVQLMQDKVTDEAAKAYYEKNIAGAPAEQEAHARHILVQDKAKAAEIAAEIEGGKGFE 168
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+ L + + + + +L
Sbjct: 169 EAAKEYSQDPGSADGGDLGWFKRDEMVPEFGEAVFSMKPGEVSAPVQTQFGWH-LIQLVE 227
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
+ K Y + QL ++ E ++ K
Sbjct: 228 LRDVPKPTYEEAHEEIIRQLARQEGQKLMEKLRTDAK 264
>gi|171910549|ref|ZP_02926019.1| hypothetical protein VspiD_05235 [Verrucomicrobium spinosum DSM
4136]
Length = 297
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 48/141 (34%), Gaps = 7/141 (4%)
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ K E++ + A + + + D G +NQ + FG +
Sbjct: 148 FSREKRGEKLDANAKEALAALQDGNASDEDFGDAFLQPFEYSNQ--SEADIAGIFGREFA 205
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDS 605
+ + P P+ + + ++T S P E K + + + + +
Sbjct: 206 AALMKSPE-STWLGPVASTYGVHLVRITGSHASPPTELGKVREQVLRDLVDERRRTANEE 264
Query: 606 VIAYLKSQYSVTVHDNLIQRY 626
V+ +K Y + + D ++
Sbjct: 265 VLQQMKKNYEIVIDDAALRNA 285
>gi|114048604|ref|YP_739154.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
gi|121956474|sp|Q0HS08|SURA_SHESR RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|113890046|gb|ABI44097.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-7]
Length = 434
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 10/152 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
++F F + + + V + V S N + S+
Sbjct: 7 LIFALFALAISQPTMAAPQPIDRVAVQINDGIVLESEITNMIDTVKANARA-ANQSLPSD 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
A L ++++ L+ Q + IGL ++ I K +
Sbjct: 66 SA----LRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KMTVAQMQ 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ EG++ +Y + + ++ ++ + V
Sbjct: 118 QKIESEGLSFGQYREQLREEITLGEIQRIQVQ 149
Score = 38.3 bits (86), Expect = 4.3, Method: Composition-based stats.
Identities = 19/287 (6%), Positives = 77/287 (26%), Gaps = 10/287 (3%)
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ + P ++ ++ + + + + +S + E
Sbjct: 147 QVQRRIQVSPQEITGLVKLIQEQGMKDVEYQIGHILIDVPNNPNSEQLEASSKRANAVLE 206
Query: 409 KIVSID------LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
++ S + + G + LF
Sbjct: 207 RLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEMPTLFAEVINGAKKGDIIGPIKSGAG 266
Query: 463 YMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ ++I ++ + +++EEV + + + + + Q + + F D+
Sbjct: 267 FHIIKIMDARGLQTKEIEEVRARHILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLA 326
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ + + + +Q + P + + ++ +
Sbjct: 327 RQYSEDPGSATKGGELGWAEPSIYVPEFAQTLNSLSPDQISEPFRTTHGWHITQLEERRK 386
Query: 582 GPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
++ ++ + + + L + + +++ + V R
Sbjct: 387 TDATDQFNTNRAHQLIFRRKFNEELQNWLDEMRADAYIEVFQPESNR 433
>gi|320334162|ref|YP_004170873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
maricopensis DSM 21211]
gi|319755451|gb|ADV67208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
maricopensis DSM 21211]
Length = 331
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-GLDKKILDNLVSGAT 98
+ V +G Q + + F ++++Q + + G ++++ +IL+ +
Sbjct: 40 QTVVARIGTQTLTLADFESAYRQAVAQVVNAQGVPLSADVLPYFVQYRPEILEQVARQRA 99
Query: 99 LDQFIEDIGLEADHGRVWGEIARS 122
+ Q + GL+ D +V I
Sbjct: 100 VLQLAANSGLKVDTAKVDQSIEDL 123
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 24/208 (11%), Positives = 51/208 (24%), Gaps = 11/208 (5%)
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV----- 482
P + G ++ D + V
Sbjct: 122 DLRKEYPADADYTDALEGSGYVSEAALRQSIADAQLYRAYLDTIRGKFKFSDSVVNGYYL 181
Query: 483 --LTDVKKDWKTVKTAEEVSSKANQL-VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
D + + + A V +G++F + + + Q +
Sbjct: 182 SHKADFTRPAEACAKHILLKDDATARTVAARLSKGEDFAKVAAEVSEDPGSKGQGGDLGC 241
Query: 540 ENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
+ + VF GP+ V+ + G VV VT + + + +
Sbjct: 242 LAPGDTVPEFDAAVFKGPLNTVQTVKTQFGTHLVV--VTKRTDAGLAPLAEAADQIRDTL 299
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ I + V V +L+
Sbjct: 300 ANEAAQKYINAQLVKVKVEVFKDLVTEA 327
>gi|78061944|ref|YP_371852.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
383]
gi|77969829|gb|ABB11208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
383]
Length = 296
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 41/135 (30%), Gaps = 8/135 (5%)
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
++ +A L +F + K + + + Q
Sbjct: 162 DKARKQAADLASRARSG--DFAALAKANSQDKASAANGGDLGFVPDQLMVPAVRQAADAL 219
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
PI+ + V K+ + + K++ + L + + +A L +
Sbjct: 220 KPGQVSAPIQTPAGFHVVKLIDVRAAAPRPLADVKEQLRAMLRAQRTQQNAQAYLAKLAA 279
Query: 613 QYSVTVHDNLIQRYL 627
+ +++ +++ L
Sbjct: 280 NAPI--NEDALKKAL 292
>gi|222833212|gb|EEE71689.1| predicted protein [Populus trichocarpa]
Length = 386
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 9/113 (7%)
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ I+++ G + E L +++L+ L+ Q +D GL D V +
Sbjct: 1 MARVAQNIAEQ-GGQMPPEAL----LAREVLERLIVEKAQLQEAKDTGLRVDDYAVDQAL 55
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
+ N SRL EG+NEK++ + + ++ + V G
Sbjct: 56 TNV----ARQNGLDKAGLQSRLRAEGVNEKQFREELRRQITLQRLRERDVDGR 104
Score = 43.7 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 16/200 (8%), Positives = 56/200 (28%), Gaps = 5/200 (2%)
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
G+ + + +L + G+ G ++ +++S + +
Sbjct: 182 GQGGGAMGMRPLDRYPELFTKAVGQTAQGGIVGPFRSGAGFHVLKVLEKSQAGMPSVVTQ 241
Query: 482 VLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
+ T + + + +F + + N +
Sbjct: 242 NHARHILLRIGDQMTEADAAKRLADYKRRVDSGQASFESLAREFSQDGSARNGGDLGWAS 301
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDKFISYLTQM 597
F + QV + P+ + + ++ + P +++D + + +
Sbjct: 302 PGQFVPEF-EQVLNALQPGQVSDPLVSRFGVHLIQLIERRQAALTPREQRDMVRNVVRER 360
Query: 598 MNKDLLDSVIAYLKSQYSVT 617
+ + + L+ + V
Sbjct: 361 KLETDYQTWLQELRGRAYVE 380
>gi|70730194|ref|YP_259933.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Pseudomonas fluorescens Pf-5]
gi|68344493|gb|AAY92099.1| PPIC-type PPIASE domain protein [Pseudomonas fluorescens Pf-5]
Length = 318
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 51/149 (34%), Gaps = 6/149 (4%)
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ + AE+V +A +L + F + + + +
Sbjct: 168 QIFLGVAEPQAAEQVRRQAQELSRKAQAAPGEFAALAAQYSQDRDSAQRGGDSGLQPLQQ 227
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----N 599
+ S V V V +++ + V K+T + D+ LTQ +
Sbjct: 228 LLPEVRSAVARLKVGGV-SEVVQSAAGFHVLKLTEQQPARTASLDELRDRLTQALRAQRQ 286
Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ + + + + + ++++ ++ + L+
Sbjct: 287 EQIAKAYLEGMLNTATLSIDGAVLNQVLE 315
>gi|209693973|ref|YP_002261901.1| chaperone SurA precursor [Aliivibrio salmonicida LFI1238]
gi|208007924|emb|CAQ78055.1| chaperone SurA precursor [Aliivibrio salmonicida LFI1238]
Length = 436
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V V S S K +K G + E L +++L+ L+
Sbjct: 28 DRVIAIVDEGVVLQSDIETSLKTVKINAQEK-GQPLPEENV----LREQVLEKLILDTIQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E +G+ D R+ + KDNK + + A +G+ ++ + K +
Sbjct: 83 SQQAEKMGIRIDDTRLEEALNNI----AKDNKMTLAQLQQKAASQGLAYADFREQIRKEI 138
Query: 160 SRTDVVGMFVG 170
+ ++ V
Sbjct: 139 AASEARNAQVR 149
>gi|254560598|ref|YP_003067693.1| cell-binding factor 2 [Methylobacterium extorquens DM4]
gi|254267876|emb|CAX23742.1| putative cell-binding factor 2 precursor (Major antigen peb4A),
cbf2 [Methylobacterium extorquens DM4]
Length = 300
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/224 (13%), Positives = 65/224 (29%), Gaps = 10/224 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+++ + ++ LP VD K + D +A
Sbjct: 62 DLAIAAEDPALSLPGVDEGAKQNLLVDYMVDLKVGAQAAESAKVGDAPEFKRKLAYFRDK 121
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEG 514
+ E + E ++ K++K EEV ++ + + K G
Sbjct: 122 LLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAARVKGG 181
Query: 515 KNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
++F I + + + + + F V P++ + V
Sbjct: 182 EDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVKPFADAAFKMAPGQV-SDPVKTQFGWHV 240
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+V + PV D+ + Q + + I L+ V
Sbjct: 241 LRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284
>gi|187917986|ref|YP_001883549.1| basic membrane protein [Borrelia hermsii DAH]
gi|119860834|gb|AAX16629.1| basic membrane protein [Borrelia hermsii DAH]
Length = 344
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/199 (11%), Positives = 63/199 (31%), Gaps = 18/199 (9%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
K+ + F+ FL++ + + S + ++ VV + + + + F + + +
Sbjct: 4 IKVIFMGNFLCFLLFFIVG-ITSFAQNTPVVIINLHSNEIITKTEFDSKVNT----LKKT 58
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
G +++ K++L L++ Q G++ V I
Sbjct: 59 QGRDLSNAE------RKQVLQILIADVLFGQEALKQGIKVGDEEVMQTIRA----QFGLA 108
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+ + + +G N E + + LS ++ + + +
Sbjct: 109 SLTDEQIRQMIESQGTNWNELLSSMKRSLSAQKLILKMAQPKFSEIKTPSEKEVIEYYEA 168
Query: 191 SVDYIVLNNRHVPAIADPS 209
+ V + + S
Sbjct: 169 NKTKFVNPDISRISHVFFS 187
>gi|148655481|ref|YP_001275686.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus sp.
RS-1]
gi|148567591|gb|ABQ89736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus sp.
RS-1]
Length = 337
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 11/96 (11%), Positives = 26/96 (27%), Gaps = 2/96 (2%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
TV V + + +Q+ G + ++++++ +
Sbjct: 24 QTVARVDNVTLTRQELDQRIDRIEKGFAQQAGMGFP--LPSRLDIERELVSQFIDQQLTL 81
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
G+ G V +I R S +
Sbjct: 82 GLARQRGITVSDGEVNDQIERFRQQIQMGGGMSLEQ 117
>gi|56707610|ref|YP_169506.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110670081|ref|YP_666638.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
tularensis subsp. tularensis FSC198]
gi|254370127|ref|ZP_04986133.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254874430|ref|ZP_05247140.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56604102|emb|CAG45101.1| Peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
tularensis subsp. tularensis SCHU S4]
gi|110320414|emb|CAL08484.1| Peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
tularensis subsp. tularensis FSC198]
gi|151568371|gb|EDN34025.1| hypothetical protein FTBG_01231 [Francisella tularensis subsp.
tularensis FSC033]
gi|254840429|gb|EET18865.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
tularensis MA00-2987]
Length = 473
Score = 56.4 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 46/169 (27%), Gaps = 12/169 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + L + F + L ++ L +L+S + L
Sbjct: 58 NKTVAIVNSRPITSFELDQELAK-LEAMQPNSAFNTDP-------LKRQALQDLISQSVL 109
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 110 LQLAERNNIMISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIRDQL 165
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 166 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 214
>gi|221234696|ref|YP_002517132.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
gi|220963868|gb|ACL95224.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
Length = 449
Score = 56.4 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/140 (9%), Positives = 36/140 (25%), Gaps = 16/140 (11%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
S V + + + + + + ++++ L +L+
Sbjct: 54 SESVAAVVNDDIISSYDLMQRMRLLMATSGMQ------PTQENLPQIEQEALRSLIDERL 107
Query: 99 LDQFIED----IGLEA--DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
Q ++ + V +I + N+ + +L +GI +
Sbjct: 108 QMQELKRVEKQQKITIISTDKEVEEQIGDI----AQSNRLQPEQLKQQLVAQGIGLDTWR 163
Query: 153 DHYTKMLSRTDVVGMFVGGM 172
S + G
Sbjct: 164 AQLRAESSWQSWIQGRYGSR 183
>gi|167586945|ref|ZP_02379333.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ubonensis Bu]
Length = 259
Score = 56.4 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 10/180 (5%)
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-------- 498
+ P K + I++ + EV + K E
Sbjct: 81 NRPDVKAQVAVAQQTVVLRALIEDFLKKNQPTDAEVKARYDELVKGAANRELHLHHILVD 140
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPV 557
+A L+ + K G F D+ K + +D + K + + +
Sbjct: 141 NEQQAKDLIAKI-KAGAKFEDLAKQYSKDPGSGKNGGDLDWADPKAYVPEFAAAATKLQK 199
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + D+ + Q M + L + L+ Q V
Sbjct: 200 GQMTDEPVKTQFGWHIIRVDDVRSVAPPPFDQVKPQIAQQMVQQKLQAFEESLRQQAKVQ 259
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 3/123 (2%)
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLAD 327
+ ++ N+++A + +K G KF LA++ K G P A
Sbjct: 133 HLHHILVDNEQQAKDLIAKIKAGAKFEDLAKQYSKDPGSGKNGGDLDWADPKAYVPEFAA 192
Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
+ L K + FG+ I V +++ F +VK IA QM K +
Sbjct: 193 AATKLQKGQMTDEPVKTQFGWHIIRVDDVRSVAPPPFDQVKPQIAQQMVQQKLQAFEESL 252
Query: 388 YKR 390
++
Sbjct: 253 RQQ 255
>gi|46198541|ref|YP_004208.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB27]
gi|46196163|gb|AAS80581.1| probable peptidyl-prolyl cis-trans isomerase [Thermus thermophilus
HB27]
Length = 337
Score = 56.4 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 23/130 (17%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDAL---------FSVSGSSTVVSVGRQKVPFSS 55
+R +R+ +A WG+ L +++ V VG + + +
Sbjct: 18 MRSFTRSMLA-------------WGMRAFLLALTLLLVPMALAQGEVVAQVGPEAITREA 64
Query: 56 FINSWKQELGMISQKIGFVVNSE-RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
F + + ++G E RA L+ L L Q GL D
Sbjct: 65 FELRYGLFVRSALAQLGLPDTEEARALLAAYRPAFLEALAREKALLQRARKEGLYPDPAA 124
Query: 115 VWGEIARSPL 124
V +
Sbjct: 125 VEARVHALKE 134
>gi|32475679|ref|NP_868673.1| hypothetical protein RB9030 [Rhodopirellula baltica SH 1]
gi|32446221|emb|CAD76050.1| hypothetical protein-transmembrane prediction [Rhodopirellula
baltica SH 1]
Length = 827
Score = 56.4 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 50/162 (30%), Gaps = 17/162 (10%)
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
V L + E I A +LEEV +V +T + A + + K
Sbjct: 638 VDLENAKSYVSWKTEDIEAYTPELEEVRDEVILAIRTQEARNLAQKAAEGIAEAIGQGKK 697
Query: 516 NFRDIGKNLGASLLTT-NQINRMD------------NENKFFGYDGISQVFSGPVEMVKC 562
I K A+L T ++ E G + + VFS V VK
Sbjct: 698 LADAIPKGKEANLHTDLGPFTWLNMVGMMQTSLGNVPELNAVGNEFMQSVFSTEVGSVKV 757
Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD 604
P Y V + + E ++ +Q + +
Sbjct: 758 APNAPQSVYYVVQPIEFQP----EVEQLREQFSQPQQRFMAQ 795
>gi|148553334|ref|YP_001260916.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingomonas
wittichii RW1]
gi|148498524|gb|ABQ66778.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingomonas
wittichii RW1]
Length = 446
Score = 56.4 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 6/88 (6%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + + G + E L ++L NL+ Q
Sbjct: 58 AIVNGTIITQTDVEQRLALVIAA----NGGNIPDEE--RERLRLQVLRNLIDETLQIQEA 111
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNK 131
+E V R K K
Sbjct: 112 TAQKVEVSREEVQQTYDRVAANFRKSPK 139
>gi|90422049|ref|YP_530419.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB18]
gi|90104063|gb|ABD86100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB18]
Length = 310
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/158 (8%), Positives = 49/158 (31%), Gaps = 6/158 (3%)
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-----VSSKANQLVLEYSKEGKNFRD 519
+ ++ D +++V D K + + + + K+G +F +
Sbjct: 118 LLAVEGKAATTDAAMKKVYDDAAKQITGETEVRARHILVETEDEAKAIEDELKKGADFAE 177
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+ K ++ + + S F+ + P+++ + + KV
Sbjct: 178 LAKKKSKDPGASDGGDLGFFTKDQMVPEFSSVAFALEPGKI-SDPVKSQFGWHIIKVEEK 236
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + + + + + + + L+ +
Sbjct: 237 RNRKAPDFAQVKAQIETYVTRKAQADYVTKLRETAKIE 274
>gi|224456680|ref|ZP_03665153.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
tularensis subsp. tularensis MA00-2987]
gi|282158767|gb|ADA78158.1| Peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
tularensis subsp. tularensis NE061598]
Length = 467
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 46/169 (27%), Gaps = 12/169 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + L + F + L ++ L +L+S + L
Sbjct: 52 NKTVAIVNSRPITSFELDQELAK-LEAMQPNSAFNTDP-------LKRQALQDLISQSVL 103
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 104 LQLAERNNIMISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIRDQL 159
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 160 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 208
>gi|24375136|ref|NP_719179.1| survival protein surA [Shewanella oneidensis MR-1]
gi|81744686|sp|Q8EB95|SURA_SHEON RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|24349906|gb|AAN56623.1|AE015799_10 survival protein surA [Shewanella oneidensis MR-1]
Length = 434
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 10/152 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
++F F + + + V + V S N + S+
Sbjct: 7 LIFALFALAISQPTMAAPQPLDRVAVQINDGIVLESEITNMIDTVKANAKA-ANQSLPSD 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
A L ++++ L+ Q + IGL ++ I K +
Sbjct: 66 SA----LRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KMTVAQMQ 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++A EGI+ +Y + + ++ ++ + V
Sbjct: 118 QKIASEGISFSQYREQLREEITLGEIQRIQVQ 149
Score = 37.9 bits (85), Expect = 5.2, Method: Composition-based stats.
Identities = 19/287 (6%), Positives = 77/287 (26%), Gaps = 10/287 (3%)
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
+ + P ++ ++ + + + + +S + E
Sbjct: 147 QVQRRIQVSPQEITGLVKLIQEQGMKDVEYQIGHILIDVPNNPTSEQLEASSKRANAVLE 206
Query: 409 KIVSID------LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
++ S + + G + LF
Sbjct: 207 RLKSGEDFRRTAIASSSGPKALEGGIWDYMNINEMPTLFAEVINGAKKGDIIGPIKTGAG 266
Query: 463 YMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ ++I ++ + +++EEV + + + + + Q + + F D+
Sbjct: 267 FHIIKIMDARGLQTKEIEEVRARHILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLA 326
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ + + + +Q + P + + ++ +
Sbjct: 327 RQYSEDPGSATKGGELGWAEPSIYVPEFAQTLNSLSPDQISEPFRTTHGWHITQLEERRK 386
Query: 582 GPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
++ ++ + + + L + + +++ + V R
Sbjct: 387 TDATDQFNTNRAHQLIFRRKFNEELQNWLDEMRADAYIEVFQPESNR 433
>gi|258510728|ref|YP_003184162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257477454|gb|ACV57773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 314
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/178 (10%), Positives = 51/178 (28%), Gaps = 25/178 (14%)
Query: 17 FLVVLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
F+ ++ G+ + G S V VG+ + + G
Sbjct: 10 FVGAAAGALVVGGVWFGTYAAHGGGSVVAMVGKTPITRQELAQQSEAYAGSAM------- 62
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
L+ L++ A ++Q + A + + ++ + ++ S
Sbjct: 63 --------------LEELIANALIEQAAAKQHVTATNAEINQQLTAIEM---QNGITSDA 105
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
S LA+ + + ++++ + + + V + F
Sbjct: 106 QLNSLLAQNHMTKAQFLNQIRDNILASKLAEAQVHVTDKQIASYYKQNASMFTVPETR 163
>gi|134302454|ref|YP_001122424.1| hypothetical protein FTW_1602 [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134050231|gb|ABO47302.1| hypothetical protein FTW_1602 [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 467
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 46/169 (27%), Gaps = 12/169 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + L + F + L ++ L +L+S + L
Sbjct: 52 NKTVAIVNSRPITSFELDQELAK-LEAMQPNSAFNTDP-------LKRQALQDLISQSVL 103
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 104 LQLAERNNIMISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIRDQL 159
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 160 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 208
>gi|304406731|ref|ZP_07388386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
curdlanolyticus YK9]
gi|304344264|gb|EFM10103.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
curdlanolyticus YK9]
Length = 362
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 20/238 (8%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
E K+ + + S +I+ ++ + + + +K ++ L+ +V
Sbjct: 135 TELVKQEADKKGIVVSDADIAAELAVMVRRIGSEEALNEALKQNQLTVEDLYPDLIQQVR 194
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+ S+ H Y E++ + + + + + K
Sbjct: 195 LRKLLQSRIHITDQEVRDYY----TENLEYITQPEQVRASHILVETKAE----------A 240
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCF 563
++++ G +F I K + N + E FS V +
Sbjct: 241 DIIVKELNNGGDFATIAKQKSLDTGSKNAGGDLGYFERGVMDQSFEDAAFSLKVGEI-SK 299
Query: 564 PIENGLSYVVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P+++ Y + VT+ +EK LT +L + I L++Q +
Sbjct: 300 PVKSEFGYHIILVTDHKAAVTPTFEEEKATIREMLTTEKIYELAATFIEGLRAQAKIE 357
Score = 46.8 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 20/132 (15%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
G + V V ++ +G + LDNL+
Sbjct: 98 GGANVAVVNGVRITERQL----------YEGLLGGGRGKTQ----------LDNLIDTEL 137
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + G+ + E+A G + + + ++L E + +
Sbjct: 138 VKQEADKKGIVVSDADIAAELAVMVRRIGSEEALNEALKQNQLTVEDLYPDLIQQVRLRK 197
Query: 159 LSRTDVVGMFVG 170
L ++ +
Sbjct: 198 LLQSRIHITDQE 209
>gi|317401961|gb|EFV82563.1| parvulin-type peptidyl-prolyl cis-trans isomerase [Achromobacter
xylosoxidans C54]
Length = 258
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/149 (10%), Positives = 45/149 (30%), Gaps = 7/149 (4%)
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
E + + ++ V+ + AN L+ + F D+ K
Sbjct: 116 EYEKIKKEQAGKMEYKVRHILVEDEKT------ANDLLAQLKSNKGKFDDLAKKNSKDPG 169
Query: 530 TTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + + + V + P++ + + V +++ D
Sbjct: 170 SAEKGGDLGWAPPTNYVQPFAQAVTQLKKGQLVDKPVQTQFGWHIIMVDDTRPVEFPPLD 229
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L +M+ + L L+ + +
Sbjct: 230 QVRTQLEEMLRQQTLADYQKELREKAKIQ 258
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V +V + +P S K + S L +++ +++
Sbjct: 20 QNVATVNGKAIPQKSLDQFVKLLVSQ-----------GATDSPQLREQVKQEMINRQVFV 68
Query: 101 QFIEDIGL 108
Q E G+
Sbjct: 69 QAAEAGGI 76
>gi|254369748|ref|ZP_04985758.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
holarctica FSC022]
gi|157122707|gb|EDO66836.1| peptidyl-prolyl cis-trans isomerase [Francisella tularensis subsp.
holarctica FSC022]
Length = 469
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 47/169 (27%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + + N++ + L ++ L +L+S + L
Sbjct: 52 NKTVAIVNSRPITSFELDQELAKLEA---MQPNSAFNTDPLK---LKRQALQDLISQSVL 105
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ Y L
Sbjct: 106 LQLAERNNIMISNQQLDSAIQDIAAKNGV----SVESLKLNVEAAGMSFDSYKKRIIDQL 161
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + +
Sbjct: 162 MISQLQQQAIAQQVYVSPEEIQKYIKKHQKEFDREMSPVKLYTLKNLIV 210
>gi|220924508|ref|YP_002499810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
nodulans ORS 2060]
gi|219949115|gb|ACL59507.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
nodulans ORS 2060]
Length = 285
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 40/136 (29%), Gaps = 7/136 (5%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL-LTTNQINRMDNEN 541
+V V++ E A ++ K G++F + +
Sbjct: 142 EEEVHARHILVESEAEAKKIAGRI-----KGGEDFAKVAAETSKDPGSKAEGGDLGWFTK 196
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
+ F V P++ + V KV + PV D+ + + +
Sbjct: 197 ERMVPAFAEAAFKLDAGKV-SDPVKTQFGWHVIKVEEKRTKPVPSFDEMKEQIDTYLTRK 255
Query: 602 LLDSVIAYLKSQYSVT 617
+I L+ Q +
Sbjct: 256 TQQDIITKLREQAKIE 271
>gi|119944807|ref|YP_942487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
ingrahamii 37]
gi|119863411|gb|ABM02888.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychromonas
ingrahamii 37]
Length = 439
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/209 (12%), Positives = 65/209 (31%), Gaps = 11/209 (5%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
I L +LF + + V ++ + S + +
Sbjct: 7 ILLPLLFASLAATQVFAEKIPLDKIE--AVVNQEIILSSDLQRAQLDIQERYKNSDQTLP 64
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ + L K+ILD L++ Q + IGL + ++ + + + + +
Sbjct: 65 SGD-----KLTKQILDKLITDRLQLQIAQRIGLRINDAQLQQTVQQI----AQKEGLTSE 115
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
++L ++G N ++D L+ ++ + V + +
Sbjct: 116 QLQAKLEKQGKNYAAFVDTIRDELTINEIRQIEVRRRITISDQDVEQMVKRINAEGQKNT 175
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ H+ D ++ Q + K
Sbjct: 176 QFSFVHLLFKLDKESSAAEQQRIEKKAQD 204
Score = 37.5 bits (84), Expect = 6.4, Method: Composition-based stats.
Identities = 20/239 (8%), Positives = 66/239 (27%), Gaps = 5/239 (2%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
E + ++ L + + ++ ++ + G
Sbjct: 194 EQQRIEKKAQDLVKKIKLGANASQLALLNSEGPKASEGGDWGWRTINEMPTLFAGIFNEQ 253
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ + G ++ + + +E + + + ++
Sbjct: 254 QTNKGDVIGPFKSDLGLHIIKIMDKKGAQNVMTVEVNARHILIKSNIILSDQKAQKLLTG 313
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564
+ K+F + + + + + + + + S PV + P
Sbjct: 314 YRQDIINGKKSFAALAREYSQDPGSAVKGGDLGWADPSMYVPEFKELALSLPVGEISQ-P 372
Query: 565 IENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ + +V N + E K K S L Q + + + ++ + + +H+
Sbjct: 373 FRTMHGWHILEVINKRESDTTEQATKQKAYSLLFQQRFPAEVYAWMNEIRQEAYIKIHN 431
>gi|163867494|ref|YP_001608693.1| peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP
105476]
gi|161017140|emb|CAK00698.1| peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP
105476]
Length = 317
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 48/135 (35%), Gaps = 5/135 (3%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+VK VKT +E + ++++ +G+NF +I K + +
Sbjct: 157 EDEVKARHILVKTRKEA-----EAIIKHLNKGENFEEIAKKSSTDGSAAVGGDLGYFSHG 211
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
F V P+E+ + + K+ + +V D+ L + K
Sbjct: 212 QMVKPFEDAAFGLKVGEYTKQPVESPFGWHIIKLEDRRVKQPPTFDEVKEMLRTQLIKKR 271
Query: 603 LDSVIAYLKSQYSVT 617
+I L+S+ V
Sbjct: 272 YQELIVDLRSKIDVK 286
>gi|254479750|ref|ZP_05093031.1| PPIC-type PPIASE domain protein [Carboxydibrachium pacificum DSM
12653]
gi|214034310|gb|EEB75103.1| PPIC-type PPIASE domain protein [Carboxydibrachium pacificum DSM
12653]
Length = 271
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG------LDKKILDNLVSGATLD 100
+K+ + + ++Q I + + G + + +LD+LV+ L
Sbjct: 2 NGEKITNAEYQQIFEQVKEQIESAPTYTKDIWNQDYQGKKFLDFVKENVLDSLVAQKLLV 61
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
Q + + V E + F+ K K
Sbjct: 62 QEAKKKNITVTDKEVEEEYNKEKQFNSKVTK 92
>gi|189218309|ref|YP_001938951.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum
infernorum V4]
gi|189185167|gb|ACD82352.1| Parvulin-like peptidyl-prolyl isomerase [Methylacidiphilum
infernorum V4]
Length = 332
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/340 (12%), Positives = 88/340 (25%), Gaps = 63/340 (18%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
+ V + + FS + ++ + R + L L L+
Sbjct: 25 TQGSDGIAAIVNDKVITFSQVRKQVEPNEAVLRETYQGSELVNRIKEARL--SALRALID 82
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
+ Q + + + F+ L GI+E++Y
Sbjct: 83 RELIIQDFKSKKYAIPDSFIESRVRDIIRTQFDG---DRIAFIRTLQASGISEEQYKQQL 139
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ + + V S + +
Sbjct: 140 LEQIIVQAMRMKNVS---------------------------------EPVIISPYQIEK 166
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
+++ + + P ++ I + K N +L+
Sbjct: 167 YYQDHIAQFFEPPQVKLRIIFLQKTSFKDKRATVNGQLEE-------------------- 206
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSL 332
P ++ A E L+ G F +LA K + LG +K+ + +
Sbjct: 207 YDPARETATELLSKLQLGADFAELARSYSEGPKRMDGGDLGWVTKDSLRPEIAEAAFSMY 266
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
G + VI GY I + + + EV+ I
Sbjct: 267 --PGQTSGVIETLDGYYIIRLEDKRKGKLKPISEVRTQIE 304
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 41/123 (33%), Gaps = 6/123 (4%)
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
A +L+ + G +F ++ ++ + + + FS
Sbjct: 210 ARETATELLSKLQL-GADFAELARSYSEGPKRMDGGDLGWVTKDSLRPEIAEAAFSMYPG 268
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQY 614
IE Y + ++ + + G ++ + + + ++ + L + LK++
Sbjct: 269 QT-SGVIETLDGYYIIRLEDKRKGKLKPISEVRTQIEGLLIQEQRQKLQQQWLDNLKAKA 327
Query: 615 SVT 617
+
Sbjct: 328 FIK 330
>gi|29830081|ref|NP_824715.1| lipoprotein [Streptomyces avermitilis MA-4680]
gi|29607191|dbj|BAC71250.1| putative lipoprotein [Streptomyces avermitilis MA-4680]
Length = 219
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/195 (12%), Positives = 55/195 (28%), Gaps = 9/195 (4%)
Query: 20 VLFVPFLIWGLSDALFSVSGS---STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L + I + L + G VG Q++ + + +
Sbjct: 8 ALVLSAAIVAAAPLLTACGGEAHPGAAAVVGGQRITVAQLESRVNEVRTAQRAATTDDAQ 67
Query: 77 SER--ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
E+ A++ L + L +LV LD+ +D G+ + + + +
Sbjct: 68 YEQTIAKTGSLTRDTLHSLVLDRVLDRAAKDAGVSVT----RKDAQQMRTALEQQAGGTK 123
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ + L + G+ D + + M N K ++ +
Sbjct: 124 ALESAWLQQYGVAPGRLDDSLRTEIEAQKLATTLGADMNTVNGKAAFWKAMSEASKKLHV 183
Query: 195 IVLNNRHVPAIADPS 209
+ + S
Sbjct: 184 TLNPRYGTWDVQKSS 198
>gi|297374635|emb|CBL42922.1| PpiC-type peptidyl-prolyl cistrans isomerase [Candidatus
Magnetobacterium bavaricum]
Length = 323
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/200 (10%), Positives = 59/200 (29%), Gaps = 5/200 (2%)
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
K+ + + ++ +T+ + V + + + + + + V
Sbjct: 93 DKDPEFTKKITEFKKINLINTLIQKNVQAKNVTVTPEEAKKYYDENQKEFVMPEQVRAVH 152
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
+ +A L + K G + + VF
Sbjct: 153 ILVKTEQEAKDLYDKLKKGGDFAATAKSVSMDTATAEKGGDLDFFSRGQMEPSFDEAVFK 212
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ----MMNKDLLDSVIAYL 610
+ P++ Y + KV ++K + + + Q K D+ + +
Sbjct: 213 LKKGELST-PVKTSFGYHIIKVVDNKEAKTTDFESVKPMIIQYLTGEKQKKTFDTYYSSV 271
Query: 611 KSQYSVTVHDNLIQRYLDGE 630
+ Y+V + + +++ +
Sbjct: 272 EKNYNVNIDTKALDEFINKQ 291
>gi|167626495|ref|YP_001676995.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
philomiragia subsp. philomiragia ATCC 25017]
gi|167596496|gb|ABZ86494.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Francisella
philomiragia subsp. philomiragia ATCC 25017]
Length = 470
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/169 (10%), Positives = 51/169 (30%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ TV V + + + M ++ + S+ + ++ L +L++ + L
Sbjct: 53 NKTVAIVNSKPITSFELDQEVAKFEAM------NPNSNFHSDSLQVRREALQDLIAQSVL 106
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E + + ++ I +G S + + G++ + Y + L
Sbjct: 107 LQLAERNNIIISNQQLDAAIKDIAAKNGV----SVESLKLNVEASGMSFESYKKRIREQL 162
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + Q + + + +
Sbjct: 163 MVSQLQQQAISQQVYVSPEEIQKYIKKHQEQFDREMAPIKLYTLKNLIV 211
>gi|113969251|ref|YP_733044.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
gi|121956472|sp|Q0HLT0|SURA_SHESM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|113883935|gb|ABI37987.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp. MR-4]
Length = 434
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 49/152 (32%), Gaps = 10/152 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
++F F + + + V + V S N + S+
Sbjct: 7 LIFALFALAISQPTMAAPQPIDRVAVQINDGIVLESEITNMIDTVKANARA-ANQSLPSD 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
A L ++++ L+ Q + IGL ++ I K +
Sbjct: 66 SA----LRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KMTVAQMQ 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ EG++ +Y + + ++ ++ + V
Sbjct: 118 QKIESEGLSFGQYREQLREEITLGEIQRIQVQ 149
>gi|126173223|ref|YP_001049372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS155]
gi|125996428|gb|ABN60503.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella baltica
OS155]
Length = 434
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 10/152 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
++F F + L + V + V S N ++ + S+
Sbjct: 7 LIFALFALAISQPTLAAPQPLDRVAVQINDGIVLESEITNMIDTVKAN-AKTANQSLPSD 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
A L ++++ L+ Q + IGL ++ I K S
Sbjct: 66 SA----LRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KISVAQMQ 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ EG++ +Y + + ++ ++ + V
Sbjct: 118 QKIESEGLSFSQYREQLREEITLGEIQRIQVQ 149
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 15/203 (7%), Positives = 57/203 (28%), Gaps = 4/203 (1%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD- 485
G + LF + ++I ++ + +++EEV
Sbjct: 231 GIWDYMNINEMPTLFAEVINGAKTGDIIGPIKSGAGFHIIKIMDARGLQTKEIEEVRARH 290
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
+ + + + + Q + + F D+ + + + +
Sbjct: 291 ILLKPSPILSEDRAKAMLEQFLKQIRSGEAKFEDLARQYSEDPGSATKGGELGWAEPSIY 350
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDL 602
+Q + P + + ++ + ++ ++ + + +
Sbjct: 351 VPEFAQTLNSLKTDQISEPFRTTHGWHITQLEERRKTDATDQFNSNRAHQLIFRRKFNEE 410
Query: 603 LDSVIAYLKSQYSVTVHDNLIQR 625
L + + ++S + + R
Sbjct: 411 LQNWLDEMRSDAYIEIFQPETNR 433
>gi|283781300|ref|YP_003372055.1| hypothetical protein Psta_3534 [Pirellula staleyi DSM 6068]
gi|283439753|gb|ADB18195.1| hypothetical protein Psta_3534 [Pirellula staleyi DSM 6068]
Length = 816
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/256 (12%), Positives = 73/256 (28%), Gaps = 30/256 (11%)
Query: 387 DYKRLEEFLALGTSMDEISRREKIV-SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + T + + + +L +DF+ + LL+
Sbjct: 555 ALSKKYNLESGTTELMSAAESYESELGKNLIAIDFSQGFQQFDFAQIAYSGSDLLYNPRE 614
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+GS ++ + + PA D +EV DV +K + +A +
Sbjct: 615 MMSRGDGV----FGNGSCIFWR-TQEEPAADVTFDEVKDDVIAFYKMKEALTLAKEEAQK 669
Query: 506 LVLEYSKEGK------NFRDIGKNLGASLLTTN----QINRMDNE------NKFFGYDGI 549
V + G + + K S T + G D
Sbjct: 670 YVDKVKAAGSVEKAVPDAAKVVKPAPFSWFTAGFTAMGMGSNGPTLSDVDGIPLAGDDFR 729
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD--------KFISYLTQMMNKD 601
VF + G V ++ + + ++ + + + + +
Sbjct: 730 RAVFDLKPGEACVAVDQPGKVVYVVRMISDEPSEEIRREKFLETGASQQVQQMAMIEARQ 789
Query: 602 LLDSVIAYLKSQYSVT 617
+ ++ + ++YSV
Sbjct: 790 SMMKMLNAIDTEYSVK 805
>gi|85711793|ref|ZP_01042849.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
baltica OS145]
gi|85694408|gb|EAQ32350.1| Periplasmic parvulin-like peptidyl-prolyl isomerase [Idiomarina
baltica OS145]
Length = 432
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/176 (12%), Positives = 47/176 (26%), Gaps = 12/176 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S KQ ++ ++ L + + L+
Sbjct: 31 DRVAVIVDDGVILESQIEQLIKQV-----KQSENFSSANAPSDKVLRTQATERLIQQELQ 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E +G+E ++ I+R +D S D G + + + +
Sbjct: 86 LQMAERMGIEVSEAQLDQAISRI----AQDRGMSVDELRENTINSGQSWPAFREQIKTEI 141
Query: 160 SRTDVVGMFVG---GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ V V + P + + +Y + P+
Sbjct: 142 ITSQVERAAVQRRVSVTPQEVENLVNLIEQNDASPTEYRLRQILIGVDSDAPNEKQ 197
>gi|114327287|ref|YP_744444.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
CGDNIH1]
gi|114315461|gb|ABI61521.1| peptidyl-prolyl cis-trans isomerase [Granulibacter bethesdensis
CGDNIH1]
Length = 346
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 1/118 (0%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+A +++ E K G +F I K N + + + F+
Sbjct: 207 EDEAKRIIAEL-KAGGDFAKIAKERSKDPGAANGGDLGFFKQADMVPEFSKAAFALKNNE 265
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V P+ + V + + P Q ++ L Q + +D + ++ V
Sbjct: 266 VSPTPVHTQFGWHVIQTLEHRRAPAQTFEQARDQLRQQVIQDGVKDLVTNAMKGAKVE 323
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 10/69 (14%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S+ V V + ++ + + Q V+ +L+ ++ L
Sbjct: 86 STVVGRVNGADIHLGDLEDAARNLPEQMRQAPPQVIYP----------ILLNQMLQREAL 135
Query: 100 DQFIEDIGL 108
Q GL
Sbjct: 136 VQAARKEGL 144
>gi|197334077|ref|YP_002155047.1| chaperone SurA [Vibrio fischeri MJ11]
gi|197315567|gb|ACH65014.1| chaperone SurA [Vibrio fischeri MJ11]
Length = 437
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 9/168 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S S K +K G + E L +++L+ L+
Sbjct: 28 DRVVAIVDEGVVLQSDIDTSLKTVKINAQEK-GQPLPDEAV----LREQVLEKLIVDTIQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E +G+ D R+ + K+N + + A +G+ + + K +
Sbjct: 83 SQQAEKMGIRIDDTRLEAALNDI----AKENNMTLAQLQQKTAAQGLPYANFREQIRKEI 138
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ ++ V ++ + + H+ +
Sbjct: 139 AASEARNAQVRRRINILPQEVESLAQLLAEETQATVQYKISHIQLRVE 186
>gi|188586655|ref|YP_001918200.1| SurA domain [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351342|gb|ACB85612.1| SurA domain [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 232
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 6/217 (2%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ K+ L+ L L + V V Q++ +KQ+L + Q G
Sbjct: 3 IKKVVLIALSALLLFV----LTACGNDDEVVAIVNDQELKEEDLDR-FKQQLIQMRQLYG 57
Query: 73 FVV-NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
V + + L K+ ++ +V+ L Q E+ G+ D V E+ D +
Sbjct: 58 MPVDEEDEEQMDELQKEAVEEMVTETVLLQKAEEEGITVDEELVENELEAIENQFESDEQ 117
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + L E + + + + L V + + +R+ E
Sbjct: 118 MEEALDMYGLTSEDLESEIRNSYMIEELITGLVDEDDISQDDIEISEEELRERYEHEKSR 177
Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ P D + Q ++ K + E
Sbjct: 178 ATQNGEDEEDFPEFEDRKEELEQQLIDEAKQDKMQDE 214
>gi|332983150|ref|YP_004464591.1| hypothetical protein Mahau_2629 [Mahella australiensis 50-1 BON]
gi|332700828|gb|AEE97769.1| hypothetical protein Mahau_2629 [Mahella australiensis 50-1 BON]
Length = 240
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 43/136 (31%), Gaps = 14/136 (10%)
Query: 7 KASRTWVAKIFLVVLFVPFLI--WGLSDALFS-----------VSGSSTVVSVGRQKVPF 53
K + T +A + +L + F G +++++S +T+ ++G ++
Sbjct: 3 KKTGTIIAIAAVALLLIAFFAINTGFAESMWSYIGEQAASIREQKNDATIATIGDARITQ 62
Query: 54 SSFINSWKQELGMISQKIGF-VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
+ + + +K+LD+L+ L Q G
Sbjct: 63 NDLDLAMLMREQAYELQSKEIDELQNMMPEQPTKEKVLDSLIENEILYQEAVKRGCSVSL 122
Query: 113 GRVWGEIARSPLFHGK 128
+ + + +
Sbjct: 123 DEAKKYLEDNKKIYDE 138
>gi|220932946|ref|YP_002509854.1| peptidil-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
gi|219994256|gb|ACL70859.1| peptidil-prolyl cis-trans isomerase [Halothermothrix orenii H 168]
Length = 332
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/196 (8%), Positives = 61/196 (31%), Gaps = 14/196 (7%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
+ R+ + LV++ + + + V +++ S + + +
Sbjct: 2 RFRRSVFLFLALVLVIS----FSVLAEDKVEKTDNIAAVVDGKEITISEVD-EYARTRDV 56
Query: 67 ISQKIGFVVNSERAR---------SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
I Q + K LD L++ L + ++ G+ +
Sbjct: 57 IMQLYQANGEFTQLILSTEAGNELINEYRKLKLDELITRELLIKEAKNQGINVSKEEMDK 116
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ N + + + L ++GI + + + ++ + ++
Sbjct: 117 IFNEQIEMVKQKNNINEEQLLQALNQQGIESLDQYKNLFFEQNGDLLLINKLREKVMEDV 176
Query: 178 LLDQAKRFYFENRSVD 193
++++ + + + +
Sbjct: 177 SVEESAVREYYDNNKE 192
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/245 (12%), Positives = 76/245 (31%), Gaps = 18/245 (7%)
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
+A + K + + + L ++ G + + +
Sbjct: 100 KEAKNQGINVSKEEMDKIFNEQIEMVKQKNNINEEQLLQALNQQGIESLDQYKNLFFEQN 159
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
L + + + +D +V +++ + T +K V+T +
Sbjct: 160 GDLLLINKLREKVMEDVSVEESA--------VREYYDNNKENFKHGTQIKARHILVETEK 211
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
E N+L + G +F ++ K + N + + F+ V
Sbjct: 212 EAREILNEL-----ENGADFGEMAKEYSTGPSSKNGGDLGYFGKGRMVPEFEEAAFALKV 266
Query: 558 EMVKCFPIENGLSYVVFKVTNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ P++ Y + KV + + KDK + L Q + ++ + L+ +
Sbjct: 267 GQI-SDPVKTQYGYHIIKVEDKVEEGITPFDEVKDKIKNNLLQQKQQTAWNNFLKELRDK 325
Query: 614 YSVTV 618
+ +
Sbjct: 326 AEIEI 330
>gi|301059212|ref|ZP_07200150.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
gi|300446702|gb|EFK10529.1| PPIC-type PPIASE domain protein [delta proteobacterium NaphS2]
Length = 343
Score = 56.0 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/250 (12%), Positives = 76/250 (30%), Gaps = 15/250 (6%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ L + + + E +++ IV + F + + K+ + E++L R +
Sbjct: 94 ENIKTALLDNIIDRYLILEYAKQHGIVVSEKE---FQARLIDIKKGYSESLFEEMLLRKW 150
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE------E 498
G D K + + P ++++ +K +
Sbjct: 151 GDPDVWMKRFKEQIVIEKVINAVTVHMEPPDYKEMKARFESNPNHYKAPEEIRFRQIFCR 210
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
KAN+L + + G++ + + + +F
Sbjct: 211 TKKKANELYGKI-RSGESLASLARKYSEGPEAVDGGEVGWVAKGILDESLDKMLFQMAPG 269
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQY 614
+ + Y +F+V + + G + + I + Q + + L+S
Sbjct: 270 DI-SPVTKGASGYHIFEVMDRRPGGFRAFSEIIDGIEEDLCQTRRMSFIKEWLQSLRSDI 328
Query: 615 SVTVHDNLIQ 624
V ++ I
Sbjct: 329 RVKINQKAID 338
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/187 (11%), Positives = 54/187 (28%), Gaps = 14/187 (7%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K +FL+V L + V+ VG Q++ +
Sbjct: 26 KRKSNIFYTLFLLVTAFGGLFFVEGCDRIGKDPGPVVLVVGDQQLTADVLKQNLLLAS-- 83
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+ + + +LDN++ + ++ + G+ +
Sbjct: 84 ------EDLPIPAKETENIKTALLDNIIDRYLILEYAKQHGIVVSEKEFQARLIDIK--- 134
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+S +F L R+ + ++ + + + V+ M P + +A+
Sbjct: 135 ---KGYSESLFEEMLLRKWGDPDVWMKRFKEQIVIEKVINAVTVHMEPPDYKEMKARFES 191
Query: 187 FENRSVD 193
N
Sbjct: 192 NPNHYKA 198
>gi|59710895|ref|YP_203671.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Vibrio fischeri
ES114]
gi|75507097|sp|Q5E863|SURA_VIBF1 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|59478996|gb|AAW84783.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Vibrio fischeri
ES114]
Length = 437
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 52/168 (30%), Gaps = 9/168 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S S K +K G + E L +++L+ L+
Sbjct: 28 DRVVAIVDEGVVLQSDIDTSLKTVKINAQEK-GQPLPDEAV----LREQVLEKLIVDTIQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E +G+ D R+ + K+N + + A +G+ + + K +
Sbjct: 83 SQQAEKMGIRIDDTRLEAALNDI----AKENNMTLAQLQQKTAAQGLPYANFREQIRKEI 138
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ ++ V ++ + + H+ +
Sbjct: 139 AASEARNAQVRRRINILPQEVESLAQLLAEETQATVQYKISHIQLRVE 186
>gi|262370367|ref|ZP_06063693.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
gi|262314709|gb|EEY95750.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter johnsonii SH046]
Length = 439
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/374 (10%), Positives = 92/374 (24%), Gaps = 47/374 (12%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
F + V V + S S + + + V E+ L ++ L+ L+
Sbjct: 31 FVHASDEVVAVVDNSVILKSDLEASMTELKHQLESQ-KKQVPPEQ----YLAQQALEQLI 85
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARS---------PLFHGKDNKFSHDVFVSRLAREG 145
T + ++ ++ D + + F K +K + + S +R
Sbjct: 86 IRQTQLEQVKRYNIQPDEKSLNEAVLNVAKQSGSTSLEAFQQKLDKMAPGTYASLRSRVA 145
Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
+ + SR + V + + +
Sbjct: 146 EDLAINRLRQQIVTSRIQISDQDVKNFLNTPQGQAALGNQVHVLHVRVSGDNADTVAKQV 205
Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-------- 257
K + + + + + ++ LQ
Sbjct: 206 KTVLANDNDVAAIAKKFSTAGTKVEGADMGFRALSDIPSELAARVSPLQVGQITDLITVR 265
Query: 258 ----------EKNKEKYFSPEIRTVEQLVFPN---------QKEADEAFQSLKKGKKFIQ 298
K E+ ++ ++ + + ++KG+ F
Sbjct: 266 DGVHLLKLVERKGAEQKAIVPQYKARHILIQPSEVVSPENAKQMIESLYNRVQKGEDFAV 325
Query: 299 LAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA SLG S + + G + FG+ I V+
Sbjct: 326 LASTYSNDTGSARDGGSLGWVSPGVMVPQ--FEETMKNTPVGQTSKPFQTQFGWHILQVT 383
Query: 355 NIKPSFTVSFQEVK 368
+ + + +
Sbjct: 384 ETRQQDMTAEYQER 397
Score = 41.8 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 16/203 (7%), Positives = 58/203 (28%), Gaps = 3/203 (1%)
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
A+ L + + DG ++ ++ + + +
Sbjct: 232 ADMGFRALSDIPSELAARVSPLQVGQITDLITVRDGVHLLKLVERKGAEQKAIVPQYKAR 291
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
+ + E + + + + ++G++F + + + +
Sbjct: 292 HILIQPSEVVSPENAKQMIESLYNRVQKGEDFAVLASTYSNDTGSARDGGSLGWVSPGVM 351
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKFISYLTQMMN-KDL 602
+ P + + + +VT ++ + +++ +
Sbjct: 352 VPQFEETMKNTPVGQTSKPFQTQFGWHILQVTETRQQDMTAEYQERMARQILGERQFDAE 411
Query: 603 LDSVIAYLKSQYSVTVHDNLIQR 625
LDS + +++ V + D + R
Sbjct: 412 LDSWLRETRNRAFVEIKDPNLDR 434
>gi|296282383|ref|ZP_06860381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Citromicrobium
bathyomarinum JL354]
Length = 492
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/196 (10%), Positives = 47/196 (23%), Gaps = 12/196 (6%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + + L + + +++ ++ L ++L NL+ Q
Sbjct: 102 AKVNGTVITGTDIDHRVALVLAASER---KEIPADQLQA--LRMQVLRNLIDETLQIQAA 156
Query: 104 EDIGLEADHGRVWG--EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+E V I F + L G + ++
Sbjct: 157 AAQDMEVSSEEVNQRYAILAQQNFGSNPQQMDK-----FLIAAGSSPATLKRQIQGEIAW 211
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
++ V + + + + A + E+
Sbjct: 212 QMLLRRNVAPFINVSAEEVNDTIERLKTSRGQEEYRLAEIYLSATPETAATVEANAEQIM 271
Query: 222 DNYRAPEYKRISYILF 237
D RA + F
Sbjct: 272 DQIRAGGSFQAYARQF 287
>gi|49473855|ref|YP_031897.1| peptidyl-prolyl cis-trans isomerase [Bartonella quintana str.
Toulouse]
gi|49239358|emb|CAF25691.1| Peptidyl-prolyl cis-trans isomerase [Bartonella quintana str.
Toulouse]
Length = 317
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 5/135 (3%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+VK VKT +E + +++ +G++F + K + +
Sbjct: 157 EDEVKARHILVKTKKEA-----EAIIKRLSKGESFEAVAKKNSTDGSAAVGGDLGYFSHG 211
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
F V P+E+ + V KV + ++ D L + K+
Sbjct: 212 QMVKPFEDAAFGLKVGEYTKKPVESPFGWHVIKVEDRRLKQPPIFDDVKEMLRTQLIKER 271
Query: 603 LDSVIAYLKSQYSVT 617
+I L++ V
Sbjct: 272 YQKLIVDLRNTIDVK 286
>gi|253998626|ref|YP_003050689.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
SIP3-4]
gi|313200700|ref|YP_004039358.1| ppic-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
MP688]
gi|253985305|gb|ACT50162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
SIP3-4]
gi|312440016|gb|ADQ84122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
MP688]
Length = 267
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/215 (10%), Positives = 60/215 (27%), Gaps = 10/215 (4%)
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
VD + V + + Q R P + +++ +
Sbjct: 52 QNVDDNVRTVIVNRLISSELIYQEAQRSGFDKRPEYVAKQELAARELLVNSYLEDYLKKN 111
Query: 476 DRKLEEVLTDVKK--------DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
V + +K ++ ++A ++ + K G +F + K
Sbjct: 112 PVSDAAVKAEYEKYKQEVGDKEYNARHILVATEAEAKDIIAQLGK-GADFAKLAKEKSKD 170
Query: 528 LLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
+ V P++ + V K+ + +
Sbjct: 171 PGGKENGGDLGWFAPGSMVKPFSEAVTKMKKGSYTADPVQTQFGWHVIKLEDVRDAQPMP 230
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+K L + + + L+ +++ L+S+ + +
Sbjct: 231 FEKVQDALKKQLQQRQLEKLLSDLRSKAKIVENPA 265
Score = 41.4 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 11/94 (11%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
I + + +++ V +V + + S F K G V+
Sbjct: 9 LAIVAIGISSLAMAADPAVATVNGKPIKQSLFDYITKDAAAR-----GQNVDD------N 57
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ I++ L+S + Q + G + V +
Sbjct: 58 VRTVIVNRLISSELIYQEAQRSGFDKRPEYVAKQ 91
>gi|329941154|ref|ZP_08290433.1| lipoprotein [Streptomyces griseoaurantiacus M045]
gi|329299685|gb|EGG43584.1| lipoprotein [Streptomyces griseoaurantiacus M045]
Length = 213
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/177 (14%), Positives = 49/177 (27%), Gaps = 6/177 (3%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF--VVNSERARSVGLDKKILDN 92
S S VG Q++ + N ++ E AR+ L + L
Sbjct: 24 GSESHPGAAAVVGGQRITVAQLENRVEEVRSAQRDATADEAQYAQEIARTGSLTRDTLHT 83
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
LV LD+ +D G+ V + S + + L + G+
Sbjct: 84 LVLDRVLDRAAKDAGVTVTERDV-QAMRTSLEQQAGGARGLRTAW---LRQYGVAPARLD 139
Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
+ + + M S K ++++ V + S
Sbjct: 140 ESLRTEVRAQKLAAALGADMNTSTGKAVFWKSLSDASKALHIDVNPRYGSWDVQKSS 196
>gi|55980571|ref|YP_143868.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB8]
gi|55771984|dbj|BAD70425.1| peptidyl-prolyl cis-trans isomerase [Thermus thermophilus HB8]
Length = 337
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 23/130 (17%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDAL---------FSVSGSSTVVSVGRQKVPFSS 55
+R +R+ +A WG+ L +++ V VG + + +
Sbjct: 18 MRSFTRSMLA-------------WGMRAFLLALTLLLVPMALAQGEVVAQVGPEAITREA 64
Query: 56 FINSWKQELGMISQKIGFVVNSE-RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
F + + ++G E RA L+ L L Q + GL D
Sbjct: 65 FELRYGLFVRSALAQLGLPDTEEARALLAAYRPAFLEALAREKALLQRAREEGLYPDPAA 124
Query: 115 VWGEIARSPL 124
V +
Sbjct: 125 VEARVHALKE 134
>gi|258545949|ref|ZP_05706183.1| peptidyl-prolyl cis-trans isomerase SurA [Cardiobacterium hominis
ATCC 15826]
gi|258518827|gb|EEV87686.1| peptidyl-prolyl cis-trans isomerase SurA [Cardiobacterium hominis
ATCC 15826]
Length = 433
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 55/170 (32%), Gaps = 23/170 (13%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-------------SVGRQKVPFSSFINSW 60
K L+ + I GL ++ V + +
Sbjct: 1 MKTLLIPALLAMSITGLQAPAQNLKYGPASAPKGASQPIDEIGLVVNDEAITRRQLTQEI 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +++ + L+ ++L++++ L Q + +GLE + IA
Sbjct: 61 EAARRNLPKELKLP-------AGELEHQLLEHVIMNHLLAQIEKKVGLEISEDELNTAIA 113
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ G++ ++ G++ + + K L++ + VG
Sbjct: 114 QIA---GRNKVSEQKLYAQAQRDTGLSRDAFREQVRKSLAQEHMKEGMVG 160
Score = 41.8 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 30/355 (8%), Positives = 93/355 (26%), Gaps = 12/355 (3%)
Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
+ L+ +K+ + Q+A S + + + + +
Sbjct: 85 HVIMNHLLAQIEKKVGLEISEDELNTAIAQIAGRNKVSEQKLYAQAQRDTGLSRDAFREQ 144
Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
+ + + G+ + + + ++ + + D
Sbjct: 145 VRKSLAQEHMKEGMVGADINITERQVDEYIAK-----LAREQGSTIHVQDLLIPLPEGDA 199
Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
+ + + R+ ++ AG + R K
Sbjct: 200 QSRAGEVDAKIREVSQALRDSGGNLQQASARVAGARYNDLGDVNLGRIPPRFARALAKLG 259
Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN-QLV 507
+ + D ++++ + + DV + +SKA +
Sbjct: 260 AGEIVESPVVDDDGMHFLKVAS-KHSAEGNYTLAEADVSHILLRNNDGRDDNSKARIDAI 318
Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ G +F + + + + + FG + + + V + PI+
Sbjct: 319 YRELQAGADFASLARRYSEDAQSAAKGGDLGWVSADQFGGELAQAIETQAVGSI-SKPIK 377
Query: 567 NGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
Y + V + E +++ L + + L+ + + +
Sbjct: 378 TPYGYHILLVRERRQSDKSEAVVREQIKRNLYAKALDEAWQQRLQSLRREAYIDI 432
>gi|309390238|gb|ADO78118.1| SurA domain protein [Halanaerobium praevalens DSM 2228]
Length = 241
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/221 (13%), Positives = 74/221 (33%), Gaps = 8/221 (3%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN-----SWKQE 63
+ V+ + L VL VP ++ S V V +++ ++
Sbjct: 2 KKFLVSFLLLTVLMVPMNVFAQDVDSDSKQEPKVVAVVNGEEITAQELAQNAKLNQILRQ 61
Query: 64 LGMISQKIGFVVNSERARS---VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
L + Q++ ++ + A + L K LD+L+ L Q ++D + +
Sbjct: 62 LSQVDQQLVKLLTNSEAGNKVLADLRKAKLDSLIDNTLLKQAVKDSDINLSQEEIDEIYN 121
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ K NK F+S L ++G + + + + + + + + +
Sbjct: 122 KQKSSILKQNKMDEKQFLSVLKKQGFENEAAYKNEFANNPQIKINKLIEKEVVDNIEVSE 181
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ + +E + P + + ++ +
Sbjct: 182 KEIKEAYEQNKDAFAQTGQDVSYEQIKPRLEQMLKQQKQNQ 222
>gi|294650562|ref|ZP_06727919.1| peptidyl-prolyl cis-trans isomerase SurA [Acinetobacter
haemolyticus ATCC 19194]
gi|292823559|gb|EFF82405.1| peptidyl-prolyl cis-trans isomerase SurA [Acinetobacter
haemolyticus ATCC 19194]
Length = 437
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/405 (8%), Positives = 92/405 (22%), Gaps = 56/405 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + L L S F+ V V + S + +
Sbjct: 4 KHFQHIFRATVLAALISS------SMHSFAQPADEVVAIVDSSVILKSDLVQGIAEAEHQ 57
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI------- 119
+ + V + + ++LD L+ + ++ G++ D + +
Sbjct: 58 LKAQNQTVPPKQYLQM-----QVLDQLIIRQAQLEQVKRYGIKPDENSLNAAVLRVANQS 112
Query: 120 --ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
F K + + + + R + +++SR + V S
Sbjct: 113 GSNSLSAFQQKLDAIAPGTYENLRNRIAEDLAIGRLRQQQVMSRIKISDHDVENFLKSPE 172
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADP----------------------------- 208
NN +
Sbjct: 173 GQAALGTQVHVLHMRISGTNNNEVQKVAEEVRRSLATSNDPKAISSKLSTGTVTVDGADM 232
Query: 209 -----SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
S V + ++ + L +Y+
Sbjct: 233 GFRALSEIPTELAARVTPLQVGQTTGLVNVRDGTHVLKLLERKQNDQRALVPQYKTRHIL 292
Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
+ E+ + ++ + + + G + +LG + +
Sbjct: 293 IQTSEVVSSDRAKQMIDSLYNRIKAGEDFSTLAATFSNDPGSARDGGNLGWVNASVMVPE 352
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
+ + G + FG+ I V++ + + +
Sbjct: 353 --FEKVMKEIPVGQLSEPFQSQFGWHILEVTDTRQQDMTKEAQER 395
Score = 37.9 bits (85), Expect = 5.7, Method: Composition-based stats.
Identities = 21/207 (10%), Positives = 59/207 (28%), Gaps = 3/207 (1%)
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
D A+ L V + DG+++ ++ +
Sbjct: 221 STGTVTVDGADMGFRALSEIPTELAARVTPLQVGQTTGLVNVRDGTHVLKLLERKQNDQR 280
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ + T + + + + + + K G++F + +
Sbjct: 281 ALVPQYKTRHILIQTSEVVSSDRAKQMIDSLYNRIKAGEDFSTLAATFSNDPGSARDGGN 340
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISY 593
+ N +V P ++ + + +VT+++ ++
Sbjct: 341 LGWVNASVMVPEFEKVMKEIPVGQLSEPFQSQFGWHILEVTDTRQQDMTKEAQERMARQI 400
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHD 620
L + + +DS L++ V + D
Sbjct: 401 LGERQFETEVDSWTRELRANAYVEIKD 427
>gi|308271396|emb|CBX28004.1| hypothetical protein N47_G33280 [uncultured Desulfobacterium sp.]
Length = 332
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/292 (13%), Positives = 95/292 (32%), Gaps = 9/292 (3%)
Query: 51 VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
+ S + + I G+ E A + + +LD L++ DQ I+ G+
Sbjct: 48 ITLSDLEVATRAYTEKIKS-AGYGFEEEHAMLFKMREDMLDQLINRKLTDQEIKKYGIST 106
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ + I R + + + + + ++G+ ++ D + + R+ V+ + V
Sbjct: 107 NDKEIDNSIERIK----EAKYLTDEELRNMVTKDGMTFDDFRDAIKENILRSKVLDIEVK 162
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
+ + + Y+++ DY+ N H+ I +N+ + + Y
Sbjct: 163 SKIV---ITKEDTKAYYDSHKSDYMPQNKYHLFNIIIKTNSEADGDDKHEAMSVMEKIYA 219
Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE-AFQS 289
++ + E S E ++ ++ L + E
Sbjct: 220 KLKQGQPFEEVSKDSAESSGVENSDLGYFKADELSPQIQDAIKNLKQKEFTKILETDLGY 279
Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
K I++ + + + I D + + L KK +
Sbjct: 280 QIIYIKDIEVKPGKSLDEAAAGIQGILFNDIIDKNFKLWMEQLRKKSYIKII 331
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 19/263 (7%), Positives = 75/263 (28%), Gaps = 17/263 (6%)
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
++ + + + ++L + + + + + +
Sbjct: 72 EEEHAMLFKMREDMLDQLINRKLTDQEIKKYGISTNDKEIDNSIERIKEAKYLTDEELRN 131
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
V ++ SK + + + + +++ D + + K
Sbjct: 132 MVTKDGMTFDDFRDAIKENILRSKVLDIEVKSK--IVITKEDTKAYYDSHKSDYMPQNKY 189
Query: 489 DWKTVKTAEEVSSKAN---------QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
+ + + + + K+G+ F ++ K+ A +
Sbjct: 190 HLFNIIIKTNSEADGDDKHEAMSVMEKIYAKLKQGQPFEEVSKD-SAESSGVENSDLGYF 248
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
+ + + + +E L Y + + + +V P + D+ + + ++
Sbjct: 249 KADELSPQIQDAIKNLKQKEF-TKILETDLGYQIIYIKDIEVKPGKSLDEAAAGIQGILF 307
Query: 600 KDL----LDSVIAYLKSQYSVTV 618
D+ + L+ + + +
Sbjct: 308 NDIIDKNFKLWMEQLRKKSYIKI 330
>gi|254975855|ref|ZP_05272327.1| putative protein export chaperone [Clostridium difficile QCD-66c26]
gi|255093242|ref|ZP_05322720.1| putative protein export chaperone [Clostridium difficile CIP
107932]
gi|255307280|ref|ZP_05351451.1| putative protein export chaperone [Clostridium difficile ATCC
43255]
gi|255314984|ref|ZP_05356567.1| putative protein export chaperone [Clostridium difficile QCD-76w55]
gi|255517659|ref|ZP_05385335.1| putative protein export chaperone [Clostridium difficile QCD-97b34]
gi|255650769|ref|ZP_05397671.1| putative protein export chaperone [Clostridium difficile QCD-37x79]
gi|260683854|ref|YP_003215139.1| putative protein export chaperone [Clostridium difficile CD196]
gi|260687514|ref|YP_003218648.1| putative protein export chaperone [Clostridium difficile R20291]
gi|306520675|ref|ZP_07407022.1| putative protein export chaperone [Clostridium difficile QCD-32g58]
gi|260210017|emb|CBA64063.1| putative protein export chaperone [Clostridium difficile CD196]
gi|260213531|emb|CBE05267.1| putative protein export chaperone [Clostridium difficile R20291]
Length = 380
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 60/183 (32%), Gaps = 4/183 (2%)
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
K+ + + K +Y + R + D K +
Sbjct: 192 KDDMKKELVASKYLNEKSKVTDKEAENYYNKNKSNYLQVRASHILIKTVDDKGKQVSSSK 251
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
E+ +A +++ + ++ G++F + K + + F+
Sbjct: 252 KAELKKEAEEIL-KKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVESFEKAAFAL 310
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
V +E+ Y + K T+ K P +E S L + + + +I LK +Y+
Sbjct: 311 KKGEVSNKLVESDYGYHIIKKTDEKYQPFEE---VKSDLVSSLTSEKQNLLIQNLKEKYN 367
Query: 616 VTV 618
V +
Sbjct: 368 VKI 370
Score = 42.9 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 16/172 (9%), Positives = 46/172 (26%), Gaps = 22/172 (12%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSV-------------SGSSTVVSVGRQKVPFS 54
K + ++ V + G +F + S V ++G +K+
Sbjct: 44 KLNNKTLKAIVAIVAVGAICLG-GGYVFGKEAGRKLPATSKHYNSSEVVATIGDKKITGE 102
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ + + +++ +++ L + + +
Sbjct: 103 MLRKRMEPLF-----YLNAKTTMTDDEIRSYESNMIETMITSDILSSEAAKEKISITNDQ 157
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+ + + + F L + + EK D K L + +
Sbjct: 158 LDAQYNNLMSSIESAMGMTKEEF---LKQFDLTEKYIKDDMKKELVASKYLN 206
>gi|84393693|ref|ZP_00992443.1| parvulin-like peptidyl-prolyl isomerase [Vibrio splendidus 12B01]
gi|84375692|gb|EAP92589.1| parvulin-like peptidyl-prolyl isomerase [Vibrio splendidus 12B01]
Length = 431
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 9/140 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ + V S V V + S S K + G + S+
Sbjct: 8 LIAIAAACTVSVSYAAPVELDSVKVIVNEGVILQSDIDASMKTLRANAKK-SGQTLPSQD 66
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L++++L+ L+ Q E IG+ D R+ I + + + +
Sbjct: 67 V----LNEQVLEKLIIDTIQTQEAERIGVRIDDARLDQAIEGIAKDNNQTV----EQLTA 118
Query: 140 RLAREGINEKEYIDHYTKML 159
+A EG++ + + K +
Sbjct: 119 SVAEEGLSYNAFREQVRKEI 138
>gi|120599971|ref|YP_964545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
W3-18-1]
gi|146292095|ref|YP_001182519.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
putrefaciens CN-32]
gi|120560064|gb|ABM25991.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sp.
W3-18-1]
gi|145563785|gb|ABP74720.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
putrefaciens CN-32]
gi|319425391|gb|ADV53465.1| outer membrane protein maturation factor, peptidyl-prolyl cis-trans
isomerase, SurA [Shewanella putrefaciens 200]
Length = 434
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 50/152 (32%), Gaps = 10/152 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
++F F + L + V + V S ++ + S+
Sbjct: 7 LIFALFALAISQPTLAAPQPLDRVAVQINDGIVLESEIVSMIGTVKANAKA-ANQSLPSD 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
A L ++++ L+ Q + IGL ++ I K S
Sbjct: 66 SA----LRTQVIERLILTRLQLQMADRIGLHIGDLQLDQAIENIAREQ----KMSVAQMQ 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ EG++ +Y + + ++ ++ + V
Sbjct: 118 QKIESEGLSFSQYREQLREEITLGEIQRIQVQ 149
>gi|294671290|ref|ZP_06736142.1| hypothetical protein NEIELOOT_02999 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307017|gb|EFE48260.1| hypothetical protein NEIELOOT_02999 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 320
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 10/113 (8%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI L F + + +V G G + F + Q + + +
Sbjct: 5 KILTAALLACFFQTASAADIKTVDG--VAAVAGDSVITMRQFEQAVAQARRLPAAQRPP- 61
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
L +++L L++ + + Q + GL A V +A +
Sbjct: 62 -------ENELRQQVLAQLINQSLIVQAGKRRGLAATQAEVDEAVAHAAAEQK 107
>gi|227114234|ref|ZP_03827890.1| peptidyl-prolyl cis-trans isomerase SurA [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 431
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/396 (10%), Positives = 108/396 (27%), Gaps = 55/396 (13%)
Query: 48 RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
V S + + +Q+ G + + L +I D L+ + Q + +G
Sbjct: 34 NSVVLESDVNSLLQSVKLN-AQQAGQQLPDD----ATLRHQITDRLIMDNIILQMAQKMG 88
Query: 108 LEADHGRVWGEIARSPLFHGK-----DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
++ ++ I + ++ +++ R I ++ I R
Sbjct: 89 IQVTDEQLNQAITNIAAQNRMSLDQLKSQLAYEGLNYNTYRNQIRKEMLISEVRNNEVRR 148
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
+ + + + Q N S I L+ D + + T ++ +
Sbjct: 149 RITVLPQEVDTLAKQIATQTGENDELNLSHILIPLSENPTQQQVDEAENLATSLVKQINE 208
Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE-------------- 268
+ + + E+ + + + +
Sbjct: 209 GADFGKLAITYSADSQALKGGQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHIL 268
Query: 269 ---------------IRTVEQLVFPNQKEADEAFQSLKKGKKFIQ--------------L 299
++ ++ K + Q L
Sbjct: 269 KVNDIRGGNKSVSVTETHARHILIKPSVVMTDSQAQAKLAEVAQQIKNGSTDFASQAKLL 328
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+++ G + LG S + D + D++ KKG+ + +H SFG+ + + + +
Sbjct: 329 SQDPGSANQGGDLGWASP-DMYDPAFRDALL-KLKKGEISQPVHSSFGWHLIQLLDTRQV 386
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
+ ++ A E ++
Sbjct: 387 DKTDAAQKEQAYRMIFNRKFAEEAQTWMQEQRAAAY 422
Score = 41.0 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 16/204 (7%), Positives = 53/204 (25%), Gaps = 7/204 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G+ + LF + + +++ + E
Sbjct: 229 GQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIRGGNKSVSVTETHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V T + +K ++ + +F K L + NQ +
Sbjct: 289 HILIKPSVVMTDSQAQAKLAEVAQQIKNGSTDFASQAKLLSQDPGSANQGGDLGWASPDM 348
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + + P+ + + + ++ + +K++ +
Sbjct: 349 YDPAFRDALLKLKKGEISQ-PVHSSFGWHLIQLLDTRQVDKTDAAQKEQAYRMIFNRKFA 407
Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + + ++ V V +
Sbjct: 408 EEAQTWMQEQRAAAYVKVINGATN 431
>gi|313669248|ref|YP_004049532.1| peptidyl-prolyl cis-trans isomerase [Neisseria lactamica ST-640]
gi|313006710|emb|CBN88180.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria lactamica
020-06]
Length = 359
Score = 55.6 bits (131), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/174 (7%), Positives = 44/174 (25%), Gaps = 8/174 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 82 SDGIAAVADNEVITRRRLAQAVADAKANLPKGV-------QISDTALTEQVLMQLVNQSL 134
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P ++ + +A + + +
Sbjct: 135 IVQAGKRRNIQATEAEIDAVVAQNPALKNLSPAQRRELADNIIAEKVREQAVMQNSRVSE 194
Query: 159 LSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ G+ + R D I +
Sbjct: 195 AEVDRFIEQAQKQGITLPEGEPLRQYRAQHILIKADGENAAVGAESTIRKIYDQ 248
>gi|78066682|ref|YP_369451.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
383]
gi|77967427|gb|ABB08807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
383]
Length = 260
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 143 EQQAKDLIAKI-KAGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + D+ + + Q + + L + L+ Q +
Sbjct: 202 QMTDTPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + ++ E++A Y+ + + ++ N+++A + +K G KF
Sbjct: 101 MIESFLKKNQPTDAEVKARYDDLVKGAGGNREYHLHHILVDNEQQAKDLIAKIKAGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I V
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRVD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+I+ F +VK IA Q+ K + ++
Sbjct: 221 DIRDIAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQ 256
>gi|320105835|ref|YP_004181425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
saanensis SP1PR4]
gi|319924356|gb|ADV81431.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Terriglobus
saanensis SP1PR4]
Length = 645
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/155 (8%), Positives = 43/155 (27%), Gaps = 9/155 (5%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
Q + S +Q + Q + + L L+ L +++
Sbjct: 87 NDQIISRSDVERQEQQLQAELRQGGAQAGDPAERQKNMLRD-----LIDQQLLLSRGKEL 141
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
G+ + + +++ S + +G++ +++ + + VV
Sbjct: 142 GIT-GDTELIRRLDDI---RKQNHLDSMEDLEKAARAQGVSFEDFKAQIRNSIITSSVVR 197
Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
V ++ +++ +
Sbjct: 198 DEVSRHLQMTQADERKYYDAHKDQFAQQEQVRLSE 232
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 20/232 (8%), Positives = 57/232 (24%), Gaps = 22/232 (9%)
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
D L+ K + ++ E+ + ++ S + ++ +
Sbjct: 146 DTELIRRLDDIRKQNHLDSMEDLEKAARAQGVSFEDFKAQIRNSIITSSVVRDEVSRHLQ 205
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKA-----------------NQLVLEYSKEGKN 516
+ K + + + + G
Sbjct: 206 MTQADERKYYDAHKDQFAQQEQVRLSEILIPLPADATDAAIAQAQAKAEETAAKIRAGAA 265
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
F D+ K + + + F V PI +V+ +
Sbjct: 266 FADVAKTTSGGPTAAQGGDLGFFKRGGLAPVLEEKTFPLKVGDF-TAPIRTRQGFVILQA 324
Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHDNLIQ 624
T + V + + + M +D + + + +L+ + + +
Sbjct: 325 TEHQEAGVPPLAQVDQQVQEAMYQDQMQPALRAYLTHLREDAYIDIKPGFVD 376
>gi|82703233|ref|YP_412799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
multiformis ATCC 25196]
gi|82411298|gb|ABB75407.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosospira
multiformis ATCC 25196]
Length = 265
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 52/147 (35%), Gaps = 3/147 (2%)
Query: 473 PARDRKLEEVLTDV-KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
++ E V T + K++K +A ++ + K+G F + +
Sbjct: 120 EELHKEYETVKTQMGDKEYKAHHILVATEEEAKDIIAKL-KKGAKFDKLAGEKSLDTGSK 178
Query: 532 NQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
++ +D + + + + P++ + V ++ + + + ++
Sbjct: 179 SKGGELDWSPAASYVQPFAEALTKLHKGQLTDQPVKTPFGWHVIRLDDVRPLKIPPFEEI 238
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
L Q + + + I L+S+ V
Sbjct: 239 KQNLAQRVLQRQFAASINDLRSKAKVE 265
Score = 41.8 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 12/97 (12%)
Query: 22 FVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
I G ++ ST+ V +P S + G E
Sbjct: 9 LAALGISGLIAATTVQAQTGSTMAKVNGTPIPQSRLE-----FIMKARASQGQPDTPEA- 62
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
K + ++L++ + Q + GL+ D +
Sbjct: 63 -----RKALREDLITEEVIAQEAKKKGLDRDPDFITQ 94
>gi|118588533|ref|ZP_01545942.1| hypothetical protein SIAM614_24667 [Stappia aggregata IAM 12614]
gi|118439239|gb|EAV45871.1| hypothetical protein SIAM614_24667 [Stappia aggregata IAM 12614]
Length = 296
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/152 (12%), Positives = 52/152 (34%), Gaps = 1/152 (0%)
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + E + ++ + ++A ++ E G +F ++ +
Sbjct: 116 EVTDEEVQAAYDKEFADFEGAEEINARHILVKDKAEAEAIIAELD-GGADFAELAREKST 174
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
N + + F+ P+E + V K+ + +
Sbjct: 175 GPSGPNGGSLGYFAKGQMVPPFEAAAFALEPGTYTKEPVETQFGWHVIKLEDKRRQEKPA 234
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
++ + L Q + ++ D+ +A LK Q +V +
Sbjct: 235 FEEVANGLRQQLMRERYDARMAELKDQVAVEI 266
Score = 39.8 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 10/78 (12%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S L + V VG ++ + + + + + + K +L
Sbjct: 19 STVLSAAEPDDVVAKVGDTEITEADLAFAAQDLGKELQR-----FPPAQ-----WRKLLL 68
Query: 91 DNLVSGATLDQFIEDIGL 108
D +V + + GL
Sbjct: 69 DVMVDMELMAHAAREEGL 86
>gi|312112916|ref|YP_004010512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
vannielii ATCC 17100]
gi|311218045|gb|ADP69413.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodomicrobium
vannielii ATCC 17100]
Length = 283
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 55/161 (34%), Gaps = 2/161 (1%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
I ++ + + + + + +A LV + K G +F ++ K
Sbjct: 110 ITDAQAKAAYDEQIAKLKPEPEVRARHILVKTKEEAADLVKQL-KGGADFNELAKKSADG 168
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ F+ + P+++ + V KV + + PV
Sbjct: 169 PSANTGGDLGYFSKGQMVKVFEDTAFALQPGQI-SDPVQSEFGWHVIKVEDKRNRPVPSF 227
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
D+ + + ++ L + L+S V + D +++ ++
Sbjct: 228 DEVKDQIVASLVQNQLRETVQKLRSSAKVEIVDPELKKAIE 268
>gi|148258757|ref|YP_001243342.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
gi|146410930|gb|ABQ39436.1| putative Peptidylprolyl isomerase [Bradyrhizobium sp. BTAi1]
Length = 274
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 50/147 (34%), Gaps = 4/147 (2%)
Query: 473 PARDRKLEEVLTDV--KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
A + EE + +++ E +A + E +K G +F ++ K
Sbjct: 107 DAMKKVYEEASKQIGGEQEVHARHILVETEDEAKAVKAELAKGG-DFAELAKKKSKDPGA 165
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
++ + + + + F+ + P++ + + KV + E D+
Sbjct: 166 SDGGDLGFFTKEQMVPEFANVAFALEPGKI-SDPVKTQFGWHIIKVEEKRNRKPPEFDQV 224
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
S + + + ++ L+ +
Sbjct: 225 KSQIETYVTRKAQADYVSKLREAAKIE 251
>gi|289548355|ref|YP_003473343.1| hypothetical protein Thal_0582 [Thermocrinis albus DSM 14484]
gi|289181972|gb|ADC89216.1| hypothetical protein Thal_0582 [Thermocrinis albus DSM 14484]
Length = 275
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 33/110 (30%), Gaps = 20/110 (18%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ FLV + + + V + + + F+ ++ I
Sbjct: 3 ILYFFLVFILLA--------------QAQPVARINGEPIQREDFLRAFNAYWREIIHLPI 48
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+ + + LV G +++ + +GL + I ++
Sbjct: 49 AQASRKDMEEFLI------ELVRGKIVEREAKKMGLSVTSKELDEYIEKN 92
>gi|163850906|ref|YP_001638949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
extorquens PA1]
gi|163662511|gb|ABY29878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
extorquens PA1]
Length = 300
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/224 (13%), Positives = 65/224 (29%), Gaps = 10/224 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+++ + ++ LP VD K + D +A
Sbjct: 62 DLAIAAEDPALSLPGVDEGAKQNLLVDYMVDLKVGAQAAESAEVGDAPEFKRKLAYFRDK 121
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEG 514
+ E + E ++ K++K EEV ++ + + K G
Sbjct: 122 LLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAARVKGG 181
Query: 515 KNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
++F I + + + + + F V P++ + V
Sbjct: 182 EDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVKPFADAAFKMTPGQV-SDPVKTQFGWHV 240
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+V + PV D+ + Q + + I L+ V
Sbjct: 241 LRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284
>gi|251794480|ref|YP_003009211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
JDR-2]
gi|247542106|gb|ACS99124.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
JDR-2]
Length = 392
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 49/157 (31%), Gaps = 7/157 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++ + + + + +A ++ + K G +F + K
Sbjct: 203 VKVTDDDIKAYYDANKASMSTPEQIRASHILVATKEEAEDILKQL-KAGADFATLAKEKS 261
Query: 526 ASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SK 580
T + ++ K F+ + ++ Y + K T+
Sbjct: 262 TDTGTKDNGGDLNFFGKGSMEPAFEDAAFALKKGEL-SGVVQTSYGYHIIKKTDEKAAVT 320
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++K+ L +L + +A LK++ +T
Sbjct: 321 PTLEEKKEDIKYQLVTQKVSELSSTWMADLKAKAKIT 357
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/186 (12%), Positives = 54/186 (29%), Gaps = 25/186 (13%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
R + W+A ++ + + ++ +G V +V K+
Sbjct: 70 RSGGKAWIAVSAILAIVLIIVLIKPP----FGAGDKAVATVNGAKITKDKL-------YD 118
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ ++ G K LDN+++ +DQ D + V EI
Sbjct: 119 SLVEQGG--------------KSTLDNMITTELIDQAAADAKVTVTEADVDKEIENLKKS 164
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
G +++F+ + + + + E + + + V +
Sbjct: 165 FGSEDEFNQTLAQYGMTVDSLREDAEVQVKIRKILEPQVKVTDDDIKAYYDANKASMSTP 224
Query: 186 YFENRS 191
S
Sbjct: 225 EQIRAS 230
>gi|159897379|ref|YP_001543626.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Herpetosiphon
aurantiacus ATCC 23779]
gi|159890418|gb|ABX03498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Herpetosiphon
aurantiacus ATCC 23779]
Length = 315
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/148 (10%), Positives = 48/148 (32%), Gaps = 20/148 (13%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R+ ++ + L ++ ++ G + + S S +V VG + + F
Sbjct: 1 MRRHAQ----WLLLCLVIA--ILAGCGSEITT-SQSKVLVEVGNSSITEAEFTTFLDLNS 53
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL---EADHGR----VWG 117
+I+Q + +++LD ++ + + +G + +
Sbjct: 54 NIINQNASG------LDANTTRQQLLDQMILQKVILEESAKLGAGIDSVSAEQTTMMIDQ 107
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREG 145
+ + + F+ + +
Sbjct: 108 AVGKEKPTYADYEAFAKENRFGTVESMR 135
>gi|310828352|ref|YP_003960709.1| foldase protein PrsA [Eubacterium limosum KIST612]
gi|308740086|gb|ADO37746.1| foldase protein PrsA [Eubacterium limosum KIST612]
Length = 253
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 45/157 (28%), Gaps = 4/157 (2%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++ + + + +A ++ E GK F + K
Sbjct: 92 VEVSDEEVKKFYDENPKQFIAPDSIRASHILLPSEQQAIDIIKEIKDGGKTFEEAAKAYS 151
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-- 583
+ + F+ V + P++ + + KVT+SK
Sbjct: 152 VCPSREQGGDLSYFSKGKMVPQFENAAFAMKVGEMSDEPVKTDFGWHIIKVTDSKTSETI 211
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K+ YL + + LK +Y V V
Sbjct: 212 PYDVVKESARQYLLEQKQNRAFLDRVDELKKEYDVDV 248
>gi|323493622|ref|ZP_08098743.1| survival protein SurA [Vibrio brasiliensis LMG 20546]
gi|323312145|gb|EGA65288.1| survival protein SurA [Vibrio brasiliensis LMG 20546]
Length = 432
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 9/173 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V V V S S K + G + SE+ L +++ + L+
Sbjct: 28 DNIAVIVNSGVVLQSDIDTSLKTLKANAKK-SGQSLPSEQV----LREQVTEKLIVDTIQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IG+ D R+ I ++N+ + + + +A+EG++ E+ + K +
Sbjct: 83 QQEAQRIGVRIDDNRLNEAIEEI----ARNNQQTVEQLSASIAQEGLSYAEFREQVRKEI 138
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ ++ V + + H+ + +
Sbjct: 139 AASEARNALVRRRINILPAEVDNLANILAKETNATVQYKIGHIQLRVNDGDDK 191
>gi|83945293|ref|ZP_00957642.1| peptidyl-prolyl cis-trans isomerase family protein [Oceanicaulis
alexandrii HTCC2633]
gi|83851463|gb|EAP89319.1| peptidyl-prolyl cis-trans isomerase family protein [Oceanicaulis
alexandrii HTCC2633]
Length = 411
Score = 55.6 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/153 (10%), Positives = 35/153 (22%), Gaps = 10/153 (6%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + + + V Q + + + + +
Sbjct: 9 ILAGIALMSAAPTASAQQVEGIAAVVNDQPITTLDVRDRMRLIISSAGVQ------PTEE 62
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ + + LV Q + LE + V IA G +
Sbjct: 63 MLARIQDQSIRGLVDETLQLQQAAEFDLEVEEAEVDDAIADIATRSGATVQ----EVEDD 118
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
LA GI+ ++ +V
Sbjct: 119 LAASGIDINTLRQQVKAEIAWQILVSGRYRSRI 151
>gi|291279541|ref|YP_003496376.1| hypothetical protein DEFDS_1151 [Deferribacter desulfuricans SSM1]
gi|290754243|dbj|BAI80620.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 314
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/185 (12%), Positives = 50/185 (27%), Gaps = 16/185 (8%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
R+ + L + V F V + + S + L +
Sbjct: 2 KRSIILGFLLAIFIVSFAFA----------EEKVAAKVNGKAIYESEVNTVIAELLLK-N 50
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
V+ + V + KKIL+ L+ L Q + + V ++
Sbjct: 51 GIAPSSVDFNNPQLVEIKKKILEQLIDREVLAQHSKTFTYKGIENDVNKKLDELKSGFKT 110
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
D + + L + + E E + K + + + + S +
Sbjct: 111 DKE-----YKDALQKNNLTETELKEKIKKNILVKKQLDSYKSKITVSEQEKKDFYNKNKD 165
Query: 189 NRSVD 193
+
Sbjct: 166 KFVIK 170
>gi|114797858|ref|YP_760847.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Hyphomonas neptunium ATCC 15444]
gi|114738032|gb|ABI76157.1| PPIC-type PPIASE domain protein [Hyphomonas neptunium ATCC 15444]
Length = 415
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/158 (9%), Positives = 40/158 (25%), Gaps = 9/158 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + +S + L I + + + + L+ L+
Sbjct: 35 EGIAAIVNDKPISYSDVRQRARLLLLTIGASQ-----PTQEQVQQITGQALEQLIDEKLQ 89
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ + +E D + + G +V +L G+N + +
Sbjct: 90 LDRVSEFEVEVDPVEIDAAVQNMASEAGVTG----EVLREQLTSSGVNPASLEEQMRAEI 145
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ ++ G + + S
Sbjct: 146 AWNRLMSGLYGNRIRISENQVDDQMSRLRTASQKTQYR 183
>gi|331006695|ref|ZP_08329972.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase SurA) [gamma proteobacterium IMCC1989]
gi|330419503|gb|EGG93892.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase SurA) [gamma proteobacterium IMCC1989]
Length = 432
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/214 (8%), Positives = 49/214 (22%), Gaps = 7/214 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + Q + + L ++LD L+
Sbjct: 37 DGIIAIVKDDIIFAQELEQKIHQAKIRLQARNQKT------DEKRLQSQLLDALILEKLQ 90
Query: 100 DQFIEDIGLEADHGRVWGEIARSPL-FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ L A + IA++ F + L++ ++ +
Sbjct: 91 LSLAKQNNLVATDAEIDNSIAQTKAQLQSNGASFDDYLAAQNLSQTQARKEIEKEVLISK 150
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + + + L+ + + + + + + + +
Sbjct: 151 VQQAVISQRINITDTEVDNYLESKEGQEWLTPRLHLGQIFLPYTAKNKQQTMQKAQKIYR 210
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ EK I I E
Sbjct: 211 DVSKRTNEFGVFAQRFSQGPNAEKGGDIGIQRKE 244
Score = 41.0 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 23/240 (9%), Positives = 62/240 (25%), Gaps = 6/240 (2%)
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI--PYKEQLLF 441
+ + ++S+R + KG ++ L
Sbjct: 192 PYTAKNKQQTMQKAQKIYRDVSKRTNEFGVFAQRFSQGPNAEKGGDIGIQRKEDLPPLFV 251
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
K G ++ + + + + T EE
Sbjct: 252 ERVDKLAVGEITQPFFSDAGVHILALFDRQGAEPVIVTQYKVRHILVKPTDLFTEEEAQK 311
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
K N+L + + G +F I + + + + + +
Sbjct: 312 KINELREKIIQ-GASFATIAQEYSDDIGSKLDGGDVGWSSPGVFVPAFEKAMQTTAINTI 370
Query: 562 CFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P ++ + + V + + + + + + + Q +D L + L+ V +
Sbjct: 371 SQPFKSTFGWHILTVEGQRSKDIFDTVKRSQVRNIIGQQRFQDELTIWLKELRESSYVEI 430
>gi|51598371|ref|YP_072559.1| basic membrane protein [Borrelia garinii PBi]
gi|51572942|gb|AAU06967.1| basic membrane protein [Borrelia garinii PBi]
Length = 336
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/203 (9%), Positives = 60/203 (29%), Gaps = 28/203 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGM 66
++++ + L ++ + S + ++ V + + + + F + +
Sbjct: 2 KSFLFLVILGIMGI-----------NSFAQNTPVAIINLYKNEIITKTGFDSKV----DI 46
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+ G + + K++L L++ Q G++ V I
Sbjct: 47 FKKTQGRDLTAAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT----Q 96
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ + + ++G N E + + LS +V + +
Sbjct: 97 FGLVNLTDEQIKQMIEKQGTNWGELLASMKRSLSSQKLVLKQSQPRFSEVKTPSEKEIVE 156
Query: 187 FENRSVDYIVLNNRHVPAIADPS 209
+ + V + + S
Sbjct: 157 YYEANKTKFVNPDISRVSHVFFS 179
>gi|320102636|ref|YP_004178227.1| hypothetical protein Isop_1090 [Isosphaera pallida ATCC 43644]
gi|319749918|gb|ADV61678.1| hypothetical protein Isop_1090 [Isosphaera pallida ATCC 43644]
Length = 708
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 66/688 (9%), Positives = 167/688 (24%), Gaps = 78/688 (11%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSD---ALFSV--SGSSTVVSVGRQKVPFSS 55
ML+ +R+ + KI ++ V ++ L D LF + + + +KV +
Sbjct: 1 MLDAVRRNQK----KILAIMAIVAMFLFTLGDALPYLFGPTMTQNREEAVLYGRKVMTAD 56
Query: 56 FINSWKQELGM-------ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ------- 101
+ I K G +N + + + D ++ D+
Sbjct: 57 LSKIAQTRALANEFIDLVIRAKYGVSLNPQPFGGTSTRELV-DAMILQKVADEAGIPSTP 115
Query: 102 -----FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
++ +G++ + + ++ S + + ++ ++ + +
Sbjct: 116 ELGEDYLRALGIDISDAKDNALLVNVKSSRYGNSVTSDQLLSAIASQYRLSLAQSLGVVA 175
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
+ G R + + + Y + + + + +
Sbjct: 176 PVTPLDVYDGYRDRNERIAGVAREFKVEDYLDQVTAQPSEADLQALFNKYKNQLPDANPA 235
Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
+K + ++ + EL+ ++ K + R + V
Sbjct: 236 EPGFKIPRKVRFAIASIDSQALAQTIRTRLVADDHELREMFQIRKPQIQLDRARAIRNAV 295
Query: 277 -------------FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYI 320
Q + L L E+ ++L + +
Sbjct: 296 AAARWTDLDALPTDLFQGDPTATLTPLTLAMVQNTLVEDLTTERVALTLDERFGVLQTRV 355
Query: 321 PDVSL----ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
D + + +G ++ +
Sbjct: 356 VDPFINLYDQAVDRATRSRGRSAEGQEEDPPLDELLEFGLRQGVEQLLSGLGVTPPPIKD 415
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
+ + + + + + ++ P+ +
Sbjct: 416 GSGVIAAFNAALQAVVQKIEEMQFQVSPAVSRATLAELGPIASSVSGTTYPDPRSGSVPD 475
Query: 437 EQLLFRVFGKDDPLSKDHTVALPD--GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
LF + + D G PAR EV V W+ +
Sbjct: 476 TSQLFAQMAFEQNTRLFEKLETVDAEGRVYNAWRIADEPARVPSFNEVREQVIAAWRFAE 535
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNL---------------GASLLTTNQINRMDN 539
+ + A + E + + R S + R ++
Sbjct: 536 ARKLAQAAAEAFLAEVRAKNGDLRAAAGENPVITIAPVTKFVELPNLSPFSAQTTYRAND 595
Query: 540 ENKFF--GYDGISQVFSGP-VEMVKCFPIENGLSYVVFKVTNSKVGPVQ---------EK 587
+F G F P + V N P E+
Sbjct: 596 IFEFVNAGDQLRDAYFKLERPGDAFVAPNAPIDRFYVVAYENRLKAPFNDFVGINNQRER 655
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ S L + ++ L + +A L+
Sbjct: 656 ESIQSELLRQTLQEALKARMAELRRNAG 683
>gi|126699880|ref|YP_001088777.1| putative protein export chaperone [Clostridium difficile 630]
gi|255101406|ref|ZP_05330383.1| putative protein export chaperone [Clostridium difficile QCD-63q42]
gi|115251317|emb|CAJ69148.1| Peptidyl-prolyl cis-trans isomerase, PpiC-type [Clostridium
difficile]
Length = 380
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/183 (14%), Positives = 60/183 (32%), Gaps = 4/183 (2%)
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
K+ + + K +Y + R + D K +
Sbjct: 192 KDDMKKELVASKYLNEKSKVTDKEAENYYNKNKSNYLQVRASHILIKTVDDKGKQVSSSK 251
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
E+ +A +++ + ++ G++F + K + + F+
Sbjct: 252 KAELKKEAEEIL-KKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVESFEKAAFAL 310
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
V +E+ Y + K T+ K P +E S L + + + +I LK +Y+
Sbjct: 311 KKGEVSNKLVESDYGYHIIKKTDEKYQPFEE---VKSDLVSSLTSEKQNLLIQNLKEKYN 367
Query: 616 VTV 618
V +
Sbjct: 368 VKI 370
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 16/172 (9%), Positives = 46/172 (26%), Gaps = 22/172 (12%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSV-------------SGSSTVVSVGRQKVPFS 54
K + ++ V + G +F + S V ++G +K+
Sbjct: 44 KLNNKTLKAIVAIVAVGAICLG-GGYIFGKEAGRKLPATSKHYNSSEVVATIGDKKITGE 102
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ + + +++ +++ L + + +
Sbjct: 103 MLRKRMEPLF-----YLNAKTTMTDDEIRSYESNMIETMITSDILSSEAAKEKISITNDQ 157
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+ + + + F L + + EK D K L + +
Sbjct: 158 LDAQYNNLMSSIESAMGMTKEEF---LKQFDLTEKYIKDDMKKELVASKYLN 206
>gi|253689994|ref|YP_003019184.1| Peptidylprolyl isomerase [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756572|gb|ACT14648.1| Peptidylprolyl isomerase [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 431
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 62/170 (36%), Gaps = 11/170 (6%)
Query: 48 RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
V S + + +Q+ G + + L +I D L+ + Q + +G
Sbjct: 34 NSVVLESDVNSLLQSVKLN-AQQAGQQLPDD----ATLRHQITDRLIMDNIILQMAQKMG 88
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
++ ++ I N+ S D S+LA EG+N Y K + ++V
Sbjct: 89 IQVTDEQLEQAITNIAA----QNRMSLDQLKSQLAYEGLNYNTYRSQIRKEMLISEVRNN 144
Query: 168 FVGGMRP--SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
V + AK+ + D + L++ +P +P+ + +
Sbjct: 145 EVRRRVTVLPQEVDTLAKQIANQTGENDELNLSHILIPLPENPTQQQVDE 194
Score = 41.0 bits (93), Expect = 0.66, Method: Composition-based stats.
Identities = 17/204 (8%), Positives = 52/204 (25%), Gaps = 7/204 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLT 484
G+ + LF + + +++ + E
Sbjct: 229 GQMGWGKLQEIPTLFAERLTQAQKGQVVGPIRSGVGFHILKVNDIRGGNKSVSVTETHAR 288
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V T + +K + + +F K L + NQ +
Sbjct: 289 HILIKPSVVMTDSQAQAKLADVAQQIKNGSTDFAAQAKLLSQDPGSANQGGDLGWASPDM 348
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + + PI + + + ++ + +K++ +
Sbjct: 349 YDPAFRDALLKLKKGEISQ-PIHSSFGWHLIQLLDTRQVDKTDAAQKEQAYRMIFNRKFA 407
Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + + ++ V V +
Sbjct: 408 EEAQTWMQEQRASAYVKVINGATN 431
>gi|157804053|ref|YP_001492602.1| hypothetical protein A1E_04460 [Rickettsia canadensis str. McKiel]
gi|157785316|gb|ABV73817.1| hypothetical protein A1E_04460 [Rickettsia canadensis str. McKiel]
Length = 295
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/264 (13%), Positives = 81/264 (30%), Gaps = 16/264 (6%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K L+++ + F + S + V SV + + + F+ K + +
Sbjct: 1 MKKLLLIIGIVFTF-----NVAQASRPNIVASVNDEPITLNEFLARKKMIIA-----LNN 50
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
V + A+ L + +L+ + L Q+ D E + I NK
Sbjct: 51 VESLTPAQDKQLSDLAIKSLIDESLLFQYAGDR--EITQEEIDNAIKSIE----DRNKMP 104
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
H + L +N +I L + +++ ++ SN +D A +
Sbjct: 105 HGSLLQYLKSRSVNPGSFIAQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEI 164
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + K + + Y + + ++ K ++ +
Sbjct: 165 SMQVFTSKHSGNTAFTQMNNLKNRLKKCTDVKQSLYDNFATMQIITNKLSKIEDVQQTII 224
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVF 277
+ F + LV
Sbjct: 225 KDLTPNKASNVFEVNNKFEIILVC 248
>gi|168704077|ref|ZP_02736354.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gemmata
obscuriglobus UQM 2246]
Length = 309
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 37/112 (33%), Gaps = 15/112 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
R +A ++ F + + + +V +++ + K L
Sbjct: 2 RHPLALSLTLLAGSTFALA-----QPPAANPNLAATVNGEQITLAEVDALLKTTL----- 51
Query: 70 KIGFVVNS-ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ A+ + ++L ++V L QF+ G + D + ++
Sbjct: 52 ----PLTPLTAAQKRQMRVEVLADMVDDVLLRQFLRKNGPKVDPAEIDAQLK 99
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 47/173 (27%), Gaps = 5/173 (2%)
Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
K + +Y + VL K + K +
Sbjct: 137 TGYVKSNATEEQLKAYFAANKDHFDRVEVKVRHVVLRAGKSASPAERA--AAKEKLEAIR 194
Query: 508 LEYSKEGKNFRDIGKNLG--ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+ + +F D K S I + + F+ + +
Sbjct: 195 ADIAGGKLDFADAAKKHSHCPSGPAGGDIGVIYRKGGIVDEAFAKAAFALKPGEL-SGVV 253
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
E Y + +VT K G DK + + + + +IA L+ Q + +
Sbjct: 254 ETDFGYHLIQVTERKPGTPTTYDKSATDVLDTYSDEFRADLIAKLRKQGQIQI 306
>gi|33602778|ref|NP_890338.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
bronchiseptica RB50]
gi|81713941|sp|Q7WCX5|PLP1_BORBR RecName: Full=Probable parvulin-type peptidyl-prolyl cis-trans
isomerase; Short=PPIase; AltName: Full=Rotamase; Flags:
Precursor
gi|33577220|emb|CAE35777.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
bronchiseptica RB50]
Length = 258
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 1/151 (0%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ ++ + + + K ++K E AN L+ + F D+ K
Sbjct: 108 VTDAQVKAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQVKSNKSKFDDLAKKNSKD 167
Query: 528 LLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
+ + + + V + P++ + V +V +++
Sbjct: 168 PGSAERGGDLGWAPATNYVQPFAEAVTKLKKGQLVDKPVQTQFGWHVIQVDDTRPVEFPA 227
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
D+ L +M+ + L + L+ Q +
Sbjct: 228 MDQVRPQLEEMLRQQTLANYQKQLREQAKIQ 258
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V +V + + S K + S L ++I +++
Sbjct: 20 QNVATVNGKPITQKSLDEFVKLVVSQ-----------GATDSPQLREQIKQEMINRQVFV 68
Query: 101 QFIEDIGL 108
Q E G+
Sbjct: 69 QAAEKDGV 76
>gi|157374105|ref|YP_001472705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
HAW-EB3]
gi|157316479|gb|ABV35577.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella sediminis
HAW-EB3]
Length = 434
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/193 (12%), Positives = 61/193 (31%), Gaps = 11/193 (5%)
Query: 21 LFVPFLIWGLSDALFS--VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
FL +S + + V + V S + S + S+
Sbjct: 7 FIFAFLTLAMSHTVLAKVEPLDRVAVQINEGIVLESEIAGMLQTVKANASS-AEQALPSD 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
+A L ++++ L+ Q + IGL ++ I+ + D
Sbjct: 66 QA----LRTQVIERLIMTRLQMQMADRIGLHIGDLQLDQTISNIAKEQN----LTVDQMR 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
+++ EG++ +Y + + ++ ++ + V + E + + +
Sbjct: 118 AKIGEEGMSWSQYREQLREEITLGEIQRIQVQRRIQVSPQEINNLVKLIEEQGLQQVEFQ 177
Query: 199 NRHVPAIADPSNA 211
H+ S +
Sbjct: 178 IGHILIEVPSSPS 190
Score = 42.2 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 15/201 (7%), Positives = 55/201 (27%), Gaps = 3/201 (1%)
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
+ + L V + G ++ + E +
Sbjct: 233 WDYMNVNEMPTLFAEVLSGAKTGDVIGPIRSGAGFHIIKVLDARGLQTKEVDEVSSRHIL 292
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + E + ++ V + +F + + + + + +
Sbjct: 293 IKPSPILSEERAKAMLDKFVEQVRAGDADFAALARQYSEDPGSGAKGGELGWADPSVYVP 352
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLD 604
+Q + P + + + ++ + +K ++ + + + L
Sbjct: 353 AFAQTLNALEIGEISEPFRSSHGWHIVQLEERRKTDATDKFNTNRAHQLIFRRKFNEELQ 412
Query: 605 SVIAYLKSQYSVTVHDNLIQR 625
+ + ++S+ + V D R
Sbjct: 413 NWLDEMRSEAYIEVFDADFNR 433
>gi|86159490|ref|YP_466275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85776001|gb|ABC82838.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 587
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/580 (9%), Positives = 129/580 (22%), Gaps = 77/580 (13%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
+ + Q VP + + G + G + K +L ++ L
Sbjct: 73 PIARIDDQVVPLADLQEALASTHG--ERSAGAATAPDF-------KVVLQRIIDSRLLIM 123
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
++GL P + F L ++ + + + + +
Sbjct: 124 EAREMGL-----------DELPELKEQLAVFKDVTLRETLQQQVTKDVKPDALEVERVYK 172
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
V V + A + + AD S ++
Sbjct: 173 ESVRRWKVRSLLFQKEEDAAAVKPALAGGKSFVELAKQLVAEKKADGSGEPEVLPPDQIL 232
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
A + + + I E + ++ + Q +
Sbjct: 233 PAVAAALQPLHKGEVTAPLKLQNGFAILYVEDLVYPDDPAKRAEAEAASIDRQ----GGQ 288
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ L + I A + G + + + +
Sbjct: 289 ILIAFRKELDRKYVKIDEALLRKIDFDAPKPGF---AVLVKDKRPIARIAGEAPITVS-- 343
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE-DYKRLEEFLALGTS 400
++ + F + + R+ K + +
Sbjct: 344 -------------DLANAVGEKFFHGVEKPQQEKRVDKLKRPRLDGLIYKRVFTKEARVR 390
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ S D G V+ V + K+ L + +
Sbjct: 391 KLDQSEEYLRAVADQENSLVFGTFVQRVLVPDVSIKDADLRAYYDGHRDEFTAAPL---- 446
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
++ + + + AE ++ + L+ + EG+
Sbjct: 447 -----YRLDQLAFPDMKG-------------AQRAAERLARGTDFKWLKANAEGQLAPA- 487
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
K D + S V + G YVV V+ +
Sbjct: 488 --------QRALDFEGQLLSAKGLPEDLAGALASAQVGDYRMHQGPRGQGYVVLVVSRTD 539
Query: 581 V---GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L + A L++ + +
Sbjct: 540 PQVQPYEEARKDIQKKLFGQALNRAVTDWAAKLRAAHDIE 579
>gi|110346927|ref|YP_665745.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium sp.
BNC1]
gi|110283038|gb|ABG61098.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chelativorans sp.
BNC1]
Length = 290
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 50/156 (32%), Gaps = 4/156 (2%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL-VLEYSKEGKNFRDIGK 522
+ + + A +E + + + + S+++ + V+E K GK F ++ +
Sbjct: 120 VAAAVTD--EAVKAAYDERVGKIPPVLERRLRHILLRSESDAVEVIEALKGGKAFAELAQ 177
Query: 523 NLGA-SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
A + + + + P+ + + V V ++
Sbjct: 178 ERSADEVSKVKGGDLGFVAEGQVVPEVDAAAAKLQPGEFTQSPVASAFGFHVVLVEETRN 237
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P + + Q + +I+ L++ V
Sbjct: 238 RPPPAFEAVAPQIRQALEATEERRIISELRAAAKVE 273
Score = 41.0 bits (93), Expect = 0.60, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 31/110 (28%), Gaps = 19/110 (17%)
Query: 1 MLEIIRKASR--TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
M+ + R + + + + ++ +S V V Q +
Sbjct: 1 MMGWTKNRYRESGILITTIVSLSLLL-------GSVAGAQDASVVGRVDGQDITADDLAI 53
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
+ + + Q E AR ++D L+ + + +
Sbjct: 54 AEQMYSQQLGQM------PEDAR----RSMLVDALIELRIVAEAARKANV 93
>gi|219684844|ref|ZP_03539786.1| basic membrane protein [Borrelia garinii PBr]
gi|219671789|gb|EED28844.1| basic membrane protein [Borrelia garinii PBr]
Length = 336
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/203 (9%), Positives = 60/203 (29%), Gaps = 28/203 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGM 66
++++ + L ++ + S + ++ V + + + + F + +
Sbjct: 2 KSFLFLVILGIMGI-----------NSFAQNTPVAIINLYKNEIITKTGFDSKV----DI 46
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+ G + + K++L L++ Q G++ V I
Sbjct: 47 FKKTQGRDLTAAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT----Q 96
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ + + ++G N E + + LS +V + +
Sbjct: 97 FGLVNLTDEQIKQMIEKQGTNWGELLASMKRSLSSQKLVLKQAQPRFSEVKTPSEKEIVE 156
Query: 187 FENRSVDYIVLNNRHVPAIADPS 209
+ + V + + S
Sbjct: 157 YYEANKTKFVNPDISRVSHVFFS 179
>gi|75674587|ref|YP_317008.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
winogradskyi Nb-255]
gi|74419457|gb|ABA03656.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrobacter
winogradskyi Nb-255]
Length = 301
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
G +F ++ K ++ + + D F+ + P++ + +
Sbjct: 175 GADFAELAKKESKDPGASDGGDLGFFTKEQMVPDFSKVAFALEPGKI-SDPVKTQFGWHI 233
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
KV + + D+ + Q + + +A L+ +
Sbjct: 234 IKVEEKRARKAPDFDQVKPQIEQFVTRKAQAEYVAKLRETAKIE 277
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 6/88 (6%), Positives = 26/88 (29%), Gaps = 10/88 (11%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
+ + + + + + V ++ S + ++ + +
Sbjct: 27 AVLLVGTPVHADDANPVLAKVNGSEIRQSDVNLAAEEL----------GPSLAQMDPAAK 76
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHG 113
+ +L L+ + + E+ +E
Sbjct: 77 QENVLSFLIDMKIIAKAAEEKKVENSED 104
>gi|332530714|ref|ZP_08406644.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
ATCC 19624]
gi|332039835|gb|EGI76231.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hylemonella gracilis
ATCC 19624]
Length = 266
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
++A L+ + K+G F + K + + +D + + + + + +
Sbjct: 149 EAEAQALLAQL-KKGAKFDALAKQHSKDPGSAARGGDLDWAPAQGYVPEFAAALQALGKG 207
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P++ + + +V + + + + L Q + + + L+++ +
Sbjct: 208 QTSEAPVQTQFGWHLLQVEDVRDIQLPSLNDVKPQLAQEIGQRKFEEFQKDLRAKAKIK 266
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 12/73 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V + +P + +Q L G E + +++ ++ L
Sbjct: 31 QNLAVVNGKPIPTARVDALARQVLR------GQPPTPE------IMEELKQAVIDRELLA 78
Query: 101 QFIEDIGLEADHG 113
Q GL A
Sbjct: 79 QEARRQGLAATPE 91
Score = 37.5 bits (84), Expect = 7.3, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 3/124 (2%)
Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVSLA 326
++ P + EA LKKG KF LA++ K + G ++ A
Sbjct: 139 YHARHILVPTEAEAQALLAQLKKGAKFDALAKQHSKDPGSAARGGDLDWAPAQGYVPEFA 198
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
++ +L K + FG+ + V +++ S +VK +A ++ K E K+
Sbjct: 199 AALQALGKGQTSEAPVQTQFGWHLLQVEDVRDIQLPSLNDVKPQLAQEIGQRKFEEFQKD 258
Query: 387 DYKR 390
+
Sbjct: 259 LRAK 262
>gi|149183221|ref|ZP_01861666.1| YacD [Bacillus sp. SG-1]
gi|148849054|gb|EDL63259.1| YacD [Bacillus sp. SG-1]
Length = 123
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 49/137 (35%), Gaps = 28/137 (20%)
Query: 1 MLEIIRKASRTWVAKIFLVVL------FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS 54
M +R R+ + + ++L + F L ++G+ T +VG + +
Sbjct: 1 MDTKVR-LKRSVLISLVFILLGANVVTLIYFTKAEAGPGLAELAGAETAATVGGETISRE 59
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
S++ + ++ G K++L L++ + Q E ++
Sbjct: 60 SWMFE-------MEKRYG--------------KEVLRELINQKVMIQLAEKYDIKVTDEE 98
Query: 115 VWGEIARSPLFHGKDNK 131
+ E+A + +K
Sbjct: 99 LDKEVALIKSVYSSYDK 115
>gi|323495831|ref|ZP_08100899.1| putative parvulin-like peptidyl-prolyl isomerase [Vibrio
sinaloensis DSM 21326]
gi|323319047|gb|EGA71990.1| putative parvulin-like peptidyl-prolyl isomerase [Vibrio
sinaloensis DSM 21326]
Length = 431
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/192 (14%), Positives = 60/192 (31%), Gaps = 15/192 (7%)
Query: 26 LIWGLSDALFSVSGSSTVV------SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
L+ L+ + F ++ + V V + S S K + G + +
Sbjct: 8 LLAVLAASQFGLASAQPVALDKINVIVNGGVILESDIDTSIKTLKANAKK-SGQGLPTAD 66
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L +++ + L+ Q E IG+ D R+ I K+N + +
Sbjct: 67 V----LRQQVTEKLIIDTLQQQEAERIGIRIDDNRLNEAIEEI----AKNNNQTIEQLSD 118
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
+A EG+ E+ + K ++ T+ V + +
Sbjct: 119 SIAAEGLEYSEFREQVRKEIAATEARNALVRRRINILPAEVDNLANILAQETNATVQYKI 178
Query: 200 RHVPAIADPSNA 211
H+ + +
Sbjct: 179 GHIQLRVNDGDD 190
Score = 40.6 bits (92), Expect = 0.73, Method: Composition-based stats.
Identities = 24/281 (8%), Positives = 79/281 (28%), Gaps = 12/281 (4%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
NI P+ + + N K + + + +++
Sbjct: 150 RRINILPAEVDNLANILAQETNATVQYKIGHIQLRVNDGDDASAIEQQAKEIVAKLNNGS 209
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
++ + +++ + +F + ++ P S + I +
Sbjct: 210 DFATMAYTYSKGPKALQGGDWGWMRKEEMPTIFADQVGVQNKGSIIGPFRSGVGFHILKI 269
Query: 472 IPARDRKLEEVLT----DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + V + + + + V + N+++ F ++ +
Sbjct: 270 EDVKGLETVAVTEVNARHILIRPTVILSDDGVQKELNEIIARIQSGEATFGELARQYSQD 329
Query: 528 LLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGP 583
+ Q + + + QV + P + P + + + +V +
Sbjct: 330 PGSAAQNGELGYQTSDLYVPEFKHQVDTLPEGKISQ-PFKTVHGWHIVEVLDRRQVDRTD 388
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQY---SVTVHDN 621
K+K L + + + L++ + ++N
Sbjct: 389 SAMKNKAYRILFNRKFNEEASAWLQELRASAFVEMIKDNEN 429
>gi|312878320|ref|ZP_07738236.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
lactoaceticus 6A]
gi|311794903|gb|EFR11316.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 343
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/190 (11%), Positives = 56/190 (29%), Gaps = 22/190 (11%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
V I +++ + F+ S TV+ + +K+ F+ + +
Sbjct: 17 GVVGFIVAILVAMFFVF---------SSSLQTVLEINNEKINKKEFLMRYNILKQNAIEM 67
Query: 71 IGFVVNSE-----RARSVGLDKKILDNLVSGATLDQFIEDIGLEAD---HGRVWGEIARS 122
+ L K+++ L++ Q + G++ V I
Sbjct: 68 SNRPDILDIEYSGMKYKDWLKNKVIELLITETLCLQEAKKRGMKLTFAEEQEVNNYINNI 127
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
++K++ ++F L + NE+ + + + + + Q
Sbjct: 128 K-----NDKYAREMFYEYLKKIKSNEELFKKQLLRERLIDKLYKEITKNVTLKEQEMKQY 182
Query: 183 KRFYFENRSV 192
+
Sbjct: 183 YENNKNEYRM 192
Score = 47.9 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 26/213 (12%), Positives = 63/213 (29%), Gaps = 5/213 (2%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D +++ + + I E+L + ++ + K + + + ++K+ +
Sbjct: 130 DKYAREMFYEYLKKIKSNEELFKKQLLRERLIDKLYKEITKNVTLKEQEMKQYYENNKNE 189
Query: 479 LEEVLT-DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN----Q 533
V D+ + + E ANQL+ + G F K +
Sbjct: 190 YRMVKVVDIFLRVENEQQKAEKEKLANQLMAKIKNGGSIFDLAQKYSEITTKNGQKGVID 249
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
R + FG +VF+ + ++ + K +
Sbjct: 250 YFRKGEKESEFGSVFEEKVFNLKKGEISEIIQTLNGYHIAQIIDEKFAPYESVKGEIEQS 309
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L + + + L+ + + N I
Sbjct: 310 LKKQKKDKVFQEYLNELRKKSVIKEFRNRIATI 342
>gi|33594430|ref|NP_882074.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
Tohama I]
gi|33597875|ref|NP_885518.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
parapertussis 12822]
gi|81713668|sp|Q7W5E0|PLP1_BORPA RecName: Full=Probable parvulin-type peptidyl-prolyl cis-trans
isomerase; Short=PPIase; AltName: Full=Rotamase; Flags:
Precursor
gi|167016622|sp|P40415|PLP1_BORPE RecName: Full=Probable parvulin-type peptidyl-prolyl cis-trans
isomerase; Short=PPIase; AltName: Full=Protein p13;
AltName: Full=Rotamase; Flags: Precursor
gi|33564505|emb|CAE43820.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
Tohama I]
gi|33574304|emb|CAE38637.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella
parapertussis]
gi|332383841|gb|AEE68688.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis
CS]
Length = 258
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 1/151 (0%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ ++ + + + K ++K E AN L+ + F D+ K
Sbjct: 108 VTDAQVKAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQVKSNKNKFDDLAKKNSKD 167
Query: 528 LLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
+ + + + V + P++ + V +V +++
Sbjct: 168 PGSAERGGDLGWAPATNYVQPFAEAVTKLKKGQLVDKPVQTQFGWHVIQVDDTRPVEFPA 227
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
D+ L +M+ + L + L+ Q +
Sbjct: 228 MDQVRPQLEEMLRQQTLANYQKQLREQAKIQ 258
Score = 40.2 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V +V + + S K + S L ++I +++
Sbjct: 20 QNVATVNGKPITQKSLDEFVKLVVSQ-----------GATDSPQLREQIKQEMINRQVFV 68
Query: 101 QFIEDIGL 108
Q E G+
Sbjct: 69 QAAEKDGV 76
>gi|290959830|ref|YP_003491012.1| lipoprotein [Streptomyces scabiei 87.22]
gi|260649356|emb|CBG72471.1| putative lipoprotein [Streptomyces scabiei 87.22]
Length = 225
Score = 55.2 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/170 (12%), Positives = 48/170 (28%), Gaps = 6/170 (3%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVGLDKKILDNLVSGATL 99
VG+ ++ + N + ++ A+S L + L+ +V L
Sbjct: 33 AAAVVGQDRITVAQLENRVNEVRTAQRAVSTDDSQYQQAVAQSSALTRNTLNGMVLEKVL 92
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
DQ ++D G+ V A G + + L R + + + +
Sbjct: 93 DQALKDAGVTVTRKEVQKYRADLEAQAGGA----EALETAYLQRYSVAPGQLEESLRSDV 148
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
+ + K ++ +D + + S
Sbjct: 149 EVQKLSAALGADLNTPEGGAVFWKALSKASKELDVDLNPRYGSWGVDPSS 198
>gi|218529730|ref|YP_002420546.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
chloromethanicum CM4]
gi|240138037|ref|YP_002962509.1| putative cell-binding factor 2 precursor (Major antigen peb4A),
cbf2 [Methylobacterium extorquens AM1]
gi|218522033|gb|ACK82618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
chloromethanicum CM4]
gi|240008006|gb|ACS39232.1| putative cell-binding factor 2 precursor (Major antigen peb4A),
cbf2 [Methylobacterium extorquens AM1]
Length = 300
Score = 55.2 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/224 (13%), Positives = 65/224 (29%), Gaps = 10/224 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+++ + ++ LP VD K + D +A
Sbjct: 62 DLAIAAEDPALSLPGVDEGAKQNLLVDYMVDLKVGAQAAESAKVGDAPEFKRKLAYFRDK 121
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEG 514
+ E + E ++ K++K EEV ++ + + K G
Sbjct: 122 LLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVRARHILVESEDEAKKIAARVKGG 181
Query: 515 KNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
++F I + + + + + F V P++ + V
Sbjct: 182 EDFAKIAGEVSKDPGSKTEGGDLGWFSQERMVKPFADAAFKMTPGQV-SDPVKTQFGWHV 240
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+V + PV D+ + Q + + I L+ V
Sbjct: 241 LRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284
>gi|77917708|ref|YP_355523.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus
DSM 2380]
gi|77543791|gb|ABA87353.1| parvulin-like peptidyl-prolyl isomerase [Pelobacter carbinolicus
DSM 2380]
Length = 307
Score = 55.2 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/288 (11%), Positives = 80/288 (27%), Gaps = 23/288 (7%)
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE--DYKRLEEFLALGTSMDEISRRE 408
+ PS + + + Q + A ++ K E+ L I
Sbjct: 20 CKDQDRLPSQVLLRIDGRTVSLEQFQHDFAQILPRDRVLPKDEEQALRRSYLAQRIDHEL 79
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ + +++ + + F D L+ + L + +
Sbjct: 80 LLAEATRRKLSVTPAELQQAIASHLDRYPSGDFERMLADQGLAVEDWQRLLQEQLL---V 136
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVS---SKANQL----------VLEYSKEGK 515
++ + R ++ + + KA Q+ LE ++G
Sbjct: 137 EKVLALMVRDKVDIADEEINAYFAAHRQSFARPEQVKARQITVPDEAQGRQALEMLRQGT 196
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
F ++ + S + VF P + E+ Y +F
Sbjct: 197 PFAEVARRCSISPDADQGGDMGTFARGEMPEAFDKAVFGLPAGRISDLT-ESDYGYHIFL 255
Query: 576 VTNSKVGPVQEKD----KFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
V + D + ++ L + + L + L+ + ++ +
Sbjct: 256 VEQHLPARPPDLDTVRGEIVAQLRKQQEEQLYQDWLQSLRQEAAIEID 303
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 31/286 (10%), Positives = 67/286 (23%), Gaps = 9/286 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S ++ + + V F + + Q L V+ + L + L + L
Sbjct: 28 SQVLLRIDGRTVSLEQFQHDFAQILPR-----DRVLPKDE--EQALRRSYLAQRIDHELL 80
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
L + IA L F + LA E + +
Sbjct: 81 LAEATRRKLSVTPAELQQAIAS-HLDRYPSGDFERMLADQGLAVEDWQRLLQEQLLVEKV 139
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
V N ++ + V + +
Sbjct: 140 LALMVRDKVDIADEEINAYFAAHRQSFARPEQVKARQITVPDEAQGRQALEMLRQGTPFA 199
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ + + E + + + LV +
Sbjct: 200 EVARRCSISPDADQGGDMGTFARGEMPEAFDKAVFGLPAGRISDLTESDYGYHIFLVEQH 259
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
+++ G+ QL ++Q + L L S +E ++
Sbjct: 260 LPARPPDLDTVR-GEIVAQLRKQQEEQLYQDWLQSLRQEAAIEIDW 304
>gi|307946740|ref|ZP_07662075.1| SurA N- domain family [Roseibium sp. TrichSKD4]
gi|307770404|gb|EFO29630.1| SurA N- domain family [Roseibium sp. TrichSKD4]
Length = 291
Score = 55.2 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/179 (11%), Positives = 48/179 (26%), Gaps = 15/179 (8%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
+ + + + V V + + K L + Q+ + A
Sbjct: 1 MGGFGLTPASAGIKVVVNGKPITTYDINQRAK--LIRLIQRSSVAASRREAEK------- 51
Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
L+ + IG++ V A ++ K + + L + G+N +
Sbjct: 52 --ELIDDRLRLEEASRIGVKISEAEVNNAYANI----ARNVKLTPAKLTAGLRQSGVNPQ 105
Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
D L+ V + ++ + + V N + P
Sbjct: 106 TLKDRLKAQLAFQQSVRRRFNSQVDVDESDIINALRKSDDENKNISVEYNLQRVIVVVP 164
>gi|253575648|ref|ZP_04852984.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251844986|gb|EES72998.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 398
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/295 (11%), Positives = 80/295 (27%), Gaps = 27/295 (9%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
F+ + + V +V ++ + ++ L NL+
Sbjct: 126 FATNKAEAVATVNGVEITKDRLYEEL---------------------AANGGEQALTNLI 164
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
+ ++Q + V EI G S + L + G+ + +
Sbjct: 165 NQELVNQEAAKNNITITDADVDAEIETYKTQFG-----SEEALNQALEQYGMTMDDLLKQ 219
Query: 155 YTKMLSRTDVVGMFVG-GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
L T ++ + + K + V V+ D +
Sbjct: 220 VEMELKLTKLLEPQINVTDEQVKETFETYKDSFNTPEQVRTSVILVATEEEAKDIVKQLK 279
Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
++ + ++E + +E + K + +
Sbjct: 280 EGADFAELAKSKSLDTATKDQGGDTDFFARGEMEEAVEEAAFKLAKGEISEPVKTSEGYQ 339
Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
+ ++KEA A KK + L +Q S+S L + + D+
Sbjct: 340 VIKVTDKKEAHTATLEEKKDEIRKSLISQQVSSMSGAWLEDVRSKAKITNTFTDA 394
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/264 (12%), Positives = 80/264 (30%), Gaps = 15/264 (5%)
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ + K + ++ + + + + I+ + I+
Sbjct: 135 ATVNGVEITKDRLYEELAANGGEQALTNLINQELVNQEAAKNNITITDADVDAEIETYKT 194
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
F ++ + + L + + L+K + + E+
Sbjct: 195 QFGSEEALNQALEQYGMTMDDLLKQVEMELKLTKLLEPQINVTDEQVKETFETYKDSFNT 254
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
E+V T V + + +++ KEG +F ++ K+ T +Q D
Sbjct: 255 PEQVRTSVILVATEEEAKD---------IVKQLKEGADFAELAKSKSLDTATKDQGGDTD 305
Query: 539 NEN-KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISY 593
F + P++ Y V KVT+ K ++KD+
Sbjct: 306 FFARGEMEEAVEEAAFKLAKGEI-SEPVKTSEGYQVIKVTDKKEAHTATLEEKKDEIRKS 364
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVT 617
L + + + ++S+ +T
Sbjct: 365 LISQQVSSMSGAWLEDVRSKAKIT 388
>gi|302389639|ref|YP_003825460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermosediminibacter
oceani DSM 16646]
gi|302200267|gb|ADL07837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermosediminibacter
oceani DSM 16646]
Length = 297
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 7/157 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ I E + + +K + E KAN+++ + K G++F ++ K
Sbjct: 137 ISITEEEIKSYFEENKDNFAREKQVRARHILVENEEKANEVIAKL-KSGEDFAELAKQYS 195
Query: 526 ASLLTTNQINRMDNEN-KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
T + + + FS V + P++ Y + KV K
Sbjct: 196 TDTATKEKGGDLGFFGRGDMVKEFEEAAFSLKVGEISS-PVKTQYGYHIIKVEEIKEAQE 254
Query: 585 ----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ KDK L + + + L QY V
Sbjct: 255 ANYEESKDKIKDILLNQKVQQEYSTWMQELYQQYEVE 291
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 29/132 (21%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
IR+ + V + + + + S V V +++ + +
Sbjct: 6 KIRRKT---VTYLIIATAILALI-----AGCSPGSSKEVVARVNGEEISKDELYDVMVKL 57
Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+G K+ LD LVS +D + + + E+ +
Sbjct: 58 VG---------------------KEALDYLVSQKIIDLEAKKQNINVSEEDIQRELEKVY 96
Query: 124 LFHGKDNKFSHD 135
++G + F+ +
Sbjct: 97 EYYGGEEAFTQN 108
>gi|285808215|gb|ADC35749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [uncultured bacterium
293]
Length = 392
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/156 (17%), Positives = 48/156 (30%), Gaps = 11/156 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK--KILDNLVSGA 97
+VSV V S F I+ G + D +IL +
Sbjct: 31 ERVIVSVNGGIVSQSEFEQ------RQIAAVQGARIGPSEVEKYLRDNNARILQEAIDDL 84
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
L Q ++G + V I +N S +L REG+ + + +
Sbjct: 85 LLVQRASELGFKVPTTYVDETIEGIK---KDNNIPSDQDLQDQLRREGMTLSDLRRNIER 141
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+SR V+ + G + +A+ +
Sbjct: 142 QVSRRWVLQRELEGKTSVSDAEARAEYQKNKAEYDK 177
Score = 44.1 bits (101), Expect = 0.067, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 6/121 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
++A V + ++ G++F + K+ ++ N + D VF+ P
Sbjct: 194 ATRARAED-VAKRARAGEDFAALAKSTSSAASAKNGGELGQLSHTDLAPDLARIVFALPK 252
Query: 558 EMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P+ + + KV + V Q K + L Q D I L+
Sbjct: 253 GGV-TDPVPVAKGFRILKVEDRSEGGLVPFEQVKAEITRKLVQEKASGEYDRYIEGLRKX 311
Query: 614 Y 614
Sbjct: 312 A 312
>gi|300361160|ref|ZP_07057337.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus gasseri JV-V03]
gi|300353779|gb|EFJ69650.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus gasseri JV-V03]
Length = 298
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/216 (14%), Positives = 73/216 (33%), Gaps = 8/216 (3%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D K V + V ++ + L +K +
Sbjct: 73 DVTQKQVDKEYNKYKKQYGSQFDSVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQ 132
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---IN 535
++ + + + S A ++ + K+G +F+ + K T N +
Sbjct: 133 EKKAWKNYQPEVTVQHILVSKKSTAEDIIKQL-KDGGDFKKLAKKYSTDTATKNDAGKLP 191
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISY 593
D+ + + F + P++ Y V K+ +K + K + +
Sbjct: 192 AFDSTDSTLDSSFKTAAFKLKTGEITTTPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQ 251
Query: 594 LTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ Q M++D ++ SVIA + + V++ D ++ L
Sbjct: 252 IYQSMSEDQSVMRSVIATVLKRADVSIKDKDLKNVL 287
>gi|165933466|ref|YP_001650255.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str.
Iowa]
gi|165908553|gb|ABY72849.1| peptidyl-prolyl cis-trans isomerase [Rickettsia rickettsii str.
Iowa]
Length = 282
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 64/161 (39%), Gaps = 6/161 (3%)
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+Y+ I + + + V K+ K + +AN + + SK G NF +
Sbjct: 113 NYIKSNITDKMFDDEYNKYVVNLKGKEQIKVAHILVKSQKEANDIKTKLSKGG-NFTKLA 171
Query: 522 KNLGASLLTTNQINRMD----NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
+ L + + + N+ + + F+ V V P++ + + KV
Sbjct: 172 EELSLDKASASNGGVIGYILLNQPGQLVPEFEKKAFALKVNEVST-PVKTDFGWHIIKVL 230
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K P+ K++ + ++ ++L IA L+++ +V +
Sbjct: 231 EKKPVPIPTKEEAKVTIDNILAAEILKKYIADLEAKANVKI 271
>gi|239906715|ref|YP_002953456.1| hypothetical protein DMR_20790 [Desulfovibrio magneticus RS-1]
gi|239796581|dbj|BAH75570.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 597
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 47/179 (26%), Gaps = 10/179 (5%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
R+ R W L + F +WG G V V + + + ++
Sbjct: 3 RRLGRGWR---LAAALVLSFCLWGCGRDTADEPG--VVAVVNGSPIRLAELE--MRNDVS 55
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
ISQ E R+ + V + Q ++ +G + A
Sbjct: 56 RISQPAVDNPAVEDLRAGLGAAL--ADAVVARLVGQELKRLGQAPTPEELEKAEAAVRA- 112
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
F + + E + + ++ G+ + + +
Sbjct: 113 DYPGEAFERMLLEEHIDLARWREMLADRLALEKFRQDVLLPGQRVGVSEAAAYYKEHQA 171
>gi|219685287|ref|ZP_03540106.1| basic membrane protein [Borrelia garinii Far04]
gi|219673060|gb|EED30080.1| basic membrane protein [Borrelia garinii Far04]
Length = 336
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/203 (9%), Positives = 60/203 (29%), Gaps = 28/203 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGM 66
++++ + L ++ + S + ++ V + + + + F + +
Sbjct: 2 KSFLFLVILGIMGI-----------NSFAQNTPVAIINLYKNEIITKTGFDSKV----DI 46
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+ G + + K++L L++ Q G++ V I
Sbjct: 47 FKKTQGRDLTAAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT----Q 96
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ + + ++G N E + + LS +V + +
Sbjct: 97 FGLVNLTDEQIKQMIEKQGTNWSELLASMKRSLSSQKLVLKQAQPRFSEVKTPSEKEIVE 156
Query: 187 FENRSVDYIVLNNRHVPAIADPS 209
+ + V + + S
Sbjct: 157 YYEANKTKFVNPDISRVSHIFFS 179
>gi|299536706|ref|ZP_07050016.1| hypothetical protein BFZC1_11817 [Lysinibacillus fusiformis ZC1]
gi|298727820|gb|EFI68385.1| hypothetical protein BFZC1_11817 [Lysinibacillus fusiformis ZC1]
Length = 323
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/187 (10%), Positives = 56/187 (29%), Gaps = 29/187 (15%)
Query: 5 IRKASRTWVAKIFLVVLFVP----FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
+++ +T A + VL + F+ W + + + V ++ + ++ +
Sbjct: 21 LQRRLKTKPALAVIAVLLLGNVLWFISWLIPNKGQEIGSDEQVAAIDGDVITRQEWMIAM 80
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ G K+ L NLV+ +++ + ++ + E+A
Sbjct: 81 EERYG---------------------KETLQNLVNETVMEKAAKTYKIKVTDKEIDLELA 119
Query: 121 RSPL----FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
F S + ++ + I +K + G+ +
Sbjct: 120 LMRSAQDKFDTAMQNLSAEQLRQKIRSQLILDKVLTKDVVIEEENVEKYYEENQGLYNTK 179
Query: 177 LLLDQAK 183
Sbjct: 180 TSYRTNF 186
>gi|327541927|gb|EGF28434.1| hypothetical protein RBWH47_04439 [Rhodopirellula baltica WH47]
Length = 827
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 50/162 (30%), Gaps = 17/162 (10%)
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
V L + E I A +LEEV +V +T + A + + K
Sbjct: 638 VDLENAKSYVSWKTEDIEAYTPELEEVRDEVILAIRTQEARNLAQKAAEGIAEAVGQGKK 697
Query: 516 NFRDIGKNLGASLLTT-NQINRMD------------NENKFFGYDGISQVFSGPVEMVKC 562
I K A+L T ++ E G + + VFS V VK
Sbjct: 698 LADAIPKGKEANLHTDLGPFTWLNMVGMMQTSLGNVPELNAVGNEFMQSVFSTEVGSVKV 757
Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD 604
P Y V + + E ++ +Q + +
Sbjct: 758 TPNAPQSVYYVVQPIEFQP----EVEQLREQFSQPQQRFMAQ 795
>gi|224532128|ref|ZP_03672760.1| basic membrane protein [Borrelia valaisiana VS116]
gi|224511593|gb|EEF81999.1| basic membrane protein [Borrelia valaisiana VS116]
Length = 336
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/199 (11%), Positives = 58/199 (29%), Gaps = 23/199 (11%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQK 70
K FL ++ + + + S + ++ V + + + + F + + +
Sbjct: 1 MKSFLFLIILGTV------GINSFAQNTPVAIINLYKNEIITKTGFDSKV----DIFKKT 50
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
G + K++L L++ Q G++ V I
Sbjct: 51 QGRDLTVAE------KKQVLQVLIADVLFSQEASKQGIKISDDEVMQTIRT----QFGLV 100
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+ + + ++G N E + + LS +V + + +
Sbjct: 101 NLTDEQIKQMIEKQGTNWGELLSSMKRSLSSQKLVLKQAQPKFSEVKTPSEKEIIEYYEA 160
Query: 191 SVDYIVLNNRHVPAIADPS 209
+ V + + S
Sbjct: 161 NKTKFVNPDIARVSHVFFS 179
>gi|292489392|ref|YP_003532279.1| survival protein SurA [Erwinia amylovora CFBP1430]
gi|292898389|ref|YP_003537758.1| survival protein A [Erwinia amylovora ATCC 49946]
gi|291198237|emb|CBJ45343.1| chaperone (peptidyl-prolyl cis-trans isomerase) (survival protein
A) [Erwinia amylovora ATCC 49946]
gi|291554826|emb|CBA22684.1| survival protein SurA precursor [Erwinia amylovora CFBP1430]
Length = 431
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ LV L Q + GL+ ++ IA + NK S D SR
Sbjct: 62 DDRTLRHQILERLVMDNILLQKAKQAGLQVSDAQLDQAIANI----AQQNKMSIDQLRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA +G+N Y + K ++ ++V V
Sbjct: 118 LAYDGMNYASYREQIRKEMATSEVRNSEVR 147
Score = 37.5 bits (84), Expect = 7.0, Method: Composition-based stats.
Identities = 22/211 (10%), Positives = 54/211 (25%), Gaps = 6/211 (2%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D I L + V G ++ +
Sbjct: 222 DPQALKGGNMGWGRIQELPSLFAQALVTAKKGDIIGPVRSGVGFHILKVNDMRGDNQSIS 281
Query: 479 LEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ EV + + T ++ K Q+ + F K L + NQ +
Sbjct: 282 VTEVHARHILLKPSPIMTDDQARQKLQQVASDIKSGKLTFSAAAKQLSQDPGSANQGGDL 341
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISY 593
+ + F + + P+ + + + ++ +K++
Sbjct: 342 GWSSAEVFDPAFRDALLRLKKGQIGD-PVHSSFGWHLIELMDTRKVDKTDAAKKERAYRL 400
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
L + + + ++ V + D Q
Sbjct: 401 LFNRKFAEEAQTWMQEERAAAYVKILDANAQ 431
>gi|188580734|ref|YP_001924179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
populi BJ001]
gi|179344232|gb|ACB79644.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium
populi BJ001]
Length = 300
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/224 (13%), Positives = 65/224 (29%), Gaps = 10/224 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+++ + ++ LP VD K + D +A
Sbjct: 62 DLALAGEDPALSLPGVDEGAKQNLLVDYMIDLKVGAQAAEAAKVGDSPEFKRKLAYFRDK 121
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEG 514
+ E + E ++ K++K EEV ++ + + K G
Sbjct: 122 LLLDDYLEREAKKAVTPEAAKALYEQTVKSMKPEEEVHARHILVESEDEAKKIAARIKGG 181
Query: 515 KNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
++F I + + + + + F V P++ + V
Sbjct: 182 EDFAKIAAEVSKDPGSKTEGGDLGWFTQERMVKPFADAAFKMTPGQV-SDPVKTQFGWHV 240
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+V + PV D+ + Q + + I L+ V
Sbjct: 241 LRVEEKRTKPVPTFDEMKEQIDQYLTRKAQQDTIVKLREAAKVE 284
>gi|40063240|gb|AAR38067.1| PPIC-type PPIASE domain protein [uncultured marine bacterium 577]
Length = 263
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
++A ++ + K GK F +I K+ + N+ + + + + +
Sbjct: 146 EAEAKDIIAKIKKGGK-FEEIAKDRSIDDGSKNKGGELGWSSARSYAQPFAEALVKLKKG 204
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+++ + V + + + + + Q + + + + LK + +
Sbjct: 205 EITQAPVKSSFGWHVIRSNGMRPLKIPPFKEVKQKVQQRILQQKFQAYLEELKDKAKIE 263
>gi|260685020|ref|YP_003216305.1| putative foldase lipoprotein [Clostridium difficile CD196]
gi|260688678|ref|YP_003219812.1| putative foldase lipoprotein [Clostridium difficile R20291]
gi|260211183|emb|CBA66654.1| putative foldase lipoprotein (late stage protein export
lipoprotein) [Clostridium difficile CD196]
gi|260214695|emb|CBE07344.1| putative foldase lipoprotein (late stage protein export
lipoprotein) [Clostridium difficile R20291]
Length = 321
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/176 (13%), Positives = 46/176 (26%), Gaps = 5/176 (2%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR-----SVGLDKKIL 90
S S TV +V K+ F + + Q G + + IL
Sbjct: 11 SSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYGKDIWDKEVEKGVKYKDKFKDLIL 70
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
D L++ + + L V GKD K+ + + E + +++
Sbjct: 71 DQLITTEVIYSQAKKDNLLPKKEDVEKSFKELKDAMGKDEKYKEQLKKLGIDDEFLRDQQ 130
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
D + + F + +I+L
Sbjct: 131 EKDLAMQNYQSNFAKKTKISDEEMKKYYDTHKDEFKKDEVEASHILLKTVDDNNKP 186
Score = 51.0 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/284 (11%), Positives = 77/284 (27%), Gaps = 3/284 (1%)
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
+ +I + K + + + +V + + L +++
Sbjct: 38 YKDSMEQTYGKDIWDKEVEKGVKYKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEK 97
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ K K + + +E+ L + + K Y
Sbjct: 98 SFKELKDAMGKDEKYKEQLKKLGIDDEFLRDQQEKDLAMQNYQSNFAKKTKISDEEMKKY 157
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
E +L V + K + + K + L+ K G++F + K
Sbjct: 158 YDTHKDEFKKDEVEASHILLKTVDDNNKPLSDKEKAEAKKKAEEALKEVKSGEDFAKVAK 217
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
++ + FS V +E Y + KVT+ ++
Sbjct: 218 KYSQDTSASDGGKLGFFSRGQMVAEFEDAAFSMKKGEVSDL-VETQYGYHIIKVTD-RIN 275
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + K+ I L + V + +I +
Sbjct: 276 EQTSFEDAKETIKDQLLKNKYQEQIEKLTKEAKVEKDEKVINKI 319
>gi|312173557|emb|CBX81811.1| survival protein SurA precursor [Erwinia amylovora ATCC BAA-2158]
Length = 431
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ LV L Q + GL+ ++ IA + NK S D SR
Sbjct: 62 DDRTLRHQILERLVMDNILLQKAKQAGLQVSDAQLDQAIANI----AQQNKMSIDQLRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA +G+N Y + K ++ ++V V
Sbjct: 118 LAYDGMNYASYREQIRKEMATSEVRNSEVR 147
Score = 37.5 bits (84), Expect = 6.0, Method: Composition-based stats.
Identities = 23/211 (10%), Positives = 54/211 (25%), Gaps = 6/211 (2%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D I L + V G ++ +
Sbjct: 222 DPQALKGGNMGWGRIQELPSLFAQALVTAKKGDIIGPVRSGVGFHILKVNDMRGDNQSIS 281
Query: 479 LEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ EV + + T ++ K Q+ E F K L + NQ +
Sbjct: 282 VTEVHARHILLKPSPIMTDDQARQKLQQVASEIKSGKLTFSAAAKQLSQDPGSANQGGDL 341
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISY 593
+ + F + + P+ + + + ++ +K++
Sbjct: 342 GWSSAEVFDPAFRDALLRLKKGQIGD-PVHSSFGWHLIELMDTRKVDKTDAAKKERAYRL 400
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
L + + + ++ V + D Q
Sbjct: 401 LFNRKFAEEAQTWMQEERAAAYVKILDANAQ 431
>gi|262195599|ref|YP_003266808.1| hypothetical protein Hoch_2377 [Haliangium ochraceum DSM 14365]
gi|262078946|gb|ACY14915.1| hypothetical protein Hoch_2377 [Haliangium ochraceum DSM 14365]
Length = 339
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/212 (11%), Positives = 66/212 (31%), Gaps = 13/212 (6%)
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+ + + P + + + AL +++ V + E A +
Sbjct: 130 RRFIEDEFERRYPDPASAPRAELLEVYEALKGQYVRPALRHTAFLRVPVAEDSEAGGDED 189
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
+ V + + V+ +++ + E + GK +I +L +
Sbjct: 190 RQAKALVDEIYAAVRERDDLET------AELERVGK---EIAGEREVEVLRAP----LAY 236
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
+ + S P + + +T + + D+ I L Q+
Sbjct: 237 PGARLVPEYLEPALSLTEPGTVAPPARTQWGWDIILLTELEPALDRSPDEVIDELFQLWQ 296
Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
+ + L+ +VT+H + + + E+
Sbjct: 297 RRAFQQWLRALREPAAVTIHQDTLAAFQQAEE 328
>gi|257464029|ref|ZP_05628414.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. D12]
gi|317061550|ref|ZP_07926035.1| predicted protein [Fusobacterium sp. D12]
gi|313687226|gb|EFS24061.1| predicted protein [Fusobacterium sp. D12]
Length = 549
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 62/561 (11%), Positives = 156/561 (27%), Gaps = 73/561 (13%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALF------SVSGSSTVVSVGRQKVPFSSFI 57
IRK + + K + V+ + + G+ S + + +K+
Sbjct: 2 AIRKFRK--MMKPVIFVVAIAMIGSGVWLTFTNLLQHRSAGETQYAYQLNGEKISKIKIA 59
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
L +++ + + + +++ Q ED+ ++ V
Sbjct: 60 REENALLDQLNKMGQGKTSKDLISLI-----AFQKVINDELTLQLAEDMKIKVPSSEVKE 114
Query: 118 EIARSPLFHGKDNKF---------SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
E + G +F S F + L + +K + +
Sbjct: 115 EYEKIEESIGNKEQFRRMLSVQGYSKKSFQAMLQENLLLQKVMEKFEEEGKKAGKDGNLL 174
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE---------- 218
+ ++ E + V+ + I + A
Sbjct: 175 YQEALAKKRNEMKLEKLAPEYEKLQMKVVEEKDGFKITNVDMADRVTQLMLMTGEEETKV 234
Query: 219 ---------------KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
K K + + + E E+Q + + +
Sbjct: 235 TEEVKKQFEEGIAFAKKAQERGVVVSKDLPINVQLAEYAKVFFEKLKSEVQVDELELSKF 294
Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE--------------------Q 303
+ + R + + S + + AEE
Sbjct: 295 FKANHNRYNQHASIDVNVAVLKIAASKEDIAAIEKKAEEILQGLTKENFAKTGEELQKKS 354
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
++ LG F K + ++ FS + + VI FG + ++ ++ + +
Sbjct: 355 TDTVIYEELGWFEKGAMVK-EFEEAAFSSKEAQIYPKVISTQFGKHLLYIQEVQENKVKA 413
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
+ +++A+Q I K+ + + ++L++ ++ I++ + + VD +G
Sbjct: 414 AHILFREVASQDSIAKSLREAETMKEKLDKKEVTFETLKNINKNL-LFTHMFTDVDKSGM 472
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
+ + G + + + LEEV
Sbjct: 473 IPGFVNDTKLVETMYAAE----MNKVQIYADDYVTKAGIIYLFSKTKEVQDKVVSLEEVR 528
Query: 484 TDVKKDWKTVKTAEEVSSKAN 504
V+ ++K + +E+ N
Sbjct: 529 DKVQDEYKAWRAQQELQKLMN 549
>gi|91204225|emb|CAJ71878.1| similar to peptidyl-prolyl cis-trans isomerase [Candidatus Kuenenia
stuttgartiensis]
Length = 311
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 4/126 (3%)
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLG--ASLLTTNQINRMDNENKFFGYDGISQVFS 554
E+V+ N L E K G +F ++ + S + + + +S FS
Sbjct: 188 EKVAQLINTLKSELDK-GSDFEELAREYSDCPSASKGGDLGFIQRRGGTYDEPFLSTAFS 246
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ V P+++ Y + KVT K G + I + M + + ++ L+S+
Sbjct: 247 LRIGKV-SEPVKSEYGYHLIKVTGKKEGVAVNFEDVIDDVRSTMLDEEILGLLKRLRSEA 305
Query: 615 SVTVHD 620
+ +
Sbjct: 306 KIEIIQ 311
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 20/170 (11%), Positives = 53/170 (31%), Gaps = 11/170 (6%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
G + V V +K + + +++ +++ + ++I++ L++
Sbjct: 29 GENIAVVVNGKK-----------IKKDDVDKRLNMFKDADVETYNAIRQEIIEQLITDIL 77
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
L+ FI+ G+ + E+ + + LA G N ++
Sbjct: 78 LEDFIDKQGIVVTPMEMSRELLLIKKEIADNEGEADAFLRDMLASIGSNLYDFEKTIKHS 137
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
L+ + F E V +I ++ + +
Sbjct: 138 LALEKYFKGSLDSQNLKRFFEKNKHFFNGEAVRVSHIFIDTKKFNSGDMV 187
>gi|300715281|ref|YP_003740084.1| hypothetical protein EbC_06930 [Erwinia billingiae Eb661]
gi|299061117|emb|CAX58224.1| uncharacterized protein [Erwinia billingiae Eb661]
Length = 431
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
S + +Q+ G + + L +I++ LV L Q + G++
Sbjct: 39 ESDVDGMMQSVKSQ-AQQAGQQLPDD----KTLRHQIVERLVMDNILLQMAKQSGIQVTD 93
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ G I NK + D SRLA +G+N Y + + ++ ++V V
Sbjct: 94 AQLDGAIQNIAA----QNKMTPDQLRSRLAYDGMNYGTYREQIRREMTISEVRNNEVR 147
Score = 42.9 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 25/249 (10%), Positives = 69/249 (27%), Gaps = 8/249 (3%)
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
+ ++ + L + + K+ D I L
Sbjct: 186 NPTQQQVDDQETLAKQLVSQSKSGADFGKLAI--TYSADPQALKGGNMGWGKIQELPSLF 243
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEV 499
+ + G ++ +++ + EV + V T E+
Sbjct: 244 AQALVTAKKGDIIGPIRSGVGFHILKVNDVRGESQNVSVTEVHARHILLKPSPVMTDEQA 303
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
K Q+V + + F + K L + NQ + + + + +
Sbjct: 304 RQKLEQVVADINSGKTTFAEEAKQLSQDPGSANQGGDLGWSSPEMYDPAFRDALMKLKKG 363
Query: 559 MVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ P+ + + + ++ + +K++ L + + + ++
Sbjct: 364 QL-SAPVHSSFGWHLIQLLDTRQVDKTDAAQKERAYRLLFNRKFAEEAQTWMQEQRAAAY 422
Query: 616 VTVHDNLIQ 624
V + D Q
Sbjct: 423 VKILDANAQ 431
>gi|95930211|ref|ZP_01312949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
acetoxidans DSM 684]
gi|95133674|gb|EAT15335.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfuromonas
acetoxidans DSM 684]
Length = 292
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 54/167 (32%), Gaps = 7/167 (4%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
++V + F+N+ + + +K ++ E + ++ +++ + Q
Sbjct: 6 ITVNGTPISQFDFVNAMQSYSMELYRKTADQLSEEEIE--QVQGLAVEQIIARELIFQTA 63
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
G A ++ E+ + S + F + L + GI++ Y + LS
Sbjct: 64 LAQGAIATDEQIKAEMDKVMANFP-----SEEEFFATLEKAGIDQDSYYRMLRQDLSVKM 118
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ + +A ++ + H+ N
Sbjct: 119 MTEKKLADAPSPAAEEVKAFYDENPDKMKKPGQVRASHILIKVTEDN 165
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 46/153 (30%), Gaps = 5/153 (3%)
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ P + +K +V T EE K +L E + + F D+ + A
Sbjct: 140 DENPDKMKKPGQVRASHILIKVTEDNREEAQKKIEELKNEVTGDAAQFGDLARQHSACPS 199
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
+ + FS + +E Y + VT K ++
Sbjct: 200 KDKGGDLGFFGPGSMVKEFDQAAFSLEPGQISDI-VETQFGYHLILVTERKDPESLTLEE 258
Query: 590 FISYLTQMMNKD----LLDSVIAYLKSQYSVTV 618
+ + LL + + +K + + +
Sbjct: 259 VAPQIESFIKDQKGAILLQAWVEEMKEKADIEI 291
>gi|148977503|ref|ZP_01814092.1| parvulin-like peptidyl-prolyl isomerase [Vibrionales bacterium
SWAT-3]
gi|145963298|gb|EDK28564.1| parvulin-like peptidyl-prolyl isomerase [Vibrionales bacterium
SWAT-3]
Length = 431
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 49/140 (35%), Gaps = 9/140 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ + + V S V V + S S K + G + S+
Sbjct: 8 LIAIAAACTVSTSFADPVELDSVRVIVNEGVILQSDIDTSMKTLRANAKK-SGQTLPSQD 66
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
LD+++L+ L+ Q E IG+ D R+ I + + + +
Sbjct: 67 V----LDEQVLEKLIIDTIQTQEAERIGVRIDDARLDQAIEGIAKDNNQTV----EQLTA 118
Query: 140 RLAREGINEKEYIDHYTKML 159
+A EG++ + + K +
Sbjct: 119 SVAEEGLSYNAFREQVRKEI 138
>gi|332798476|ref|YP_004459975.1| Foldase protein prsA [Tepidanaerobacter sp. Re1]
gi|332696211|gb|AEE90668.1| Foldase protein prsA [Tepidanaerobacter sp. Re1]
Length = 300
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/312 (8%), Positives = 85/312 (27%), Gaps = 22/312 (7%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLS-DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+ ++A I ++ L +P ++ + + ++ V + + + ++ QE G
Sbjct: 9 KKFLASIIVLSLAIPLILSACNTSTSAKKADNNVVARINDEVITRDELYDALVQENG--- 65
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
+L++L++ ++ + + V E+ + +G
Sbjct: 66 ------------------DAVLNSLIANKIVELEAKKQNITVSEEDVQKEVDKLAEQYGG 107
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
+ + + + + + I E ++ K L + +
Sbjct: 108 EEALTQFLEMYGYSLDEIKENIKMNLNVKKLLEPTIKIEESEIKSYFDENKASFDTPEQV 167
Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
S + + + K + + F + + E
Sbjct: 168 KASHILVDTEEKAKEVKQKLQDGEDFAELAKTYSTDTSNNQQGGELGYFSKGQMTPEFEE 227
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
+ L+A + K + ++ E + K + +
Sbjct: 228 AAFSLKAGEISDPVKTEFGYHIIKVEDKKEAKEATYEESKDEVKNILLEEKLSTAFSTWI 287
Query: 309 DISLGSFSKEYI 320
G + E +
Sbjct: 288 QEKFGEYKIETL 299
Score = 46.0 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 7/157 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++I+ES + D + K + KA ++ + ++G++F ++ K
Sbjct: 143 IKIEESEIKSYFDENKASFDTPEQVKASHILVDTEEKAKEVKQKL-QDGEDFAELAKTYS 201
Query: 526 ASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
Q + +K + FS + P++ Y + KV + K
Sbjct: 202 TDTSNNQQGGELGYFSKGQMTPEFEEAAFSLKAGEI-SDPVKTEFGYHIIKVEDKKEAKE 260
Query: 585 ----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ KD+ + L + + I +Y +
Sbjct: 261 ATYEESKDEVKNILLEEKLSTAFSTWIQEKFGEYKIE 297
>gi|145590048|ref|YP_001156645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048454|gb|ABP35081.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 484
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 47/531 (8%), Positives = 121/531 (22%), Gaps = 59/531 (11%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLI---------WGLSDALFSVSGSSTVVSVGRQKVPFSS 55
+R + V F ++ + V +
Sbjct: 2 LRSNCPIKLMNFIFFFAAVLFAGIVSAQDASKTTVATDGKVRNIDGVAAVVNTGYITRKD 61
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ G + A L K IL+ L+ Q E G +
Sbjct: 62 IDDRIAVLKKQ-----GTKLPEGEA----LRKVILERLILEKIQLQNAEQEGFYVSSKEL 112
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM-RP 174
IA + NK + +++ + ++Y + + + V +
Sbjct: 113 DKIIADTAA----KNKLTFVELKAKIEASSTSFEKYKQQLREEVIVSRYREREVDAKIKI 168
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
S+ +D + + A + + + K+ +
Sbjct: 169 SDAEIDNFISERNRAMLSGVTRPSPSANGGPEEIDVAQIFIPVDSGAGAGAQADAKKKAD 228
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
+L + + + + K + R ++L + G
Sbjct: 229 LLLREAKGDVDFLQLGAMAAKDNPQIK--FQELGYRPPDRLPQLFYEAVRNTGSGQVAGA 286
Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
A L + + S + + + T +++
Sbjct: 287 VVKSPAGYHV-------LKVLDRRSMAAGSPPPAQAAPQEPASTT----------PQNIA 329
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ + + +++Q + + + +F L E
Sbjct: 330 ITQTNARHILLRNRPGLSDQDAERRLQGYRDQVRAKTADFGDLAKKYSE----------- 378
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
D + + K + V G ++ I+
Sbjct: 379 ----DGSASNGGNLGWMGPGDLVPEFELAMNKLQIGEVSNPVKTEFGWHLIQVIE--RRE 432
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+E+ + ++ K + +L + + N D
Sbjct: 433 AQLTVEKQREFARAAIRSRKFEQAYQDWMRELRDTATVKILNVEDAATGNS 483
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 11/150 (7%), Positives = 43/150 (28%), Gaps = 4/150 (2%)
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + + + + ++ + + + +F D+ K +
Sbjct: 324 TPQNIAITQTNARHILLRNRPGLSDQDAERRLQGYRDQVRAKTADFGDLAKKYSEDGSAS 383
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKD 588
N N + + + V P++ + + +V + ++++
Sbjct: 384 NGGNLGWMGPGDLVPEFELAMNKLQIGEVSN-PVKTEFGWHLIQVIERREAQLTVEKQRE 442
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + + L+ +V +
Sbjct: 443 FARAAIRSRKFEQAYQDWMRELRDTATVKI 472
>gi|240849866|ref|YP_002971254.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
gi|240266989|gb|ACS50577.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
Length = 317
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 5/135 (3%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENK 542
+VK VKT +E + ++++ +G+NF +I K + +
Sbjct: 157 EDEVKARHILVKTRKEA-----EAIIKHLNKGENFEEIAKKSSTDGSAAVGGDLGYFSHG 211
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
F + P+E+ + + K+ + ++ D L + K
Sbjct: 212 QMVKPFEDAAFGLKIGEYTKQPVESPFGWHIIKLEDRRLKQPPAFDDVKEMLRTQLIKKR 271
Query: 603 LDSVIAYLKSQYSVT 617
+I L+S+ V
Sbjct: 272 YQELIVDLRSKMDVK 286
>gi|1213605|emb|CAA65154.1| orf1 [Campylobacter jejuni]
Length = 281
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/256 (11%), Positives = 84/256 (32%), Gaps = 13/256 (5%)
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
K+ + + K ++ A + + + + +D
Sbjct: 29 KELEKFYNQDENKLKYKDFAGKVMDFQSAKNEVAKDYALMQLKNVANAKFLDLKNGKDNF 88
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
++ I + A + Y+ V++ + P R++ EE +V
Sbjct: 89 QKDQNISESDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVL 148
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + + + + KA ++ + +G + + ++ + + D+E +F
Sbjct: 149 PMYLSEQARKNLEEKAKNSLVNF--KGDDIGFVSRDSSRESVKVSDKILNDSEFAYF--- 203
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-----KDKFISYLTQMMNKDL 602
+ VF+ + + N +++K+ K+ + K L + +L
Sbjct: 204 -LMNVFNTDQN--SSYVVINDNKAILYKINKQKLDMNSDKFEQYKTMLEQNLQNLKANEL 260
Query: 603 LDSVIAYLKSQYSVTV 618
++ LK Y + +
Sbjct: 261 KQELVDELKKIYPIKI 276
>gi|148284256|ref|YP_001248346.1| hypothetical protein OTBS_0439 [Orientia tsutsugamushi str.
Boryong]
gi|146739695|emb|CAM79505.1| conserved hypothetical protein [Orientia tsutsugamushi str.
Boryong]
Length = 291
Score = 54.9 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 45/157 (28%), Gaps = 16/157 (10%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ FL ++ V ++ +++ + V V + K + +
Sbjct: 2 NKILTFFLTIIVVC-------NSSGALAATKIVAIVDGTPITSHQLDKFGKVITFLHRSQ 54
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
++ ++ L+ L+ + G+EA + I K
Sbjct: 55 SLTSISDSELTTI-----ALEALIDRVIFLNEAKRYGIEASQDEINQFI----AMEEKAI 105
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
F + ++ ++ Y + + + M
Sbjct: 106 NLPDQYFKYAIKEAEVSYDAFMMFYEVRVIISKINRM 142
>gi|21673541|ref|NP_661606.1| hypothetical protein CT0711 [Chlorobium tepidum TLS]
gi|21646651|gb|AAM71948.1| lipoprotein, putative [Chlorobium tepidum TLS]
Length = 450
Score = 54.9 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 15/102 (14%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + +L G S+ S S V ++ +++
Sbjct: 2 KKITSLFFVLLFAILV------GCSEKSAQESNSGVAAVVNGVEITNRQIDYFYQRTAM- 54
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
+++E S L ++IL +L+ L +++ L
Sbjct: 55 ------PGMSAED--SANLKRRILSDLIRIELLAGKAKEMKL 88
>gi|282851249|ref|ZP_06260614.1| PPIC-type PPIASE domain protein [Lactobacillus gasseri 224-1]
gi|282557217|gb|EFB62814.1| PPIC-type PPIASE domain protein [Lactobacillus gasseri 224-1]
Length = 303
Score = 54.9 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 87/249 (34%), Gaps = 10/249 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ Y +++E A +++ + + + S V K V + V
Sbjct: 47 QYYNKMKESQAGQSTLASMIVSDALESQYGKEVTQ--KQVDKEYNKYKKQYGSQFDSVLE 104
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + L +K + ++ + + + S A
Sbjct: 105 QNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKNYQPEVTVQHILVSKKSTAED 164
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMVKC 562
++ + K+G +F+ + K T N + D+ + + F +
Sbjct: 165 IIKQL-KDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEITT 223
Query: 563 FPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTV 618
P++ Y V K+ +K + K + + + Q M++D ++ SVIA + + V++
Sbjct: 224 TPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQIYQSMSEDQSVMRSVIATVLKRADVSI 283
Query: 619 HDNLIQRYL 627
D ++ L
Sbjct: 284 KDKDLKNVL 292
>gi|117929118|ref|YP_873669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidothermus
cellulolyticus 11B]
gi|117649581|gb|ABK53683.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidothermus
cellulolyticus 11B]
Length = 321
Score = 54.9 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 33/110 (30%), Gaps = 12/110 (10%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ + L + G + +VG ++ + + L +
Sbjct: 6 SPLLAAMLGTAALAISACG-------PAHPGAAATVGDVRITDAQVQKAANVML-----Q 53
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ +A GL + +L L+ L + G+ V E+A
Sbjct: 54 DSGTRAAAQADPAGLRRDVLTRLIKDVLLQRAAASRGVTVSEADVQHELA 103
>gi|238650989|ref|YP_002916845.1| hypothetical protein RPR_06330 [Rickettsia peacockii str. Rustic]
gi|238625087|gb|ACR47793.1| hypothetical protein RPR_06330 [Rickettsia peacockii str. Rustic]
Length = 295
Score = 54.9 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 62/196 (31%), Gaps = 16/196 (8%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L+++ V F + S + V SV + + + F + + + V +
Sbjct: 4 LLLIITVFFTF-----NVAQASLPNIVASVNDEPITLNEF-----RARKKMIMALNNVES 53
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
A+ L +L +L+ + L Q+ D E + I NK H
Sbjct: 54 LTPAQDKQLSDLVLKSLIDESLLFQYAGDR--EIPQEEIENAIKSIE----DRNKMPHGS 107
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ L +N +I L + +++ ++ SN +D A + +
Sbjct: 108 LLQYLKSRSVNPDSFISQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEISMQ 167
Query: 197 LNNRHVPAIADPSNAV 212
+ +
Sbjct: 168 VFTSKDGGNKAFTQMN 183
>gi|146337720|ref|YP_001202768.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
gi|146190526|emb|CAL74525.1| putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
Length = 274
Score = 54.9 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 49/147 (33%), Gaps = 4/147 (2%)
Query: 473 PARDRKLEEVLTDV--KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
A + EE + +++ E +A + E +K G +F ++ K
Sbjct: 107 DAMKKVYEEASKQIGGEQEVHARHILVETEDEAKAVKAELAK-GADFAELAKKKSKDPGA 165
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
++ + + + + FS + P++ + + KV + E ++
Sbjct: 166 SDGGDLGFFTKEQMVPEFANVAFSMEPGKI-SDPVKTQFGWHIIKVEEKRNRKPPEFEQV 224
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVT 617
S + + + + L+ +
Sbjct: 225 KSQIETYVTRKAQADYVGKLREAAKIE 251
>gi|302560250|ref|ZP_07312592.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
gi|302477868|gb|EFL40961.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
Length = 215
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/161 (10%), Positives = 47/161 (29%), Gaps = 6/161 (3%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVGLDKKILDNLVSGATL 99
VG +++ S N + + ++ AR+ L + L ++V L
Sbjct: 33 AAAVVGGERITVSQLENRVDEVRAAQRAAVPDDAQYQQAIARTGTLTRDTLHSMVLDRVL 92
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
++ D G+ V + + + + L + GI + D++ +
Sbjct: 93 ERAARDAGVSVTRKEVQQ----MRSGLEQQTGGAEALEAAWLQQYGIPPQRLDDNFRLQV 148
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
+ ++ + ++ +
Sbjct: 149 QAQKLAQRLGTDTSRPEFWQALSEASKKLDVDLNPRYGDWD 189
>gi|325295072|ref|YP_004281586.1| SurA domain [Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065520|gb|ADY73527.1| SurA domain [Desulfurobacterium thermolithotrophum DSM 11699]
Length = 283
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 34/264 (12%), Positives = 74/264 (28%), Gaps = 23/264 (8%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
L+V F+ ++ L V V V + + +S ++
Sbjct: 4 LLVFFLVMVLLTLPSYAKIV--DYIVAVVNGEPILYSEL------------------LDY 43
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+ + K D+L+ L + GL + + F S + F
Sbjct: 44 AKTNRINNLKAARDSLIERKILLTEAKSEGLAVSDEELNRALEN---FIKNSGFKSKEEF 100
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
L +EG+ +E + + L ++G V + + + + + V +
Sbjct: 101 EKALKKEGLTLEEVKEKLKEQLLVAKLIGRNVKSKIRVSDIEVEKVCKEKKKKPVREVYY 160
Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
A+ +L K E K + + + K I ++
Sbjct: 161 IYVKDKQKANRIMEILDSGIPFEKVAKEYSEDKATAQNGGYLGKVTKGSLIKPLDIAVWS 220
Query: 258 EKNKEKYFSPEIRTVEQLVFPNQK 281
K K + ++
Sbjct: 221 TKPKTYKLVETKGGYYIIYVKKEE 244
>gi|329894605|ref|ZP_08270411.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase SurA) [gamma proteobacterium IMCC3088]
gi|328922959|gb|EGG30287.1| Survival protein SurA precursor (Peptidyl-prolyl cis-trans
isomerase SurA) [gamma proteobacterium IMCC3088]
Length = 421
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 46/396 (11%), Positives = 102/396 (25%), Gaps = 49/396 (12%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + S I+ + G E A L ++ LD L+ +
Sbjct: 28 DKVIAVVDDDVIMESELQERLIVVKNNITSR-GLEAPPEDA----LVRETLDRLILESIQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARS-------PLFHGKDNKFSHDVFVSRLAREGINE---- 148
Q G+ + ++ + R P + S + LA
Sbjct: 83 LQKGVRYGIRIEDQQLAAAVGRLASQNGLTPQQFVDQLEQSGGSYGELLANIEREMIIQR 142
Query: 149 -----------------KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ ++D + + S+ + A R Y E+ +
Sbjct: 143 VQGGNVNQRIDITTAEIEAFLDTEEGQQLIQPAYRLIHARLDVSDDIDLDAARTYVESLA 202
Query: 192 VDYIVLNNRHVPAIADPS-------NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
+ A + + + +
Sbjct: 203 ERINAGEEFNEVIGASTDPYQFKGGDLGIRPESDLPSLFAPIAPTMEQGSFAGPIENGRS 262
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA--DEAFQSLKKGKKFIQLAEE 302
I E + + + + +++ Q + E Q G+ F LA E
Sbjct: 263 FHFIYLLEKRGGTQIIPQTSVRHILIKPSEILTNEQAQELAAELRQRALDGEDFADLARE 322
Query: 303 QGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+ LG S + + + S A+ T FG+ I V + +
Sbjct: 323 YSEDIGSAQEGGDLGWASPGQMV--PVFEEQMSNAELNAITEPFQSQFGWHILQVMDRRD 380
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ + + K E+++ +++ +
Sbjct: 381 QDVTQIVN-RNRAQDYLHNQKYQEELEAWLQQIRDE 415
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 27/285 (9%), Positives = 88/285 (30%), Gaps = 8/285 (2%)
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
+I G + +I + +F + ++ + + + + A T
Sbjct: 138 MIIQRVQGGNVNQRIDITTAEIEAFLDTEEGQQLIQPAYRLIHARLDVSDDI-DLDAART 196
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVK---GKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
++ ++ R ++ + + G LF
Sbjct: 197 YVESLAERINAGEEFNEVIGASTDPYQFKGGDLGIRPESDLPSLFAPIAPTMEQGSFAGP 256
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
S+ ++ + E + + + + T E+ A +L +G++
Sbjct: 257 IENGRSFHFIYLLEKRGGTQIIPQTSVRHILIKPSEILTNEQAQELAAELRQRAL-DGED 315
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
F D+ + + + + + + + S P ++ + + +V
Sbjct: 316 FADLAREYSEDIGSAQEGGDLGWASPGQMVPVFEEQMSNAELNAITEPFQSQFGWHILQV 375
Query: 577 TNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + V + +++ YL ++ L++ + ++ + V +
Sbjct: 376 MDRRDQDVTQIVNRNRAQDYLHNQKYQEELEAWLQQIRDEAFVDI 420
>gi|311280964|ref|YP_003943195.1| SurA domain-containing protein [Enterobacter cloacae SCF1]
gi|308750159|gb|ADO49911.1| SurA domain protein [Enterobacter cloacae SCF1]
Length = 428
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 8/124 (6%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----NTLRHQILERLIMDQIILQMGQKMGVKVSDEQLDQAIASI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
N + D SRLA +G+N Y K + ++V V A N
Sbjct: 107 NNMTMDQMRSRLANDGLNYNTYRSQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQMGN 166
Query: 190 RSVD 193
++
Sbjct: 167 QNDA 170
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 29/370 (7%), Positives = 92/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + N ++ E ++Q++ ++ + + +A++ ++ +
Sbjct: 58 QQLPDDNTLRHQILERLIMDQIILQMGQKMGVKVSDEQLDQAIASIAKQNNMTMDQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + + + V + + +
Sbjct: 118 LANDGLNYNTYRSQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQMGNQNDASTELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I + E ++I D I
Sbjct: 178 HILIPLPENPTSDQVSEAEAQARSVVEQARGGADFGKLAITYSA-DQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPSIFAQALSTAKKGDIIGPIRSGVGFHVIKVNDLRGQSQTISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ + ++ +K Q+ + F K L + NQ + +
Sbjct: 297 IMSDDQARAKLEQVAADIKSGKTTFEKAAKELSQDPGSANQGGDLGWATPDIYDPSFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
V V P+ + + + ++ + +KDK L + + +
Sbjct: 357 VMKLSKGQV-SAPVHSSFGWHLIQLLDTRNVDRTDAAQKDKAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|288573832|ref|ZP_06392189.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288569573|gb|EFC91130.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 297
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 8/157 (5%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTA---EEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ A + + + ++ +A ++ + +F D K
Sbjct: 129 DDHKAAFEVPESVKASHILIQVSKDAGNDLWKKAKKEATKIRKDILAGKVSFEDAAKRDS 188
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + + F+ + + P++ Y + KVT+ K Q
Sbjct: 189 DCPSKSRGGDLGFFTEGQMVPEFEKAAFATKIGDI-SDPVKTQFGYHIIKVTDHKDASEQ 247
Query: 586 EKDKFISYLTQMMNK----DLLDSVIAYLKSQYSVTV 618
D+ + Q + + D L + LK Y V +
Sbjct: 248 PFDEVKDGIRQQLLQQKQRDTLSEYVDKLKKTYKVEI 284
>gi|196230323|ref|ZP_03129186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
flavus Ellin428]
gi|196225920|gb|EDY20427.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
flavus Ellin428]
Length = 318
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/181 (7%), Positives = 47/181 (25%), Gaps = 5/181 (2%)
Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
V + + + + + ++R + + ++ L+ + Q
Sbjct: 31 AAVVNSDIITYKQVRDLTAAKEQQAHDTLQDQALTKRIKE--VRTAAVNELIDRQLILQD 88
Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
+ G + EI + F+ L +G++ + + + +
Sbjct: 89 FKSKGYSIPEHFIDDEIE---ALIKSRFHGNRPAFLRALQAQGLSLQRFSEIQRDNIIVQ 145
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
++ G + + R + ++ ++ E +
Sbjct: 146 EMRKQAAKGATEQPTVEKVNAAYRPSAALASSQPEQMRLRVIMVHGNDEGQRKFMENIRQ 205
Query: 223 N 223
Sbjct: 206 K 206
Score = 37.9 bits (85), Expect = 5.4, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 43/157 (27%), Gaps = 6/157 (3%)
Query: 468 IKESIPARDRKLEEVL---TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
+++ A ++ V +E K + + + EG F D+ +
Sbjct: 161 VEKVNAAYRPSAALASSQPEQMRLRVIMVHGNDEGQRKFMENIRQKLTEGAEFGDLARMY 220
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV---FKVTNSKV 581
+ + F+ V + G Y++ K
Sbjct: 221 SEDSSQETYGEWGWIDRRTINETLTKAAFALKVGETSPIIEQGGNFYLLNCAAKKGAVTR 280
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + L + + ++ + L+ + + V
Sbjct: 281 TVNELGGNTPTTLVKGERQQMVSDWLQKLRRKAYIKV 317
>gi|297584461|ref|YP_003700241.1| hypothetical protein Bsel_2171 [Bacillus selenitireducens MLS10]
gi|297142918|gb|ADH99675.1| hypothetical protein Bsel_2171 [Bacillus selenitireducens MLS10]
Length = 250
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 8/169 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE-RARSVGLDKKILDNLVSGAT 98
V +V + +P ++ +Q M +Q+ + E A + + + I+D L+
Sbjct: 67 GDVVATVNGEDIPMANLEMQLQQYEMMFAQQGIDFEDEENMALLMQIQEGIVDELIQLEL 126
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
L Q + ++AD V E+ + +F D F LA +G E +
Sbjct: 127 LVQEADSQNIQADEDEVQAEMEQIRS------QFD-DDFEEVLASQGYTEDLLENEIRDS 179
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
L ++ + ++ + Y + + + + + +
Sbjct: 180 LKLNQLLSPEYIETLDFEVTDEELEEAYEQQAAQNPEIGPFEDLRDDLE 228
>gi|289548356|ref|YP_003473344.1| SurA domain protein [Thermocrinis albus DSM 14484]
gi|289181973|gb|ADC89217.1| SurA domain protein [Thermocrinis albus DSM 14484]
Length = 283
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 26/141 (18%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
V+L W L V SV + + S + +
Sbjct: 13 VLLLTALSFWSFGLTLL----DRVVASVNGEPILESEV------------------LLGK 50
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
KK+LD LV L Q+ + G+ V + + + N + +
Sbjct: 51 LFFGSNDRKKVLDKLVEDMLLYQYAQSKGMGVPDQMVDAAVNQI----LQANNLTMEGLA 106
Query: 139 SRLAREGINEKEYIDHYTKML 159
L+++G++ ++ + + +
Sbjct: 107 KELSKDGLSLEDLKNFLRREI 127
>gi|302338942|ref|YP_003804148.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
smaragdinae DSM 11293]
gi|301636127|gb|ADK81554.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
smaragdinae DSM 11293]
Length = 358
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/214 (10%), Positives = 68/214 (31%), Gaps = 14/214 (6%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSV---GRQKVPFSSFINSWKQELGMISQKIGF 73
L V+ V F + G+ + + TV +V + + ++ +K G
Sbjct: 12 LLGVVLVLFFLCGVVFPVSADLVGQTVATVTLTKTEGISSVQLDQRIA-QVAAARKKAGL 70
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL---FHGKDN 130
+ ++LD +++ + Q E G+ ++ +A+
Sbjct: 71 SADGVD------RTEVLDAMIAEVLIKQAAERSGISIPQEQIQQVVAKQKASIEQQVGRP 124
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR-PSNLLLDQAKRFYFEN 189
++ G + ++Y + + + + M ++ + +++
Sbjct: 125 LTDRQYQEVVRSQTGFSWEQYKGSIREQIMQQRYIATEKRDMFEAIQPPTEKEIQDHYDA 184
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
+ + I P+ ++ Q + ++
Sbjct: 185 HATSITNPEYVRLKQIFIPTISMNDQEKQAARER 218
>gi|253999544|ref|YP_003051607.1| EpsD family peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
SIP3-4]
gi|253986223|gb|ACT51080.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Methylovorus sp.
SIP3-4]
Length = 305
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 28/98 (28%), Gaps = 11/98 (11%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
L + + ++G + V +++ K V+
Sbjct: 7 LALGLLSVTLFGCGKSDNKPESGQVAAKVDGKEISLLQLNQVIKNV---------PNVSE 57
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ + + K+ILD L+ + D E V
Sbjct: 58 DNVDA--IRKQILDRLIDQQLILNKAYDEKFERTPEVV 93
>gi|71281900|ref|YP_271172.1| peptidyl-prolyl cis-trans isomerase SurA [Colwellia psychrerythraea
34H]
gi|122070643|sp|Q47VK0|SURA_COLP3 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|71147640|gb|AAZ28113.1| peptidyl-prolyl cis-trans isomerase SurA [Colwellia psychrerythraea
34H]
Length = 433
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 49/131 (37%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V S + + + S++A L +++D L++ + L
Sbjct: 30 DRVAAIVNTGVVLESEVNDLLVNIKQQAKKN-NQSLPSDKA----LRIQVMDKLINDSLL 84
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + +G++ ++ + +++K + F ++ EG + ++Y ++ L
Sbjct: 85 SQMGQRMGIQISDAQLDQTLNNM----AREDKLTLAQFRQQVIDEGTSYEKYRENVRIEL 140
Query: 160 SRTDVVGMFVG 170
+V V
Sbjct: 141 VSGEVSRNSVR 151
>gi|126653292|ref|ZP_01725403.1| hypothetical protein BB14905_08958 [Bacillus sp. B14905]
gi|126589966|gb|EAZ84095.1| hypothetical protein BB14905_08958 [Bacillus sp. B14905]
Length = 323
Score = 54.5 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/143 (11%), Positives = 51/143 (35%), Gaps = 25/143 (17%)
Query: 5 IRKASRTWVAKIFLVVLFVP----FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
+++ +T A + VL + F+ W + + + V ++ + ++ +
Sbjct: 21 LQRRLKTKPALSVIAVLLLGNILWFIAWAIPNKSQEIGSDEQVAAIDGDVITRQEWMIAM 80
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ G K+ L NLV+ + +++ + ++ + E+A
Sbjct: 81 EERYG---------------------KETLQNLVNESVMEKAAKTYKIKVTDQEIDLELA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAR 143
K + ++ +L +
Sbjct: 120 LMRSAQDKFDTAMQNLSAEQLRQ 142
>gi|296879875|ref|ZP_06903848.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
gi|296429164|gb|EFH15038.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
Length = 321
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/176 (13%), Positives = 46/176 (26%), Gaps = 5/176 (2%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR-----SVGLDKKIL 90
+ S TV +V K+ F + + Q G + + IL
Sbjct: 11 NSSKGETVATVEGTKISSDEFKKTIALYKDSMEQTYGKDIWDKEVEKGVKYKDKFKDLIL 70
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
D L++ + + L V GKD K+ + + E + +++
Sbjct: 71 DQLITTEVIYSQAKKDNLLPKKEDVEKSFKELKDAMGKDEKYKEQLKKLGIDDEFLRDQQ 130
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
D + + F + +I+L
Sbjct: 131 EKDLAMQNYQSNFTKKTKISDEEMKKYYDTHKDEFKKDEVEASHILLKTVDDNNKP 186
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/284 (11%), Positives = 77/284 (27%), Gaps = 3/284 (1%)
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
+ +I + K + + + +V + + L +++
Sbjct: 38 YKDSMEQTYGKDIWDKEVEKGVKYKDKFKDLILDQLITTEVIYSQAKKDNLLPKKEDVEK 97
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
+ K K + + +E+ L + + K Y
Sbjct: 98 SFKELKDAMGKDEKYKEQLKKLGIDDEFLRDQQEKDLAMQNYQSNFTKKTKISDEEMKKY 157
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWK-TVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
E +L V + K + + K + L+ K G++F + K
Sbjct: 158 YDTHKDEFKKDEVEASHILLKTVDDNNKPLSAKEKAEAKKKAEEALKEVKSGEDFAKVAK 217
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
++ + FS V +E Y + KVT+ ++
Sbjct: 218 KYSQDASASDGGKLGFFSRGQMVAEFEDAAFSMKKGEVSDL-VETQYGYHIIKVTD-RIN 275
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + K+ I L + V + +I +
Sbjct: 276 EQTSFEDAKETIKDQLLKNKYQEQIEKLTKEAKVEKDEKVINKI 319
>gi|284008562|emb|CBA75119.1| chaperone SurA protein (peptidyl-prolyl cis-trans isomerase)
[Arsenophonus nasoniae]
Length = 433
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/289 (12%), Positives = 78/289 (26%), Gaps = 11/289 (3%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
L + L + L + V V V S + + ++ G + E
Sbjct: 7 LIIGLLFTVSTTTLAAPQQLDKVTAIVNDGVVLQSDVDGMLD-IVRINARNAGQQIPDEN 65
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG-----KDNKFSH 134
A L +IL+ L+ + Q E + ++ + IA +G + S
Sbjct: 66 A----LRHQILERLIIDKIIMQIAEKMQIQIPDQAIDATIANIAAQNGLTIGQLQQRLSM 121
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
D + R + + I R + + + L QA + N S
Sbjct: 122 DGINLQNYRSDVRREMMIAEVRNNEVRRRITILPQEVDSLAAQLNSQAGQDANVNLSHIL 181
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
I L + + + + + K + + + + +EL
Sbjct: 182 IPLPENPTNTQSQLAMDTVNKIIAQLKQGADFGKLAITYSADPNALKGGQMGWSKVEELP 241
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
+ + + +I + Q ++
Sbjct: 242 TVFAQQIQHAKKGDIIGPIRSSVGFHILKLNDIQRGNMPISVTEVKARH 290
Score = 42.2 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 31/382 (8%), Positives = 90/382 (23%), Gaps = 14/382 (3%)
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
++ +N + E Q++ + + K + A + +
Sbjct: 46 MLDIVRINARNAGQQIPDENALRHQILERLIIDKIIMQIAEKMQIQIPDQAIDATIANIA 105
Query: 310 ISLGS-----FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
G + + ++L + + ++ V + I + S
Sbjct: 106 AQNGLTIGQLQQRLSMDGINLQNYRSDVRREMMIAEVRNNEVRRRITILPQEVDSLAAQL 165
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV---DFA 421
AN + + + ++ L + D
Sbjct: 166 NSQAGQDANVNLSHILIPLPENPTNTQSQLAMDTVNKIIAQLKQGADFGKLAITYSADPN 225
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
+ + + + + G ++ + E
Sbjct: 226 ALKGGQMGWSKVEELPTVFAQQIQHAKKGDIIGPIRSSVGFHILKLNDIQRGNMPISVTE 285
Query: 482 VLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-N 539
V + + E+ +K Q+ + F + K + + + N
Sbjct: 286 VKARHILIKLSPIMNNEQAHAKIQQIAQQIKTGQITFAEAAKKYSQDPGSALRGGELGWN 345
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQ 596
+ + PI + + + ++ + V +KD L
Sbjct: 346 MPNIYDPAFRDGLMRLSKGETSQ-PIHSSFGWHLIQLEDTRQVDKTDVAQKDHAYRLLFN 404
Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618
+ + L++ V +
Sbjct: 405 RKFNEEAQIWMQELRASAYVKI 426
>gi|283835117|ref|ZP_06354858.1| peptidylprolyl cis-trans isomerase SurA [Citrobacter youngae ATCC
29220]
gi|291069416|gb|EFE07525.1| peptidylprolyl cis-trans isomerase SurA [Citrobacter youngae ATCC
29220]
Length = 428
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ L Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
N + D SRLA++G+N Y K ++ ++V V
Sbjct: 107 NNMTLDQMRSRLAQDGLNYSTYRSQIRKEMTISEVRNNEVR 147
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 27/370 (7%), Positives = 86/370 (23%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q++ ++ + + +A++ +L +
Sbjct: 58 QQLPDDATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + V + + +
Sbjct: 118 LAQDGLNYSTYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQNDASTELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I + E ++I D I
Sbjct: 178 HILIPLPENPTSDQVNAAESQARSVVDEARNGSDFGKLAITYSA-DQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ T ++ K Q+ + F K + NQ + F
Sbjct: 297 IMTDQQARLKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ +KD+ L + + +
Sbjct: 357 LTKLNKGQM-SAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|170740805|ref|YP_001769460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
4-46]
gi|168195079|gb|ACA17026.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylobacterium sp.
4-46]
Length = 295
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASL-LTTNQINRMDNENKFFGYDGISQVFSGPVE 558
+ + + K G++F + + + F
Sbjct: 154 NEADAKKIAARIKGGEDFSKVAAETSKDPGSKAEGGDLGWFTKERMVPAFAEAAFKLDQG 213
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V P+ + V KV + PV D+ + + + +I L+ Q +
Sbjct: 214 KV-SDPVRTQFGWHVIKVEEKRTKPVPGFDEMKEQIDTYLTRKTQQDIITKLREQAKIE 271
>gi|157828877|ref|YP_001495119.1| hypothetical protein A1G_05640 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933604|ref|YP_001650393.1| hypothetical protein RrIowa_1217 [Rickettsia rickettsii str. Iowa]
gi|157801358|gb|ABV76611.1| hypothetical protein A1G_05640 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908691|gb|ABY72987.1| hypothetical protein RrIowa_1217 [Rickettsia rickettsii str. Iowa]
Length = 295
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 16/196 (8%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L+++ V F + S + V SV + + + F + + + V +
Sbjct: 4 LLLIITVFFTF-----NVAQASLPNIVASVNDEPITLNEF-----RARKKMIMALNNVAS 53
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
A+ L L +L+ + L Q+ D E + I NK H
Sbjct: 54 LTPAQDKQLSDLALKSLIDESLLFQYAGDR--EIPQEEIENAIKSIE----DRNKMPHGS 107
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ L +N +I L + +++ ++ SN +D A + +
Sbjct: 108 LLQYLKSRSVNPDSFISQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEISMQ 167
Query: 197 LNNRHVPAIADPSNAV 212
+ +
Sbjct: 168 VFTSKDGGNKAFTQMN 183
>gi|237729350|ref|ZP_04559831.1| peptidyl-prolyl cis-trans isomerase SurA [Citrobacter sp. 30_2]
gi|226909079|gb|EEH94997.1| peptidyl-prolyl cis-trans isomerase SurA [Citrobacter sp. 30_2]
Length = 428
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ L Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
N + D SRLA++G++ Y K ++ ++V V
Sbjct: 107 NNMTLDQMRSRLAQDGLSYSTYRSQIRKEMTISEVRNNEVR 147
Score = 42.2 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 28/370 (7%), Positives = 87/370 (23%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q++ ++ + + +A++ +L +
Sbjct: 58 QQLPDDATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + V + + +
Sbjct: 118 LAQDGLSYSTYRSQIRKEMTISEVRNNEVRRRVTILPQEVDALAQQVGNQNDASTELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I + E ++I D I
Sbjct: 178 HILIPLPENPTSDQVNAAESQARSVVDEARNGSDFGKLAITYSA-DQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDIIGPIRSGVGFHILKVNDMRGQSQSISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ T ++ K Q+ + F K + NQ + F
Sbjct: 297 IMTDQQARLKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ + +KD+ L + + +
Sbjct: 357 LTKLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V V
Sbjct: 416 EQRASAYVKV 425
>gi|99035882|ref|ZP_01314934.1| hypothetical protein Wendoof_01000229 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 413
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 11/167 (6%), Positives = 37/167 (22%), Gaps = 11/167 (6%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V V + + + + ++L L+ +
Sbjct: 54 EIVADVNGEPISNLDIEKRINFINSLFGTQS--------VNQKEAKPQVLRELIDEIIII 105
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
+ + ++ + + I LF + K + + + I+ L
Sbjct: 106 NEAQRLNIKLSNEELDNAI---MLFLTQSFKLKANEVDQYIEKHNIDLGILRKQIKCQLL 162
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ ++ + + + + E
Sbjct: 163 WSKIIEVRIVPFINISDKEVDDVKRQTEKPDYLITFQEFIIPDQKDK 209
>gi|42521061|ref|NP_966976.1| hypothetical protein WD1266 [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410802|gb|AAS14910.1| hypothetical protein WD_1266 [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 399
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 11/167 (6%), Positives = 36/167 (21%), Gaps = 11/167 (6%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V V + + + + ++L L+ +
Sbjct: 40 EIVADVNGEPISNLDIEKRINFINSLFGTQS--------VNQKEAKPQVLRELIDEIIII 91
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
+ + ++ + + I LF + K + + + I+ L
Sbjct: 92 NEAQRLNIKLSNEELDNAI---MLFLTQSFKLKANEVDQYIEKHNIDLGILRKQIKCQLL 148
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
++ + + + + E
Sbjct: 149 WGKIIEVRIVPFINISDKEVDDVKRQTEKPDYLITFQEFIIPDQKDK 195
>gi|322419887|ref|YP_004199110.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
gi|320126274|gb|ADW13834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
Length = 446
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 8/158 (5%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNFRDIGKNLG 525
+E++ +K E V K E KA + K G++F I K
Sbjct: 290 EENLDRYFKKPESVRASHILVGSDEKATPEERKKAKEKAEALLKRVKAGEDFAAIAKAES 349
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + + F+ +E+ Y + KVT + +
Sbjct: 350 SCPSASQGGDLGTFGRGQMVPAFEKAAFALKQGET-SGVVESEFGYHIIKVTEKQEAGAE 408
Query: 586 ----EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
KDK +L + + L S I LK + +
Sbjct: 409 KFENAKDKIADFLKKQKVQKELISYIDQLKKSAKIEKN 446
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 48/168 (28%), Gaps = 4/168 (2%)
Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
V+ V + + + K L ++ ++ E + LD L S L Q
Sbjct: 157 VLRVNGSVITKQALDRAVKVMLAQ--NQVKEPLSPEAQKEAEAAA--LDQLTSAELLYQE 212
Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
+ + ++ ++A++ D +F + + + + + D
Sbjct: 213 ASKLDMPELDKQIEEKVAQNRAKFKTDAEFIEALKSIDMTMQDMQDFTRRDLMINHFIEQ 272
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ V + ++ YF+ A P
Sbjct: 273 KFIAKAVITDAEAKKFYEENLDRYFKKPESVRASHILVGSDEKATPEE 320
>gi|157826081|ref|YP_001493801.1| hypothetical protein A1C_05205 [Rickettsia akari str. Hartford]
gi|157800039|gb|ABV75293.1| hypothetical protein A1C_05205 [Rickettsia akari str. Hartford]
Length = 296
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/198 (13%), Positives = 63/198 (31%), Gaps = 16/198 (8%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K+ L+++ V F + S + V SV + + + F ++ +++
Sbjct: 3 KLILIIITVFFTF-----NVAQASLPNIVASVNDEPITLNEFRA---RKKMIMALNNVDG 54
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ + L + +L+ + L Q+ D E + I NK
Sbjct: 55 LTPSQ--DKQLSDLAIKSLIDESLLFQYAGDR--EIPQEEIDNAIKSIE----DRNKMPQ 106
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ L +N +I L + +++ ++ SN +D A +
Sbjct: 107 GSLLQYLESRSVNPNSFIAQIKSELIKMNILSSLSRSVQVSNKEIDAAILSSDQKDVEIS 166
Query: 195 IVLNNRHVPAIADPSNAV 212
+ + + +
Sbjct: 167 MQVFTSQDSSKKAFTQMH 184
>gi|171464151|ref|YP_001798264.1| SurA domain [Polynucleobacter necessarius subsp. necessarius STIR1]
gi|171193689|gb|ACB44650.1| SurA domain [Polynucleobacter necessarius subsp. necessarius STIR1]
Length = 482
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 48/179 (26%), Gaps = 25/179 (13%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG---------SSTVVSVGRQKV 51
ML + + + V IF+ + F+ + + + V V
Sbjct: 1 ML-CMNRFKKIRVHAIFIGLGL--FVNASFAQDVAKTNAVSESKIRNIDGVAAVVNTGYV 57
Query: 52 PFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
+ G + + L K ILD L+ Q E G+
Sbjct: 58 TRKEIDDRIATLKKQ-----GAKLPED----GTLRKAILDRLILEKIQLQNAEQEGIRVT 108
Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ + I NK S +++ G + + Y + + V
Sbjct: 109 NKELDKYIGDIAA----KNKLSLAELKAKINAYGTSFERYRQMLRDNIMVSRYREREVE 163
Score = 38.3 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 12/149 (8%), Positives = 43/149 (28%), Gaps = 4/149 (2%)
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
P ++ + + + T ++ + + +F ++ K N
Sbjct: 323 PQNIPIIQTLSRHILLRSRAGLTDQDAERRLQGYRDQVRARTADFAELAKKYSEDGSAAN 382
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDK 589
+ + + + V P++ + + +V + + G +++
Sbjct: 383 GGDLGWMGPGDLVPEFEQAMNRLQIGEVSN-PVKIEFGWHLIQVIDRREGQLTVEKQRQF 441
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + + L +V V
Sbjct: 442 ARAAIRERKLDQAYQEWVRELHDNATVKV 470
>gi|220904184|ref|YP_002479496.1| hypothetical protein Ddes_0911 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868483|gb|ACL48818.1| hypothetical protein Ddes_0911 [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 390
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/178 (8%), Positives = 47/178 (26%), Gaps = 4/178 (2%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
L V +V + + + + + R G L
Sbjct: 42 GGCLEGRLPEGVVATVNGEPIYLRTVQALLDGRSAALDTMQRPSL-ENMKRQYG---DAL 97
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
L+ A ++Q + + + V +A +G + + + + L
Sbjct: 98 GTLIIYALVNQELRSLQIPVTESAVESAVANVRADYGGEEELARFLAEESLDGNEWRLLM 157
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + ++ + + + + ++D + + A+ +
Sbjct: 158 RDYLAMQSFEKRVLLPGIRISLDSVRGYYKRHETEFNLPETLDICLTSAVDRQAVDNF 215
>gi|311104694|ref|YP_003977547.1| PPIC-type PPIASE domain-containing protein 1 [Achromobacter
xylosoxidans A8]
gi|310759383|gb|ADP14832.1| PPIC-type PPIASE domain protein 1 [Achromobacter xylosoxidans A8]
Length = 258
Score = 54.5 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/149 (10%), Positives = 44/149 (29%), Gaps = 7/149 (4%)
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
E + + ++ V+ + AN L+ + F D+ K
Sbjct: 116 EYEKIKKEQAGKMEYKVRHILVEDEKT------ANDLLAQIKSNKSKFNDLAKKNSKDPG 169
Query: 530 TTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + + + V + P++ + + V +++ D
Sbjct: 170 SAEKGGDLGWAPPTNYVQPFAQAVTQLKKGELVDKPVQTQFGWHIIMVDDTRPVEFPPLD 229
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L +M+ + L L+ + +
Sbjct: 230 QVRPQLEEMLRQQTLADYQKELREKAKIQ 258
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V +V + +P S K + S L +++ +++
Sbjct: 20 QNVATVNGKAIPQKSLDQFVKLLVSQ-----------GATDSPQLREQVKQEMINRQIFV 68
Query: 101 QFIEDIGL 108
Q E G+
Sbjct: 69 QAAEASGI 76
>gi|83950728|ref|ZP_00959461.1| PPIC-type PPIASE domain protein [Roseovarius nubinhibens ISM]
gi|83838627|gb|EAP77923.1| PPIC-type PPIASE domain protein [Roseovarius nubinhibens ISM]
Length = 286
Score = 54.1 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/157 (11%), Positives = 49/157 (31%), Gaps = 2/157 (1%)
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
V + + + + + + + ++ E +A L+ E G +F +
Sbjct: 112 NRVANVALTDEALQKVYEDTYMTAEAQTEFNAAHILVETEEEAKALIEEL-NGGADFSAL 170
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
K N V + P++ + V K+ +++
Sbjct: 171 AKEKSTGPSGPNGGELDWFAGDMMVEPFAEAVAKMEKGAI-SEPVQTQFGWHVIKLNDTR 229
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
E ++ + L +++ + +D+ + L V
Sbjct: 230 TKERPELEEVRAELEEVVRQQAIDAYMTDLSEGAKVD 266
>gi|85058404|ref|YP_454106.1| peptidyl-prolyl cis-trans isomerase SurA [Sodalis glossinidius str.
'morsitans']
gi|121956483|sp|Q2NVX4|SURA_SODGM RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|84778924|dbj|BAE73701.1| survival protein SurA precursor [Sodalis glossinidius str.
'morsitans']
Length = 431
Score = 54.1 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 9/123 (7%)
Query: 48 RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
V S N + N + L ++ILD L+ + Q +
Sbjct: 34 NGIVLESEVDNMLSTVKHGAQE-----ANQQLPDDTTLRRQILDRLIMDNIILQLAQRTN 88
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ ++ I N S D SRL +GI+ Y K + +V
Sbjct: 89 ITISDEQLDQAIGNIAA----QNHMSLDQLRSRLPYDGIDYNTYRTQIRKEMLIAEVRNG 144
Query: 168 FVG 170
V
Sbjct: 145 EVR 147
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 22/240 (9%), Positives = 64/240 (26%), Gaps = 9/240 (3%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
++ + EE + ++I D + L
Sbjct: 189 QDQLDKAEELATSIVEQSKSGADFGKLAITYSA-DAQALKGGQMGWGKLEELPSLFAARL 247
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESI--PARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
S + G + +++ + + E + V T ++ +K
Sbjct: 248 QGAQKGSIVGPIRSGVG-FHILKVNDIRGGDQKVAVTEVHARHIMLRTSVVMTDQQARAK 306
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVK 561
+ + +F K L + NQ + + F + + +
Sbjct: 307 LEDIAAQIKSGRISFAAAAKQLSEDPGSANQGGDLGWSSADAFDPAFRNALMHLKKGEIS 366
Query: 562 CFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P+ + + + ++ + +KD+ L + + + ++ V +
Sbjct: 367 T-PVHSSFGWHLIQLIDTRQVDRTDAAQKDRAYRLLFNRKFAEEAQTWMQEQRASAYVKI 425
>gi|320539610|ref|ZP_08039274.1| putative peptidyl-prolyl cis-trans isomerase (PPIase) [Serratia
symbiotica str. Tucson]
gi|320030222|gb|EFW12237.1| putative peptidyl-prolyl cis-trans isomerase (PPIase) [Serratia
symbiotica str. Tucson]
Length = 435
Score = 54.1 bits (127), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/376 (10%), Positives = 99/376 (26%), Gaps = 57/376 (15%)
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+Q+ G + + L +I++ L+ Q + +G+ + + IA +
Sbjct: 57 AQQDGQPLPDDNL----LRHQIIERLIMDNIQLQMAQKMGITVSNADLDNSIANIAAQNK 112
Query: 128 KDNK-----FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
S++ R I ++ I R V + + + Q
Sbjct: 113 MSLNQLRNRLSYEGLNYNTYRLQIRKEMLIAEVRNNAVRRRVTILPQEVEALAKQVGAQN 172
Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
N S + L D + A+ + + + + +
Sbjct: 173 VSDTEMNISHILLPLPENPSQQQMDSAEALARKLMGELHNGADFGKLAITYSADPQALKG 232
Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEI-----------------------------RTVE 273
E+ + ++ I
Sbjct: 233 GNMGWGKLQEIPTLFAEHLVNAKKGIIVGPIRSGVGFHILKVNDIRGASQSVSVTEVHAR 292
Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQ--------------LAEEQGKSLSDISLGSFSKEY 319
++ + K L+++ G +L LG S
Sbjct: 293 HILLKPSVVMTDDQARTKLASIAQDIKSGRTKFADEAKHLSQDPGSALQGGDLGWASP-D 351
Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI-- 377
I D + D++ L K G+ + +H +FG+ + + + + + +
Sbjct: 352 IYDPAFRDALLKLNK-GEISAPVHSAFGWHLIQLLDTRQVDKTDAAQKNRAYRMLFNRKF 410
Query: 378 -TKASEKVKEDYKRLE 392
+A ++E +
Sbjct: 411 AEEAQTWMQELRAQAY 426
Score = 42.2 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 19/198 (9%), Positives = 57/198 (28%), Gaps = 7/198 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARDRKLEEVLTD 485
G + LF + + +++ + ++ + EV
Sbjct: 233 GNMGWGKLQEIPTLFAEHLVNAKKGIIVGPIRSGVGFHILKVNDIRGASQSVSVTEVHAR 292
Query: 486 -VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
+ V T ++ +K + + F D K+L + Q +
Sbjct: 293 HILLKPSVVMTDDQARTKLASIAQDIKSGRTKFADEAKHLSQDPGSALQGGDLGWASPDI 352
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + + P+ + + + ++ + +K++ L
Sbjct: 353 YDPAFRDALLKLNKGEI-SAPVHSAFGWHLIQLLDTRQVDKTDAAQKNRAYRMLFNRKFA 411
Query: 601 DLLDSVIAYLKSQYSVTV 618
+ + + L++Q V +
Sbjct: 412 EEAQTWMQELRAQAYVKI 429
>gi|332305313|ref|YP_004433164.1| SurA domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332172642|gb|AEE21896.1| SurA domain protein [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 431
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/204 (13%), Positives = 63/204 (30%), Gaps = 12/204 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K+ +V + S + V V + V S
Sbjct: 1 MKLTVVTFAL-LAFISFSTFAKQTRLDNVAVIVDQGVVLESQIKELVSTVKRNAITN-NQ 58
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ S+R L + ++ L+ + Q + +G++ ++ I G
Sbjct: 59 TLPSDRV----LRTQAIERLIVDSLQSQMADRMGIQISDPQLDQTIDNIAREDGTTV--- 111
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG--MRPSNLLLDQAKRFYFENRS 191
+ LA EG++ + Y + K L +V V + + K +
Sbjct: 112 -EQLRQSLASEGVSFEVYREQVRKELISGEVRRANVRRRIYITPQEISNLVKLIDEQGGQ 170
Query: 192 VDYIVLNNRHVPAIADPSNAVLTQ 215
L + + +P++A +++
Sbjct: 171 QAEYHLGHILIGFPPEPTDADVSK 194
Score = 37.9 bits (85), Expect = 5.3, Method: Composition-based stats.
Identities = 30/361 (8%), Positives = 94/361 (26%), Gaps = 23/361 (6%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
E+L+ + + ++ + + ++ + + +
Sbjct: 72 ERLIVDSLQSQMADRMGIQISDPQLDQTIDNIAREDGTTVEQLRQSLASEGVSFEVYREQ 131
Query: 333 AKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
+K + + + +++ P + ++ + Q +
Sbjct: 132 VRKELISGEVRRANVRRRIYIT---PQEISNLVKLIDEQGGQQAEYHLGHILIGFPPEPT 188
Query: 393 EFLALGTSMDE-------ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + E + I L
Sbjct: 189 DADVSKAKDTAEKVLELLNNGSEFAKIATASSSGSKALEGGDLGWMNINSMPTLFAEAVQ 248
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ G + + I R + EV + + KA +
Sbjct: 249 GTSKDDLIGPIRSGAG----FHVLKIIDIRGIEKVEVAELKSRHILIKPSVILSDEKAEK 304
Query: 506 LVLEYSK----EGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMV 560
+++E+ K +F ++ K A + + + + + + V +
Sbjct: 305 MLIEFRKQLLAGEADFAELAKEHSADPGSALRGGDLGWADPNVYVPAFRDTLQKLEVGEI 364
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P+ + + + ++ + +V EK DK L Q + ++ + ++ V
Sbjct: 365 SQ-PVRSTHGWHLMQLMDKRVQDATEKRKEDKAYQLLFQRKFAEETEAWLKEMRDSAYVE 423
Query: 618 V 618
+
Sbjct: 424 L 424
>gi|255020025|ref|ZP_05292098.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
ATCC 51756]
gi|254970554|gb|EET28043.1| Peptidyl-prolyl cis-trans isomerase ppiD [Acidithiobacillus caldus
ATCC 51756]
Length = 258
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/161 (10%), Positives = 48/161 (29%), Gaps = 9/161 (5%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAE--------EVSSKANQLVLEYSKEGKNF 517
+ + I E+ K + E + ++A++++ E K GK F
Sbjct: 97 AAVDQYIKEHPVPESEIQAAYNKFVAAMGKKEYEVRHILVKTKAEADKILAEL-KAGKKF 155
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
+ + + + ++ P++ Y + +V
Sbjct: 156 STLAEKYSIDKASAAHGGELGWIVPGMVVPPFAEAIEKAPIDKPVGPVQTQFGYHIIEVQ 215
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+K + + ++ ++ L+SQ + +
Sbjct: 216 ATKPLTPPPLSAMKDRIKAQLQQEEAAKFVSDLRSQAKIDI 256
Score = 37.9 bits (85), Expect = 5.5, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 26/95 (27%), Gaps = 29/95 (30%)
Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE 104
+V Q + S ++ E A+ ++++ NLV+ L Q+
Sbjct: 26 TVNGQAIDNSQVQAILS-------------MSPELAKEPNAREQVVQNLVNMEVLSQYAM 72
Query: 105 DIGLEAD----------------HGRVWGEIARSP 123
L+ V I P
Sbjct: 73 KHNLDQSADVKERLALAKRQILADAAVDQYIKEHP 107
>gi|157964821|ref|YP_001499645.1| hypothetical protein RMA_1057 [Rickettsia massiliae MTU5]
gi|157844597|gb|ABV85098.1| hypothetical protein RMA_1057 [Rickettsia massiliae MTU5]
Length = 303
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 63/196 (32%), Gaps = 16/196 (8%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L+++ V F + S + V SV + + + F + + + V +
Sbjct: 12 LLLIITVFFTF-----NVAQASLPNIVASVNDEPITLNEF-----RARKKMIMALNNVES 61
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
A+ L L +L+ + L Q+ D E + I NK H
Sbjct: 62 LTPAQDKQLSDLALKSLIDESLLFQYAGDR--EIPQEEIDNAIKSIE----DRNKMPHGS 115
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ L +N +I L + +++ + ++ SN +D A + +
Sbjct: 116 LLQYLKSRSVNPDSFISQIKSELIKMNILSILSRSVQVSNKEIDVAILSSDQKDVEISMQ 175
Query: 197 LNNRHVPAIADPSNAV 212
+ + +
Sbjct: 176 VFTSKDGSNKAFTQMN 191
>gi|317493318|ref|ZP_07951740.1| SurA domain-containing protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918711|gb|EFV40048.1| SurA domain-containing protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 432
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 48 RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
V S + + G + + L +IL+ L+ Q + +G
Sbjct: 34 NGVVLESDVDGLMQSVKLNARE-AGQQLPDD----ATLRHQILERLIMDNIQLQMAKKMG 88
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
++ + V I + N S D SRLA +GIN K Y D K + ++V
Sbjct: 89 IDINDADVDRAIGNI----AQQNHMSLDQMRSRLAADGINYKTYRDQIRKEMLISEVRNN 144
Query: 168 FVG 170
V
Sbjct: 145 EVR 147
Score = 37.9 bits (85), Expect = 4.8, Method: Composition-based stats.
Identities = 17/243 (6%), Positives = 63/243 (25%), Gaps = 8/243 (3%)
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
+ ++ ++ L +++ + K+ D I L
Sbjct: 186 NPSQQQVDDAEQQARQLVDQLNKGADFGKMAV--SYSADSQALKGGQMGWGKIQELPSLF 243
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEV 499
+ G ++ + + EV + V T ++
Sbjct: 244 AAALQTAKKGDIIGPIRSGVGFHILKVNDLRGGQGNVSVTEVHARHILLRPSPVMTDDQA 303
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNENKFFGYDGISQVFSGPVE 558
+K ++ + + F + + + + + + +
Sbjct: 304 RAKLQEIAQQIKSKQITFDEAARAVSQDPGSALKGGDLGWAVPTMYDPAFRDALMKLQKG 363
Query: 559 MVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ P+ + + + ++ + +KD+ L + + + ++
Sbjct: 364 EL-SAPVHSSFGWHLIQLLDTRQVDRTDDAQKDRAYRMLFNRKFAEEAQTWMQEERASAY 422
Query: 616 VTV 618
V +
Sbjct: 423 VKI 425
>gi|161524535|ref|YP_001579547.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
multivorans ATCC 17616]
gi|189350709|ref|YP_001946337.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia multivorans
ATCC 17616]
gi|160341964|gb|ABX15050.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
multivorans ATCC 17616]
gi|189334731|dbj|BAG43801.1| peptidyl-prolyl cis-trans isomerase C [Burkholderia multivorans
ATCC 17616]
Length = 260
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 55/181 (30%), Gaps = 11/181 (6%)
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-------- 498
+ P K + I+ + EV KT E
Sbjct: 81 NRPDVKAQVAVAQQTVVLRAMIENFLKKNQPTDAEVKARYDDLVKTAGGNREYHLHHILV 140
Query: 499 -VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGP 556
+A +L+ + K G F D+ K + +D ++ K + + +
Sbjct: 141 DSEQQAKELIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQ 199
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ P++ + + +V + + + + + Q + + L + L+ Q +
Sbjct: 200 KGQMTDEPVKTQFGWHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQAKI 259
Query: 617 T 617
Sbjct: 260 Q 260
Score = 44.5 bits (102), Expect = 0.058, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + ++ E++A Y+ + + ++ ++++A E +K G KF
Sbjct: 101 MIENFLKKNQPTDAEVKARYDDLVKTAGGNREYHLHHILVDSEQQAKELIAKIKGGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I V
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDEPVKTQFGWHIIRVD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+I+ F +VK IA Q+ K + ++
Sbjct: 221 DIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQ 256
>gi|260589950|ref|ZP_05855863.1| hypothetical protein BLAHAN_07060 [Blautia hansenii DSM 20583]
gi|260539757|gb|EEX20326.1| hypothetical protein BLAHAN_07060 [Blautia hansenii DSM 20583]
Length = 365
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 12/130 (9%), Positives = 40/130 (30%), Gaps = 4/130 (3%)
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ + S ++L+ + + K + +L + E+ +
Sbjct: 204 KNEKKAQAQSVLDKLLASDDPAMADVDTLAKEVDENLSALD--TTFGAEDTLLDEKLLEA 261
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
+ V +E +Y V ++ + + + ++ ++ K
Sbjct: 262 AKTLQDGQVYESVVEGENAYYVVRMDQVLDREATDAE--KEQIVNERKQEAYQKLLDEWK 319
Query: 612 SQYSVTVHDN 621
+ +TV++
Sbjct: 320 EKAEITVNEK 329
>gi|220935188|ref|YP_002514087.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
HL-EbGR7]
gi|219996498|gb|ACL73100.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
HL-EbGR7]
Length = 270
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/217 (11%), Positives = 70/217 (32%), Gaps = 12/217 (5%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV---FGKDDPLSKDHTVALPDGSYMWVQIK 469
++L + G+++ EV +LL + G D V + M +
Sbjct: 54 LNLQRMTRPGENLLPDEVLDEMINMELLRQAALQQGLDRDPDIQRQVERARTNLMVGALI 113
Query: 470 ESIPARDRKLEEVLTDVKKDW----KTVKTAEEV----SSKANQLVLEYSKEGKNFRDIG 521
+ +D E++ + + +T A + + A +++ + G +F+++
Sbjct: 114 DQRLNQDYTEEQLRAEYDRQIQAIDRTEYKARHILLDSEADAREVIAAL-EAGGDFQELA 172
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ + V + P++ + V + +++
Sbjct: 173 REHSTGPSGPMGGDLGWFTADAMVPAFSEAVQAMEKGSYSNEPVQTEFGWHVILLEDTRR 232
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + Q+++ L I L++ + V
Sbjct: 233 SEPPPFEAVRDRVAQILDNRALQDYIGDLRTAAKIEV 269
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 16/154 (10%)
Query: 15 KIFLVVLFVPFL-IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
+ +L V + G +A + V V + + F + + + G
Sbjct: 8 ILVTGLLTVTLITGCGRGEAPQAEISGEAVAMVNGVAISEADFQDFLNLQR---MTRPGE 64
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG---RVWGEIARSPLFHGKDN 130
+ + +LD +++ L Q GL+ D +V + D
Sbjct: 65 NLLPDE---------VLDEMINMELLRQAALQQGLDRDPDIQRQVERARTNLMVGALIDQ 115
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+ + D +L E + + ID +
Sbjct: 116 RLNQDYTEEQLRAEYDRQIQAIDRTEYKARHILL 149
>gi|189182933|ref|YP_001936718.1| hypothetical protein OTT_0026 [Orientia tsutsugamushi str. Ikeda]
gi|189179704|dbj|BAG39484.1| hypothetical protein OTT_0026 [Orientia tsutsugamushi str. Ikeda]
Length = 291
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 14/148 (9%), Positives = 43/148 (29%), Gaps = 11/148 (7%)
Query: 22 FVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ F + + ++ +++ + V V + K + + ++
Sbjct: 4 ILAFFLTIIVVCNSSGALAATKIVAIVDGTPITSHQLDKFRKVITFLHRSQSLTSISDSE 63
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
++ L+ L+ + G+EA + I K F
Sbjct: 64 LTTI-----ALEALIDRVIFLNEAKRYGIEASQDEINQFI----AMEEKAINLPDQYFKY 114
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ ++ ++ Y + + + M
Sbjct: 115 AIKESEVSYDAFLMFYEVRVIISKINRM 142
>gi|221215070|ref|ZP_03588037.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
multivorans CGD1]
gi|221165006|gb|EED97485.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
multivorans CGD1]
Length = 260
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 56/181 (30%), Gaps = 11/181 (6%)
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-------- 498
+ P K + I+ + EV + KT E
Sbjct: 81 NRPDVKAQVAVAQQTVVLRAMIENFLKKNQPTDAEVKARYDELVKTAGGNREYHLHHILV 140
Query: 499 -VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGP 556
+A +L+ + K G F D+ K + +D ++ K + + +
Sbjct: 141 DSEQQAKELIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQ 199
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ P++ + + +V + + + + + Q + + L + L+ Q +
Sbjct: 200 KGQMTDEPVKTQFGWHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQAKI 259
Query: 617 T 617
Sbjct: 260 Q 260
Score = 44.5 bits (102), Expect = 0.050, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + ++ E++A Y++ + + ++ ++++A E +K G KF
Sbjct: 101 MIENFLKKNQPTDAEVKARYDELVKTAGGNREYHLHHILVDSEQQAKELIAKIKGGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I V
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDEPVKTQFGWHIIRVD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+I+ F +VK IA Q+ K + ++
Sbjct: 221 DIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQ 256
>gi|319781324|ref|YP_004140800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317167212|gb|ADV10750.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 305
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/166 (10%), Positives = 54/166 (32%), Gaps = 2/166 (1%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ ++ ++ E T + + +A ++ + G +F+ +
Sbjct: 135 VVDKVTDAEVRARYDQEIANTPPTNELHARHILVKTKEEAEAIIKQLD-GGADFQKLANE 193
Query: 524 LGASLL-TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
+ T+ + + + V P++ + V K+ + +
Sbjct: 194 HTSDPSGKTSGGDLGWFGPGQMVPEFDKAASALEVGKYTEQPVQTQFGWHVIKLEDKRTK 253
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
D Q + +D +++ L++ V + D +++ +D
Sbjct: 254 QPPAFDDVKDQAKQAVIRDKYFALVKSLRAGAKVEIPDANLKKAVD 299
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 62/175 (35%), Gaps = 5/175 (2%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+K D R + + + ++ EK ++++ E++A Y++ ++
Sbjct: 109 DKDPDFQRRMAFLQQRALHGEMVEKGVVDKVTDAEVRARYDQEIANTPPTNELHARHILV 168
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLA 333
++EA+ + L G F +LA E S LG F + + +L
Sbjct: 169 KTKEEAEAIIKQLDGGADFQKLANEHTSDPSGKTSGGDLGWFGPGQMV-PEFDKAASALE 227
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
+ FG+ + + + + +F +VK + K VK
Sbjct: 228 VGKYTEQPVQTQFGWHVIKLEDKRTKQPPAFDDVKDQAKQAVIRDKYFALVKSLR 282
>gi|110801593|ref|YP_697584.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Clostridium perfringens SM101]
gi|110682094|gb|ABG85464.1| PPIC-type PPIASE domain protein [Clostridium perfringens SM101]
Length = 248
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 44/157 (28%), Gaps = 5/157 (3%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V + + + + + A ++ E + F D
Sbjct: 92 VTVTDDEAKDFYEEHKENFVELETVTAKHILVASEEDAKKVEEEIASGSITFEDAANKYS 151
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-- 583
+ N + F+ + V P++ Y + KV +
Sbjct: 152 SCPSKEQGGNLGSFSKGMMVPEFEEAAFNLELG-VVSAPVKTQFGYHLIKVEDKTEAKTK 210
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K++ ++ L Q + +I L+ +Y V +
Sbjct: 211 AFEDVKEQVVNMLIQERQQKKYLELIKELREKYGVKL 247
>gi|169825702|ref|YP_001695860.1| hypothetical protein Bsph_0092 [Lysinibacillus sphaericus C3-41]
gi|168990190|gb|ACA37730.1| Hypothetical yacD protein [Lysinibacillus sphaericus C3-41]
Length = 323
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/143 (11%), Positives = 50/143 (34%), Gaps = 25/143 (17%)
Query: 5 IRKASRTWVAKIFLVVLFVP----FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
+++ +T A + VL + F+ W + + + V ++ + ++ +
Sbjct: 21 LQRRLKTKPALAVIAVLLLGNILWFIGWVIPNKGQEIGSDEQVAAIDGDVITRQEWMIAM 80
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ G K+ L +LV+ +++ + ++ + E+A
Sbjct: 81 EERYG---------------------KETLQSLVNETVMEKAAKTYKIKVTDQEIDLELA 119
Query: 121 RSPLFHGKDNKFSHDVFVSRLAR 143
K + ++ +L +
Sbjct: 120 LMRSAQDKFDTAMQNLTAEQLRQ 142
>gi|91776379|ref|YP_546135.1| hypothetical protein Mfla_2027 [Methylobacillus flagellatus KT]
gi|91710366|gb|ABE50294.1| conserved hypothetical protein [Methylobacillus flagellatus KT]
Length = 314
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ + K LV L + + G D S ++ V +++ +
Sbjct: 13 SKMTKGALVALMISIGLSGCGDKSNETKASQSLARVNGKEITVHQLNEELARA------- 65
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
N + A+ K+IL +L+ L+Q ++ D V I R+
Sbjct: 66 -----NVQPAQKEAATKQILQSLIDRQLLEQAALKAKVDRDPN-VMQAIERAKS 113
>gi|83312815|ref|YP_423079.1| parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
magneticum AMB-1]
gi|82947656|dbj|BAE52520.1| Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
magneticum AMB-1]
Length = 421
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 13/127 (10%), Positives = 32/127 (25%), Gaps = 10/127 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + K + + + ++L +V
Sbjct: 28 DRIAAVVNDEIISIRDLDARLKLAITV------SGLPDNIESRRRAVPQVLRKMVDERVQ 81
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + + A V +A N+ + LA+ G++ D +
Sbjct: 82 AQEAARLRVAAGADEVARGVANVEN----QNRMPPGSLLPSLAKAGVDPDAVKDQIKADI 137
Query: 160 SRTDVVG 166
++
Sbjct: 138 IWVKLIM 144
>gi|331084269|ref|ZP_08333374.1| hypothetical protein HMPREF0992_02298 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330401804|gb|EGG81381.1| hypothetical protein HMPREF0992_02298 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 369
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 12/130 (9%), Positives = 40/130 (30%), Gaps = 4/130 (3%)
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ + S ++L+ + + K + +L + E+ +
Sbjct: 208 KNEKKAQAQSVLDKLLASDDPAMADVDTLAKEVDENLSALD--TTFGAEDTLLDEKLLEA 265
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
+ V +E +Y V ++ + + + ++ ++ K
Sbjct: 266 AKTLQDGQVYESVVEGENAYYVVRMDQVLDREATDAE--KEQIVNERKQEAYQKLLDEWK 323
Query: 612 SQYSVTVHDN 621
+ +TV++
Sbjct: 324 EKAEITVNEK 333
>gi|259907387|ref|YP_002647743.1| peptidyl-prolyl cis-trans isomerase SurA [Erwinia pyrifoliae
Ep1/96]
gi|224963009|emb|CAX54492.1| Peptidyl-prolyl cis-trans isomerase, survival protein [Erwinia
pyrifoliae Ep1/96]
gi|283477220|emb|CAY73127.1| survival protein SurA precursor [Erwinia pyrifoliae DSM 12163]
gi|310765112|gb|ADP10062.1| peptidyl-prolyl cis-trans isomerase SurA [Erwinia sp. Ejp617]
Length = 431
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ LV L Q + GL+ ++ IA + NK S D SR
Sbjct: 62 DDKTLRHQILERLVMDNILLQKAKQAGLQISDAQLDQAIANI----AQQNKISVDQLRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA +G+N Y + K ++ +V V
Sbjct: 118 LAYDGMNYASYREQIRKEMATAEVRNNEVR 147
>gi|254509382|ref|ZP_05121467.1| chaperone SurA [Vibrio parahaemolyticus 16]
gi|219547690|gb|EED24730.1| chaperone SurA [Vibrio parahaemolyticus 16]
Length = 431
Score = 54.1 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 9/168 (5%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V V + S S K + G + + L +++ + L+ Q
Sbjct: 32 VIVNSGVILESDIDTSIKTLKANARKN-GQGLPEQEV----LRQQVTEKLIIDTLQQQEA 86
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
E IG+ D R+ I K+N + + +A EG+ E+ + K ++ T+
Sbjct: 87 ERIGVRIDDNRLNQAIEEI----AKNNNQTIEQLSDSIAAEGLEYSEFREQVRKEIAATE 142
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
V + + H+ + +
Sbjct: 143 ARNALVRRRINILPAEVDNLANILAQETNATVQYKISHIQLRVNDGDD 190
Score = 39.8 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 29/275 (10%), Positives = 81/275 (29%), Gaps = 9/275 (3%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
NI P+ + + N K S + + D +++ ++
Sbjct: 150 RRINILPAEVDNLANILAQETNATVQYKISHIQLRVNDGDDASALEKQAKDIVAKLKEGA 209
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
++ + +++ + +F + L +V P S + I +
Sbjct: 210 DFATMAYTYSKGPKALQGGDWGWMRKEEMPTIFADNINLENKGSVIGPFRSGVGFHILKI 269
Query: 472 IPARDRKLEEVLT----DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + V + + + E V + N+++ F ++ +
Sbjct: 270 DDVKGLETVAVTEVNARHILIRPTVILSDEGVQKELNEIIERIQAGEATFGELARQYSQD 329
Query: 528 LLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGP 583
+ Q + + + QV + P + P + + + +V +
Sbjct: 330 PGSAAQNGELGYQTSDLYVPEFKHQVDTLPEGQI-SEPFKTVHGWHIVEVLDRRQVDRTD 388
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K+K L + + + L++ V +
Sbjct: 389 SAMKNKAYRILFNRKFNEEASAWLQELRASAFVEI 423
>gi|296450315|ref|ZP_06892075.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
gi|296878727|ref|ZP_06902731.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
gi|296260876|gb|EFH07711.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
gi|296430301|gb|EFH16144.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
Length = 380
Score = 54.1 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 4/124 (3%)
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
E+ +A +++ + ++ G++F + K + + F+
Sbjct: 251 KKAELKKEAEEIL-KKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVESFEKAAFA 309
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
V +E+ Y + K T+ K P +E S L + + +I LK +Y
Sbjct: 310 LKKGEVSNKLVESDYGYHIIKKTDEKYQPFEE---IKSDLVSSLTSEKQSLLIQNLKEKY 366
Query: 615 SVTV 618
+V +
Sbjct: 367 NVKI 370
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 16/172 (9%), Positives = 46/172 (26%), Gaps = 22/172 (12%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSV-------------SGSSTVVSVGRQKVPFS 54
K + ++ V + G +F + S V ++G +K+
Sbjct: 44 KLNNKTLKAIVAIVAVGAICLG-GGYVFGKEAGRKLPATSKHYNSSEVVATIGDKKITGE 102
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ + + +++ +++ L + + +
Sbjct: 103 MLRKRMEPLF-----YLNAKTTMTDDEIRSYESNMIETMITSDILSSEAAKEKISITNDQ 157
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+ + + + F L + + EK D K L + +
Sbjct: 158 LDAQYNNLMSSIESAMGMTKEEF---LKQFDLTEKYIKDDMKKELVASKYLN 206
>gi|188532873|ref|YP_001906670.1| peptidyl-prolyl cis-trans isomerase SurA [Erwinia tasmaniensis
Et1/99]
gi|188027915|emb|CAO95772.1| Peptidyl-prolyl cis-trans isomerase, survival protein [Erwinia
tasmaniensis Et1/99]
Length = 431
Score = 54.1 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ LV L Q + GL+ ++ IA + NK S D SR
Sbjct: 62 DDKTLRHQILERLVMDNILLQKAKQAGLQVSDAQLDQAIANI----AQQNKLSIDQLRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA +G+N Y + + ++ ++V V
Sbjct: 118 LAYDGMNYATYREQIRQEMATSEVRNSEVR 147
Score = 41.0 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 27/272 (9%), Positives = 69/272 (25%), Gaps = 6/272 (2%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ S ++ + SE + +E LA + + S +
Sbjct: 155 QEVDSLAEQMASQNSAGTELNISHILLPLSENPTQQQVDDQEKLARQLTSEARSGADFAK 214
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D + L + + G ++
Sbjct: 215 LAIANSADAQALKGGNMGWGRLQELPSLFAQALVTAKKGDIIGPIRSGVGFHILKVNDMR 274
Query: 472 IPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
+ + EV + + T ++ K Q+ E F D K L +
Sbjct: 275 GDNQSISVTEVHARHILLKPSPIMTDDQARQKLQQVAAEIKSGKLTFSDAAKQLSQDPGS 334
Query: 531 TNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQE 586
NQ + + + F + + P+ + + + ++ +
Sbjct: 335 ANQGGDLGWSSAEVFDPAFRDALLRLKKGQI-SDPVHSSFGWHLIELMDTRKVDKTDAAK 393
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K++ L + + + ++ V +
Sbjct: 394 KERAYRLLFNRKFAEEAQTWMQEERAAAYVKI 425
>gi|283780046|ref|YP_003370801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
DSM 6068]
gi|283438499|gb|ADB16941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
DSM 6068]
Length = 724
Score = 54.1 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/570 (6%), Positives = 128/570 (22%), Gaps = 46/570 (8%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +++ + + ++L+++++ +
Sbjct: 143 QVMAVVNGEQITRTDLGRECMRR---------------------FGNEVLESMLNRQLIL 181
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
+ V E+ R D ++ L E ++
Sbjct: 182 DACAAQNIVITEQDVDDEVDRIAN----KFGLPRDRWLQLLREERGFSEQEYRTTVVWQM 237
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
+ L + + I ++++ + A + F
Sbjct: 238 IALRRLVADKIQVTPEELKMAFESEFGPKVRARMIAVSSKEKADQVLAAAAAKPESFGDL 297
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
Y + + +L +
Sbjct: 298 AKQYCEDPAVASARGVIPPIRMHTGDPTLE--------------QIAFSLKPGELSSVIK 343
Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
+ + LA + + + + + +
Sbjct: 344 VANLYYILLCDEQVPRMVLAPQHIPAQQERLTDKLRENKLRVSAAQFFENMRKSAQVVNV 403
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
+ + V+ VS ++ ++ ++ + ++ +
Sbjct: 404 FEDPAKQKAMPGVAATINGRPVSMLQLSEECISRNGESVLEGEINRKLLEQQLAKRKLVI 463
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ E + A + + EQ D + +
Sbjct: 464 TQQDIDAEVARAAASFGFVKADQTPDVERWMKTVIDEQGATPDLYIRDAVWPSVALKKLV 523
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
G+ + V ++ + + + + A++V A + F ++
Sbjct: 524 GNRVEVTEEDLQKGYESNYGPRVEVLACVLTDQRQAQKVWEMA-----RANPTNDFFAEL 578
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGI-SQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+ + + ++ ++ G I + F + I G Y++ +
Sbjct: 579 ARQYSVEPSSRSNGGQVPPIRRYGGGAAIEEEAFKLKAGELSGL-IAVGDQYIILRCLGR 637
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ L + + L ++
Sbjct: 638 TSPVKADFATVKDELVADIQEKKLRILMNS 667
>gi|171321062|ref|ZP_02910045.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria MEX-5]
gi|171093676|gb|EDT38826.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria MEX-5]
Length = 260
Score = 54.1 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + + + + D+ + + Q + + L + L+ Q +
Sbjct: 202 QMTDTPVKTQFGWHIIRADDIRDVAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260
Score = 44.1 bits (101), Expect = 0.077, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + ++ E++A Y++ + + ++ ++++A + +K G KF
Sbjct: 101 MIESFLKKNQPTDAEVKARYDELVKGAGGNREYHLHHILVDSEQQAKDLIAKIKGGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRAD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+I+ F +VK IA Q+ K + ++
Sbjct: 221 DIRDVAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQ 256
Score = 37.1 bits (83), Expect = 8.7, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + + S L + + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADAMVAQLVQQ-----------GQTDSPQLQQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIREGI 79
>gi|218547503|ref|YP_002381294.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia fergusonii
ATCC 35469]
gi|218355044|emb|CAQ87650.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia
fergusonii ATCC 35469]
gi|324112544|gb|EGC06521.1| ppic-type ppiase domain-containing protein [Escherichia fergusonii
B253]
Length = 428
Score = 54.1 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
N Q + + + + G + + L +IL+ L+ L Q + +G++ ++
Sbjct: 43 NGLLQSVKLNAAQAGQQLPDD----ATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQ 98
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 99 AIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVR 147
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 91/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQAGQQLPDDATLRHQILERLIMDQILLQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRISILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D
Sbjct: 174 LNLSHILIPLPENPSSDQVNEAESQARAIVDQARNGADFGKLAISYSADQQALKGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDVVGPIRSGVGFHILKVNDLRGGSQNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|162455542|ref|YP_001617909.1| hypothetical protein sce7260 [Sorangium cellulosum 'So ce 56']
gi|161166124|emb|CAN97429.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
Length = 358
Score = 54.1 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 13/95 (13%)
Query: 31 SDALFS---VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
D +F + + VG + + F + ++ + R ++ +
Sbjct: 34 GDPVFGLTAEQSARVLAKVGDRVITLGDFGRTLERM---------DQFDRLRYQTKERRR 84
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
++L L+ L GL+ V I +
Sbjct: 85 ELLSELIDAELLALEARRRGLD-KDPAVEDTIRQI 118
Score = 47.9 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 34/261 (13%), Positives = 71/261 (27%), Gaps = 22/261 (8%)
Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK-EQLLFRVFGKD 447
+R+++F L E R ID L+ + + A+ Q+L
Sbjct: 67 ERMDQFDRLRYQTKERRRELLSELIDAELLALEARRRGLDKDPAVEDTIRQILREAMIAR 126
Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD-WKTVKTAEEVSSKANQ- 505
+P + + + V V D K +E +
Sbjct: 127 ARKGLPAPADIPASEVRAYYEANADKFSEPERRRVAAIVVGDRALGEKVLKEAQKAGSSS 186
Query: 506 ----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS- 554
L K D+ LG + + + F
Sbjct: 187 AWGELFFKHSLTAPKDKSAAPPLDLAGELGIVSPPGDP----RGAHPRVPEPVRAAAFRI 242
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVG---PVQEKDK-FISYLTQMMNKDLLDSVIAYL 610
G V V +E + + ++ G E ++ L Q +D ++ L
Sbjct: 243 GGVGAVGEELVEADGRFFIVRLNGLTGGHRREFAEAERSIRVALLQQKMQDQERALEDEL 302
Query: 611 KSQYSVTVHDNLIQRYLDGEK 631
+ ++ V +++ + +
Sbjct: 303 RKKFPVEINEAALSSVKLPAQ 323
>gi|268316847|ref|YP_003290566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
DSM 4252]
gi|262334381|gb|ACY48178.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
DSM 4252]
Length = 684
Score = 54.1 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 69/663 (10%), Positives = 172/663 (25%), Gaps = 84/663 (12%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V G + + ++F ++ +G + + S+ + L+ V+
Sbjct: 28 NPEVVAVAGSEVIDLTTFE-------DQYARSVGNRLEAAD-DSLQAYQDFLERYVNYRL 79
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q G + D V + L +++ +V L + +D +
Sbjct: 80 RVQEARARGYDRDSAIVAEA-SAYQLELARNHLMRQEVIEPLLRTLYARMPDMVDIS-HI 137
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
R + L + ++ A + S
Sbjct: 138 FVRVPTDATPEDTLAAYRRLQALIDSVRQGADFNEIAFRHSDDPSARSPRSTRGGWGHIG 197
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
K + ++ + +++ Y ++
Sbjct: 198 WIKMGQTIEPMETYAFNTPVGELSPIFRTRYGYHVLKVHDRKPAPYDV----RAAHIMIT 253
Query: 279 NQKEADEAFQSLKK-----------GKKFIQLAEEQGKSL----SDISLGSFSKEYIPDV 323
+++ + + F +LA + + LG S V
Sbjct: 254 PAPTPEDSARVRRTLDSLRQLVLSGKADFAELARQHSEDWRTKSRGGDLGYLSFAQPMPV 313
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS----------------FQEV 367
+ D++F+L + GD + ++ FG I + + +P QE
Sbjct: 314 MVRDTLFALKEIGDVSHIVTTPFGLHIFQLKDRRPIPPTFEAAYDTLLTVADRLGRLQEA 373
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
+ Q+R L + A ++ R ++ ++DL + +D
Sbjct: 374 RNRFVAQLRRRLHVRLDTAQLFTLLQVAAHPDTLALRVSRRELGALDLSQPFASVEDSSY 433
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
I Y Q + ++ ++ R + +
Sbjct: 434 TLAELIDYINQQNLLRRTSRRDTIAQERLLRAADRFLDDRVLSYEALRRAEQDPEFQRTM 493
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGK-----------NFRDIGKNLGASLLTTNQINR 536
+D+ A ++ +A V E G F + + L + + +
Sbjct: 494 QDFIDGLLAFKLLEEAVWKVAERDTAGLRAYYEAHAGEFVFPERTRVLSFRTQRDSVLEQ 553
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIE-------NGLSY------------------ 571
E G + + ++ G Y
Sbjct: 554 RVYEPLQQGVPVARLIAELTADSSAGITVDTVYIEKPTGSFYDRALRLEAGRYTEPFRYW 613
Query: 572 ---VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
V+ + + + + + K+L + L+++Y + +++
Sbjct: 614 NGHVLLYNDGLEPPRPKTFREARADVLSAYQKELEARLDQGLRARYGARIFPERLRQAFA 673
Query: 629 GEK 631
E+
Sbjct: 674 AER 676
>gi|126728790|ref|ZP_01744605.1| PPIC-type PPIASE domain [Sagittula stellata E-37]
gi|126710720|gb|EBA09771.1| PPIC-type PPIASE domain [Sagittula stellata E-37]
Length = 412
Score = 54.1 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 17/142 (11%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
+ + S V V Q + + Q + + +
Sbjct: 23 GTPVAAQGLFSPAVIVNEQVITGYELEQ-----RKRMLQVMRAPGDLNKVAR-------- 69
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+ L+ Q D G++ + + + + F LA+ G++E+
Sbjct: 70 EQLIDDRLRLQAARDAGIQPSPEELLDGMEE----FASRASLTREQFTQALAQAGVDEET 125
Query: 151 YIDHYTKMLSRTDVVGMFVGGM 172
Y D LS +V G
Sbjct: 126 YRDFVRAGLSWRMLVQQRFAGR 147
>gi|284035738|ref|YP_003385668.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
DSM 74]
gi|283815031|gb|ADB36869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
DSM 74]
Length = 458
Score = 53.7 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/177 (9%), Positives = 52/177 (29%), Gaps = 18/177 (10%)
Query: 10 RTWVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ ++ + L ++ F+ +G + S + + V V S +++ +
Sbjct: 2 KKVISSVLLGLVGWFLTMPAFGQGQGV---SLNKIIAKVDNYYVLRSDLEEAYQSYV--- 55
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
G + ++L++LV + E + D V E+ +
Sbjct: 56 ----GQNQTPPQ------KCQLLESLVINKMMLAKAEIDSVVVDDKIVDSELDSRMQYMV 105
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
+ ++ + + + E + ++ + + +
Sbjct: 106 QQFGSDKNIVEAYGKSLEMLKSELRSQVKDQKVVQKMQQKITTDVKVTPRDVRRFYD 162
>gi|116630072|ref|YP_815244.1| peptidylprolyl isomerase [Lactobacillus gasseri ATCC 33323]
gi|238854106|ref|ZP_04644453.1| foldase protein PrsA 1 [Lactobacillus gasseri 202-4]
gi|311110302|ref|ZP_07711699.1| foldase protein PrsA 1 [Lactobacillus gasseri MV-22]
gi|116095654|gb|ABJ60806.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus gasseri ATCC
33323]
gi|238833182|gb|EEQ25472.1| foldase protein PrsA 1 [Lactobacillus gasseri 202-4]
gi|311065456|gb|EFQ45796.1| foldase protein PrsA 1 [Lactobacillus gasseri MV-22]
Length = 298
Score = 53.7 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 87/249 (34%), Gaps = 10/249 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ Y +++E A +++ + + + S V K V + V
Sbjct: 42 QYYNKMKESQAGQSTLASMIVSDALESQYGKEVTQ--KQVDKEYNKYKKQYGSQFDSVLE 99
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ + L +K + ++ + + + S A
Sbjct: 100 QNGMTASTFKDNLKTNLLTEAALKHIKKITPAQEKKAWKNYQPEVTVQHILVSKKSTAED 159
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMVKC 562
++ + K+G +F+ + K T N + D+ + + F +
Sbjct: 160 IIKQL-KDGGDFKKLAKKYSTDTATKNDAGKLPAFDSTDSTLDSSFKTAAFKLKTGEITT 218
Query: 563 FPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTV 618
P++ Y V K+ +K + K + + + Q M++D ++ SVIA + + V++
Sbjct: 219 TPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQIYQSMSEDQSVMRSVIATVLKRADVSI 278
Query: 619 HDNLIQRYL 627
D ++ L
Sbjct: 279 KDKDLKNVL 287
>gi|206603473|gb|EDZ39953.1| Putative peptidyl-prolyl cis-trans isomerase [Leptospirillum sp.
Group II '5-way CG']
Length = 340
Score = 53.7 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 49/397 (12%), Positives = 116/397 (29%), Gaps = 66/397 (16%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
A L + FL G + + + V + S S + ++
Sbjct: 10 AIFLSATLLLSFLQAGTARGERVLV-DQVMAVVNHHMITKSELDRSLAPTFKKLHKRFRG 68
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
E S+ +L ++ + E GL + I K+N S
Sbjct: 69 KAYRELVASLEYK--LLMKKINERLELEEAERQGLTVTDDELDHAIESIMQ---KNNFTS 123
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ L+ +G++ + Y K ++ +V V
Sbjct: 124 KWQLKTALSEQGMSYRRYKQQLRKQMTILKLVNQEVRSTVV------------------- 164
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
S + Q++ ++D YR P ++ + ++
Sbjct: 165 --------------ISPDEVRQYYLAHRDKYRLPP-----HVTLRDIFLRIPEGATEAQI 205
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + + + ++ ++ E + + +LG
Sbjct: 206 QEIRKHGEHILRQLKRGDDFVILAGSESEG--------------------PNAENGGALG 245
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+K+ + + + G + +I S G+ I + + + SF+E+K I N
Sbjct: 246 DLTKDQLLPELVQPA--FTIPPGQTSGLIQTSNGFYIIKIIKREDNSFRSFKELKSQILN 303
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ ++++ ++L E + + +K
Sbjct: 304 DLTKKTTDKRLRIWLEKLREKSYVVIYAKPEAFDQKA 340
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 22/226 (9%), Positives = 59/226 (26%), Gaps = 11/226 (4%)
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG--SYMW 465
+ + +G + + + + + V PD Y
Sbjct: 116 MQKNNFTSKWQLKTALSEQGMSYRRYKQQLRKQMTILKLVNQEVRSTVVISPDEVRQYYL 175
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ L ++ + + + E K + +L K G +F + +
Sbjct: 176 AHRDKYRLPPHVTLRDIFLRIPEGATEAQIQEI--RKHGEHILRQLKRGDDFVILAGSES 233
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
N D + + F+ P I+ + + K+ + +
Sbjct: 234 EGPNAENGGALGDLTKDQLLPELVQPAFTIPPGQTSGL-IQTSNGFYIIKIIKREDNSFR 292
Query: 586 EKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVH--DNLIQR 625
+ S + + L + L+ + V ++ +
Sbjct: 293 SFKELKSQILNDLTKKTTDKRLRIWLEKLREKSYVVIYAKPEAFDQ 338
>gi|67458647|ref|YP_246271.1| hypothetical protein RF_0255 [Rickettsia felis URRWXCal2]
gi|75536887|sp|Q4UMV2|Y255_RICFE RecName: Full=Uncharacterized protein RF_0255; Flags: Precursor
gi|67004180|gb|AAY61106.1| unknown [Rickettsia felis URRWXCal2]
Length = 296
Score = 53.7 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/198 (14%), Positives = 63/198 (31%), Gaps = 16/198 (8%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K+ L+++ V F + S + V SV + + + F + + + V
Sbjct: 3 KLLLIIITVFFAF-----NVAQASLPNIVASVNYEPITLNEF-----RARKKMIMALNNV 52
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ A+ L + +L+ + L Q+ D E + I NK H
Sbjct: 53 ESLTPAQDKQLSDLAIKSLIDESLLFQYAGDR--EIPQEEIDNAIKSIE----DHNKMPH 106
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ L +N +I L + +++ ++ SN +D A +
Sbjct: 107 GSLLQYLKSRSVNPDSFISQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEIS 166
Query: 195 IVLNNRHVPAIADPSNAV 212
+ + +
Sbjct: 167 MQVFTSKDGGNKAFTQMN 184
>gi|170703395|ref|ZP_02894173.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria IOP40-10]
gi|170131694|gb|EDT00244.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria IOP40-10]
Length = 260
Score = 53.7 bits (126), Expect = 8e-05, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + + + + D+ + + Q + + L + L+ Q +
Sbjct: 202 QMTDTPVKTQFGWHIIRADDIRDVAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQAKIQ 260
Score = 44.1 bits (101), Expect = 0.082, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 58/156 (37%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + + E++A Y++ + + ++ ++++A + +K G KF
Sbjct: 101 MIESFLKKNQPTEAEVKARYDELVKGAGGNREYHLHHILVDSEQQAKDLIAKIKGGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRAD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+I+ F +VK IA Q+ K + ++
Sbjct: 221 DIRDVAPPPFDQVKAQIAQQLVQQKLQAFEEGLRQQ 256
Score = 37.1 bits (83), Expect = 9.1, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + + S L + + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADAMVAQLVQQ-----------GQTDSPQLQQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIREGI 79
>gi|298528165|ref|ZP_07015569.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
ASO3-1]
gi|298511817|gb|EFI35719.1| conserved hypothetical protein [Desulfonatronospira thiodismutans
ASO3-1]
Length = 312
Score = 53.7 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/298 (12%), Positives = 85/298 (28%), Gaps = 13/298 (4%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
++F+ L WG S V +V Q + + + G
Sbjct: 5 FFVTALVFLAVLAWGCS---PDSPEEGVVATVNGQPIYLDEVESGYDA--DYFKWSRGVP 59
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ + +S +L +LV ++Q + G D G V I R D F
Sbjct: 60 PDLKEIKSSYGR--VLLDLVVQKLIEQELNSSGHAVDPGEVAK-IEREIRQDYPDGGFEE 116
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ + E D + + + ++ + +
Sbjct: 117 VLIEEHIDLEFWRASILKDLMWDKFKKEVLRPRISLDVEDVKEYYHYHIEDFYIPERIVF 176
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
+ L++ + + + F++ +D R E + ++ DEL
Sbjct: 177 LHLSSGKEDKLQEVLDT-----FQESEDISRIREKYPQVNVGEYEMRVDRLPLGLQDELT 231
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
+ K + +++ ++K++ L +E+ + L
Sbjct: 232 GLQKGEKSQIQKNRQGLYYRVMVMDRKDSKLLKPHQVYDIIEENLVQEKMHKVFYNWL 289
>gi|83816066|ref|YP_445916.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855]
gi|294507826|ref|YP_003571884.1| peptidyl-prolyl cis-trans isomerase surA [Salinibacter ruber M8]
gi|83757460|gb|ABC45573.1| peptidylprolyl cis-trans isomerase [Salinibacter ruber DSM 13855]
gi|294344154|emb|CBH24932.1| Peptidyl-prolyl cis-trans isomerase surA [Salinibacter ruber M8]
Length = 464
Score = 53.7 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 11/164 (6%), Positives = 40/164 (24%), Gaps = 11/164 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
VG + V S +++ + + E L LV L
Sbjct: 43 DRIAAVVGDEIVLKSEVDQLVRRQTRQQNVSYSNSLWME----------ALRQLVDQKLL 92
Query: 100 DQFIEDI-GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ + ++ ++ R + + + + ++++ +
Sbjct: 93 AEQARRDTTITVSDQQLSDQLDRRISQYVERAGSEERLEQAYGKSILEIKEQFREDLRGQ 152
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
+ + + + + + Q ++
Sbjct: 153 ILSQQLRRRRMQSIDITPSEVRQWFEQIPQDSLPQLPKTVRLSH 196
>gi|257453206|ref|ZP_05618505.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium sp. 3_1_5R]
gi|317059740|ref|ZP_07924225.1| predicted protein [Fusobacterium sp. 3_1_5R]
gi|313685416|gb|EFS22251.1| predicted protein [Fusobacterium sp. 3_1_5R]
Length = 549
Score = 53.7 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 62/561 (11%), Positives = 166/561 (29%), Gaps = 73/561 (13%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALF------SVSGSSTVVSVGRQKVPFSSFI 57
IRK + + K+ + ++ + + G S + + +KV
Sbjct: 2 AIRKFRK--IMKLVIFIVAIAMIGSGAWLTFTNLLQHHSAGETQYAYQLNGEKVSKVKIA 59
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ +++ + E + +++ Q ED+ ++ +
Sbjct: 60 REENNLMEQLNKMGQGKTSKELVSLI-----AFQKVINDELTLQLAEDMKIKVPSSEIKE 114
Query: 118 EIARSPLFHGKDNKF---------SHDVFVSRLAREGINEKEYIDH-------------- 154
E + G +F S F + L + +K
Sbjct: 115 EYEKIENSIGNKEQFKRMLSVQGYSKKSFKAMLEENLLLQKVMEKFAEEAKKSGKDGNLL 174
Query: 155 ------YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + D + ++ + + + + L A
Sbjct: 175 FQEALAKKRNEMKIDKLSPEYEKLQLKVVEEKDGFKITNVDMADRVTQLMLMTGEEEAKV 234
Query: 209 SNAVLTQW-----FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
+ V Q+ F K K + + + E E++ + +
Sbjct: 235 TEEVKKQFEEGIAFAKKAQEKGVLISKDLPINVQLAEYGKAFFEKLKSEVKIDEVELSRF 294
Query: 264 YFSPEIRTVEQ--------------------LVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
+ + R + + +E ++ + K L ++
Sbjct: 295 FQANHNRYNQHASIDVDVAVLKIVPSKEDIAAIEKKAEETLKSLKKENFAKIGADLQKKS 354
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
+++ LG F K + ++ FS + + VI FG + ++ ++ + +
Sbjct: 355 PETVIYEELGWFEKGAMVK-EFEEAAFSSKEAQIYPKVISTQFGKHLLYIQEVQENKVKA 413
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
+ +++A+Q I K+ ++ + ++L++ ++ I++ + + VD +G
Sbjct: 414 AHILFREVASQASIDKSLKEAESIKEKLDKKEVTFETLKNINKNL-LFAHTFTGVDKSGV 472
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
A+ + A G + + LEEV
Sbjct: 473 IQGFVTDKALVDTMYAAE----MNKVQIYSDDYAKKAGIIYLFSKTKQEEDKIVSLEEVQ 528
Query: 484 TDVKKDWKTVKTAEEVSSKAN 504
V+ ++++ + +E+ N
Sbjct: 529 DRVRDEYRSWRAQQELQKIMN 549
>gi|282890249|ref|ZP_06298779.1| hypothetical protein pah_c014o131 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499906|gb|EFB42195.1| hypothetical protein pah_c014o131 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 805
Score = 53.7 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 60/619 (9%), Positives = 157/619 (25%), Gaps = 29/619 (4%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV--SVGRQKVPFSSFIN 58
ML R R I V+ + F +G + + S G+ +V KV + N
Sbjct: 1 MLHFFRTYERYLYIVITF-VIVITFSFFGTYNEILSSGGTDETAFYTVDGSKVSRTDVQN 59
Query: 59 --SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ G + + K L ++ + + D+ +
Sbjct: 60 IVHFISTDSEDKLSFGGMWGPNFLNDGVIKKDFLQTGLAEILILHYQNDLK-----EELQ 114
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
++ + F + FV + ++ + V R
Sbjct: 115 KKLEKEKRFSLYTH--PQAKFVGVESVWNYLAPGMKTNFDTLRFSDKAVDPQTLASRVQL 172
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
L ++ + + Y + + L+ + +++ + +
Sbjct: 173 FLGERQLPPALISNVLRYQERQYDWISPDPNLERMDLSLFGYHTIEDWFGSRFVHLVAQF 232
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
K + + + + L++
Sbjct: 233 IANSAKIAEQKGYVVTKGEALADLIRHSEKSFQENQASPYLGLASSREYFNEQLRRMGMD 292
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
A + + + L + + D + + I G + +
Sbjct: 293 QTKAVQIWRQ---VLLFRRLFHDMGNSVFIDPLTIGQIQQFGNETIAGDVYRLPS----- 344
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD-EISRREKIVSIDL 415
++ ++K I K K+ + ++ EK ++++
Sbjct: 345 -ALRFSDWRSLQKFEIYLDAIAKRGVSAKDLLNLPTQLRSVDQVAKLTPELVEKKYTLEV 403
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
VD ++ Q A S V R
Sbjct: 404 AEVDKKALQSLFSIKETWHWEVQDANWAKLAKQFPELASHKAETQDSRFAVLDGLDQKMR 463
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
+ + ++ + +K+ ++VL K+G + G L++
Sbjct: 464 TKVDAYARGQMLEENPAKLSKALDEAKSKEIVLGLRKKGGSSLIKGLKDSQELMSLLDKA 523
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-L 594
+ ++ + VE +K F + Y + + + V + +
Sbjct: 524 PLKGQSASASQEI------EAVETLKHFTVNGNNYYRIEVLQKAPTETVMTFQEANQQGV 577
Query: 595 TQMMNKDLLDSVIAYLKSQ 613
+ L++ +++
Sbjct: 578 LDDLLNKTLENYYTKIRTD 596
>gi|183219611|ref|YP_001837607.1| putative signal peptide [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189909750|ref|YP_001961305.1| hypothetical protein LBF_0181 [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167774426|gb|ABZ92727.1| Conserved hypothetical protein [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167778033|gb|ABZ96331.1| Conserved hypothetical protein; putative signal peptide [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 349
Score = 53.7 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/199 (11%), Positives = 60/199 (30%), Gaps = 11/199 (5%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFINSWKQELGMISQKIGF 73
+F+ V + ++ L S + V VG + + + ++ +
Sbjct: 11 FVFIFAAVVSVSLTVPTNPLGSYESLNAVLAIVGPKSISTLDYEEGVERYKNLSR----- 65
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ L +++D L+ A +D ++ ++ + R+ EI + G
Sbjct: 66 -FFPNYRKKGSLHSQVIDFLIDRAVVDNVADEESIQVNEKRIEAEIQKRMEAQGIS---D 121
Query: 134 HDVFVSRLAREGINEKEYI-DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ F + + + D + + ++ + V PS +
Sbjct: 122 LEQFKKSVQSQFNLPYDVWLDDLPYQIKKGQLLQIKVSPPLPSEQEVQSWYNKNKAKVGN 181
Query: 193 DYIVLNNRHVPAIADPSNA 211
++ PA
Sbjct: 182 EFKFRELVFSPANGSIEEE 200
>gi|124004175|ref|ZP_01689021.1| chaperone SurA, putative [Microscilla marina ATCC 23134]
gi|123990245|gb|EAY29744.1| chaperone SurA, putative [Microscilla marina ATCC 23134]
Length = 460
Score = 53.7 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 42/508 (8%), Positives = 119/508 (23%), Gaps = 74/508 (14%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K+ L+ L + F ++ + V + S + + +
Sbjct: 15 IKVLLLCLAIGFSSMSMAQG-GGQLVDKIIAKVNNNIILESDLQQRYLEIISQ------- 66
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ A L KIL+ ++ L E + V ++
Sbjct: 67 --SQTTAPEKDLKCKILEEMIIQKLLVAKAEIDSVIVSDIEVNLQLD------------- 111
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
R K ++ + L +
Sbjct: 112 --------RRIDYMLKSVGGEKQQLEKLYGKTMDQIKEDIRDILKEQMTVSKMNGEITST 163
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ L + ++ + +
Sbjct: 164 VKITPKEVRQYFDSIPKDSLPYFSDEVEVGH----------------------------- 194
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
K P +++ +K + + + +++ + +LG
Sbjct: 195 -------IVKIPEPTKEQKQKIRQKLEKIRGRLMKGEDFAQLAQEFSQDYVSAKQGGNLG 247
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
++ ++ KK + + VI G+ + + + + + K +
Sbjct: 248 WQTRGVFVPK--FEAAVFRLKKNEISKVIETQLGFHVIQLLERRGNEFNTRHIFLKPDYS 305
Query: 374 QMRITKASEK-----VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
+ + +AS + L+ +A D+ + +
Sbjct: 306 LVDVGEASHFLDSVRTRILKDSLKFEVAAKNFSDDKITAGNGGMLTSQATGASMIATNDL 365
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
+ + + D Y +I + A + +++
Sbjct: 366 DSYLFLTLDTMKVGTVTPPQSYRTDDGKTAVRIIYFKKKISGHMAALSKDYQKIYNAALN 425
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKN 516
D K + + ++ ++ K K+
Sbjct: 426 DKKARAINKWFNKVKGEMFIKIDKAYKD 453
>gi|15892946|ref|NP_360660.1| hypothetical protein RC1023 [Rickettsia conorii str. Malish 7]
gi|34581354|ref|ZP_00142834.1| hypothetical protein [Rickettsia sibirica 246]
gi|81527992|sp|Q92GU9|Y1023_RICCN RecName: Full=Uncharacterized protein RC1023; Flags: Precursor
gi|15620140|gb|AAL03561.1| unknown [Rickettsia conorii str. Malish 7]
gi|28262739|gb|EAA26243.1| unknown [Rickettsia sibirica 246]
Length = 295
Score = 53.7 bits (126), Expect = 9e-05, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 16/196 (8%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L+++ V F + S + V SV + + + F + + + V +
Sbjct: 4 LLLIITVFFTF-----NVAQASLPNIVASVNDEPITLNEF-----RARKKMIMALNNVES 53
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
A+ L L +L+ + L Q+ D E + I NK H
Sbjct: 54 LTPAQDKQLSDLALKSLIDESLLFQYAGDR--EIPQEEIENAIKSIE----DRNKMPHGS 107
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ L +N +I L + +++ ++ SN +D A + +
Sbjct: 108 LLQYLKSRSVNPDSFISQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEISMQ 167
Query: 197 LNNRHVPAIADPSNAV 212
+ +
Sbjct: 168 VFTSKDGGNKAFTQMN 183
>gi|293603952|ref|ZP_06686366.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
43553]
gi|292817645|gb|EFF76712.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
43553]
Length = 258
Score = 53.7 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/149 (10%), Positives = 44/149 (29%), Gaps = 7/149 (4%)
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
E + + ++ V+ + AN L+ + F D+ K
Sbjct: 116 EYEKIKKEQAGKMEYKVRHILVEDEKT------ANDLLAQIKSNKSKFDDLAKKNSKDPG 169
Query: 530 TTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + + + V + P++ + + V +++ D
Sbjct: 170 SAEKGGDLGWAPPTNYVQPFAQAVTQLKKGQLVDKPVQTQFGWHIIMVDDTRPVEFPPLD 229
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L +M+ + L L+ + +
Sbjct: 230 QVRPQLEEMLRQQTLADYQKQLRDKAKIQ 258
Score = 39.1 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V +V + +P + K + S L +++ +++
Sbjct: 20 QNVATVNGKAIPQKNLDQFVKLLVSQ-----------GATDSPQLREQVKQEMINRQIFV 68
Query: 101 QFIEDIGL 108
Q E G+
Sbjct: 69 QAAESSGI 76
>gi|167622857|ref|YP_001673151.1| SurA domain-containing protein [Shewanella halifaxensis HAW-EB4]
gi|167352879|gb|ABZ75492.1| SurA domain [Shewanella halifaxensis HAW-EB4]
Length = 434
Score = 53.7 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + S K + G + S+ A L ++++ L+
Sbjct: 28 DRVTVQINEGIILESEVTGMVKTIRAN-AANAGQKLPSDTA----LRTQVIERLILTRLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IGL ++ I K+ K + +++ EG +Y + + +
Sbjct: 83 LQMADRIGLHIGDLQLDQTIENI----AKEQKMTVAQMKAQIESEGTTFAQYREQLREEI 138
Query: 160 SRTDVVGMFVG 170
+ ++ + V
Sbjct: 139 TLGEIQRIQVQ 149
Score = 41.8 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 15/204 (7%), Positives = 65/204 (31%), Gaps = 6/204 (2%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD- 485
G + LF D + +++ ++ ++++EV +
Sbjct: 231 GIWDYMNINEMPTLFAEVVTDAKTGDIIGPIKSASGFHIIKVMDARGLETKEVKEVKSRH 290
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFF 544
+ + + E S ++ + + F D+ + + + + + +
Sbjct: 291 ILLKPSPILSEERAKSMMDRFLTQVKSGEAKFEDLARQYSEDPGSAAKGGELGWADPNIY 350
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKD 601
++ S + P + + + ++ + +K ++ + + +
Sbjct: 351 VPAFAQELNSLEIGGY-SEPFRSTHGWHIVQLEERRTTDATDKFNTNRAHQLIYRRKFNE 409
Query: 602 LLDSVIAYLKSQYSVTVHDNLIQR 625
L + + ++++ + + + R
Sbjct: 410 ELQNWLDEMRAEAFIDIFEPETNR 433
>gi|221198202|ref|ZP_03571248.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
multivorans CGD2M]
gi|221208305|ref|ZP_03581308.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
multivorans CGD2]
gi|221171718|gb|EEE04162.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
multivorans CGD2]
gi|221182134|gb|EEE14535.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
multivorans CGD2M]
Length = 260
Score = 53.7 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/181 (12%), Positives = 55/181 (30%), Gaps = 11/181 (6%)
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-------- 498
+ P K + I+ + EV + KT E
Sbjct: 81 NRPDVKAQVAVAQQTVVLRAMIENFLKKNQPTDAEVKARYDELVKTAGGNREYHLHHILV 140
Query: 499 -VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGP 556
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 141 DSEQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQ 199
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ P++ + + +V + + + + + Q + + L + L+ Q +
Sbjct: 200 KGQMTDEPVKTQFGWHIIRVDDIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQAKI 259
Query: 617 T 617
Sbjct: 260 Q 260
Score = 44.5 bits (102), Expect = 0.058, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 60/156 (38%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + ++ E++A Y++ + + ++ ++++A + +K G KF
Sbjct: 101 MIENFLKKNQPTDAEVKARYDELVKTAGGNREYHLHHILVDSEQQAKDLIAKIKGGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I V
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDEPVKTQFGWHIIRVD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+I+ F +VK IA Q+ K + ++
Sbjct: 221 DIRDVAPPPFAQVKAQIAQQLVQQKLQTFEETLRQQ 256
>gi|296127129|ref|YP_003634381.1| hypothetical protein Bmur_2107 [Brachyspira murdochii DSM 12563]
gi|296018945|gb|ADG72182.1| conserved hypothetical protein [Brachyspira murdochii DSM 12563]
Length = 484
Score = 53.7 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 62/526 (11%), Positives = 150/526 (28%), Gaps = 68/526 (12%)
Query: 8 ASRTWVAKIF--------LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV---PFSSF 56
++ V K ++L V FL+ + T+ SV + S +
Sbjct: 10 KKKSPVVKTLQWLGVSAVSILLIVYFLVV----DTRGSQKTPTIGSVNGTPIYYTSTSPY 65
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
++K ++ Q +G +N+E + ++ VS L+ + +
Sbjct: 66 GRAFK-QIEAYYQSLGIQINNEMYQ--YIEDLAFRRAVSTILLNDVARK-NINVSDNFIV 121
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEK-EYIDHYTKMLSRTDVVGMFVGGMRPS 175
+ F + ++ + S + EK + + + ++ +
Sbjct: 122 EAMKS--EFIDTNGVYNEMAYESFIKNSTQAEKLRIEKDLRESILSQTISSELFTSIKIN 179
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+L + + + F R ++ + ++ + + + L ++F K N+ +
Sbjct: 180 SLDIQKEYKREFTKRDIEMVYIDAAAIVQSNEIAVNDLEKYFTDNKTNFVQADIS----- 234
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
++ +
Sbjct: 235 -------------------------------------WIMLESGGVADNLYKTLKDDITL 257
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
F + A E+G + ++ LG +K +P A+ IFS K I+ + Y I V++
Sbjct: 258 FEKSALEKGLNTNNYKLGYITKMQMPSDDFANKIFSDNKGQKLLEPIYANGYYYIVLVND 317
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID- 414
I+ + + + E K+ E A +++ + R I
Sbjct: 318 IRIPEKYTDVNQNVLKNEYLNANINTLLEAEKTKQAEVLKAAAANINNLQRLNGNGYIRY 377
Query: 415 ---LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + + IP F + V D +++
Sbjct: 378 YRPSQPFSYNQGRLSTVDGTIIPDSSTEAFYNHVFSLQTNTVSDVIKLDNGVAVIKLISE 437
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ +D K + N+ + + + N
Sbjct: 438 EKPNMTASYTLNSDNMNAIKRQRINNIQIEWENENIAKARVKKHNI 483
>gi|229587026|ref|YP_002845527.1| hypothetical protein RAF_ORF0929 [Rickettsia africae ESF-5]
gi|228022076|gb|ACP53784.1| Unknown [Rickettsia africae ESF-5]
Length = 295
Score = 53.7 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/196 (14%), Positives = 61/196 (31%), Gaps = 16/196 (8%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L+++ V F + S + V SV + + + F + + + V +
Sbjct: 4 LLLIITVFFTF-----NVAQASLPNIVASVNDEPITLNEF-----RARKKMIMALNNVES 53
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
A+ L L +L+ + L Q+ D E + I NK H
Sbjct: 54 LTPAQDKQLSDLALKSLIDESLLFQYAGDR--EIPQEEIENAIKSIE----DRNKMPHGA 107
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ L +N +I L + +++ ++ SN +D A + +
Sbjct: 108 LLQYLKSRSVNPDSFISQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEISMQ 167
Query: 197 LNNRHVPAIADPSNAV 212
+ +
Sbjct: 168 VFTSKDGGNKAFTQMN 183
>gi|197286178|ref|YP_002152050.1| peptidyl-prolyl cis-trans isomerase SurA [Proteus mirabilis HI4320]
gi|194683665|emb|CAR44613.1| chaperone SurA protein (peptidyl-prolyl cis-trans isomerase)
[Proteus mirabilis HI4320]
Length = 436
Score = 53.7 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 54/185 (29%), Gaps = 9/185 (4%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V V S + Q E L ++IL+ LV + Q
Sbjct: 34 AIVNNGVVLESDVNRMLQTV-----QMNAKNAGQEMPDEQVLRQQILERLVMDNIILQMA 88
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + ++ V I +N + + RLA +GI +Y K + +
Sbjct: 89 QQMQIDIPEAAVESTIQGIAA----ENNLTLEQLKKRLAADGIAYNDYRQDIRKEMMLAE 144
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
V V + E+++ I LN H+ + + + N
Sbjct: 145 VRNNEVRRRITILPQEVDSLAKQIESQASQSIDLNLSHILIPLSENPSPAEIEKAQQVVN 204
Query: 224 YRAPE 228
+
Sbjct: 205 RIKNQ 209
Score = 42.5 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 17/212 (8%), Positives = 60/212 (28%), Gaps = 7/212 (3%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D + A+I + + + G ++ ++
Sbjct: 226 DPQALNGGNMGWASIDELPTIFAKQLANAQKGEIVGPLQSGVGLHIIKVNDIRGASKTVS 285
Query: 479 LEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ EV + + E+ +K ++ + +F D K + + +
Sbjct: 286 VTEVKARHILLKSSPIMNDEQAYAKLQKISADIRSGKISFADAAKEYSEDPGSALRGGEL 345
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISY 593
+ + + + P+ + + + ++ + K++
Sbjct: 346 GWSMPDIYDPAFRDALMRLNKNELSQ-PVRSNFGWHLIELEDTRSVDKTDAANKEQAYRL 404
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV-HDNLIQ 624
L + + + + L++ V + ++N
Sbjct: 405 LFNRKFNEEVQNWMQELRAGAYVKIMNENNAN 436
>gi|327398211|ref|YP_004339080.1| SurA domain-containing protein [Hippea maritima DSM 10411]
gi|327180840|gb|AEA33021.1| SurA domain protein [Hippea maritima DSM 10411]
Length = 287
Score = 53.7 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 22/125 (17%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ +V + + N V +L+ ++ +
Sbjct: 28 DKIIATVNGKPITTYELQN------------------LAGFYRVNNLNTLLNEVIDDYLI 69
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q+ ++G+ V I + + N S D F+++L I+ Y + L
Sbjct: 70 RQYANNMGIIVSDEDVEKYIQQM----AEANNLSEDEFLAKLKESNIDLNYYKEGIKLRL 125
Query: 160 SRTDV 164
R
Sbjct: 126 YRIKF 130
Score = 42.2 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 46/156 (29%), Gaps = 7/156 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++I + L + K + + + V K+GK+F D+
Sbjct: 139 IKITDKDIENYYNLHKDKFKGKSKVLVLSIITLGDLETAKKVYSLLKKGKSFEDLLNKYS 198
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ +T ++ + ++ S G Y+V +
Sbjct: 199 TTKESTRKV-----PIETLNPYLQKKLLSLKPNQYTDIIQSAGKFYIVKLL--GTEEGES 251
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
KD + L L S + ++++ + V
Sbjct: 252 IKDTIRNTLIDQQITAKLKSWLKMIRARSDIEVFQK 287
>gi|288556815|ref|YP_003428750.1| hypothetical protein BpOF4_19095 [Bacillus pseudofirmus OF4]
gi|288547975|gb|ADC51858.1| hypothetical protein BpOF4_19095 [Bacillus pseudofirmus OF4]
Length = 253
Score = 53.7 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/193 (12%), Positives = 60/193 (31%), Gaps = 8/193 (4%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV--GLDKKILDNLVSGAT 98
V +V + + ++ + + + M+ + G N E +++ + +L L+
Sbjct: 60 EVVATVNGEDIERDDYVRAVESQ-AMMYTQFGIDFNDEEGQAMLEEVKDGVLQGLIEDRL 118
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
L Q ED +E + E+ + + S + LA +G ++ + + K
Sbjct: 119 LIQASED--VEVTDEEIDQELEMAMA---QSQIESQEQLEELLAEQGFTVEDLREDFEKQ 173
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L + S + A E ++ +
Sbjct: 174 LRVQKFIEEQTEAPEVSEEEIQSAYDQQVEMAEQSGAEEIPSFEEQRDSIEAELIQEARM 233
Query: 219 KYKDNYRAPEYKR 231
+D A ++
Sbjct: 234 AQRDQIVAELQEQ 246
>gi|15640000|ref|NP_219453.1| basic membrane protein (tpn39b) [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189026239|ref|YP_001934011.1| basic membrane protein [Treponema pallidum subsp. pallidum SS14]
gi|231640|sp|P29725|BMP_TREPA RecName: Full=Basic membrane protein; Flags: Precursor
gi|155055|gb|AAA27475.1| basic membrane protein precursor [Treponema pallidum]
gi|3323343|gb|AAC65966.1| basic membrane protein (tpn39b) [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018814|gb|ACD71432.1| basic membrane protein [Treponema pallidum subsp. pallidum SS14]
gi|291060373|gb|ADD73108.1| basic membrane protein [Treponema pallidum subsp. pallidum str.
Chicago]
Length = 361
Score = 53.7 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/199 (10%), Positives = 53/199 (26%), Gaps = 13/199 (6%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+ L + S + V R+ V K + I +++G +++
Sbjct: 5 IVPALLCVAGMGFAHAQSALQPIAEVNLFRREPVTLGQ----IKARISAIEKEMGKKLST 60
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
++ +D+L+ Q E G++ V +
Sbjct: 61 AE------RRQFMDSLIDEKLFAQAAEKAGIQVTDAEVNQYFNGMLSQQIGRAVTEAEFA 114
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
++ I+ +++ M + + +A F D +
Sbjct: 115 NYVKEKQNISLDQFMKQQNGMTMAEYKKFLKTQVSTQRYVAQKKADEFRNLKGPEDSQIR 174
Query: 198 NNRHVPAIADPSNAVLTQW 216
+ + A + +
Sbjct: 175 SYYELNKQAFFRPDTVKLF 193
>gi|84500986|ref|ZP_00999221.1| PPIC-type PPIASE domain protein [Oceanicola batsensis HTCC2597]
gi|84391053|gb|EAQ03471.1| PPIC-type PPIASE domain protein [Oceanicola batsensis HTCC2597]
Length = 402
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 41/130 (31%), Gaps = 17/130 (13%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
S + V + V + + + + + D L+
Sbjct: 26 SPAIKVNDKVVTEFELDQ-----RTRMLRLFRTPGDIDALAA--------DQLIDDRLRM 72
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q E+IG+ ++ +A F S + FV+ L + G+ + + D ++
Sbjct: 73 QAAEEIGISPSEDQI---MAGMEEF-AGRANLSAEQFVAALQQAGVAPESFRDFVRAGVA 128
Query: 161 RTDVVGMFVG 170
+ + G
Sbjct: 129 WRETIRARFG 138
>gi|332885978|gb|EGK06222.1| hypothetical protein HMPREF9456_00096 [Dysgonomonas mossii DSM
22836]
Length = 673
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 66/673 (9%), Positives = 179/673 (26%), Gaps = 97/673 (14%)
Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
L + + + + V S ++++ V+ L + +
Sbjct: 18 YLHAQQVDPVAIQIDGKPVFKSELEKAYRE----------SNVSRSDGEKESLPDFV-QS 66
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
+ + ++ + S + K Y
Sbjct: 67 YIDFRLNIAEAKAQRIDTTGNYIRD-------LSAARVGMSRKYMQDTICENDYLLKIYN 119
Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR-------FYFENRSVDYIVLNNRHVPAI 205
+ +V + P++ ++ K + Y + +
Sbjct: 120 RMQQNVEINHVLVPFEEKIIYPADTVVLYQKAIDLQGRLSKNGFAAEGYSKVLSSSTVLD 179
Query: 206 ADPSNAVL-----TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
+ N + + K + + +S + ++ +
Sbjct: 180 YNRQNGYIGWVAPFMFNAKVEQAIYSLHVNEVSMPIRCSDGYHIIQVLNKRPAVGSVDIE 239
Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI----SLGSFS 316
+ + I + K A +++++ + L +E + + G +
Sbjct: 240 QVLFNFSRIPADLNQIDSVGKVAWREYRNIRTASDYQSLCDEFTRVMQMGEKGCHFGVLN 299
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK-------- 368
E + ++ F+L K+GD + + +G+ I + P + + +
Sbjct: 300 LESRLSPTFIEAAFNLKKEGDVSEPVQSEYGFHIIRLLKKIPVPSYADMKSALKARILES 359
Query: 369 ---KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
+++ + R + E + + L + + ++D
Sbjct: 360 DKSEEMTIEKRKRMSQELGFNFNRVAYDRLNEIANKISPKDSSFLKNVDNNNDILFSFGD 419
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD-----------------------GS 462
K A + L + + P TV +
Sbjct: 420 KKIYTVANFVEYIRLRQNLMDNKPTDAPETVVYTEAINNSLSTDVLKEYFNAYYSRCLTD 479
Query: 463 YMWVQIKESIPARDRKLEEVLTDV-------KKDWKTVKTAEE-VSSKANQLVLEYSKEG 514
Y ++ + P ++L+E+ + K W+ T E+ +S + +YS G
Sbjct: 480 YYYLSLPNREPEYKKQLDEISNGLLSFGVMNKNIWERATTDEKGLSEYFKKNKNKYSFGG 539
Query: 515 ----------KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
K+ + + S N+ ++ D + + + P
Sbjct: 540 TKYRGLIVYAKDEKALTVATSLSKSEKNRDILIEKIRHALNKDSLRVLMEPGIWAKGENP 599
Query: 565 IENG-----------LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ + Y F V V + + + L A L+ +
Sbjct: 600 YVDNKVFAGKEVKAKMGYPYFIVLGDFVSKPTDYNDVRYAVESDYQALLEQQWKADLRKK 659
Query: 614 YSVTVHDNLIQRY 626
Y V ++++++
Sbjct: 660 YKVEINNSVLNTI 672
>gi|188586230|ref|YP_001917775.1| SurA domain [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350917|gb|ACB85187.1| SurA domain [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 255
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 11/128 (8%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGL-----------SDALFSVSGSSTVVSVGRQKVPFSSF 56
R + +++ V F G S + V V +++ +
Sbjct: 2 KLRKLILTALSLIILVTFAACGEEAPKDEAEPKESQDVEGEIEQDVVAVVNGEEIMYEEL 61
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ +Q + I + + L ++ L+ G L Q E GL D V
Sbjct: 62 SQTKEQLAFQMQMPIDQLEEQDDEMMNELRDMAMEELIGGTLLAQEAEAEGLTPDEEEVE 121
Query: 117 GEIARSPL 124
+ +
Sbjct: 122 KNLEQYTA 129
>gi|268319932|ref|YP_003293588.1| peptidylprolyl isomerase [Lactobacillus johnsonii FI9785]
gi|262398307|emb|CAX67321.1| peptidylprolyl isomerase [Lactobacillus johnsonii FI9785]
Length = 298
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 70/216 (32%), Gaps = 8/216 (3%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D K V + V ++ + L +K +
Sbjct: 73 DVTQKQVDKEYNKYKKQYGSQFDSVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQ 132
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---IN 535
++ + + S A ++ + G +F+ + K T N +
Sbjct: 133 EKKAWKSYQPEVTVQHILVSKKSTAEDVIKQLQDGG-DFKKLAKKYSTDTATKNDAGKLP 191
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISY 593
D+ + + F + P++ Y V K+ +K + K + +
Sbjct: 192 AFDSTDSTLDSSFKTAAFKLKTGEITTTPVKTQYGYHVIKMIKHPAKGTLKEHKKQIDNQ 251
Query: 594 LTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ Q M++D ++ SVIA + + V++ D ++ L
Sbjct: 252 IYQSMSEDQNVMRSVIATVLKRADVSIKDKDLKNVL 287
>gi|213161291|ref|ZP_03347001.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
Length = 399
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
N + D SRLA +G+N Y + K + ++V V
Sbjct: 107 NNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRIT 151
>gi|49475336|ref|YP_033377.1| hypothetical protein BH05420 [Bartonella henselae str. Houston-1]
gi|49238142|emb|CAF27350.1| hypothetical protein BH05420 [Bartonella henselae str. Houston-1]
Length = 322
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/230 (9%), Positives = 62/230 (26%), Gaps = 22/230 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+ ++K ++ + +S+ + + + VV+V + + +
Sbjct: 7 MNKLKKH-----ILTLFCIVPLSISNLLVSEIPSTFAQTVIVVTVNGKPITNYDIQR--R 59
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ QK G L ++ + L++ + I+ +E + V
Sbjct: 60 AAFLRLQQKQG-----------NLSEQAKNELINEVLKNIEIKRRNIEVSNNEVESAFKN 108
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
N + D L I + + D+ L +V +
Sbjct: 109 FAA----QNNMTVDQLNQILIDNDITVQHFKDYIRGQLGWGRLVNARYQAETGMISEQEA 164
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
+R P++ + + ++ + +
Sbjct: 165 VRRILKNGGVKPSTNEYTLQRIIFVIPAHRRSEIFERRQREANNFRAHFQ 214
>gi|23009953|ref|ZP_00050812.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
magnetotacticum MS-1]
Length = 218
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 7/136 (5%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NEN 541
+V V++ +E A ++ K G++F + L + + +
Sbjct: 66 EEEVHARHILVESEDEAKKIAARI-----KGGEDFAKVAAELSKDPGSKTEGGDLGWFTQ 120
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
+ F V P++ + V +V + PV D+ + Q + +
Sbjct: 121 ERMVKPFADAAFKLAPGQV-SDPVKTQFGWHVLRVEEKRTKPVPTFDEMKEQIDQYLTRK 179
Query: 602 LLDSVIAYLKSQYSVT 617
I L+ V
Sbjct: 180 AQQDTIVKLREAAKVE 195
>gi|217978662|ref|YP_002362809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
silvestris BL2]
gi|217504038|gb|ACK51447.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocella
silvestris BL2]
Length = 322
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 40/119 (33%), Gaps = 2/119 (1%)
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
+ + VL+ K G+ F + K + + + + + F
Sbjct: 174 ATDADAEAVLKRLKAGEEFAKVAKEVSKD-TSADGGDLGWFTKDKMVPEFAEAAFKLEPG 232
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+++ + + V + P D+ +++ + + ++A L+ +
Sbjct: 233 QL-SAPVKSPFGWHIILVEGKREKPFPALDEVKDQVSRYVVQKAQGELVAGLRKDAKIE 290
Score = 37.9 bits (85), Expect = 5.8, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
+ +V Q++ + + G + Q++ D ++D L+ GA + Q
Sbjct: 56 VLATVNGQEITENDLAIAKDDLAGSLPQQLQGK---------ARDTYVVDFLIDGALVSQ 106
Query: 102 FIEDIGLEADHG 113
+ L+A
Sbjct: 107 KAKADKLDATPE 118
>gi|261250209|ref|ZP_05942785.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio orientalis CIP
102891]
gi|260939325|gb|EEX95311.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio orientalis CIP
102891]
Length = 432
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V V V S S K +K G + SE L +++ + L+
Sbjct: 28 DTVAVIVNTSVVLQSDIDTSIKTLKANAKKK-GQSLPSEEI----LTEQVTEKLIVDTIQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E +G+ D R+ I+ K+N+ + + + +A EG+N E+ + K +
Sbjct: 83 QQEAERLGVRIDDNRLNEAISEI----AKNNQQTVEQLRASIASEGLNYAEFREQIRKEI 138
>gi|125975643|ref|YP_001039553.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum ATCC 27405]
gi|125715868|gb|ABN54360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum ATCC 27405]
Length = 382
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 83/298 (27%), Gaps = 10/298 (3%)
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
+ T VI+ + + S + + + KV++ + + +
Sbjct: 84 NTTEVINYFSQSYAVETKENFRTDSYSGEAPVEMARKKALDDIVEVKVQQILAKEKGIIE 143
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
+ + E + I Y + K K++ +
Sbjct: 144 STDYREFLKELENENRQRKDALKSNKVVYGPDNYGEIEYFNYSFDNMVSKLKEKLKENEL 203
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT---AEEVSSKANQLVLEYSK- 512
++P+ + R + +++ V T + +++ SKA + E K
Sbjct: 204 SIPEEKLESMY-NLLKDTRFKLPDDIKIQVISIGFTDEKGIINDDLKSKARVKIEEAKKR 262
Query: 513 --EGKNFRDIGKNLGASLLTTNQI--NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
G+ F ++ + + + + + V +
Sbjct: 263 IDNGEPFEEVALDYNPKSGVLEYVFTKEKQMAKDISHPELLDEALKLKPGQVSEIIERST 322
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ G + KD L + + I L Q V +++ L +R
Sbjct: 323 DFVLILCKEKKSTGYLPYKDA-RKQLLDELIEKDYQEYIDKLVEQADVKINEKLYRRI 379
>gi|153872855|ref|ZP_02001626.1| hypothetical protein BGP_3987 [Beggiatoa sp. PS]
gi|152070678|gb|EDN68373.1| hypothetical protein BGP_3987 [Beggiatoa sp. PS]
Length = 91
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML+ IR ++ W+A + ++++ +PF WG+++ FS + + V ++P F
Sbjct: 1 MLQNIRDGAKGWIAWVIVIIICIPFAFWGINEY-FSPAPKIVIAEVNGVELPERDFQQEM 59
Query: 61 KQELGMISQKIGFVVN 76
+ I + V
Sbjct: 60 AERKQRIRAMLNPVST 75
>gi|90419499|ref|ZP_01227409.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90336436|gb|EAS50177.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 346
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/286 (9%), Positives = 62/286 (21%), Gaps = 23/286 (8%)
Query: 21 LFVPFLIWGLSD------ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+ F++ G + + + S V + ++ + +++G
Sbjct: 42 AALAFVLAGSAAATLPATTVSVQAASEIKAVVNGMPITSYQIR---QRAAFLQLRRVGGN 98
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+K D L+ A Q I G+ V R +NK +
Sbjct: 99 AT----------QKATDELIDEALKKQEIGRRGIAIPDEAVDEAFGRFAA----ENKLTR 144
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ L+R G + + D+ + V + + +
Sbjct: 145 EQLGQVLSRAGFSSDGFKDYIRVQMGWGQAVQANMRSTERLSEQDVVQRMLAQGGEKPST 204
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
+ V + + K + ++ +
Sbjct: 205 TEYTLQQVIFVIPDAQRSALMAQRKREAESMRSRFQSCESTYEFAKGLRDVTVRDLGRVA 264
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ K + E A
Sbjct: 265 QPELPPRWKKDIQATSVGRTTPAQATERGVEFIAVCNTRNISDDKA 310
>gi|153005190|ref|YP_001379515.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
gi|152028763|gb|ABS26531.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
Length = 320
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/229 (10%), Positives = 72/229 (31%), Gaps = 10/229 (4%)
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
E ++ +L + K + K+ ++ ++ + Y
Sbjct: 66 ENLIRFELLAREAQAKGLDKDPEVQETLKKIMVQKLVRQAFDSEAGKPADDEARKYYDEH 125
Query: 468 IKE-SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+ E P R R + A + + +L +E K F ++ + L
Sbjct: 126 LDEFVKPERARVSAVIFAAPAGSPDRAAKAGQAKNALARLKVEGPKNPLAFSNLARELSD 185
Query: 527 SLLTTN-----QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+T + + + + F+ + +E + + K+ +
Sbjct: 186 DPVTKAAGGDLGYRTKEELSAQHSPELANAAFALREVGQESGVVETPRGFAILKLGARQA 245
Query: 582 GPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVTVHDNLIQRY 626
+ D+ + + + ++ DS + L+ + S+ + D +++
Sbjct: 246 PIDRPFDEVKAQIAARIGRESRTKEFDSYVKGLREKASIEIFDAELEKI 294
Score = 43.7 bits (100), Expect = 0.084, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 10/118 (8%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+G V V +F ++ I + ++ K+ L+NL+
Sbjct: 22 NGGPIVAKGDGISVTADAFKKKLDEQSPFIRARY---------SALERKKEFLENLIRFE 72
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
L + + GL+ V + + + F + E++D +
Sbjct: 73 LLAREAQAKGLD-KDPEVQETLKKIMVQKLVRQAFDSEAGKPADDEARKYYDEHLDEF 129
>gi|197118895|ref|YP_002139322.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter
bemidjiensis Bem]
gi|197088255|gb|ACH39526.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
bemidjiensis Bem]
Length = 351
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/356 (10%), Positives = 94/356 (26%), Gaps = 68/356 (19%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
S VV V + + K L K+ + E + L+ L S
Sbjct: 56 KSPAVVRVNGTPITKLDVERAVKVMLAQ--NKVDQPIPPEL--QKQAESAALEQLTSAEL 111
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
L Q + + +++ + + V L+ + + + K
Sbjct: 112 LYQEASKSKIPDLDKMIEQKVS-----QNRQKFKTEAELVEALSALEMTLPDLEEFTRKE 166
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + + A S+ + ++++
Sbjct: 167 IVLSTYIAEHFQN---------------------------------KASVSDEEVKKFYD 193
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ Y + + +++ E
Sbjct: 194 DNLNQYFKKPESVKASHILVGTDEKSTPEDKKK------------------------AKE 229
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+ + Q+ + + + LG F + + ++ K G+
Sbjct: 230 KAEALLKRLQAGEDFAAVAKGESTCPSASEGGDLGEFGRGQMV-PEFEEAA-FKLKPGEM 287
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ V+ FGY I V+ + + + VK+ I ++ K +++ L++
Sbjct: 288 SGVVETKFGYHIIKVTGKQEAAAEKLENVKETIVEFLKKQKEQQELSNFIDELKKK 343
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/212 (10%), Positives = 68/212 (32%), Gaps = 12/212 (5%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+ LV+ +++++ + + +K + +++
Sbjct: 141 TEAELVEALSALEMTLPDLEEFTRKEIVLSTYIAEHFQNKASVSDEEVKKFY----DDNL 196
Query: 473 PARDRKLEEVLTDVKKDWKTVKT---AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+K E V K+ ++ + + + +L+ + G++F + K
Sbjct: 197 NQYFKKPESVKASHILVGTDEKSTPEDKKKAKEKAEALLKRLQAGEDFAAVAKGESTCPS 256
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE--- 586
+ + + + F + +E Y + KVT + ++
Sbjct: 257 ASEGGDLGEFGRGQMVPEFEEAAFKLKPGEM-SGVVETKFGYHIIKVTGKQEAAAEKLEN 315
Query: 587 -KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
K+ + +L + + L + I LK + +
Sbjct: 316 VKETIVEFLKKQKEQQELSNFIDELKKKAKIE 347
>gi|242279457|ref|YP_002991586.1| hypothetical protein Desal_1987 [Desulfovibrio salexigens DSM 2638]
gi|242122351|gb|ACS80047.1| conserved hypothetical protein [Desulfovibrio salexigens DSM 2638]
Length = 319
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 50/179 (27%), Gaps = 17/179 (9%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI + VL L + V + S + + GFV
Sbjct: 3 KILIGVLLACSLF----GCQNKSEEPGIIARVNGNPIYLSQLEYKYDLTHEGVG---GFV 55
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD----- 129
+ E+ R+ +IL +L+ + Q +E + + + D
Sbjct: 56 PSVEQVRAEY--GQILGDLIVQELVAQELEQREIPVSDKELKEAEDEVRSDYPDDSFEQI 113
Query: 130 ---NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ + S+L + +K + D + S+ + +F
Sbjct: 114 LIEEYIDINAWRSQLKYQLAMDKFFQDILRPEIKIDYKEAEKYYRTHLSDFYMPAGYKF 172
>gi|320106396|ref|YP_004181986.1| SurA domain-containing protein [Terriglobus saanensis SP1PR4]
gi|319924917|gb|ADV81992.1| SurA domain protein [Terriglobus saanensis SP1PR4]
Length = 240
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/223 (10%), Positives = 54/223 (24%), Gaps = 21/223 (9%)
Query: 14 AKIFLVVLFVPFLIWGLSDAL-------FSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
++F V L + F+ + S + V Q + S +
Sbjct: 7 FRVFAVALLLCFICRSMPAQTPAKPADPRGESVDRIIAIVNGQIILQSDLDEEVRFAKLQ 66
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE-ADHGRVWGEI----AR 121
L ++ + L+ + Q + +G + I
Sbjct: 67 ---------PYRLGAGKTLREQAMSRLIDRTLILQQQQGMGQAPITDAELDAAITDLRKD 117
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
P + E+ ++ + F G+R S+ +++
Sbjct: 118 LPACAHAACETDEGWIKFLAGVGFTPEEVRERWRIRLEVLRFIEQRFRAGIRISDAQIEE 177
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ + V A +L Q D +
Sbjct: 178 FYKTTMLPQYAQQKVQPPPLETISARIEQVLLEQQVSVLLDQW 220
>gi|302391506|ref|YP_003827326.1| hypothetical protein Acear_0721 [Acetohalobium arabaticum DSM 5501]
gi|302203583|gb|ADL12261.1| TPR repeat-containing protein [Acetohalobium arabaticum DSM 5501]
Length = 404
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/201 (12%), Positives = 62/201 (30%), Gaps = 29/201 (14%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFL-----------IWGLSDALFSVSG-----SSTVVS 45
+ +R SR I + ++ + F+ G + S + +
Sbjct: 3 FDNLRNNSR-----ILIYIVIIAFVGGGVLVGLSGYFNGSNSNAQSQNQTAHAQQQNIAV 57
Query: 46 VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
V + + + F ++ + IG + + L ++L ++ L Q ++
Sbjct: 58 VNDKPIRYQDFQRGLQRFQQQSQRPIGNS------QVLALKNRVLQQMIDQELLLQKAKE 111
Query: 106 IGLEA--DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ V ++ G+ K ++ R + +K+ + K
Sbjct: 112 ENITVNISDQEVETQLDNWIKNTGRSRKEIENLLSDRGSSIAQVKKQLKEGMHKQKLINR 171
Query: 164 VVGMFVGGMRPSNLLLDQAKR 184
+V G+ + L A
Sbjct: 172 MVQQAQDGVEVTEKELKDAYE 192
>gi|288929625|ref|ZP_06423469.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317
str. F0108]
gi|288329130|gb|EFC67717.1| peptidyl-prolyl cis-trans isomerase [Prevotella sp. oral taxon 317
str. F0108]
Length = 474
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 44/359 (12%), Positives = 97/359 (27%), Gaps = 39/359 (10%)
Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAE----EQGKSLSDISLGSFSKEYIPDVSLADSIF 330
L ++ D + +LK+G F LA ++G + L K +
Sbjct: 145 LQRRAEQRIDSIYNALKRGADFAALARKLSDDKGSAQQGGELPWLQKGQTLKEFEDAA-- 202
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
K G+ + + GY I + I + + + + +
Sbjct: 203 FALKPGEISKPLLSPAGYHIIKMIER----RSFLPYDSVKADIFAYIEQTNMREQIIDNK 258
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
L E + + + + + D A + + + + L
Sbjct: 259 LNELAKASPTPRTTADVLEERAQAMQAKDPALRFLIQEYHDGL------LLYEISNRTVW 312
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQLV 507
K Y K R + K ++ N+ +
Sbjct: 313 EKAAKDEEGLRYYFNKNKKRYAWDSPRFKGIACYAKSKADLKAAKKKVKNLPFNEWNEAL 372
Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
+ R + L ++R VF I++
Sbjct: 373 RKAFNNDSTIRIKAERGVFKLGDNPVVDRD--------------VFKQK------VAIKD 412
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ + V K+ +E D + + + L + L+ QY V V++ +++
Sbjct: 413 DANFPIVGVIGKKLKAPKEMDDVRALVVADFQETLEKEWVKDLRKQYKVEVNEAVLKTV 471
>gi|171060801|ref|YP_001793150.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
SP-6]
gi|170778246|gb|ACB36385.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
SP-6]
Length = 359
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 11/96 (11%), Positives = 30/96 (31%), Gaps = 4/96 (4%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
+VG + + + + + +K E A +++ D +V+ L
Sbjct: 59 ATVGDTVISRADYQRALAV---AMRKKYYHAKPPE-AEFARFRREVGDEVVNRVLLLAEA 114
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
G+ D ++ +A + + +
Sbjct: 115 RRRGIVPDREQIAATVAGYDAQYASSANWQANRDQM 150
>gi|23097999|ref|NP_691465.1| hypothetical protein OB0544 [Oceanobacillus iheyensis HTE831]
gi|22776223|dbj|BAC12500.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
Length = 242
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 50/165 (30%), Gaps = 11/165 (6%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+VV V +V +++ ++ M+ Q + E L + +D LV
Sbjct: 58 DKKESVVVVNGTEVNGTTYNAAYSLVKSMMHQSGQDTSDLE-----ALKDQTVDFLVEQE 112
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ Q + G+E + E+ + F + L + + E+ +
Sbjct: 113 LMLQEANNAGIEVTDKELEEELKAYKESANEG------QFTTMLEQLNMTEENFKHQLRY 166
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
L+ + V + + + ++ +
Sbjct: 167 DLTTMEYVEQEFEVEVTDKEVEELYNQMTEQSEGEAQELSEVEDQ 211
>gi|78044263|ref|YP_359467.1| hypothetical protein CHY_0611 [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996378|gb|ABB15277.1| conserved domain protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 221
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 39/163 (23%), Gaps = 14/163 (8%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V +G + V F + + G V E +L+ L L +
Sbjct: 52 VVARIGDRDVTLREFELFKRSYV-----LDGRTVTPEE---------VLEELKRRTVLKE 97
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
E + V I K + + L+ ++
Sbjct: 98 EAEKRKITVSDEEVEKAIQDYKEGMENLKKTNPAEYSEFLSYLEGLNMTEEQYWKSKEIF 157
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
V G +L + ++++ + +
Sbjct: 158 EIYRKALVTGKVRKAILKELSEKYNLTGNELQKKYRDYIEEEK 200
>gi|256827570|ref|YP_003151529.1| parvulin-like peptidyl-prolyl isomerase [Cryptobacterium curtum DSM
15641]
gi|256583713|gb|ACU94847.1| parvulin-like peptidyl-prolyl isomerase [Cryptobacterium curtum DSM
15641]
Length = 404
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 40/153 (26%), Gaps = 9/153 (5%)
Query: 45 SVGRQKVPFSSFINSWKQELGMI----SQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+V ++ + + + G + + +I+D V
Sbjct: 40 TVNGTEISEQTVTDFVQNFRETQGLTDEDTWGKWMAKSSMTPSQVRDQIIDYFVGIDLTR 99
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q E+ G+ V ++A + D + S L + G E+ Y D +
Sbjct: 100 QAAEENGVSVSDEDVDAQVASMKANYS-----DDDAWQSALKQAGTTEEGYRDSVHNAML 154
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + RS
Sbjct: 155 ENALKEKVTAESTAGASDEELLTYAQQYARSFS 187
>gi|329296585|ref|ZP_08253921.1| peptidyl-prolyl cis-trans isomerase SurA [Plautia stali symbiont]
Length = 431
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
S N + +Q+ G + + L + L+ V A + Q E GL+
Sbjct: 39 ESDVDNMLRTVKSQ-AQQAGQQLPDD----KTLRHQFLERQVMDAIILQMGEKAGLQVSD 93
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ I N+ S D SRLA +G+N +Y K + ++V V
Sbjct: 94 QQLDQAIQSIAA----QNRMSVDQLRSRLAYDGMNYNDYRAQIRKEMLISEVRNNEVR 147
Score = 41.8 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 35/406 (8%), Positives = 102/406 (25%), Gaps = 11/406 (2%)
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
++ + + + + + Q ++ + Q++
Sbjct: 22 PQMVDKVAAVVNNGVVLESDVDNMLRTVKSQAQQAGQQLPDDKTLRHQFLERQVMDAIIL 81
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ E ++ Q + S+ ++ D + K+ + V
Sbjct: 82 QMGEKAGLQVSDQQLDQAIQSIAAQNRMSVDQLRSRLAYDGMNYNDYRAQIRKEMLISEV 141
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ + + + + ++ +
Sbjct: 142 RNNEVRRRVTILPQEVDTLAKQIGSQNTQGTELNISQILLPLPENPTQQQVDDQEALARQ 201
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
+ L V ++ K K + L +F + +K + P
Sbjct: 202 LVGELKGGADFGKL-AVTYSADPQALKGGNMGWGKIEELPTLFSQTLSSAKKGDIVGPIR 260
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK-----TAEEVSSKANQLVLEYSKEGKN 516
S + I + R +T+V +K T ++ K Q+ +
Sbjct: 261 SGVGFHILKVNDLRGESKNISVTEVLARHILLKPSPILTDDQARQKIEQITADIKSGKTT 320
Query: 517 FRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
F L + NQ +D + + V P+ + + + +
Sbjct: 321 FAAAATQLSDDPGSANQGGDLDWASPEIDDPAFRDALLKLQKGQV-SAPVHSSFGWHLIQ 379
Query: 576 VTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + +K++ L + + + ++ V +
Sbjct: 380 LLDTRQVDKTDAAQKERAYRLLFNRKFAEEAQTWMQEQRASAYVKI 425
>gi|212636811|ref|YP_002313336.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
piezotolerans WP3]
gi|212558295|gb|ACJ30749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Shewanella
piezotolerans WP3]
Length = 434
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 9/131 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + S K + G + S+ A L ++++ L+
Sbjct: 28 DRVTVQINEGIILESEVAGMVKTIKAN-AANAGQKLPSDTA----LRTQVIERLILTRLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IGL ++ IA S + +++ +G + +Y + + +
Sbjct: 83 MQMADRIGLHIGDLQLDQTIANIAKEQNI----SVEDMRAQIESDGTSFAQYREQLREEV 138
Query: 160 SRTDVVGMFVG 170
+ ++ + V
Sbjct: 139 TLGEIQRIQVQ 149
Score = 41.8 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 16/196 (8%), Positives = 62/196 (31%), Gaps = 4/196 (2%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD- 485
G + LF D ++ ++I ++ + +++EEV +
Sbjct: 231 GIWDYMNINEMPTLFAEVVNDAKVNDIIGPIKSGAGLHILKIMDARGLQTQEIEEVKSRH 290
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
+ + + E ++ + + F DI + + + + +
Sbjct: 291 ILLKPSPILSEERAKGMMDRFLAQIRSGEAKFEDIARQYSEDPGSAVKGGELGWADPNVW 350
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDL 602
Q + + P + + + ++ + E+ ++ + + +
Sbjct: 351 VPAFKQALNSLKKGEISEPFRSTHGWHIVQLEGRRTTDATEQFNTNRAHQLIYRRKFNEE 410
Query: 603 LDSVIAYLKSQYSVTV 618
L + + ++++ + +
Sbjct: 411 LQNWLDEMRAEAFIDI 426
>gi|297621734|ref|YP_003709871.1| hypothetical protein wcw_1516 [Waddlia chondrophila WSU 86-1044]
gi|297377035|gb|ADI38865.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
Length = 349
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/207 (9%), Positives = 48/207 (23%), Gaps = 7/207 (3%)
Query: 10 RTWVAKIFLVVLFVP-FLIWGLSDALFSVS-----GSSTVVSVGRQKVPFSSFINSWKQE 63
R+ + + + + + + + + Q + +
Sbjct: 3 RSIFLTLVAALFMLGQLAAVSANSMFLAQPKHIFVNNRILAKINGQPISVIDVMKQMDMF 62
Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ + K+ L++L+ + +++ L HG V EI
Sbjct: 63 FYRQFPQYANSPEARYQFYNMSWKRALEDLIDKELIKADAKEVNLPMTHGEVRQEIENI- 121
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
A + E + V+ M + +
Sbjct: 122 FGPNIIANLDKAGLTYEEAFDLTKEDILFKKMMMARVNSIVLRSITPQMVVDHYKTWAEQ 181
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSN 210
E I + A + +N
Sbjct: 182 NSQPEKWIYQVISVRGGSNEASSTIAN 208
>gi|156935427|ref|YP_001439343.1| peptidyl-prolyl cis-trans isomerase SurA [Cronobacter sakazakii
ATCC BAA-894]
gi|156533681|gb|ABU78507.1| hypothetical protein ESA_03285 [Cronobacter sakazakii ATCC BAA-894]
Length = 428
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
Q + + + + G + + L +IL+ L+ + Q + +G++ ++ I
Sbjct: 45 LMQSVKLNANQAGQQLPDD----STLRHQILERLIMDQIMLQMGQKMGVKISDEQLDQAI 100
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
A K N + D SRLA +G+N Y K + ++V V
Sbjct: 101 ANI----AKQNNMTLDQMRSRLAYDGLNYNTYRAQIRKEMIISEVRNNEVR 147
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 26/370 (7%), Positives = 92/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + + ++ E ++Q++ ++ + + +A++ +L +
Sbjct: 58 QQLPDDSTLRHQILERLIMDQIMLQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ A + + + V + + +
Sbjct: 118 LAYDGLNYNTYRAQIRKEMIISEVRNNEVRRRVTILPQEVETLAEQVGNQNDASTELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I + E ++I D I
Sbjct: 178 HILIPLPENPTADQVSEAEAQARSIIDQARNGGDFGKLAITYSA-DQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPSVFAQALSTAKKGDVIGPIRSGVGFHIIKVNDLRGQSQTVSVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ T ++ K ++ + F + + NQ + +
Sbjct: 297 IMTDQQARQKLEEIAADIKSGKTTFAQAAREFSQDPGSANQGGDLGWAAADVYDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIA 608
+ S + P+ + + + ++ +++ +KD+ L + + +
Sbjct: 357 LMSLSKGQMST-PVHSSFGWHLIELLDTRKSDRTDAAQKDRAYRMLFNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|227889497|ref|ZP_04007302.1| peptidylprolyl isomerase [Lactobacillus johnsonii ATCC 33200]
gi|227849975|gb|EEJ60061.1| peptidylprolyl isomerase [Lactobacillus johnsonii ATCC 33200]
Length = 298
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 70/216 (32%), Gaps = 8/216 (3%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D K V + V ++ + L +K +
Sbjct: 73 DVTQKQVDKEYNKYKKQYGSQFDSVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQ 132
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---IN 535
++ + + S A ++ + G +F+ + K T N +
Sbjct: 133 EKKAWKSYQPEITVQHILVSKKSTAEDVIKQLQDGG-DFKKLAKKYSTDTATKNDAGKLP 191
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISY 593
D+ + + F + P++ Y V K+ +K + K + +
Sbjct: 192 AFDSTDSTLDSSFKTAAFKLKTGEITTTPVKTQYGYHVIKMIKHPAKGTFKEHKKQIDNQ 251
Query: 594 LTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ Q M++D ++ SVIA + + V++ D ++ L
Sbjct: 252 IYQSMSEDQNVMRSVIATVLKRADVSIKDKDLKNVL 287
>gi|269216505|ref|ZP_06160359.1| putative peptidylprolyl isomerase PrsA3 [Slackia exigua ATCC
700122]
gi|269130034|gb|EEZ61116.1| putative peptidylprolyl isomerase PrsA3 [Slackia exigua ATCC
700122]
Length = 424
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/196 (9%), Positives = 48/196 (24%), Gaps = 12/196 (6%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR--------SVGLDK 87
S + +V + N+ + +++ A+ + L K
Sbjct: 44 SDTSGGVAATVNGTDIG----ENAVSSYVANFRNLNSLNEDTDWAQWMVDNGYTAEDLRK 99
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++++ VS + Q E ++ D V ++ + + D S + + + +
Sbjct: 100 EVINYYVSQELVRQAAEQNNVKVDEDAVDEQLNTMKMNYDSDGDGSLNADETASWNKALQ 159
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ + + I
Sbjct: 160 AVGIASEDEYRTLLEMYSLEASLQKAVVPDTAPSDEDMLQYAQMYATAYDGAKKSSHILF 219
Query: 208 PSNAVLTQWFEKYKDN 223
S+ T K N
Sbjct: 220 ASDDQATAQEVLDKIN 235
Score = 41.8 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 37/131 (28%), Gaps = 10/131 (7%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+ A +++ + + +F + K + + + F + +
Sbjct: 224 QATAQEVLDKINSGELDFAEAAKQYSTDTASAADGGNVGWDVLNSFVKEYTDALSGLGEG 283
Query: 559 MVKCFPIENGLSYVVF---------KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
V +++ +VT+ P + D + L Q +
Sbjct: 284 EVSGLVTSEYGIHIIKCTQVFKTPEEVTSVDQIPSEWLDSIKASLQQANKTSAYKAWFKD 343
Query: 610 LKSQYSVTVHD 620
+TV+D
Sbjct: 344 FYDSADITVND 354
>gi|260596477|ref|YP_003209048.1| peptidyl-prolyl cis-trans isomerase SurA [Cronobacter turicensis
z3032]
gi|260215654|emb|CBA27953.1| Chaperone surA [Cronobacter turicensis z3032]
Length = 440
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
Q + + + + G + + L +IL+ L+ + Q + +G++ ++ I
Sbjct: 57 LMQSVKLNANQAGQQLPDD----STLRHQILERLIMDQIMLQMGQKMGVKISDDQLDQAI 112
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
A K N + D SRLA +G+N Y K + ++V V
Sbjct: 113 ANI----AKQNNMTLDQMRSRLAYDGLNYNTYRAQIRKEMIISEVRNNEVR 159
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 25/370 (6%), Positives = 92/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + + ++ E ++Q++ ++ + + +A++ +L +
Sbjct: 70 QQLPDDSTLRHQILERLIMDQIMLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSR 129
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ A + + + V + + +
Sbjct: 130 LAYDGLNYNTYRAQIRKEMIISEVRNNEVRRRVTILPQEVETLAEQVGNQNDASTELNLS 189
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I + E ++I D I
Sbjct: 190 HILIPLPENPTADQVSEAETQARSIIDQARNGGDFGKLAITYSA-DQQALKGGQMGWGRI 248
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 249 QELPSVFAQALSTAKKGDVIGPIRSGVGFHIIKVNDLRGQSQTVSVTEVHARHILLKPSP 308
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ T ++ K ++ + F + + NQ + +
Sbjct: 309 IMTDQQARQKLEEIAADIKSGKTTFAQAAREFSQDPGSANQGGDLGWAAADIYDPAFRDA 368
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIA 608
+ + + P+ + + + ++ +++ +KD+ L + + +
Sbjct: 369 LMNLSKGQMST-PVHSSFGWHLIELLDTRKSDRTDAAQKDRAYRMLFNRKFSEEAATWMQ 427
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 428 EQRASAYVKI 437
>gi|239947019|ref|ZP_04698772.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921295|gb|EER21319.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 295
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 16/196 (8%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L+++ V F + S + V SV + + + F + + + V +
Sbjct: 4 LLLIITVFFTF-----NVAQASLPNIVASVNDEPITLNEF-----RARKKMIMALNNVES 53
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
A+ L ++ +L+ + L Q+ D E + I NK H
Sbjct: 54 LTPAQDKQLSDLVIKSLIDESLLFQYAGDR--EIPQEEIDNAIKSIE----DRNKMPHGS 107
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ L +N +I L + +++ ++ SN +D A + +
Sbjct: 108 LLQYLKSRSVNPDSFISQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEISMQ 167
Query: 197 LNNRHVPAIADPSNAV 212
+ +
Sbjct: 168 VFTSKDGGNKAFTQMN 183
>gi|308185631|ref|YP_003929762.1| survival protein SurA precursor [Pantoea vagans C9-1]
gi|308056141|gb|ADO08313.1| survival protein SurA precursor [Pantoea vagans C9-1]
Length = 431
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 8/131 (6%)
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+ +Q+ G + + L +IL+ + + Q E G++ ++ I
Sbjct: 48 TVKSQAQQAGQQLPDD----KTLRHQILERQIMDNIILQMGEKAGIQISDEQLDQAIQNI 103
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
N+ S D SRLA +G+N Y K ++ +V V
Sbjct: 104 AA----QNRMSLDQLRSRLAYDGMNYSVYRSQIRKEMTIAEVRNNEVRRRVTILPQEVDT 159
Query: 183 KRFYFENRSVD 193
+++
Sbjct: 160 LANQIGSQNSQ 170
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 18/205 (8%), Positives = 54/205 (26%), Gaps = 6/205 (2%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D I L + V G ++ +++
Sbjct: 222 DSQALKGGNMGWGKIEELPTLFAQALATAKKGDIVGPVRSGVGFHILKVNDLRGESKNVS 281
Query: 479 LEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ EV + + + T ++ ++ Q+ + F K + NQ +
Sbjct: 282 VTEVHSRHILLKPSPILTDDQARAQLEQIAADIRSGKTTFAAAAKQYSDDPGSANQGGDL 341
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISY 593
+ F + P+ + + + ++ + +K++
Sbjct: 342 GWTSPEVFDPAFRDALLRLKKGQTSQ-PVHSSFGWHLIQLLDTRQVDKTDAAQKERAYRM 400
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618
L + + + ++ V +
Sbjct: 401 LFNRKFAEEAQTWMQEQRASAYVKI 425
>gi|257066459|ref|YP_003152715.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
prevotii DSM 20548]
gi|256798339|gb|ACV28994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaerococcus
prevotii DSM 20548]
Length = 359
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/270 (11%), Positives = 70/270 (25%), Gaps = 12/270 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
TV V +K+ + + M++ + L I+ +V
Sbjct: 48 DDKTVAIVDGEKISKDDYKDELSFYASMLASQ------------QQLKNSIVTMMVQDKL 95
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ I+ ++ D V + +S G +F + ++ + E D K
Sbjct: 96 IANDIKKNDIKIDDKEVDDALMQSVQNFGGQEQFDKTLDDYNMSLDKFKETLKKDLMYKK 155
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
V D F + S + N
Sbjct: 156 HREWFDSNNEVTEDEIKKYFEDNKDEFVKVDASHILVQDEETAKEVKEKIDNGEDFAKLA 215
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ A + F + K+ E + ++ + K +
Sbjct: 216 EEYSTDTASAKNGGAVGAFSKGQMVKEFEDAAFSMKEGEVSDPVKSQFGYHIIKVNKITD 275
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
+ +++ E K +K+ ++ +
Sbjct: 276 SFEDSKEEITKKIKDQKYADYIKKLHDDAN 305
>gi|58698186|ref|ZP_00373108.1| conserved hypothetical protein [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225630920|ref|YP_002727711.1| hypothetical protein WRi_012370 [Wolbachia sp. wRi]
gi|58535336|gb|EAL59413.1| conserved hypothetical protein [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225592901|gb|ACN95920.1| hypothetical protein WRi_012370 [Wolbachia sp. wRi]
Length = 381
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 11/167 (6%), Positives = 38/167 (22%), Gaps = 11/167 (6%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V V + + + + ++L L+ +
Sbjct: 22 EIVADVNGEPISNLDIEKRINFINSLFGTQS--------VNQKEAKPQVLRELIDEIVII 73
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
+ + ++ + + I LF + K + + + I+ L
Sbjct: 74 NEAQRLNIKLSNEELDNAI---MLFLTQSFKLKANEVDQYIEKHNIDLGILRKQIKCQLL 130
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ ++ + + + + E +
Sbjct: 131 WSKIIEVRIVPFINISDKEINDVKRQTEKPNYLITFQEFIIPDQKDK 177
>gi|46201262|ref|ZP_00208032.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Magnetospirillum
magnetotacticum MS-1]
Length = 273
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 48/136 (35%), Gaps = 6/136 (4%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNEN 541
+V V+T E S L G++F ++ K+ + +
Sbjct: 129 QEEVHARHILVETEESARSIIADL-----NRGQDFGELAKSRSKDTGSGAMGGDLGYFVQ 183
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
+ + F+ V P++ Y V KV + ++ + D+ + + + +
Sbjct: 184 GAMVPEFSTVAFAMRPGEVSKTPVKTQFGYHVIKVEDKRMATIPPYDQAKPVIARQIADE 243
Query: 602 LLDSVIAYLKSQYSVT 617
L + ++ L+ + +
Sbjct: 244 LQEKMVVDLRDKAKIK 259
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 31/243 (12%), Positives = 79/243 (32%), Gaps = 5/243 (2%)
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
V + S++ + Q F + + + A
Sbjct: 31 VANVNGSDIKMSQLAEFGRQMGPQAPYEAVLEVAINNQLVYEQAKRDKLDADPEVKAALH 90
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
I + + +K+ + I+ + ++A Y++ + + E ++ ++ A
Sbjct: 91 RVEIQLMAQALMQKKVRGAITEEAVKARYDQAVKNFQPQEEVHARHILVETEESARSIIA 150
Query: 289 SLKKGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
L +G+ F +LA+ + K LG F + + + F++ +
Sbjct: 151 DLNRGQDFGELAKSRSKDTGSGAMGGDLGYFVQGAMV-PEFSTVAFAMRPGEVSKTPVKT 209
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
FGY + V + + + + + K IA Q+ + V + + +
Sbjct: 210 QFGYHVIKVEDKRMATIPPYDQAKPVIARQIADELQEKMVVDLRDKAKIKRFKPDGTPLD 269
Query: 405 SRR 407
+ +
Sbjct: 270 AAK 272
>gi|42519550|ref|NP_965480.1| peptidylprolyl isomerase [Lactobacillus johnsonii NCC 533]
gi|46396699|sp|P60750|PRSA1_LACJO RecName: Full=Foldase protein prsA 1; Flags: Precursor
gi|41583839|gb|AAS09446.1| protease maturation protein precursor [Lactobacillus johnsonii NCC
533]
gi|329667789|gb|AEB93737.1| protease maturation protein precursor [Lactobacillus johnsonii DPC
6026]
Length = 298
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 8/216 (3%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D K V + V ++ + L +K +
Sbjct: 73 DVTQKQVDKEYNKYKKQYGSQFDSVLEQNGMTASTFKDNLKTNLLTEAALKHIKKITPAQ 132
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---IN 535
++ + + + S A ++ + G +F+ + K T N +
Sbjct: 133 EKKAWKNYQPEVTVQHILVSKKSTAEDVIKQLQDGG-DFKKLAKKYSTDTATKNDAGKLP 191
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISY 593
D+ + + F + P++ Y V K+ +K + K + +
Sbjct: 192 AFDSTDSTLDSSFKTAAFKLKTGEITTTPVKTQYGYHVIKMIKHPAKGTFKEHKKQIDNQ 251
Query: 594 LTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ Q M++D ++ SVIA + + V++ D ++ L
Sbjct: 252 IYQSMSEDQNVMRSVIATVLKRADVSIKDKDLKNVL 287
>gi|322381169|ref|ZP_08055172.1| PrsA-like protein [Paenibacillus larvae subsp. larvae B-3650]
gi|321154745|gb|EFX47016.1| PrsA-like protein [Paenibacillus larvae subsp. larvae B-3650]
Length = 303
Score = 53.3 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/302 (9%), Positives = 85/302 (28%), Gaps = 28/302 (9%)
Query: 5 IRKASRTWVAKI---FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+R W VV+ V F+I+G + + + V +G+ K+ +
Sbjct: 1 MRNIKLLWAVIGGLSLAVVVLVCFVIFGFTG--AASGNGTVVAEIGKTKIRKGDLEQNLI 58
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
G +L+ ++ + + GL+ + E+
Sbjct: 59 THYGS---------------------SVLNQMLDREAIKMEAQSAGLQISDADIDKELKV 97
Query: 122 SPLFHGKDNKFSHDVFVSR-LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ + F + ++R+ + + Y + ++ D+ +
Sbjct: 98 MMQAYESEEVFYQSMKEQLGMSRQEVKDDVYYKLLLEKVATKDIQVSDSEIQDYIQAHPE 157
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSN-AVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ + + + +A S + + A + ++ D
Sbjct: 158 EYAKKREMHLRRVTTKTREQANKVVAAFSKGDDFAKLARDRSIDDYANNGGDLGWVKEDD 217
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+K++ +L+ + + Q ++ + + + +Q
Sbjct: 218 PLTDKQVMKQAKDLKVGQISKPVQTNEGYLIVFLQESKDKGGLDEQTIKETVRKQLALQK 277
Query: 300 AE 301
A
Sbjct: 278 AP 279
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 39/228 (17%), Positives = 84/228 (36%), Gaps = 4/228 (1%)
Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
+ + + + + D + V A S V Q ++ R
Sbjct: 67 NQMLDREAIKMEAQSAGLQISDADIDKELKVMMQAYESEEVFYQSMKEQLGMSRQEVKDD 126
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
+ Y L K I++S+ E+Q + + E+Y + ++ +++A++ +
Sbjct: 127 VYYKLLLEKVATKDIQVSDSEIQDYIQAHPEEYAKKREMHLRRVTTKTREQANKVVAAFS 186
Query: 292 KGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
KG F +LA ++ + LG ++ K G + + + GY
Sbjct: 187 KGDDFAKLARDRSIDDYANNGGDLGWVKEDDPLTDKQVMKQAKDLKVGQISKPVQTNEGY 246
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
+I + K + Q +K+ + Q+ + KA +K+ K+L E
Sbjct: 247 LIVFLQESKDKGGLDEQTIKETVRKQLALQKA-PSIKDLSKKLREKWN 293
>gi|325139171|gb|EGC61717.1| PPIC-type PPIASE domain protein [Neisseria meningitidis ES14902]
Length = 408
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 131 SDGIAAVADNEVITRRRLAEAVSEAKANLPK-------DAQISESELSRQVLMQLVNQSL 183
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 184 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 243
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 244 AEIDAFLEQAQ 254
>gi|325131574|gb|EGC54281.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis M6190]
Length = 405
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 128 SDGIAAVADNEVITRRRLAEAVSEAKANLPK-------DAQISESELSRQVLMQLVNQSL 180
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 181 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 240
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 241 AEIDAFLEQAQ 251
>gi|317153443|ref|YP_004121491.1| hypothetical protein Daes_1733 [Desulfovibrio aespoeensis Aspo-2]
gi|316943694|gb|ADU62745.1| hypothetical protein Daes_1733 [Desulfovibrio aespoeensis Aspo-2]
Length = 372
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 15/177 (8%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
V V L+ G SD + + V V + + S Q + G+V +
Sbjct: 5 FAVFMVFILLAGCSDTVDEIG---IVARVNGEPIYLSQLEFQHDQF--QVETVGGYVPSV 59
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK--------D 129
E+ ++ +IL L+ + Q + + + + + + +
Sbjct: 60 EKLKAEY--GEILTELIVQELVVQELVNQDIGVTDHELLKAEEEVRTDYPEGAFDQMLVE 117
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ +L K + + + R S+ L ++ R
Sbjct: 118 EYIDLKTWRLQLRNHLAMRKFFHQVLRPQIKIDYLEAERYYRDRISDFYLPESLRIL 174
>gi|256003621|ref|ZP_05428610.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum DSM 2360]
gi|281416651|ref|ZP_06247671.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum JW20]
gi|255992412|gb|EEU02505.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum DSM 2360]
gi|281408053|gb|EFB38311.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum JW20]
gi|316939760|gb|ADU73794.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum DSM 1313]
Length = 368
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 83/298 (27%), Gaps = 10/298 (3%)
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
+ T VI+ + + S + + + KV++ + + +
Sbjct: 70 NTTEVINYFSQSYAVETKENFRTDSYSGEAPVEMARKKALDDIVEVKVQQILAKEKGIIE 129
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
+ + E + I Y + K K++ +
Sbjct: 130 STDYREFLKELENENRQRKDALKSNKVVYGPDNYGEIEYFNYSFDNMVSKLKEKLKENEL 189
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT---AEEVSSKANQLVLEYSK- 512
++P+ + R + +++ V T + +++ SKA + E K
Sbjct: 190 SIPEEKLESMY-NLLKDTRFKLPDDIKIQVISIGFTDEKGIINDDLKSKARVKIEEAKKR 248
Query: 513 --EGKNFRDIGKNLGASLLTTNQI--NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
G+ F ++ + + + + + V +
Sbjct: 249 IDNGEPFEEVALDYNPKSGVLEYVFTKEKQMAKDISHPELLDEALKLKPGQVSEIIERST 308
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ G + KD L + + I L Q V +++ L +R
Sbjct: 309 DFVLILCKEKKSTGYLPYKDA-RKQLLDELIEKDYQEYIDKLVEQADVKINEKLYRRI 365
>gi|15893571|ref|NP_346920.1| peptidil-prolyl cis-trans isomerase [Clostridium acetobutylicum
ATCC 824]
gi|15023118|gb|AAK78260.1|AE007541_5 Peptidil-prolyl cis-trans isomerase [Clostridium acetobutylicum
ATCC 824]
gi|325507691|gb|ADZ19327.1| Peptidil-prolyl cis-trans isomerase [Clostridium acetobutylicum EA
2018]
Length = 247
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/202 (15%), Positives = 53/202 (26%), Gaps = 19/202 (9%)
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+G + + A I + + D S Y +
Sbjct: 60 SGIEEQEVVKAQIENARKQILTHASLDKIFSDIVVADSEVEKYYEANKEMFKDP------ 113
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
V V+T E+ ++ KEGK F + + +
Sbjct: 114 ---EKVAAKHILVQTEEDALKIREEI-----KEGKTFEEAAAEYSSCPSKERGGDLGAFT 165
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
+ FS + V P++ Y + KV KD + L Q
Sbjct: 166 RGQMVPEFEEAAFSQEIGEVG-APVKTQFGYHLIKVEGKIEPAQRDFPSVKDAIKNRLLQ 224
Query: 597 MMNKDLLDSVIAYLKSQYSVTV 618
I LK++Y V +
Sbjct: 225 ERQSMKYSWYIDQLKNKYKVEI 246
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 10/111 (9%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ + V Q++ S + ++ + K++LD +VS +
Sbjct: 3 NKVLAVVNGQEITESDLNATINSFPEERRRQF---------LNPEGRKRLLDEIVSFELV 53
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+D G+E + V +I + +A + +
Sbjct: 54 YNDAKDSGIE-EQEVVKAQIENARKQILTHASLDKIFSDIVVADSEVEKYY 103
>gi|182414803|ref|YP_001819869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutus terrae
PB90-1]
gi|177842017|gb|ACB76269.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutus terrae
PB90-1]
Length = 328
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/265 (7%), Positives = 62/265 (23%), Gaps = 11/265 (4%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
D L + V + + + + ++ + L ++
Sbjct: 25 GDNLNLRFANGIAAIVEDKVITVDDVRREIAPLIAQLQREARNEREFNE-KLEQLQDDVI 83
Query: 91 DNLVSGATLDQFIEDI-GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
+L+ + + + +A + F++ L G +
Sbjct: 84 QSLIDRVLIVKEFRKDEKKHIPDSFIDNRLADILSEQFDN---DRSKFLAYLHSRGTTLR 140
Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
EY + + + + + + ++R ++ R +
Sbjct: 141 EYRREVEEDIIYQYMRQEQRKSQSIVSPVRIETFYNENKDRFYQEDGVHLRLIQFSRANG 200
Query: 210 N------AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
A + K + + R + +L+ E+ +
Sbjct: 201 ETDEDLRAKANLVMARIKAGEKFEDLAREYSQDSRRAKGGDWGWQKRSDLKPEFSEPLFS 260
Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQ 288
E+ L E +
Sbjct: 261 LKKGEVSDPIILPEGCFILFAEDRK 285
Score = 45.2 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 4/152 (2%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
E+ ++ L ++ +T E++ +KAN LV+ K G+ F D+ +
Sbjct: 176 NENKDRFYQEDGVHLRLIQFSRANGETDEDLRAKAN-LVMARIKAGEKFEDLAREYSQDS 234
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS---KVGPVQ 585
+ + + +FS V I +++F +
Sbjct: 235 RRAKGGDWGWQKRSDLKPEFSEPLFSLKKGEVSDPIILPEGCFILFAEDRKYAGIQPIDE 294
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+D+ L Q M+++ + + L+ V
Sbjct: 295 VRDEIERVLVQQMSRNSQEHWLERLRRNGYVK 326
>gi|254504552|ref|ZP_05116703.1| PPIC-type PPIASE domain protein [Labrenzia alexandrii DFL-11]
gi|222440623|gb|EEE47302.1| PPIC-type PPIASE domain protein [Labrenzia alexandrii DFL-11]
Length = 282
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/246 (11%), Positives = 72/246 (29%), Gaps = 5/246 (2%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ ++ + + + ++ P + + + +
Sbjct: 29 DVVAKVGDAVITEADIAFAAQDLGQELQRFPAAQWRQLLLDVMIDMELLALAAKNDGLDQ 88
Query: 446 KDDPLSKDHTVALP--DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV---S 500
D + + L +Y+ +I SI D K + + A +
Sbjct: 89 DPDFKKQLEFLELRALRNAYLGQKINASITDADVKTAYDKEFAEFEGPEEINARHILVED 148
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
A + ++ G +F ++ K N + F+
Sbjct: 149 KAAAEALIAELDGGADFAELAKEKSTGPSGPNGGDLGYFAKGQMVPPFEEAAFALEPGSF 208
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
P+E + + KV + + D + L Q + ++ ++ + LK +Y+V + D
Sbjct: 209 TKEPVETQFGWHIIKVEDKRRQEKPALDTVEANLRQQLARERYEARMVELKDEYAVEILD 268
Query: 621 NLIQRY 626
+
Sbjct: 269 EQLANA 274
Score = 43.7 bits (100), Expect = 0.096, Method: Composition-based stats.
Identities = 11/95 (11%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+ + S +L + V VG + + + + + +
Sbjct: 7 ALAVSIMALTLGSASLSAAEPDDVVAKVGDAVITEADIAFAAQDLGQELQR--------- 57
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
+ + +LD ++ L ++ GL+ D
Sbjct: 58 -FPAAQWRQLLLDVMIDMELLALAAKNDGLDQDPD 91
>gi|163746451|ref|ZP_02153809.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Oceanibulbus
indolifex HEL-45]
gi|161380336|gb|EDQ04747.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Oceanibulbus
indolifex HEL-45]
Length = 412
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 45/154 (29%), Gaps = 18/154 (11%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+ + + + + + + V V + + Q IG
Sbjct: 15 GTAALALALV-IGQSAAAQNLFAPVARVNDEAITGYEVQQ-----RQRFMQLIGAPGTDS 68
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
++D+L+ Q +E GLE + + S + F+
Sbjct: 69 --------NSVIDSLIEDRLRGQILEQAGLEVTPDGIRAGMTE----FAGRADLSTEEFL 116
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
L + I+E+ + D + D++ G
Sbjct: 117 KVLGQAQISEETFRDFIVISAAWRDLIRARYNGR 150
>gi|289208891|ref|YP_003460957.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
K90mix]
gi|288944522|gb|ADC72221.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thioalkalivibrio sp.
K90mix]
Length = 289
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/260 (9%), Positives = 84/260 (32%), Gaps = 20/260 (7%)
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG---------- 427
+ E+ L+ + D ++ L +AG D
Sbjct: 25 DEGLPLPDEEASELDTVITDTDDEDTVAIVNDRAITRADLFTYAGMDEDPGLATQGEGVL 84
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
EV ++ Q + DDP + + + ++ + E+V + +
Sbjct: 85 DEVISLELLRQEALKRGLGDDPEIQRILKMVETNLLASMLMERIAEELEISEEDVEAEYE 144
Query: 488 KD--------WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD- 538
+ ++ E A +L+ + +G +F ++ + + + +
Sbjct: 145 RQVEYLRGTEYRARHILVEDEDSARELLAQLD-DGADFAELAEEHSIDPGSAARGGDLGW 203
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
+ + + P+++ + + ++ +++ V D+ + + +++
Sbjct: 204 FTPDGMVPEFAAATEALEPGETTDAPVQSQFGWHLIRLDDTREVEVPPLDEVRAEIIEIL 263
Query: 599 NKDLLDSVIAYLKSQYSVTV 618
+ + L+++ ++ +
Sbjct: 264 ESRAIQEKLEALRAEATIEI 283
Score = 44.8 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 5/121 (4%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS----DI 310
+ + +Y ++ ++ A E L G F +LAEE
Sbjct: 140 EAEYERQVEYLRGTEYRARHILVEDEDSARELLAQLDDGADFAELAEEHSIDPGSAARGG 199
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
LG F+ + + A + +L + FG+ + + + + EV+ +
Sbjct: 200 DLGWFTPDGMV-PEFAAATEALEPGETTDAPVQSQFGWHLIRLDDTREVEVPPLDEVRAE 258
Query: 371 I 371
I
Sbjct: 259 I 259
Score = 41.4 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 15/88 (17%)
Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
+ TV V + + + G + A + +LD
Sbjct: 41 VITDTDDEDTVAIVNDRAITRADLFTY-----------AGMDEDPGLATQG---EGVLDE 86
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIA 120
++S L Q GL D + +
Sbjct: 87 VISLELLRQEALKRGLG-DDPEIQRILK 113
>gi|167465135|ref|ZP_02330224.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
[Paenibacillus larvae subsp. larvae BRL-230010]
Length = 246
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/210 (10%), Positives = 60/210 (28%), Gaps = 27/210 (12%)
Query: 5 IRKASRTWVAKI---FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+R W VV+ V F+I+G + + + V +G+ K+ +
Sbjct: 1 MRNIKLLWAVIGGLSLAVVVLVCFVIFGFTG--AASGNGTVVAEIGKTKIRKGDLEQNLI 58
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
G +L+ ++ + + GL+ + E+
Sbjct: 59 THYGS---------------------SVLNQMLDREAIKMEAQSAGLQISDADIDKELKV 97
Query: 122 SPLFHGKDNKFSHDVFVSR-LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ + F + ++R+ + + Y + ++ D+ +
Sbjct: 98 MMQAYESEEVFYQSMKEQLGMSRQEVKDDVYYKLLLEKVATKDIQVSDSEIQDYIQAHPE 157
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ + + + +A S
Sbjct: 158 EYAKKREMHLRRVTTKTREQANKVVAAFSK 187
>gi|154250196|ref|YP_001411021.1| hypothetical protein Fnod_1521 [Fervidobacterium nodosum Rt17-B1]
gi|154154132|gb|ABS61364.1| hypothetical protein Fnod_1521 [Fervidobacterium nodosum Rt17-B1]
Length = 328
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/232 (12%), Positives = 65/232 (28%), Gaps = 18/232 (7%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
IFLV+L F+ V V + + + + ++ +
Sbjct: 6 IFLVLLISFFVFA----------QQEIVAVVNGRSITMDEWNREANVQKLLLEIQNSNET 55
Query: 76 NSERARSVG--------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+ + K+LD L+ QF E + ++ D V ++
Sbjct: 56 FYQILMTTQEGLVLIEKYKLKVLDTLIRKIAFIQFAESLKVQPDPQTVKNDVDNEIKKML 115
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
D K + L + G+ + E + + V N + + + +
Sbjct: 116 VDLKMTETQLNDYLMQLGMGQLEDFRQKLYLQRTYSLSLANVYTYYLKNATVSEEEIKAY 175
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
++ + ++ I + + + + E Y L
Sbjct: 176 YEKNKAKYTVPTQYDLLIFKAKDKAMADSIRQDVAKNISVEEISKKYNLSPH 227
>gi|85374605|ref|YP_458667.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
gi|84787688|gb|ABC63870.1| peptidyl-prolyl isomerase [Erythrobacter litoralis HTCC2594]
Length = 473
Score = 52.9 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/147 (10%), Positives = 38/147 (25%), Gaps = 14/147 (9%)
Query: 29 GLSDALFSVSGSST-----VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV 83
G+ D + S+ V + + + + ++ V
Sbjct: 64 GIPDNFSLLGESNPNVRKATAVVNGSVITGTDIDHRTALVVASAQGEL------AEEEMV 117
Query: 84 GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
+ ++L NL+ Q + V A+ ++ D + L
Sbjct: 118 RVRMQVLRNLIDETLQVQEAAAQEINITADEVNQRYAQLAA---QNFGNQPDAMDAYLLS 174
Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVG 170
G + L+ ++ +
Sbjct: 175 IGSSPASLKRQIQGELAWQRLLRRNIA 201
>gi|285808214|gb|ADC35748.1| hypothetical protein [uncultured bacterium 293]
Length = 250
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 52/166 (31%), Gaps = 7/166 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++ E+ A + ++ + +++A + K+ K+F + +++
Sbjct: 83 VKVSETEIADYARDHTAELGRPEEVTLRQILVPTANEARDVQRRLQKDPKSFELLAQSVS 142
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG--- 582
+ + F+ + L V ++
Sbjct: 143 RGPEAGKGGLMGSFSAGQLPPELEAAAFALKPGETSGIVV-TPLGQHVLRLEARTAAHPF 201
Query: 583 -PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
P + +D+ + L + + ++A L ++ V + Q L
Sbjct: 202 SPEETRDRVRALLREKKSSLAQREIVAGLMARAKV--NHEAAQSSL 245
>gi|325970754|ref|YP_004246945.1| hypothetical protein SpiBuddy_0924 [Spirochaeta sp. Buddy]
gi|324025992|gb|ADY12751.1| hypothetical protein SpiBuddy_0924 [Spirochaeta sp. Buddy]
Length = 536
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 5/138 (3%)
Query: 6 RKASRTWVAK-IFLVVLFVPFLIWGLSDALFSVSGSSTV--VSVGRQKVPFSSFINSWKQ 62
RK + WV + L+++ V F++ +A S+ + G+Q++ + + N +
Sbjct: 54 RKITIGWVLGMLILILIAVSFVLAPAIEAFVGKRTSNGIVFGKYGKQEIKYV-YGNYFYD 112
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
++ + + + + K D+ V +++ G+ A V I S
Sbjct: 113 QVQNYANQYKSSGTDQTQALYQIWKSAYDSTVIFTAINELATKAGIIAADDVVNRAIINS 172
Query: 123 PLFHGKDNKFSHDVFVSR 140
+ KD KF + +
Sbjct: 173 GAY-NKDGKFDVETYQKA 189
>gi|284097541|ref|ZP_06385612.1| secreted protein [Candidatus Poribacteria sp. WGA-A3]
gi|283830948|gb|EFC34987.1| secreted protein [Candidatus Poribacteria sp. WGA-A3]
Length = 178
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/149 (11%), Positives = 48/149 (32%), Gaps = 9/149 (6%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ L + S + V + S + + + + + +++
Sbjct: 5 ITFLILFCIGGNVYAQTLIDSIIAVVNEDAITRSELEDELR--IATVFRIRTAPISTTAE 62
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADH--GRVWGEIARSPLFHGKDNKFSHDVFV 138
+ G L+ +++ + Q E +G+ +V +IA + + F + +
Sbjct: 63 QRTG-----LNTIINRKFVLQEAERLGIIVTERNTQVAAKIAEISAKYASETVFQNVLQE 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGM 167
++L +E + + Y R
Sbjct: 118 AQLEKEAVEAQVYDQLIYDEFFRRIFSMP 146
>gi|161504788|ref|YP_001571900.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160866135|gb|ABX22758.1| hypothetical protein SARI_02912 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 428
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
N + D SRLA +G+N Y + K + ++V V
Sbjct: 107 NNMTLDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 17/205 (8%), Positives = 50/205 (24%), Gaps = 6/205 (2%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D I + + + G ++ + +
Sbjct: 222 DQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSPNIS 281
Query: 479 LEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ EV + + T ++ K ++ + F K + NQ +
Sbjct: 282 VTEVHARHILLKPSPIMTDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDL 341
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISY 593
F + + P+ + + + ++ +KD+
Sbjct: 342 GWATPDIFDPAFRDALTKLHKGQM-SAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRM 400
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618
L + + + ++ V +
Sbjct: 401 LMNRKFSEEAATWMQEQRASAYVKI 425
>gi|332185309|ref|ZP_08387058.1| PPIC-type PPIASE domain protein [Sphingomonas sp. S17]
gi|332015033|gb|EGI57089.1| PPIC-type PPIASE domain protein [Sphingomonas sp. S17]
Length = 475
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/191 (9%), Positives = 44/191 (23%), Gaps = 9/191 (4%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + ++ ++ E L +IL L+ Q
Sbjct: 85 AIVNDTVLTGTDLDQRMAL---AMALNNVTKLSPEDRDR--LRMQILRQLIDETLQIQEA 139
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + + AR GK + L + G +E+ L+
Sbjct: 140 KSAEITVTAPEIDQAYARFSQQFGKT----PTQMTAFLRQVGSSERSMRRQIEGELAWNR 195
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
+ V A R E + + + + +
Sbjct: 196 YLRKRVEPFINVGDEEVNAIRARLEAAKGTEEYNLKEIFLSANEATQQQVFANARQIIAE 255
Query: 224 YRAPEYKRISY 234
+ + +
Sbjct: 256 IQKGQQPFEYF 266
>gi|121591689|ref|ZP_01678920.1| chaperone SurA [Vibrio cholerae 2740-80]
gi|121546451|gb|EAX56679.1| chaperone SurA [Vibrio cholerae 2740-80]
Length = 133
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + S ++ K Q + L +++L+ L+
Sbjct: 28 DSVAVIVNSGVILQSDVDSALKTIKANAKQNKQP-----LPQETVLREQVLEKLIIDTLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
Q + IG++ D R+ I + + +
Sbjct: 83 QQEADRIGVKIDDNRLNEAIKEIAKNNQQTQE 114
>gi|91788447|ref|YP_549399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
JS666]
gi|91697672|gb|ABE44501.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas sp.
JS666]
Length = 261
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 2/131 (1%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGY 546
K++K E ++A ++ K GK F DI K + + +
Sbjct: 132 KEYKARHILVEKEAEAKAIIASLKKGGK-FEDIAKKQSKDPGSGAKGGDLDWANPSGYVP 190
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ + + P+++ Y V +V + + + ++ + Q M + L +
Sbjct: 191 EFSEALLKLNKGQLTDAPVKSQFGYHVIRVDDIRNAQLPSFEEVKPQIAQQMQQQKLATF 250
Query: 607 IAYLKSQYSVT 617
L+ + +
Sbjct: 251 QEDLRKKAKIE 261
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + GL + + V V + VP + + L + G V +
Sbjct: 5 FLLATAVAGLLAMGAQGAFAQNVAIVNGKAVPKARLDS-----LAQQIARSGRPVTPDM- 58
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
L +++ ++ Q E GL
Sbjct: 59 -ENQLREEV----IAREVFMQEAEKQGLSGTDD 86
Score = 37.1 bits (83), Expect = 8.9, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLA 326
++ + EA SLKKG KF +A++Q K + G P +
Sbjct: 134 YKARHILVEKEAEAKAIIASLKKGGKFEDIAKKQSKDPGSGAKGGDLDWANPSGYVPEFS 193
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
+++ L K + FGY + V +I+ + SF+EVK IA QM+ K + ++
Sbjct: 194 EALLKLNKGQLTDAPVKSQFGYHVIRVDDIRNAQLPSFEEVKPQIAQQMQQQKLATFQED 253
Query: 387 DYKR 390
K+
Sbjct: 254 LRKK 257
>gi|110598304|ref|ZP_01386579.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
ferrooxidans DSM 13031]
gi|110340112|gb|EAT58612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
ferrooxidans DSM 13031]
Length = 438
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/202 (10%), Positives = 53/202 (26%), Gaps = 12/202 (5%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ K L+ L + ++ ++ V VGR+ + S +
Sbjct: 2 KKISGKAVLLFLA---GLASITTPSYAEVADRIVAVVGREVILKSEIDSRALMARLQ--- 55
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ E A+ GL ++ILD L+ + + ++ D +
Sbjct: 56 ------SPELAKDTGLSRRILDGLIEQQIILSKAKIDSVKVDENAISATAGDRFKQLRAR 109
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
++ E + G++ ++ + E
Sbjct: 110 FASKEEMETRFGKTLPAIRDEIRTEIRNQELIQTLRRKRSAGVKVTSGEVMDYYNANREK 169
Query: 190 RSVDYIVLNNRHVPAIADPSNA 211
S+ + + S
Sbjct: 170 FSLIPEGVKVSQIMKYPAVSAD 191
>gi|94985701|ref|YP_605065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
geothermalis DSM 11300]
gi|94555982|gb|ABF45896.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
geothermalis DSM 11300]
Length = 635
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 55/456 (12%), Positives = 131/456 (28%), Gaps = 51/456 (11%)
Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
+R +++ ++ ++ E + YE + E + S ++V ++ +A
Sbjct: 134 FRQQVRDQLAVQRKSEEIQQAAPPATDAEARLYYELHPESFQSDARIVGREIVVNDKAKA 193
Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLS--DISLGSFSKEY------IPDVSLADSIFSLAKK 335
+ + ++ G F QLA + + +LG + +
Sbjct: 194 EALLKQVRGGADFAQLARQNSSEFAERGGALGPLENGRPRPVARVALPDEVAAAAFALTG 253
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK----ASEKVKEDYKRL 391
G T VI + I V P T F + K D + K + + + +
Sbjct: 254 GGVTDVIASGGKFYIVKVEQYLPPQTKPFADAKADAVTAVNRQKKDAAVEQWLTNLERDV 313
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI-----------------P 434
+ + E + ++P D + V+ ++V + P
Sbjct: 314 KIEVLDPAWKTENPTVASVAGQNIPYSDVVAQVVQNQQVTNLVSQMGDQAAQLINSILKP 373
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMW----------VQIKESIPARDRKLEEVLT 484
Q L + + + + + + VQ+ ++ +
Sbjct: 374 QIVQQLIQSYAAPKIVQQKNLALTGTRQELAAGLVAYGARNVQVTDADIQKFYLQNPQQF 433
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
+ + + KA ++ +G K
Sbjct: 434 ETPASATVSEASFADRDKALAFRQSWNGQGDFTAAATKAGATVSERGEVRPSTPETPGTL 493
Query: 545 GYDGISQVFSGPV-----EMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLT 595
+ VF+ E ++ G YVV VT+ + +D+ L
Sbjct: 494 AQPVEAAVFTAKTLRPAGEGSLSDVVKVGNRYVVAYVTDLQRASVQPLAAVRDQIRQQLL 553
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
++ + +A + + +Q+ L ++
Sbjct: 554 TQKREEAGQAYLAQQVAALKPVNN---LQKVLADQQ 586
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/230 (7%), Positives = 54/230 (23%), Gaps = 24/230 (10%)
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
I + D + K ++ + + + L+ +
Sbjct: 91 AKDIKVSRADVNAEVQKVRQANNLTDNKAWTDALQSA--GLTDATFRQQVRDQLAVQRKS 148
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVS----------SKANQLVLEYSKEGKNFRD 519
E I + + + + + +L+ + G +F
Sbjct: 149 EEIQQAAPPATDAEARLYYELHPESFQSDARIVGREIVVNDKAKAEALLKQVRGGADFAQ 208
Query: 520 IGKNLGASLLTTNQI-------NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
+ + + + + F+ V I +G +
Sbjct: 209 LARQNSSEFAERGGALGPLENGRPRPVARVALPDEVAAAAFALTGGGV-TDVIASGGKFY 267
Query: 573 VFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ KV K ++ + + ++ + L+ + V
Sbjct: 268 IVKVEQYLPPQTKPFADAKADAVTAVNRQKKDAAVEQWLTNLERDVKIEV 317
Score = 41.0 bits (93), Expect = 0.63, Method: Composition-based stats.
Identities = 18/187 (9%), Positives = 48/187 (25%), Gaps = 3/187 (1%)
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRRE 408
V++ + + +++AS ++ + + +
Sbjct: 413 RNVQVTDADIQKFYLQNPQQFETPASATVSEASFADRDKALAFRQSWNGQGDFTAAATKA 472
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+ V + + G P + + + V Y+ +
Sbjct: 473 GATVSERGEVRPSTPETPGTLAQ--PVEAAVFTAKTLRPAGEGSLSDVVKVGNRYVVAYV 530
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+ A + L V +++ T K E + Q V K N + + + +
Sbjct: 531 TDLQRASVQPLAAVRDQIRQQLLTQKREEAGQAYLAQQVAAL-KPVNNLQKVLADQQKRV 589
Query: 529 LTTNQIN 535
Sbjct: 590 AAEAPKT 596
>gi|157828738|ref|YP_001494980.1| protein export protein prsA precursor [Rickettsia rickettsii str.
'Sheila Smith']
gi|157801219|gb|ABV76472.1| protein export protein prsA precursor [Rickettsia rickettsii str.
'Sheila Smith']
Length = 282
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 6/161 (3%)
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+Y+ I + + + K+ K + +AN + + SK G NF +
Sbjct: 113 NYIKSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANDIKTKLSKGG-NFTKLA 171
Query: 522 KNLGASLLTTNQINRMD----NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
+ L + + + N+ + + F+ V V P++ + + KV
Sbjct: 172 EELSLDKASASNGGVIGYILLNQPGQLVPEFEKKAFALKVNEVST-PVKTDFGWHIIKVL 230
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K P+ K++ + ++ ++L IA L+++ +V +
Sbjct: 231 EKKPVPIPTKEEAKVTIDNILAAEILKKYIADLEAKANVKI 271
>gi|322834453|ref|YP_004214480.1| SurA domain protein [Rahnella sp. Y9602]
gi|321169654|gb|ADW75353.1| SurA domain protein [Rahnella sp. Y9602]
Length = 431
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 51/367 (13%), Positives = 104/367 (28%), Gaps = 58/367 (15%)
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +ILD L+ Q +G+ V IA + N S D SR
Sbjct: 62 DDATLRHQILDRLIMDQIQLQMATRMGITPTDQDVDKAIAGI----AQQNNISVDQLRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGM--RPSNLLLDQAKRFYFENRSVDYIVLN 198
LA +G+N Y K + ++V V + AK+ +N S L+
Sbjct: 118 LAYDGMNYSTYRTQIRKEMIISEVRNSEVRRRVTILPQEVDQLAKQVAAQNGSGAEFNLS 177
Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
+ +P +P+ + + K L + + + + + +
Sbjct: 178 HILLPLPENPTQDQVDSAEQLAKKIVADLNNGADFGKLAITYSADSQALKGGNMGWGKLQ 237
Query: 259 KNKEKYFS------------------------------------PEIRTVEQLVFPNQKE 282
+ + ++
Sbjct: 238 ELPSLFAQALSTAQKGQVIGPIRSGVGFHILKVNDIRGDNKTVSVTEVHARHILLKPSVV 297
Query: 283 ADEAFQSLKKGKKFIQ--------------LAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
+A K + L+++ G + LG S + D + D+
Sbjct: 298 MTDAQARAKLEQVAADIKSGKATFADEAKQLSQDPGSANQGGDLGWASP-DMYDPAFRDA 356
Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
+ KKG+ + +H SFG+ + + + + + ++ A E
Sbjct: 357 L-MNLKKGEISAPVHSSFGWHLIQLIDTRQVDKTDAAQKERAYRMLFNRKFAEEAQTWMQ 415
Query: 389 KRLEEFL 395
++ E
Sbjct: 416 EQRAEAY 422
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 19/206 (9%), Positives = 57/206 (27%), Gaps = 8/206 (3%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI-PARDR 477
D + L + + G + +++ + +
Sbjct: 222 DSQALKGGNMGWGKLQELPSLFAQALSTAQKGQVIGPIRSGVG-FHILKVNDIRGDNKTV 280
Query: 478 KLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ EV + V T + +K Q+ + F D K L + NQ
Sbjct: 281 SVTEVHARHILLKPSVVMTDAQARAKLEQVAADIKSGKATFADEAKQLSQDPGSANQGGD 340
Query: 537 MD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFIS 592
+ + + + + P+ + + + ++ + +K++
Sbjct: 341 LGWASPDMYDPAFRDALMNLKKGEI-SAPVHSSFGWHLIQLIDTRQVDKTDAAQKERAYR 399
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTV 618
L + + + +++ V +
Sbjct: 400 MLFNRKFAEEAQTWMQEQRAEAYVKI 425
>gi|320172859|gb|EFW48091.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella dysenteriae CDC
74-1112]
Length = 428
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNHEVRRRIT 151
Score = 44.8 bits (103), Expect = 0.046, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 91/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNHEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|239930810|ref|ZP_04687763.1| lipoprotein [Streptomyces ghanaensis ATCC 14672]
gi|291439175|ref|ZP_06578565.1| lipoprotein [Streptomyces ghanaensis ATCC 14672]
gi|291342070|gb|EFE69026.1| lipoprotein [Streptomyces ghanaensis ATCC 14672]
Length = 215
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 36/139 (25%), Gaps = 6/139 (4%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGF--VVNSERARSVGLDKKILDNLVSGATL 99
VG Q++ S + + + AR+ L + L +V L
Sbjct: 33 AAAVVGDQRITVSQLEDRVSEVRAAQRAAVPDEAQYAQAIARTGSLTRDTLHGMVLDRVL 92
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
D G+ I + + + + + L + G+ + ++ L
Sbjct: 93 QHAARDAGVTVTPRE----IQQMRSGLEEQAGGAEALEAAWLQQYGVPPQRLDENLRLQL 148
Query: 160 SRTDVVGMFVGGMRPSNLL 178
+
Sbjct: 149 EAQKLAQRLGTETGRPEFW 167
>gi|316985214|gb|EFV64166.1| PPIC-type PPIASE domain protein [Neisseria meningitidis H44/76]
Length = 359
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 82 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 134
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 135 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 194
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 195 AEIDAFLEQAQ 205
>gi|224825282|ref|ZP_03698387.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
2002]
gi|224602203|gb|EEG08381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
2002]
Length = 264
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 53/151 (35%), Gaps = 2/151 (1%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ ++ K+ + ++A++++ + K+GK F D+ K L
Sbjct: 115 VTDAKIKARYDQLASQQAGSKEVHARQIMVASEAEASKVIADL-KKGKKFEDLAKTLSKD 173
Query: 528 LLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
M + P ++GL + VFK+ + + +
Sbjct: 174 PAAKQSGGDMGWGNLSQMEPKLAEALKGLGKGQSSSQPFKSGLGWHVFKIEDIRDAKLPP 233
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + + + + ++ + + L+S+ +
Sbjct: 234 LNEVKAQIARQIQQEDVAKAVGELRSKAKIQ 264
Score = 44.8 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 13/99 (13%)
Query: 20 VLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+ + F+ G+ + V +V + + + N +
Sbjct: 6 LAALLFVAAIGIPGLA----AAQAVATVNGVAIDKKDVDEAVT--------MLSKNSNGK 53
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
S L ++I +NL++ + Q GLE V
Sbjct: 54 VQDSPALREQIKENLINKQLILQEATRRGLEKQPDFVER 92
>gi|161870782|ref|YP_001599955.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
gi|161596335|gb|ABX73995.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis 053442]
Length = 353
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 76 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 128
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 129 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 188
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 189 AEIDAFLEQAQ 199
>gi|192358925|ref|YP_001981367.1| peptidyl-prolyl cis-trans isomerase SurA [Cellvibrio japonicus
Ueda107]
gi|190685090|gb|ACE82768.1| peptidyl-prolyl cis-trans isomerase SurA [Cellvibrio japonicus
Ueda107]
Length = 437
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/359 (11%), Positives = 92/359 (25%), Gaps = 61/359 (16%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
S + + + + E L+K+IL+ L+ + + D
Sbjct: 51 ESELNERKASIMERLQGQY-QQLPPEDV----LNKQILEQLIVERIELGLAKRYDISIDE 105
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
+ IAR + N+ S + L R+G++ + K L+ + V
Sbjct: 106 AEIDQAIARI----AQKNQVSAAALEADLKRQGLDMSGLREQLRKDLTINQLQQGVVNSR 161
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE---- 228
+ + + + H+ S + + N +
Sbjct: 162 IKISEQDIDNFLASSDGKYATSPDYHIGHILISVSSSADAEMVEQAENQANDIYKKLQGG 221
Query: 229 ---------------------------------YKRISYILFDVHEKEKKIEISNDELQA 255
+ L + + +
Sbjct: 222 ADFAQMAISYSKDQAALQGGDIGWRKLAQLPELFGNEMMKLSPGQVSKPFRSGAGFHILK 281
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK---------KGKKFIQLAEEQGKS 306
E+ E ++ + D+ K KG+ F +LA E +
Sbjct: 282 NIEQRGGGAQMVEQTHARHILVKTSEIMDDRQAREKLLGLRERILKGEDFAKLARENSED 341
Query: 307 L----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
S LG + + + +++ GD + FG+ I V + +
Sbjct: 342 TGSMLSGGDLGWSTPG-MFVPAFEEAMAQTG-IGDISRPFKSQFGWHILQVLERRQTDM 398
>gi|108803753|ref|YP_643690.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrobacter
xylanophilus DSM 9941]
gi|108764996|gb|ABG03878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rubrobacter
xylanophilus DSM 9941]
Length = 354
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/156 (15%), Positives = 51/156 (32%), Gaps = 11/156 (7%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG-FVVNSERARSVGLDKKILDNLVSG 96
SG+ V +V +++L ++ ++ G + + + +I+ LV+
Sbjct: 47 SGAQKVAVFEGGEVTQGQ----VQEQLDLLGRQSGLGEITPDSPQYQSAIAQIMPQLVTQ 102
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS------HDVFVSRLAREGINEKE 150
+ + G+ V EI R + + + F L + GI E +
Sbjct: 103 EIAQAYAREHGITVTEREVEREIGRIKDQLVRQARAQGQDIGREEAFRRALEQAGITEAQ 162
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ + L V G RP+ +
Sbjct: 163 LREQIREQLPVQKVQERVAGDARPTEEEVRDYYEEN 198
>gi|260591262|ref|ZP_05856720.1| putative peptidyl-prolyl cis-trans isomerase [Prevotella veroralis
F0319]
gi|260537127|gb|EEX19744.1| putative peptidyl-prolyl cis-trans isomerase [Prevotella veroralis
F0319]
Length = 474
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/336 (11%), Positives = 87/336 (25%), Gaps = 35/336 (10%)
Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
G+ + + ++ + + L K + K G+ + +GY I
Sbjct: 165 NFGELAKKYSADRESAQNGGELPLLQKGQTVQE--FEHAMLALKPGEMSKPTLSPYGYHI 222
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ + + +MR + K+ +++ T
Sbjct: 223 IKMIAHEGLAPYDSLHARILQFIEMRGLRDQIVDKKLDSLVQQAGKGVTREQ----LLDK 278
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+L D K++ + + L K +Y K+
Sbjct: 279 QLAELEEKDANLKNLIREYYDGL------LMVEMSNRMVWDKASADVTGLENYFHKHRKQ 332
Query: 471 SIPARDRKLE---EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
R V + ++ N ++ +
Sbjct: 333 YKWTEPRFKGIAYHVKNQADVEAVKDCVKRLPFAQWNDVLRKTFNADSTL---------R 383
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ I R + + QVF V + + G +Y K+ +
Sbjct: 384 IRVEKGIFRKGDND-----LVDKQVFGMSVPVKEMKDFPIGATY------GKKLKAPESL 432
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
D + + K+L + L+ +Y V V ++
Sbjct: 433 DDVRALVVSDYQKELEKKWVDSLRKKYKVVVDKAVL 468
>gi|319779226|ref|YP_004130139.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Taylorella
equigenitalis MCE9]
gi|317109250|gb|ADU91996.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Taylorella
equigenitalis MCE9]
Length = 258
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/230 (9%), Positives = 66/230 (28%), Gaps = 15/230 (6%)
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
++ I + + D + I + + + +
Sbjct: 41 FKDAQITAEQKKGILEDLVTREVLIQEAKKQKIDQDPQVAKQIEFSREQILTTALLSKYI 100
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT-DVKKDWKTVKTAEEVSSKANQLVLE 509
K+ IK+ ++ + L +V +V+ + +A +L +
Sbjct: 101 EKNPVKEEE--------IKKLYDSQIKALGDVKQYNVRHILVKDE------DRAKELYQQ 146
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
+ +F + K T + + ++ V P+++
Sbjct: 147 LVDKKIDFAETAKKESIDQGTASGGGVLGWHPSSNFVPQFAKAVEEAKIGVLTEPVKSDF 206
Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
Y + V + + P+ + + ++ + ++ LK + + +
Sbjct: 207 GYHLILVDDIRPTPLPSFEASKREIVNALSLEKVNKYTEELKKKAKIKTN 256
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 13/80 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V +V + F K + +E+ K IL++LV+ L
Sbjct: 18 QNVATVNGVNITNQEFEEVTKAIFKDAQ------ITAEQ------KKGILEDLVTREVLI 65
Query: 101 QFIEDIGLEADHGRVWGEIA 120
Q + ++ +V +I
Sbjct: 66 QEAKKQKID-QDPQVAKQIE 84
>gi|187477572|ref|YP_785596.1| protein foldase [Bordetella avium 197N]
gi|115422158|emb|CAJ48682.1| putative protein foldase [Bordetella avium 197N]
Length = 258
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/217 (11%), Positives = 60/217 (27%), Gaps = 11/217 (5%)
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP-DGSYMWVQIKE 470
+ D + K+ G + + L G + + +
Sbjct: 42 LVTQGATDSPQLRDQVKQEMINRQVFVQAAEKQGIAKQVDTQTEIELARQGILVRALMAD 101
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEV---------SSKANQLVLEYSKEGKNFRDIG 521
+ EV + +K K +E AN L+ + F D
Sbjct: 102 YLKKHPVTDAEVKAEYEKIKKEQAGKQEYDVRHILVEDEKTANDLLAQIKSGKLKFEDAA 161
Query: 522 KNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
K + + + + + + P++ + + + +++
Sbjct: 162 KKYSKDPGSAERGGDLGWAPASNYVPPFADAITKLKKGEIADKPVQTQFGWHIIQEKDAR 221
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
D+ S L +MM + L++ L+ + V
Sbjct: 222 AVEFPPLDQVRSQLEEMMRQQKLNAFQKELREKAKVQ 258
Score = 38.7 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V +V + + S + K V S L ++ +++
Sbjct: 20 QNVATVNGKAISQKSVDDFVKLL-----------VTQGATDSPQLRDQVKQEMINRQVFV 68
Query: 101 QFIEDIGL 108
Q E G+
Sbjct: 69 QAAEKQGI 76
>gi|194335718|ref|YP_002017512.1| hypothetical protein Ppha_0584 [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308195|gb|ACF42895.1| conserved hypothetical protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 129
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 9/87 (10%)
Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86
I G S S V ++ +++ SE +
Sbjct: 14 IAGCSPHAGDGSDGRVAAVVNGVEITQREVDFLYQRASA--------PGASESVKRDQ-R 64
Query: 87 KKILDNLVSGATLDQFIEDIGLEADHG 113
+ IL LV L Q + L+
Sbjct: 65 RSILAGLVRAELLAQQAAKMKLDQSPE 91
>gi|323157883|gb|EFZ43986.1| chaperone surA [Escherichia coli EPECa14]
Length = 356
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
>gi|189423768|ref|YP_001950945.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
SZ]
gi|189420027|gb|ACD94425.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
SZ]
Length = 305
Score = 52.9 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 48/165 (29%), Gaps = 13/165 (7%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS--------SKANQLVLEYSKEGKNF 517
K+ +E+ +++ K E++ + Q +LE K+G NF
Sbjct: 118 YLKKKVEAESKISDDELKKFYEQNLDKFKAGEQIRASHILVKSEQEAQSILEQLKKGANF 177
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
++ K A + F + + Y + K+T
Sbjct: 178 EELAKTKSADSSAAKGGDLGWFGKGNMVPAFEKAAFGLKEGQLSGIVKSD-FGYHIIKLT 236
Query: 578 NSKV----GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + K++ + + + + LK + +
Sbjct: 237 GKRAAGTRPLDEVKEQIKGAIMPQKQQQVFMKLKEDLKKGAKIEL 281
Score = 46.0 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 10/83 (12%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ +V K+ F K I A + K+++D LV +
Sbjct: 38 KVIATVNGAKITSEDFDREVKALPEYIRAM---------ADTPQGKKEMIDTLVMRELIL 88
Query: 101 QFIEDIGLEADHGRVWGEIARSP 123
Q G++ + ++A
Sbjct: 89 QQAAKDGVDKG-KEIEEKLAELK 110
>gi|325205366|gb|ADZ00819.1| surA/PPIASE domain protein [Neisseria meningitidis M04-240196]
Length = 387
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 110 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 162
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 163 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 222
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 223 AEIDAFLEQAQ 233
>gi|325203397|gb|ADY98850.1| PPIC-type PPIASE domain protein [Neisseria meningitidis M01-240355]
Length = 366
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 89 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 141
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 142 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 201
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 202 AEIDAFLEQAQ 212
>gi|325199485|gb|ADY94940.1| PPIC-type PPIASE domain protein [Neisseria meningitidis H44/76]
Length = 360
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 83 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 135
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 136 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 195
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 196 AEIDAFLEQAQ 206
>gi|325197566|gb|ADY93022.1| PPIC-type PPIASE domain protein [Neisseria meningitidis G2136]
Length = 360
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 83 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 135
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 136 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 195
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 196 AEIDAFLEQAQ 206
>gi|325145275|gb|EGC67554.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis
M01-240013]
Length = 369
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 92 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 144
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 145 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 204
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 205 AEIDAFLEQAQ 215
>gi|325143121|gb|EGC65468.1| PPIC-type PPIASE domain protein [Neisseria meningitidis 961-5945]
Length = 363
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 86 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 138
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 139 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 198
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 199 AEIDAFLEQAQ 209
>gi|325141118|gb|EGC63621.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis CU385]
Length = 357
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 80 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 132
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 133 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 192
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 193 AEIDAFLEQAQ 203
>gi|325135085|gb|EGC57713.1| PPIC-type PPIASE domain protein [Neisseria meningitidis M13399]
Length = 363
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 86 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 138
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 139 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 198
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 199 AEIDAFLEQAQ 209
>gi|325128991|gb|EGC51842.1| surA/PPIASE domain protein [Neisseria meningitidis N1568]
Length = 390
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 113 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 165
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 166 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 225
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 226 AEIDAFLEQAQ 236
>gi|261391812|emb|CAX49267.1| putative peptidylprolyl isomerase (peptidyl-prolyl cis-trans
isomerase; PPIase; rotamase; cyclophilin; FKBP65)
[Neisseria meningitidis 8013]
Length = 354
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 77 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 129
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 130 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 189
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 190 AEIDAFLEQAQ 200
>gi|254674145|emb|CBA09929.1| PPIC-type PPIASE domain protein [Neisseria meningitidis alpha275]
Length = 378
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 101 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 153
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 154 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 213
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 214 AEIDAFLEQAQ 224
>gi|15676205|ref|NP_273337.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis MC58]
gi|7225507|gb|AAF40735.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis MC58]
Length = 348
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 36/131 (27%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 71 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 123
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P D + +A + + +
Sbjct: 124 IVQAGKRRNIQASEAEIDAVVAKNPALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 183
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 184 AEIDAFLEQAQ 194
>gi|313675959|ref|YP_004053955.1| ppic-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
DSM 4126]
gi|312942657|gb|ADR21847.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Marivirga tractuosa
DSM 4126]
Length = 449
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/500 (8%), Positives = 122/500 (24%), Gaps = 80/500 (16%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
I + FL + S + V + S ++K L Q+
Sbjct: 8 ILTFFTSLAFLFAPIWVEAQSEVKTVDKIIAKVDNYIILESDLALAYKDRLSRGGQQSAE 67
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
++L++L+ + E + +V ++
Sbjct: 68 G-----------RCEVLESLIVNKLMLAKAEIDSVTVLESQVDAQLEN------------ 104
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + L + + +
Sbjct: 105 ----------------------RMKMMVQQIGSEEKIEEYYGKSLDEFKVEIRDDVKEQM 142
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
I R + + + + +F+ + ++
Sbjct: 143 IIGEMQRTITQDLEVTPKQVQNFFDNIPKDSLPFYSTQVQVGQIVKKP------------ 190
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
+ KE + E+++ E S + G K S ++G
Sbjct: 191 -TMSREAKENIKARLNGLRERILEGENFEDIARLYSQEPGAK-----------QSGGNIG 238
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
F + + ++ K G+ + + FG+ I + + + + + +
Sbjct: 239 YFERGQL--APEYEATALRLKPGEISKPVETDFGFHIIELLDRRGNEFNTRHILILPKFT 296
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ + K+ + + + ++ + + + G ++
Sbjct: 297 KRDMEKSVQF---LDSIRNLIIKDSITFEKAAAEYSDDMNTSSSGGYFIESEAGGTKISV 353
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGS----YMWVQIKESIPARDRKLEEVLTDVKKD 489
+ +F + S + + K+ I + + +K+
Sbjct: 354 DELDPNIFFTIDTMEVGSITKPIIFRQQDRSEAVRIIYFKDKIRPHRADIRKDYQKIKQA 413
Query: 490 WKTVKTAEEVSSKANQLVLE 509
K +E+++ E
Sbjct: 414 ALNKKKSEKLAKWFQDSKSE 433
>gi|255656245|ref|ZP_05401654.1| putative protein export chaperone [Clostridium difficile QCD-23m63]
Length = 140
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 46/124 (37%), Gaps = 4/124 (3%)
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
E+ +A +++ + ++ G++F + K + + F+
Sbjct: 11 KKTELKKEAEEIL-KKAQAGEDFATLAKKYSEDSSAESGGDLGFFGKGQMVESFEKAAFA 69
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
V +E+ Y + K T+ K P +E S L + + +I LK +Y
Sbjct: 70 LKKGEVSNKLVESDYGYHIIKKTDEKYQPFEE---IKSDLVSSLTSEKQSLLIQNLKEKY 126
Query: 615 SVTV 618
+V +
Sbjct: 127 NVKI 130
>gi|326798883|ref|YP_004316702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
21]
gi|326549647|gb|ADZ78032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sphingobacterium sp.
21]
Length = 464
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/242 (10%), Positives = 64/242 (26%), Gaps = 13/242 (5%)
Query: 14 AKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
K F +L + F G A VG + S + Q L ++
Sbjct: 1 MKKFAGLLTLIFLACAGALRAQDVQVIDKVAAVVGGNIILQSDIEMQYAQYLSEGNR--- 57
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
G+ IL+ L++ L Q +E V I + +
Sbjct: 58 --------ADPGVKCMILEQLLTNKLLTQQAAIDSIEVTEDEVDDNINNRLRYMTRQAGG 109
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ ++E + L + + L + + ++
Sbjct: 110 QEQLEKFLNRSLLQYKEEMRPAVKEQLIAQKMQAKITEKTGITPLEVKRYFEKIPKDSLP 169
Query: 193 DYIVL-NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
+Y + + ++++ + + + ++ ++ S
Sbjct: 170 NYNTEVEVGEIVVFPKLTKEEKQPFYDRAESLRMGIKAGDDFGTMARLYSQDPGSASSGG 229
Query: 252 EL 253
+L
Sbjct: 230 DL 231
>gi|322713110|gb|EFZ04681.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
Length = 428
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
N + D SRLA +G+N Y + K + ++V V
Sbjct: 107 NNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 25/370 (6%), Positives = 93/370 (25%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q++ ++ + + +A++ ++ D
Sbjct: 58 QQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTM-DQMRS 116
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + + I + V+ + + + ++
Sbjct: 117 RLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNL 176
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ + E + + A + + + D I
Sbjct: 177 RHILIALPENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ ++ K ++ + F K + NQ + F
Sbjct: 297 IMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ +KD+ L + + +
Sbjct: 357 LTKLHKGQI-SAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|213018605|ref|ZP_03334413.1| hypothetical protein C1A_378 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|212995556|gb|EEB56196.1| hypothetical protein C1A_378 [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 365
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/167 (8%), Positives = 40/167 (23%), Gaps = 11/167 (6%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V V + + ++ + + + +IL L+ +
Sbjct: 12 EIVADVNGEPISNLDIERRINFINSLLGTQ--------KINQKEVKSQILRQLIDEIIIV 63
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
+ + +E + + + LF + K D + + I+ L
Sbjct: 64 SEAQKMNIELSNEELNNAVT---LFLTQSLKLKADEVDQYVKKHNIDLNTLKKQIKCQLL 120
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
++ + V + + R E
Sbjct: 121 WNKIIEVGVVPLINISDQEVDDARKQKEKSDYLITFQEFIIPDQKIA 167
>gi|16759087|ref|NP_454704.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|16763482|ref|NP_459097.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|29140637|ref|NP_803979.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56412363|ref|YP_149438.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|167550725|ref|ZP_02344482.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167989955|ref|ZP_02571055.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168230361|ref|ZP_02655419.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168234847|ref|ZP_02659905.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168243501|ref|ZP_02668433.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168464364|ref|ZP_02698267.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168820926|ref|ZP_02832926.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194444526|ref|YP_002039322.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194451624|ref|YP_002044060.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194469029|ref|ZP_03075013.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194736155|ref|YP_002113109.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197248833|ref|YP_002145076.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197263512|ref|ZP_03163586.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197361300|ref|YP_002140935.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|198244102|ref|YP_002214044.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200386716|ref|ZP_03213328.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204926901|ref|ZP_03218103.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205351432|ref|YP_002225233.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207855605|ref|YP_002242256.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|213427535|ref|ZP_03360285.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213648902|ref|ZP_03378955.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|224581934|ref|YP_002635732.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|238911150|ref|ZP_04654987.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|289826182|ref|ZP_06545294.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|81677737|sp|Q5PDE6|SURA_SALPA RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|81706931|sp|Q7CR87|SURA_SALTY RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|81766233|sp|Q8XEV3|SURA_SALTI RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|25513082|pir||AH0513 survival protein SurA precursor [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16418589|gb|AAL19056.1| peptidyl-prolyl cis-trans isomerase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16501377|emb|CAD01248.1| survival protein SurA precursor [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29136261|gb|AAO67828.1| survival protein SurA precursor [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56126620|gb|AAV76126.1| survival protein SurA precursor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|194403189|gb|ACF63411.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194409928|gb|ACF70147.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194455393|gb|EDX44232.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194711657|gb|ACF90878.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195632865|gb|EDX51319.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197092775|emb|CAR58200.1| survival protein SurA precursor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197212536|gb|ACH49933.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197241767|gb|EDY24387.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197291654|gb|EDY31004.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197938618|gb|ACH75951.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199603814|gb|EDZ02359.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204323566|gb|EDZ08761.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205271213|emb|CAR36001.1| survival protein SurA precursor [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205324462|gb|EDZ12301.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205331363|gb|EDZ18127.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205335129|gb|EDZ21893.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205337413|gb|EDZ24177.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205342524|gb|EDZ29288.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|206707408|emb|CAR31681.1| survival protein SurA precursor [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224466461|gb|ACN44291.1| survival protein SurA precursor [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|267991763|gb|ACY86648.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301156721|emb|CBW16195.1| survival protein SurA precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312911062|dbj|BAJ35036.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320084330|emb|CBY94123.1| survival protein [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|321222338|gb|EFX47410.1| Survival protein SurA precursor Peptidyl-prolyl cis-trans isomerase
SurA [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|322615913|gb|EFY12830.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322620698|gb|EFY17558.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322623951|gb|EFY20788.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322627399|gb|EFY24190.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322630706|gb|EFY27470.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322638074|gb|EFY34775.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322640560|gb|EFY37211.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322647700|gb|EFY44185.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648050|gb|EFY44517.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322656918|gb|EFY53204.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657371|gb|EFY53643.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322663691|gb|EFY59891.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322666524|gb|EFY62702.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322672317|gb|EFY68429.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322676371|gb|EFY72442.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322679536|gb|EFY75581.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322686135|gb|EFY82119.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323128410|gb|ADX15840.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323194979|gb|EFZ80165.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323200112|gb|EFZ85199.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323201067|gb|EFZ86136.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323209464|gb|EFZ94397.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323212284|gb|EFZ97108.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323216589|gb|EGA01315.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323222472|gb|EGA06842.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323225783|gb|EGA10003.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323228676|gb|EGA12805.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323236710|gb|EGA20786.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323239789|gb|EGA23836.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323242163|gb|EGA26192.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323249412|gb|EGA33328.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323252253|gb|EGA36104.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323256656|gb|EGA40386.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323261310|gb|EGA44897.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323265510|gb|EGA49006.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323271702|gb|EGA55120.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326621788|gb|EGE28133.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326626455|gb|EGE32798.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
gi|332987044|gb|AEF06027.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 428
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
N + D SRLA +G+N Y + K + ++V V
Sbjct: 107 NNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 25/370 (6%), Positives = 92/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q++ ++ + + +A++ ++ D
Sbjct: 58 QQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTM-DQMRS 116
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + + I + V+ + + + ++
Sbjct: 117 RLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNL 176
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ E + + A + + + D I
Sbjct: 177 SHILIALPENPTSEQVNDAQRQAESIVEEARNGADFGKLAITYSADQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ ++ K ++ + F K + NQ + F
Sbjct: 297 IMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ +KD+ L + + +
Sbjct: 357 LTKLHKGQI-SAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|325526358|gb|EGD03958.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
TJI49]
Length = 287
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 8/141 (5%)
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
T ++ +A L +F + K + M + + Q
Sbjct: 151 TVDKARKQAADLASRARNG--DFAALAKANSQDKASAANGGDMGFVPEPMLVPAVRQAAD 208
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYL 610
PI+ + V K+ + + K++ + L + + +A L
Sbjct: 209 ALKPGQVSGPIQTPTGFHVVKLIDVRAAAPRPLADVKERVRAMLRAQRTQQGAQAYLAKL 268
Query: 611 KSQYSVTVHDNLIQRYLDGEK 631
+ +++ +++ L +
Sbjct: 269 GGNAPI--NEDALKKALATAQ 287
>gi|319653565|ref|ZP_08007664.1| hypothetical protein HMPREF1013_04281 [Bacillus sp. 2_A_57_CT2]
gi|317394764|gb|EFV75503.1| hypothetical protein HMPREF1013_04281 [Bacillus sp. 2_A_57_CT2]
Length = 292
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 34/104 (32%), Gaps = 21/104 (20%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K+ +L I + F++ +V +++ + + G
Sbjct: 5 KVIYWILGSVVTIGAAAAIFFTIKEDDAAATVNGEEISRDELH-------ERLVAQYG-- 55
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+++LD+L++ +DQ + ++ + E
Sbjct: 56 ------------QELLDSLITEKVIDQEAKKENVKVTQEEIDEE 87
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 10/122 (8%), Positives = 31/122 (25%), Gaps = 5/122 (4%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
A +++ + + G + + + + FS
Sbjct: 167 EETAKEVIGKLNDGGDFAKLAAEYSTDESNKDAGGDLGFFGKGDMVEEFEEVAFSLEPGK 226
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQYS 615
+ P++ Y V KV + + + + + + + +Y
Sbjct: 227 I-SDPVKTEYGYHVIKVAEKQEAKEAAYEDVKEEVKNTLFETEMQTEYTAWLEEKFEEYE 285
Query: 616 VT 617
+
Sbjct: 286 IK 287
>gi|257066458|ref|YP_003152714.1| hypothetical protein Apre_0965 [Anaerococcus prevotii DSM 20548]
gi|256798338|gb|ACV28993.1| hypothetical protein Apre_0965 [Anaerococcus prevotii DSM 20548]
Length = 308
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/237 (11%), Positives = 66/237 (27%), Gaps = 7/237 (2%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K +T +KI L + + + + S+ + SV + + + +
Sbjct: 6 KNLKTKTSKILLTAFLLFATLTSCNSKDRTT--SNIIASVDGKTISSDLYSKELRFYQAY 63
Query: 67 ISQKIGFVVNSERARSVGLDKKIL-----DNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
S+ G ++++ + +IL D+++ + + +E ++ D
Sbjct: 64 YSKVYGESYLENKSKNGKTNDQILRDELVDSMIKDQVMKKDLESNNIKLDDNGSNSLKNN 123
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
++ ++ IN+ Y D K + V +
Sbjct: 124 LSDKLNGEDSLKANILALGFNENSINDILYNDSIRKAHFDLYLKKNKVQDKDVVDFYNKD 183
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
+V N ++A + F + YI
Sbjct: 184 KNLHRLYKYNVLVFDDENVAKNIKDKITDAKSFKSFLNKNARNYSIINSDFVYINDQ 240
>gi|149914655|ref|ZP_01903185.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter sp.
AzwK-3b]
gi|149811448|gb|EDM71283.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter sp.
AzwK-3b]
Length = 411
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/159 (13%), Positives = 46/159 (28%), Gaps = 22/159 (13%)
Query: 17 FLVVLFVPFLI-----WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
FL L +P ++ WG++ + + + VV V Q + +
Sbjct: 4 FLAALALPAVMATSMSWGIAAPASAQNLFAPVVKVNDQAITGYEIQQ-----RARMLTLF 58
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
N + L+ GL + + F
Sbjct: 59 RSPGNPVELAR--------EQLIEERLKVDAARAAGLVLEDADIR---VGMEEF-ASRAN 106
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ + F+ L G++E+ Y + ++ ++V
Sbjct: 107 MTAEEFIGALEGAGVSEQSYREFVRAGMTWRELVRARFA 145
>gi|240850229|ref|YP_002971622.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
gi|240267352|gb|ACS50940.1| peptidyl-prolyl cis-trans isomerase [Bartonella grahamii as4aup]
Length = 324
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/192 (9%), Positives = 44/192 (22%), Gaps = 17/192 (8%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+S VV+V + Q L + L+
Sbjct: 42 TSIVVTVNGNPITNYDIQRRLAFLRLQQKQ-------------GNLVAQAKKELIDEKLK 88
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ I+ +E + V N + D L + I + + D+ +
Sbjct: 89 NIEIKRRNIEVSNDEVDRAFEN----FATQNNMTIDQLNQILIQTEITVQHFKDYIRGQI 144
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+V + +R P++ + +
Sbjct: 145 GWGRLVSARYQAETGMISEQEAVRRILKNGGVKPSTNEYTLQRIVFVIPAHRRSEIFERR 204
Query: 220 YKDNYRAPEYKR 231
++ + R
Sbjct: 205 QREASNFRAHFR 216
>gi|114799826|ref|YP_761850.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Hyphomonas neptunium ATCC 15444]
gi|114740000|gb|ABI78125.1| PPIC-type PPIASE domain protein [Hyphomonas neptunium ATCC 15444]
Length = 303
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 12/97 (12%)
Query: 18 LVVLFVPFLIWGLSDALF-----SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ + G S F +V + + + + G
Sbjct: 11 FCAVMAALTLAGCSQEGFQLEEPREVSREVAATVNGEAIYTADVEVE---AVARGLVVSG 67
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE 109
+ +E K++LD L+ + Q + +GLE
Sbjct: 68 ASLRAEDEAY----KQVLDQLIDQKLMAQEAKRLGLE 100
Score = 43.7 bits (100), Expect = 0.084, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 59/160 (36%), Gaps = 7/160 (4%)
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
S + Q+ + + R + L V + + +A + L + G+ F +
Sbjct: 123 ESVVAEQVTDEMIDRMYAEQVRLQQVNDEVSVAHIVTDTEEEAEAVWLR-VQAGEAFESL 181
Query: 521 G---KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
N A+ + + + + Y + + + PV V P E S+ + KV
Sbjct: 182 VFNHSNDSATRMENGDLGFVSPNDLPDPYPVV--IANTPVGEV-APPFEAEGSWRIVKVK 238
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + P + +D+ + + + ++ L+++ +
Sbjct: 239 DRRTEPPKTRDEMRPEIATFLTLSEVSRILRRLRTEARIE 278
>gi|87310508|ref|ZP_01092637.1| probable peptidyl-prolyl cis-trans isomerase [Blastopirellula
marina DSM 3645]
gi|87286729|gb|EAQ78634.1| probable peptidyl-prolyl cis-trans isomerase [Blastopirellula
marina DSM 3645]
Length = 620
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/597 (7%), Positives = 143/597 (23%), Gaps = 56/597 (9%)
Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
G++ S TV V R+ + + +
Sbjct: 49 GVAPQGNSAPQIKTVAVVNREPITRDELGREAARR---------------------FGDE 87
Query: 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
+L+++++ + + G++ + EI S + + + R
Sbjct: 88 VLESVINKHLIAEECHKRGIQITQTEIDAEIEASA--KKFGLSVDRWLGLLKDERNVSPA 145
Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ D ++ + + + Q + + + A
Sbjct: 146 QYRSDIVWPTMALRRLAADRLEVTQEEFSKAWQTEFGPKVKCRMISVSDRALAEELRAKA 205
Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
+ + I S + E ++ + + +
Sbjct: 206 AADPDVFADMAKDFSEDPNSAAARGLIPPIRMNMGTPEVESLVFALKDGEVSQVLFIAGQ 265
Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
+ E D Q + + + E++ +S + ++ + +D
Sbjct: 266 YLIFKCESHLPPTEVDPMKQPEIQNRMVEAIREQKLRSSAGDVYEELQEKAQVEKIWSDP 325
Query: 329 IFSLAKKGDF-----TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
G ++ I + + + + +
Sbjct: 326 AKRQQNPGVVATLNGQQIMLDELQEECITRHGIDVLEGEINRRLLQQALKSKNLEVTEQD 385
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
+ ++ R + + + V+ + K+ + +V
Sbjct: 386 LNDEISRAADSYGFLKEDGSPDYEAWLEEVTQEQSVTVEVYVRDAVWPTVALKKLVSDKV 445
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
++ + K + VQ+ + R+ +EV +K+ E
Sbjct: 446 IVSEEDIQKGFEANYGER----VQVLAIVLDNQRRAQEVWDMARKNPSEQFFGELARQY- 500
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
+ + KN + I R + + F +
Sbjct: 501 ------------SIEPVSKNNDGQV---PPIRRNGGQ-----PKLEEEAFRLQPGELSSI 540
Query: 564 PIENGLSYVVF---KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
S ++ + + +D+ + + + + + LK + +
Sbjct: 541 VNIGRQSLILKAMGRTKPTITDVNDVRDELVKDIHEKKIRLEMAKQFDALKEEAQID 597
>gi|254514975|ref|ZP_05127036.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
gi|219677218|gb|EED33583.1| conserved hypothetical protein [gamma proteobacterium NOR5-3]
Length = 276
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 51/165 (30%), Gaps = 17/165 (10%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ + +L + GL DA + +T V VP + ++ +
Sbjct: 9 LITGVAAGILI---ALTGLVDAGHAPLPDTTAALVNGTPVPRDELQSVLQR-----RAQE 60
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
G V+ A LD+++ L Q ++G+ V I ++ + +
Sbjct: 61 GAPVDQLLA--------TLDDMIDEELLIQRASELGILRRDSNVRVAIIQAMEKSILNEE 112
Query: 132 FSHDVFVSRLAREGINEKE-YIDHYTKMLSRTDVVGMFVGGMRPS 175
++ ++L + + + L V +
Sbjct: 113 RGRNLAEAQLQEFYRDNTALFAEPLRFQLEEIVVEDETQATAIIT 157
Score = 45.6 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN-RMDNENKFFGYDGISQ 551
+ E ++A ++ + +N S+ Q+ + ++ F D +S+
Sbjct: 142 EEIVVEDETQATAIITALREGLSAKALAAENDAVSITRLPQVPLSLSALSRRFPQDLVSR 201
Query: 552 VFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGPVQEKDKFISYLTQMMNKDL-LDSVIAY 609
+ + + E G+ + + V + V P ++ + QM +D+ + + +
Sbjct: 202 LETAGKGDILTDKSERGIRIIKILDVREANVPPFEDVRLSVLNELQMYRQDIAYEEYLEW 261
Query: 610 LKSQYSVTVHDNL 622
L+ + + + L
Sbjct: 262 LRQRADIRKNAQL 274
>gi|124516597|gb|EAY58105.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
rubarum]
Length = 340
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/371 (12%), Positives = 102/371 (27%), Gaps = 65/371 (17%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + S S + ++ E S+ +L ++
Sbjct: 35 DQVMAVVNHHMITKSELDRSLAPTFKKLHKRFRGKAYRELVASLEYK--LLMKKINERLE 92
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ E GL + I K+N S + L+ +G++ + Y K +
Sbjct: 93 LEEAERQGLTVTDDELDHAIESIMQ---KNNFTSKWQLKTALSEQGMSYRRYKQQLRKQM 149
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ +V V S + Q++
Sbjct: 150 TILKLVNQEVRSTVV---------------------------------ISPDEVRQYYLA 176
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
++D YR P + + Q + +
Sbjct: 177 HRDKYRLPPHV-------------------------TLRDIFLRIPEGATEAQIQEIRKH 211
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
+ + E + + +LG +K+ + + + G +
Sbjct: 212 GEHIVRQLKRGDDFVILAGSESEGPNAENGGALGDLTKDQLLPELVQPA--FTIPPGQTS 269
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
+I S G+ I V + + SF+E+K I N + ++++ ++L E +
Sbjct: 270 GLIQTSNGFYIIKVIKREDNSFRSFKELKAQILNDLTKKTTDKRLRIWLEKLREKSYVVI 329
Query: 400 SMDEISRREKI 410
+ +K
Sbjct: 330 YAKPEAFDQKA 340
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 21/226 (9%), Positives = 59/226 (26%), Gaps = 11/226 (4%)
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG--SYMW 465
+ + +G + + + + + V PD Y
Sbjct: 116 MQKNNFTSKWQLKTALSEQGMSYRRYKQQLRKQMTILKLVNQEVRSTVVISPDEVRQYYL 175
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ L ++ + + + E K + ++ K G +F + +
Sbjct: 176 AHRDKYRLPPHVTLRDIFLRIPEGATEAQIQEI--RKHGEHIVRQLKRGDDFVILAGSES 233
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
N D + + F+ P I+ + + KV + +
Sbjct: 234 EGPNAENGGALGDLTKDQLLPELVQPAFTIPPGQTSGL-IQTSNGFYIIKVIKREDNSFR 292
Query: 586 EKDKFISYLTQMM----NKDLLDSVIAYLKSQYSVTVH--DNLIQR 625
+ + + + L + L+ + V ++ +
Sbjct: 293 SFKELKAQILNDLTKKTTDKRLRIWLEKLREKSYVVIYAKPEAFDQ 338
>gi|193214032|ref|YP_001995231.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton
thalassium ATCC 35110]
gi|193087509|gb|ACF12784.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroherpeton
thalassium ATCC 35110]
Length = 728
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/377 (8%), Positives = 103/377 (27%), Gaps = 11/377 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
E ++ ++ S ++ ++ E + + L + + + L
Sbjct: 355 DESKELLKRLLSRNSEKLKHERDLFIQQLKETYHFKENESALPMLTAKIDSNSTFAQLDD 414
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
+ V + D + G ++ + + +
Sbjct: 415 LDDATLGTVFFTFAEKQTRTLADLIDFMKRFGGKNSLLTADAIHQYAKQYVDETLKSYEI 474
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
+ + + + + L DE + + + +
Sbjct: 475 DHLEARYADFTQLMEDYRDGVLLFKVSDETVWSQAAATDSAGRA-YYATHKGDFRLGERM 533
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
+++ D + + T + + Q + + + L + +K
Sbjct: 534 KVSEIVVSEKSLADDIYNELTQNIRQRDVVSAQDVKIQKRKIQAQLRKLKKRRDKKSQLK 593
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
+ V + + + SL + EN+ + ++F
Sbjct: 594 FQKLQEQLTGLQVDDQPRSFEALAARYSETADSLGSAESAIFNRGENRR-----VDKLFG 648
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAYL 610
PV V P Y + ++ + ++ + + ++ + L + L
Sbjct: 649 KPVGFV-AAPESINERYRIMRLDIMLPPTEKTYEEARTEIFSILQEQNTRALETEWVNRL 707
Query: 611 KSQYSVTVHDNLIQRYL 627
+++ +TV ++ +++
Sbjct: 708 RAKSKITVFEDNLKQAF 724
>gi|319405490|emb|CBI79109.1| Peptidyl-prolyl cis-trans isomerase [Bartonella sp. AR 15-3]
Length = 318
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/218 (10%), Positives = 52/218 (23%), Gaps = 21/218 (9%)
Query: 18 LVVLFVPFLIWGLSDALFSVSG----SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
L + + FL +S ++F S +S VV+V + Q
Sbjct: 9 LALFCITFLSVSISISIFFTSQAFAQTSVVVTVNGSAITSYDIQRRIAFLKLQQRQ---- 64
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
L + + L+ + I+ +E + N +
Sbjct: 65 ---------GNLAVQAKNELIDETLKNNEIKRRNIEVSKDELESAFEN----FATQNNMT 111
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ L + + + + + + +V + R
Sbjct: 112 VEQLSQMLTQTDVTVEHFKAYILGQMGWGRLVNARYQAEGGILTEQEAVHRILKNGGVKP 171
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
P + ++ K+ + R
Sbjct: 172 STNEYTLQQIIFVIPEHRRSAILEKRIKEANQFRANFR 209
>gi|256545178|ref|ZP_05472544.1| hypothetical protein HMPREF0078_0801 [Anaerococcus vaginalis ATCC
51170]
gi|256399219|gb|EEU12830.1| hypothetical protein HMPREF0078_0801 [Anaerococcus vaginalis ATCC
51170]
Length = 300
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/207 (10%), Positives = 51/207 (24%), Gaps = 5/207 (2%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS-----VGLDKKILD 91
V V + + F +K G +++ L+ ++LD
Sbjct: 26 FDKDKYVAVVNDEGISKELFEKELSYYQKFYLKKYGDKFLDSKSKKGDSNYKKLESELLD 85
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+L+ + ++ G++ I + + +V + + E Y
Sbjct: 86 SLIMDQAMLNDLKKNGIKVTKNDSQEIIDKISQEISSKDSLIENVKSFGVTEDEFEEISY 145
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
D K + V + D + ++ N+
Sbjct: 146 QDSIRKKHYDYFLNNNKVKDSKILKYYEDNKNLHKKYKYDCLIFDDKKEAIKIRSNIKNS 205
Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFD 238
+ K K Y +
Sbjct: 206 DDFKNHLKNKVRNYDIYRSEFVYNDDN 232
>gi|302871629|ref|YP_003840265.1| hypothetical protein COB47_0977 [Caldicellulosiruptor obsidiansis
OB47]
gi|302574488|gb|ADL42279.1| hypothetical protein COB47_0977 [Caldicellulosiruptor obsidiansis
OB47]
Length = 236
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 19/136 (13%)
Query: 5 IRKASR-TWVAKIFLVVLFVPFLIWGLSDALF----------SVSGSSTVVSVGRQKVPF 53
IRK SR ++ + + + F SD V V +K+
Sbjct: 2 IRKKSRRNFLVIALISLSLILFSNVLASDIWTECGKKIKEIEQSKDGRIVAVVNGEKIYK 61
Query: 54 SSFINSWKQELGMI--SQKIGFVVNSERARS------VGLDKKILDNLVSGATLDQFIED 105
++ E ++ ++ E + K++L+ ++ L Q +
Sbjct: 62 KDLEIAYALEEASYLYKKEFYQKLSKEEKINSIKPPVQKTKKEVLNEMIENLLLLQAAKK 121
Query: 106 IGLEADHGRVWGEIAR 121
G +
Sbjct: 122 EGYFISEKEARDYYKK 137
>gi|261245325|emb|CBG23113.1| survival protein SurA precursor [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
Length = 428
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
N + D SRLA +G+N Y + K + ++V V
Sbjct: 107 NNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 25/370 (6%), Positives = 92/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q++ ++ + + +A++ ++ D
Sbjct: 58 QQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTM-DQMRS 116
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + + I + V+ + + + ++
Sbjct: 117 RLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNL 176
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ E + + A + + + D I
Sbjct: 177 SHILIALPENPTSEQVNDAQRQAESIVEEARNSADFGKLAITYSADQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ ++ K ++ + F K + NQ + F
Sbjct: 297 IMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ +KD+ L + + +
Sbjct: 357 LTKLHKGQI-SAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|229030040|ref|ZP_04186105.1| Foldase protein prsA 1 [Bacillus cereus AH1271]
gi|228731301|gb|EEL82218.1| Foldase protein prsA 1 [Bacillus cereus AH1271]
Length = 288
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 128 TEKDVKENYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 186
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ F V P++ Y + KVT+ K + KD+ L
Sbjct: 187 TGFAPGQTVKEFEEAAFKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDQIRKDL 245
Query: 595 TQMMNKDL----LDSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 246 EQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFKNTFE 283
>gi|291556857|emb|CBL33974.1| PPIC-type PPIASE domain [Eubacterium siraeum V10Sc8a]
Length = 472
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/386 (10%), Positives = 107/386 (27%), Gaps = 20/386 (5%)
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
DE + Y+ + ++ T+ A ++ + L E+
Sbjct: 59 DEEKEYYQVKFKDFYPEYSFTIANYGLDETNSAYASYAQSYRKNIIDMLTNEKLILRKAK 118
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
LG L + + +K + + + + S +
Sbjct: 119 ELGL--------DQLTEEEMAEVEKAYTKNLSDWYASFEKKAKTALGISTDGTSGTEDSA 170
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
++ + + + ++K+ L + + ++
Sbjct: 171 NDEKILEKEKELFNEYIAGFGLTEDTFLMWQTNTAIQKKVNDYLLKDITVSDSEIDDYIT 230
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI------KESIPARDRKLEEVLT 484
+Q + S+ V +P+ + I + + E
Sbjct: 231 KLKAEAKQAYEKSASSYATDSEYKKVWIPEDARYIKYIAVGIASSDYAEINAARNESGAD 290
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD--NENK 542
D + D K + E+ KA+ + + + +G +F + K ++ + ++ N
Sbjct: 291 DAEIDKKRDEKLAEIKEKADAALKKATADGADFDAVVKEYSSAYSESTAGEQILVLNSKG 350
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE---KDKFISYLTQMM 598
VF+ I Y + K V+++KV + L
Sbjct: 351 LISDALYDAVFALEKPGDISGLIPTDSGYYIVKYVSDAKVTDSDLSNYRKTVRQELLTSR 410
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++++ +S + +
Sbjct: 411 QSEKTNAILEEWRSAVNYEYDYEKLN 436
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 54/430 (12%), Positives = 128/430 (29%), Gaps = 50/430 (11%)
Query: 19 VVLFVPFLIWGLSDALFSVS---------------GSSTVV-----SVGRQK-----VPF 53
+L + G SD++ + V S+ ++ V F
Sbjct: 10 AILACTMMFSGCSDSILTSGTDSGTTSVENIWTAKDDDIVAWATSDSLSDEEKEYYQVKF 69
Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
F + + + ++ + + K I+D L + + + +++GL
Sbjct: 70 KDFYPEYSFTIANYG--LDETNSAYASYAQSYRKNIIDMLTNEKLILRKAKELGL---DQ 124
Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
E+A + K+ + F + + + ++
Sbjct: 125 LTEEEMAEVEKAYTKNLSDWYASFEKKAKTALGISTDGTSGTEDSANDEKILEKEKELFN 184
Query: 174 PSNL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
F + N ++ S++ + + K K + K
Sbjct: 185 EYIAGFGLTEDTFLMWQTNTAIQKKVNDYLLKDITVSDSEIDDYITKLKAEAKQAYEKSA 244
Query: 233 SYILFDVHEKEKKIEI---------------SNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
S D K+ I E+ A ++ + + E+L
Sbjct: 245 SSYATDSEYKKVWIPEDARYIKYIAVGIASSDYAEINAARNESGADDAEIDKKRDEKLAE 304
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLA 333
+K ++ G F + +E + S+ + G + + + +L D++F+L
Sbjct: 305 IKEKADAALKKATADGADFDAVVKEYSSAYSESTAGEQILVLNSKGLISDALYDAVFALE 364
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
K GD + +I GY I + +K + ++ ++ SEK +
Sbjct: 365 KPGDISGLIPTDSGYYIVKYVSDAKVTDSDLSNYRKTVRQELLTSRQSEKTNAILEEWRS 424
Query: 394 FLALGTSMDE 403
+ ++
Sbjct: 425 AVNYEYDYEK 434
>gi|161612428|ref|YP_001586393.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|161361792|gb|ABX65560.1| hypothetical protein SPAB_00117 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 428
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
N + D SRLA +G+N Y + K + ++V V
Sbjct: 107 NNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 25/370 (6%), Positives = 92/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q++ ++ + + +A++ ++ D
Sbjct: 58 QQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANIAKQNNMTM-DQMRS 116
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + + I + V+ + + + ++
Sbjct: 117 RLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDALAKQIGTQNDASTELNL 176
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ E + + A + + + D I
Sbjct: 177 SHILIALPENPTSEQVNDAQRQAENIVEEARNGADFGKLAITYSADQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ ++ K ++ + F K + NQ + F
Sbjct: 297 IMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ +KD+ L + + +
Sbjct: 357 LTKLHKGQI-SAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|115375700|ref|ZP_01462954.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
gi|115367263|gb|EAU66244.1| foldase protein PrsA [Stigmatella aurantiaca DW4/3-1]
Length = 204
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 52/172 (30%), Gaps = 6/172 (3%)
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ Y V + E E + + + +A ++ + K GK F
Sbjct: 21 TNHVYARVAVTEEELRAAYTAHEAEFQEPEQVHAAQLVVKGLDEARRVQAQL-KAGKKFA 79
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
D+ + S + VF+ V + Y +F+V
Sbjct: 80 DLARRYSLSADAKVGGDLGFFPRGQMPPVFDEVVFNLRPGQV-SDVVSTEYGYHLFRVLE 138
Query: 579 SKVGPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
K ++ + + + + ++ ++ L + + V++ +Q
Sbjct: 139 FKPARKRDFVEVRAKVEAREVKRKQEEAHEAFEKALLDKAKLWVNERTLQSI 190
>gi|304396535|ref|ZP_07378416.1| Peptidylprolyl isomerase [Pantoea sp. aB]
gi|304356044|gb|EFM20410.1| Peptidylprolyl isomerase [Pantoea sp. aB]
Length = 431
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 9/122 (7%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
S +Q+ G + + L +IL+ + + Q + G++
Sbjct: 39 ESDVDGMMSTVKSQ-AQQAGQQLPDD----KTLRHQILERQIMDNIILQMGDKAGVQISD 93
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
++ I NK S D SRLA +G+N Y K ++ +V V
Sbjct: 94 EQLDQAIQNIAA----QNKMSLDQLRSRLAYDGMNYSVYRSQIRKEMTIAEVRNNEVRRR 149
Query: 173 RP 174
Sbjct: 150 IT 151
Score = 44.1 bits (101), Expect = 0.083, Method: Composition-based stats.
Identities = 18/205 (8%), Positives = 53/205 (25%), Gaps = 6/205 (2%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D I L + + G ++ ++
Sbjct: 222 DSQALKGGNMGWGKIEELPTLFAQALSSAKKGDIVGPIRSGVGFHILKVNDLRGENKNVS 281
Query: 479 LEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ EV + + + T E+ ++ Q+ + F K + NQ +
Sbjct: 282 VTEVHSRHILLKPSPILTDEQARAQLEQIANDIRSGKTTFAAAAKQYSDDPGSANQGGDL 341
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISY 593
+ F + P+ + + + ++ + +K++
Sbjct: 342 GWTSPEVFDPAFRDALLRLKKGQTSQ-PVHSSFGWHLIQLLDTRQVDKTDAAQKERAYRM 400
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618
L + + + ++ V +
Sbjct: 401 LFNRKFAEEAQTWMQEQRASAYVKI 425
>gi|89075561|ref|ZP_01161966.1| putative survival protein SurA [Photobacterium sp. SKA34]
gi|89048701|gb|EAR54273.1| putative survival protein SurA [Photobacterium sp. SKA34]
Length = 433
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 11/193 (5%)
Query: 22 FVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ ++ G+S + V++V + S K +++ +
Sbjct: 8 VLSLMMMGMSATSMAAPQELDQVVMTVNDGVILQSDVNAMLKTVHLNAAEE-HQQLPPNN 66
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
L ++++D L+ Q + +G+ D ++ IA K S D
Sbjct: 67 I----LRQQVMDKLILENLQLQQAQQLGIRIDDSQLDKAIADV----AKQRNMSVDQLRQ 118
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
LA GI+ + + + ++ + V ++ ++ + N
Sbjct: 119 SLANAGISYAMFREQMRNDMLASEARNIIVRKRVNVLPQEVESLAKQMAKQTQQNVQYNI 178
Query: 200 RHVPAIADPSNAV 212
+ D
Sbjct: 179 SQIQIRVDEDADK 191
Score = 40.6 bits (92), Expect = 0.75, Method: Composition-based stats.
Identities = 14/196 (7%), Positives = 56/196 (28%), Gaps = 6/196 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD- 485
G+ + +F +++ + + ++I + + EV
Sbjct: 231 GEWGWMGKAEMPTVFADQIQNNGKNAIIGPFRSGVGFHILKINDVKGMPSVSVVEVKARH 290
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFF 544
+ + + ++ ++ + F K + ++ +
Sbjct: 291 ILIKPSMILSDAAAKAELEKIRQSIISGKQTFSAAAKAYSEDPGSAVNGGQLGWQVPNMY 350
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKD 601
+V + PV+ + P ++ + + +V K++ + +
Sbjct: 351 APAFKDKVETLPVDKI-SEPFKSSFGWHIVEVEGRRKVDRTDAAMKNRAAQIIFNRKFNE 409
Query: 602 LLDSVIAYLKSQYSVT 617
+ + L++ +
Sbjct: 410 EAQTWLQELRAGAYIE 425
>gi|85710398|ref|ZP_01041462.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
gi|85687576|gb|EAQ27581.1| peptidyl-prolyl isomerase [Erythrobacter sp. NAP1]
Length = 448
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/127 (9%), Positives = 31/127 (24%), Gaps = 9/127 (7%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + V A L ++L NL+ Q
Sbjct: 59 AVVNGFVITGTDIDQRVALVTNA------SEVEVSDAERQRLRVQVLRNLIDETLKIQAA 112
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + V + ++ + + LA G + ++ +
Sbjct: 113 RAQEIGVERAEVEQTYQQLAA---QNFGQNPERMDEYLASIGSSPAALKRQIEGEIAWEN 169
Query: 164 VVGMFVG 170
++ +
Sbjct: 170 LIRRNIS 176
>gi|149180663|ref|ZP_01859167.1| hypothetical protein BSG1_16940 [Bacillus sp. SG-1]
gi|148851816|gb|EDL65962.1| hypothetical protein BSG1_16940 [Bacillus sp. SG-1]
Length = 255
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 2/96 (2%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
TV V + + ++ Q Q + E A L + +D+L+
Sbjct: 61 AEKTVAVVNDEDIKGEAYNTLLTQTQLQYQQMGQDPTSEELA--TQLKESTIDSLIGQTL 118
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
L Q + G EA + EI + + +F
Sbjct: 119 LLQEADKKGYEATDEEIQKEIDTLKANYEDEAQFEE 154
>gi|49474098|ref|YP_032140.1| hypothetical protein BQ04600 [Bartonella quintana str. Toulouse]
gi|49239602|emb|CAF25959.1| hypothetical protein BQ04600 [Bartonella quintana str. Toulouse]
Length = 324
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 44/162 (27%), Gaps = 17/162 (10%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+ K + +A + L V L+ + + VV+V +
Sbjct: 7 MNKFKKRILALFCIAPLSVSNLLVSGFLISPVFAQTVIVVTVNGNPITNYDIQRR----- 61
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ + L + + L++ + I+ +E V
Sbjct: 62 --------TAFLKLQQKQGNLAAQAKNELINEIVKNTEIKRRNIEVSDNEVESAFEN--- 110
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
N + D L + I + + D+ + +V
Sbjct: 111 -FAMQNNMTVDQLNQILMQNDITVQHFKDYIRGQIGWGRLVN 151
>gi|118579840|ref|YP_901090.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
propionicus DSM 2379]
gi|118502550|gb|ABK99032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pelobacter
propionicus DSM 2379]
Length = 352
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/284 (9%), Positives = 67/284 (23%), Gaps = 12/284 (4%)
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ + E +K+ S ++ + +
Sbjct: 70 PVYARELERVKKALLAGRPNQQIPSEHQKEFDKMALNQLTSAELLYQAGEKLDTKDIDKQ 129
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
++ + K A + E Y + + TV+ +
Sbjct: 130 VEAKMSQGKARFATTEEFQKAIAGLGMNESDLREYTRRDAVIANFVQQTFASKVTVSDEE 189
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK---EGKNF 517
+ + + ++ E V K E+ KA + + K G +F
Sbjct: 190 SRKFY----DENQDKFKQSESVRASHILIGVDPKADPEIRKKAREKAEKLRKELAGGADF 245
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-- 575
+ + + + FS V +E Y + K
Sbjct: 246 ATLARENSTCPSSQQGGDLGFFPRGQMVPPFEQAAFSLKQGEV-SDVVETQFGYHIIKQM 304
Query: 576 --VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V K + + YL + + + + +
Sbjct: 305 GHKNAETVSYADAKARIVDYLKNQKVNSAITAYLDDARKTSKIE 348
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 10/178 (5%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
+ V V + V + +++ + + SE DK L+ L
Sbjct: 55 SAQQQKDVVARVNGKPVYARELERV---KKALLAGRPNQQIPSE--HQKEFDKMALNQLT 109
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
S L Q E + + +V ++++ +F +A G+NE + ++
Sbjct: 110 SAELLYQAGEKLDTKDIDKQVEAKMSQGKARFATTEEFQKA-----IAGLGMNESDLREY 164
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ + V + + +++ + H+ DP
Sbjct: 165 TRRDAVIANFVQQTFASKVTVSDEESRKFYDENQDKFKQSESVRASHILIGVDPKADP 222
>gi|307244093|ref|ZP_07526212.1| putative peptidylprolyl isomerase PrsA1 [Peptostreptococcus
stomatis DSM 17678]
gi|306492617|gb|EFM64651.1| putative peptidylprolyl isomerase PrsA1 [Peptostreptococcus
stomatis DSM 17678]
Length = 353
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/190 (10%), Positives = 56/190 (29%), Gaps = 11/190 (5%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV-----N 76
+ L+ + S V SV + + +I K M + G + +
Sbjct: 4 VLAILLAAVVGLSTVACSSDDVASVDGKGISKKEYIEQLKFTKLMYEMQYGDKIWDQMKS 63
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+ + K +L ++V + E ++ D + ++ F +
Sbjct: 64 QNKEYQETVKKNVLQSMVKSRVYLSYAEKNNVKPDEKVLSQYKKKNKE------AFENAK 117
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ + GI++ + + + T ++ P+ + + +I+
Sbjct: 118 AKEKFEKAGIDQAFMDKYSEQAATMTSLLNFLQKKAMPTEEEVKAKFETEGDKLDASHIL 177
Query: 197 LNNRHVPAIA 206
+
Sbjct: 178 IKTVDDNNKP 187
>gi|326790776|ref|YP_004308597.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
lentocellum DSM 5427]
gi|326541540|gb|ADZ83399.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
lentocellum DSM 5427]
Length = 330
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/289 (11%), Positives = 93/289 (32%), Gaps = 14/289 (4%)
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ + + + A + V +
Sbjct: 49 VTKKALDQQLVYLDSLMQWQYGEDYESNEEAMNYYNEQKRLMVDYLVEIQLIISKAQEYD 108
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
++ + ++L D+ + + + + L ++ +D +++ T + D
Sbjct: 109 VNVTADDVDEELELLKSDYDTEAAFEEALTTSGMSLEELKQMLKEDLIVNQVVTASTKD- 167
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ V +E D ++ T+ + A +A ++ +Y K G +F D+
Sbjct: 168 --ITVSDEEIKTYYDGNIDSFKTEAGATMSHILVAT--EEEAKEIKAKYDK-GTSFEDLA 222
Query: 522 KNLGASLLTTNQ--INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
+ G + + + + + D ++ V P++ + + KVT+
Sbjct: 223 EEYGTDATKSQGGLLEYIPYNSTKYDADFLASAKQLDEGEV-SEPVKTQNGWHLIKVTDV 281
Query: 580 KVGP-----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ KD+ L ++++ + K ++ ++++LI
Sbjct: 282 NKEERIKSYDEVKDEIKEQLLIQKQNEVVEKKVKEWKESTNIVINEDLI 330
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/285 (10%), Positives = 81/285 (28%), Gaps = 13/285 (4%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSS-----TVVSVGRQKVPFSSFINSWKQELGMIS 68
+ L+V + F + G S + ++ + +VG KV + ++
Sbjct: 7 GIVLLMVGLLGFGVVGCSKVADNSQTNNKTEDVVIATVGDGKVTKKALDQQLVYLDSLMQ 66
Query: 69 QKIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ G S +++ ++D LV + ++ + V E+
Sbjct: 67 WQYGEDYESNEEAMNYYNEQKRLMVDYLVEIQLIISKAQEYDVNVTADDVDEELELLKSD 126
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ + F L G++ +E + L VV + S+ +
Sbjct: 127 YDTEAAFEEA-----LTTSGMSLEELKQMLKEDLIVNQVVTASTKDITVSDEEIKTYYDG 181
Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
++ + + + A + + + ++ + A EY + +
Sbjct: 182 NIDSFKTEAGATMSHILVATEEEAKEIKAKYDKGTSFEDLAEEYGTDATKSQGGLLEYIP 241
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
+ + + Q + K D +
Sbjct: 242 YNSTKYDADFLASAKQLDEGEVSEPVKTQNGWHLIKVTDVNKEER 286
>gi|113867525|ref|YP_726014.1| peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
gi|113526301|emb|CAJ92646.1| Peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha H16]
Length = 264
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 50/137 (36%), Gaps = 8/137 (5%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGY 546
K++ E + A ++ + K G F D+ K + +D + +
Sbjct: 129 KEYHARHILVEKEADAKAIIAKI-KGGAKFEDMAKASSKDPGSAANGGDLDWANSSSYVP 187
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM------NK 600
+ + + + P++ + + ++ + + + ++ LTQM+ +
Sbjct: 188 EFSAAMTGLKKGQLTDTPVKTQFGWHIIELVDVRDAKIPSFEEVKPQLTQMLMGDQNWQR 247
Query: 601 DLLDSVIAYLKSQYSVT 617
+ +++ LK + +
Sbjct: 248 EQFQAMMKSLKDKAKIQ 264
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 26/181 (14%), Positives = 67/181 (37%), Gaps = 3/181 (1%)
Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
A ++ + + + + K S+ EL+ +Y+K K ++ +
Sbjct: 69 VQEANKRGLTQRDDVQEQLEQARLNVLAGAVFEDYVKTHGASDAELRKQYDKIKSQFGNG 128
Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVS 324
+ ++ + +A +K G KF +A+ K + G ++
Sbjct: 129 KEYHARHILVEKEADAKAIIAKIKGGAKFEDMAKASSKDPGSAANGGDLDWANSSSYVPE 188
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ ++ L K + FG+ I + +++ + SF+EVK + + + ++
Sbjct: 189 FSAAMTGLKKGQLTDTPVKTQFGWHIIELVDVRDAKIPSFEEVKPQLTQMLMGDQNWQRE 248
Query: 385 K 385
+
Sbjct: 249 Q 249
Score = 42.5 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 13/100 (13%), Positives = 28/100 (28%), Gaps = 15/100 (15%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
+ F + + A + + V + + + + G N E
Sbjct: 5 VLSFSLAAVLAAGSLPAIAQNAAVVNGKAISSAKLDK--------LIAGTGQPDNPE--- 53
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
L + + L+ L Q GL V ++ +
Sbjct: 54 ---LRSRARNMLIDRELLVQEANKRGLTQRDD-VQEQLEQ 89
>gi|240081552|ref|ZP_04726095.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA19]
gi|240124329|ref|ZP_04737285.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID332]
Length = 332
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/174 (7%), Positives = 44/174 (25%), Gaps = 8/174 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 55 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 107
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P ++ + +A + + +
Sbjct: 108 IVQAGKRRNIQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSE 167
Query: 159 LSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ G+ + R D I +
Sbjct: 168 AEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYDQ 221
>gi|167749278|ref|ZP_02421405.1| hypothetical protein EUBSIR_00229 [Eubacterium siraeum DSM 15702]
gi|167657771|gb|EDS01901.1| hypothetical protein EUBSIR_00229 [Eubacterium siraeum DSM 15702]
Length = 472
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/386 (10%), Positives = 107/386 (27%), Gaps = 20/386 (5%)
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
DE + Y+ + ++ T+ A ++ + L E+
Sbjct: 59 DEEKEYYQVKFKDFYPEYSFTIANYGLDETNSAYASYAQSYRKNIIDMLTNEKLILRKAK 118
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
LG L + + +K + + + + S +
Sbjct: 119 ELGL--------DQLTEEEMAEVEKAYTKNLSDWYASFEKKAKTALGISTDDTSGTEDSA 170
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
++ + + + ++K+ L + + +V
Sbjct: 171 NDEKILEKEKELFNEYIAGFGLTEDTFLMWQTNTAIQKKVNDYLLKDITVSDSEVDDYIT 230
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI------KESIPARDRKLEEVLT 484
+Q + S+ V +P+ + I + + E
Sbjct: 231 KLKAEAKQAYEKSASSYATDSEYKKVWIPEDARYIKYIAVGIASSDYAEINAARNESGAD 290
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD--NENK 542
D + D K + E+ KA+ + + + +G +F + K ++ + ++ N
Sbjct: 291 DAEIDKKRDEKLAEIKEKADAALKKATADGADFDAVVKEYSSAYSESTAGEQILVLNSKG 350
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE---KDKFISYLTQMM 598
VF+ I Y + K V+++KV + L
Sbjct: 351 LISDALYDAVFALEKPGDISGLIPTDSGYYIVKYVSDAKVTDSDLSDYRKTVRQELLTSR 410
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++++ +S + +
Sbjct: 411 QSEKTNAILEEWRSAVNYEYDYEKLN 436
Score = 46.0 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 48/373 (12%), Positives = 115/373 (30%), Gaps = 25/373 (6%)
Query: 51 VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
V F F + + + ++ + + K I+D L + + + +++GL
Sbjct: 67 VKFKDFYPEYSFTIANYG--LDETNSAYASYAQSYRKNIIDMLTNEKLILRKAKELGL-- 122
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
E+A + K+ + F + + + ++
Sbjct: 123 -DQLTEEEMAEVEKAYTKNLSDWYASFEKKAKTALGISTDDTSGTEDSANDEKILEKEKE 181
Query: 171 GMRPSNL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
F + N ++ S++ + + K K +
Sbjct: 182 LFNEYIAGFGLTEDTFLMWQTNTAIQKKVNDYLLKDITVSDSEVDDYITKLKAEAKQAYE 241
Query: 230 KRISYILFDVHEKEKKIEI---------------SNDELQAEYEKNKEKYFSPEIRTVEQ 274
K S D K+ I E+ A ++ + + E+
Sbjct: 242 KSASSYATDSEYKKVWIPEDARYIKYIAVGIASSDYAEINAARNESGADDAEIDKKRDEK 301
Query: 275 LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIF 330
L +K ++ G F + +E + S+ + G + + + +L D++F
Sbjct: 302 LAEIKEKADAALKKATADGADFDAVVKEYSSAYSESTAGEQILVLNSKGLISDALYDAVF 361
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+L K GD + +I GY I + + +K + ++ ++ SEK +
Sbjct: 362 ALEKPGDISGLIPTDSGYYIVKYVSDAKVTDSDLSDYRKTVRQELLTSRQSEKTNAILEE 421
Query: 391 LEEFLALGTSMDE 403
+ ++
Sbjct: 422 WRSAVNYEYDYEK 434
>gi|260775523|ref|ZP_05884420.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio coralliilyticus
ATCC BAA-450]
gi|260608704|gb|EEX34869.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio coralliilyticus
ATCC BAA-450]
Length = 431
Score = 52.6 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 48/173 (27%), Gaps = 9/173 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V V S S K + N L +++ + L+
Sbjct: 28 DKVAVIVNSGVVLQSDIETSLKTIRANAKKN-----NQSLPDEATLREQVTEKLIVDTIQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q E IG+ D R+ I + + + + +A EG++ ++ + K +
Sbjct: 83 QQEAERIGVRIDDNRLNEAIDEIAKNNNQTLQ----QLNTSIAEEGLSYAQFREQVRKEI 138
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ + V + + H+ + +
Sbjct: 139 AANEARNALVRRRINILPAEVDNLANILAKETNATVQYKIGHIQLRVNDGDDK 191
>gi|163868025|ref|YP_001609229.1| peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP
105476]
gi|161017676|emb|CAK01234.1| Peptidyl-prolyl cis-trans isomerase [Bartonella tribocorum CIP
105476]
Length = 322
Score = 52.2 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 17/161 (10%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+ K + +A + L V L+ + + ++ VV+V +
Sbjct: 7 MNKLKKRLLALFCIASLGVSSLLINEFLISSAFAQTAIVVTVNGNPITNYDIQRRV--AF 64
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ QK G L + L+ + I+ +E + V
Sbjct: 65 LRLQQKQGS-----------LAAQAKKELIDEELKNIEIKRRNIEVSNDEVNRAFEN--- 110
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
N + D L + I + + D+ + +V
Sbjct: 111 -FATQNNMTVDQLNQILIQNDITVQHFKDYIRGQIGWGRLV 150
>gi|107027409|ref|YP_624920.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia AU 1054]
gi|116693880|ref|YP_839413.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia HI2424]
gi|105896783|gb|ABF79947.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia AU 1054]
gi|116651880|gb|ABK12520.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia HI2424]
Length = 276
Score = 52.2 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 15/98 (15%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
+ G + TV +V + + + S + S +
Sbjct: 15 ALAGALSGPVHAQTAETVATVNGTPITQADVDTLLR--------------ASGQPDSPQI 60
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ I + L++ + Q E AD V + ++
Sbjct: 61 RQAIKNQLITRVLVQQAAEKANY-ADKPEVKAAMQQAK 97
Score = 45.2 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 24/201 (11%), Positives = 50/201 (24%), Gaps = 20/201 (9%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL----TDVKKDWKT 492
+Q + D P K + + + +++ + E+V V K
Sbjct: 75 QQAAEKANYADKPEVKAAMQQAKVTAEVQLYLRDHVKPEPVTDEQVKARYDELVAALGKN 134
Query: 493 VKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-----INRMDNENKF- 543
+ K A VL K GK+F + + + ++ +
Sbjct: 135 EYKPRVIVVKDPVAAATVLSELKAGKSFDGLARQYSLAPSRDTGGELPWVSFNTPAAEGK 194
Query: 544 ---FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
+ V I + K+ + K L
Sbjct: 195 TAGLPLPVAQALEKLTVGATTKDSIPVDGVRAIVKLDAKRPTQVPGFETAKPTLQQQLQA 254
Query: 597 MMNKDLLDSVIAYLKSQYSVT 617
+ + +I L +T
Sbjct: 255 IAAEKASAQMIGNLLKDAKIT 275
>gi|152968631|ref|YP_001333740.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238893026|ref|YP_002917760.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella pneumoniae
NTUH-K2044]
gi|330009278|ref|ZP_08306494.1| PPIC-type PPIASE domain protein [Klebsiella sp. MS 92-3]
gi|150953480|gb|ABR75510.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238545342|dbj|BAH61693.1| peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|238774029|dbj|BAH66526.1| peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae
NTUH-K2044]
gi|238774061|dbj|BAH66557.1| peptidyl-prolyl cis-trans isomerase [Klebsiella pneumoniae]
gi|328534855|gb|EGF61397.1| PPIC-type PPIASE domain protein [Klebsiella sp. MS 92-3]
Length = 428
Score = 52.2 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
N + D SRLA EGIN Y + K + ++V V
Sbjct: 107 NNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRIT 151
Score = 41.8 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 28/370 (7%), Positives = 88/370 (23%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q+V ++ + + +A++ +L +
Sbjct: 58 QQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + + V + + +
Sbjct: 118 LAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I ++ +E ++I D I
Sbjct: 178 HILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSA-DQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ + +K Q+ E F K + NQ + F
Sbjct: 297 IMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ P+ + + + ++ + +KD+ L + + +
Sbjct: 357 LMRLNKGQT-SGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|239999806|ref|ZP_04719730.1| putative cis-trans isomerase [Neisseria gonorrhoeae 35/02]
gi|240014962|ref|ZP_04721875.1| putative cis-trans isomerase [Neisseria gonorrhoeae DGI18]
gi|240017410|ref|ZP_04723950.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA6140]
gi|240116565|ref|ZP_04730627.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID18]
gi|240122031|ref|ZP_04734993.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID24-1]
Length = 332
Score = 52.2 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/174 (7%), Positives = 44/174 (25%), Gaps = 8/174 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 55 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 107
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P ++ + +A + + +
Sbjct: 108 IVQAGKRRNIQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSE 167
Query: 159 LSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ G+ + R D I +
Sbjct: 168 AEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIYDQ 221
>gi|157147527|ref|YP_001454846.1| peptidyl-prolyl cis-trans isomerase SurA [Citrobacter koseri ATCC
BAA-895]
gi|157084732|gb|ABV14410.1| hypothetical protein CKO_03327 [Citrobacter koseri ATCC BAA-895]
Length = 428
Score = 52.2 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
N + D SRLA +G++ Y K + ++V V
Sbjct: 107 NNMTLDQMRSRLAYDGLSYSTYRSQIRKEMIISEVRNNEVR 147
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 27/370 (7%), Positives = 89/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q+V ++ + + +A++ +L +
Sbjct: 58 QQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + + + + ++
Sbjct: 118 LAYDGLSYSTYRSQIRKEMIISEVRNNEVRRRVTILP-QEVDALAQQVGNQNDASTELNL 176
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ E D E A + + + D I
Sbjct: 177 SHILIPLPENPTSDQVSEAEARARSIVDEARNGSDFGKLAITYSADQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ T ++ K ++ + F K + NQ + F
Sbjct: 297 IMTDQQARLKLEEIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ + +KD+ L + + +
Sbjct: 357 LTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|240113831|ref|ZP_04728321.1| putative cis-trans isomerase [Neisseria gonorrhoeae MS11]
gi|240118789|ref|ZP_04732851.1| putative cis-trans isomerase [Neisseria gonorrhoeae PID1]
gi|240126540|ref|ZP_04739426.1| putative cis-trans isomerase [Neisseria gonorrhoeae SK-92-679]
gi|240129002|ref|ZP_04741663.1| putative cis-trans isomerase [Neisseria gonorrhoeae SK-93-1035]
gi|260439674|ref|ZP_05793490.1| putative cis-trans isomerase [Neisseria gonorrhoeae DGI2]
Length = 332
Score = 52.2 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/174 (7%), Positives = 44/174 (25%), Gaps = 8/174 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 55 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 107
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P ++ + +A + + +
Sbjct: 108 IVQAGKRRNIQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSE 167
Query: 159 LSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ G+ + R D I +
Sbjct: 168 AEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYDQ 221
>gi|206561958|ref|YP_002232721.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia J2315]
gi|198037998|emb|CAR53944.1| putative peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia J2315]
Length = 272
Score = 52.2 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 15/98 (15%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
+ G ++TV +V + + + S + S +
Sbjct: 11 ALAGALSGPVHAQTAATVATVNGTPITQTDVDTLLR--------------ASGQPDSPQI 56
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ I + L++ + Q E AD V + ++
Sbjct: 57 RQAIKNQLITRVLVQQAAEKANY-ADKPEVKAAMQQAK 93
Score = 47.2 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 25/201 (12%), Positives = 50/201 (24%), Gaps = 20/201 (9%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL----TDVKKDWKT 492
+Q + D P K + + + +++ + E+V V K
Sbjct: 71 QQAAEKANYADKPEVKAAMQQAKVTAEVQLYLRDHVKPEPVTDEQVKARYDELVAALGKN 130
Query: 493 VKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-----INRMDNE---- 540
+ K A VL K GK+F + + + ++
Sbjct: 131 EFKPRLIVVKDPVAAATVLSELKAGKSFDGLARQYSVAPSRDTGGELPWVSFNTPAVEGR 190
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
+ V V I + K+ + K L
Sbjct: 191 TAGLPLPVAQALEKLSVGAVTKDSIPVDGVRAIVKLDAKRPTQVPGFETAKPTLQQQLQA 250
Query: 597 MMNKDLLDSVIAYLKSQYSVT 617
+ + +I L +T
Sbjct: 251 IAAEKASAQMIGNLLKDAKIT 271
>gi|85859367|ref|YP_461569.1| peptidylprolyl isomerase [Syntrophus aciditrophicus SB]
gi|85722458|gb|ABC77401.1| peptidylprolyl isomerase [Syntrophus aciditrophicus SB]
Length = 364
Score = 52.2 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/157 (11%), Positives = 47/157 (29%), Gaps = 7/157 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN-QLVLEYSKEGKNFRDIGKNL 524
K + + V + KA + + + G +F ++ K+
Sbjct: 204 FYKKNQDRFKLPEAVHVRHILIARAPDDGEKVIAEKKAKAEGLRKKILAGADFAELAKSN 263
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
+ + +FS + ++ + V +V + +
Sbjct: 264 SDCPSKSAGGDLGIVSRGQMVKPFEDAIFSLKKNQIGPV-VQTEYGFHVVQVLDVRQPKT 322
Query: 585 QEKDK-----FISYLTQMMNKDLLDSVIAYLKSQYSV 616
D+ S+L Q ++ ++A LK + ++
Sbjct: 323 VALDERTKGMISSFLLQQKQQEAFRKMVASLKEKANI 359
>gi|331000013|ref|ZP_08323709.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
YIT 11859]
gi|329573161|gb|EGG54778.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
YIT 11859]
Length = 270
Score = 52.2 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 7/134 (5%)
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN--K 542
++K VKT EE L K G +F + K T+ ++ N
Sbjct: 133 EIKFRHILVKTPEEAREIIQSL-----KVGSDFGSLAKERSLDQSTSQNGGQIPFTNIRN 187
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
+ + + P ++ L Y V + + P ++ + + +
Sbjct: 188 VLVPGLAEAILALQPGDLLPVPFKSKLGYHVVLLEEKREVPFPSYEEVKPKVLSELERLQ 247
Query: 603 LDSVIAYLKSQYSV 616
+ L+ +
Sbjct: 248 TTEFLNDLQKDAKI 261
>gi|303257438|ref|ZP_07343451.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
[Burkholderiales bacterium 1_1_47]
gi|302859795|gb|EFL82873.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
[Burkholderiales bacterium 1_1_47]
Length = 261
Score = 52.2 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 7/134 (5%)
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN--K 542
++K VKT EE L K G +F + K T+ ++ N
Sbjct: 124 EIKFRHILVKTPEEAREIIQSL-----KVGSDFGSLAKERSLDQSTSQNGGQIPFTNIRN 178
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
+ + + P ++ L Y V + + P ++ + + +
Sbjct: 179 VLVPGLAEAILALQPGDLLPVPFKSKLGYHVVLLEEKREVPFPSYEEVKPKVLSELERLQ 238
Query: 603 LDSVIAYLKSQYSV 616
+ L+ +
Sbjct: 239 TTEFLNDLQKDAKI 252
>gi|217978373|ref|YP_002362520.1| hypothetical protein Msil_2224 [Methylocella silvestris BL2]
gi|217503749|gb|ACK51158.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length = 315
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/149 (11%), Positives = 41/149 (27%), Gaps = 18/149 (12%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ V S+ + K R + +++L
Sbjct: 37 AQAIVASINGDPITNIDIDQRMKLLR--------------VLRKPATREAAIESLFRDRL 82
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
E G+ + +I ++ + +S L G++E ++ ++
Sbjct: 83 QIHEAEKYGVNPRDADISQQIVKT----ATEMNLQPQALLSALQAAGVSEDQFKSYFRAN 138
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
L+ T +V G+ S +
Sbjct: 139 LAFTVLVQALNKGVEASETQVRAELEKQG 167
>gi|187928546|ref|YP_001899033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
12J]
gi|187725436|gb|ACD26601.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
12J]
Length = 265
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/202 (9%), Positives = 62/202 (30%), Gaps = 21/202 (10%)
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+L+ + K L +D + + V + + ++ K + +K
Sbjct: 65 DRELIEQDAAKRGLLERDDIQEQLAAARLNVLVAAEFEDYVKNSPATEDELHKQYDKIKA 124
Query: 496 A-------------EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NEN 541
+ + A ++ + K G F DI K + +D
Sbjct: 125 QFGNGKEYHAHHILVDKEADAKAIIAKL-KAGAKFEDIAKAQSKDKGSGANGGDLDWANP 183
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT------ 595
+ + + + + P++ + V ++ +++ + ++ L
Sbjct: 184 GTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDDTRDAKIPSYEEVKPQLLEMMMGD 243
Query: 596 QMMNKDLLDSVIAYLKSQYSVT 617
Q + +++ L+ + +
Sbjct: 244 QNWQRSKFQAMLKDLREKAKIQ 265
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 3/148 (2%)
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ K + DEL +Y+K K ++ + + ++ + +A LK G KF
Sbjct: 101 FEDYVKNSPATEDELHKQYDKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGAKFED 160
Query: 299 LAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A+ Q K + G P + ++ L K + FG+ + + +
Sbjct: 161 IAKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDD 220
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEK 383
+ + S++EVK + M + ++
Sbjct: 221 TRDAKIPSYEEVKPQLLEMMMGDQNWQR 248
>gi|268597648|ref|ZP_06131815.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA19]
gi|268551436|gb|EEZ46455.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae FA19]
Length = 333
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/174 (7%), Positives = 44/174 (25%), Gaps = 8/174 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 56 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 108
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P ++ + +A + + +
Sbjct: 109 IVQAGKRRNIQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSE 168
Query: 159 LSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ G+ + R D I +
Sbjct: 169 AEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYDQ 222
>gi|94677050|ref|YP_588994.1| peptidylprolyl cis-trans isomerase SurA [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
gi|122070619|sp|Q1LSS0|SURA_BAUCH RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|94220200|gb|ABF14359.1| peptidylprolyl cis-trans isomerase SurA [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
Length = 433
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/234 (10%), Positives = 53/234 (22%), Gaps = 9/234 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S E+ L+K I+D L+ +
Sbjct: 30 DQVVAIVNNDIILESELKILRDSIQNYAKLNYQ-----EQLEDNQLNKHIIDRLIIKKII 84
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + + ++ I S + Y + L
Sbjct: 85 QQQAKLSHITIAETKLNKIIHDLTSSQN----LSIAKLRHLMYSNRNIYDIYRAQLRQDL 140
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+V+ + + R L++ +P PS +
Sbjct: 141 LIAEVLNSALHRRITILPQEVEFLAKKIAIRKNTTFNLSHMLIPLPEKPSRKQKNEAEAL 200
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
E + L + + ++ S + ++ K +
Sbjct: 201 ALFLMAQSEKQNDFRELAIKYSTDTQMLNSFSMIGIQHTKLPLILAKHLYGAQK 254
>gi|312883922|ref|ZP_07743639.1| survival protein SurA [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368380|gb|EFP95915.1| survival protein SurA [Vibrio caribbenthicus ATCC BAA-2122]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 11/202 (5%)
Query: 21 LFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+ + FL ++ A+ + V V + S + K ++ G + S
Sbjct: 7 IILAFLSLNINHAVAQQEVALDQVAVIVNDGVILQSDIKTAMKTLKINAKKE-GQTLPSN 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
L++++ + L+ Q + IG++ D GR+ I K+N+ +
Sbjct: 66 SV----LEEQVTEKLILDTIQQQQADRIGVKVDDGRLNEAIEEI----AKNNQQTIAELK 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
L +EG+N + D K +S ++ V S +
Sbjct: 118 EELQKEGLNYALFRDQVRKEISVSEARNAIVRRRINILPSEVDHLASLLSQESSATVQYK 177
Query: 199 NRHVPAIADPSNAVLTQWFEKY 220
H+ + + +
Sbjct: 178 IGHIQLRVEDGDDKAQIKQQAM 199
>gi|206581089|ref|YP_002240483.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Klebsiella
pneumoniae 342]
gi|288937183|ref|YP_003441242.1| peptidylprolyl isomerase [Klebsiella variicola At-22]
gi|290512604|ref|ZP_06551970.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella sp. 1_1_55]
gi|206570147|gb|ACI11923.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Klebsiella
pneumoniae 342]
gi|288891892|gb|ADC60210.1| Peptidylprolyl isomerase [Klebsiella variicola At-22]
gi|289774945|gb|EFD82947.1| peptidyl-prolyl cis-trans isomerase SurA [Klebsiella sp. 1_1_55]
gi|294488615|gb|ADE88150.1| peptidyl-prolyl cis-trans isomerase [Pantoea agglomerans]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIVLQLGQKMGVKVSDDQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
N + D SRLA EGIN Y K + ++V V
Sbjct: 107 NNMTMDQMRSRLAYEGINYNTYRSQIRKEMLISEVRNNEVRRRIT 151
Score = 43.7 bits (100), Expect = 0.084, Method: Composition-based stats.
Identities = 27/370 (7%), Positives = 90/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q+V ++ + + +A++ ++ +
Sbjct: 58 QQLPDDATLRHQILERLIMDQIVLQLGQKMGVKVSDDQLDQAIANIAKQNNMTMDQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + + + V + + +
Sbjct: 118 LAYEGINYNTYRSQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I A ++ +E ++I D I
Sbjct: 178 HILIPLAENPTADEVAAAQEQANAIVEQARNGANFGKLAITYSA-DQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ + +K Q+ + F K + NQ + F
Sbjct: 297 IMNDAQAQAKLEQIAADIKSGKTTFAKAAKAFSEDPGSANQGGDLGWATPDIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ P+ + + + ++ + +KD+ L + + +
Sbjct: 357 LMRLNKGQT-SGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|86133089|ref|ZP_01051671.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
gi|85819952|gb|EAQ41099.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
Length = 544
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 56/494 (11%), Positives = 145/494 (29%), Gaps = 30/494 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ + F+++ + + ++++G +K+ S F +++ L +++E
Sbjct: 4 LILLLFIVFTTASI--AQKKDKVLITIGDEKIMVSEFKRVYEKNLD--------AIDNEE 53
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK--DNKFSHDVF 137
A+ + +K LD ++ + DI L + + + + +
Sbjct: 54 AKDL---EKNLDLFINYKLKVKEAYDIKL----DTLSSYVKEMKTYRNQLAAPYMQDSAY 106
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
VS L ++ + +L RT V ++ ++ R
Sbjct: 107 VSVLVKDAYFRTKNEVKAKHILIRTPKVATPKDTLKAYQKIMKIRDRILKGEDFEKVAEE 166
Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
+ A AD + + + Y + ++ +
Sbjct: 167 VSEDESARADAKSGRVGNKGNLGYFSAFKMVYPFENAAYTTKIDEVSMPFRTRFGYHILK 226
Query: 258 EKNKEKYFSPEIRTVEQLVFPN---QKEADEAFQSLKKGKKFIQLAEEQGKSL----SDI 310
+ ++ + + L+K ++F LA +
Sbjct: 227 VDGLRPSKGEVEVAHILITDKTAKGEEIINTVYNRLEKDEQFKMLARKYSDDTGSKSKGG 286
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
L F + + FSL K+G+++ FG+ I + P + + K+
Sbjct: 287 KLRRFGSGVMVQP-FDEVAFSLTKEGEYSKPFRTRFGWHIVQLIKKHPVKSFE-EMKKEL 344
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA-GKDVKGKE 429
+ + K RL++ + + S + +P ++
Sbjct: 345 TSKIRSSDRLQLSEKAVVNRLKKEYKIKEFDNAKSIFNNLKLRSIPSDSLQLPILKINEK 404
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT-DVKK 488
+ R K + + Y ++++ P L+E +
Sbjct: 405 SYTQADFVNYIKRRNNKPVFDLFNDFKSQEILEYYKSNLEKTEPDFAHILQEYEDGLLLF 464
Query: 489 DWKTVKTAEEVSSK 502
+ K ++ S
Sbjct: 465 ELMQQKIWDKASKD 478
Score = 38.3 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 10/236 (4%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ ++ + + G ++++ KG +K F
Sbjct: 144 YQKIMKIRDRILKGEDFEKVAEEVSEDESARADAKSGRVGNKGNLGYFSAFKMVYPFENA 203
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+ + Y +++ P++ +V T KTA+ N
Sbjct: 204 AYTTKIDEVSMPFRTRFGYHILKVDGLRPSKGEV------EVAHILITDKTAKG-EEIIN 256
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
+ K+ + K + + + FS E P
Sbjct: 257 TVYNRLEKDEQFKMLARKYSDDTGSKSKGGKLRRFGSGVMVQPFDEVAFSLTKEGEYSKP 316
Query: 565 IENGLSYVVFKVTNSKVGP--VQEKDKFISYLTQMMNKDLLD-SVIAYLKSQYSVT 617
+ + ++ + K + S + L + +V+ LK +Y +
Sbjct: 317 FRTRFGWHIVQLIKKHPVKSFEEMKKELTSKIRSSDRLQLSEKAVVNRLKKEYKIK 372
>gi|323964847|gb|EGB60314.1| ppic-type ppiase domain-containing protein [Escherichia coli M863]
gi|327255033|gb|EGE66636.1| chaperone surA [Escherichia coli STEC_7v]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.8 bits (103), Expect = 0.042, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQYDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|194099607|ref|YP_002002738.1| putative cis-trans isomerase [Neisseria gonorrhoeae NCCP11945]
gi|268595616|ref|ZP_06129783.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02]
gi|293398076|ref|ZP_06642281.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria gonorrhoeae
F62]
gi|193934897|gb|ACF30721.1| putative cis-trans isomerase [Neisseria gonorrhoeae NCCP11945]
gi|268549005|gb|EEZ44423.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 35/02]
gi|291611339|gb|EFF40409.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria gonorrhoeae
F62]
gi|317165096|gb|ADV08637.1| putative cis-trans isomerase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 333
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/174 (7%), Positives = 44/174 (25%), Gaps = 8/174 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 56 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 108
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P ++ + +A + + +
Sbjct: 109 IVQAGKRRNIQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSE 168
Query: 159 LSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ G+ + R D I +
Sbjct: 169 AEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIYDQ 222
>gi|171058521|ref|YP_001790870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
SP-6]
gi|170775966|gb|ACB34105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii
SP-6]
Length = 275
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/156 (10%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 469 KESIPARDRKLEEVLTDV--------KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
E E+ + +K++ E +A L+ E K G F ++
Sbjct: 113 NEYQKKNPVTDAEIKAEYDKVKSGAGEKEYHAKHILVEKEDEAKALIAEL-KGGAKFDEL 171
Query: 521 GKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS 579
K + +D + + + +++ Y + + +
Sbjct: 172 AKKASKDPGSAQNGGDLDWAAPANYVPEFSQAMVKLEKGKYTETAVKSQFGYHIILLDDV 231
Query: 580 KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ ++ + L Q + + + L+S+
Sbjct: 232 REAQFPPLEEVKAQLEQRLAQQKMGKYREELRSKAK 267
>gi|58584292|ref|YP_197865.1| parvulin-like peptidyl-prolyl isomerase, SurA [Wolbachia
endosymbiont strain TRS of Brugia malayi]
gi|58418608|gb|AAW70623.1| Parvulin-like peptidyl-prolyl isomerase, SurA [Wolbachia
endosymbiont strain TRS of Brugia malayi]
Length = 384
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/165 (6%), Positives = 33/165 (20%), Gaps = 11/165 (6%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V + + + + L +IL L+ +
Sbjct: 22 EIIADVNGEPISNLDIEKRINLTHSLFGTQS--------IDKNELKLQILKQLIDEIIII 73
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
+ + ++ + + LF + K + I L
Sbjct: 74 NEAQRLNIKLSDEELSNAVV---LFLTQSFKLKDNEVDQYAKEHNIGLNILKRQIECQLL 130
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
++ + + + + E
Sbjct: 131 WDKIIEVRIVPFINISDKEVNNAKGQIEKPDYLITFQEFIIPNQK 175
>gi|300939470|ref|ZP_07154132.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
gi|300455691|gb|EFK19184.1| PPIC-type PPIASE domain protein [Escherichia coli MS 21-1]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.8 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARTIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|157159524|ref|YP_001456842.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli HS]
gi|157065204|gb|ABV04459.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli HS]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.5 bits (102), Expect = 0.056, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDVFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|291042915|ref|ZP_06568656.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae DGI2]
gi|291013349|gb|EFE05315.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae DGI2]
Length = 333
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/174 (7%), Positives = 44/174 (25%), Gaps = 8/174 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 56 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 108
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P ++ + +A + + +
Sbjct: 109 IVQAGKRRNIQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSE 168
Query: 159 LSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ G+ + R D I +
Sbjct: 169 AEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSENAAVGAESTIRKIYDQ 222
>gi|323697783|ref|ZP_08109695.1| hypothetical protein DND132_0363 [Desulfovibrio sp. ND132]
gi|323457715|gb|EGB13580.1| hypothetical protein DND132_0363 [Desulfovibrio desulfuricans
ND132]
Length = 370
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/175 (7%), Positives = 39/175 (22%), Gaps = 5/175 (2%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + S + + + +IL +L+ + Q
Sbjct: 27 IVARVNGAPIHLSQLEF----QHDQFQEDSVGAYVPSVEKLRREYGEILSDLIVQELVVQ 82
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ L + + F + + + + K +
Sbjct: 83 ELARRDLSVTDEELRKAEDAVRA-DYPEGAFDQVLVEEYIDLKSWRTQLRYYLAQKKFFQ 141
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
+ + + ++ S+ +V+ + + L
Sbjct: 142 QVLRPQIKIDYKEAEKYYRDHISDFYLPESMRILVVRGPSRELVVKAVDKYLKDH 196
>gi|323975779|gb|EGB70875.1| ppic-type ppiase domain-containing protein [Escherichia coli
TW10509]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.5 bits (102), Expect = 0.052, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SVPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|320668802|gb|EFX35597.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
str. LSU-61]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTHLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|331650947|ref|ZP_08351975.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli M718]
gi|331051401|gb|EGI23450.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli M718]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.5 bits (102), Expect = 0.050, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|170736766|ref|YP_001778026.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia MC0-3]
gi|254249421|ref|ZP_04942741.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
PC184]
gi|124875922|gb|EAY65912.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
PC184]
gi|169818954|gb|ACA93536.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia MC0-3]
Length = 276
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 15/98 (15%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
+ G + TV +V + + + S + S +
Sbjct: 15 ALAGALSGPVHAQTAETVATVNGTPITQADVDTLLR--------------ASGQPDSPQI 60
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ I + L++ + Q E AD V + ++
Sbjct: 61 RQAIKNQLITRVLVQQAAEKANY-ADKPEVKAAMQQAK 97
Score = 44.8 bits (103), Expect = 0.042, Method: Composition-based stats.
Identities = 24/201 (11%), Positives = 50/201 (24%), Gaps = 20/201 (9%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL----TDVKKDWKT 492
+Q + D P K + + + +++ + E+V V K
Sbjct: 75 QQAAEKANYADKPEVKAAMQQAKVTAEVQLYLRDHVKPEPVTDEQVKARYDELVAALGKN 134
Query: 493 VKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-----INRMDNENKF- 543
+ K A VL K GK+F + + + ++ +
Sbjct: 135 EYKPRVIVVKDPVAAATVLSELKAGKSFDGLARQYSLAPSRDTGGELPWVSFNTPAAEGK 194
Query: 544 ---FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQ 596
+ V I + K+ + K L
Sbjct: 195 TARLPLPVAQALEKLTVGATTKDSIPVDGVRAIVKLDAKRPTQVPGFETAKPTLQQQLQA 254
Query: 597 MMNKDLLDSVIAYLKSQYSVT 617
+ + +I L +T
Sbjct: 255 IAAEKASAQMIGNLLKDAKIT 275
>gi|332095342|gb|EGJ00365.1| chaperone surA [Shigella boydii 5216-82]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNTAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.5 bits (102), Expect = 0.050, Method: Composition-based stats.
Identities = 33/373 (8%), Positives = 93/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV T +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHTRHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|126739402|ref|ZP_01755095.1| PPIC-type PPIASE domain [Roseobacter sp. SK209-2-6]
gi|126719502|gb|EBA16211.1| PPIC-type PPIASE domain [Roseobacter sp. SK209-2-6]
Length = 426
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/200 (10%), Positives = 56/200 (28%), Gaps = 18/200 (9%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ A++ + F + G + +L + S + ++V +
Sbjct: 22 SVSARLLGAAFALTFGL-GFAPSLEAQSLFAPAITVDSAVITNYELDQ-----RERFMAL 75
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
+ + + +K + L+ +++ G+E D + +
Sbjct: 76 LRTPGD--------IAEKAREELIDDRLKLAILDEFGIEVDDEEIKQGMTEL----AGRA 123
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
S + F+ L + GI + D +S + +G +
Sbjct: 124 NLSLEEFLGVLRQNGIAPETVRDLTRVGISWRNFLGARYLSQARPTEEEIDRAMGQAGSG 183
Query: 191 SVDYIVLNNRHVPAIADPSN 210
V ++ + S
Sbjct: 184 GVQVLLSELIVPINEQNASQ 203
>gi|116626458|ref|YP_828614.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Solibacter usitatus Ellin6076]
gi|116229620|gb|ABJ88329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Solibacter usitatus Ellin6076]
Length = 418
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 50/359 (13%), Positives = 105/359 (29%), Gaps = 73/359 (20%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + ++ ++ + A +L + L
Sbjct: 27 EEIAAKVNGDIITRGELEKKRQEIEAEAKRQGLTGARLQDAVKEA-HADVLSKEIDTLLL 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKM 158
Q +D+ + V +A + D F + + + +++
Sbjct: 86 VQKGKDLNISV-DADVTRRLAEI---QVQQKISDPDKFQQFIREQTGMTFEDFKQQMKNE 141
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ V+G V A L ++++
Sbjct: 142 MLTQRVIGQEV---------------------------------MRNITVPEAELQKYYD 168
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
++K + E + + E + +++ E
Sbjct: 169 EHKSEFMRKEAQVFLSQIVISTEGKSPEQVAAAE-------------------------- 202
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAK 334
K+A + KG+KF LA + + +GS K + + I AK
Sbjct: 203 --KKAKDLVARANKGEKFSDLARDNSDDVETAKNGGYVGSMPKGMMDKA--IEEIVFKAK 258
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
KG + + G+VI V + + SF EVK ++ +++ KA+ KV+ +L E
Sbjct: 259 KGFVSDPFKRAQGFVILKVEDRFEAGQASFDEVKNELQDRLTQPKANAKVRTYLTQLRE 317
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 26/193 (13%), Positives = 63/193 (32%), Gaps = 6/193 (3%)
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
K ++L + + + Y E + + + + K+ +
Sbjct: 139 KNEMLTQRVIGQEVMRNITVPEAELQKYYDEHKSEFMRKEAQVFLS-QIVISTEGKSPEQ 197
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
KA LV +K G+ F D+ ++ + T + + K I ++
Sbjct: 198 VAAAEKKAKDLVARANK-GEKFSDLARDNSDDVETAKNGGYVGSMPKGMMDKAIEEIVFK 256
Query: 556 PVEMVKCFPIENGLSYVVFKVTNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
+ P + +V+ KV + + + K++ LTQ + + + L+
Sbjct: 257 AKKGFVSDPFKRAQGFVILKVEDRFEAGQASFDEVKNELQDRLTQPKANAKVRTYLTQLR 316
Query: 612 SQYSVTVHDNLIQ 624
+ + D +
Sbjct: 317 EDAFLEIKDGYVD 329
>gi|15799738|ref|NP_285750.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
EDL933]
gi|15829312|ref|NP_308085.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
str. Sakai]
gi|16128047|ref|NP_414595.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str.
K-12 substr. MG1655]
gi|24111499|ref|NP_706009.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri 2a str.
301]
gi|26245979|ref|NP_752018.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli CFT073]
gi|30061620|ref|NP_835791.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri 2a str.
2457T]
gi|74310672|ref|YP_309091.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella sonnei Ss046]
gi|82542659|ref|YP_406606.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii Sb227]
gi|89106937|ref|AP_000717.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K-12
substr. W3110]
gi|91209115|ref|YP_539101.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UTI89]
gi|110804119|ref|YP_687639.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri 5 str.
8401]
gi|117622343|ref|YP_851256.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli APEC O1]
gi|157155530|ref|YP_001461225.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli E24377A]
gi|168751687|ref|ZP_02776709.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4113]
gi|168756884|ref|ZP_02781891.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4401]
gi|168762820|ref|ZP_02787827.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4501]
gi|168766748|ref|ZP_02791755.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4486]
gi|168776976|ref|ZP_02801983.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4196]
gi|168781757|ref|ZP_02806764.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4076]
gi|168785111|ref|ZP_02810118.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC869]
gi|170021589|ref|YP_001726543.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli ATCC
8739]
gi|170079716|ref|YP_001729036.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str.
K-12 substr. DH10B]
gi|170682162|ref|YP_001742174.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli SMS-3-5]
gi|188493538|ref|ZP_03000808.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli 53638]
gi|191169148|ref|ZP_03030907.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli B7A]
gi|191174100|ref|ZP_03035614.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli F11]
gi|193066223|ref|ZP_03047276.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli E22]
gi|193070992|ref|ZP_03051921.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli E110019]
gi|194434546|ref|ZP_03066804.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Shigella
dysenteriae 1012]
gi|194439697|ref|ZP_03071767.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli 101-1]
gi|195937729|ref|ZP_03083111.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
str. EC4024]
gi|208807378|ref|ZP_03249715.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4206]
gi|208812243|ref|ZP_03253572.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4045]
gi|208818190|ref|ZP_03258510.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4042]
gi|209398433|ref|YP_002268663.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4115]
gi|209917245|ref|YP_002291329.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli SE11]
gi|215485217|ref|YP_002327648.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O127:H6
str. E2348/69]
gi|217325032|ref|ZP_03441116.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. TW14588]
gi|218552638|ref|YP_002385551.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli IAI1]
gi|218556994|ref|YP_002389907.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli S88]
gi|218687931|ref|YP_002396143.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli ED1a]
gi|218693525|ref|YP_002401192.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 55989]
gi|218698475|ref|YP_002406104.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli IAI39]
gi|218703314|ref|YP_002410833.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UMN026]
gi|227885046|ref|ZP_04002851.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 83972]
gi|238899458|ref|YP_002925254.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
BW2952]
gi|253774915|ref|YP_003037746.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254037470|ref|ZP_04871547.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|254160178|ref|YP_003043286.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B str.
REL606]
gi|254791192|ref|YP_003076029.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
str. TW14359]
gi|256020107|ref|ZP_05433972.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella sp. D9]
gi|256025370|ref|ZP_05439235.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia sp. 4_1_40B]
gi|260842290|ref|YP_003220068.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
12009]
gi|260853267|ref|YP_003227158.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
11368]
gi|260866207|ref|YP_003232609.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
11128]
gi|261226813|ref|ZP_05941094.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
O157:H7 str. FRIK2000]
gi|261255216|ref|ZP_05947749.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O157:H7 str.
FRIK966]
gi|291280879|ref|YP_003497697.1| Chaperone surA precursor [Escherichia coli O55:H7 str. CB9615]
gi|293403128|ref|ZP_06647225.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
FVEC1412]
gi|293408148|ref|ZP_06651988.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B354]
gi|293417931|ref|ZP_06660553.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B185]
gi|293476717|ref|ZP_06665125.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B088]
gi|297516939|ref|ZP_06935325.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli OP50]
gi|298378656|ref|ZP_06988540.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
FVEC1302]
gi|300900923|ref|ZP_07119058.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
gi|300919606|ref|ZP_07136098.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
gi|300928648|ref|ZP_07144167.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
gi|300948657|ref|ZP_07162741.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
gi|300956983|ref|ZP_07169235.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
gi|300981029|ref|ZP_07175306.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
gi|300984196|ref|ZP_07176924.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
gi|301024798|ref|ZP_07188436.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
gi|301048439|ref|ZP_07195466.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
gi|301648380|ref|ZP_07248116.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
gi|306815347|ref|ZP_07449496.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli NC101]
gi|307136656|ref|ZP_07496012.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli H736]
gi|307311493|ref|ZP_07591135.1| Peptidylprolyl isomerase [Escherichia coli W]
gi|309796042|ref|ZP_07690454.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
gi|312966176|ref|ZP_07780402.1| chaperone surA [Escherichia coli 2362-75]
gi|312970148|ref|ZP_07784330.1| chaperone surA [Escherichia coli 1827-70]
gi|331640505|ref|ZP_08341653.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli H736]
gi|331645163|ref|ZP_08346274.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli M605]
gi|331661095|ref|ZP_08362027.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli TA206]
gi|331671573|ref|ZP_08372371.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli TA280]
gi|331681439|ref|ZP_08382076.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli H299]
gi|332281260|ref|ZP_08393673.1| survival protein surA [Shigella sp. D9]
gi|81174735|sp|P0ABZ8|SURA_ECO57 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|81174736|sp|P0ABZ7|SURA_ECOL6 RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|81174737|sp|P0ABZ6|SURA_ECOLI RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; AltName: Full=Survival protein A;
Flags: Precursor
gi|81174738|sp|P0ABZ9|SURA_SHIFL RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|121956477|sp|Q326I0|SURA_SHIBS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|121956482|sp|Q3Z5V6|SURA_SHISS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|122070645|sp|Q1RGE4|SURA_ECOUT RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|12512748|gb|AAG54358.1|AE005182_7 survival protein [Escherichia coli O157:H7 str. EDL933]
gi|26106376|gb|AAN78562.1|AE016755_62 Survival protein surA precursor [Escherichia coli CFT073]
gi|1786238|gb|AAC73164.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str.
K-12 substr. MG1655]
gi|13359514|dbj|BAB33481.1| survival protein [Escherichia coli O157:H7 str. Sakai]
gi|24050252|gb|AAN41716.1| survival protein [Shigella flexneri 2a str. 301]
gi|30039862|gb|AAP15596.1| survival protein [Shigella flexneri 2a str. 2457T]
gi|73854149|gb|AAZ86856.1| survival protein [Shigella sonnei Ss046]
gi|81244070|gb|ABB64778.1| survival protein [Shigella boydii Sb227]
gi|85674304|dbj|BAB96620.2| peptidyl-prolyl cis-trans isomerase [Escherichia coli str. K12
substr. W3110]
gi|91070689|gb|ABE05570.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli UTI89]
gi|110613667|gb|ABF02334.1| survival protein [Shigella flexneri 5 str. 8401]
gi|115511467|gb|ABI99541.1| survival protein [Escherichia coli APEC O1]
gi|157077560|gb|ABV17268.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli E24377A]
gi|169756517|gb|ACA79216.1| SurA domain [Escherichia coli ATCC 8739]
gi|169887551|gb|ACB01258.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli str.
K-12 substr. DH10B]
gi|170519880|gb|ACB18058.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli SMS-3-5]
gi|187767718|gb|EDU31562.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4196]
gi|188014319|gb|EDU52441.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4113]
gi|188488737|gb|EDU63840.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli 53638]
gi|189000667|gb|EDU69653.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4076]
gi|189356117|gb|EDU74536.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4401]
gi|189363909|gb|EDU82328.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4486]
gi|189366936|gb|EDU85352.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4501]
gi|189375016|gb|EDU93432.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC869]
gi|190900823|gb|EDV60613.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli B7A]
gi|190905594|gb|EDV65219.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli F11]
gi|192926148|gb|EDV80789.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli E22]
gi|192955722|gb|EDV86196.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli E110019]
gi|194417199|gb|EDX33310.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Shigella
dysenteriae 1012]
gi|194421382|gb|EDX37399.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli 101-1]
gi|208727179|gb|EDZ76780.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4206]
gi|208733520|gb|EDZ82207.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4045]
gi|208738313|gb|EDZ85995.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4042]
gi|209159833|gb|ACI37266.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. EC4115]
gi|209746874|gb|ACI71744.1| survival protein [Escherichia coli]
gi|209746876|gb|ACI71745.1| survival protein [Escherichia coli]
gi|209746878|gb|ACI71746.1| survival protein [Escherichia coli]
gi|209746880|gb|ACI71747.1| survival protein [Escherichia coli]
gi|209746882|gb|ACI71748.1| survival protein [Escherichia coli]
gi|209910504|dbj|BAG75578.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE11]
gi|215263289|emb|CAS07604.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
O127:H6 str. E2348/69]
gi|217321253|gb|EEC29677.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli O157:H7 str. TW14588]
gi|218350257|emb|CAU95940.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
55989]
gi|218359406|emb|CAQ96945.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
IAI1]
gi|218363763|emb|CAR01424.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli S88]
gi|218368461|emb|CAR16197.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
IAI39]
gi|218425495|emb|CAR06277.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
ED1a]
gi|218430411|emb|CAR11278.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
UMN026]
gi|222031887|emb|CAP74625.1| chaperone surA [Escherichia coli LF82]
gi|226840576|gb|EEH72578.1| conserved hypothetical protein [Escherichia sp. 1_1_43]
gi|227837875|gb|EEJ48341.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli 83972]
gi|238861990|gb|ACR63988.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
BW2952]
gi|242375892|emb|CAQ30573.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
BL21(DE3)]
gi|253325959|gb|ACT30561.1| Peptidylprolyl isomerase [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|253972079|gb|ACT37750.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli B
str. REL606]
gi|253976288|gb|ACT41958.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
BL21(DE3)]
gi|254590592|gb|ACT69953.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli
O157:H7 str. TW14359]
gi|257751916|dbj|BAI23418.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O26:H11 str.
11368]
gi|257757437|dbj|BAI28934.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O103:H2 str.
12009]
gi|257762563|dbj|BAI34058.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli O111:H- str.
11128]
gi|260450738|gb|ACX41160.1| SurA domain protein [Escherichia coli DH1]
gi|281177270|dbj|BAI53600.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli SE15]
gi|281599414|gb|ADA72398.1| Chaperone surA precursor [Shigella flexneri 2002017]
gi|284919836|emb|CBG32891.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase)
[Escherichia coli 042]
gi|290760752|gb|ADD54713.1| Chaperone surA precursor [Escherichia coli O55:H7 str. CB9615]
gi|291321170|gb|EFE60612.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B088]
gi|291430043|gb|EFF03057.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
FVEC1412]
gi|291430649|gb|EFF03647.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B185]
gi|291472399|gb|EFF14881.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli B354]
gi|294492943|gb|ADE91699.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli IHE3034]
gi|298280990|gb|EFI22491.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
FVEC1302]
gi|299880288|gb|EFI88499.1| PPIC-type PPIASE domain protein [Escherichia coli MS 196-1]
gi|300299732|gb|EFJ56117.1| PPIC-type PPIASE domain protein [Escherichia coli MS 185-1]
gi|300306726|gb|EFJ61246.1| PPIC-type PPIASE domain protein [Escherichia coli MS 200-1]
gi|300316273|gb|EFJ66057.1| PPIC-type PPIASE domain protein [Escherichia coli MS 175-1]
gi|300355586|gb|EFJ71456.1| PPIC-type PPIASE domain protein [Escherichia coli MS 198-1]
gi|300409065|gb|EFJ92603.1| PPIC-type PPIASE domain protein [Escherichia coli MS 45-1]
gi|300413352|gb|EFJ96662.1| PPIC-type PPIASE domain protein [Escherichia coli MS 115-1]
gi|300451883|gb|EFK15503.1| PPIC-type PPIASE domain protein [Escherichia coli MS 116-1]
gi|300463317|gb|EFK26810.1| PPIC-type PPIASE domain protein [Escherichia coli MS 187-1]
gi|301073515|gb|EFK88321.1| PPIC-type PPIASE domain protein [Escherichia coli MS 146-1]
gi|305851009|gb|EFM51464.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli NC101]
gi|306908472|gb|EFN38970.1| Peptidylprolyl isomerase [Escherichia coli W]
gi|307551900|gb|ADN44675.1| peptidyl-prolyl cis-trans isomerase [Escherichia coli ABU 83972]
gi|307629629|gb|ADN73933.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UM146]
gi|308120284|gb|EFO57546.1| PPIC-type PPIASE domain protein [Escherichia coli MS 145-7]
gi|309700266|emb|CBI99554.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase)
[Escherichia coli ETEC H10407]
gi|310337646|gb|EFQ02757.1| chaperone surA [Escherichia coli 1827-70]
gi|312289419|gb|EFR17313.1| chaperone surA [Escherichia coli 2362-75]
gi|312944661|gb|ADR25488.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O83:H1
str. NRG 857C]
gi|313646568|gb|EFS11029.1| chaperone surA [Shigella flexneri 2a str. 2457T]
gi|315059279|gb|ADT73606.1| peptidyl-prolyl cis-trans isomerase (PPIase) [Escherichia coli W]
gi|315134749|dbj|BAJ41908.1| chaperone surA precursor [Escherichia coli DH1]
gi|315285117|gb|EFU44562.1| PPIC-type PPIASE domain protein [Escherichia coli MS 110-3]
gi|315298427|gb|EFU57682.1| PPIC-type PPIASE domain protein [Escherichia coli MS 16-3]
gi|315616170|gb|EFU96789.1| chaperone surA [Escherichia coli 3431]
gi|320190424|gb|EFW65074.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
str. EC1212]
gi|320197500|gb|EFW72114.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli
WV_060327]
gi|320200427|gb|EFW75013.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli EC4100B]
gi|320647458|gb|EFX16253.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H-
str. 493-89]
gi|320652792|gb|EFX21030.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H-
str. H 2687]
gi|320658181|gb|EFX25910.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320663490|gb|EFX30774.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O55:H7
str. USDA 5905]
gi|323166105|gb|EFZ51884.1| chaperone surA [Shigella sonnei 53G]
gi|323171213|gb|EFZ56861.1| chaperone surA [Escherichia coli LT-68]
gi|323176362|gb|EFZ61954.1| chaperone surA [Escherichia coli 1180]
gi|323181750|gb|EFZ67163.1| chaperone surA [Escherichia coli 1357]
gi|323190264|gb|EFZ75540.1| chaperone surA [Escherichia coli RN587/1]
gi|323380164|gb|ADX52432.1| SurA domain protein [Escherichia coli KO11]
gi|323935106|gb|EGB31473.1| ppic-type ppiase domain-containing protein [Escherichia coli E1520]
gi|323939725|gb|EGB35927.1| ppic-type ppiase domain-containing protein [Escherichia coli E482]
gi|323945684|gb|EGB41732.1| ppic-type ppiase domain-containing protein [Escherichia coli H120]
gi|323950947|gb|EGB46824.1| ppic-type ppiase domain-containing protein [Escherichia coli H252]
gi|323955251|gb|EGB51024.1| ppic-type ppiase domain-containing protein [Escherichia coli H263]
gi|323960002|gb|EGB55648.1| ppic-type ppiase domain-containing protein [Escherichia coli H489]
gi|323970727|gb|EGB65981.1| ppic-type ppiase domain-containing protein [Escherichia coli TA007]
gi|324008401|gb|EGB77620.1| PPIC-type PPIASE domain protein [Escherichia coli MS 57-2]
gi|324012311|gb|EGB81530.1| PPIC-type PPIASE domain protein [Escherichia coli MS 60-1]
gi|324017678|gb|EGB86897.1| PPIC-type PPIASE domain protein [Escherichia coli MS 117-3]
gi|324118405|gb|EGC12299.1| ppic-type ppiase domain-containing protein [Escherichia coli E1167]
gi|326345227|gb|EGD68970.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
str. 1125]
gi|326346920|gb|EGD70654.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
str. 1044]
gi|331040251|gb|EGI12458.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli H736]
gi|331045920|gb|EGI18039.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli M605]
gi|331052137|gb|EGI24176.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli TA206]
gi|331071418|gb|EGI42775.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli TA280]
gi|331081660|gb|EGI52821.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli H299]
gi|332097929|gb|EGJ02902.1| chaperone surA [Shigella dysenteriae 155-74]
gi|332098944|gb|EGJ03895.1| chaperone surA [Shigella boydii 3594-74]
gi|332103612|gb|EGJ06958.1| survival protein surA [Shigella sp. D9]
gi|332341385|gb|AEE54719.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli UMNK88]
gi|332762289|gb|EGJ92556.1| chaperone surA [Shigella flexneri 2747-71]
gi|332762614|gb|EGJ92879.1| chaperone surA [Shigella flexneri 4343-70]
gi|332764896|gb|EGJ95124.1| chaperone surA [Shigella flexneri K-671]
gi|332768842|gb|EGJ99021.1| peptidyl-prolyl cis-trans isomerase [Shigella flexneri 2930-71]
gi|333009456|gb|EGK28912.1| chaperone surA [Shigella flexneri K-218]
gi|333011437|gb|EGK30851.1| chaperone surA [Shigella flexneri K-272]
gi|333021676|gb|EGK40925.1| chaperone surA [Shigella flexneri K-227]
gi|333022418|gb|EGK41656.1| chaperone surA [Shigella flexneri K-304]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.5 bits (102), Expect = 0.055, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|71066075|ref|YP_264802.1| peptidylprolyl isomerase [Psychrobacter arcticus 273-4]
gi|71039060|gb|AAZ19368.1| possible peptidylprolyl isomerase [Psychrobacter arcticus 273-4]
Length = 465
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/376 (8%), Positives = 95/376 (25%), Gaps = 60/376 (15%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
S + V + S I + Q G + A S L ++L+ L+
Sbjct: 56 NSTDGIIALVNENAILKSDLIAAIAQTQARAKA-AGEPI----ANSAQLQSEVLNALILR 110
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSP--------LFHGKDNKFSHDVFVSRLAREGINE 148
I+ +GL D + + + + + + L + I +
Sbjct: 111 ELQLSLIKRVGLNPDEAAINKRLEQIAKAEGLNSIAALQQRLDSAQAGSYATLRAQLIED 170
Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ ++ + ++ + + ++ V +++ + A
Sbjct: 171 AAIQALQQRQITNRVRISEQDIDAFLASPEAKRLNQSEYQTVHVRVPYMDDYSRLSEAQR 230
Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK----------------------- 245
++A+ + + + + +
Sbjct: 231 NDALKVAQKLRTRLLVPNIDVAEAIAASQGSYPIPLQGGDMGFHKAAALPTELSSEITKL 290
Query: 246 ---------IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
I ++ K ++ + +A K +
Sbjct: 291 EVGAVSAPLITPEGIDIIKLANKKSSDTMLVPQWNTRHILVKVDELQTDALAEQKINDLY 350
Query: 297 IQL-------------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
QL +++ G + L ++ + +++ GD++
Sbjct: 351 SQLRNGAAFDGLASTYSDDPGSAGRGGDLDWVGEDQMIGP--FEAMMKNTAVGDYSAPFK 408
Query: 344 GSFGYVIAHVSNIKPS 359
FG+ I + +
Sbjct: 409 TQFGWHILKIEGKRQQ 424
Score = 39.1 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 25/297 (8%), Positives = 73/297 (24%), Gaps = 4/297 (1%)
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ D+ ++ T + S + A +++ + + + +
Sbjct: 168 IEDAAIQALQQRQITNRVRISEQDIDAFLASPEAKRLNQSEYQTVHVRVPYMDDYSRLSE 227
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ L+ L T + + L
Sbjct: 228 AQRNDALKVAQKLRTRLLVPNIDVAEAIAASQGSYPIPLQGGDMGFHKAAALPTELSSEI 287
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
K + + + P+G + + + + ++T K N
Sbjct: 288 TKLEVGAVSAPLITPEGIDIIKLANKKSSDTMLVPQWNTRHILVKVDELQTDALAEQKIN 347
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
L + + G F + + + +D + + P
Sbjct: 348 DLYSQL-RNGAAFDGLASTYSDDPGSAGRGGDLDWVGEDQMIGPFEAMMKNTAVGDYSAP 406
Query: 565 IENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + K+ + V + + L Q + + + L++ + V
Sbjct: 407 FKTQFGWHILKIEGKRQQDVSDEYRRTMARQALYQRLAPQAKEDWLQELRAGAYIQV 463
>gi|333026460|ref|ZP_08454524.1| putative lipoprotein [Streptomyces sp. Tu6071]
gi|332746312|gb|EGJ76753.1| putative lipoprotein [Streptomyces sp. Tu6071]
Length = 277
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/191 (11%), Positives = 49/191 (25%), Gaps = 6/191 (3%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR--SVGLDKKILDN 92
+ VG ++ + + + + + SER S L + L
Sbjct: 67 GGTAHPGAAAVVGNTRITEAQLQHRVGELHDAVRELSSDAQTSERIISGSGSLARPTLQG 126
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
+V + + D G+ V A+ G + + L R G+
Sbjct: 127 MVRDRVVARAAADKGVTVSRAEVQSARAQLTQQAGGEQGLKVEW----LTRYGVPPSRLD 182
Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
D + ++ + + K + + V A + A
Sbjct: 183 DALRENIAEQKLYAALGADPSSPDGKATVDKTLAATAKKLKVDVNPRYGTWDAAKATRAD 242
Query: 213 LTQWFEKYKDN 223
+ +
Sbjct: 243 ARPAWLRDVSR 253
>gi|320182962|gb|EFW57830.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella flexneri CDC
796-83]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.5 bits (102), Expect = 0.055, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGDDFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|318061914|ref|ZP_07980635.1| lipoprotein [Streptomyces sp. SA3_actG]
Length = 255
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/191 (11%), Positives = 49/191 (25%), Gaps = 6/191 (3%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR--SVGLDKKILDN 92
+ VG ++ + + + + + SER S L + L
Sbjct: 45 GGTAHPGAAAVVGNTRITEAQLQHRVGELHDAVRELSSDAQTSERIISGSGSLARPTLQG 104
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
+V + + D G+ V A+ G + + L R G+
Sbjct: 105 MVRDRVVARAAADKGVTVSRAEVQSARAQLTQQAGGEQGLKVEW----LTRYGVPPSRLD 160
Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
D + ++ + + K + + V A + A
Sbjct: 161 DALRENIAEQKLYAALGADPSSPDGKATVDKTLAATAKKLKVDVNPRYGTWDAAKATRAD 220
Query: 213 LTQWFEKYKDN 223
+ +
Sbjct: 221 ARPAWLRDVSR 231
>gi|170768498|ref|ZP_02902951.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
albertii TW07627]
gi|170122602|gb|EDS91533.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
albertii TW07627]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.5 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVEALAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|315293370|gb|EFU52722.1| PPIC-type PPIASE domain protein [Escherichia coli MS 153-1]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKREQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|304311712|ref|YP_003811310.1| Peptidyl-prolyl cis-trans isomerase [gamma proteobacterium HdN1]
gi|301797445|emb|CBL45665.1| Peptidyl-prolyl cis-trans isomerase [gamma proteobacterium HdN1]
Length = 439
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 10/124 (8%)
Query: 51 VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
+ S +N +Q I+++ +E L ++L+ +++ + Q E +G+
Sbjct: 49 ILQSELLNRTRQIRIQIAKRG-----TEAPDEAKLQAQVLERMITESAELQLAEKMGVRV 103
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG-INEKEYIDHYTKMLSRTDVVGMFV 169
D + +A + N S + F + + E + Y + + ++ + V
Sbjct: 104 DDNAINEALANI----ARQNNLSLEQFQNVIEHEEGMTFASYREQVRREMTAHQLQQRRV 159
Query: 170 GGMR 173
Sbjct: 160 ASRI 163
>gi|257467204|ref|ZP_05631515.1| peptidyl-prolyl cis-trans isomerase [Fusobacterium gonidiaformans
ATCC 25563]
gi|315918334|ref|ZP_07914574.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
gi|313692209|gb|EFS29044.1| predicted protein [Fusobacterium gonidiaformans ATCC 25563]
Length = 549
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 62/561 (11%), Positives = 165/561 (29%), Gaps = 73/561 (13%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALF------SVSGSSTVVSVGRQKVPFSSFI 57
IRK + + K + ++ + + G S + + +KV
Sbjct: 2 AIRKFRK--IMKPVIFIVAIAMIGSGAWLTFTNLLQHHSAGETQYAYQLNGEKVSKVKIA 59
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ +++ + E + +++ Q ED+ ++ +
Sbjct: 60 REENNLMEQLNKMGQGKTSKELVSLI-----AFQKVINDELTLQLAEDMKIKVPSSEIKE 114
Query: 118 EIARSPLFHGKDNKF---------SHDVFVSRLAREGINEKEYIDH-------------- 154
E + G +F S F + L + +K
Sbjct: 115 EYEKIENSIGNKEQFKRMLSVQGYSKKSFKAMLEENLLLQKVMEKFAEEAKKSGKDGNLL 174
Query: 155 ------YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + D + ++ + + + + L A
Sbjct: 175 FQEALAKKRNEMKIDKLSPEYEKLQLKVVEEKDGFKITNVDMADRVTQLMLMTGEEEAKV 234
Query: 209 SNAVLTQW-----FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
+ V Q+ F K K + + + E E++ + +
Sbjct: 235 TEEVKKQFEEGIAFAKKAQEKGVLISKDLPINVQLAEYGKAFFEKLKSEVKIDEVELSRF 294
Query: 264 YFSPEIRTVEQ--------------------LVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
+ + R + + +E ++ + K L ++
Sbjct: 295 FQANHNRYNQHASIDVDVAVLKIVPSKEDIAAIEKKAEETLKSLKKENFAKIGADLQKKS 354
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
+++ LG F K + ++ FS + + VI FG + ++ ++ + +
Sbjct: 355 PETVIYEELGWFEKGAMVK-EFEEAAFSSKEAQIYPKVISTQFGKHLLYIQEVQENKVKA 413
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
+ +++A+Q I K+ ++ + ++L++ ++ I++ + + VD +G
Sbjct: 414 AHILFREVASQASIDKSLKEAESIKEKLDKKEVTFETLKNINKNL-LFAHTFTGVDKSGV 472
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
A+ + A G + + LEEV
Sbjct: 473 IQGFVTDKALVDTMYAAE----MNKVQIYSDDYAKKAGIIYLFSKTKQEEDKIVSLEEVQ 528
Query: 484 TDVKKDWKTVKTAEEVSSKAN 504
V+ ++++ + +E+ N
Sbjct: 529 DRVRDEYRSWRAQQELQKIMN 549
>gi|320179614|gb|EFW54563.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii ATCC
9905]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTAFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|261338952|ref|ZP_05966810.1| hypothetical protein ENTCAN_05153 [Enterobacter cancerogenus ATCC
35316]
gi|288318779|gb|EFC57717.1| peptidylprolyl cis-trans isomerase SurA [Enterobacter cancerogenus
ATCC 35316]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ + Q + +G++ ++ IA K N + D SR
Sbjct: 62 DDATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANI----AKQNNMTPDQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA +GI+ Y + K + ++V V
Sbjct: 118 LAYDGISYATYRNQIRKEMLISEVRNNEVR 147
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 28/370 (7%), Positives = 89/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q+V ++ + + +A++ + +
Sbjct: 58 QQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANIAKQNNMTPDQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + V + + +
Sbjct: 118 LAYDGISYATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I + E ++I D I
Sbjct: 178 HILIPLPENPTSDQAAEAESQARSIVEQARNGGDFGKLAITYSA-DQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
L + + G ++ +++ + EV +
Sbjct: 237 QELPSLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ T ++ +K Q+ + +F + K + NQ + +
Sbjct: 297 IMTDDQARAKLEQISADIKSGKTSFANAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ + +KD+ L + + +
Sbjct: 357 LMKMSKGQI-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLFNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V V
Sbjct: 416 EQRASAYVKV 425
>gi|317475723|ref|ZP_07934982.1| ppic-type ppiase domain-containing protein [Bacteroides eggerthii
1_2_48FAA]
gi|316908106|gb|EFV29801.1| ppic-type ppiase domain-containing protein [Bacteroides eggerthii
1_2_48FAA]
Length = 541
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 51/465 (10%), Positives = 115/465 (24%), Gaps = 26/465 (5%)
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+ + V+Y V V + E+ ++ ++ +
Sbjct: 78 KHATLGKYVEYFVNFKLKVGDAEAAGLDTAFAFREEVENYRARLVESYLTDTVEADAAAR 137
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
+ + + + + + + D + L+K
Sbjct: 138 RWYDRMKARHRGGQVRVRHIFKYLPQNVSSDALRDAVARMDSIHEYLRKNPGDNAFNACV 197
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
+ D S +P + + G + G I V +
Sbjct: 198 ERFSDDKRSLWVSWLQMPVE--FEDVAFELPVGGVSQPFFTPQGIHIVKVLERRE--LPP 253
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
F++VK +I + +A V+ ++L++ + L AG+
Sbjct: 254 FEKVKDEIMARQSRHEADRGVEVQVEKLKKEYRYTPDKAGVDELTNSGHTSRTLFTLAGR 313
Query: 424 DVKGKEVAA----IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
G + A P + F L ++T + ++ K
Sbjct: 314 SYTGTDFARFAAAYPAGVRKQLDAFIVKTVLDYENTCLEQKYPDLRCLVQNYKEQALLKK 373
Query: 480 EEVLTDVKKDWKTVKTAEEVSSK--ANQLVLEYSKEGKNFRDIGKNL---------GASL 528
K+ + K ++ E G + K +
Sbjct: 374 IIDKEIRKRAATDEAGLKAYFEKHRSDYQWEERRYRGIVLHGVSKRVVKQARKFLKSLPE 433
Query: 529 LTTNQINRMDNENKFFGYDGISQ-VFSGPVEMVKCFPIENG------LSYVVFKVTNSKV 581
R+ Q VF+ + G +S+ V KV
Sbjct: 434 EEWKDAIRLTFNAGAQPQIQTEQGVFAPGDNAYVDDLVFKGKDATPLVSFPFTAVLGKKV 493
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + L L + L+S V ++ +++
Sbjct: 494 KGPDDYQEVKDRLVADYQTYLDGRWVDRLRSSAKVEINQEVLKTV 538
Score = 38.7 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 57/481 (11%), Positives = 131/481 (27%), Gaps = 47/481 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+ +R + + K L V+F+ W + ++ + + V S F S+
Sbjct: 16 FDFVRFFKKVIMIKSCLAVIFL----WLGWNVFAQQ--DPVLMRINGKDVLRSEFEYSYN 69
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
++ +++ L L V + + L+ +
Sbjct: 70 RDKSLLA----------------LKHATLGKYVE------YFVNFKLKVGDAE-AAGLDT 106
Query: 122 SPLFHGKDNKFSHDVFVSRL-------AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
+ F + + + S L A + R + ++
Sbjct: 107 AFAFREEVENYRARLVESYLTDTVEADAAARRWYDRMKARHRGGQVRVRHIFKYLPQNVS 166
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE------KYKDNYRAPE 228
S+ L D R + + +N + S+ + W +++D
Sbjct: 167 SDALRDAVARMDSIHEYLRKNPGDNAFNACVERFSDDKRSLWVSWLQMPVEFEDVAFELP 226
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+S F + EL + E ++ V ++ + ++
Sbjct: 227 VGGVSQPFFTPQGIHIVKVLERRELPPFEKVKDEIMARQSRHEADRGVEVQVEKLKKEYR 286
Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
+L S + +L S A + + +K ++ Y
Sbjct: 287 YTPDKAGVDELTNSGHTSRTLFTLAGRSYTGTDFARFAAAYPAGVRKQLDAFIVKTVLDY 346
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQMRITK-----ASEKVKEDYKRLEEFLALGTSMDE 403
+ P Q K+ + I K A+ E+ + +
Sbjct: 347 ENTCLEQKYPDLRCLVQNYKEQALLKKIIDKEIRKRAATDEAGLKAYFEKHRSDYQWEER 406
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY 463
R + + +V A K +K +L F + ++ A D +Y
Sbjct: 407 RYRGIVLHGVSKRVVKQARKFLKSLPEEEWKDAIRLTFNAGAQPQIQTEQGVFAPGDNAY 466
Query: 464 M 464
+
Sbjct: 467 V 467
>gi|301019757|ref|ZP_07183903.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
gi|331661424|ref|ZP_08362348.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli TA143]
gi|300399094|gb|EFJ82632.1| PPIC-type PPIASE domain protein [Escherichia coli MS 69-1]
gi|331061339|gb|EGI33302.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli TA143]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 12/138 (8%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITI 152
Query: 176 NLLLDQAKRFYFENRSVD 193
++ N++
Sbjct: 153 LPQEVESLAQQVSNQNDA 170
Score = 44.5 bits (102), Expect = 0.055, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVSNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|291529969|emb|CBK95554.1| PPIC-type PPIASE domain [Eubacterium siraeum 70/3]
Length = 472
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 42/386 (10%), Positives = 107/386 (27%), Gaps = 20/386 (5%)
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
DE + Y+ + ++ T+ A ++ + L E+
Sbjct: 59 DEEKEYYQVKFKDFYPEYSFTIANYGLDETNSAYASYAQAYRKNIIDMLTNEKLILRKAK 118
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
LG L + + +K + + + + S +
Sbjct: 119 ELGL--------DQLTEEEMAEVEKAYTKNLSDWYASFEKKAKTALGISTDDTSGTEDSA 170
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
++ + + + ++K+ L + + +V
Sbjct: 171 NDEKILEKEKELFNEYIAGFGLTEDTFLMWQTNTAIQKKVNDYLLKDITVSDSEVDDYIT 230
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI------KESIPARDRKLEEVLT 484
+Q + S+ V +P + I + + E
Sbjct: 231 KLTAEAKQAYEKSASSYATDSEYKKVWIPKDARYIKYIAVGIASSDYAEINAARNESGAD 290
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD--NENK 542
D + D K + E+ KA+ + + + EG +F + K ++ + + ++ N
Sbjct: 291 DAEIDKKRDEKLAEIKEKADAALKKATAEGADFDAVVKEYSSAYSESTKGEQILVLNSKG 350
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQE---KDKFISYLTQMM 598
VF+ I Y + K V+++KV + L
Sbjct: 351 LISDALYDAVFALEKPGDISGLIPTDSGYYIVKYVSDAKVTDSDLSDYRKTVRQELLTSR 410
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++++ +S + +
Sbjct: 411 QSEKTNAILEEWRSAVNYEYDYEKLN 436
Score = 45.6 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 53/430 (12%), Positives = 129/430 (30%), Gaps = 50/430 (11%)
Query: 19 VVLFVPFLIWGLSDALFSVS---------------GSSTVV-----SVGRQK-----VPF 53
+L + G SD++ + V S+ ++ V F
Sbjct: 10 AILACTMMFSGCSDSILTSGTDSGTTSVENIWTAKDDDIVAWATSDSLSDEEKEYYQVKF 69
Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
F + + + ++ + + K I+D L + + + +++GL
Sbjct: 70 KDFYPEYSFTIANYG--LDETNSAYASYAQAYRKNIIDMLTNEKLILRKAKELGL---DQ 124
Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
E+A + K+ + F + + + ++
Sbjct: 125 LTEEEMAEVEKAYTKNLSDWYASFEKKAKTALGISTDDTSGTEDSANDEKILEKEKELFN 184
Query: 174 PSNL-LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
F + N ++ S++ + + K + K
Sbjct: 185 EYIAGFGLTEDTFLMWQTNTAIQKKVNDYLLKDITVSDSEVDDYITKLTAEAKQAYEKSA 244
Query: 233 SYILFDVHEKEKKIEI---------------SNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
S D K+ I E+ A ++ + + E+L
Sbjct: 245 SSYATDSEYKKVWIPKDARYIKYIAVGIASSDYAEINAARNESGADDAEIDKKRDEKLAE 304
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS----FSKEYIPDVSLADSIFSLA 333
+K ++ +G F + +E + S+ + G + + + +L D++F+L
Sbjct: 305 IKEKADAALKKATAEGADFDAVVKEYSSAYSESTKGEQILVLNSKGLISDALYDAVFALE 364
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
K GD + +I GY I + + +K + ++ ++ SEK +
Sbjct: 365 KPGDISGLIPTDSGYYIVKYVSDAKVTDSDLSDYRKTVRQELLTSRQSEKTNAILEEWRS 424
Query: 394 FLALGTSMDE 403
+ ++
Sbjct: 425 AVNYEYDYEK 434
>gi|212696153|ref|ZP_03304281.1| hypothetical protein ANHYDRO_00689 [Anaerococcus hydrogenalis DSM
7454]
gi|212676782|gb|EEB36389.1| hypothetical protein ANHYDRO_00689 [Anaerococcus hydrogenalis DSM
7454]
Length = 345
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/269 (10%), Positives = 62/269 (23%), Gaps = 12/269 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V VG +K+ S+ + M++ + L I+ L+ +
Sbjct: 48 KDAVAVVGGEKISKESYKDEMSFYSAMLASQ------------QQLKPSIVQMLIQDKLI 95
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
++ ++ D + + + G KF + ++ + E D +
Sbjct: 96 ADDMKKNDVKVDDKELNDKFLQYIQQFGGQEKFDKMLEDYNMSSDKFKETIKKDQIYQKH 155
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
V + S + N + K
Sbjct: 156 REWFEKKNPVSDKDIKKYYDEHKDTLSQVKASHILVEDENTAKEVKKKLDDGEDFAKLAK 215
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
A K F + K+ ++ + K + N
Sbjct: 216 EYSKDTANSAKGGDLGYFTKDKMVKEFADKAFAMKKGEISDPVKTSYGYHIIKVEDKKDN 275
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
E KK+ + +
Sbjct: 276 PDALKEEISKALNDKKYADYLTDLFNKAN 304
>gi|297538002|ref|YP_003673771.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
301]
gi|297257349|gb|ADI29194.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
301]
Length = 262
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 47/137 (34%), Gaps = 2/137 (1%)
Query: 483 LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NEN 541
K++ + ++A ++ + K G +F + K + + +
Sbjct: 125 KAYGDKEYSARHILVKTEAEAKDIIAQLGK-GADFAKLAKEKSMDPGSKEKGGDLGWFSP 183
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD 601
V V P + + V K+ +++ DK L + + +
Sbjct: 184 ATMVKPFSDAVAGLQKGAVSATPAQTQFGWHVIKLVDTRSAQPLPYDKVKDGLQKNLQQR 243
Query: 602 LLDSVIAYLKSQYSVTV 618
L+ +++ L+++ + +
Sbjct: 244 NLEKMMSDLRTKAKIDI 260
>gi|333010545|gb|EGK29978.1| chaperone surA [Shigella flexneri VA-6]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 45.2 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRANAYVKI 425
>gi|237704199|ref|ZP_04534680.1| surA [Escherichia sp. 3_2_53FAA]
gi|226902111|gb|EEH88370.1| surA [Escherichia sp. 3_2_53FAA]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.5 bits (102), Expect = 0.050, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPSSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|194429871|ref|ZP_03062383.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli B171]
gi|194412090|gb|EDX28400.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Escherichia
coli B171]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.5 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 93/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
+ I + + + G ++ +++ + EV +
Sbjct: 234 SRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|320103204|ref|YP_004178795.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida
ATCC 43644]
gi|319750486|gb|ADV62246.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida
ATCC 43644]
Length = 436
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV-NSERARSVGLDKKI 89
+ S S S+ VG + + E+ +Q+ G + + ++K +
Sbjct: 107 GGRVLSRSDSTLAARVGDAVITRGELDH----EIDRFAQQNGVSLATLTPEERLQVEKMV 162
Query: 90 LDNLVSGATLDQFIED 105
L+ + + Q
Sbjct: 163 LNERIDRELILQEARR 178
>gi|300821942|ref|ZP_07102086.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
gi|300905457|ref|ZP_07123223.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
gi|300923997|ref|ZP_07139998.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
gi|301305055|ref|ZP_07211156.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
gi|301330176|ref|ZP_07222838.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
gi|331666290|ref|ZP_08367171.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli TA271]
gi|331680626|ref|ZP_08381285.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli H591]
gi|300402673|gb|EFJ86211.1| PPIC-type PPIASE domain protein [Escherichia coli MS 84-1]
gi|300419766|gb|EFK03077.1| PPIC-type PPIASE domain protein [Escherichia coli MS 182-1]
gi|300525542|gb|EFK46611.1| PPIC-type PPIASE domain protein [Escherichia coli MS 119-7]
gi|300839662|gb|EFK67422.1| PPIC-type PPIASE domain protein [Escherichia coli MS 124-1]
gi|300843816|gb|EFK71576.1| PPIC-type PPIASE domain protein [Escherichia coli MS 78-1]
gi|315255671|gb|EFU35639.1| PPIC-type PPIASE domain protein [Escherichia coli MS 85-1]
gi|331066501|gb|EGI38378.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli TA271]
gi|331072089|gb|EGI43425.1| chaperone SurA (Peptidyl-prolyl cis-trans isomerase surA) (PPIase
surA) (Rotamase surA) [Escherichia coli H591]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.5 bits (102), Expect = 0.059, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|190571205|ref|YP_001975563.1| hypothetical protein WPa_0803 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190357477|emb|CAQ54911.1| hypothetical protein WP0803 [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
Length = 375
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/167 (8%), Positives = 40/167 (23%), Gaps = 11/167 (6%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V V + + ++ + + + +IL L+ +
Sbjct: 22 EIVADVNGEPISNLDIERRINFINSLLGTQ--------KINQKEVKSQILRQLIDEIIIV 73
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
+ + +E + + + LF + K D + + I+ L
Sbjct: 74 SEAQKMNIELSNEELNNAVT---LFLTQSLKLKADEVDQYVKKHNIDLNTLKKQIKCQLL 130
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
++ + V + + R E
Sbjct: 131 WNKIIEVGVVPLINISDQEVDDARKQKEKSDYLITFQEFIIPDQKIA 177
>gi|27065591|pdb|1M5Y|A Chain A, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
gi|27065592|pdb|1M5Y|B Chain B, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
gi|27065593|pdb|1M5Y|C Chain C, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
gi|27065594|pdb|1M5Y|D Chain D, Crystallographic Structure Of Sura, A Molecular Chaperone
That Facilitates Outer Membrane Porin Folding
Length = 408
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 25 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 76
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 77 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 131
Score = 44.5 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 34 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 93
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 94 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 153
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 154 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 213
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 214 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 273
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 274 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 333
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 334 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 392
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 393 WMQEQRASAYVKI 405
>gi|187733861|ref|YP_001878866.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii CDC
3083-94]
gi|187430853|gb|ACD10127.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Shigella boydii
CDC 3083-94]
Length = 428
Score = 52.2 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 43.7 bits (100), Expect = 0.095, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQVRNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPDSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|300816090|ref|ZP_07096313.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
gi|300531297|gb|EFK52359.1| PPIC-type PPIASE domain protein [Escherichia coli MS 107-1]
Length = 428
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.5 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSAAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|315185798|gb|EFU19564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
thermophila DSM 6578]
Length = 346
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/212 (12%), Positives = 65/212 (30%), Gaps = 18/212 (8%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF--INSWKQELGMISQKIG 72
KI L V+ + F + V V K+ +K ++ ++ +++G
Sbjct: 5 KIVLGVVVMGLF------PAFGQIIDAPVARV---KLTKLEVITQRQFKADVELLEKQLG 55
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
++ E K++LD + + Q E L + IA+ +
Sbjct: 56 RQLSLEE------RKQLLDARIGEILIYQAAEKEYLSVTQEELSQAIAQYKQSVAPNVS- 108
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ ++ G+ +++ + K L + G + + + N ++
Sbjct: 109 DQEFRRLIESQGGMTWEQFQEQMKKRLIAEKYLYQKKGQEIQNVPAPSEEEIRRVYNENI 168
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ L+ +K N
Sbjct: 169 SNFTAPEMVRYSHIFIDTRGLSDEEKKKAYNR 200
>gi|323160075|gb|EFZ46037.1| chaperone surA [Escherichia coli E128010]
Length = 428
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 45.2 bits (104), Expect = 0.031, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 93/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I ++ + + G ++ +++ + EV +
Sbjct: 234 GRIQELPEIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|317128538|ref|YP_004094820.1| hypothetical protein Bcell_1827 [Bacillus cellulosilyticus DSM
2522]
gi|315473486|gb|ADU30089.1| hypothetical protein Bcell_1827 [Bacillus cellulosilyticus DSM
2522]
Length = 179
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 35/124 (28%), Gaps = 7/124 (5%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M + K + + V+L + + V + V +V + + + I
Sbjct: 1 MFKYF-KFNNSIFIISIAVLLILILAPFNKGKMEEQVEIDAVVATVNGENIIYKDVIKVK 59
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + L + ++ + L Q + + +E V ++
Sbjct: 60 NSMR------LKKYNDLTNNNEDKLTEAAIEQRIIHRLLIQEAQRLNIEVSDEEVAIQLQ 113
Query: 121 RSPL 124
Sbjct: 114 LIKE 117
>gi|223936140|ref|ZP_03628054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
gi|223895362|gb|EEF61809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
Length = 350
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/191 (9%), Positives = 51/191 (26%), Gaps = 5/191 (2%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + ++ I + + R V L K L NL+ +
Sbjct: 61 AIVADSIITYQQVELLVGRDADFIRHQYQNNPQEYQLRMVDLMGKGLTNLIQRELVLHDF 120
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM-LSRT 162
++ G + + K+ +L +EG+ +++ + R
Sbjct: 121 QNSGFNVPETIIDEIVQD----RIKEKYSDRVQLTKQLQKEGLTFEQFKKQIRDDLIYRE 176
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
+ + + + + + D I + AD + + ++
Sbjct: 177 MYRKNVPETIMSPHKIETFYQEHQADFKVADEIKTRIIVLNKPADDTEGSTKKRAQEIIS 236
Query: 223 NYRAPEYKRIS 233
+
Sbjct: 237 QLKNGAAFSEM 247
>gi|325846702|ref|ZP_08169617.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481460|gb|EGC84501.1| putative peptidylprolyl isomerase PrsA1 [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 345
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/269 (10%), Positives = 62/269 (23%), Gaps = 12/269 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V VG +K+ S+ + M++ + L I+ L+ +
Sbjct: 48 KDAVAVVGGEKISKESYKDEMSFYSAMLASQ------------QQLKPSIVQMLIQDKLI 95
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
++ ++ D + + + G KF + ++ + E D +
Sbjct: 96 ADDMKKNDVKVDDKELNDKFLQYIQQFGGQEKFDKMLEDYNMSSDKFKETIKKDQIYQKH 155
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
V + S + N + K
Sbjct: 156 REWFEKKNPVSDKDIKKYYDEHKDTLAQVKASHILVEDENTAKEVKKKLDDGEDFAKLAK 215
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
A K F + K+ ++ + K + N
Sbjct: 216 EYSKDTANSAKGGDLGYFTKDKMVKEFADKAFAMKKGEISDPVKTSYGYHIIKVEDKKDN 275
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
E KK+ + +
Sbjct: 276 PDALKEEISKALNDKKYADYLTDLFNKAN 304
>gi|157960692|ref|YP_001500726.1| SurA domain-containing protein [Shewanella pealeana ATCC 700345]
gi|157845692|gb|ABV86191.1| SurA domain [Shewanella pealeana ATCC 700345]
Length = 434
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/198 (12%), Positives = 60/198 (30%), Gaps = 10/198 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + S K + G + S+ A L ++++ L+
Sbjct: 28 DRVTVQINEGIILESEVAGMVKTIKAN-AANAGQKLPSDTA----LRTQVIERLILTRLQ 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + IGL ++ I K+ K + +++ EG +Y + + +
Sbjct: 83 LQMADRIGLHIGDLQLDQTIENI----AKEQKITVAQMKAQIESEGTTFAQYREQLREEI 138
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ ++ + V + + + + H+ PS+A Q
Sbjct: 139 TLGEIQRIQVQRRIQVSPQEINNLVKLINEQGLKEVEFQIGHILIDV-PSDANSQQLEAA 197
Query: 220 YKDNYRAPEYKRISYILF 237
K + + +
Sbjct: 198 SKRSATVMKRLKDGDDFR 215
Score = 41.8 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 16/203 (7%), Positives = 64/203 (31%), Gaps = 4/203 (1%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD- 485
G + LF D + +++ ++ + ++++EV +
Sbjct: 231 GIWDYMNINEMPTLFAEVVGDAKTGDIIGPIKSASGFHIIKVMDARGLQTKEVQEVKSRH 290
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
+ + + E S ++ + + F D+ + + + + +
Sbjct: 291 ILLKPSPILSEERAKSMMDRFLAQVKSGEAKFEDLARQYSEDPGSAAKGGELGWADPNIY 350
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDL 602
SQ + P + + + ++ + +K ++ + + +
Sbjct: 351 VPAFSQELNSLEVGAYSEPFRSTHGWHIVQLEEKRTTDATDKFNTNRAHQLIYRRKFNEE 410
Query: 603 LDSVIAYLKSQYSVTVHDNLIQR 625
L + + ++++ + + + R
Sbjct: 411 LQNWLDEMRAEAFIDIFEPETNR 433
>gi|89097668|ref|ZP_01170556.1| hypothetical protein B14911_14772 [Bacillus sp. NRRL B-14911]
gi|89087527|gb|EAR66640.1| hypothetical protein B14911_14772 [Bacillus sp. NRRL B-14911]
Length = 251
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 6/168 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
TV V K+ F + Q G ++ A S + ++ +D+LV + +
Sbjct: 61 KETVAVVNDDKILGKDFNGMLQNAQMSY-QMSGQDPTTKEA-SEQIKQQTIDSLVGQSLI 118
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + G +A V G++ K + F + L G+ E+E + +
Sbjct: 119 MQEAAEKGYKASEEEVQGQLDEIK----KQYEGDDKKFAAALKDAGLTEEELKGQISDSI 174
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ + + + + V +
Sbjct: 175 VSNKYIDKEIKADAATEEEVKAYYDQVKASTPEGQSVPEYEEIKTKIQ 222
>gi|150389947|ref|YP_001319996.1| hypothetical protein Amet_2178 [Alkaliphilus metalliredigens QYMF]
gi|149949809|gb|ABR48337.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
Length = 218
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 52/161 (32%), Gaps = 2/161 (1%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG--LDKKILDNLVSGATLDQFIE 104
Q++ F + + Q+ G SE + + +++ L+NL+ L Q
Sbjct: 35 NSQEIRRVDFESVVENTKLYYQQQFGIDFQSEDDKGLIALIEEDALNNLIEQELLLQSTL 94
Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+ + + EI + + +FS + V++L + E + + + +V
Sbjct: 95 ERDYQVSKDELNYEIEQIKSQFESEEEFSMALEVNQLTLALLEEDIANEIMLRQYIQDEV 154
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
V + + ++ + +
Sbjct: 155 GDPTVSEEEMMAMYDEYSETMEDLPSFEEIQPQLQEEIKYQ 195
>gi|323491007|ref|ZP_08096201.1| hypothetical protein GPDM_16601 [Planococcus donghaensis MPA1U2]
gi|323395363|gb|EGA88215.1| hypothetical protein GPDM_16601 [Planococcus donghaensis MPA1U2]
Length = 313
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 24/108 (22%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
V + L+ + F+ W + + + V SV + + + L + ++ G
Sbjct: 31 VIGVLLLFNILWFIAWLIPND---TGKAEKVASVSGEAITREEW-------LASMEEQHG 80
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ L LV+ + +D G+E + E+A
Sbjct: 81 --------------REALLELVNEKVMATAAQDYGIEVSDKEIDLELA 114
>gi|227499518|ref|ZP_03929625.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
gi|227218397|gb|EEI83648.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098]
Length = 308
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/200 (9%), Positives = 53/200 (26%), Gaps = 6/200 (3%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
LV+ ++ S + + S + + SV + + + K S+ G +
Sbjct: 16 LVLAIFSIILL-TSCSKTNFSNENVIASVNNKTISKDLYSKELKFYQSYYSKVYGENFLN 74
Query: 78 ERAR-----SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
E+ L + ++D+++ + +E ++ D + ++
Sbjct: 75 EKNDRGKTNDEVLREDLVDSMIKDQVMLNDLEKNKIKLDDNKSNELKKLISDKLNGEDSL 134
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
++ + N+ Y D K + + +
Sbjct: 135 KANIKALGVNENTFNDIIYNDSIRKAHYELFLKINKIKDSDVLEFYKKNKYIQKLYKYNA 194
Query: 193 DYIVLNNRHVPAIADPSNAV 212
+A
Sbjct: 195 LVFEDEQEAKLIKDSIKDAN 214
>gi|254384868|ref|ZP_05000204.1| lipoprotein [Streptomyces sp. Mg1]
gi|194343749|gb|EDX24715.1| lipoprotein [Streptomyces sp. Mg1]
Length = 210
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 6/141 (4%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
S T VG Q++ S+ + ++ A + L++ L+ ++
Sbjct: 28 SSDPRPGTAAVVGGQRITTSALQAQVNDVR---GAQDRSEQSAPAAGTARLERMKLNKMI 84
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L++ +D G+ + + G K RL + + +
Sbjct: 85 QLRILEETAKDAGITVSPREIEDVRKETTQQSGGAAKMEQLALAQRL---PVAPDQIDED 141
Query: 155 YTKMLSRTDVVGMFVGGMRPS 175
L + F
Sbjct: 142 IRFQLLLGKIKEKFGDDAFVP 162
>gi|332558337|ref|ZP_08412659.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
sphaeroides WS8N]
gi|332276049|gb|EGJ21364.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
sphaeroides WS8N]
Length = 405
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 18/161 (11%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+T+V+ +V+ AL + + V + + F
Sbjct: 2 KTFVSHCLALVVAAGLTFTSAPGALAQNLFAPRL-VVNDRVITNYEFEQRV-----RFLT 55
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+G + E K+ +D L+ E GL+A ++ +
Sbjct: 56 ILGATGDVE--------KQAMDALIEDKIRFDAAEQAGLKATEEQIKEGMEE----FAGR 103
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
S + F + L + G+ + + D L +++ G
Sbjct: 104 ANLSAEQFAAELGKAGVAVETFRDFVHAGLIWRELMRAKFG 144
Score = 40.6 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 1/88 (1%)
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKDK 589
Q+ R D ++ V + G V+ V ++ +
Sbjct: 316 EQQLRRTTLPLAQVPQDVALELAGLDAGEVSSSALPGGTRRVLMLCARRPVSAEPIDRGR 375
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
L D+ +A L++ +
Sbjct: 376 LAQALANQSISASADAYMADLRANAIIR 403
>gi|189425796|ref|YP_001952973.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
SZ]
gi|189422055|gb|ACD96453.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter lovleyi
SZ]
Length = 335
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/250 (10%), Positives = 71/250 (28%), Gaps = 11/250 (4%)
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
+ + L +A T + ++ ++ L + ++
Sbjct: 84 QQFLLNQMLGGELMYQVAKATPVKDLDKKIDDAVTKLKARFKTNDEYLQGLKEQGLSEKD 143
Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT------DVKKDWKT 492
L + + V +P ++KE + + D K
Sbjct: 144 LRELIRRNVIIENHIEQVIVPKQVVTDAEMKEFYDKNPETFTQPEQVRASHILITLDAKA 203
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
++ + + + +L+ K G +F + + + +
Sbjct: 204 TDADKKKAKEKIEDLLKQVKAGADFAKLAQENSGCPSSKQGGDLGYFGKGQMVKPFEETA 263
Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK----DLLDSVIA 608
F+ V +E Y + K+T K D+ + + + + + +++ +
Sbjct: 264 FAMKPGDV-SGVVETQFGYHIIKLTEKKAAAKVAFDEVKAKIADSLKRKKVTEAINATLE 322
Query: 609 YLKSQYSVTV 618
K + + V
Sbjct: 323 DAKKKAKIEV 332
Score = 44.5 bits (102), Expect = 0.050, Method: Composition-based stats.
Identities = 13/158 (8%), Positives = 47/158 (29%), Gaps = 10/158 (6%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
+ S V V +P + + S + + + +L+ ++
Sbjct: 39 TNSLPDPVARVNGVAIPAADLQKALNAFSKSPSAAQVPP-----GKEKEVQQFLLNQMLG 93
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
G + Q + ++ ++ + + + D ++ L +G++EK+ +
Sbjct: 94 GELMYQVAKATPVKDLDKKIDDAVTKLKARFKTN-----DEYLQGLKEQGLSEKDLRELI 148
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + + + + + +
Sbjct: 149 RRNVIIENHIEQVIVPKQVVTDAEMKEFYDKNPETFTQ 186
>gi|170725378|ref|YP_001759404.1| SurA domain-containing protein [Shewanella woodyi ATCC 51908]
gi|169810725|gb|ACA85309.1| SurA domain [Shewanella woodyi ATCC 51908]
Length = 434
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 11/152 (7%)
Query: 21 LFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
L FL S + + + V + + S K + G + S+
Sbjct: 7 LIFAFLALAASHTVQAQTAPLDRVSVQINEGILLESEITGMIKTVKANATA-AGQALPSD 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
A L ++++ L+ Q + IGL ++ I + D
Sbjct: 66 SA----LRTQVIERLIMTRLQMQMADRIGLHIGDLQLDQTIGNIAKEQN----LTVDQMQ 117
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++A EG++ +Y + + ++ ++ + V
Sbjct: 118 LKIAEEGMSWNQYREQLREEITLGEIQRIQVQ 149
Score = 42.2 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 17/195 (8%), Positives = 65/195 (33%), Gaps = 5/195 (2%)
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-V 486
+ + L V G P + G ++ ++ ++ + ++++EV + +
Sbjct: 233 WDYMNVNEMPTLFAEVLGNAKPGDVIGPIRSGAGFHII-KVLDARGLQTKEIDEVRSRHI 291
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
+ + E + ++ V E +F + + + + + +
Sbjct: 292 LIKPSPILSEERAKAMLDKFVKEIRTGDADFAALARQYSEDPGSGAKGGELGWADPSVYV 351
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLL 603
+Q + P + + + ++ + +K ++ + + + L
Sbjct: 352 PAFAQTLNALELNEISEPFRSSHGWHIVQLEERRKTDATDKFNTNRAHQLIFRRKFNEEL 411
Query: 604 DSVIAYLKSQYSVTV 618
+ + ++S+ + V
Sbjct: 412 QNWLDEMRSEAYIEV 426
>gi|85706339|ref|ZP_01037433.1| PPIC-type PPIASE domain protein [Roseovarius sp. 217]
gi|85669112|gb|EAQ23979.1| PPIC-type PPIASE domain protein [Roseovarius sp. 217]
Length = 420
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/164 (7%), Positives = 41/164 (25%), Gaps = 20/164 (12%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSS---TVVSVGRQKVPFSSFINSWKQELGMIS 68
+ + + + GL + V + + V Q + +
Sbjct: 10 ILRRTLAALTLAAIGLTGLPGGVSPVQAQNLFAPAIHVNDQAITGYELQQ-----RARML 64
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
+ + + L+ +GL + V +
Sbjct: 65 TLFRAPGDP--------RRLAREQLIEERIKLDAARAVGLVVEDDMVRTGMEE----FAG 112
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
+ D +S L G++++ + + ++ ++
Sbjct: 113 RANMTADQLISSLEEAGVSQQSFREFVRAGITWRELTRAQFASR 156
>gi|157803578|ref|YP_001492127.1| protein export protein PrsA precursor [Rickettsia canadensis str.
McKiel]
gi|157784841|gb|ABV73342.1| Protein export protein PrsA precursor [Rickettsia canadensis str.
McKiel]
Length = 282
Score = 51.8 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 61/161 (37%), Gaps = 6/161 (3%)
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+Y+ I + + + K+ K + +AN++ + SK G NF +
Sbjct: 113 NYIKSNITDKMFDDEYNKYVGNLKGKEQIKVAHILVKSQKEANEIKTKLSKGG-NFTKLA 171
Query: 522 KNLGASLLTTNQINRMD----NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT 577
+ L + + + N+ + + F+ V V P++ + + KV
Sbjct: 172 EELSLDKASASNGGVIGDIILNQPGQLVPEFEKKAFALKVNEVST-PVKTDFGWHIIKVL 230
Query: 578 NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K P+ K+ + ++ +L I+ L+++ + +
Sbjct: 231 EKKPVPIPTKEDAKVTIDNILAAAILKQYISDLEAKADLKI 271
>gi|332525967|ref|ZP_08402108.1| putative exported isomerase [Rubrivivax benzoatilyticus JA2]
gi|332109518|gb|EGJ10441.1| putative exported isomerase [Rubrivivax benzoatilyticus JA2]
Length = 270
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/127 (10%), Positives = 46/127 (36%), Gaps = 2/127 (1%)
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN-ENKFFGYD 547
+++ E +A +L+ + K G +F ++ K + +D + + +
Sbjct: 136 EYRARHILVETEDEAKKLIAQI-KSGGSFEELAKKHSKDPGSGENGGDLDFAKPDAYVPE 194
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ + + P+++ + + ++ +++ D + Q + + L
Sbjct: 195 FSQAMAALKKGEMTQTPVKSQFGWHIIRLDDTREAQFPAFDDVKDQIKQRIEQARLQQYQ 254
Query: 608 AYLKSQY 614
L+ +
Sbjct: 255 EELRKKA 261
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 32/186 (17%), Positives = 67/186 (36%), Gaps = 4/186 (2%)
Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
A + ++ I K +++ + QAEY+K K S
Sbjct: 76 VQEAEKKGIATSADYKAQMELARQSILIRELFDSYRKTHPVTDADAQAEYDKFKAA-ASG 134
Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVS 324
++ + EA + +K G F +LA++ K G F+K
Sbjct: 135 TEYRARHILVETEDEAKKLIAQIKSGGSFEELAKKHSKDPGSGENGGDLDFAKPDAYVPE 194
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ ++ +L K + FG+ I + + + + +F +VK I ++ + +
Sbjct: 195 FSQAMAALKKGEMTQTPVKSQFGWHIIRLDDTREAQFPAFDDVKDQIKQRIEQARLQQYQ 254
Query: 385 KEDYKR 390
+E K+
Sbjct: 255 EELRKK 260
Score = 37.9 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V + VP S +Q Q+IG L ++ D +V
Sbjct: 28 QNIAVVNGKPVPKSRVETLLQQA-ARAGQQIGP----------ELQQQARDQVVLREIFV 76
Query: 101 QFIEDIGLEADHG 113
Q E G+
Sbjct: 77 QEAEKKGIATSAD 89
>gi|309388299|gb|ADO76179.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Halanaerobium
praevalens DSM 2228]
Length = 343
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/210 (8%), Positives = 62/210 (29%), Gaps = 10/210 (4%)
Query: 12 WVAKIFLVVLFVPFLIWGLS--DALFSVSGSSTVVSVGRQKVPFSSFIN-----SWKQEL 64
+ I +++L VP + + + + V +++ + ++
Sbjct: 9 VITGIIMLILAVPAAAQDIQEVNETVTEADQEIAAYVNSEEISMQELEQFAGVRNILMQI 68
Query: 65 GMISQKIGFVVNSERARSV---GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+Q+ G V+ A K L+ L++ + Q + L+ + +
Sbjct: 69 LQTNQEFGSVMLQTEAGQQVVDEFQKLKLEQLITNKLMVQEAKSRKLKVSDEEMNKIFDQ 128
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+ N+ S + + + ++G + + + + + + + +
Sbjct: 129 QIQALKQQNQLSEEQLEAAIQKQGFESMKEYKELFFENNMNGFLINKLREEVVNKVKVSE 188
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ + + + +
Sbjct: 189 EEVKDYYQNNKKQFESEAEKKVSHILFDDQ 218
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 33/294 (11%), Positives = 94/294 (31%), Gaps = 18/294 (6%)
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
+ + ++ Q ++ + ++ + V E K E L M
Sbjct: 48 EEISMQELEQFAGVRNILMQILQTNQEFGSVMLQTEAGQQVVDEFQKLKLEQLITNKLMV 107
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ ++ K+ D + + ++ + +EQL + + K++ + +
Sbjct: 108 QEAKSRKLKVSDEEMNKIFDQQIQALKQQNQLSEEQLEAAIQKQGFESMKEYKELFFENN 167
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN------------QLVLEY 510
I + K++ +VK ++ K E ++ + VL
Sbjct: 168 MNGFLINKLREEVVNKVKVSEEEVKDYYQNNKKQFESEAEKKVSHILFDDQAKAEKVLAE 227
Query: 511 SKEGKNFRDIGKNL--GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
K G +F ++ K G + + + + V + P++
Sbjct: 228 IKAGADFAEMAKKHSTGPTADKGGNLGYVSANERGLDQTFRDAAMKLEVGEITNEPVKTQ 287
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK----DLLDSVIAYLKSQYSVTV 618
+ + KVT+ + V++ ++ + + + + L+ + + +
Sbjct: 288 FGFHLIKVTDYREAGVRDFEEVKAQIESNLKNKKKSQAFQDFVENLREKAEIDI 341
>gi|21672423|ref|NP_660490.1| survival protein SurA precursor [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25091307|sp|Q8KA01|SURA_BUCAP RecName: Full=Chaperone surA homolog; Flags: Precursor
gi|21623033|gb|AAM67701.1| survival protein SurA precursor [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 432
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/154 (9%), Positives = 41/154 (26%), Gaps = 6/154 (3%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K++ ++ FL + + + V Q + S +
Sbjct: 1 MKVYFFLILYVFLSFFSITYSKELEIDKIIAIVNNQIILNSDVNQVLFSLKEEDQRVKIP 60
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ L KI+ L++ + + + + +V +++ L +
Sbjct: 61 ------LKINFLRNKIIKKLITETLILEEAKKFNIVVTDDQVNNVLSKYALKKNITIEEL 114
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ + +Y + L +
Sbjct: 115 KRNILMNNTNTSFSYNDYFNKIKNSLKVKIIQDY 148
>gi|205375588|ref|ZP_03228375.1| protein secretion (post-translocation chaperonin) [Bacillus
coahuilensis m4-4]
Length = 301
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/156 (10%), Positives = 45/156 (28%), Gaps = 5/156 (3%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++ + + D ++ K E AN++ + + G +
Sbjct: 128 IEVTDEEIQEYFDANKASFDQQEQVKASHILVEDEETANEVKQKLDEGGDFAELAAEYST 187
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + + + F V + P++ Y + KV +
Sbjct: 188 DTSNASQGGDLGFFGKGQMVPEFEEAAFGAEVGSI-TGPVQTDFGYHIIKVEEKQEAKEA 246
Query: 586 E----KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
K++ + Q + I LK ++ +
Sbjct: 247 TLEDVKEEVRETIKQQKQQQEYPVWIEELKGKHDIK 282
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 55/194 (28%), Gaps = 26/194 (13%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L V+ + +I + G TV V +K+ + ++
Sbjct: 7 ILAVIALAVVIA-----MSFSKGGETVAEVDGEKISKEELYDRLVEQDQG---------- 51
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
L+ ++S + + +D G+EA + E+ +G + F++ +
Sbjct: 52 -----------ATLNAMISEVLIMKEAKDQGVEASDEEINEELETLYGMYGGEEAFTNQI 100
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
S ++ + + + + Y+ L + + + S +
Sbjct: 101 EASGMSLDEVKDDITLFIYSNKLMEDRIEVTDEEIQEYFDANKASFDQQEQVKASHILVE 160
Query: 197 LNNRHVPAIADPSN 210
Sbjct: 161 DEETANEVKQKLDE 174
>gi|255036261|ref|YP_003086882.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
fermentans DSM 18053]
gi|254949017|gb|ACT93717.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
fermentans DSM 18053]
Length = 457
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 43/502 (8%), Positives = 128/502 (25%), Gaps = 76/502 (15%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
W+ + + + VS + V + S + + Q
Sbjct: 2 KVNKWIGAHLAAIFMLLCSVVSFGQGQQGVSLDKIIARVDNHYILSSELEDMYNQYKA-- 59
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
R ++L++L+ L E + + V GE+ +
Sbjct: 60 -----------EGRGAPEKCQLLESLIINKMLLAKAEIDSVTVEDKEVDGELNAKMNYMV 108
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
+ ++ + + +
Sbjct: 109 QRFGSEKNIVEAY----------------------------------GKSIENLKGELRQ 134
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
+ + + R + + A + ++F + +
Sbjct: 135 QVKEQKIVEKMQRTISGNVKITPADVRKFFNSIPKDS---------------------LP 173
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
E++ + K + + Q + ++ A++ + + + + G +
Sbjct: 174 YIPSEVEVGHIVKKGTVTREQKEKLRQQLQELKQRAEKGEDFAMLAQIYSE---DLGSAK 230
Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK-PSFTVSFQE 366
LG + + ++ K G+ + VI FG+ + + + +
Sbjct: 231 VGGDLGFAKRGQMVPEFEGAAL--GLKPGEMSNVIESQFGFHLIKLIETRGAEYHARHIL 288
Query: 367 VKKDIANQMRITKASEKVKEDYK--RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
++ D +T A+ + + + ++D +E S L G+
Sbjct: 289 LRPDYNKGTDMTDATRALDSLRALIKTDSLKFAKAALDNSDDKETAESGGLIQDRSTGQA 348
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
+ + P + + D + + + + + K L +
Sbjct: 349 RLTLDASMDPALYFAIDTMKVGDLSMPVSYRLEDGSSAMRILWYKSKSEPHTANLHDDYE 408
Query: 485 DVKKDWKTVKTAEEVSSKANQL 506
+ + + K + +
Sbjct: 409 KLAQIVLSNKRNNALEEWFKKA 430
>gi|82775458|ref|YP_401805.1| peptidyl-prolyl cis-trans isomerase SurA [Shigella dysenteriae
Sd197]
gi|309787287|ref|ZP_07681899.1| chaperone surA [Shigella dysenteriae 1617]
gi|121956480|sp|Q32K41|SURA_SHIDS RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|81239606|gb|ABB60316.1| survival protein [Shigella dysenteriae Sd197]
gi|308924865|gb|EFP70360.1| chaperone surA [Shigella dysenteriae 1617]
Length = 428
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + + SRLA +G+N Y + K + ++V V
Sbjct: 97 DQAIANI----AKQNNMTLNQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 151
Score = 44.1 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 32/373 (8%), Positives = 92/373 (24%), Gaps = 10/373 (2%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
A+ + + + +E+L+ +K + + A ++++L
Sbjct: 54 AQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLNQ 113
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HVSNIKPSFTVSFQEVKKD 370
D ++ + +K + + + + +
Sbjct: 114 MRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTE 173
Query: 371 IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ + E D E A + + D +
Sbjct: 174 LNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGW 233
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKD 489
I + + + G ++ +++ + EV +
Sbjct: 234 GRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLK 293
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
+ T E+ K Q+ + F K + NQ + F
Sbjct: 294 PSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAF 353
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDS 605
+ + P+ + + + ++ + +KD+ L + S
Sbjct: 354 RDALTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAAS 412
Query: 606 VIAYLKSQYSVTV 618
+ ++ V +
Sbjct: 413 WMQEQRASAYVKI 425
>gi|319408317|emb|CBI81970.1| conserved exported hypothetical protein [Bartonella schoenbuchensis
R1]
Length = 308
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/182 (8%), Positives = 41/182 (22%), Gaps = 17/182 (9%)
Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD 86
G + ++ ++V + Q L
Sbjct: 7 FTGAFFISSVFAQTTVAITVNGNPITNYDIQRRIAFLKLQQKQ-------------GDLS 53
Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
+ + L+ + I+ + ++ + A + N + D L + +
Sbjct: 54 AQARNELIDEMLKNIEIQRLNIDVSDNEINSAFAN----FAEQNNMTVDQLSEMLNQTEV 109
Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
E+ + + + + +V + A R
Sbjct: 110 TEEHFKAYISGQMGWGRLVNARYQSEDGYLSEQEAAHRILKNGGIKPSTNEYTLQQIIFV 169
Query: 207 DP 208
P
Sbjct: 170 IP 171
>gi|288818385|ref|YP_003432733.1| hypothetical protein HTH_1074 [Hydrogenobacter thermophilus TK-6]
gi|288787785|dbj|BAI69532.1| hypothetical protein HTH_1074 [Hydrogenobacter thermophilus TK-6]
gi|308751978|gb|ADO45461.1| conserved hypothetical protein [Hydrogenobacter thermophilus TK-6]
Length = 276
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 11/106 (10%), Positives = 31/106 (29%), Gaps = 15/106 (14%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
V++ + + + S ++ V V ++ + I+++ I
Sbjct: 3 LFVLITLLMVGF---------SYANVVAKVNQRSITREEVISAFNAYWRGIIHLPIAQAT 53
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+ L V + Q + +G+ I ++
Sbjct: 54 KRDMQEF------LVEYVRSLIIQQEAKKMGINVKESEFKEYITKN 93
>gi|241663100|ref|YP_002981460.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
12D]
gi|240865127|gb|ACS62788.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
12D]
Length = 265
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/202 (9%), Positives = 61/202 (30%), Gaps = 21/202 (10%)
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+L+ + K L +D + + V + + ++ K + +K
Sbjct: 65 DRELIEQDAAKRGLLERDDVQEQLASARLNVLVAAEFEDYVKNSPATEDELHKQYDKIKA 124
Query: 496 A-------------EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NEN 541
+ + A ++ + K G F DI K + +D
Sbjct: 125 QFGNGKEYHAHHILVDKEADAKAIIAKL-KAGAKFEDIAKAQSKDKGSGANGGDLDWANP 183
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT------ 595
+ + + + + P++ + V ++ +++ + + L
Sbjct: 184 GTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDDTRDAKIPSYEDVKPQLLEMMMGD 243
Query: 596 QMMNKDLLDSVIAYLKSQYSVT 617
Q + +++ L+ + +
Sbjct: 244 QNWQRSKFQAMLKELREKAKIQ 265
Score = 42.5 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%)
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ K + DEL +Y+K K ++ + + ++ + +A LK G KF
Sbjct: 101 FEDYVKNSPATEDELHKQYDKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGAKFED 160
Query: 299 LAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A+ Q K + G P + ++ L K + FG+ + + +
Sbjct: 161 IAKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDD 220
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEK 383
+ + S+++VK + M + ++
Sbjct: 221 TRDAKIPSYEDVKPQLLEMMMGDQNWQR 248
>gi|53804280|ref|YP_114087.1| peptidyl-prolyl cis-trans isomerase family protein [Methylococcus
capsulatus str. Bath]
gi|53758041|gb|AAU92332.1| peptidyl-prolyl cis-trans isomerase family protein [Methylococcus
capsulatus str. Bath]
Length = 325
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 2/132 (1%)
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFG 545
+ +++ + A ++ + K G F D+ K + N+ + +
Sbjct: 148 RAEYRARHILVDKEDVAKDIIAKLGK-GAKFEDLAKKFSKDPGSNNEGGELGWFSPQQMV 206
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605
V + P++ + V + S+ D + M+ L
Sbjct: 207 QPFSEAVEKLKNGEITQVPVQTQFGWHVIQREESRESAPPAFDAVKEQIKSMLQTQKLHQ 266
Query: 606 VIAYLKSQYSVT 617
I L ++ V
Sbjct: 267 YIDDLMAKAKVE 278
>gi|154247041|ref|YP_001417999.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter
autotrophicus Py2]
gi|154161126|gb|ABS68342.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Xanthobacter
autotrophicus Py2]
Length = 338
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 2/104 (1%)
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
G++F + K+ + + + F V P+++ + V
Sbjct: 210 GEDFAKLAKDYSKD-SAEDGGDLGYFTKDQMVPEFAEAAFKLDKGQV-SDPVKSQFGWHV 267
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
KV + + PV D+ + Q + + ++ L++ +
Sbjct: 268 IKVEDKRQKPVPTYDQVSDQVEQYLVRKAQADLVTKLRTDAKIE 311
Score = 37.5 bits (84), Expect = 6.4, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V +V + S + + IG + + + ++ +L L L
Sbjct: 75 DTVVATVNGTPIRQSDVTIALED--------IGAGLPP-QLQGAQREEYVLSFLTDMTLL 125
Query: 100 DQFIEDIGLEADHG 113
+ E L+
Sbjct: 126 AKAAEAQKLDQSPD 139
>gi|268316286|ref|YP_003290005.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
DSM 4252]
gi|262333820|gb|ACY47617.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
DSM 4252]
Length = 350
Score = 51.8 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/162 (10%), Positives = 52/162 (32%), Gaps = 1/162 (0%)
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++++ + ++ + + Q VL+ + G +F ++ +
Sbjct: 189 EVEQFRQQQAEEVHVQHILFRLAPNASEEEAAAVKARAQAVLDSIRSGADFAEMARRHSE 248
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ F+ V P+ Y + ++ + G
Sbjct: 249 DGSAQEGGDLGFIRRGETVEPFEEAAFALRDSGDVTTEPVRTRFGYHLIRLLERRQGTPM 308
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ + L Q ++ + ++ L ++ +V ++ L+Q L
Sbjct: 309 DAAEAREQLLQERKQEAVQHLLEELLAKATVRINPALVQAQL 350
>gi|283783842|ref|YP_003363707.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase)
[Citrobacter rodentium ICC168]
gi|282947296|emb|CBG86841.1| chaperone precursor (peptidyl-prolyl cis-trans isomerase)
[Citrobacter rodentium ICC168]
Length = 428
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
Q + + + + G + + L +IL+ L+ + Q + +G++ ++ I
Sbjct: 45 LMQSVKLNASQAGQQLPDD----ATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAI 100
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
A + N + D SRLA +G+N Y + K + ++V V
Sbjct: 101 ANI----ARQNNMTLDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVR 147
Score = 44.1 bits (101), Expect = 0.076, Method: Composition-based stats.
Identities = 31/370 (8%), Positives = 90/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q+V ++ + + +A + +L D
Sbjct: 58 QQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDEQLDQAIANIARQNNMTL-DQMRS 116
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + + I + ++ + + ++
Sbjct: 117 RLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRVTILPQEVEALAQQVGNQNDASTELNL 176
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ E D E A S + D I
Sbjct: 177 SHILIPLPENPTSDQVSEAEAQARSIVDQARSGSDFGKLAIAYSADQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ + + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDVVGPIRSGVGFHILKVNDMRGQNQSISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ T ++ K Q+ + F K + NQ + F
Sbjct: 297 IMTDQQARQKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWAAADIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ + +KD+ L + + +
Sbjct: 357 LTRMNKGQI-SAPVHSSFGWHLIELLDTRSVDKTDAAQKDRAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|296101217|ref|YP_003611363.1| peptidyl-prolyl cis-trans isomerase SurA [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295055676|gb|ADF60414.1| peptidyl-prolyl cis-trans isomerase SurA [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 428
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIVLQMGQKMGVKITDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
N + D SRLA +GI+ Y + K + ++V V
Sbjct: 107 NNMTLDQMRSRLAYDGISYSTYRNQIRKEMLISEVRNNEVR 147
Score = 41.8 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 29/376 (7%), Positives = 91/376 (24%), Gaps = 7/376 (1%)
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
S Q + ++ E ++Q+V ++ + + +A++ +L
Sbjct: 52 NSGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKITDEQLDQAIANIAKQNNMTL 111
Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
+ + + + V +
Sbjct: 112 DQMRSRLAYDGISYSTYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDAS 171
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG 427
+ + + I + E ++I D
Sbjct: 172 TELNLSHILIPLPENPTSDQAAEAESQARAIVEQARNGSDFGKLAITYSA-DQQALKGGQ 230
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-V 486
I + + + G ++ +++ + EV +
Sbjct: 231 MGWGRIQELPSIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHI 290
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFG 545
+ T ++ +K Q+ + +F + K + NQ + +
Sbjct: 291 LLKPSPIMTDDQARAKLQQIAADIKSGKTSFANAAKEFSQDPGSANQGGDLGWAAADIYD 350
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDL 602
+ + P+ + + + ++ + +KD+ L +
Sbjct: 351 PAFRDALMKLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLFNRKFSEE 409
Query: 603 LDSVIAYLKSQYSVTV 618
+ + ++ V V
Sbjct: 410 AATWMQEQRASAYVKV 425
>gi|268682955|ref|ZP_06149817.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
gi|268623239|gb|EEZ55639.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID332]
Length = 357
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 37/131 (28%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 80 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 132
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P ++ + +A + + +
Sbjct: 133 IVQAGKRRNIQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSE 192
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 193 AEIDAFLEQAQ 203
>gi|126462315|ref|YP_001043429.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
sphaeroides ATCC 17029]
gi|126103979|gb|ABN76657.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
sphaeroides ATCC 17029]
Length = 435
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 18/161 (11%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+T+V+ +V+ AL + + V + + F
Sbjct: 32 KTFVSHCLALVVAAGLTFTSAPGALAQNLFAPRL-VVNDRVITNYEFEQRV-----RFLT 85
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+G + E K+ +D L+ E GL+A ++ +
Sbjct: 86 ILGATGDVE--------KQAMDALIEDKIRFDAAEQAGLKATEEQIKEGMEE----FAGR 133
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
S + F + L + G+ + + D L +++ G
Sbjct: 134 ANLSAEQFAAELGKAGVAVETFRDFVHAGLIWRELMRAKFG 174
Score = 41.8 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 1/89 (1%)
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKD 588
T Q+ R D ++ V + G V+ V ++
Sbjct: 345 TEQQLRRTTLPLAQVPQDVALELAGLDAGEVSSSALPGGTRRVLMLCARRPVSAEPIDRG 404
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L D+ +A L++ +
Sbjct: 405 RLAQALANQSISASADAYMADLRANAIIR 433
>gi|84516316|ref|ZP_01003676.1| PPIC-type PPIASE domain [Loktanella vestfoldensis SKA53]
gi|84510012|gb|EAQ06469.1| PPIC-type PPIASE domain [Loktanella vestfoldensis SKA53]
Length = 415
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/168 (13%), Positives = 53/168 (31%), Gaps = 26/168 (15%)
Query: 3 EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
+ +R S TW A + L + GL + + + ++V + +
Sbjct: 9 DRMRAFS-TWTAVLALAL--------GLGQPATAQNQFAPAITVNERVITQYELTQRI-- 57
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+ + G + +A D L++ Q I+ +GL+ + +
Sbjct: 58 ---RLLEVFGTRGDIAQAAR--------DALIADRLKQQEIDRVGLQVPPEAINAALDE- 105
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
F + LA+ G++ D + ++ + V
Sbjct: 106 ---FAGRADMDLAQFNAMLAQNGVDAVTLRDFVSIGVTWREYVRARFN 150
>gi|268602234|ref|ZP_06136401.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
gi|268586365|gb|EEZ51041.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID18]
Length = 357
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 37/131 (28%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 80 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 132
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P ++ + +A + + +
Sbjct: 133 IVQAGKRRNIQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSE 192
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 193 AEIDAFLEQAQ 203
>gi|186474397|ref|YP_001863368.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phymatum STM815]
gi|184198356|gb|ACC76318.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phymatum STM815]
Length = 284
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/202 (12%), Positives = 59/202 (29%), Gaps = 20/202 (9%)
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL---TDVKKDWKT 492
Q + + P + A + + +K++I +V ++
Sbjct: 82 FRQNAEKAGYGNKPEVQQVINATKVNAESQLYLKDNIHPDAVTDAQVKSRYDEIVASLGK 141
Query: 493 VKTAEEVSSKANQLVLEY----SKEGKNFRDIGKNLGASLLTTNQ-----INRMDNEN-- 541
+ + A+ + K GK+F + + + N ++
Sbjct: 142 DDYRPRIIAVADAMTAATVLGGLKAGKSFDVLARQYSITPDKANGGELPWVSFKAPAAEG 201
Query: 542 --KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
+ PV V P+ G + V+ K+ + V + D+ + Q +
Sbjct: 202 KTSGLPLPVAQALTQLPVGGVTPEPVIVGNARVIVKLDAKRPTQVPKFDQVKDTIRQQLQ 261
Query: 600 KDLLD----SVIAYLKSQYSVT 617
L+ A L ++
Sbjct: 262 ALALEKASAQFTAGLLKNATIQ 283
Score = 43.7 bits (100), Expect = 0.091, Method: Composition-based stats.
Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 15/82 (18%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
TV + +P + + + + + L + + L++ Q
Sbjct: 39 TVAIINGVSIPQAQLDAAVQATR--------------QPDTPQLRQALKAQLITRELFRQ 84
Query: 102 FIEDIGLEADHGRVWGEIARSP 123
E G + V I +
Sbjct: 85 NAEKAGYG-NKPEVQQVINATK 105
>gi|42521666|ref|NP_967046.1| survival protein SurA precursor [Bdellovibrio bacteriovorus HD100]
gi|39574196|emb|CAE77700.1| survival protein SurA precursor [Bdellovibrio bacteriovorus HD100]
Length = 307
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 4/132 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
TV V + V S F + K+ + + +G K LD L++ L
Sbjct: 13 EKTVAIVNSELVLESDFKDLVKRIPKQGMVDESLLFDKPATSLIGNRKAQLDYLINEKIL 72
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
I+ + L + RV E+ + N+ S + ++G++ +Y +
Sbjct: 73 QSEIKRLNLAVTNDRVESELKEM----ARKNQVSEAELAKVIQQQGVSMDDYRRFLKDSI 128
Query: 160 SRTDVVGMFVGG 171
+ ++ +
Sbjct: 129 EKRSLMDAEIIS 140
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 35/309 (11%), Positives = 99/309 (32%), Gaps = 12/309 (3%)
Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
S I + ++A L + DF ++ + S + S +K + +
Sbjct: 7 SHAEIVEKTVAIVNSELVLESDFKDLVKRIPKQGMVDESLLFDKPATSLIGNRKAQLDYL 66
Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
K + + + + + E++R+ ++ +L V +
Sbjct: 67 INEKILQSEIKRLNLAVTNDRVESELKEMARKNQVSEAELAKVIQQQGVSMDDYRRFLKD 126
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ + + + Y+ ++ P ++E
Sbjct: 127 SIEK-RSLMDAEIISKLRISDEDALNEYL-----KTNPNNRPSIDEFSVSHIFFNPKKGG 180
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
AE +A ++ + + G+NF ++ + + ++ F + + S
Sbjct: 181 AEASIKRAETVLGKL-RSGENFENLAQQFSEDPNFSTGGALGTFKSGEFLPEIEEAISSL 239
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQ----EKDKFISYLTQMMNKDLLDSVIAYLK 611
V +++ + + + K+T K+ KDK + L + K L + + +
Sbjct: 240 KVNETTPI-VKSRMGFHIVKLTGKKLTTDPKFERAKDKIKAQLLENSFKRQLKNWLQTKR 298
Query: 612 SQYSVTVHD 620
+ + +++
Sbjct: 299 DESFIRINE 307
>gi|323529999|ref|YP_004232151.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1001]
gi|323387001|gb|ADX59091.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1001]
Length = 308
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/173 (12%), Positives = 48/173 (27%), Gaps = 20/173 (11%)
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWK-----TVKTAEEVSSKAN--QLVLEYSKEGKNF 517
+++ + +V K + A+ Q VL K+G +F
Sbjct: 134 AAYLRDQVKPAPVTDADVKAKYDAIVATLGEFEYKPSAIAVKDADTAQTVLTQLKKGTDF 193
Query: 518 RDIGKNLGASLLTTNQ-----INRMDNENKFF----GYDGISQVFSGPVEMVKCFPIENG 568
+ K I+ + P V P++ G
Sbjct: 194 AQLAKQYSQGPGAAQGGALNWISFRTPIQPGNTQNWPQPLAEALVKLPQGGVSSAPVQVG 253
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVT 617
++ + +V + + + D+ L + + + L V+ L +
Sbjct: 254 DAFWILRVDEKRATQIPQYDQIKDTLRKQLEQVALQKATAQVVVDLMKNAKIQ 306
Score = 41.4 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 15/81 (18%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V V + + ++ + S + L I + L++
Sbjct: 61 NAVARVNGVVITQAQLDDAVR--------------ASNVPDTPALRASIKNQLIARELFR 106
Query: 101 QFIEDIGLEADHGRVWGEIAR 121
Q E E +V + +
Sbjct: 107 QAAEKQHYE-SRPQVVAAVEQ 126
>gi|209545159|ref|YP_002277388.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532836|gb|ACI52773.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 452
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 12/187 (6%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
SD + S + + + + N + + + L +IL
Sbjct: 46 SDQSDATSQDAIIAIIDGTLLTRRDVDNRGRLFA------LSAGLTLSDDVMARLRPQIL 99
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
L+ + + ++ IA +G + RLA++GI+
Sbjct: 100 RQLIDERLRQNEMLSRHINVSPDQIAASIADIERRNG----MPKNALRDRLAQDGISLTT 155
Query: 151 YIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
ID L + V+ +G G + + + + E+ Y++
Sbjct: 156 MIDQIRVQLGWSQVLREEMGTRGRITAAEISQREEALRHEDGKPQYLISEIFIPVDDPRH 215
Query: 209 SNAVLTQ 215
S L
Sbjct: 216 SEDELKF 222
>gi|332295221|ref|YP_004437144.1| hypothetical protein Thena_0367 [Thermodesulfobium narugense DSM
14796]
gi|332178324|gb|AEE14013.1| hypothetical protein Thena_0367 [Thermodesulfobium narugense DSM
14796]
Length = 178
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/136 (11%), Positives = 39/136 (28%), Gaps = 12/136 (8%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ + F++ + S + + +V + S + +
Sbjct: 4 IVLLCFVLVFVVMVKPSFADDKVLATVNGTSITQSQVDAIYNNL-----------PPNVD 52
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
+ L K+IL+ L+ L + GLE + +V I + +
Sbjct: 53 KTNPDLKKEILNRLIENLVLLDEAKKEGLE-NDPKVIEAINNAKNEILINYLLQKHFAGQ 111
Query: 140 RLAREGINEKEYIDHY 155
+ + +
Sbjct: 112 NFDVTDADVTNFYNQN 127
>gi|77463460|ref|YP_352964.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
sphaeroides 2.4.1]
gi|77387878|gb|ABA79063.1| Probable PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
sphaeroides 2.4.1]
Length = 435
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 18/161 (11%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+T+V+ +V+ AL + + V + + F
Sbjct: 32 KTFVSHCLALVVAAGLTFTSAPGALAQNLFAPRL-VVNDRVITNYEFEQRV-----RFLT 85
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+G + E K+ +D L+ E GL+A ++ +
Sbjct: 86 ILGATGDVE--------KQAMDALIEDKIRFDAAEQAGLKATEEQIKEGMEE----FAGR 133
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
S + F + L + G+ + + D L +++ G
Sbjct: 134 ANLSAEQFAAELGKAGVAVETFRDFVHAGLIWRELMRAKFG 174
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKD 588
T Q+ R D ++ V + V+ V ++
Sbjct: 345 TEQQLRRTTLPLAQVPQDVALELAGLDAGEVSSSALPGDTRRVLMLCARRPVSAEPIDRG 404
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L D+ +A L++ +
Sbjct: 405 RLAQALANQSISASADAYMADLRANAIIR 433
>gi|162149098|ref|YP_001603559.1| peptidyl-prolyl cis-trans isomerase SurA [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787675|emb|CAP57271.1| Peptidyl-prolyl cis-trans isomerase SurA [Gluconacetobacter
diazotrophicus PAl 5]
Length = 459
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 12/187 (6%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
SD + S + + + + N + + + L +IL
Sbjct: 53 SDQSDATSQDAIIAIIDGTLLTRRDVDNRGRLFA------LSAGLTLSDDVMARLRPQIL 106
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
L+ + + ++ IA +G + RLA++GI+
Sbjct: 107 RQLIDERLRQNEMLSRHINVSPDQIAASIADIERRNG----MPKNALRDRLAQDGISLTT 162
Query: 151 YIDHYTKMLSRTDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
ID L + V+ +G G + + + + E+ Y++
Sbjct: 163 MIDQIRVQLGWSQVLREEMGTRGRITAAEISQREEALRHEDGKPQYLISEIFIPVDDPRH 222
Query: 209 SNAVLTQ 215
S L
Sbjct: 223 SEDELKF 229
>gi|254494588|ref|ZP_05107759.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
gi|268599899|ref|ZP_06134066.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
gi|268604500|ref|ZP_06138667.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
gi|268685120|ref|ZP_06151982.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
SK-92-679]
gi|268687382|ref|ZP_06154244.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
SK-93-1035]
gi|226513628|gb|EEH62973.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae 1291]
gi|268584030|gb|EEZ48706.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae MS11]
gi|268588631|gb|EEZ53307.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae PID1]
gi|268625404|gb|EEZ57804.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
SK-92-679]
gi|268627666|gb|EEZ60066.1| peptidyl-prolyl cis-trans isomerase [Neisseria gonorrhoeae
SK-93-1035]
Length = 357
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 37/131 (28%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 80 SDGIAAVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 132
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P ++ + +A + + +
Sbjct: 133 IVQAGKRRNIQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSE 192
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 193 AEIDAFLEQAQ 203
>gi|320642095|gb|EFX11446.1| peptidyl-prolyl cis-trans isomerase SurA [Escherichia coli O157:H7
str. G5101]
Length = 428
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 45 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 96
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++ V
Sbjct: 97 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEARNNEVRRRIT 151
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 29/370 (7%), Positives = 90/370 (24%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q++ ++ + + +A++ +L +
Sbjct: 58 QQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + V ++ + +
Sbjct: 118 LAYDGLNYNTYRNQIRKEMIISEARNNEVRRRITILPQEVESLAQQVGNQNDASTELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I + E ++I D + I
Sbjct: 178 HILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAI-AHSADQQALNGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ +++ + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ T E+ K Q+ + F K + NQ + F
Sbjct: 297 IMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ + +KD+ L + S +
Sbjct: 357 LTRLNKGQM-SAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|291616238|ref|YP_003518980.1| SurA [Pantoea ananatis LMG 20103]
gi|291151268|gb|ADD75852.1| SurA [Pantoea ananatis LMG 20103]
gi|327392689|dbj|BAK10111.1| chaperone SurA precursor [Pantoea ananatis AJ13355]
Length = 431
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 9/141 (6%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
S + +++ G + + L +IL+ + A + Q + GL+
Sbjct: 39 ESDVDSMMSTVKSQ-AKQAGQQLPDD----KTLRHQILEREIMDAIILQLGDKAGLQITD 93
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
++ I N+ S D SRLA +G+N Y K + ++V V
Sbjct: 94 QQLDQAIQNIAA----QNRMSVDQLRSRLAYDGMNYNTYRAQIRKEMLISEVRNNEVRRR 149
Query: 173 RPSNLLLDQAKRFYFENRSVD 193
++
Sbjct: 150 VTILPQEVDTLAQQVGAQNTQ 170
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 22/211 (10%), Positives = 57/211 (27%), Gaps = 6/211 (2%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D A I L + + G ++ +++
Sbjct: 222 DSQALKGGNMGWAKIEELPTLFAQALTTAKKGDIVGPIRSGVGFHILKVNDLRGESKNVS 281
Query: 479 LEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ EV + + T ++ +K Q+ + F K + NQ +
Sbjct: 282 VTEVHARHILLKPSPIMTDDQARAKLEQIAADIRSGKTTFAAAAKQFSDDPGSANQGGDL 341
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISY 593
+ F + P+ + + + ++ + +K++
Sbjct: 342 GWTSPEVFDPAFRDALLRLKKGETSQ-PVHSSFGWHLIQLLDTRQVDKTDAAQKERAYRM 400
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
L + + + ++ V + DN Q
Sbjct: 401 LFNRKFAEEAQTWMQEQRAGAYVKILDNNAQ 431
>gi|261400512|ref|ZP_05986637.1| SurA/PPIASE domain protein [Neisseria lactamica ATCC 23970]
gi|269209772|gb|EEZ76227.1| SurA/PPIASE domain protein [Neisseria lactamica ATCC 23970]
Length = 358
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/174 (8%), Positives = 43/174 (24%), Gaps = 8/174 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L ++L LV+ +
Sbjct: 81 SDGIAAVADNEVITRRRLAQAVADAKANLPKDV-------QIGDEELTGQVLMQLVNQSL 133
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + A++P + ++ S +A + + +
Sbjct: 134 IVQAGKRRNIQASEAEIDAAAAQNPQLKHLSAEQRRELADSIIAEKVRQQAVMQNSRVSE 193
Query: 159 LSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ G+ + R D I +
Sbjct: 194 AEVDRFIEQAQKQGITLPEGEPLRQYRAQHILIKADGENAAVGAESTIRKIYDQ 247
>gi|146310266|ref|YP_001175340.1| peptidyl-prolyl cis-trans isomerase SurA [Enterobacter sp. 638]
gi|145317142|gb|ABP59289.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterobacter sp.
638]
Length = 428
Score = 51.4 bits (120), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIVLQMGQKMGVKVTDEQLDQAIANI----SKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
N + D SRLA +GI+ Y + K + ++V V
Sbjct: 107 NNMTLDQMRSRLAYDGISYATYRNQIRKEMLISEVRNNEVR 147
Score = 41.4 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 18/205 (8%), Positives = 54/205 (26%), Gaps = 6/205 (2%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D I + + + G ++ +++
Sbjct: 222 DQQALKGGQMGWGRIQELPSIFGQALSTAKKGDIVGPIRSGVGFHILKVNDRRGQSQNIS 281
Query: 479 LEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ EV + + T ++ K Q+ + +F + K + NQ +
Sbjct: 282 VTEVHARHILLKPSPIMTDDQARVKMEQIAADIKSGKTSFANAAKEFSQDPGSANQGGDL 341
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISY 593
+ + + P+ + + + ++ + +KD+
Sbjct: 342 GWAAADIYDPAFRDALMKLNKGQM-SAPVHSTFGWHLIELLDTRNVDKTDAAQKDRAYRM 400
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTV 618
L + + + ++ V V
Sbjct: 401 LFNRKFSEEAATWMQEQRASAYVKV 425
>gi|163735798|ref|ZP_02143227.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter
litoralis Och 149]
gi|161390884|gb|EDQ15224.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter
litoralis Och 149]
Length = 415
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 22/155 (14%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+ +V F + + +LFS V+ V + F +Q+ ++ G
Sbjct: 19 VLMVCATCSFAVPLGAQSLFS-----PVIEVNDGVIT--EFEIEQRQQFLILLNAPGSS- 70
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ +++ L++ Q + + GLE + + D
Sbjct: 71 ----------RQAVIEELINERLRAQAVANAGLELSDAAMQDGMIE----FAGRVNLGVD 116
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
F + L GI + D +S D + G
Sbjct: 117 EFKTVLEENGIAATTFEDFVRVGVSWRDFIAARFG 151
>gi|146296230|ref|YP_001180001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409806|gb|ABP66810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 335
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 45/153 (29%), Gaps = 4/153 (2%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMIS--QKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ V V +K+ F ++K ++ + + + + +LD L+
Sbjct: 35 NRAVAIVNGEKITKKEFSINYKSQIDYYGLDKAFLAQKVGSKTYEEQIKENVLDGLIVRQ 94
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
Q + + + + K++ + F L G E EY D K
Sbjct: 95 IELQQAKKRNIILTAQE--KKAIEDQINQYKNDPQNGLQFKQYLQTIGATEDEYKDQIIK 152
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+ + S ++ + +
Sbjct: 153 SQIVSKLFNELTKNQTASMFEIESYYNSHKTDY 185
>gi|294101095|ref|YP_003552953.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminobacterium
colombiense DSM 12261]
gi|293616075|gb|ADE56229.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Aminobacterium
colombiense DSM 12261]
Length = 282
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/252 (7%), Positives = 69/252 (27%), Gaps = 18/252 (7%)
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+++ + +K + + I + + + + + +
Sbjct: 44 EIKGQDVEDVIKSLDPQQRMYYENEQGRKAILEELINLEVFVRWAQENDVEKDPIFIERL 103
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
++ + R + Y + + + +
Sbjct: 104 ENIKREILRQVALEKMFGNVSVSEKEARDYYTAHVTDF-------------MIPSQIRAS 150
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
E +A ++ E E F D + + + + ++ +
Sbjct: 151 HILVENEEEAKRIREEIKTEKITFEDAAQKYSSCPSKAQKGDLGYFQSDQVVPEFSQAAG 210
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAY 609
+ + P+++ + + ++ + K G +Q ++ + + +
Sbjct: 211 ALKKGEI-SAPVKSQYGWHIIRLEDKKPGSLQPFEEVKGQIETNLLREKRAQIYTDETER 269
Query: 610 LKSQYSVTVHDN 621
L+ QY V V +N
Sbjct: 270 LRKQYGVKVFEN 281
Score = 38.7 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 24/241 (9%), Positives = 64/241 (26%), Gaps = 19/241 (7%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDA--LFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
+RK + +A + + + G++ A + G + VG ++ + K
Sbjct: 1 MRKNVKLLIAMAIIATVVLS----GVAGAKEVEKSDGDKVLAQVGDVEIKGQDVEDVIKS 56
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH---GRVWGEI 119
+ K IL+ L++ ++ ++ +E D R+
Sbjct: 57 LDPQQRMYY---------ENEQGRKAILEELINLEVFVRWAQENDVEKDPIFIERLENIK 107
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS-RTDVVGMFVGGMRPSNLL 178
+ F + + AR+ + +V R +
Sbjct: 108 REILRQVALEKMFGNVSVSEKEARDYYTAHVTDFMIPSQIRASHILVENEEEAKRIREEI 167
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
+ F + + S+ V+ ++ + + +
Sbjct: 168 KTEKITFEDAAQKYSSCPSKAQKGDLGYFQSDQVVPEFSQAAGALKKGEISAPVKSQYGW 227
Query: 239 V 239
Sbjct: 228 H 228
>gi|78224731|ref|YP_386478.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
metallireducens GS-15]
gi|78195986|gb|ABB33753.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
metallireducens GS-15]
Length = 323
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 34/125 (27%), Gaps = 20/125 (16%)
Query: 7 KASRTWVAKIFLV-VLFVPFLIWGLSDALFSVSG-------SSTVVSVGRQKVPFSSFIN 58
RT V I +L VPF G + + + V + F
Sbjct: 8 NVKRTAVLTILSATLLAVPF--TGCKGKTETGTATAPAKKAGEVIAEVNGDTITTGDFQK 65
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ A + K++LD +V + Q GL+ V +
Sbjct: 66 ELENL---------PPYLKPMADTAEGKKELLDTMVVRELILQQARKDGLDKSPD-VAAK 115
Query: 119 IARSP 123
+
Sbjct: 116 LEELK 120
>gi|307718672|ref|YP_003874204.1| basic membrane protein [Spirochaeta thermophila DSM 6192]
gi|306532397|gb|ADN01931.1| basic membrane protein [Spirochaeta thermophila DSM 6192]
Length = 346
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/212 (12%), Positives = 65/212 (30%), Gaps = 18/212 (8%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF--INSWKQELGMISQKIG 72
KI L V+ + F + V V K+ +K ++ ++ +++G
Sbjct: 5 KIVLGVVVMGLF------PAFGQIIDAPVARV---KLTKLEVITQRQFKADVELLEKQLG 55
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
++ E K++LD + + Q E L + IA+ +
Sbjct: 56 RELSLEE------RKQLLDARIGEILIYQAAEREYLSVTQEELSQAIAQYKQSVAPNVS- 108
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ ++ G+ +++ + K L + G + + + N ++
Sbjct: 109 DQEFQRLIESQGGMTWEQFQEQMKKRLIAEKYLYQKKGQEIQNVPAPSEEEIRRVYNENI 168
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ L+ +K N
Sbjct: 169 SNFTAPEMVRYSHIFIDTRGLSDEEKKKAYNR 200
>gi|300871743|ref|YP_003786616.1| hypothetical protein BP951000_2140 [Brachyspira pilosicoli 95/1000]
gi|300689444|gb|ADK32115.1| hypothetical protein BP951000_2140 [Brachyspira pilosicoli 95/1000]
Length = 489
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/270 (11%), Positives = 88/270 (32%), Gaps = 14/270 (5%)
Query: 8 ASRTWVAKIF----LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV---PFSSFINSW 60
++ V K + + + +++ L + T+ SV + S + ++
Sbjct: 10 KKKSPVVKTLQWLGVSAVSILLIVYFLVIDTRGSQKTPTIGSVNGTPIYYTSTSPYGKAF 69
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+E+ Q+ G +N++ ++ V+ LD + + +
Sbjct: 70 -REIENYYQQFGIPMNAD--IYANIEDLAFRRAVTTILLDDLAAK-NITVSDKIILQYMQ 125
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEK-EYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
F + ++ + + + +EK + + + ++ ++L L
Sbjct: 126 S--QFIDSNGNYNQMAYDAFIKNTPQSEKIRIEKDLKETVMAQTIALELFNSVKINSLEL 183
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
++ R ++ + ++ + AD + ++F K N+ + I
Sbjct: 184 ERQYIKNLTKRDIEMLYIDASEIVKNADILETDIDKYFNDNKTNFVQADISWILLANAKD 243
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
E K ++ L + K Y +
Sbjct: 244 AENVYKTLKNDITLFDKTVAEKSIYTNDYH 273
>gi|325479565|gb|EGC82661.1| putative peptidylprolyl isomerase PrsA2 [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 354
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/152 (11%), Positives = 43/152 (28%), Gaps = 17/152 (11%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
TV V +K+ + + M++ + L I+ +V
Sbjct: 48 DDKTVAIVDGEKISKDDYKSELSFYASMLASQ------------QQLKNSIVTMMVQDKL 95
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ I+ ++ D V + +S G F L + ++ + K
Sbjct: 96 IANDIKKNDIKVDDKEVEDALMQSVQNFGGQENFDK-----TLDDYNMELDKFKETLKKD 150
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
L F + ++ + + +
Sbjct: 151 LMYKKHREWFDENNKVTDDEIKKYFEDNKDEF 182
>gi|197116615|ref|YP_002137042.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
[Geobacter bemidjiensis Bem]
gi|197085975|gb|ACH37246.1| peptidylprolyl cis-trans isomerase lipoprotein, PpiC-type
[Geobacter bemidjiensis Bem]
Length = 324
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/237 (8%), Positives = 61/237 (25%), Gaps = 18/237 (7%)
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
E+ + + L G D + A + ++ + + +
Sbjct: 66 MTETPEGKKEMLDTMVVRELILQQSKKEGIDSSAEVAAKLEDLKKRVIVEAFLKKKVEES 125
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
++ D + + + + ++A + + K+
Sbjct: 126 GNISDADMKAF------------YEKNKEKFQSGAQIRASHILVKSEAEAKDIQNQL-KK 172
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
G +F ++ K + D F ++ Y +
Sbjct: 173 GASFEELAKKHSIDGAAQKGGDLGWFSKGSMIPDFEKVAFGLKEGETSGI-VKTQFGYHI 231
Query: 574 FKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
K T + KD+ + + ++ + LK + + ++ ++
Sbjct: 232 IKKTGDRPAGARSFEDVKDQIKAAMVPERQQETFKKLKDELKKNAKLNIKEDALKEL 288
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 15/111 (13%)
Query: 18 LVVLFVPFLIWGL-----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+++L + G S+A + V K+ + F Q
Sbjct: 9 VLLLALCVAATGCKQKAESEAKKGPGNGIVLAEVNGAKITDNDFYKE---------QAAL 59
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ K++LD +V + Q + G++ V ++
Sbjct: 60 PPYLKPMTETPEGKKEMLDTMVVRELILQQSKKEGID-SSAEVAAKLEDLK 109
>gi|121604733|ref|YP_982062.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
naphthalenivorans CJ2]
gi|120593702|gb|ABM37141.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polaromonas
naphthalenivorans CJ2]
Length = 263
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 2/131 (1%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGY 546
K++K E S+A ++ K GK F DI K + + +
Sbjct: 134 KEYKARHILVEKESEATAIIASLKKGGK-FEDIAKKQSKDPGSGAKGGDLDWANPSSYVP 192
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ + + P+++ Y V +V + + + ++ + Q M + L +
Sbjct: 193 EFTEALLKLNKGQMTDTPVKSQFGYHVIRVDDIRSAKLPAFEEVKPQIAQQMQQQKLAAF 252
Query: 607 IAYLKSQYSVT 617
L+ + V
Sbjct: 253 QEELRKKAKVE 263
Score = 41.8 bits (95), Expect = 0.34, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 16/98 (16%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
L L G A+ + V V + VP + L K G V
Sbjct: 7 FLLATAMASLLALGAQGAI-----AQNVAIVNGKAVPKTRLD-----ALAQQVAKAGRPV 56
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
E L +++ ++ Q E G+ A
Sbjct: 57 TPEM--EGQLREEV----IAREVFMQEAEKQGIAASDD 88
Score = 37.1 bits (83), Expect = 8.9, Method: Composition-based stats.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 4/172 (2%)
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ ++ I +KK +++ +L+AEY+K + ++ +
Sbjct: 89 FKAQMELARQTLMIRELFASYQKKNPVTDADLKAEYDKFAAA-SGGKEYKARHILVEKES 147
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDF 338
EA SLKKG KF +A++Q K + G P +++ L K
Sbjct: 148 EATAIIASLKKGGKFEDIAKKQSKDPGSGAKGGDLDWANPSSYVPEFTEALLKLNKGQMT 207
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+ FGY + V +I+ + +F+EVK IA QM+ K + +E K+
Sbjct: 208 DTPVKSQFGYHVIRVDDIRSAKLPAFEEVKPQIAQQMQQQKLAAFQEELRKK 259
>gi|119355885|ref|YP_910529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
phaeobacteroides DSM 266]
gi|119353234|gb|ABL64105.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
phaeobacteroides DSM 266]
Length = 438
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 54/514 (10%), Positives = 128/514 (24%), Gaps = 82/514 (15%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+ A +F++++ F + L + V VG + + S + +
Sbjct: 2 KKMLTAAVFVMLVAFSFTL----GNLHADVADRIVAVVGNEVILKSEIDDRALMTVMQY- 56
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
E + L +KIL ++ + + D +
Sbjct: 57 --------PETQKDTRLKEKILAGIIDQKVILVKARIDSTQVDESTLDALTNE------- 101
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
+ + + + + E
Sbjct: 102 ---------------------------RLKMLASRFASKEAMEEKFGKSMGVIRQEIRNE 134
Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
+ I + A ++ ++ +K
Sbjct: 135 LKDQQLIETLRKKQLAGITVTHEETVDFYRNHKQQLPQVS-------------------- 174
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
+ KY + + + + E + +++ G +
Sbjct: 175 -----ELVGLSQILKYPDLPQGSKDAALAQMKIVQAELKAGADFAATARKYSQDPGSAKL 229
Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
LG K + + L K G + ++ +GY I KP+ +
Sbjct: 230 GGDLGYVQKGELVRSFEDAA--FLLKDGKISDIVETRYGYHIIQRLEKKPNAVHLRHIL- 286
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
IA T V+ + + LA + +++++ + L GK
Sbjct: 287 --IAYDQSKTDEPGTVQLLSRIKSDVLAGRATFADMAKKYSDDPVSGKLGGVILSGGSGK 344
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDH-----TVALPDGSYMWVQIKESIPARDRKLEEVL 483
+ + + ++ G + + Y Q+ IP LE+
Sbjct: 345 TLLPVASLRPQMMQIVGSLRNIGDISDPQKIDFQKGNLFYGIFQLNAKIPVHQLNLEQDY 404
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+++ K E + +QL E +
Sbjct: 405 ASLEELALEAKKQERYNEWLSQLKKEVLVRISDI 438
>gi|295111179|emb|CBL27929.1| Parvulin-like peptidyl-prolyl isomerase [Synergistetes bacterium
SGP1]
Length = 303
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/163 (12%), Positives = 48/163 (29%), Gaps = 9/163 (5%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN-----QLVLEYSKEGKNFR 518
+K + + +E + + +S A V K G +F
Sbjct: 122 AVKDVKATEEEAQKFYDEHKDQFTQPERIHARHILISDDATSADTIARVQADLKAGASFD 181
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+ K L + + + + F+ P+++ + + ++
Sbjct: 182 EEAKKLSLCPSAPQGGDLGEFTKEQMVPEFSDAAFALKEPGDVSEPVKSPFGWHIIRLEG 241
Query: 579 SKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
KD+ + LT ++ + + + LK Y V
Sbjct: 242 RTPAQLIPFDDVKDQILQDLTGQQQQERIKAKVEELKKAYKVE 284
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 31/155 (20%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL----KKGKKFIQLAEE-- 302
+ +E Q Y+++K+++ PE ++ + + + + K G F + A++
Sbjct: 129 TEEEAQKFYDEHKDQFTQPERIHARHILISDDATSADTIARVQADLKAGASFDEEAKKLS 188
Query: 303 -QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
+ LG F+KE + +D+ F+L + GD + + FG+ I + P+
Sbjct: 189 LCPSAPQGGDLGEFTKEQMV-PEFSDAAFALKEPGDVSEPVKSPFGWHIIRLEGRTPAQL 247
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
+ F +VK I + + E++K + L++
Sbjct: 248 IPFDDVKDQILQDLTGQQQQERIKAKVEELKKAYK 282
>gi|167841272|ref|ZP_02467956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
thailandensis MSMB43]
Length = 296
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 11/226 (4%)
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
++ L D K + ++ V P + +
Sbjct: 71 SALAQKAVLADAKSKGWDKEAQVQSAIEQARRDIVVRSYLASMNAPPADYPSDAEIQAAY 130
Query: 469 KESIPARDRKLEEVLTDVKKDW---KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++PA + + T ++ +A L +F + K
Sbjct: 131 DRNLPAFMAPRALHVAQIYIAVPPNAEAATLDKARRQAADLASRARNG--DFAALAKANS 188
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
+ + + + Q PI + V K+ +++
Sbjct: 189 QDHASAANGGDLGFVPEPLMLPEVRQAAGALKPGQVSAPIRTPAGFHVVKLIDARAAAPR 248
Query: 585 ---QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
K++ + L + + +A L + + ++ +++ L
Sbjct: 249 PLADVKEQVRAMLRAQRTQQNAQAYLAKLTANAPI--NEEALKKAL 292
>gi|308275078|emb|CBX31677.1| hypothetical protein N47_E51890 [uncultured Desulfobacterium sp.]
Length = 316
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 50/373 (13%), Positives = 107/373 (28%), Gaps = 71/373 (19%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + I G + + +S + K +L++L+ L
Sbjct: 14 DEKAAVVNGMPVYREELDEEIIKIQKAILG-YGKPLTVSKVKS--VQKDVLESLIRQEIL 70
Query: 100 DQFIEDIGLEADHGRVWGEIAR-SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q G++ D + EI F S + + L R I+ + K
Sbjct: 71 YQESLKSGIKPDEKSIDKEIKTLIGQFK------SETDYKNALNRRNISPEMLRSRLLKN 124
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+G + S+ + ++++
Sbjct: 125 NVLQQYIGR----------------------------------LAEKTSVSDNDIIEYYQ 150
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ ++ P R+S+I +Q
Sbjct: 151 GRIELFKQPLQVRVSHIFIRTDP-------------------------KWDAPRKQEERR 185
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
++ + + K + LG + D L D++ K G+
Sbjct: 186 KAEQILKDIKQGKDFAVIAGEHSDGPTKTKGGDLGYIKMGQL-DNKLEDAV-FKLKTGEL 243
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ ++ G+ I ++ KP +S+++VK+ I + KA + + +L E +
Sbjct: 244 SNIVETDNGFHIFKATDKKPETVLSYEDVKEKIRQFLHEEKAKREADQQAGKLREKATVE 303
Query: 399 TSMDEISRREKIV 411
++E KI
Sbjct: 304 ILLNEEGSLAKIQ 316
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 5/137 (3%)
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
++ D K ++ + + +L+ K+GK+F I T + +
Sbjct: 169 IRTDPKWDAPRKQEERRKAEQILKDIKQGKDFAVIAGEHSDGPTKTKGGDLGYIKMGQLD 228
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKD 601
VF + + + +FK T+ K K+K +L + K
Sbjct: 229 NKLEDAVFKLKTGELSNIVETDN-GFHIFKATDKKPETVLSYEDVKEKIRQFLHEEKAKR 287
Query: 602 LLDSVIAYLKSQYSVTV 618
D L+ + +V +
Sbjct: 288 EADQQAGKLREKATVEI 304
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 35/126 (27%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ ++ EE + +I + + I D K G +
Sbjct: 175 WDAPRKQEERRKAEQILKDIKQGKDFAVIAGEHSDGPTKTKGGDLGYIKMGQLDNKLEDA 234
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+ + D + + + P E+V +++ K E +A
Sbjct: 235 VFKLKTGELSNIVETDNGFHIFKATDKKPETVLSYEDVKEKIRQFLHEEKAKREADQQAG 294
Query: 505 QLVLEY 510
+L +
Sbjct: 295 KLREKA 300
>gi|116624599|ref|YP_826755.1| DSBA oxidoreductase [Candidatus Solibacter usitatus Ellin6076]
gi|116227761|gb|ABJ86470.1| DSBA oxidoreductase [Candidatus Solibacter usitatus Ellin6076]
Length = 340
Score = 51.4 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/267 (9%), Positives = 57/267 (21%), Gaps = 19/267 (7%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V + S +L + Q+I L KK L+ ++ L+
Sbjct: 28 DKAAMVNGAPILASEIDAKLGNDLAQLQQQI-----------FNLRKKQLNTVIDQKLLE 76
Query: 101 QFIEDIGLEADHGRVWGEIAR--SPLFHGKDNKF---SHDVFVSRLAREGINEKEYIDHY 155
G+ V E+ +P + KF + + ++
Sbjct: 77 DESARRGVMIA-ELVQSEVTSHVTPATSAEAEKFFKENSTKLKGDFKSLEEQIRNFLTAQ 135
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ + + + L + I + S+
Sbjct: 136 RLQARQQEFLKSLRTAAKVEVFLAPPPVFRSEVSVEGAPSRGGVAAPVTIVEFSDFHCPF 195
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
+ + + E+ ++L
Sbjct: 196 CRKAQSVLDNLRAKYGEKIRFVYRDFPLEGLHPQARVAAEASRCAAEQ--GKFWEFHDRL 253
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEE 302
+ + A + K A E
Sbjct: 254 FHGDPDASQAALSRIAKESGMDLTAFE 280
>gi|295098567|emb|CBK87657.1| Parvulin-like peptidyl-prolyl isomerase [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 428
Score = 51.0 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ L+ + Q + +G+ ++ IA K N + D SR
Sbjct: 62 DDATLRHQILERLIMDQIVLQMGQKMGVTISDEQLDQAIANI----AKQNNITPDQMRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
LA +GI+ Y + K + ++V V
Sbjct: 118 LAYDGISYATYRNQIRKEMLISEVRNNEVR 147
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 28/370 (7%), Positives = 87/370 (23%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q+V ++ + + +A++ + +
Sbjct: 58 QQLPDDATLRHQILERLIMDQIVLQMGQKMGVTISDEQLDQAIANIAKQNNITPDQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + V + + +
Sbjct: 118 LAYDGISYATYRNQIRKEMLISEVRNNEVRRRVTILPQEVDALAKQVGNQNDASTELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I + E ++I D I
Sbjct: 178 HILIPLPENPTSDQAAEAESQARAIVEQARNGDDFGKLAITYSA-DQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
L + + G ++ +++ + EV +
Sbjct: 237 QELPSLFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQNISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ T ++ +K Q+ + F K + NQ + +
Sbjct: 297 IMTDDQARAKLEQIAADIKSGKTTFDKAAKEFSQDPGSANQGGDLGWAAADIYDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+ + + + ++ + +KD+ L + + +
Sbjct: 357 LMKLNKGQM-SPPVHSSFGWHLIQLMDTRNVDKTDAAQKDRAYRMLFNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V V
Sbjct: 416 EQRASAYVKV 425
>gi|218768937|ref|YP_002343449.1| putative rotamase [Neisseria meningitidis Z2491]
gi|121052945|emb|CAM09299.1| putative rotamase [Neisseria meningitidis Z2491]
Length = 347
Score = 51.0 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 35/131 (26%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 70 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 122
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++ D + +A + + +
Sbjct: 123 IVQAGKRRNIQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 182
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 183 AEIDAFLEQAQ 193
>gi|218128451|ref|ZP_03457255.1| hypothetical protein BACEGG_00019 [Bacteroides eggerthii DSM 20697]
gi|217989342|gb|EEC55655.1| hypothetical protein BACEGG_00019 [Bacteroides eggerthii DSM 20697]
Length = 557
Score = 51.0 bits (119), Expect = 5e-04, Method: Composition-based stats.
Identities = 47/438 (10%), Positives = 109/438 (24%), Gaps = 26/438 (5%)
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ E+ ++ ++ + + + + + + +
Sbjct: 121 DTAFAFREEVENYRARLVKSYLTDTIEADAAARRWYDRMKAHHRGGQVRVRHIFKYLPQN 180
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
+ D ++ L+K + D S +P + +
Sbjct: 181 VSGDALRDAVARMDSIYEYLRKNPGDNAFDACVERFSDDKRSLWVSWLQMPVE--FEDVA 238
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
G + G I V + F++VK +I + +A V+ ++
Sbjct: 239 FELPVGGVSQSFFTPQGIHIVKVLERRE--LPPFEKVKDEIMARQSRHEADRGVEVQVEK 296
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA----IPYKEQLLFRVFGK 446
L++ + L AG+ G + A P + F
Sbjct: 297 LKKEYRYTPDKAGMDELTNSGHTSRTLFTLAGRSYTGTDFARFAAAYPADVRKQLDAFIM 356
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK--AN 504
L ++T + ++ K K+ + K ++
Sbjct: 357 KTVLDYENTCLEQKYPDLRCLVQNYKEQALLKKIIDKEIRKRAATDEAGLKAYFEKHRSD 416
Query: 505 QLVLEYSKEGKNFRDIGKNL---------GASLLTTNQINRMDNENKFFGYDGISQ-VFS 554
E G + K + R+ Q VF+
Sbjct: 417 YQWEERRYRGIVLHGVSKRVVKQARKFLKSLPEEEWKDAIRLTFNAGAQPQIQAEQGVFA 476
Query: 555 GPVEMVKCFPIENG------LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ G +S+ V KV + + L L +
Sbjct: 477 PGDNAYVDDLVFKGKDATPLVSFPFTAVLGKKVKGPDDYQEVKDRLVADYQTYLDGRWVD 536
Query: 609 YLKSQYSVTVHDNLIQRY 626
L+S V ++ +++
Sbjct: 537 RLRSSAKVEINQEVLKTV 554
>gi|257455283|ref|ZP_05620518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter
aerosaccus SK60]
gi|257447245|gb|EEV22253.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enhydrobacter
aerosaccus SK60]
Length = 550
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/415 (8%), Positives = 100/415 (24%), Gaps = 64/415 (15%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + S + + Q V + L ++LD L++
Sbjct: 143 DGVIAIVNDTPILRSQLDRA-VAQASAQLQAQNKPVPPAQ----QLYPQVLDQLITKQIQ 197
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHG--------KDNKFSHDVFVSRLAREGINEKEY 151
I+ GL+A+ V + +G + L ++ +
Sbjct: 198 LDLIKRQGLQAEENAVNAALTNLAQQNGVASLAEFQQKLDAQRAGGYQALRQKVSEDLAI 257
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ L+ + + + ++ + + + +
Sbjct: 258 QTLQQQQLASRIKISDQDVDNFLKSPESNALEKSQYRTLHIRVPFIADAAGKTSDKQKKQ 317
Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN--------------------- 250
LT + K+ + +
Sbjct: 318 ALTVATQIAKNLQAENANIEQIMTDAQANYNAQIQGGDMGYHVAAELPTELSKNITALEV 377
Query: 251 ------------DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------FQS 289
+ +K + + ++ ++
Sbjct: 378 GQVTNPIATAEGYNVIKLVDKRGGQQKIIDQWHTRHILISPSTALPADMAKQQIDTIYEK 437
Query: 290 LKKGKKFIQLAEEQGKSL----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS 345
L++G+ F LA K + LG S+ + +S+ D++
Sbjct: 438 LRQGEDFATLASTYSKDPGSASNGGDLGWVSEGDMVPS--FESMMKQTSVNDYSVPFQTQ 495
Query: 346 FGYVIAHVSNIKP---SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
FG+ I V + S ++ + +M + +++ + +
Sbjct: 496 FGWHILKVDEKRQKDVSDVYRKNMAREILYQRMAPQALDDWMQDLRAQAYVKIMQ 550
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 19/211 (9%), Positives = 63/211 (29%), Gaps = 3/211 (1%)
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ ++ + G + + + + Y +++ +
Sbjct: 338 QIMTDAQANYNAQIQGGDMGYHVAAELPTELSKNITALEVGQVTNPIATAEGYNVIKLVD 397
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
+ + +++ T + +++ + + E ++G++F + +
Sbjct: 398 KRGGQQKIIDQWHTRHILISPSTALPADMAKQQIDTIYEKLRQGEDFATLASTYSKDPGS 457
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---K 587
+ + ++ + P + + + KV + V + K
Sbjct: 458 ASNGGDLGWVSEGDMVPSFESMMKQTSVNDYSVPFQTQFGWHILKVDEKRQKDVSDVYRK 517
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ L Q M LD + L++Q V +
Sbjct: 518 NMAREILYQRMAPQALDDWMQDLRAQAYVKI 548
>gi|261378504|ref|ZP_05983077.1| SurA/PPIASE domain protein [Neisseria cinerea ATCC 14685]
gi|269145052|gb|EEZ71470.1| SurA/PPIASE domain protein [Neisseria cinerea ATCC 14685]
Length = 331
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 10/150 (6%), Positives = 39/150 (26%), Gaps = 7/150 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 54 SDGIAAVADNEVITRRRLAQAVADAKANLPKGV-------QISDTALTEQVLMQLVNQSL 106
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P + ++ S +A + + +
Sbjct: 107 IVQAGKRRNIQAGEAEIAAVVAQNPSLKNLSAEQRRELADSIIAEKVRQQAVMQNSRVSE 166
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
+ +
Sbjct: 167 AEVDRFIEQAQKQGVTLPEGEPMRQYRAQH 196
>gi|325202891|gb|ADY98345.1| PPIC-type PPIASE domain protein [Neisseria meningitidis M01-240149]
gi|325207310|gb|ADZ02762.1| surA/PPIASE domain protein [Neisseria meningitidis NZ-05/33]
Length = 348
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 35/131 (26%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 71 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------EAQISESELSRQVLMQLVNQSL 123
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++ D + +A + + +
Sbjct: 124 IVQAGKRRNIQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 183
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 184 AEIDAFLEQAQ 194
>gi|325137107|gb|EGC59703.1| rotamase [Neisseria meningitidis M0579]
Length = 360
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 35/131 (26%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 83 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------EAQISESELSRQVLMQLVNQSL 135
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++ D + +A + + +
Sbjct: 136 IVQAGKRRNIQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 195
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 196 AEIDAFLEQAQ 206
>gi|325131008|gb|EGC53735.1| PPIC-type PPIASE domain protein [Neisseria meningitidis OX99.30304]
Length = 339
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 35/131 (26%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 62 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------EAQISESELSRQVLMQLVNQSL 114
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++ D + +A + + +
Sbjct: 115 IVQAGKRRNIQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 174
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 175 AEIDAFLEQAQ 185
>gi|254805678|ref|YP_003083899.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
meningitidis alpha14]
gi|254669220|emb|CBA08040.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
meningitidis alpha14]
Length = 351
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 35/131 (26%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 74 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------EAQISESELSRQVLMQLVNQSL 126
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++ D + +A + + +
Sbjct: 127 IVQAGKRRNIQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 186
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 187 AEIDAFLEQAQ 197
>gi|319411235|emb|CBY91642.1| peptidyl-prolyl cis-trans isomerase SurA [Neisseria meningitidis
WUE 2594]
Length = 360
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 35/131 (26%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 83 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 135
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++ D + +A + + +
Sbjct: 136 IVQAGKRRNIQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 195
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 196 AEIDAFLEQAQ 206
>gi|262044914|ref|ZP_06017956.1| peptidylprolyl cis-trans isomerase SurA [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259037641|gb|EEW38870.1| peptidylprolyl cis-trans isomerase SurA [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 428
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIVLQMGQKMGVKISEDQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
N + D SRLA EGIN Y + K + ++V V
Sbjct: 107 NNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRIT 151
Score = 42.2 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 28/370 (7%), Positives = 88/370 (23%), Gaps = 7/370 (1%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q + ++ E ++Q+V ++ + + +A++ +L +
Sbjct: 58 QQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISEDQLDQAIANIAKQNNMTLDQMRSR 117
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ + + + + V + + +
Sbjct: 118 LAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLS 177
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ I ++ +E ++I D I
Sbjct: 178 HILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSA-DQQALKGGQMGWGRI 236
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKT 492
+ + + G ++ ++ + EV +
Sbjct: 237 QELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSP 296
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQ 551
+ + +K Q+ E F K + NQ + F
Sbjct: 297 IMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDA 356
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ P+ + + + ++ + +KD+ L + + +
Sbjct: 357 LMRLNKGQT-SGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQ 415
Query: 609 YLKSQYSVTV 618
++ V +
Sbjct: 416 EQRASAYVKI 425
>gi|296134820|ref|YP_003642062.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
K12]
gi|295794942|gb|ADG29732.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thiomonas intermedia
K12]
Length = 282
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/117 (9%), Positives = 35/117 (29%), Gaps = 1/117 (0%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+A +++ + F + + + + + V V
Sbjct: 147 EEAKRVLDALRGGKQTFTALALHHSIGQNAELGGALGWQSEQAMSAEVLGVVRKLQPGQV 206
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
PI G + + ++ + P + ++ + Q + + L + + L +
Sbjct: 207 -AGPIALGENLAIIQLVAERTPPKPDFEQLKPQIEQQLRQAALQAHVQELAKNAKID 262
>gi|239616790|ref|YP_002940112.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia
TBF 19.5.1]
gi|239505621|gb|ACR79108.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Kosmotoga olearia
TBF 19.5.1]
Length = 673
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/363 (7%), Positives = 95/363 (26%), Gaps = 38/363 (10%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS---------------TVVSVGR 48
+RK + + ++ + W ++ + S + ++
Sbjct: 6 WMRK-IQVPIIWTIAILFAAGVIWWSVATYMSGKSRETGSTTPTNSARPEDAFAYLTKDG 64
Query: 49 QK-------VPFSSFINSWKQELGMISQKIGFVVN----SERARSVGLDKKILDNLVSGA 97
+ +S + ++ + L +SQ+ + S + + +L +L+
Sbjct: 65 TPLEDPIYWISYSEYDDTVRDVLSSLSQRNIQLDPYFKGSAGMSEIDVRYMVLLDLIDQK 124
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
L + + + + + + S + + +++ + + + + + K
Sbjct: 125 ILIYYAKKHNIYPTEDEINTRVEEIVSKYT-----SDENYKAQIEQYYGSVEAFKEKVRK 179
Query: 158 MLSRTDVVGMFVG------GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ + + + + + V+ + + + N
Sbjct: 180 SIFPSVLKEKVQNDVLKDVDQKLKTYFEENKDEIKNKYERVEASHILLTSEASALELKNE 239
Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
+L + + + + + E A E E +
Sbjct: 240 LLNGAINFSDAASEFSIDRNSAVLGGSLGSFGHGQMVKEFEDAAFSATPGEIVGPVETKY 299
Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS 331
L+ K + F LK + Q + ++ + D
Sbjct: 300 GFHLIKVATKTVFDTFDELKSSSAYDQFKNDYESDEFKKWFENYKNNEKFGYVINDEELK 359
Query: 332 LAK 334
+
Sbjct: 360 IYN 362
>gi|221639318|ref|YP_002525580.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
sphaeroides KD131]
gi|221160099|gb|ACM01079.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
sphaeroides KD131]
Length = 405
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 18/161 (11%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+T+V+ +V+ AL + + V + + F
Sbjct: 2 KTFVSHCLALVVAAGLTFTSAPGALAQNLFAPRL-VVNDRVITNYEFEQRV-----RFLT 55
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+G + E K+ +D L+ E GL+A ++ +
Sbjct: 56 ILGATGDVE--------KQAMDALIEDKIRFYAAEQAGLKATEEQIKEGMEE----FAGR 103
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
S + F + L + G+ + + D L +++ G
Sbjct: 104 ANLSAEQFAAELGKAGVAVETFRDFVHAGLIWRELMRAKFG 144
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 12/89 (13%), Positives = 25/89 (28%), Gaps = 1/89 (1%)
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ-EKD 588
T Q+ R D ++ V + G V+ V ++
Sbjct: 315 TEQQLRRTTLPLAQVPQDVALELAGLDAGEVSSSALPGGTRRVLMLCARRPVSAEPIDRG 374
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L D+ +A L++ +
Sbjct: 375 RLAQALANQSISASADAYMADLRANAIIR 403
>gi|254671556|emb|CBA09191.1| PPIC-type PPIASE domain protein [Neisseria meningitidis alpha153]
Length = 366
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 35/131 (26%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 89 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------EAQISESELSRQVLMQLVNQSL 141
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++ D + +A + + +
Sbjct: 142 IVQAGKRRNIQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 201
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 202 AEIDAFLEQAQ 212
>gi|121634150|ref|YP_974395.1| putative rotamase [Neisseria meningitidis FAM18]
gi|120865856|emb|CAM09589.1| putative rotamase [Neisseria meningitidis FAM18]
Length = 405
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 35/131 (26%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 128 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------EAQISESELSRQVLMQLVNQSL 180
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++ D + +A + + +
Sbjct: 181 IVQAGKRRNIQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 240
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 241 AEIDAFLEQAQ 251
>gi|298372477|ref|ZP_06982467.1| ppic-type ppiase domain-containing protein [Bacteroidetes oral
taxon 274 str. F0058]
gi|298275381|gb|EFI16932.1| ppic-type ppiase domain-containing protein [Bacteroidetes oral
taxon 274 str. F0058]
Length = 650
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 75/671 (11%), Positives = 167/671 (24%), Gaps = 92/671 (13%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L + + + + + S+ ++++G+ KV F + + +
Sbjct: 5 ILALTVI------VISLVMNAQDSNILMTLGKNKVTKDDFEYLFLKNRTNVKT------- 51
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR---------VWGEIARSPLFHG 127
+ +D Q + L+ E+
Sbjct: 52 ---------KPQTIDEY------LQTYKKFRLKVIDAEALGYDTLGSFRKELDSYRNQMA 96
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
D + + N ++ ++ +L L +
Sbjct: 97 IGYLTDKDKEKALIEEAYRNMQQDVEASHILLLLPQNATPEDTAKVYQKALNIIKRLKKE 156
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
R+V ++ + Q + I+
Sbjct: 157 NFRTVATAESDDVGTKDNGGYLGWITGQMMVYPVEKELYSLPIGKISSPIRTGYGYHIIK 216
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS- 306
++N K ++ + E + LK G F +A+E
Sbjct: 217 VTNRRQAVGKVKVAHILKQFPENATKEQRAKLKSEIYAIYDKLKNGADFASMAKENSDDE 276
Query: 307 ---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
S L F + +V ++ F L KGD + I +G+ I + + KP S
Sbjct: 277 MSANSGGVLNEFGVGRMVEV-FENTAFGLKNKGDISSPIETPYGWHIIQLIDRKP--VDS 333
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
F+++K DI + K+ + + + + + D
Sbjct: 334 FEKMKSDIITHFGFDGRYDACKKSFVDKLKNEYDYKFNQDAYKELIDYARRYNRPDSNYL 393
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKD------------------HTVALPDGSYMW 465
G K + L K + +
Sbjct: 394 IGAGSLSNDWLIKIKDLSVSPQKYVDYVYSMSKYKDNSAVAQTHGLINSFIDDEIIRFED 453
Query: 466 VQIKESIPARDRKLEEVLTDV-KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
++++ P ++E + + K E+ L + + K + +
Sbjct: 454 SRLEQKYPEFRHLIQEYHDGILLFNISNDKVWEKAIKDTAGLKTFFEQNIKRYAWQTPHY 513
Query: 525 GASLL----TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-----------PIENGL 569
++ K + S + V P+ + L
Sbjct: 514 KGKIIYCKDPVTAKTLQKKFKKMTASQIAEHIASLNKDSVVVEYRSGLWEKGENPVIDNL 573
Query: 570 SY--------------VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ VF + + +T L S IA L+ +Y
Sbjct: 574 AFGNKAASYQTPKEYPYVFVAGKVLKSMPEVYTDVRAAVTTDYQDYLEKSWIADLEKRYP 633
Query: 616 VTVHDNLIQRY 626
TV +++R
Sbjct: 634 ATVDTKVLERI 644
>gi|304389108|ref|ZP_07371152.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
13091]
gi|304336981|gb|EFM03171.1| peptidyl-prolyl cis-trans isomerase [Neisseria meningitidis ATCC
13091]
Length = 348
Score = 51.0 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 35/131 (26%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 71 SDGIAAVADNEVITRRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 123
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++ D + +A + + +
Sbjct: 124 IVQAGKRRNIQASEAEIDAVVAKNSALKNLSPAQRRDFADNIIAEKVRQQAVMQNSRVSE 183
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 184 AEIDAFLEQAQ 194
>gi|302534870|ref|ZP_07287212.1| lipoprotein [Streptomyces sp. C]
gi|302443765|gb|EFL15581.1| lipoprotein [Streptomyces sp. C]
Length = 212
Score = 51.0 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 8/141 (5%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELG-MISQKIGFVVNSERARSVGLDKKILDNL 93
+ T VG +++ S+ + G + A GL++ L+ +
Sbjct: 28 SGETRPGTAAVVGGERITTSALQAQVGDVRAAQDKSEQGAQLIGATA---GLERLKLNKM 84
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
+ A L++ ED GL V + + + L + + +
Sbjct: 85 IQSAVLERAAEDAGLSVSPKEVQD----VRKAQLEQLGGEKALRDAALQQAQLAPGQIEA 140
Query: 154 HYTKMLSRTDVVGMFVGGMRP 174
L R + + +
Sbjct: 141 DTRFKLLRDKLFAHYGSQDKA 161
>gi|282882218|ref|ZP_06290857.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B]
gi|281297983|gb|EFA90440.1| foldase protein PrsA [Peptoniphilus lacrimalis 315-B]
Length = 375
Score = 51.0 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 34/137 (24%), Gaps = 19/137 (13%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + + ++ V G V ++P F S+
Sbjct: 2 FLKKFTVAVLSGLMLVSLSACGKG-------PEGVAAKVNDVEIPMEDFYKSYAIRRNQY 54
Query: 68 SQKIGFVVN------------SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
G + S+ L + +L + Q ++ + +
Sbjct: 55 VANAGGDESVLEGPIDPTGKQSKLTVDQYLKDITIKDLTETEIIKQDAAANNIKVEDSEI 114
Query: 116 WGEIARSPLFHGKDNKF 132
+ + G D +F
Sbjct: 115 QKILDQYKAQLGGDEQF 131
>gi|239941819|ref|ZP_04693756.1| putative lipoprotein [Streptomyces roseosporus NRRL 15998]
gi|239988279|ref|ZP_04708943.1| putative lipoprotein [Streptomyces roseosporus NRRL 11379]
gi|291445266|ref|ZP_06584656.1| lipoprotein [Streptomyces roseosporus NRRL 15998]
gi|291348213|gb|EFE75117.1| lipoprotein [Streptomyces roseosporus NRRL 15998]
Length = 217
Score = 51.0 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 6/147 (4%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
L VL + L A + + VG +++ S+ + +Q+
Sbjct: 9 LTVLAATLVAAPLLSACGNQAHPGAAAVVGGERIEVSAVQERAAEVRA--AQESSPQAAQ 66
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+S L++ L L+ G LD+ ED G+ + G + +F
Sbjct: 67 LVNKSGQLNRAKLHGLIFGRILDRAAEDAGVTVSRKEIQEMRQAGLAQQGGEEQFE---- 122
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDV 164
L + + + + + +
Sbjct: 123 AMMLQQRWVAPDQIDADMRQEVQLPKL 149
>gi|94310806|ref|YP_584016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
metallidurans CH34]
gi|93354658|gb|ABF08747.1| Peptidyl-prolyl cis-trans isomerase [Cupriavidus metallidurans
CH34]
Length = 264
Score = 51.0 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/156 (10%), Positives = 57/156 (36%), Gaps = 10/156 (6%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+E ++ + + + + +E +KA ++ K G F D+ K
Sbjct: 112 EELRKQYEKIKAQFGNGKEYHVRHILVEKEADAKA---LIAKIKAGAKFEDVAKAQSKDT 168
Query: 529 LTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ +D + + + + + + + P++ + + ++ +++ +
Sbjct: 169 GSAANGGDLDWANSSSYVPEFSAAMTNLKKGQMTDTPVKTQFGWHIIELVDTRDAKIPSF 228
Query: 588 DKFISYLTQMM------NKDLLDSVIAYLKSQYSVT 617
++ L QMM ++ +++ LK + +
Sbjct: 229 EEVKPQLQQMMMGDQGWQREQFQAMMKSLKDKAKIQ 264
Score = 44.5 bits (102), Expect = 0.057, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 64/150 (42%), Gaps = 3/150 (2%)
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ + S++EL+ +YEK K ++ + + V ++ + +A +K G KF
Sbjct: 100 FEDYVRTHGASDEELRKQYEKIKAQFGNGKEYHVRHILVEKEADAKALIAKIKAGAKFED 159
Query: 299 LAEEQGKSLSDISLG---SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A+ Q K + G ++ + ++ +L K + FG+ I + +
Sbjct: 160 VAKAQSKDTGSAANGGDLDWANSSSYVPEFSAAMTNLKKGQMTDTPVKTQFGWHIIELVD 219
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVK 385
+ + SF+EVK + M + ++ +
Sbjct: 220 TRDAKIPSFEEVKPQLQQMMMGDQGWQREQ 249
Score = 44.5 bits (102), Expect = 0.058, Method: Composition-based stats.
Identities = 11/100 (11%), Positives = 27/100 (27%), Gaps = 15/100 (15%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
+ F + + A + + V + + + + G E
Sbjct: 5 VLSFSLAAVLAAGSLPAFAQNAAVVNGKPISSAKVDK--------LIASTGQPETPE--- 53
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
L + + L+ L Q G+ V ++ +
Sbjct: 54 ---LRDRARNMLIDRELLLQEANKRGITQRDD-VQEQLEQ 89
>gi|257456351|ref|ZP_05621548.1| basic membrane protein [Treponema vincentii ATCC 35580]
gi|257446437|gb|EEV21483.1| basic membrane protein [Treponema vincentii ATCC 35580]
Length = 360
Score = 51.0 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/348 (9%), Positives = 97/348 (27%), Gaps = 40/348 (11%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSV---GRQKVPFSSFINSWKQELGMISQKIG 72
+ +++ + I F+ + + V GR + + ++IG
Sbjct: 5 VITLLIALSLSI-----GAFAQTNLQPIAEVKLTGRAPITLGQLKTRV----SALEKEIG 55
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ ++ LD L++ + Q E G++ V
Sbjct: 56 RKMTFAE------RQQTLDGLINERLIVQAAEKDGIKIMDSEVNNYFNEYVSSQLGQQIS 109
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
D + ++ EY+ GM + + + +
Sbjct: 110 EADFAKLIKEKTNMSLDEYMKA--------------QNGMTLAEFKSFLRTQLTAQAYVM 155
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ + +I P++ + ++E K ++ P+ ++ ++ +K E + +
Sbjct: 156 Q---KKQKELQSIPSPTDEQIRSYYEVNKQSFVQPDTVQLFLVVAPKGDKPSAAEKTIKD 212
Query: 253 LQAE---YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
+Q + K+ + + + + + G +L + +
Sbjct: 213 IQKKLTANPKDTADIRTKSQEKNSTYQAGEIFVSKTSLAAEQLGIPMDELLKIFNMKV-- 270
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+ ++ + AK + V+ +
Sbjct: 271 GEVSPITETAVNYQCFVVIEKKDAKILGLSDVVEPGGNVSLYEYIKKM 318
>gi|182680158|ref|YP_001834304.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182636041|gb|ACB96815.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 299
Score = 50.6 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 40/119 (33%), Gaps = 2/119 (1%)
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
+ + VL+ K G++F + K + + + + + F
Sbjct: 158 ATDDDAKAVLKRLKAGEDFAKVAKEVSKD-PSADGGDLGWFTKDRMVPEFADAAFKLDEN 216
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+++ + + +V + D+ + + + + ++A L+ +
Sbjct: 217 QL-SEPVKSQFGWHIIQVLGKRQKTFPPYDQVREQVARFVIQRAQGELVAQLRKAAKIE 274
>gi|15604429|ref|NP_220947.1| protein export protein PRSA precursor (prsA) [Rickettsia prowazekii
str. Madrid E]
gi|20138858|sp|Q9ZCX6|PLP_RICPR RecName: Full=Parvulin-like PPIase; AltName: Full=29.5 kDa outer
membrane antigen; AltName: Full=Peptidyl-prolyl
cis-trans isomerase plp; AltName: Full=Rotamase plp;
Flags: Precursor
gi|3861123|emb|CAA15023.1| PROTEIN EXPORT PROTEIN PRSA PRECURSOR (prsA) [Rickettsia
prowazekii]
gi|4581486|emb|CAA61657.1| parvulin, PPIase-like protein [Rickettsia prowazekii]
gi|10303401|emb|CAC10161.1| parvulin-like PPIase [Rickettsia prowazekii]
gi|292572198|gb|ADE30113.1| Parvulin-like peptidyl-prolylisomerase [Rickettsia prowazekii Rp22]
Length = 282
Score = 50.6 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 58/153 (37%), Gaps = 10/153 (6%)
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ + + +K VK+ +E ++ +L +G NF + +
Sbjct: 125 DDEYNKYVDNLKGKEQIKVAHILVKSQKEANTVKTKL-----SKGGNFTKLAEEFSLDKA 179
Query: 530 TTNQINRMD----NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
T + + N+ + + F+ V V P++ + + KV K P+
Sbjct: 180 TASNGGIIGYIILNQPGQLVPEFEQKAFALKVNEVST-PVKTSFGWHIIKVLEKKPVPIP 238
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K++ + ++ ++L I+ L+++ + +
Sbjct: 239 TKEEAKVTIDNILAAEILKQYISDLEAKADLKI 271
>gi|322379755|ref|ZP_08054065.1| chaperone SurA [Helicobacter suis HS5]
gi|321147826|gb|EFX42416.1| chaperone SurA [Helicobacter suis HS5]
Length = 371
Score = 50.6 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/168 (12%), Positives = 53/168 (31%), Gaps = 23/168 (13%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
++V + + ++++ ++++ + +++L+
Sbjct: 117 GGIALTVNNDPITL--YQIEMQEKVNHVNRQ-----------------QAINSLILQRIQ 157
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q I+ + ++ + +V EI K N + F+ LA EGIN Y K L
Sbjct: 158 AQEIKRLKIDIEDDKVDAEIENI----AKHNGMNVSDFMRTLAGEGINPVAYKAQLKKQL 213
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+++ + +N + + D
Sbjct: 214 ETRELLRNILLFNANTNSETKMREYYNAHRDEFTVPSDVLATRYTAKD 261
>gi|121602042|ref|YP_988820.1| SurA domain-containing protein [Bartonella bacilliformis KC583]
gi|120614219|gb|ABM44820.1| SurA domain protein [Bartonella bacilliformis KC583]
Length = 325
Score = 50.6 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/208 (8%), Positives = 45/208 (21%), Gaps = 18/208 (8%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINSW 60
++K ++ F L V L + + + V +V +
Sbjct: 4 FTAVKKNKNHFLTLFFTAFLGVSSLFINVLSISPVFAQQTKVALTVNGNAITNYDIQRRI 63
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + L + + L+ I+ ++ V
Sbjct: 64 -------------AFLKLQQKKENLSVQAKNELIDEMLKKIEIKQRNIDVSDSEVDAAFE 110
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
N + + L + + K + D+ + +V +
Sbjct: 111 N----FAVQNHMTINQLSEMLTQTNVTVKHFKDYIRGQIGWGRLVNARYQAEGGLLTEQE 166
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADP 208
A + P
Sbjct: 167 VAHKILKNGGQKPSTDEYTLQRIIFVIP 194
>gi|226324373|ref|ZP_03799891.1| hypothetical protein COPCOM_02154 [Coprococcus comes ATCC 27758]
gi|225206821|gb|EEG89175.1| hypothetical protein COPCOM_02154 [Coprococcus comes ATCC 27758]
Length = 245
Score = 50.6 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
K N+L+ GK F D+ K N + + + F+ +
Sbjct: 126 EDKCNKLLESIVSGGKAFEDVAKESSTCPSGANGGDLGEFGKGQMVKEFEDAAFAAEIGH 185
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQE----KDKFISYLTQMMNKDLLDSVIAYLKSQY 614
V P++ Y + KV + K + K++ S + Q ++ + + LK +Y
Sbjct: 186 V-VGPVKTQFGYHLIKVEDKKEAEDAKLDDVKEQIKSEIMQKKQQEAYTAKVEALKKKY 243
>gi|73541086|ref|YP_295606.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
JMP134]
gi|72118499|gb|AAZ60762.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
JMP134]
Length = 264
Score = 50.6 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 56/156 (35%), Gaps = 10/156 (6%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
E D+ + + + + +E +KA ++ K G F D+ K
Sbjct: 112 DELRKQYDKIKSQFGNGKEYHVRHILVEKEADAKA---IIAKIKGGAKFEDMAKASSKDP 168
Query: 529 LTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ +D + + + + + + + P++ + + ++ +++ +
Sbjct: 169 GSAANGGDLDWANSGSYVPEFSAAMTTLKKGQMTDTPVKTQFGWHIIELVDTRDAKIPSF 228
Query: 588 DKFISYLTQMM------NKDLLDSVIAYLKSQYSVT 617
++ L QMM ++ +++ LK + +
Sbjct: 229 EEVKPQLMQMMMGDQNWQREQFQAMMKSLKDKAKIQ 264
Score = 45.6 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 29/181 (16%), Positives = 69/181 (38%), Gaps = 3/181 (1%)
Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
A ++ + + + + K S+DEL+ +Y+K K ++ +
Sbjct: 69 VQEANKRGLTQRDDIQEQLEQARLNVLAGAVFEDYVKTHGASDDELRKQYDKIKSQFGNG 128
Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVS 324
+ V ++ + +A +K G KF +A+ K + G ++
Sbjct: 129 KEYHVRHILVEKEADAKAIIAKIKGGAKFEDMAKASSKDPGSAANGGDLDWANSGSYVPE 188
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ ++ +L K + FG+ I + + + + SF+EVK + M + ++
Sbjct: 189 FSAAMTTLKKGQMTDTPVKTQFGWHIIELVDTRDAKIPSFEEVKPQLMQMMMGDQNWQRE 248
Query: 385 K 385
+
Sbjct: 249 Q 249
>gi|203287575|ref|YP_002222590.1| basic membrane protein [Borrelia recurrentis A1]
gi|201084795|gb|ACH94369.1| basic membrane protein [Borrelia recurrentis A1]
Length = 336
Score = 50.6 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/191 (11%), Positives = 60/191 (31%), Gaps = 18/191 (9%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
F+ FL++ + + S + ++ VV + + + + F + + + G +++
Sbjct: 4 FLCFLLFCVLG-ITSFAQNTPVVIINLHSNEIITKTEFDSKVNT----LKKTQGRDLSNI 58
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
K++L L++ Q G++ V I + +
Sbjct: 59 E------KKQVLQVLIADVLFGQEALKQGIKVADDEVMQTIRS----QFGLASLTDEQIK 108
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
+ +G N E + + L+ +V + + + + V
Sbjct: 109 QMIESQGTNWNELLASMKRSLAAQKLVLKIAQPKFSEIKAPSEKEVIEYYEANKTKFVNP 168
Query: 199 NRHVPAIADPS 209
+ + S
Sbjct: 169 DIARISHVFFS 179
>gi|311029004|ref|ZP_07707094.1| hypothetical protein Bm3-1_00328 [Bacillus sp. m3-13]
gi|311032299|ref|ZP_07710389.1| hypothetical protein Bm3-1_17466 [Bacillus sp. m3-13]
Length = 309
Score = 50.6 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 33/133 (24%)
Query: 6 RKASRTWVAKIFLVVLFV-----------PFLIWGLSD-ALFSVSGSSTVVSVGRQKVPF 53
R+ + WV I ++ + F + SD + F ++ V +VG +
Sbjct: 5 RRLKQKWVWNIIFGLVIINCLTLAVVVKQTFSLREASDASAFVNGQANIVATVGDTVITR 64
Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
L + G +++L +V+ + Q + +
Sbjct: 65 KD-------MLEELEGMYG--------------QEMLTKMVNNEVVKQIAKKYKVTVSEQ 103
Query: 114 RVWGEIARSPLFH 126
V E +
Sbjct: 104 SVDREWKMIKTMY 116
>gi|325679983|ref|ZP_08159552.1| putative lipoprotein [Ruminococcus albus 8]
gi|324108421|gb|EGC02668.1| putative lipoprotein [Ruminococcus albus 8]
Length = 416
Score = 50.6 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/258 (12%), Positives = 72/258 (27%), Gaps = 5/258 (1%)
Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIG---FVVNSERARSVGLDKKILDNLVSGATLDQ 101
+V + F F + L Q G + + +++ + D+
Sbjct: 81 TVDGIDISFDEFRFYYFYNLDSYKQNYGVTEDALRDNQVAYNSFLSEVVRAIKQELVTDK 140
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G+ D ++ + + + K N S + F + R + E+ Y + + +
Sbjct: 141 LAAEHGIVLDDE--DQQVVDNNMQNAKANYDSEEEFQKDMQRAHLTEEIYKKMFVRAQTY 198
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
V+ D + + + V + A+ ++ + E
Sbjct: 199 NKVMSTLFANDGEFATSHDDFLKMIQDPEQYAHEVHIMIPFYSQAELDDSTAEGYDELTL 258
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ S + + E K E E KN E + + +
Sbjct: 259 SQKIGAKSAAYSALDDEAKETAKAKAKEVAEEALERAKNGEDFNKLVEEYGWDIGLEDPT 318
Query: 282 EADEAFQSLKKGKKFIQL 299
+ + G L
Sbjct: 319 KGYYMKKDNTGGYPEDLL 336
>gi|197119425|ref|YP_002139852.1| PpiC-type peptidylprolyl cis-trans isomerase [Geobacter
bemidjiensis Bem]
gi|197088785|gb|ACH40056.1| peptidylprolyl cis-trans isomerase, PpiC-type [Geobacter
bemidjiensis Bem]
Length = 325
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/281 (13%), Positives = 83/281 (29%), Gaps = 13/281 (4%)
Query: 346 FGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
+ + I + K + ++ K + D + L + D
Sbjct: 47 YYHQIKANVERTLAKYKRLGAAKVSDDVRKQVQKDEINRQVDMELLVQAGEKLKQTDLEK 106
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ E ++S+ P + K + KE + L +D V D +
Sbjct: 107 KMEALLSLKSPQGSTSAKKDESKEKEMREQLRRNLLAESYLIQRGIQDVRVPEEDLKRFY 166
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKT----AEEVSSKANQLVLEYSKEGKNFRDIG 521
+ A+ E V K + ++K ++ E + K+F ++
Sbjct: 167 ----KDNSAKFTVPEAVKASHIMITVNKKATPEEIAQANAKIVKVREEVLQGKKSFEELA 222
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
K + + + +F + F V V ++ + V KV + K
Sbjct: 223 KEHSSGDSASKGGDLGYINPQFMPPEFDKVAFQLKVGEV-SDVVKTKFGFHVIKVFDKKP 281
Query: 582 GPVQEKDKFI----SYLTQMMNKDLLDSVIAYLKSQYSVTV 618
VQE + +L + + L+ + V
Sbjct: 282 SRVQEFAEVKGLLEKFLLNQYQERKRTEIAMELRRDARIEV 322
>gi|158319280|ref|YP_001511787.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
oremlandii OhILAs]
gi|158139479|gb|ABW17791.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
oremlandii OhILAs]
Length = 249
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 4/124 (3%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
KAN+++ E EG +F + K + + + F V
Sbjct: 127 EEKANEVLKEI-NEGLSFEEAAKKHSTCPSNAQGGDLGHFTRGRMVPEFENAAFDMEVGA 185
Query: 560 VKCFPIENGLSYVVFKVTNSKV---GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
V +++ V + + K + L+ M ++L + + LK +Y V
Sbjct: 186 VSAPVKTQFGYHIIKAVNKVEESVKPFAEVKMQLNQQLSMMKQQELYLNKVDELKKEYEV 245
Query: 617 TVHD 620
+++
Sbjct: 246 QINE 249
Score = 45.2 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 25/247 (10%), Positives = 64/247 (25%), Gaps = 16/247 (6%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + +VG +++ F + + S K+++ LV+
Sbjct: 2 DNNKVLATVGGREITQQDFDLLLGSLNPQQAMQFN---------SEAGKKQLVQELVNQE 52
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
GL+ E+ DN + L ++E++ +++Y +
Sbjct: 53 LFLLEALKNGLD------KDEVFIQEAQRMHDNILKQYAMHNVLKNATVSEEDMLNYYNE 106
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ N + + +H ++ L +
Sbjct: 107 HTDSFKEPESMQASHILVESEEKANEVLKEINEGLSFEEAAKKHSTCPSNAQGGDLGHFT 166
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ K + + E K + +++ +QL
Sbjct: 167 RGRMVPEFENAAFDMEVGAVSAPVKTQFGYHIIKAVNKVEESVKP-FAEVKMQLNQQLSM 225
Query: 278 PNQKEAD 284
Q+E
Sbjct: 226 MKQQELY 232
>gi|189502175|ref|YP_001957892.1| hypothetical protein Aasi_0785 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497616|gb|ACE06163.1| hypothetical protein Aasi_0785 [Candidatus Amoebophilus asiaticus
5a2]
Length = 445
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/188 (9%), Positives = 48/188 (25%), Gaps = 13/188 (6%)
Query: 17 FLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
L + F ++ + SV Q + S ++
Sbjct: 7 ILWIAIGVFFTQHTLMAQTPQGRLLDKVIASVDDQPILQSELDAEYQLYQAQ-------- 58
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ A ++L+N+V L + +G V + ++
Sbjct: 59 ---DNASKKPTKCQVLENMVINKILLANAAKKEINVKNGEVDRYLKYRMQAILEEVGTEA 115
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ + ++E + L+ + +G + S + + + +
Sbjct: 116 RLEQYIRKPIHVFKEELRKSIREQLTIEKMRDSIIGNITISPIEVQSYFDQLPASDVPFF 175
Query: 195 IVLNNRHV 202
+
Sbjct: 176 PATVEAYQ 183
>gi|93006523|ref|YP_580960.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
cryohalolentis K5]
gi|92394201|gb|ABE75476.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter
cryohalolentis K5]
Length = 465
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 34/376 (9%), Positives = 90/376 (23%), Gaps = 60/376 (15%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
S + V + S I + Q G + A S L ++L+ L+
Sbjct: 56 NSTDGIIALVNENAILKSDLIAAIAQTQARAKA-AGEPI----ANSAQLQSEVLNALILR 110
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSP--------LFHGKDNKFSHDVFVSRLAREGINE 148
I+ +GL D + + + + + + L + I +
Sbjct: 111 ELQLSLIKRVGLNPDEASINKRLEQIAKAEGLNSIAALQQRLDSAQSGSYATLRAQLIED 170
Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ ++ + ++ + + ++ V +++ + A
Sbjct: 171 AAIQALQQRQITNRVRISEQDIDAFLASPEAKRLNQSEYQTVHVRVPYMDDYSRLSEAQR 230
Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK----------------------- 245
++A+ + + + +
Sbjct: 231 NDALKVAQKLRTRLLVPNVNVAEAIAASQGSYPIPLQGGDMGFHKAAALPTELSSEITKL 290
Query: 246 ---------IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK----- 291
+ ++ K ++ + +A K
Sbjct: 291 EVGAVSAPLVTPEGIDIIKLANKKANDTMLVPQWNTRHILVKVDELQTDALAEQKINDLY 350
Query: 292 ----KGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
G F LA L ++ + +++ GD++
Sbjct: 351 SQLRNGAAFDSLASTYSDDPGSAGRGGDLDWVGEDQMIAP--FEAMMKNTAVGDYSAPFK 408
Query: 344 GSFGYVIAHVSNIKPS 359
FG+ I V +
Sbjct: 409 TQFGWHILKVEGKRQQ 424
Score = 39.8 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 26/297 (8%), Positives = 73/297 (24%), Gaps = 4/297 (1%)
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ D+ ++ T + S + A +++ + + + +
Sbjct: 168 IEDAAIQALQQRQITNRVRISEQDIDAFLASPEAKRLNQSEYQTVHVRVPYMDDYSRLSE 227
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ L+ L T + + L
Sbjct: 228 AQRNDALKVAQKLRTRLLVPNVNVAEAIAASQGSYPIPLQGGDMGFHKAAALPTELSSEI 287
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
K + + + P+G + + + + ++T K N
Sbjct: 288 TKLEVGAVSAPLVTPEGIDIIKLANKKANDTMLVPQWNTRHILVKVDELQTDALAEQKIN 347
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
L + + G F + + + +D + + P
Sbjct: 348 DLYSQL-RNGAAFDSLASTYSDDPGSAGRGGDLDWVGEDQMIAPFEAMMKNTAVGDYSAP 406
Query: 565 IENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + KV + V + + L Q + + + L++ + V
Sbjct: 407 FKTQFGWHILKVEGKRQQDVSDEYRRTMARQALYQRLAPQAKEDWLQELRAGAYIQV 463
>gi|302381139|ref|YP_003816962.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas
subvibrioides ATCC 15264]
gi|302191767|gb|ADK99338.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brevundimonas
subvibrioides ATCC 15264]
Length = 317
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 41/136 (30%), Gaps = 7/136 (5%)
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA-SLLTTNQINRMDNENK 542
+++ +T E V+ +G +F + + + + +
Sbjct: 148 EEIRVRLILSRTKPEA-----DAVIGILGQGASFEAVAQERSIDEATRFSGGDLGYSTAD 202
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
+ P P + + V +V + + D+ + + + +
Sbjct: 203 VMPQAYAGALRDAPAGST-VGPFQTEGGWAVLRVEDRRRESPPTLDQARPQIVRYLTYEG 261
Query: 603 LDSVIAYLKSQYSVTV 618
+ ++ L+ + V V
Sbjct: 262 VRQLLEELRGKAKVDV 277
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R + V F VL + G D G V V Q + S +
Sbjct: 1 MRHSRNPLVLIAFSAVLALAACGRGGGDDQPPEPGDRAVARVQDQTIWASDVKRE---AV 57
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
G ++ + L +++LD +V L + E GL+
Sbjct: 58 AQGLVGEGEPLD----ITSNLFRRVLDEVVDQKLLAREAERRGLDNS 100
>gi|283779465|ref|YP_003370220.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
DSM 6068]
gi|283437918|gb|ADB16360.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
DSM 6068]
Length = 325
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/188 (12%), Positives = 48/188 (25%), Gaps = 5/188 (2%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG-MISQKIGFVVNS 77
V +P L+ A +S T+ +V + + + S + V
Sbjct: 12 VAASLPLLLLVAMGAAAELSADETLATVNGHAITRADVDAFVAKLAPPKSSTQPPQPVEV 71
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+ L + L LV + F+E L A + +A
Sbjct: 72 PVVDNPQLRAETLAMLVDRELVLSFLERSKLAASEEDIDLIVASFTRELTTQGL----TL 127
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
L ++ ++ + S V + + F V ++ L
Sbjct: 128 DDHLKQQQLSLARFRRQLLWNESWKKYVARQTTDANLEKFFTKRVRDFDGTRIRVAHLRL 187
Query: 198 NNRHVPAI 205
Sbjct: 188 PVDANATP 195
>gi|303257435|ref|ZP_07343448.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
bacterium 1_1_47]
gi|302859792|gb|EFL82870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderiales
bacterium 1_1_47]
Length = 259
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 2/142 (1%)
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ EEV + V+ + + + +++ G +F I K T Q
Sbjct: 106 KTYEEVKKQYDPNEIKVRHILVKTEQEAKDIIKSLNAGGDFATIAKEKSLDQGTAAQGGE 165
Query: 537 MDNEN--KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
+ N + + + P + L Y V ++ + + P+ D +
Sbjct: 166 IPFTNIRRIAIPGFAETAMALNKGALLPVPFHSALGYHVIQLQDKREVPLPSFDALKPQI 225
Query: 595 TQMMNKDLLDSVIAYLKSQYSV 616
+ + +A L +
Sbjct: 226 QNLAAQRQAQQYMADLMKNAKI 247
>gi|237752063|ref|ZP_04582543.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376630|gb|EEO26721.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 271
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 46/161 (28%), Gaps = 8/161 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN----FRDIG 521
V++ +S + + + K S+A ++ E K GKN F +
Sbjct: 109 VKVLDSEITKFYNENKSKFVQPETIKASHILVTSESEAKAIIAELKKAGKNVAGKFDSLA 168
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ N + + F P+++ Y V V + K
Sbjct: 169 REKSKDGSAQNGGELGYIAKNQVVPEFANAAFKLQKGAYTTTPVKSQFGYHVILVEDKKP 228
Query: 582 GPVQEKDKFISYLTQMMN----KDLLDSVIAYLKSQYSVTV 618
+ Q + ++ + L+ + + +
Sbjct: 229 AGTIALKDIKGQIEQNLKLKKFQEEIKKEGEELRKKAKIEL 269
Score = 37.1 bits (83), Expect = 8.9, Method: Composition-based stats.
Identities = 42/209 (20%), Positives = 86/209 (41%), Gaps = 9/209 (4%)
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
S + N+ + A + + + + + ++ K+++
Sbjct: 53 PSEAKTQVINQAIERKLLIEQAKKEKVQNSKEYKEAVASVEEDLMLEIWMRKQMDKVKVL 112
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK-----FIQLAEEQG 304
+ E+ Y +NK K+ PE ++ ++ EA LKK K F LA E+
Sbjct: 113 DSEITKFYNENKSKFVQPETIKASHILVTSESEAKAIIAELKKAGKNVAGKFDSLAREKS 172
Query: 305 KS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
K + LG +K + A++ F L K T + FGY + V + KP+ T
Sbjct: 173 KDGSAQNGGELGYIAKNQVV-PEFANAAFKLQKGAYTTTPVKSQFGYHVILVEDKKPAGT 231
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKR 390
++ +++K I +++ K E++K++ +
Sbjct: 232 IALKDIKGQIEQNLKLKKFQEEIKKEGEE 260
>gi|114570817|ref|YP_757497.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
MCS10]
gi|114341279|gb|ABI66559.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Maricaulis maris
MCS10]
Length = 317
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/246 (10%), Positives = 67/246 (27%), Gaps = 14/246 (5%)
Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
R+ + + + + S + + L+D ++ +
Sbjct: 48 RVERTMIRRSDVEREALAQDGEEASPVPAMGSAEFDRVLEELIDQRLLALEARRRGLHQS 107
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYM---WVQIKESIPARDRKLEEVLTDVKKDWKT 492
+E ++ L + D + +I E EEV
Sbjct: 108 EEARRRLALAEERILGNVLVETVIDDAVTDETIQRIYEEQVRLIPLGEEVRARHILVQTQ 167
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNENKFFGYDGISQ 551
+ + +G++F ++ + T + + +
Sbjct: 168 EEAV---------AIKALIDQGRDFAELAVAMSEDQATRLEGGDLGYFSREGILPAFGAV 218
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
F+ P V P + + V + + P + + + D L+++I L+
Sbjct: 219 AFATPEGAV-SEPFRTEFGWHLLTVVDRRRQPPPSLESLRPNIARFYTFDQLEALIDGLR 277
Query: 612 SQYSVT 617
Q +
Sbjct: 278 DQAEIE 283
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 18/75 (24%), Gaps = 7/75 (9%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V R + S + G + A ++L+ L+ L
Sbjct: 43 DPVVARVERTMIRRSDVERE-------ALAQDGEEASPVPAMGSAEFDRVLEELIDQRLL 95
Query: 100 DQFIEDIGLEADHGR 114
GL
Sbjct: 96 ALEARRRGLHQSEEA 110
>gi|329888709|ref|ZP_08267307.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568]
gi|328847265|gb|EGF96827.1| PPIC-type PPIASE domain protein [Brevundimonas diminuta ATCC 11568]
Length = 313
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 7/109 (6%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
R+ + + + D V V + V S
Sbjct: 4 RRPLHSLFLVVVAGLALGVAACGRGGDEAAPEKNDRVVARVNDRAVWASDVRRE-----A 58
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ IG + S L ++++D +V L E GL++
Sbjct: 59 VAQGLIGEDDPLD--ASSELFRRVMDEVVDQKLLAAEAERRGLDSSPAA 105
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 18/152 (11%), Positives = 43/152 (28%), Gaps = 9/152 (5%)
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ R EEV + + + E ++ D + G
Sbjct: 137 RLYAEQQRLARATEEVRVRLILAPTKEQADAVLGVLGQGAAFEAVAAQRSIDDATRYSGG 196
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
L + + G PI+ + V KV + +V
Sbjct: 197 DL--------GYSTLDVLPGPY-AAALQGQTPGAVVGPIQTETGWAVLKVEDRRVETPPT 247
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
++ + + + + + ++ L+ Q V +
Sbjct: 248 LEQARPQIVRYLTYEGVRQLLEQLRGQAEVEI 279
>gi|254420790|ref|ZP_05034514.1| PPIC-type PPIASE domain protein [Brevundimonas sp. BAL3]
gi|196186967|gb|EDX81943.1| PPIC-type PPIASE domain protein [Brevundimonas sp. BAL3]
Length = 309
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/150 (10%), Positives = 47/150 (31%), Gaps = 10/150 (6%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKA--------NQLVLEYSKEGKNFRDIGKNLGA-SL 528
+ V T + + KT+EE+ + + V+ +G +F +
Sbjct: 120 SDQAVQTLYNEQLRLAKTSEEIRVRLILSRTKPEAEAVIGILGQGASFEAVAMERSVDEA 179
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + + + P P + + V +V + + +
Sbjct: 180 TRFSGGDLGYSTLDVMPQAYAGALRDKPAGST-VGPFQTEGGWAVLRVEDRRKESPPTLE 238
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + + + + ++ L+ + V V
Sbjct: 239 QARPQIVRYLTYEGVRQLLEQLRGKAKVDV 268
Score = 41.8 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
+ VL V G D G V V + V S + G
Sbjct: 1 MALLAAVLTVAACSRGGGDDKAPEPGDRPVARVQDETVWASDVKRE---AVAQGLVGEGE 57
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
++ + L +++LD ++ L + E L+A
Sbjct: 58 PLD----VTSDLFRRVLDEVIDQKLLAREAERRRLDAS 91
>gi|146277165|ref|YP_001167324.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
sphaeroides ATCC 17025]
gi|145555406|gb|ABP70019.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter
sphaeroides ATCC 17025]
Length = 405
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 17/126 (13%)
Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE 104
V + + F +G + L+K+ +D L+ E
Sbjct: 36 VVNDRVITNYEFEQRV-----RFLTILGATGD--------LEKQAMDALIDDKIRLDAAE 82
Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
GL+A +V + S + FV+ L + G+ + + D L ++
Sbjct: 83 RAGLKATESQVTEGMEE----FAGRANLSAEAFVAELGKAGVAPETFRDFVHAGLVWREL 138
Query: 165 VGMFVG 170
+ G
Sbjct: 139 MRARFG 144
>gi|203284033|ref|YP_002221773.1| basic membrane protein [Borrelia duttonii Ly]
gi|201083476|gb|ACH93067.1| basic membrane protein [Borrelia duttonii Ly]
Length = 336
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/191 (11%), Positives = 60/191 (31%), Gaps = 18/191 (9%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
F+ FL++ + + S + ++ VV + + + + F + + + G +++
Sbjct: 4 FLCFLLFCVLG-ITSFAQNTPVVIINLHSNEIITKTEFESKVNT----LKKTQGRDLSNI 58
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
K++L L++ Q G++ V I + +
Sbjct: 59 E------KKQVLQVLIADVLFGQEALKQGIKVADDEVMQTIRS----QFGLASLTDEQIK 108
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
+ +G N E + + L+ +V + + + + V
Sbjct: 109 QMIESQGTNWNELLASMKRSLAAQKLVLKIAQPKFSEIKAPSEKEVIEYYEANKTKFVNP 168
Query: 199 NRHVPAIADPS 209
+ + S
Sbjct: 169 DIARISHVFFS 179
>gi|307942651|ref|ZP_07657999.1| cell-binding factor 2 [Roseibium sp. TrichSKD4]
gi|307774290|gb|EFO33503.1| cell-binding factor 2 [Roseibium sp. TrichSKD4]
Length = 286
Score = 50.6 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/157 (13%), Positives = 56/157 (35%), Gaps = 3/157 (1%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
++ A D++ + D + + + + E+ + A ++ + G +F ++ K
Sbjct: 125 EDVQAAYDKQFADFEGDEEINARHILVKEKAEADA---IVAELQGGADFVELAKEKSTGP 181
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
N + F+ P++ + V K+ + P +
Sbjct: 182 SGPNGGDLGFFVRGQMVGPFEEAAFALEPGAFTIEPVQTQFGWHVIKLEEKRKKPKPTLE 241
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ L Q + ++ V+ LK +V + D +++
Sbjct: 242 DVSAGLRQQLTRERYTKVMEDLKGYVTVEILDEGLKK 278
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 10/89 (11%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ F + + A+ + + VG ++ + + + + + +
Sbjct: 13 IMVTAFALMLGTSAVSAAEPDDVIAKVGETEITEADIAFAAQDLGQELQR-----FPPSQ 67
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGL 108
+LD +V L Q D +
Sbjct: 68 -----WRGILLDVIVDMELLAQAARDADI 91
>gi|119383650|ref|YP_914706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
denitrificans PD1222]
gi|119373417|gb|ABL69010.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paracoccus
denitrificans PD1222]
Length = 423
Score = 50.6 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 43/138 (31%), Gaps = 17/138 (12%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
++ A + +V V V + L ++ G ++E+A
Sbjct: 19 VAPAFAQGNPFQPLVYVNDSVVTRYELDQRM-RFLQILRAPDGDRASAEQA--------- 68
Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
L+ +G+ A ++ +A + F LA+ G+ ++
Sbjct: 69 ---LIDDRLRLFAARQMGIAASDAQIDAGLAE----FAGRANMDVEEFTRALAQAGVEQQ 121
Query: 150 EYIDHYTKMLSRTDVVGM 167
+ D + ++V
Sbjct: 122 TFRDFIAAGVVWRELVRQ 139
>gi|59802035|ref|YP_208747.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA 1090]
gi|59718930|gb|AAW90335.1| putative cis-trans isomerase [Neisseria gonorrhoeae FA 1090]
Length = 333
Score = 50.6 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 14/174 (8%), Positives = 45/174 (25%), Gaps = 8/174 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V + + + + + + + L +++L LV+ +
Sbjct: 56 SDGIAVVADNEVITNRRLAEAVAEAKATLPE-------DAQISESELSRQVLMQLVNQSL 108
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P ++ + +A + + +
Sbjct: 109 IVQAGKRRNIQASEAEIDAVVAQNPALKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSE 168
Query: 159 LSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ G+ + R D I +
Sbjct: 169 AEIDAFLEQAQKQGITLPEGAPLRQYRAQHILIKADSKNAAVGAESTIRKIYDQ 222
>gi|332706783|ref|ZP_08426844.1| hypothetical protein LYNGBM3L_23620 [Lyngbya majuscula 3L]
gi|332354667|gb|EGJ34146.1| hypothetical protein LYNGBM3L_23620 [Lyngbya majuscula 3L]
Length = 318
Score = 50.6 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/201 (8%), Positives = 53/201 (26%), Gaps = 23/201 (11%)
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
V + + P + + E + + + + ++
Sbjct: 128 VQKMQFLVEDVSALREPSDQVLQAYLGEHADRYTIPGKFSFAQI--YFSREMRRDRTDAE 185
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A L+ + + + + +S F G
Sbjct: 186 ARDLLNQLQ---------ANPNLERFQKLGDRSMLPITYNLASAEILSNTFGGSFGQEMA 236
Query: 563 FPIENG--------LSYVVFKVTNSKVGPVQEKDKFISYLTQM----MNKDLLDSVIAYL 610
ENG + V++ + G + + + + L + L
Sbjct: 237 GVTENGWQGPFHSAYGSHLVYVSDIEPGHNATLAEVKRDVRRDWMRDQRQQLDEQFYQQL 296
Query: 611 KSQYSVTVHDNLIQRYLDGEK 631
+ +Y+V++ + + + + E+
Sbjct: 297 RDRYTVSIDQDALNQAIQEEQ 317
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 34/297 (11%), Positives = 73/297 (24%), Gaps = 19/297 (6%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
IR + + L L W + + + +V + +
Sbjct: 30 IRILREPLLHFLVLGALLFGLYFW-VGGPTITSDSPKQI------EVSAG----TIESLK 78
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
++ G + + ++DN V L Q +GL+ + V + +
Sbjct: 79 TTWQRQWGREPLPQEL------ESLVDNYVRDEVLYQEALALGLDQNDLIVRRRVVQKMQ 132
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
F +D + L + K + R D +
Sbjct: 133 FLVEDVSALREPSDQVLQAYLGEHADRYTIPGKFSFAQIYFSREMRRDRTDAEARDLLNQ 192
Query: 185 FYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
+ L +R + I S +L+ F A + F
Sbjct: 193 LQANPNLERFQKLGDRSMLPITYNLASAEILSNTFGGSFGQEMAGVTENGWQGPFHSAYG 252
Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ +S+ E + K +Q +++ + L
Sbjct: 253 SHLVYVSDIEPGHNATLAEVKRDVRRDWMRDQRQQLDEQFYQQLRDRYTVSIDQDAL 309
>gi|182677646|ref|YP_001831792.1| hypothetical protein Bind_0653 [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182633529|gb|ACB94303.1| conserved hypothetical protein [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 306
Score = 50.6 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 48/163 (29%), Gaps = 22/163 (13%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
++ G +D + + S+ + K R
Sbjct: 20 MVVVGSTDV----QAQTIIASINGDPITNIDVDERMKMLR--------------VLRKPA 61
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
+ +++L + G++ + EI R ++ K + ++ L
Sbjct: 62 TREAAMESLYTDRLETHEAARYGVKPKDADIGQEIVRV----AQEMKVQPEALIAALQNA 117
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
G++ + H+ L+ +VG G+ S + +
Sbjct: 118 GVSPDHFKAHFGADLAFGALVGALNKGVEASETEVRKELARQG 160
>gi|331000016|ref|ZP_08323712.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
YIT 11859]
gi|329573164|gb|EGG54781.1| PPIC-type PPIASE domain protein [Parasutterella excrementihominis
YIT 11859]
Length = 268
Score = 50.6 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 2/142 (1%)
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ EEV + V+ + + + +++ G +F I K T Q
Sbjct: 115 KTYEEVKKQYDPNEIKVRHILVKTEQEAKDIIKSLNAGGDFATIAKEKSLDQGTAAQGGE 174
Query: 537 MDNEN--KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
+ N + + + P + L Y V ++ + + P+ D +
Sbjct: 175 IPFTNIRRIAIPGFAETAMALNKGALLPVPFHSALGYHVIQLQDKREVPLPSFDALKPQI 234
Query: 595 TQMMNKDLLDSVIAYLKSQYSV 616
+ + +A L +
Sbjct: 235 QNLAAQRQAQQYMADLMKNAKI 256
>gi|309781979|ref|ZP_07676709.1| peptidyl-prolyl cis-trans isomerase family protein [Ralstonia sp.
5_7_47FAA]
gi|308919045|gb|EFP64712.1| peptidyl-prolyl cis-trans isomerase family protein [Ralstonia sp.
5_7_47FAA]
Length = 265
Score = 50.6 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/202 (9%), Positives = 60/202 (29%), Gaps = 21/202 (10%)
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+L+ + K L +D + + V + + ++ K + +K
Sbjct: 65 DRELIEQDAAKRGLLERDDIQEQLAAARLNVLVAAEFEDYVKNSPATEDELHKQYDKIKA 124
Query: 496 A-------------EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NEN 541
+ A ++ + K G F DI K + +D
Sbjct: 125 QFGNGKEYHAHHILVDKEGDAKAIIAKL-KAGAKFEDIAKAQSKDKGSGANGGDLDWANP 183
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT------ 595
+ + + + + P++ + V ++ +++ + + L
Sbjct: 184 GTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDDTRDAKIPSYEDVKPQLLEMMMGD 243
Query: 596 QMMNKDLLDSVIAYLKSQYSVT 617
Q + +++ L+ + +
Sbjct: 244 QNWQRSKFQAMLKDLREKAKIQ 265
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%)
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ K + DEL +Y+K K ++ + + ++ + +A LK G KF
Sbjct: 101 FEDYVKNSPATEDELHKQYDKIKAQFGNGKEYHAHHILVDKEGDAKAIIAKLKAGAKFED 160
Query: 299 LAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A+ Q K + G P + ++ L K + FG+ + + +
Sbjct: 161 IAKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGQITQTPVKTQFGWHVIRLDD 220
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEK 383
+ + S+++VK + M + ++
Sbjct: 221 TRDAKIPSYEDVKPQLLEMMMGDQNWQR 248
>gi|297566395|ref|YP_003685367.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
DSM 9946]
gi|296850844|gb|ADH63859.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Meiothermus silvanus
DSM 9946]
Length = 322
Score = 50.6 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 1/155 (0%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE-RARSVGLDKKILDNLVSGA 97
V VG Q + S F W + Q+ G E A+ + L L
Sbjct: 29 DDPVVAEVGGQALKKSYFDFEWSFFVKTSLQRQGMPATPESEAQFERFKPQFLGRLAKDY 88
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ + E GL A V ++A + D F+ + +A + T
Sbjct: 89 AVIKASERAGLAASKEAVENQVAEARKDFESDEAFNQALSQVGIASIDDYRMLVYEALTY 148
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ L+ ++ + +
Sbjct: 149 NAYLEQLQEQVKPSESALRLIYGLSQAEFTTPETY 183
>gi|312876281|ref|ZP_07736267.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
6A]
gi|311796927|gb|EFR13270.1| conserved hypothetical protein [Caldicellulosiruptor lactoaceticus
6A]
Length = 230
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 20/200 (10%), Positives = 54/200 (27%), Gaps = 19/200 (9%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K S+ +A I + + + ++ G S A V V K+ ++ E
Sbjct: 2 KRSKILIAGICSLAVLIGIVVVGWSLASKKELPKDVVAVVNGHKIYKKDLDMAYSLEELR 61
Query: 67 IS------QKIGFVVNSERARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+++ ++ A+ + ++ILD ++ L + G E
Sbjct: 62 YENAKVSFEELKKKYGADAAKELEGSLRKKTRQEILDEMIEWLVLYDEAKKEGCEVSLDE 121
Query: 115 VW-------GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
I + ++ L + ++ + + + + +
Sbjct: 122 AKAYYNKTQKMIQDVLSDKLSTGEMNNTQRAIELINSFVKKQGISEKEHEEMVIKECQML 181
Query: 168 FVGGMRPSNLLLDQAKRFYF 187
+
Sbjct: 182 LSIQKYLQEKEKQYKNKHPN 201
>gi|309379764|emb|CBX21540.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 327
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 14/174 (8%), Positives = 43/174 (24%), Gaps = 8/174 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L ++L LV+ +
Sbjct: 50 SDGIAAVADNEVITRRRLAQAVADAKANLPKDV-------QIGDEELTGQVLMQLVNQSL 102
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + A++P + ++ S +A + + +
Sbjct: 103 IVQAGKRRNIQASEAEIDAAAAQNPQLKHLSAEQRRELADSIIAEKVRQQAVMQNSRVSE 162
Query: 159 LSRTDVVGMFV-GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ G+ + R D I +
Sbjct: 163 AEVDRFIEQAQKQGITLPEGEPLRQYRAQHILIKADGENAAVGAESTIRKIYDQ 216
>gi|317130860|ref|YP_004097142.1| hypothetical protein Bcell_4184 [Bacillus cellulosilyticus DSM
2522]
gi|315475808|gb|ADU32411.1| hypothetical protein Bcell_4184 [Bacillus cellulosilyticus DSM
2522]
Length = 266
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 18/186 (9%), Positives = 57/186 (30%), Gaps = 6/186 (3%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS--VGLDKKILDNLVSGAT 98
+ +V + + F+ +Q L +G ++ E + L++ + + L++
Sbjct: 66 DVIATVNGEDIGKEDFVALLEQHLMQ-QASMGLTLDMEGSDEILAMLEEDVANQLINQRV 124
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q ++ G L + S ++ + L +G++ ++ +
Sbjct: 125 VYQKAQEEGF---DATDEEIDEELELIRMQYQIESEEMLIEILEADGVSVDDFRQDIAQY 181
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+S + + S+ + + Y + A + +
Sbjct: 182 ISGEKFLDSRIDTTTVSDEAVQEEYDEYVARVQEAIEQSGEEMDIPEIEDVRADIESYLM 241
Query: 219 KYKDNY 224
+
Sbjct: 242 NQQRQE 247
>gi|312792332|ref|YP_004025255.1| hypothetical protein Calkr_0065 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179472|gb|ADQ39642.1| hypothetical protein Calkr_0065 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 230
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 24/200 (12%), Positives = 52/200 (26%), Gaps = 19/200 (9%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K S+ +A I + + + + G S A V V K+ ++ E
Sbjct: 2 KRSKILIAGICSLAVLIGIVAVGWSLASKKELPKDVVAVVNGHKIYKKDLDMAYSLEELR 61
Query: 67 IS----------QKIGFVVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+K G V E S+ ++ILD ++ L + G E
Sbjct: 62 YENAKVSFEELKKKYGADVAKELEGSLRKKTRQEILDEMIEWLVLYDEAKKEGCEVSLDE 121
Query: 115 VW-------GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
I + ++ L + ++ + + + + +
Sbjct: 122 AKAYYNKTQKMIQDVLSGKLSTGEMNNTQRAIELINSFVKKQGISEKEHEEMVIKECQML 181
Query: 168 FVGGMRPSNLLLDQAKRFYF 187
+
Sbjct: 182 LSIQKYLQEKEKQYKNKHPN 201
>gi|307297956|ref|ZP_07577760.1| conserved hypothetical protein [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306916042|gb|EFN46425.1| conserved hypothetical protein [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 339
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 27/204 (13%), Positives = 67/204 (32%), Gaps = 12/204 (5%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K F+ L + + ++S + V + + +F++ IS++I
Sbjct: 1 MKKFIAALILLLITAVALSQTETLSETGIAAEVNGEIITMDTFLSKVLPNYTEISKRIEE 60
Query: 74 ----------VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR-- 121
+ + ++ L+ L+ L Q+ +++G+EAD + +++
Sbjct: 61 VDPLFSEMLLNTEAGQKLLEEYERNSLEALIEETLLIQYAKEVGIEADIEALREVVSKSI 120
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+ S L Y + L+ +V+ + + + ++
Sbjct: 121 MDTLTELQIEKSDADLFYVLKGYIDGLSSYEAKVVRDLAYKEVLSSLYEAVTVNATVTEE 180
Query: 182 AKRFYFENRSVDYIVLNNRHVPAI 205
Y+ S Y V R +
Sbjct: 181 EIEQYYLANSSRYAVEEERADMKV 204
>gi|153007316|ref|YP_001381641.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
gi|152030889|gb|ABS28657.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
Length = 339
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 32/299 (10%), Positives = 77/299 (25%), Gaps = 23/299 (7%)
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
K + + V K ++ R + + +
Sbjct: 19 PKKDEKKSGPVVAQGNGVTITADEFKARLDEQSPFIRARYTTLERKKEFLDNLVRFEVLA 78
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
E G + D + + LV +D++G + P ++
Sbjct: 79 REAEKRGLADDPDVQMTLKKIMVQKLVQKNFQDLEGAKNLPEPELQKYYDDHKSDYFRPK 138
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ V++ I E K + K N L +
Sbjct: 139 R-------------VRLAAVIWNAPAGSPE-RAKKLAQAKAALAKIKAEEKKNALAFNQA 184
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571
+ K+ G L + ++ F + F+ Y
Sbjct: 185 VAQYSEDAATKSAGGDLQ----FKSHEELSQAFSKELADAAFALQAGQTSGVIETPKGLY 240
Query: 572 VVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVTVHDNLIQRY 626
+ K+T + + D+ + + + ++ D + LK + ++V + ++
Sbjct: 241 -LLKLTAQQEELNRSFDQVKTQIANKLYRERKTKEFDEWLKRLKDEAKISVDEKALEAI 298
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 31/264 (11%), Positives = 64/264 (24%), Gaps = 13/264 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V + F ++ I + ++ K+ LDNLV
Sbjct: 26 SGPVVAQGNGVTITADEFKARLDEQSPFIRARY---------TTLERKKEFLDNLVRFEV 76
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR---EGINEKEYIDHY 155
L + E GL AD V + + + F L + + D++
Sbjct: 77 LAREAEKRGL-ADDPDVQMTLKKIMVQKLVQKNFQDLEGAKNLPEPELQKYYDDHKSDYF 135
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
R V P + + A+A S T+
Sbjct: 136 RPKRVRLAAVIWNAPAGSPERAKKLAQAKAALAKIKAEEKKNALAFNQAVAQYSEDAATK 195
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
E + + ++ ++ K + +
Sbjct: 196 SAGGDLQFKSHEELSQAFSKELADAAFALQAGQTSGVIETPKGLYLLKLTAQQEELNRSF 255
Query: 276 VFPNQKEADEAFQSLKKGKKFIQL 299
+ A++ ++ K + L
Sbjct: 256 DQVKTQIANKLYRERKTKEFDEWL 279
>gi|284122311|ref|ZP_06386843.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Poribacteria sp. WGA-A3]
gi|283829362|gb|EFC33756.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Poribacteria sp. WGA-A3]
Length = 186
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 51/159 (32%), Gaps = 6/159 (3%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ KE P + + K + E + ++A L+ + EG+ F + +
Sbjct: 24 IRAYYKEQQPLFTSPHAHHIRQILLLPKLGENMETLKARAEILMSQLD-EGRTFEQLAEL 82
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ + + V IE + + ++ S+ G
Sbjct: 83 FSDGSESVMGGDLGFVTKNELLPPLRDALHKISPGEVTPL-IETEIGIHILRLEESRPGV 141
Query: 584 VQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTV 618
+ +K + + ++ L + ++ LK + + +
Sbjct: 142 TEPFEKVKDAIESRLYQEKLQKSHDAWMSSLKDKAYIEI 180
>gi|42781422|ref|NP_978669.1| peptidylprolyl isomerase [Bacillus cereus ATCC 10987]
gi|42737344|gb|AAS41277.1| protein export protein prsA [Bacillus cereus ATCC 10987]
Length = 283
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 123 TEKDVKDNYKPELKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD L
Sbjct: 182 AGFAPGQTVKEFEEAAYKLDAGQV-SDPVKTTYGYHIIKVTDKKELKPFDEVKDDIRKDL 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D ++ +
Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFKKTFE 278
>gi|323706239|ref|ZP_08117806.1| PpiC-type peptidyl-prolyl cis-trans isomerase
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323534403|gb|EGB24187.1| PpiC-type peptidyl-prolyl cis-trans isomerase
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 301
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 12/262 (4%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ SF +VK I + + TK + ++ + + + I + + +
Sbjct: 40 KEYQDSFNQVKAQIESDPQYTKDIWNQNYNEQKFIDVVENSVLDNLILEKLLLKEAEKEK 99
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
K++ + A ++ + + ++K L D V++ +S +
Sbjct: 100 FTAKDKEITDEYSAEKATNSKVTKEMAKDNVLINK-----LVDSWTKNVKVTDSEALKYY 154
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ +V K AN++ + K G NF D+ K T + +
Sbjct: 155 NDNKSQFEV---VKASHILVSDEKTANEIYDKLMK-GANFADLAKQYSIDTSTKDNGGEL 210
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLT 595
+ F+ + P++ Y + K E K ISYL
Sbjct: 211 GEFTRGTMVKEFEDAAFALKPGEI-SKPVKTQYGYHIIKSEAKYTKSFDEAKSSIISYLE 269
Query: 596 QMMNKDLLDSVIAYLKSQYSVT 617
+D+ + LK +
Sbjct: 270 NNKKQDIFNQKSEALKKAAKIE 291
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 25/274 (9%), Positives = 66/274 (24%), Gaps = 9/274 (3%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN------SERARSVGLDKKIL 90
+ V V Q + + +S+ Q I + + +E+ ++ +L
Sbjct: 23 GVNKNIVAKVDGQDITLKEYQDSFNQVKAQIESDPQYTKDIWNQNYNEQKFIDVVENSVL 82
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
DNL+ L + E A + E ++K + ++ + + +
Sbjct: 83 DNLILEKLLLKEAEKEKFTAKDKEITDE---YSAEKATNSKVTKEMAKDNVLINKLVDSW 139
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ N D ++ S
Sbjct: 140 TKNVKVTDSEALKYYNDNKSQFEVVKASHILVSDEKTANEIYDKLMKGANFADLAKQYSI 199
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
T+ + + + + + + K++ KY
Sbjct: 200 DTSTKDNGGELGEFTRGTMVKEFEDAAFALKPGEISKPVKTQYGYHIIKSEAKYTKSFDE 259
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
++ + + + K E+
Sbjct: 260 AKSSIISYLENNKKQDIFNQKSEALKKAAKIEKF 293
>gi|15806083|ref|NP_294787.1| peptidyl-prolyl cis-trans isomerase C [Deinococcus radiodurans R1]
gi|6458794|gb|AAF10636.1|AE001957_4 peptidyl-prolyl cis-trans isomerase C [Deinococcus radiodurans R1]
Length = 344
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
Query: 34 LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDN 92
+ S + V VG Q + + F S++ + + G ++ + + L
Sbjct: 47 STTQSPDAVVARVGNQTLTLADFDRSFRVAVAGVVNAQGLPLSDDLLAEFASSRPEYLKQ 106
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
V L Q ++ D + ++A++ G D F
Sbjct: 107 FVREQALTQLA-RASVKPDAAAIDAQLAQARAGFGSDADFQQA 148
>gi|110636617|ref|YP_676824.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
33406]
gi|110279298|gb|ABG57484.1| possible peptidyl-prolyl cis-trans isomerase [Cytophaga
hutchinsonii ATCC 33406]
Length = 773
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 51/518 (9%), Positives = 133/518 (25%), Gaps = 21/518 (4%)
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
+++ E+ ++ +FS DV E + + +
Sbjct: 273 DQIYKELQAGTSWNELCGEFSDDVNSRSKNGELQWFSTGKMIPSFENAAFTLTTPGQYTT 332
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
+ + L + S + L + + +
Sbjct: 333 PVQTPYGWHIIKLLERKPLGSFEELEPSIRAKVTKDSRSDLNKKMLIARLKRENNFVEYT 392
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
I + V + + + I N + + + + + + F E A ++
Sbjct: 393 KGIDYAVSKADSSLLIGNWTFKESEKNKATLFTINKEKYTAEDFFAFVYENQHAVKNTSP 452
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+ ++ +G +E D L + D + V
Sbjct: 453 EVYMKNVL--YTDFVNSSIMGY--EEAHLADKFVDYKMLLKEYHDGILLFQMMEEKVWNK 508
Query: 353 VSNIKPSFTVSFQEVKKDIAN---QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
S+ +Q+ A ++ K +F ++ + E S
Sbjct: 509 ASSDTAGLRRFYQDNASKYAWGDRAHAYILSAADKTTLDKVAVDFKSVSYQVKEQSFENI 568
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ V+ AGK + + + + D A S + K
Sbjct: 569 SFEKNSASVNKAGKSQLDRAIILLRKDANYSTSIKLSRDHAENAAVSAHRKDSILAYFTK 628
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
I ++ T + + + A + ++ K +
Sbjct: 629 AGIKKERISFIDLKT---PPVRKTEAQRQADRFAE--IQLFTSSKKYLESV-------YN 676
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
+ +E + + +++ + V + E + + + ++
Sbjct: 677 AKTPLTLQVSEGMYVKNE--NELINKCSWAVGEYRFEQNNRAYLIIIDRVDAPRNKTFEE 734
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ L IA L+ +Y V+ +Q+ +
Sbjct: 735 ARGMVISDYQAYLEQQWIAELRQKYPTKVNQTEVQKLI 772
Score = 45.2 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 55/493 (11%), Positives = 136/493 (27%), Gaps = 46/493 (9%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVV--------SVGRQKVPFSSFINSWKQELG 65
I L F+ +SD + S + +V + F + +
Sbjct: 5 FWIIASALSGLFVYSCVSDKTATSSSKKSTAPAASPAILTVADDSISTEDFKYIYDK--- 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
S A S ++ +D + E +GL+ F
Sbjct: 62 -------NNGKSADAYSRQSIEEYIDLYTKFKLRVKEAESLGLDTT-----------AAF 103
Query: 126 HGKDNKFSHDVFVSRLAR---EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
+ + + L + K+ + + + + ++ P + L+
Sbjct: 104 KQELAGYQKQLAQPYLTEKGVTDMLVKQAYERMKEEIRASHILIFCNPEATPKDTLIAYN 163
Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
K R++ + DPS + E++ +Y
Sbjct: 164 KIVALRERALKGENFDQLAAQYSEDPSAKTNKGDLGYFTALSMVYEFEEAAYNTKVGSVS 223
Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN--------QKEADEAFQSLKKGK 294
+ + ++ + + + + + D+ ++ L+ G
Sbjct: 224 KPVRTKFGYHILKVVDRRPSQGQIHVAHIMARYSQGMSAEDSILAKNKIDQIYKELQAGT 283
Query: 295 KFIQLAEEQGKSLSD----ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ +L E ++ L FS + S ++ F+L G +T + +G+ I
Sbjct: 284 SWNELCGEFSDDVNSRSKNGELQWFSTGKMI-PSFENAAFTLTTPGQYTTPVQTPYGWHI 342
Query: 351 AHVSNIKP-SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ KP + + + + ++K+ + E T + + +
Sbjct: 343 IKLLERKPLGSFEELEPSIRAKVTKDSRSDLNKKMLIARLKRENNFVEYTKGIDYAVSKA 402
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
S+ + F + + I ++ F P+ V
Sbjct: 403 DSSLLIGNWTFKESEKNKATLFTINKEKYTAEDFFAFVYENQHAVKNTSPEVYMKNVLYT 462
Query: 470 ESIPARDRKLEEV 482
+ + + EE
Sbjct: 463 DFVNSSIMGYEEA 475
>gi|321313742|ref|YP_004206029.1| hypothetical protein BSn5_11930 [Bacillus subtilis BSn5]
gi|320020016|gb|ADV95002.1| hypothetical protein BSn5_11930 [Bacillus subtilis BSn5]
Length = 297
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 23/304 (7%), Positives = 78/304 (25%), Gaps = 40/304 (13%)
Query: 8 ASRTWVAKIFLVVLF--VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
SRT I +L + + S ++ ++G + V ++ + + G
Sbjct: 2 KSRTIWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGGKSVTREEWLKEMEDQYG 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE---IARS 122
K L+++++ ++Q + L+ V E I
Sbjct: 62 ---------------------KSTLEDMINVRVVEQLAKKNNLKISKSEVDREFLLIKAV 100
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
+D + + ++ + E+ + + +
Sbjct: 101 NNSFYEDEHTTEKEWKDQIRYNILLEELLTRDIDISNKELESFYHKNKELYQFDDSYRIR 160
Query: 183 KRFYFENRSVDYIVLNNRHVPAIADP-----SNAVLTQW---------FEKYKDNYRAPE 228
+ ++ + + ++ + + + E
Sbjct: 161 HIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEE 220
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
K + + + + +L+ + + + + + Q+ +
Sbjct: 221 AKTLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKATVKT 280
Query: 289 SLKK 292
K+
Sbjct: 281 LWKE 284
>gi|258542094|ref|YP_003187527.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-01]
gi|256633172|dbj|BAH99147.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-01]
gi|256636229|dbj|BAI02198.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-03]
gi|256639284|dbj|BAI05246.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-07]
gi|256642338|dbj|BAI08293.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-22]
gi|256645393|dbj|BAI11341.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-26]
gi|256648448|dbj|BAI14389.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-32]
gi|256651501|dbj|BAI17435.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654492|dbj|BAI20419.1| peptidyl-prolyl cis-trans isomerase [Acetobacter pasteurianus IFO
3283-12]
Length = 454
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 20/183 (10%), Positives = 47/183 (25%), Gaps = 10/183 (5%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
+ + + N + + G + + L +I+ L+ Q
Sbjct: 54 ILAVINSIPLTKRDVDNR----GKLFALSTGLPLTPDLMAR--LRPQIIRQLIDERLRTQ 107
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
I + ++ G I +G LA++G++ ID +
Sbjct: 108 EILSRHINVPPEQIAGAITNIERRNG----MPEGTLREHLAQDGVSLTTLIDQIRVQIGW 163
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
V+ +G + ++ + + DP + F
Sbjct: 164 IQVLRQELGARSRVSAQDIAQRQAALKREEGRTEYELAEIFVKVEDPRHDQEELDFTNTV 223
Query: 222 DNY 224
Sbjct: 224 IQE 226
>gi|229173017|ref|ZP_04300568.1| Foldase protein prsA 1 [Bacillus cereus MM3]
gi|228610350|gb|EEK67621.1| Foldase protein prsA 1 [Bacillus cereus MM3]
Length = 288
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 51/158 (32%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 128 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 186
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD+ L
Sbjct: 187 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDQIRKDL 245
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 246 EQQRLQDTTGKWKQQVVNDLLKDADIKVNDKEFKNTFE 283
>gi|329114153|ref|ZP_08242915.1| Chaperone SurA [Acetobacter pomorum DM001]
gi|326696229|gb|EGE47908.1| Chaperone SurA [Acetobacter pomorum DM001]
Length = 454
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 20/183 (10%), Positives = 47/183 (25%), Gaps = 10/183 (5%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
+ + + N + + G + + L +I+ L+ Q
Sbjct: 54 ILAVINSIPLTKRDVDNR----GKLFALSTGLPLTPDLMAR--LRPQIIRQLIDERLRTQ 107
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
I + ++ G I +G LA++G++ ID +
Sbjct: 108 EILSRHINVPPEQIAGAITNIERRNG----MPEGTLREHLAQDGVSLTTLIDQIRVQIGW 163
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
V+ +G + ++ + + DP + F
Sbjct: 164 IQVLRQELGARSRVSAQDIAQRQAALKREEGRTEYELAEIFVKVEDPRHDQEELDFTNTV 223
Query: 222 DNY 224
Sbjct: 224 IQE 226
>gi|310639535|ref|YP_003944293.1| ppic-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
polymyxa SC2]
gi|309244485|gb|ADO54052.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
polymyxa SC2]
Length = 316
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 27/267 (10%), Positives = 74/267 (27%), Gaps = 17/267 (6%)
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL-----VD 419
++ + + + L + + +++ ++
Sbjct: 43 DHTVAEMGQEGISEEQWVAELKKRYGTNTLLQMLNRKAVQAEAKRLGIKITQEDLQQVLE 102
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
K + + Q + + + V+ E ++
Sbjct: 103 QDSKGYDSEHAYFEEMQRQFGLNPVDLRNEAEYRIGLEKIATQGIQVEETEIDEYWEQHP 162
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-----TNQI 534
EE + ++ + +L+ K+G++F + + S + Q+
Sbjct: 163 EEF---AVGKQIKLAAIYVAKAEEAETLLDRVKQGESFDMLLREHSVSGNPLGEDHSGQL 219
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
+D + F + V PI Y V V + ++ +K + +
Sbjct: 220 GWLDEYDPFQPEAVMKAARELSSGDV-AGPISVNDGYAVIYVQDVRLKNSPDKQQIRQQI 278
Query: 595 TQMM---NKDLLDSVIAYLKSQYSVTV 618
+ + LD V L+ +Y +
Sbjct: 279 RRSLALAQAAPLDEVEKSLRDKYGARI 305
Score = 42.9 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 16/182 (8%), Positives = 49/182 (26%), Gaps = 31/182 (17%)
Query: 12 WVAKIFLVVLFVPFLIWGL------SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
W A I L V + + G TV +G++ + + +
Sbjct: 9 WTAVIILTVSVAALGGLIMLRGLLKPGDVSKDDGDHTVAEMGQEGISEEQW-------VA 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ ++ G L +++ + + +G++ + + +
Sbjct: 62 ELKKRYGTN--------------TLLQMLNRKAVQAEAKRLGIKITQEDLQQVLEQDSKG 107
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ ++ F + G+N + + + + + +
Sbjct: 108 YDSEH----AYFEEMQRQFGLNPVDLRNEAEYRIGLEKIATQGIQVEETEIDEYWEQHPE 163
Query: 186 YF 187
F
Sbjct: 164 EF 165
>gi|198282817|ref|YP_002219138.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665858|ref|YP_002425014.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247338|gb|ACH82931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518071|gb|ACK78657.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 258
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 16/158 (10%), Positives = 50/158 (31%), Gaps = 1/158 (0%)
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
Y+ ++ + V KK+++ + ++A++++ + K G+ F +
Sbjct: 100 EQYVKEHPIPETDIQNAYNKFVQAMGKKEFEVRHILVKTKTEADKIMGDL-KAGQKFSAL 158
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
+ + + +Q P++ Y V +V ++
Sbjct: 159 AEKYSIDKASAAHGGELGWIVPGMVVPPFAQAIETAPIDKPVGPVQTQFGYHVIEVQATR 218
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ + + ++ L+SQ + +
Sbjct: 219 ALTPPPLSAMKDRIKTQLQQQEAAKFVSNLRSQAKINI 256
>gi|283856448|ref|YP_163047.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
subsp. mobilis ZM4]
gi|283775452|gb|AAV89936.2| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
subsp. mobilis ZM4]
Length = 435
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 20/185 (10%), Positives = 47/185 (25%), Gaps = 12/185 (6%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + + L G V +IL NL+ Q
Sbjct: 37 AIVNGTIITNTDIEQRFALILASAG---GDVSRISEEDRNMARLQILRNLIDETLEIQEA 93
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + + + ++ K + + F + L G + K ++
Sbjct: 94 KANDIIITPTELDQIFEH----YARNMKKTPEAFSADLQAIGSSAKSVKRQVEADMAWRR 149
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
++ G R + + + + + A S + + K N
Sbjct: 150 LL-----GRRVEPFVNISNEEVQNIINRMKAAKGKDEYHIAEIFFSANDTNRAEVRAKAN 204
Query: 224 YRAPE 228
+
Sbjct: 205 KIQDQ 209
Score = 39.1 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 27/304 (8%), Positives = 76/304 (25%), Gaps = 14/304 (4%)
Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
+ + G + ++ N + + +I
Sbjct: 137 VKRQVEADMAWRRLLGRRVEPFVNISNEEVQNIINRMKAAKGKDEYHIAEI-FFSANDTN 195
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
+V+ ++++ + + +E + A + L
Sbjct: 196 RAEVRAKANKIQDQILQRGNTNERMGLFSAFASQYSEASSAARGGD-MGFIQAEQLPDAL 254
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT--DVKKDWKTVKTAEE 498
V S + P G + +++ + ++ + ++ +
Sbjct: 255 AAVVKNMPVGSLMGPIETPGGFSIVALLEKQQILGIDPKDAIVALKQIYVNFPPGTSQNV 314
Query: 499 VSSKANQL--VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
K +L + K + +I +GA +++ +QI+ + V
Sbjct: 315 ADEKTAKLRDATKELKGCGSVDEIAHKIGADVMSNDQISIRS-----MPPLLQNMVAKLQ 369
Query: 557 VEMVKCFPIENGLSYVVFKV---TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V V V + KV + + L + + L+
Sbjct: 370 VGESTLPFGSIQEGVSVLVVCGRDDPKVAKQPNFQQIHNQLQEDRVNKRAIRYLRDLRRD 429
Query: 614 YSVT 617
+
Sbjct: 430 AIID 433
>gi|253567247|ref|ZP_04844697.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
gi|251944078|gb|EES84597.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
Length = 517
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 41/440 (9%), Positives = 108/440 (24%), Gaps = 45/440 (10%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + Y S +K + +Y
Sbjct: 89 MENYHRALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREA 148
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
N ++ G F L + + +G + + K G+
Sbjct: 149 QNLMDSLYHVLEAHPGIDFKTLVNKYSDDKKEFWMGWLQTSQEF-----EEVAFSLKDGE 203
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
++ G I V+ + F++++ ++ +++ ++K E + + +
Sbjct: 204 YSKPFFTPKGIQIVKVTGRRE--IPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSICQ 261
Query: 398 GTSMDEISRREKIVSIDLPL-VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
T + GK GK+ + + +
Sbjct: 262 YTPDKAGMKELLASGRTSRTLFTLDGKSFTGKDFERFADAHPMGIKRQLNAFVVKSILDY 321
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVK-KDWKTVKTAEEVSSKANQLVLEYSKEGK 515
++++ P L++ D+ ++ + S + L + +
Sbjct: 322 ENN-------RLEQKYPDFRLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRT 374
Query: 516 NFRDIGKNLGASL---LTTNQINRMDNENKFFGYD----GISQVFSGPVEMVKC----FP 564
++ ++ + K + I F+ P
Sbjct: 375 DYNWDSPRYRGAVLHGTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGT 434
Query: 565 IENGLSYVVFK------------------VTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
G + V K V K + + I L + L
Sbjct: 435 FAEGDNVFVDKLVFKKGDFEPLKSYPFTVVLGEKKKGPESYHEIIPQLIRDYQNHLDALW 494
Query: 607 IAYLKSQYSVTVHDNLIQRY 626
L++ V ++ +++
Sbjct: 495 TERLRASAKVEINQEVLKTV 514
Score = 40.6 bits (92), Expect = 0.81, Method: Composition-based stats.
Identities = 58/493 (11%), Positives = 119/493 (24%), Gaps = 56/493 (11%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI + L F ++ + Q + S F +
Sbjct: 3 KILVGTLTCLF-----GAIAGHAQQDPVLMRINGQDITRSEFERFCHRNK---------- 47
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGL-EADHGRVWGEIARSPLFHGKDNKFS 133
S A L + D V + GL F + +
Sbjct: 48 -PSGIAGKETLKRCA-DLFVDMKLKLSAAQKAGLDTVSD------------FRTEMENYH 93
Query: 134 HDVFVSRL---AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+ S L A + K+ D + +V M + P L +
Sbjct: 94 RALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREAQNLMD 153
Query: 191 SVDYIVLNNRHVPAIADP---SNAVLTQWF---------EKYKDNYRAPEYKRISYILFD 238
S+ +++ + + S+ W E+ + + EY + +
Sbjct: 154 SLYHVLEAHPGIDFKTLVNKYSDDKKEFWMGWLQTSQEFEEVAFSLKDGEYSKPFFTPKG 213
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ + + + K E ++ N+ ++ + K G K
Sbjct: 214 IQIVKVTGRREIPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSICQYTPDKAGMK-EL 272
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
LA + G + AD+ K+ V+ Y + P
Sbjct: 273 LASGRTSRTLFTLDGKSFTGKDFER-FADAHPMGIKRQLNAFVVKSILDYENNRLEQKYP 331
Query: 359 SFTVSFQEVKKD---IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
F ++ Q+ + D A R ++ + + R V
Sbjct: 332 DFRLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRTDYNWDSPRYRGAVLHGT 391
Query: 416 PLVDFAGKDVKGKEVA---AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM---WVQIK 469
K++ + T A D ++ +
Sbjct: 392 HKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGTFAEGDNVFVDKLVFKKG 451
Query: 470 ESIPARDRKLEEV 482
+ P + V
Sbjct: 452 DFEPLKSYPFTVV 464
>gi|239981770|ref|ZP_04704294.1| lipoprotein [Streptomyces albus J1074]
Length = 261
Score = 50.2 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 21/216 (9%), Positives = 51/216 (23%), Gaps = 32/216 (14%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
L ++ + L A + + VG +++ + Q +G +
Sbjct: 9 LALMAATLVAAPLLTACGADARPGAAAVVGGERITVAQLEAQVGQVRDAQVAVLGEEGYA 68
Query: 78 ERARSV-----------------------------GLDKKILDNLVSGATLDQFIEDIGL 108
+ D+ L ++S + + ++ G+
Sbjct: 69 DALDQQCSAARQAELQQRDASAAQGEKVVEGRETCAPDRSTLAGMISERVVKEAADEAGI 128
Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
+ R + + + + L GI DH L + +
Sbjct: 129 SPTRKELRE---RRAQLQEQTGGTAEQLEEAYLRTYGIPAARIDDHLAYQLRLDGLRQKY 185
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
G P K + + +
Sbjct: 186 APGTSPEQADTQVRKELVRTAKGLGIDISPRYGAWD 221
>gi|300853330|ref|YP_003778314.1| putative foldase-like protein [Clostridium ljungdahlii DSM 13528]
gi|300433445|gb|ADK13212.1| putative foldase related protein [Clostridium ljungdahlii DSM
13528]
Length = 247
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 24/207 (11%), Positives = 59/207 (28%), Gaps = 9/207 (4%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
L + F + + ++ L + + ++ V + +
Sbjct: 44 LNEMVFFELAYSYAKDENLEKDDEYLKMLESAKKEILTQIAISKVMNK---VNVTDKESQ 100
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ + + + K + KA ++ + EG F + +
Sbjct: 101 DYYEANKDMYKKPERLKAKHILVDSIEKAKKI-SKEISEGMPFEEAAQKYSTCPSKAQGG 159
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
+ + + + FS + V P++ Y + KV + D+ + +
Sbjct: 160 SLGEFARGQMVPEFENAAFSLDI-DVVSEPVKTQFGYHLIKVEEKIEPSIASYDEVKNAI 218
Query: 595 T----QMMNKDLLDSVIAYLKSQYSVT 617
Q K L+S+Y V
Sbjct: 219 KNGLLQERQKYEYSKFNKELRSKYKVE 245
>gi|312135367|ref|YP_004002705.1| hypothetical protein Calow_1352 [Caldicellulosiruptor owensensis
OL]
gi|311775418|gb|ADQ04905.1| hypothetical protein Calow_1352 [Caldicellulosiruptor owensensis
OL]
Length = 236
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 19/133 (14%)
Query: 5 IRKASR-TWVAKIFLVVLFVPFLIWGLSDALF----------SVSGSSTVVSVGRQKVPF 53
IRK SR ++ + + + F SD V V +K+
Sbjct: 2 IRKKSRRNFLVIALISLSLILFSYVLASDIWTECGKKIKKIEQSKDGRIVAVVNGEKIYK 61
Query: 54 SSFINSWKQELGMI--------SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
++ E +NS + K++L+ ++ L Q +
Sbjct: 62 KDLEIAYALEEASYLYKKEFYQKLLKKEKINSIKPPVQRTKKEVLNEMIENLLLIQAAKK 121
Query: 106 IGLEADHGRVWGE 118
G
Sbjct: 122 EGYFISEKEARDY 134
>gi|325971259|ref|YP_004247450.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta sp.
Buddy]
gi|324026497|gb|ADY13256.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta sp.
Buddy]
Length = 348
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 12/162 (7%), Positives = 40/162 (24%), Gaps = 9/162 (5%)
Query: 49 QKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
+ + + + ++L+ L++ Q G+
Sbjct: 36 TPISMAELDAEVAEYQASAKAAGQDPATIDPL-------QVLNLLINNELFRQGAARDGV 88
Query: 109 EADHGRVWGEIARSPLFHGK--DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+ + A + S + F + + + Y + L +
Sbjct: 89 KITDSMIDSAYASQKANLEASYNQVISDEQFAEVITNNFGSVEAYRKMVGEQLMVDSYIR 148
Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + +A+ F ++ V +
Sbjct: 149 LKKADTLNTPVSITEAEISSFYRKNKTQFVSPETVKLSHIYI 190
>gi|255036260|ref|YP_003086881.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
fermentans DSM 18053]
gi|254949016|gb|ACT93716.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dyadobacter
fermentans DSM 18053]
Length = 774
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 26/332 (7%), Positives = 86/332 (25%), Gaps = 17/332 (5%)
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKD 370
L ++ P S + ++ + Y H+ P F E+++
Sbjct: 442 FLNYVKRKQTPRPK-DASPEVVFRRHYTDYLTESLMEYERDHLEETNPEFRSLMNEIREG 500
Query: 371 IANQMRITK-ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ + + ++ D F R + K
Sbjct: 501 VLLSQIMEEQVWQRSLSDSTGQRSFYERNKERYNYPERALATIVTAKDTQTLNSVRKSLA 560
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK-ESIPARDRKLEEVLTDVKK 488
+ + + +F + + + Y+ +Q + + ++
Sbjct: 561 TSPYKLERKSKELLFPVNSVEIGNEQLDALTDLYIIMQKNADYVVEIAGYRSADEPEITS 620
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
+ + ++++ ++ K+ +FR + + ++ ++ +
Sbjct: 621 STRVRNVVKYLNARNIPILRIIEKDYGSFRQSAEPERNRRVAFQFFSQSKSDVEKVYNAD 680
Query: 549 ISQVFSGPVE--------------MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
+ ++ V + + +
Sbjct: 681 APGAVTIREGYFPKSDPLLAGFKWQTGEQTANASGTFTWLNVAKIDPPRAKTFSEARGTV 740
Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
K+L +A L+ +Y V V+ +++
Sbjct: 741 INDYQKELEKQWLARLQEKYPVKVNAQELEKV 772
>gi|224418500|ref|ZP_03656506.1| cell binding factor 2 precursor major antigen PEB4A [Helicobacter
canadensis MIT 98-5491]
gi|253827813|ref|ZP_04870698.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313142030|ref|ZP_07804223.1| cell binding factor [Helicobacter canadensis MIT 98-5491]
gi|253511219|gb|EES89878.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313131061|gb|EFR48678.1| cell binding factor [Helicobacter canadensis MIT 98-5491]
Length = 271
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 27/263 (10%), Positives = 65/263 (24%), Gaps = 21/263 (7%)
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
F E + K + + + D++ + + + G
Sbjct: 20 FAETFAKVNGDEITEKDIAALMRAMPGVSFAQLPQEAKDQVVNQAVERKLLIAQAKKEGV 79
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
+ + A+ ++ L + K + + + +
Sbjct: 80 EKSKEFKEALESVKEDLALEVWMRQEMGKVKVSSSEIEKFYNQNKTKFVQPET------- 132
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN----FRDIGKNLGASLLTTNQINRMDN 539
VK + + A ++ + K GKN F + K N
Sbjct: 133 AKVKHILVSSEA------DAKNIIADLKKAGKNVASKFEEFAKAKSKDGSAQNGGELGWI 186
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
+ F P++ Y V V + + + Q +
Sbjct: 187 AKGQVVPEFADAAFKLNKGQYTQTPVKTQFGYHVIYVDDKRPTTTLALKDVSGQIEQNLK 246
Query: 600 ----KDLLDSVIAYLKSQYSVTV 618
++ + L+S+ V +
Sbjct: 247 LTKFQENVRKEGQDLRSKAKVEI 269
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 36/161 (22%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293
+ ++ K+++S+ E++ Y +NK K+ PE V+ ++ ++ +A LKK
Sbjct: 101 WMRQEMGKVKVSSSEIEKFYNQNKTKFVQPETAKVKHILVSSEADAKNIIADLKKAGKNV 160
Query: 294 ----KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
++F + + G + + LG +K + AD+ F L K + FGY
Sbjct: 161 ASKFEEFAKAKSKDGSAQNGGELGWIAKGQVV-PEFADAAFKLNKGQYTQTPVKTQFGYH 219
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+ +V + +P+ T++ ++V I +++TK E V+++ +
Sbjct: 220 VIYVDDKRPTTTLALKDVSGQIEQNLKLTKFQENVRKEGQD 260
>gi|307249622|ref|ZP_07531608.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858320|gb|EFM90390.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 316
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ +K Q+V + F + K L+ + ++ S
Sbjct: 190 QAKAKLAQIVADIKAGKTTFEEAAKANSVDYLSAADGGDLGYNFLDIYDPAFAKAASTAK 249
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ P ++ + + KVT ++ G E + L ++ + L+
Sbjct: 250 QEQITAPFKSQFGWHILKVTGTQQGDRTEDAYNQRAYEQLVDKQAQEAAKDWVKALRKTA 309
Query: 615 SVT 617
V
Sbjct: 310 DVQ 312
Score = 38.7 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 25/184 (13%), Positives = 55/184 (29%), Gaps = 24/184 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ AK LV L I + V V V S +
Sbjct: 2 KLISAKSLLVALVTAIGI----SQTATAIEERVVALVDGVPVMESQVQRAL--------- 48
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
++A S K L+ ++ + + +++ G++ ++ +V I +G
Sbjct: 49 -------GKKANSEANHKAALEQIIDDLLVQKAVKEAGVKVNYAKVDQVIEDIAARNGIT 101
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+ L +GI ++Y + ++ V + +G + A
Sbjct: 102 Y----GQLLDALDYQGITLEQYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLE 157
Query: 190 RSVD 193
+
Sbjct: 158 KDKA 161
>gi|291515480|emb|CBK64690.1| Parvulin-like peptidyl-prolyl isomerase [Alistipes shahii WAL 8301]
Length = 463
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 21/252 (8%), Positives = 67/252 (26%), Gaps = 11/252 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V VG + +S + + ++L ++ G+ + + + L+ L++ L
Sbjct: 23 DKVVAVVGGSSILYSEVDD-YARQLTEQRRQEGYTSDRDPM------NEALEALMTQKLL 75
Query: 100 DQFIEDIGLEADHGR----VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
+ ++ + V ++ + G + + I + Y +
Sbjct: 76 YNQAQIDSVKVNDADIMARVEEQVQQMVEAEGSIPQLEAKHHMPIFNIREIMRQRYEEQA 135
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+T+VV + + Y+ P + +
Sbjct: 136 YANSMQTEVVDKVSVIPGEVERFYKSISKDSLPLVADQYVYAQITKFPKSMTAAKQRTRE 195
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
++ + K + + + + + + + E Q+
Sbjct: 196 RLIDMRERVITGKAKFENLARMYSQDPGTMMRGGEMDPSTLEQLDPAFGAALEKMRPGQI 255
Query: 276 VFPNQKEADEAF 287
+ +
Sbjct: 256 SEVVESQFGFHI 267
>gi|32034721|ref|ZP_00134852.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126207884|ref|YP_001053109.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus
pleuropneumoniae L20]
gi|126096676|gb|ABN73504.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 316
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ +K Q+V + F + K L+ + ++ S
Sbjct: 190 QAKAKLAQIVADIKAGKTTFEEAAKANSVDYLSAADGGDLGYNFLDIYDPAFAKAASTAK 249
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ P ++ + + KVT ++ G E + L ++ + L+
Sbjct: 250 QEQITAPFKSQFGWHILKVTGTQQGDRTEDAYNQRAYEQLVDKQAQEAAKDWVKALRKTA 309
Query: 615 SVT 617
V
Sbjct: 310 DVQ 312
Score = 37.5 bits (84), Expect = 6.8, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 24/184 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ AK LV L G+S ++ V V V S +
Sbjct: 2 KLISAKSLLVALVTA---IGISQTAIAI-EERVVALVDGVPVMESQVQRAL--------- 48
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
++A S K L+ ++ + + +++ G++ ++ +V I +G
Sbjct: 49 -------GKKANSEANHKAALEQIIDDLLVQKAVKEAGVKVNYSKVDQVIEDIAARNGIT 101
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+ L +GI ++Y + ++ V + +G + A
Sbjct: 102 Y----GQLLDALDYQGITLEQYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLE 157
Query: 190 RSVD 193
+
Sbjct: 158 KDKA 161
>gi|229816170|ref|ZP_04446480.1| hypothetical protein COLINT_03217 [Collinsella intestinalis DSM
13280]
gi|229808178|gb|EEP43970.1| hypothetical protein COLINT_03217 [Collinsella intestinalis DSM
13280]
Length = 401
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 25/231 (10%), Positives = 60/231 (25%), Gaps = 19/231 (8%)
Query: 6 RKASRTWVAKIFLVVLFV--------PFLIWGLSDALFSVS----GSSTVVSVGRQKVPF 53
RK + AKI LV + + G+ + + +V +
Sbjct: 29 RKEKLSKTAKIVLVAIGILAMLLSVTAMACSGVLNEVNKEEPYELTGGVAATVNGVNIKE 88
Query: 54 SSFINSWKQELGMI---SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
+ N + S+ + ++D + L + ++ G+
Sbjct: 89 DTVTNQIMSLRTGSYDKDADWAAYLASQGLTPESYRENVIDGIARQYLLVEAEKEYGITV 148
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ K+ FV + + G + Y+++ L++ +
Sbjct: 149 SQEDLDKAWKD----AVKNYGGDEKAFVEMIEQVGFTKDTYLENIKSSLAQQKLKDEVAP 204
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+PS+ + + + A E K
Sbjct: 205 AEKPSDEEIITYLNENLSTYNGARRSSHILFKVAEDATDEQRAKVEAEAQK 255
Score = 37.1 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 25/241 (10%), Positives = 67/241 (27%), Gaps = 11/241 (4%)
Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
E+ + S +++ + K + + A ++ + + + +
Sbjct: 139 EAEKEYGITVSQEDLDKAWKDAVKNYGGDEKAFVEMIEQVGFTKDTYLENIKSSLAQQKL 198
Query: 450 LSKDHTVALPDGSYMWVQIKES--IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
+ P + + E+ R+ +L V +D + A+ V ++A +++
Sbjct: 199 KDEVAPAEKPSDEEIITYLNENLSTYNGARRSSHILFKVAEDATDEQRAK-VEAEAQKVL 257
Query: 508 LEYSKEGKNFRDIGKNL--------GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+ + F K G + + G+ QV
Sbjct: 258 DQINAGEIEFAKAAKKYSEDSSADKGGDVGWDKLTTFVPEYQDALSKLGVDQVSGLVKTT 317
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
I+ + V VT+ P + L + + + ++
Sbjct: 318 YGYHIIKCTELFEVQAVTSLDEVPEGIRTYVSDMLESQAVATAYGEWLTDYTEKAEIKIN 377
Query: 620 D 620
Sbjct: 378 P 378
>gi|254517383|ref|ZP_05129440.1| chaperone SurA [gamma proteobacterium NOR5-3]
gi|219674221|gb|EED30590.1| chaperone SurA [gamma proteobacterium NOR5-3]
Length = 412
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 43/391 (10%), Positives = 97/391 (24%), Gaps = 61/391 (15%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
S I+ + G + L ++ LD L+ Q G+
Sbjct: 28 ASELRERLATVNENIALQGGEAPPED-----VLIRETLDRLILENIQIQMGARFGVRISD 82
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG-- 170
++ +AR N + + F L +EG + E + + + V V
Sbjct: 83 AQLDQAMARI----AGQNGLTPEQFAMLLEQEGRSYGEIRQNIEREMIIQRVQQGNVNQL 138
Query: 171 ---GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+ L + I ++ A T + E + R+
Sbjct: 139 IQISEQEIENYLSTEEGQKLVQPEYRIIHALLPITSDTSETEVAQSTAYCETLVERIRSG 198
Query: 228 EYKRISYILFDVHEKEK-------------------------------KIEISNDELQAE 256
E S +
Sbjct: 199 EPFDAVMASVPPQYVFSGGDLGWRKLDDLPSLFQEVAPTLGRGETADLFQSPSGLHIVTM 258
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------FQSLKKGKKFIQLAEEQGKSL 307
++ + V ++ + + + G+ F LA E + +
Sbjct: 259 ADQRGGGDMTINQTKVRHILIEPSEILTDEQARALAVELKARAEAGEDFGDLAREYSEDI 318
Query: 308 ----SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
LG S + ++ + + + + FG+ I V + +
Sbjct: 319 GSAAEGGDLGWTSPGQMVPE--FENTMASTEINTISAPVRSQFGWHILEVLDRREKDVTE 376
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
K + + K E++ +++ +
Sbjct: 377 -DMRKAQVREFLHGRKYQEELDAWLRKIRDE 406
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 35/327 (10%), Positives = 99/327 (30%), Gaps = 7/327 (2%)
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
A + + ++ F+ + I ++ + + +S +
Sbjct: 86 DQAMARIAGQNGLTPEQFAMLLEQEGRSYGEIRQNIEREMIIQRVQQGNVNQLIQISEQE 145
Query: 358 PSFTVSFQEVKKDIANQMRITKA--SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+S +E +K + + RI A + + A ++ E R + +
Sbjct: 146 IENYLSTEEGQKLVQPEYRIIHALLPITSDTSETEVAQSTAYCETLVERIRSGEPFDAVM 205
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
V G LF+ + + V + +
Sbjct: 206 ASVPPQYVFSGGDLGWRKLDDLPSLFQEVAPTLGRGETADLFQSPSGLHIVTMADQRGGG 265
Query: 476 DRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
D + + + + + T E+ + A +L + G++F D+ + + + +
Sbjct: 266 DMTINQTKVRHILIEPSEILTDEQARALAVELKARA-EAGEDFGDLAREYSEDIGSAAEG 324
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFI 591
+ + + P+ + + + +V + + V E K +
Sbjct: 325 GDLGWTSPGQMVPEFENTMASTEINTISAPVRSQFGWHILEVLDRREKDVTEDMRKAQVR 384
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+L ++ LD+ + ++ + V +
Sbjct: 385 EFLHGRKYQEELDAWLRKIRDEAFVDI 411
>gi|218885390|ref|YP_002434711.1| hypothetical protein DvMF_0286 [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756344|gb|ACL07243.1| hypothetical protein DvMF_0286 [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 415
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 5/79 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V +V Q + + S G + E+ ++ +L +L+ +
Sbjct: 40 EGVVATVNEQPITLRTLEAVHDMSSMSWS---GHAPSVEQLQAQY--GAVLSDLIVQELV 94
Query: 100 DQFIEDIGLEADHGRVWGE 118
Q + + G V
Sbjct: 95 AQALARENIAVSDGEVAEA 113
>gi|190149693|ref|YP_001968218.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303252643|ref|ZP_07338806.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|307247402|ref|ZP_07529449.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307256445|ref|ZP_07538227.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307263001|ref|ZP_07544623.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189914824|gb|ACE61076.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302648611|gb|EFL78804.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
2 str. 4226]
gi|306856099|gb|EFM88255.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306865075|gb|EFM96976.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306871627|gb|EFN03349.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 316
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ +K Q+V + F + K L+ + ++ S
Sbjct: 190 QAKAKLAQIVADIKAGKTTFEEAAKANSVDYLSAADGGDLGYNFLDIYDPAFAKAASTAK 249
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ P ++ + + KVT ++ G E + L ++ + L+
Sbjct: 250 QEQITAPFKSQFGWHILKVTGTQQGDRTEDAYNQRAYEQLVDKQAQEAAKDWVKALRKTA 309
Query: 615 SVT 617
V
Sbjct: 310 DVQ 312
Score = 37.9 bits (85), Expect = 5.2, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 24/184 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ AK LV L G+S ++ V V V S +
Sbjct: 2 KLISAKSLLVALVTA---IGISQTAIAI-EERVVALVDGVPVMESQVQRAL--------- 48
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
++A S K L+ ++ + + +++ G++ ++ +V I +G
Sbjct: 49 -------GKKANSEANHKAALEQIIDDLLVQKAVKEAGVKVNYAKVDQVIEDIAARNGIT 101
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+ L +GI ++Y + ++ V + +G + A
Sbjct: 102 Y----GQLLDALDYQGITLEQYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLE 157
Query: 190 RSVD 193
+
Sbjct: 158 KDKA 161
>gi|104781902|ref|YP_608400.1| peptidylprolyl isomerase [Pseudomonas entomophila L48]
gi|95110889|emb|CAK15605.1| putative Peptidylprolyl isomerase [Pseudomonas entomophila L48]
Length = 318
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 17/161 (10%), Positives = 46/161 (28%), Gaps = 4/161 (2%)
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
L+ + + K E V +A L + +F + + T
Sbjct: 155 KAGLQLPARYRLSQIFLRVENPKDDEAVRKQAQALAKQAQASDADFAALAREHSQDAGTA 214
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
+ + V S P+++ Y + K+ + D+
Sbjct: 215 ANGGDTGLQALAQLLPEVRGVVSRLKAGTVSEPVQSAAGYHIVKLVEQQPARAATFDEVA 274
Query: 592 SYLTQ----MMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
L Q + + + + + ++++ + + L+
Sbjct: 275 PRLRQLLRAQRQEQVAKAYVEGMFDSATLSIDGAALNQVLE 315
>gi|120612784|ref|YP_972462.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
AAC00-1]
gi|120591248|gb|ABM34688.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
AAC00-1]
Length = 299
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 25/185 (13%), Positives = 63/185 (34%), Gaps = 11/185 (5%)
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
+ KD+ ++ + I ++ P R + E+V V+ K A+ + + + +
Sbjct: 111 VDKDNMLSDSAAEGLARNIYKAKPERFKVPEQV--QVRHILIAGKGADSRAQI--EKIEQ 166
Query: 510 YSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
K G +F + K A + + E + F+ +E+
Sbjct: 167 ELKGGADFAQLAKERSADKGSAAKGGDLGFFEAGKMVPEFDKAAFALTKPGELSGIVESK 226
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV----IAYLKSQYSVTVHDNLIQ 624
Y + ++ + D+ S L Q + ++ ++ + + + I+
Sbjct: 227 FGYHILQLEGRHAPRTRSFDEVRSELMQEVRANVQQEARVADAQAMQKEAKI--NKEAIE 284
Query: 625 RYLDG 629
+ G
Sbjct: 285 AFAAG 289
>gi|225621308|ref|YP_002722566.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brachyspira
hyodysenteriae WA1]
gi|225216128|gb|ACN84862.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brachyspira
hyodysenteriae WA1]
Length = 317
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 32/168 (19%), Positives = 67/168 (39%), Gaps = 15/168 (8%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
++V + F+ S+ LF+ +S V VG + + F++ K L + ++ IG V
Sbjct: 4 IIVFILSFIFI-QSNLLFNDVVNSIVGIVGSMPITYEDFLSR-KTFLTLQARSIGQKVTD 61
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+ + +LV + +++ + V + K + D F
Sbjct: 62 DM---------VYKDLVEERVMYLKLKENNFVIEENDVKRRLESI----AKQYNMNADQF 108
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+L EGI+ +EY + K ++ ++ G+ V S+ D+
Sbjct: 109 AKQLMAEGISYEEYKNSIKKQIAMENLYGLVVNNTEISDKEADEFYNN 156
>gi|229155916|ref|ZP_04284017.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342]
gi|228627523|gb|EEK84249.1| Foldase protein prsA 1 [Bacillus cereus ATCC 4342]
Length = 288
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 128 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 186
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 187 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 245
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q ++ V+ L + V+D + +
Sbjct: 246 EQQRLQETTGKWKQQVVNELLKDADIKVNDKEFKNAFE 283
>gi|319789892|ref|YP_004151525.1| SurA domain protein [Thermovibrio ammonificans HB-1]
gi|317114394|gb|ADU96884.1| SurA domain protein [Thermovibrio ammonificans HB-1]
Length = 282
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 23/131 (17%)
Query: 42 TVVSVGRQKVPFSSFIN-SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V Q + +S + + + + + LD L+ L
Sbjct: 25 IAAVVNGQPILYSDVVRFARENHINNLR-------------------VALDRLIEREILL 65
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
G+ + + K+ S + F L +EGI + L
Sbjct: 66 TQARSEGISVSDKELKTALLELAR---KNGFKSLEEFKKALEKEGIPFSRVEESVKDQLI 122
Query: 161 RTDVVGMFVGG 171
++ V
Sbjct: 123 VAKLIARDVRS 133
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 35/241 (14%), Positives = 80/241 (33%), Gaps = 5/241 (2%)
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
A E + + + L + +R E I D L + + ++ ++
Sbjct: 43 ARENHINNLRVALDRLIEREILLTQARSEGISVSDKELKTALLELARKNGFKSLEEFKKA 102
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
L + + + L + ++ + D +L+++ V+ +
Sbjct: 103 LEKEGIPFSRVEESVKDQLIVAKLIARDVRSKVKVSDIELDKLCLKVEGKPEREVYYIYT 162
Query: 500 SSKAN-QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF-SGPV 557
++A+ + +E G F+ + + L +T + + + +V S
Sbjct: 163 KNRADAEKAMELLANGVPFQKVARELSQDPMTAQNGGYLGYVSPGMLVKPLDRVVWSIKP 222
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ +++G Y + V K G ++K L + L I LK SV
Sbjct: 223 GSYRLVRLKDG--YYIVYVKGEKRGQC-NREKLREQLFAQRFQKALKEYIENLKRSASVK 279
Query: 618 V 618
V
Sbjct: 280 V 280
>gi|313904444|ref|ZP_07837821.1| hypothetical protein EubceDRAFT_0536 [Eubacterium cellulosolvens 6]
gi|313470780|gb|EFR66105.1| hypothetical protein EubceDRAFT_0536 [Eubacterium cellulosolvens 6]
Length = 376
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 20/314 (6%), Positives = 78/314 (24%), Gaps = 14/314 (4%)
Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
++ A+ + + + + + S +
Sbjct: 29 DGTQAALIVNGETINLGTAEFYLRYQQAQSTAMMANYGMSTESVWAQEYSGATSTSESKT 88
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL--PLVDFAGKDV 425
D + + V E + + ++ E ++ + + +D G
Sbjct: 89 YGDSLKESIRKNIVQGVILKSHAEEYDVTISDNLKEEIKKAAKETYETNKEAMDKIGTTE 148
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS--YMWVQIKESIPARDRKLEEVL 483
E Q L D + + + Y + + ++
Sbjct: 149 GDIETVLELSTYQRLMYYPMAKDVDTNVSDEEAAESTITYAKISLTKNDSETGGSETMTD 208
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
+ + + ++ + + + L S+ + Q +++
Sbjct: 209 DE------KKAAKKLLEDLLEKVKTSSDPAKADVKSLASQLDDSIEVSEQ--SFTKDSQA 260
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603
+S+ + + IE +Y + ++ + + + + +
Sbjct: 261 LPEAVLSEATALKDGELHDGIIETDDAYYIVRMDKVLDREATDSN--KKTIIEQRRETAY 318
Query: 604 DSVIAYLKSQYSVT 617
+ ++ + +
Sbjct: 319 NDLVEKWYKEAKIK 332
>gi|165975861|ref|YP_001651454.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
gi|165875962|gb|ABY69010.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
3 str. JL03]
Length = 316
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 37/123 (30%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ +K Q+V + F + K L+ + ++ S
Sbjct: 190 QAKAKLAQIVADIKAGKTTFEEAAKANSVDYLSAADGGDLGYNFLDIYDPAFAKAASTAK 249
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ P ++ + + KVT ++ G E + L ++ + L+
Sbjct: 250 QEQITAPFKSQFGWHILKVTGTQQGDRTEDAYNQRAYEQLVDKQAQEAAKDWVKALRKTA 309
Query: 615 SVT 617
V
Sbjct: 310 DVQ 312
Score = 39.1 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 24/184 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ AK LV L G+S ++ V V V S +
Sbjct: 2 KLISAKSLLVALVTA---IGISQTAIAI-EERVVALVDGVPVMESQVQRAL--------- 48
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
++A S K L+ ++ + + +++ G++ ++ +V I +G
Sbjct: 49 -------GKKANSEANHKAALEQIIDDLLVQKAVKEAGIKVNYAKVDQVIEDIAARNGIT 101
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+ L +GI ++Y + ++ V + +G + A
Sbjct: 102 Y----GQLLDALDYQGITLEQYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLE 157
Query: 190 RSVD 193
+
Sbjct: 158 KDKA 161
>gi|241761719|ref|ZP_04759806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|260752284|ref|YP_003225177.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|241374027|gb|EER63560.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|258551647|gb|ACV74593.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 471
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 20/185 (10%), Positives = 47/185 (25%), Gaps = 12/185 (6%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + + L G V +IL NL+ Q
Sbjct: 73 AIVNGTIITNTDIEQRFALILASAG---GDVSRISEEDRNMARLQILRNLIDETLEIQEA 129
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + + + ++ K + + F + L G + K ++
Sbjct: 130 KANDIIITPTELDQIFEH----YARNMKKTPEAFSADLQAIGSSAKSVKRQVEADMAWRR 185
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
++ G R + + + + + A S + + K N
Sbjct: 186 LL-----GRRVEPFVNISNEEVQNIINRMKAAKGKDEYHIAEIFFSANDTNRAEVRAKAN 240
Query: 224 YRAPE 228
+
Sbjct: 241 KIQDQ 245
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 27/304 (8%), Positives = 76/304 (25%), Gaps = 14/304 (4%)
Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
+ + G + ++ N + + +I
Sbjct: 173 VKRQVEADMAWRRLLGRRVEPFVNISNEEVQNIINRMKAAKGKDEYHIAEI-FFSANDTN 231
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
+V+ ++++ + + +E + A + L
Sbjct: 232 RAEVRAKANKIQDQILQRGNTNERMGLFSAFASQYSEASSAARGGD-MGFIQAEQLPDAL 290
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT--DVKKDWKTVKTAEE 498
V S + P G + +++ + ++ + ++ +
Sbjct: 291 AAVVKNMPVGSLMGPIETPGGFSIVALLEKQQILGIDPKDAIVALKQIYVNFPPGTSQNV 350
Query: 499 VSSKANQL--VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
K +L + K + +I +GA +++ +QI+ + V
Sbjct: 351 ADEKTAKLRDATKELKGCGSVDEIAHKIGADVMSNDQISIRS-----MPPLLQNMVAKLQ 405
Query: 557 VEMVKCFPIENGLSYVVFKV---TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V V V + KV + + L + + L+
Sbjct: 406 VGESTLPFGSIQEGVSVLVVCGRDDPKVAKQPNFQQIHNQLQEDRVNKRAIRYLRDLRRD 465
Query: 614 YSVT 617
+
Sbjct: 466 AIID 469
>gi|296313516|ref|ZP_06863457.1| SurA/PPIASE domain protein [Neisseria polysaccharea ATCC 43768]
gi|296839936|gb|EFH23874.1| SurA/PPIASE domain protein [Neisseria polysaccharea ATCC 43768]
Length = 332
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 9/131 (6%), Positives = 37/131 (28%), Gaps = 7/131 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + L +++L LV+ +
Sbjct: 55 SDGIAAVADNEVITNRRLAEAVAEAKANLPK-------DAQISESELSRQVLMQLVNQSL 107
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + ++A + +A++P ++ + +A + + +
Sbjct: 108 VVQAGKRRSIQASEAEIDAVVAQNPSLKNLSPTQRRELADNIIAEKVRQQAVMQNSRVSE 167
Query: 159 LSRTDVVGMFV 169
+
Sbjct: 168 AEIDAFLEQAQ 178
>gi|15604516|ref|NP_221034.1| hypothetical protein RP673 [Rickettsia prowazekii str. Madrid E]
gi|6226388|sp|O05951|Y673_RICPR RecName: Full=Uncharacterized protein RP673; Flags: Precursor
gi|2073481|emb|CAA72481.1| hypothetical protein [Rickettsia prowazekii]
gi|3861210|emb|CAA15110.1| unknown [Rickettsia prowazekii]
gi|292572304|gb|ADE30219.1| hypothetical protein rpr22_CDS651 [Rickettsia prowazekii Rp22]
Length = 295
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 27/196 (13%), Positives = 70/196 (35%), Gaps = 16/196 (8%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L+++ V F + S +S V SV + + + F ++ +++ +
Sbjct: 4 LLLIITVFFTF-----NVAQASLTSIVASVNDKPITLNEF---HARKKMIMALNNIENLT 55
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+++ L+ +++L+ + L Q+ D E + I NK +H
Sbjct: 56 ADQ--DKQLNDLAINSLIDESLLFQYAGDR--EIPQDEIDNAIKSIE----DRNKMAHGS 107
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ L + +N + +I L + +++ ++ SN +D A + +
Sbjct: 108 LLQYLKNKSVNPESFILQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEILMQ 167
Query: 197 LNNRHVPAIADPSNAV 212
+ + +
Sbjct: 168 VFRSKDGSNKAFTKMN 183
>gi|118477742|ref|YP_894893.1| peptidylprolyl isomerase [Bacillus thuringiensis str. Al Hakam]
gi|118416967|gb|ABK85386.1| protein export protein [Bacillus thuringiensis str. Al Hakam]
Length = 298
Score = 49.9 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 138 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 196
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVTN K + KD +
Sbjct: 197 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTNKKELKPFDEVKDSIRKDI 255
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 256 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 293
>gi|146295682|ref|YP_001179453.1| hypothetical protein Csac_0639 [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409258|gb|ABP66262.1| hypothetical protein Csac_0639 [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 236
Score = 49.9 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 24/197 (12%), Positives = 55/197 (27%), Gaps = 29/197 (14%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDA----------LFSVSGSSTVVSVGRQKVPFSS 55
+K R++ I + + + F +D + + V V +K+
Sbjct: 4 KKVKRSFSLIIVVAISLISFSKVFSADIWTECGQKIKKIQQSEDNRVVAVVNGEKIYKKD 63
Query: 56 FINSWKQELGMISQKIGF--------VVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
+ E + + + K +L++++ L Q + G
Sbjct: 64 LEIVYALEQASYLSQKESYQKLLKKYKASFLKPPVQKTKKDVLNSMIENLLLLQAAKKEG 123
Query: 108 LEADHGR-----------VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
+ I+ + KF++DV + R GI +EY
Sbjct: 124 CIVSEKEAKDYYEKTKKTIQDVISGKISGDVESVKFANDVIEKLIKRWGITREEYDKKVI 183
Query: 157 KMLSRTDVVGMFVGGMR 173
+ + +
Sbjct: 184 EQTRNMLSIQKLLNAKF 200
>gi|148653552|ref|YP_001280645.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
PRwf-1]
gi|148572636|gb|ABQ94695.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Psychrobacter sp.
PRwf-1]
Length = 460
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 35/379 (9%), Positives = 92/379 (24%), Gaps = 63/379 (16%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
S + + V + S +++ I G S + L +L++L+
Sbjct: 47 RESTNGMIALVNDTPILKSQLVSAMATAQARIQA-SGQPAPSAQ----RLQNDVLNSLIL 101
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN---------------------KFSH 134
++ G+ D V +AR G + +
Sbjct: 102 RQLQLDMVKRAGIRPDADVVNQSLARFAQSQGLTSLSQLQQTLDAKQPGSYASLRAQVIE 161
Query: 135 DVFVSRLAREGI----------NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
+ + L + + + + L + + + +
Sbjct: 162 EESLKALQQSQVANRVRITEQDIDAFLASPEAQRLQSAEYRTIHIRIPFSDDYNRITESE 221
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV----- 239
+ + + + + Y + +
Sbjct: 222 KQTALQIAQQAKNLLMNTDDAQSVLDELSAGIAKNYVAPVQGGDMGYHEASGLPTDIAKQ 281
Query: 240 -------HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
E +I ++ +K V ++ ++ +A K
Sbjct: 282 ITPLNVGQVTEPQITPEGIDVVKLVDKRNNDNMIIPQWKVRHILIKTDEQNSDALAEQKI 341
Query: 293 GKKFIQL-------------AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
+ QL + + G + L ++ + + + KGD++
Sbjct: 342 NDLYEQLRHDADFSALASTYSNDPGSAGRGGDLDWVAEGQMVPE--FEEMMKRTPKGDYS 399
Query: 340 PVIHGSFGYVIAHVSNIKP 358
FG+ I V + +
Sbjct: 400 IPFKSQFGWHILKVEDTRE 418
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 16/305 (5%), Positives = 80/305 (26%), Gaps = 5/305 (1%)
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+ + + ++ I + + ++ + I
Sbjct: 156 RAQVIEEESLKALQQSQVANRV--RITEQDIDAFLASPEAQRLQSAEYRTIHIRIPFSDD 213
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
+ +E K+ ++ + + ++ ++ G
Sbjct: 214 YNRITESEKQTALQIAQQAKNLLMNTDDAQSVLDELSAGIAKNYVAPVQGGDMGYHEASG 273
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ + + V++ + + + + + +
Sbjct: 274 LPTDIAKQITPLNVGQVTEPQITPEGIDVVKLVDKRNNDNMIIPQWKVRHILIKTDEQNS 333
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
+ ++ + + E + +F + + + +D + ++
Sbjct: 334 DALAEQKINDLYEQLRHDADFSALASTYSNDPGSAGRGGDLDWVAEGQMVPEFEEMMKRT 393
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ P ++ + + KV +++ V + ++ L Q + + + L++
Sbjct: 394 PKGDYSIPFKSQFGWHILKVEDTREKDVSDTVKRNLAREALYQRLAPQAQEDWLQELRAN 453
Query: 614 YSVTV 618
+ +
Sbjct: 454 AYIQI 458
>gi|300728336|ref|ZP_07061701.1| ppic-type ppiase domain protein [Prevotella bryantii B14]
gi|299774401|gb|EFI71028.1| ppic-type ppiase domain protein [Prevotella bryantii B14]
Length = 476
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 65/463 (14%), Positives = 136/463 (29%), Gaps = 34/463 (7%)
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ + + + VDY+ L + + +A L K+ +
Sbjct: 34 SRSEFEYSYNKNNSASVIDKKSIVDYVDLFINYKLKVKAAEDAHLDTLTSFQKEFESYRD 93
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF- 287
+ + + + + +I E Q S + ++Q E +
Sbjct: 94 QQVRPSFITEAEVEAEAHKIYESERQRIDNNGGMIRPSHILLLLKQNAPAKAAEIVKNRI 153
Query: 288 ----QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF--SLAKKGDFTPV 341
+LKKG F +LA++ G + + + KKG+ +
Sbjct: 154 DSIYNALKKGANFQELAKKYSDDKGSAVQGGLLPWIVKGQTYKEFEDVAYSMKKGEMSKP 213
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
GY I +++ S+ +K +I + E++ + +
Sbjct: 214 FSSPAGYHIILMTD--KGKFFSYDSLKNNIYRFIEQRGIREQIIDRNLDSIVKTLPEGAT 271
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
E E+ + + + Y + LL K +
Sbjct: 272 RETVLDERASDM--------SEKDSNLKYLIQEYHDGLLLYEISNRKIWEKAAKDEVGLE 323
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+Y K R A V A+ ++ S +GK F++
Sbjct: 324 NYFKRHKKSYAWDEPRFKG--------------IAYHVKDAADVSAVKKSVKGKPFQEWA 369
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
L + + I R+ E F + V V V I+ Y + + K+
Sbjct: 370 SILRKTFNNDSTI-RIRVEKGIFKKGDNAVVDKM-VFHVDTAQIKQIKDYPIDAIFGKKL 427
Query: 582 GP-VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ + S + +L I L+ +Y V V+ +++
Sbjct: 428 KKGPETYEDVKSKVISDYQDELEKVWIEALRKKYPVEVYQDIL 470
>gi|268316845|ref|YP_003290564.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
DSM 4252]
gi|262334379|gb|ACY48176.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
DSM 4252]
Length = 458
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 14/147 (9%), Positives = 34/147 (23%), Gaps = 11/147 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V VG + + S L S L + L+ L+ L
Sbjct: 28 DEIVAVVGNELILRSEVDAFLAGYLQQQR----------IPYSDELWLEALNQLIDQKVL 77
Query: 100 DQFIEDI-GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ ++ RV + + + + E + + +
Sbjct: 78 AEHARRDTTIQISDDRVEQALQERLNQLMQQVGGQTRLEEIYGKTLTQLKAELREDFREQ 137
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ + +R + +
Sbjct: 138 MLAETFRNRKLQQIRITPSEVRAWFEQ 164
>gi|149199507|ref|ZP_01876542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lentisphaera
araneosa HTCC2155]
gi|149137442|gb|EDM25860.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lentisphaera
araneosa HTCC2155]
Length = 308
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/261 (11%), Positives = 67/261 (25%), Gaps = 8/261 (3%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
LS V S + V + +E + Q R L ++
Sbjct: 12 LSSFAGRVYKVSIMAKVNGHIITSYDIQELSYREEMRLRQIFNGPELPSRIVD--LRRRA 69
Query: 90 LDNLVSGATLDQFIEDIG-LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
LD L+ + + + I +S D F L ++ +
Sbjct: 70 LDILIEEQLILDHFNSNDAYQVPSSLLEERIEKSIARRFGS---DRDKFYDMLHQKDMTV 126
Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+EY + + + + F+ + I
Sbjct: 127 EEYREEIERGIILELMRMEFIRKKIVVTPHDIALYFAENKAEFAT--PSQMHIKLIILSK 184
Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
+ + K K + + D + +++ ++ + + + E
Sbjct: 185 DKSKYDERVTKLKQELKDGKSFDELMPQSDSQFNGDLGFLKMTDIRPDFLEALKDKKAGE 244
Query: 269 IRTVEQLVFPNQKEADEAFQS 289
T+E+ + E +S
Sbjct: 245 YITIEETTQMLFVQLSEVRKS 265
>gi|226940618|ref|YP_002795692.1| signal peptide protein [Laribacter hongkongensis HLHK9]
gi|226715545|gb|ACO74683.1| Probable signal peptide protein [Laribacter hongkongensis HLHK9]
Length = 263
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 20/156 (12%), Positives = 49/156 (31%), Gaps = 6/156 (3%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEE------VSSKANQLVLEYSKEGKNFRDIG 521
+ + P D ++ +K K + ++AN ++ + K G
Sbjct: 108 LAKQNPVSDAQVRAEYDKLKSALSGQKEVQARQIIVGSEAEANAVIAQLKKGGNFEAIAK 167
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ N + + P ++ L + +FKV N +
Sbjct: 168 QKSKDPAAKQNGGDMGWGNLGVMAKPLADTLKPLGKGQYTQQPFKSDLGWHIFKVENVRD 227
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V + D+ L++ M ++ + L+ + +
Sbjct: 228 AKVPQFDEVKPQLSRQMQGAAVEKALNDLRGKAKIQ 263
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 9/118 (7%), Positives = 29/118 (24%), Gaps = 24/118 (20%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
+ F + ++ ++ V V + + ++ + +I
Sbjct: 9 ALTFALA-----TAGIAQAAPVAVVNGTAIQQNELDSAVSAIVRSGGGRIK--------D 55
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGL-----------EADHGRVWGEIARSPLFHGK 128
+ L ++ L++ + Q GL + +
Sbjct: 56 TPELRNEVKQQLINRQVILQESARRGLDKTSQFKERMDAVRDDLLQQALIDDLAKQNP 113
>gi|30262343|ref|NP_844720.1| peptidylprolyl isomerase [Bacillus anthracis str. Ames]
gi|47778036|ref|YP_018981.2| peptidylprolyl isomerase [Bacillus anthracis str. 'Ames Ancestor']
gi|30256974|gb|AAP26206.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. Ames]
gi|47551741|gb|AAT31456.2| peptidylprolyl isomerase PrsA [Bacillus anthracis str. 'Ames
Ancestor']
Length = 298
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 138 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 196
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 197 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 255
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 256 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 293
>gi|116620016|ref|YP_822172.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Solibacter usitatus Ellin6076]
gi|116223178|gb|ABJ81887.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Candidatus
Solibacter usitatus Ellin6076]
Length = 313
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 25/240 (10%), Positives = 62/240 (25%), Gaps = 16/240 (6%)
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
+ D + + + +++ + K+ + + + + +
Sbjct: 63 QQMALRDRAQWLHQWEMMRKLTKMAEQAKLDQESPYK-----EAIDYGRMNVLATAQITA 117
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
+P + Y V++K A T KK + +V
Sbjct: 118 TVNAMTVEPAEIVKSYDSNKQKYTQVKVKAIYVAFSDDAAASTTKGKKPLTEAEAKAKVE 177
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD--NENKFFGYDGISQVFSGPVE 558
L K G +F + K + + + VF+
Sbjct: 178 KLKAAL-----KGGADFVKLVKENSDDETSREKGGDFATLRYTDNIPDAFRAAVFALKKG 232
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
V P++ + + + V P+ E + + D + + V +
Sbjct: 233 DV-SEPLKQPNGFYLLRAEEVTVSPLSE---VRDDIYNQLKNDRATQWLDQVNRDSKVQI 288
>gi|304315716|ref|YP_003850861.1| PpiC-type peptidyl-prolyl cis-trans isomerase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302777218|gb|ADL67777.1| PpiC-type peptidyl-prolyl cis-trans isomerase
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 323
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 36/262 (13%), Positives = 84/262 (32%), Gaps = 12/262 (4%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ SF +VK I + + TK + ++ + + + I + + +
Sbjct: 62 KEYQDSFNQVKAQIESDPQYTKDIWNQNYNEQKFIDVVENSVLDNLILEKLLLKEAEKEK 121
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
K++ + A ++ + + ++K L D V++ +S +
Sbjct: 122 FTATDKEITDEYNAEKATNSKVTKEMAKDNVLINK-----LVDSWTKNVKVTDSEAEKYY 176
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ +V K AN++ + K G NF ++ K T + +
Sbjct: 177 NDNKSQFEV---VKASHILVSDEKTANEIYDKLQK-GANFAELAKQYSIDTSTKDNGGEL 232
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLT 595
+ + F+ + P++ Y + K + K ISYL
Sbjct: 233 GEFTRGTMVTEFENAAFALKPGEI-SKPVKTQYGYHIIKSEGKTTKSFNDVKSSIISYLE 291
Query: 596 QMMNKDLLDSVIAYLKSQYSVT 617
+++ + LK +
Sbjct: 292 NTKKQNIFNQKSEALKKAAKIE 313
Score = 41.0 bits (93), Expect = 0.58, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN------SERARSVGLDKKIL 90
+ V V Q + + +S+ Q I + + +E+ ++ +L
Sbjct: 45 GVNKNIVAKVDGQDITLKEYQDSFNQVKAQIESDPQYTKDIWNQNYNEQKFIDVVENSVL 104
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
DNL+ L + E A + E
Sbjct: 105 DNLILEKLLLKEAEKEKFTATDKEITDEYNAEKA 138
>gi|299133711|ref|ZP_07026905.1| SurA domain protein [Afipia sp. 1NLS2]
gi|298591547|gb|EFI51748.1| SurA domain protein [Afipia sp. 1NLS2]
Length = 314
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 17/131 (12%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
S + VV V + + + + +++++ L+
Sbjct: 30 SARAQAVVVMVNGEPITTYDIEQR-------------AKLIALTTHKSAPRQEVINQLID 76
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
+ + G+ + A G+ S D L +G+ +
Sbjct: 77 DRLKIKEAKKFGINMTPSEIDSSYAAM----GQRMGMSADQLSKVLMAQGVRPETMKLRM 132
Query: 156 TKMLSRTDVVG 166
+ + +V
Sbjct: 133 SADTAWGALVR 143
>gi|296272150|ref|YP_003654781.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
nitrofigilis DSM 7299]
gi|296096325|gb|ADG92275.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Arcobacter
nitrofigilis DSM 7299]
Length = 269
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 51/166 (30%), Gaps = 7/166 (4%)
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS---KEGKN 516
Y V+ ++ + + + +AN ++ + + + +
Sbjct: 103 QNEYAKVKATDAEEKSFYDKNKEKFKTPDTLEASHILVKTEKEANDIIAKLNIAKNKKGS 162
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
F ++ K T + K + + P++ Y V +
Sbjct: 163 FEELAKKFSIGPTKTKGGYLGKFQAKQMVPEFSKAALALKKGEYTKKPVKTQFGYHVIYL 222
Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY----LKSQYSVTV 618
N +V + DK + + +M+ ++ +I LK + +
Sbjct: 223 ENKEVSQILPFDKVKANIAKMIVQEKYGKMIKEEVEKLKKDAKIII 268
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 23/265 (8%), Positives = 68/265 (25%), Gaps = 18/265 (6%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ F + ++S + T SV + V + +
Sbjct: 8 IVTAFALT-----ATTLSAAETFASVNGEDVTSQDVAQLLRGQNVQFENLPKET------ 56
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
K++ L+ L Q G+E + +++ + + + +
Sbjct: 57 -----KDKVISQLIEKKLLTQKAVKSGIE-KEEKYKDALSKIKEDLALEL-WMQNEYAKV 109
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
A + + Y + K + + + AK +N+ + L +
Sbjct: 110 KATDAEEKSFYDKNKEKFKTPDTLEASHILVKTEKEANDIIAKLNIAKNKKGSFEELAKK 169
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
L ++ K + + + + + L+ +
Sbjct: 170 FSIGPTKTKGGYLGKFQAKQMVPEFSKAALALKKGEYTKKPVKTQFGYHVIYLENKEVSQ 229
Query: 261 KEKYFSPEIRTVEQLVFPNQKEADE 285
+ + + +V + +
Sbjct: 230 ILPFDKVKANIAKMIVQEKYGKMIK 254
>gi|110635342|ref|YP_675550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Mesorhizobium sp.
BNC1]
gi|110286326|gb|ABG64385.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chelativorans sp.
BNC1]
Length = 351
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 32/179 (17%), Positives = 70/179 (39%), Gaps = 4/179 (2%)
Query: 224 YRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEA 283
R E+ R + + I+++EL A YE+ K E ++ +++EA
Sbjct: 138 QRRTEFLRQRALHSAYIDANVVKPITDEELNARYEEEVAKIPQQEEVHARHILVDSEEEA 197
Query: 284 DEAFQSLKKGKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
L +G F ++A+E+ K + LG F++ + + + F++
Sbjct: 198 KNIITQLDEGGDFAEIAKEKSKDGAAANGGDLGYFTEGAMV-PEFSKAAFAMEPGAHSEE 256
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
+ FG+ + V + + + ++VK I + + K E + + E +
Sbjct: 257 PVKTQFGWHVIKVEDKRMQPPPALEQVKDQIRSMVIRDKYMETLVSLRENAELDIPNAD 315
Score = 40.6 bits (92), Expect = 0.84, Method: Composition-based stats.
Identities = 6/74 (8%), Positives = 20/74 (27%), Gaps = 10/74 (13%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V ++ Q++ + + + + G + L ++
Sbjct: 73 SPVVATINGQQITEADLALA----QEELGPQFG------QMPEDQRRAAALSAVIDVRLF 122
Query: 100 DQFIEDIGLEADHG 113
+ G++
Sbjct: 123 ASEAQKEGIDKTDE 136
>gi|295704136|ref|YP_003597211.1| foldase protein PrsA [Bacillus megaterium DSM 319]
gi|294801795|gb|ADF38861.1| foldase protein PrsA [Bacillus megaterium DSM 319]
Length = 291
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 6/124 (4%)
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPV 557
K + V +G++F + K + + + + +Q FS V
Sbjct: 164 ADEKTAKEVKAKLDKGEDFAKLAKEYSTDTASKSNGGDLGYFKKGDMVEAFANQAFSMKV 223
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS----VIAYLKSQ 613
V P++ Y + KVT K + + + Q + + + LK +
Sbjct: 224 NEV-SDPVKTEYGYHIIKVTGKKEAQKATYENSKAKIKQTLLDQKYQTEYPTWLQKLKKK 282
Query: 614 YSVT 617
Y +T
Sbjct: 283 YDIT 286
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 11/98 (11%), Positives = 32/98 (32%), Gaps = 21/98 (21%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ S V +VG +K+ ++ + + G +LD+L+
Sbjct: 27 NKSKVVATVGDEKITKDQLYDA-------LLAQGGS--------------SVLDSLIEQK 65
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ + ++ + E+ +G ++ +
Sbjct: 66 VISKEAAKQNIKVTDKEINAELENLKSQYGGEDALNQA 103
>gi|89100502|ref|ZP_01173363.1| YacD [Bacillus sp. NRRL B-14911]
gi|89084768|gb|EAR63908.1| YacD [Bacillus sp. NRRL B-14911]
Length = 296
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 20/199 (10%), Positives = 56/199 (28%), Gaps = 23/199 (11%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
++K + V+ + L+ + A+ TV VG+ K+ + L
Sbjct: 1 MKKKHLWLIIASLFVLNIIFILLLTIRPAVLFAGSGETVAEVGKDKITREEW-------L 53
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ Q+ G K++L++L+ + E +E V E+
Sbjct: 54 NEMEQRYG--------------KEVLNDLIDQKVIGAMAEKYDVEVSKDAVERELTLVKT 99
Query: 125 FHGKD--NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
+ + + + ++ + E+ + +
Sbjct: 100 MYQGNRLQQLDESKWKEQIKYSLLLEELLTRDVVVTEEEMKDYYDQNKSLFQVPDSYHIS 159
Query: 183 KRFYFENRSVDYIVLNNRH 201
+ + + + +
Sbjct: 160 QIVVKTKKEAEQTIKELEN 178
>gi|262164102|ref|ZP_06031841.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus VM223]
gi|262027630|gb|EEY46296.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio mimicus VM223]
Length = 388
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ + +++ + E L +++L+ L+ Q E IG++ D R+ I
Sbjct: 6 KTVKANAKQNNQPLPQETV----LREQVLEKLIIDTLQQQEAERIGVKIDDNRLNDAIKE 61
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
K N+ + + +S +A+EG+ E+ + K +
Sbjct: 62 I----AKSNQQTQEQLISSVAQEGLTYPEFREQVRKEM 95
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 29/261 (11%), Positives = 71/261 (27%), Gaps = 6/261 (2%)
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG 422
+ D Q +I+ +V+E + E + E+ +
Sbjct: 121 ELLAQETDATVQYKISHIQLRVEEGQDKSEAESLANKLVGELKHGADFAQMAYTYSKGPK 180
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV 482
G + +F K + ++I + + EV
Sbjct: 181 ALQGGDWGWMRKEEMPTIFADQIKMQNKGSVIGPFRSGVGFHILKIDDVKGLETVAVTEV 240
Query: 483 LTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
+ + + E + N+ V F ++ + + Q + +
Sbjct: 241 NARHILIKPTIILSDEGAQKQLNEFVQRIKNGEATFGELAQQYSQDPGSAAQKGELGYQT 300
Query: 542 KFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQM 597
+ Q+ + PV + P + + + +V + K+K L
Sbjct: 301 PDLYVPEFKHQIETLPVGQI-SEPFQTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNR 359
Query: 598 MNKDLLDSVIAYLKSQYSVTV 618
+ + + L++ V V
Sbjct: 360 KFNEEASAWLQELRASAFVEV 380
>gi|229096816|ref|ZP_04227786.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29]
gi|228686658|gb|EEL40566.1| Foldase protein prsA 1 [Bacillus cereus Rock3-29]
Length = 293
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 39/244 (15%), Positives = 77/244 (31%), Gaps = 18/244 (7%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
KE K L++ T + + + + + + + K+ +KE L
Sbjct: 49 KELSKELKQKYGESTLYQMVLSKALLDKYKVSDEEATKQVKEAKDKMGDNFKETLEKLGL 108
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+D L + + + + E ++V + K + K + A
Sbjct: 109 KNEDELKEKMKPEIAFEKAIKATVTE---------KDVKDNYKPEMKVSHILVKDEKTAK 159
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCF 563
+ V E G++F + K + Q + + + V
Sbjct: 160 E-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKLNAGQV-SE 217
Query: 564 PIENGLSYVVFKVTNSKV--GPVQEKDKFISYLTQMMNKDLL----DSVIAYLKSQYSVT 617
P++ Y + KVT+ K + KDK L Q +D V+ L +
Sbjct: 218 PVKTSYGYHIIKVTDKKELKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIK 277
Query: 618 VHDN 621
V+D
Sbjct: 278 VNDK 281
>gi|153854234|ref|ZP_01995542.1| hypothetical protein DORLON_01534 [Dorea longicatena DSM 13814]
gi|149753283|gb|EDM63214.1| hypothetical protein DORLON_01534 [Dorea longicatena DSM 13814]
Length = 245
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 50/156 (32%), Gaps = 5/156 (3%)
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ V + + + + + K +L+ + K F D+ K
Sbjct: 89 FATVNVTDDEIKEYYEANKSKYSKGASVHAKHILVDNEEKCTELLNAITSGEKVFEDVAK 148
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
N + + + F+ V V P++ Y + KV + K
Sbjct: 149 ESSTCPSGANGGDLGEFGRGQMVKEFEDAAFAAEVGHV-VGPVKTQFGYHLIKVEDKKEA 207
Query: 583 PV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ KD+ + L+Q ++ + + LK +Y
Sbjct: 208 GESSLEEVKDQIRAELSQKKQEEAYRAKVDELKKKY 243
>gi|56461330|ref|YP_156611.1| parvulin-like peptidyl-prolyl isomerase [Idiomarina loihiensis
L2TR]
gi|81678272|sp|Q5QVN9|SURA_IDILO RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|56180340|gb|AAV83062.1| Periplasmic parvulin-like peptidyl-prolyl isomerase (two homologous
domains) [Idiomarina loihiensis L2TR]
Length = 432
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 60 WKQELGMISQK--IGFVVNSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ ++ + Q+ G NS A S + + + ++ L+ Q +G+E D ++
Sbjct: 43 LQSQIDQLIQQVKNGQNFNSSNAPSDEVLETQAIERLILQEIQLQMANRMGIEIDDNQLE 102
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
I + + G++ Y ++ L
Sbjct: 103 QAINEIANNQD----LTTAELRENMVSSGMSWAAYRENIRNEL 141
>gi|27597140|dbj|BAC55134.1| EpsD [Methylobacillus sp. 12S]
Length = 234
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
T++ K V + V G S+ S V +++ + K
Sbjct: 2 TFMKKAVFVAMVVALAACGKSEE--KSSSGQVAAIVDGKEISVLQLNQAMKNM------- 52
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
V ++ A + + K++LD LV + + +E +
Sbjct: 53 --PNVTADNADA--VRKQLLDRLVDQQVVLNKALEEKVERSAEVI 93
>gi|304405097|ref|ZP_07386757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
curdlanolyticus YK9]
gi|304345976|gb|EFM11810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
curdlanolyticus YK9]
Length = 365
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 16/156 (10%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + L V ++ G + V SV + ++ G
Sbjct: 36 SGALGWVVSAALLVILILVATLSYAGDDKGEN-VASVNGVAITEKQLYDALLLIKG---- 90
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + + LD+L++ ++Q ++ GL + E+ K
Sbjct: 91 -------GGQNGQQKMSEVTLDDLINVELMNQELQKQGLVVAEADIDKELDALK----KA 139
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
+ LA+ G+ + K ++
Sbjct: 140 YGLDDEKLKQTLAQSGMTVADLRPDLEKQAKLRKLL 175
>gi|255528699|ref|ZP_05395439.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
carboxidivorans P7]
gi|296188773|ref|ZP_06857156.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Clostridium
carboxidivorans P7]
gi|255507609|gb|EET84109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
carboxidivorans P7]
gi|296046636|gb|EFG86087.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Clostridium
carboxidivorans P7]
Length = 248
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 5/114 (4%)
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
G F D K + N + F+ + + P++
Sbjct: 136 INAGTTFEDAAKKYSSCPSKEQGGNLGKFGRGQMVPEFEEAAFALEIGTL-SAPVKTQFG 194
Query: 571 YVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
Y + KV + G + K+ + L Q + L+ +Y V +++
Sbjct: 195 YHLIKVEDKSKGAVKSFEEVKNSIKNKLLQERQSFKYTQLNKELRQKYDVQINN 248
>gi|291482444|dbj|BAI83519.1| hypothetical protein BSNT_00126 [Bacillus subtilis subsp. natto
BEST195]
Length = 297
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 23/304 (7%), Positives = 78/304 (25%), Gaps = 40/304 (13%)
Query: 8 ASRTWVAKIFLVVLF--VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
SRT I +L + + S ++ ++G + V ++ + + G
Sbjct: 2 KSRTIWTIILGALLVCCIAVAYTLTKSQTGASSSGESIATIGGKSVTREEWLKEMEDQYG 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE---IARS 122
K L+++++ ++Q + L+ V E I
Sbjct: 62 ---------------------KSTLEDMINVRVVEQLAKKNNLKISKSEVDREFLLIKAV 100
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
+D + + ++ + E+ + + +
Sbjct: 101 NNSFYEDEHTTEKEWKDQIRYNILLEELLTRDIDISNKELESFYNKNKELYQFDDSYRIR 160
Query: 183 KRFYFENRSVDYIVLNNRHVPAIADP-----SNAVLTQW---------FEKYKDNYRAPE 228
+ ++ + + ++ + + + E
Sbjct: 161 HIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEE 220
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
K + + + + +L+ + + + + + Q+ +
Sbjct: 221 AKTLKEDEWSQEPIKVNNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKATVKT 280
Query: 289 SLKK 292
K+
Sbjct: 281 LWKE 284
>gi|227499517|ref|ZP_03929624.1| possible peptidylprolyl isomerase PrsA [Anaerococcus tetradius ATCC
35098]
gi|227218396|gb|EEI83647.1| possible peptidylprolyl isomerase PrsA [Anaerococcus tetradius ATCC
35098]
Length = 360
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 17/154 (11%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
TV V QK+ + + M++ + L I+ +V
Sbjct: 45 DDKTVAIVDGQKISKDDYKSEMSFYASMLASQ------------QQLKNSIVTMMVQDKL 92
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ I+ ++ D V + +S G +F L ++ K++ + K
Sbjct: 93 IANDIKKNNIKIDDKDVDNALMQSVQNFGGQEQFDK-----TLDDYNMDIKKFKETLKKD 147
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
L F + S+ + + + +
Sbjct: 148 LMYKKHREWFDENNKVSDDEIKKYFEENKDQFTK 181
>gi|325981462|ref|YP_004293864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
AL212]
gi|325530981|gb|ADZ25702.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosomonas sp.
AL212]
Length = 264
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 47/131 (35%), Gaps = 2/131 (1%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGY 546
K++K E ++A ++ K G NF I + + ++ + +
Sbjct: 135 KEYKARHILVENENEARDIIASLKKGG-NFAKIAEEKSIDDGSKENGGELNWSPPAAYVR 193
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ + P++ + V ++ + + V ++ + Q + + +V
Sbjct: 194 PFSEALVKLSKGGMTEQPVQTSFGWHVIQLMDIRPMEVPPFEEVKQNIQQRVLQREFATV 253
Query: 607 IAYLKSQYSVT 617
+ L+S+ V
Sbjct: 254 VQDLRSKAKVE 264
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 13/98 (13%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
V+ + +WGL S V V +P S K + Q
Sbjct: 9 VMIIS--VWGLIAFSVQAQSSGVVAKVNGVAIPQSRLELMVKANVAQGQQ---------- 56
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ K + +NL++ L Q L+ D +
Sbjct: 57 -DGPEMRKALRENLIAEEILAQEATKKRLDQDPEVIAQ 93
>gi|242309441|ref|ZP_04808596.1| cell-binding factor 2 [Helicobacter pullorum MIT 98-5489]
gi|239524012|gb|EEQ63878.1| cell-binding factor 2 [Helicobacter pullorum MIT 98-5489]
Length = 272
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 45/161 (27%), Gaps = 8/161 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN----FRDIG 521
V++ +S + + + K ++A ++ + + GKN F ++
Sbjct: 109 VRVSDSEIEKFYNDNKTKFVQPEVAKVRHILVNSETEAKNIISDVKRAGKNSLAKFEELA 168
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
K+ N + + F P++ Y V V + K
Sbjct: 169 KSKSKDGSAQNGGDVGWIARGQVVPEFADAAFKLNKGQYTQTPVKTQFGYHVIYVEDKKP 228
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVI----AYLKSQYSVTV 618
+ Q + + L+ + V +
Sbjct: 229 TTTLALKDVKGQIEQNLRLMKFQENVKKEGQELRKKAKVEI 269
Score = 38.7 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 9/161 (5%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG---- 293
+ ++ +K+ +S+ E++ Y NK K+ PE+ V ++ ++ EA +K+
Sbjct: 101 WMRQEMEKVRVSDSEIEKFYNDNKTKFVQPEVAKVRHILVNSETEAKNIISDVKRAGKNS 160
Query: 294 -KKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
KF +LA+ + K + +G ++ + AD+ F L K + FGY
Sbjct: 161 LAKFEELAKSKSKDGSAQNGGDVGWIARGQVV-PEFADAAFKLNKGQYTQTPVKTQFGYH 219
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+ +V + KP+ T++ ++VK I +R+ K E VK++ +
Sbjct: 220 VIYVEDKKPTTTLALKDVKGQIEQNLRLMKFQENVKKEGQE 260
>gi|294498814|ref|YP_003562514.1| foldase protein PrsA [Bacillus megaterium QM B1551]
gi|294348751|gb|ADE69080.1| foldase protein PrsA [Bacillus megaterium QM B1551]
Length = 291
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 6/124 (4%)
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPV 557
K + V +G++F + K + + + + ++ FS V
Sbjct: 164 ADEKTAKEVKAKLDKGEDFAKLAKEYSTDTASKSNGGDLGYFKKGDMVEAFANKAFSMKV 223
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS----VIAYLKSQ 613
V P++ Y + KVT K + + + Q + + + LK +
Sbjct: 224 NEV-SDPVKTEYGYHIIKVTGKKEAQKATYENSKAKIKQTLLDQKYQTEYPTWLQKLKKK 282
Query: 614 YSVT 617
Y +T
Sbjct: 283 YDIT 286
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 11/98 (11%), Positives = 32/98 (32%), Gaps = 21/98 (21%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ S V +VG +K+ ++ + + G +LD+L+
Sbjct: 27 NKSKVVATVGDEKITKDQLYDA-------LLAQGGS--------------SVLDSLIEQK 65
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ + ++ + E+ +G ++ +
Sbjct: 66 VISKEAAKQNIKVTDKEINAELENLKSQYGGEDALNQA 103
>gi|90423813|ref|YP_532183.1| hypothetical protein RPC_2310 [Rhodopseudomonas palustris BisB18]
gi|90105827|gb|ABD87864.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
Length = 320
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 36/128 (28%), Gaps = 17/128 (13%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
S V V + + + + ++++D L++
Sbjct: 42 AQSVAVMVNGEPITNYDIEQR-------------SKLMALSTHKSPSRQQVIDELINEKV 88
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ + G++ + G A G + S + L +GI +
Sbjct: 89 KIREGKKFGIDPSVADIDGSFAGM----GSRMRMSAEQLTKSLEGQGIRPETLKQRMRAE 144
Query: 159 LSRTDVVG 166
+ T +V
Sbjct: 145 MVWTSLVR 152
>gi|311029962|ref|ZP_07708052.1| hypothetical protein Bm3-1_05291 [Bacillus sp. m3-13]
Length = 252
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 20/185 (10%), Positives = 50/185 (27%), Gaps = 6/185 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V Q++ + +Q M+ Q + + + + L+ L+ L
Sbjct: 55 EKVVAKVNGQEIKGQEYNEMLQQTQMMMMQF------GQGGDAKAMKDQTLNALIDQKVL 108
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q +E G + + I + + KF + S L E + + + +
Sbjct: 109 SQEVESKGYKTSEKEIEDYIKDIKANYESEEKFEEALEESPLTMETLKAQISEELALQKY 168
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ V + ++ + + + E+
Sbjct: 169 MEKEFPETKVTDEQIKEYYNQAKEQNEAQQAEAPEGEEAPANEFPELAEVEDQIRGQLEQ 228
Query: 220 YKDNY 224
+
Sbjct: 229 EETQK 233
>gi|284989497|ref|YP_003408051.1| hypothetical protein Gobs_0918 [Geodermatophilus obscurus DSM
43160]
gi|284062742|gb|ADB73680.1| hypothetical protein Gobs_0918 [Geodermatophilus obscurus DSM
43160]
Length = 343
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 18/156 (11%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+R A + + ++ + G++ S VG ++V + L
Sbjct: 16 TRRLTASLAVGLVALA----GVAGC---RSDPGVAAYVGDERVTVGELRTAVDTRLED-- 66
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
+ + R + +L LV D+F + G+ D G V +
Sbjct: 67 ---PALAEAAAGREDEFTRLVLRRLVEAELYDRFAQRYGVTVDDGDVRARLDELLAGE-- 121
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+ ++ A +G+ + + + + R V
Sbjct: 122 ----DPEAVYAQAASQGVARADVFETVRQQVLRQRV 153
>gi|259419301|ref|ZP_05743218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Silicibacter sp.
TrichCH4B]
gi|259345523|gb|EEW57377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Silicibacter sp.
TrichCH4B]
Length = 425
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 17/148 (11%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
L + + + + + S V++V + + L ++ G +
Sbjct: 25 GGLALAVALTLPAADVGAQGLFSPVITVNEDVITTYELQQR-ARFLTVLGSVQGDPL--- 80
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
+ ++L+ Q + ++GL + + + S + F+
Sbjct: 81 --------ETARNDLIEDRLKRQVMREVGLTLSEDEITEGMREL----AQRANLSLEEFL 128
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVG 166
S L + G++ + D + L + +
Sbjct: 129 SGLRQAGVDPETVRDFTSAGLGWREYIR 156
>gi|153814526|ref|ZP_01967194.1| hypothetical protein RUMTOR_00740 [Ruminococcus torques ATCC 27756]
gi|317500569|ref|ZP_07958790.1| hypothetical protein HMPREF1026_00733 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089331|ref|ZP_08338232.1| hypothetical protein HMPREF1025_01815 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145848020|gb|EDK24938.1| hypothetical protein RUMTOR_00740 [Ruminococcus torques ATCC 27756]
gi|316898002|gb|EFV20052.1| hypothetical protein HMPREF1026_00733 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330405512|gb|EGG85044.1| hypothetical protein HMPREF1025_01815 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 356
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 32/248 (12%), Positives = 83/248 (33%), Gaps = 14/248 (5%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ + + + +A E + + E+ + T ++ + ++ D D + + V G
Sbjct: 86 EESVKDSVMEAVENMYLISQHSGEYEVVLTEDEKEAIQKAAEQFDKDNKDESKEAVSGYR 145
Query: 430 VAAIPYKE-QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
Y E + + + V+ + Q + V +
Sbjct: 146 KDIEKYLELMTIQSKMSEKMREGVNEEVSDEE----AAQKSMEYVYFSYTSTDESGSVTE 201
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
K + ++ + + E +K G++F + LG + T D ++
Sbjct: 202 LTDEEKAKAKSTA---ETIAERAKAGEDFAAVAAELGTEVQKTA----FDAKSTSPDAAL 254
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
I + E IE+ V K+T + + D+ + + + ++ DS++
Sbjct: 255 IEAANALAAEGDVTGAIESDAGVYVAKLT--SLLDREATDQKKASIIEERKQEQYDSLLK 312
Query: 609 YLKSQYSV 616
+ + +
Sbjct: 313 KWRKETDI 320
>gi|134094865|ref|YP_001099940.1| putative peptidyl-prolyl cis-trans isomerase (NifM related)
[Herminiimonas arsenicoxydans]
gi|133738768|emb|CAL61815.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
[Herminiimonas arsenicoxydans]
Length = 248
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 17/151 (11%), Positives = 40/151 (26%), Gaps = 5/151 (3%)
Query: 472 IPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
P R E V + E + ++ E + F ++ +
Sbjct: 85 QPQRFTSGELVEARHILFQVTPSVPLELLRETGEAVLAELRVHPERFAELAREYSNCASG 144
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
T N + + VF P + +E + +V G V +
Sbjct: 145 TVGGNLGQLTRGQTVPEFEALVFRLPEGELADRLLETRFGLHIVQVLRRVAGEVVPLEAV 204
Query: 591 ISYLTQMMNKDLLD----SVIAYLKSQYSVT 617
+ + +++ + L + +
Sbjct: 205 KAQIADHLSRQAWQRAVHQYLQILVGRADIQ 235
>gi|51473852|ref|YP_067609.1| hypothetical protein RT0667 [Rickettsia typhi str. Wilmington]
gi|81389996|sp|Q68W65|Y667_RICTY RecName: Full=Uncharacterized protein RT0667; Flags: Precursor
gi|51460164|gb|AAU04127.1| rickettsial conserved hypothetical protein [Rickettsia typhi str.
Wilmington]
Length = 295
Score = 49.5 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 26/195 (13%), Positives = 69/195 (35%), Gaps = 15/195 (7%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
L+++ F + ++ A + V SV + + F+ F ++ ++ + S
Sbjct: 4 LLLIITVFSTFNVAQASLTS----IVASVNDKPITFNEF---HARKKMIMVLNNVENLTS 56
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
++ L +++L+ + L Q+ D ++ + I NK H
Sbjct: 57 DQ--DKQLSDLAINSLIDESLLFQYAGDREIQ--QDEIDNAIKSIE----DRNKMPHGSL 108
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ L + +N + +I L + +++ ++ SN +D A + + +
Sbjct: 109 LQYLKNKSVNPESFIFQIKSELIKMNILSSLSRSVQVSNKEIDVAILSSDQKDVEILMQV 168
Query: 198 NNRHVPAIADPSNAV 212
+ +
Sbjct: 169 FRSKDGSNKAFTKMN 183
>gi|331694754|ref|YP_004330993.1| hypothetical protein Psed_0886 [Pseudonocardia dioxanivorans
CB1190]
gi|326949443|gb|AEA23140.1| hypothetical protein Psed_0886 [Pseudonocardia dioxanivorans
CB1190]
Length = 315
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 34/124 (27%), Gaps = 11/124 (8%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM--- 66
R+ V + V + ++ G V V VG + ++ L
Sbjct: 2 RSRVIRAIAVTSILGAVVAGCGSGPSQVGS---AVIVGDSAARLADVDSTLDTLLANPKF 58
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+Q V + + + ++ +L+ GL + IA
Sbjct: 59 SAQLTKAGVTPDMVTREIVGRAVIHDLIR-----AEAAATGLSVSDAEIDQTIAADDRTT 113
Query: 127 GKDN 130
+
Sbjct: 114 DDNQ 117
>gi|18309250|ref|NP_561184.1| hypothetical protein CPE0268 [Clostridium perfringens str. 13]
gi|110800910|ref|YP_694723.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens ATCC 13124]
gi|168207845|ref|ZP_02633850.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens E str. JGS1987]
gi|168211827|ref|ZP_02637452.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens B str. ATCC 3626]
gi|168215167|ref|ZP_02640792.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens CPE str. F4969]
gi|168218257|ref|ZP_02643882.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens NCTC 8239]
gi|169344703|ref|ZP_02865666.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens C str. JGS1495]
gi|18143926|dbj|BAB79974.1| hypothetical protein [Clostridium perfringens str. 13]
gi|110675557|gb|ABG84544.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens ATCC 13124]
gi|169297170|gb|EDS79284.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens C str. JGS1495]
gi|170660843|gb|EDT13526.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens E str. JGS1987]
gi|170710226|gb|EDT22408.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens B str. ATCC 3626]
gi|170713436|gb|EDT25618.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens CPE str. F4969]
gi|182379724|gb|EDT77203.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens NCTC 8239]
Length = 248
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 45/157 (28%), Gaps = 5/157 (3%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V + + + + + +A ++ E + F D
Sbjct: 92 VTVTDDEAKAFYEEHKENFVELETVTAKHILVASEEEAKKVEEEIASGSITFEDAANKYS 151
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-- 583
+ N + F+ + V P++ Y + KV +
Sbjct: 152 SCPSKEQGGNLGSFSKGMMVPEFEEAAFNLELG-VVSAPVKTQFGYHLIKVEDKTEAKTK 210
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K++ ++ L Q + +I L+ +Y V +
Sbjct: 211 AFEDVKEQVVNMLIQERQQKKYLELIKELREKYGVKL 247
>gi|121594044|ref|YP_985940.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
gi|120606124|gb|ABM41864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax sp. JS42]
Length = 261
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 50/137 (36%), Gaps = 2/137 (1%)
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NE 540
V + K++K E +A ++ K GK F DI K + + +D
Sbjct: 126 VAANAGKEYKASHILVEKEDEAKAIIASIKKGGK-FEDIAKKQSKDPGSGTRGGDLDWAS 184
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
+ + + + P+++ + V ++ + + + + ++ + Q + +
Sbjct: 185 PSSYVAEFTEALVKLEKGKMTQTPVKSQFGWHVIRLDDVREAQLPKLEEVKPQIAQQLQQ 244
Query: 601 DLLDSVIAYLKSQYSVT 617
L L+++ V
Sbjct: 245 QKLAKFQEDLRAKAKVE 261
>gi|149181601|ref|ZP_01860095.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
gi|148850715|gb|EDL64871.1| post-translocation molecular chaperone [Bacillus sp. SG-1]
Length = 313
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 29/288 (10%), Positives = 76/288 (26%), Gaps = 36/288 (12%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+ + ++ F+ S V VG+ +
Sbjct: 39 VVVCLIITGFVF----------SKDEVVAKVGKDSISKDELYTML--------------- 73
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ LD L++ ++ ++ ++ G + E+ + +G +
Sbjct: 74 ------VDQYGEAALDTLIADKIVELESDEQKIKVTDGEIEEELHKLHESYG-----DEE 122
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
F L G + + D+ L ++ V + + F +
Sbjct: 123 AFNQALTSSGTSLQSVKDNIHSYLLTKKLLQDRVSITDDQVQEYFETNKDSFAQQEQVEA 182
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
A +L + + + ++ K ++ E +A
Sbjct: 183 SHILVENEETAKEVKEMLDNGEDFAQLAEEYSVDTSNAGSGGELGYFAKGEMVAEFEEKA 242
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
+ +E E ++ K+ E ++ ++ EQ
Sbjct: 243 FSMEIEEISNPIETEFGFHIIKVTDKKEAEEAVLEDHKEEIQEILYEQ 290
>gi|313681760|ref|YP_004059498.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
kujiense DSM 16994]
gi|313154620|gb|ADR33298.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
kujiense DSM 16994]
Length = 280
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 23/270 (8%), Positives = 73/270 (27%), Gaps = 13/270 (4%)
Query: 26 LIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
W + L S+S S+ V +V ++ I G + + +
Sbjct: 6 AAWIMGLLLGSISASAAVLATVNGDEITSDEVNKVL------IEGTQGRLDSLSPDKQNE 59
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHG---RVWGEIARSPLFHGKDNKFSHDVFVSRL 141
L +I++ ++ + + G+ + I R + + + F +
Sbjct: 60 LRHRIIEGMIVQNLIYDDAQKTGILDSKEYKQELETTIDRLKV-QLAAKVWEQEQFDAIK 118
Query: 142 AREGINEKEYIDHYTKMLSRTDV--VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
+ + + + + + + + V + ++ K + +++
Sbjct: 119 VDAKEVKAYFDTNPNEFIDKEKIHARHILVRSKTQAQSIIASMKTLSGDRLKKEFMAQAK 178
Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
+ L + + + + ++
Sbjct: 179 LFSIGPSAARGGDLGYFPRGQMVASFNDAAFALKTGTVSSIPVQSQFGYHVIYVEDRKPA 238
Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
K + + + ++L KE E +
Sbjct: 239 KKMGFDAVKSFIEQRLKMDKFKETMEKKMA 268
>gi|308066898|ref|YP_003868503.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa
E681]
gi|305856177|gb|ADM67965.1| Parvulin-like peptidyl-prolyl isomerase [Paenibacillus polymyxa
E681]
Length = 310
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 48/159 (30%), Gaps = 13/159 (8%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+I E + E + +L+ K+G++F + +
Sbjct: 152 AEIDEYWEQHPEEFAVGKQIQLAALYVDNAEEA------EALLDRVKQGESFDVLIQEYS 205
Query: 526 AS---LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
++ Q+ +D + + V PI Y V V + ++
Sbjct: 206 GKPFGKDSSGQLGWVDEYDPLQPEAIMKAARELSSGDV-AGPISVNDGYAVIYVQDVRLK 264
Query: 583 PVQEKDKFISYLTQMM---NKDLLDSVIAYLKSQYSVTV 618
+K + + + + L+ V L+ +Y +
Sbjct: 265 NSPDKQQIRQQIRRSLALAQAAPLEEVEKSLRDKYGARI 303
Score = 40.6 bits (92), Expect = 0.75, Method: Composition-based stats.
Identities = 16/182 (8%), Positives = 48/182 (26%), Gaps = 31/182 (17%)
Query: 12 WVAKIFLVVLFVPFLIWGL------SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
W A I L V + + G TV +G++ + + +
Sbjct: 9 WTAVIILTVSVAALGGLIMLRGLSKPGDVSKDDGDHTVAEMGQEGISEEQW-------VA 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ ++ G L +++ + + +G++ + + +
Sbjct: 62 ELKKRYGTD--------------TLLQMLNRKAVQAETKRLGIKITQEDLQQVLEQDSKG 107
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ H F + G++ + + + + + +
Sbjct: 108 YDS----DHAYFDEMQRQFGLDPVDLRNEAEYRIGLEKIATQGIQVQEAEIDEYWEQHPE 163
Query: 186 YF 187
F
Sbjct: 164 EF 165
>gi|325295071|ref|YP_004281585.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065519|gb|ADY73526.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Desulfurobacterium thermolithotrophum DSM 11699]
Length = 182
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 14/189 (7%), Positives = 55/189 (29%), Gaps = 13/189 (6%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ + + +L + + V + + S K +
Sbjct: 5 LFSLSMVAV---TSLTAQGSDKILAKVNGKPITESQLEEVLKGLPAKYNSVKNNP----- 56
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
++L++L++ L Q + G+E + +V +I + + + +S
Sbjct: 57 ----QFQSQVLNSLINQELLYQEAKKEGIE-KNAKVQRQIKEAKEQILINALLEKHLKIS 111
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
++ + + + K + + + ++ + + ++ + +
Sbjct: 112 KVKVSDKEARAFYEKNKKRFTDANGKQISFEAVKLFIVQSLEQQKRRQLLSASLNRYIEK 171
Query: 200 RHVPAIADP 208
+
Sbjct: 172 LKKENKVEI 180
>gi|47565690|ref|ZP_00236730.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241]
gi|47557326|gb|EAL15654.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241]
Length = 283
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 123 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 182 TGFAPGQTVKEFEEAAYKLDAGKV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 241 EQQRLQDTTGKWKQQVVNGLLKDADIKVNDKEFKNTFE 278
>gi|238026987|ref|YP_002911218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia glumae
BGR1]
gi|237876181|gb|ACR28514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia glumae
BGR1]
Length = 259
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 24/189 (12%), Positives = 60/189 (31%), Gaps = 10/189 (5%)
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
Q + + P K + I++ + ++ + K+V E
Sbjct: 72 QEAIKEGVPNRPDVKQQVAIAQQAVVLRAMIEDFVKKNQPSDADIKARYDELTKSVSGNE 131
Query: 498 E--------VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDG 548
A +L+ + K G F D+ K + +D + K F +
Sbjct: 132 YHLHHILVDNEQLAKELIAKI-KAGAKFEDLAKQYSKDPGSAKNGGDLDWADPKSFVPEF 190
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P++ + + +V + + D+ + + Q + + L +
Sbjct: 191 ANAATHLQKGQMTDTPVKTQFGWHIIRVDDVRPVAPPPLDQVKAQIAQQIVQQKLQAFEE 250
Query: 609 YLKSQYSVT 617
L++Q +
Sbjct: 251 KLRAQAKIQ 259
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 4/156 (2%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + KK + S+ +++A Y++ + E ++ N++ A E +K G KF
Sbjct: 101 MIEDFVKKNQPSDADIKARYDELTKSVSGNEYHLH-HILVDNEQLAKELIAKIKAGAKFE 159
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A++ L K + FG+ I V
Sbjct: 160 DLAKQYSKDPGSAKNGGDLDWADPKSFVPEFANAATHLQKGQMTDTPVKTQFGWHIIRVD 219
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+++P +VK IA Q+ K ++ +
Sbjct: 220 DVRPVAPPPLDQVKAQIAQQIVQQKLQAFEEKLRAQ 255
Score = 39.1 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V V +P + Q + + S L KK+ LV+ L
Sbjct: 23 QNVAVVNGTPIPKARVDAMVAQLVQQ-----------GQPDSEQLRKKVSQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIKEGV 79
>gi|153807136|ref|ZP_01959804.1| hypothetical protein BACCAC_01413 [Bacteroides caccae ATCC 43185]
gi|149130256|gb|EDM21466.1| hypothetical protein BACCAC_01413 [Bacteroides caccae ATCC 43185]
Length = 330
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 16/116 (13%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K+ ++ + F +S + +V+ V V +K+ S + KQE+ +
Sbjct: 1 MKVASLLFLITFF---ISCNISNVNKDEIVAEVNGEKIYLSELSSQSKQEIFDLLNT--- 54
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + ++L NL+ L+ ++ + + + L +D
Sbjct: 55 --------AYEIKNRVLTNLIKQKLLENTAKNKNMSL--EEFLDFLVQQKLLLDQD 100
>gi|115525459|ref|YP_782370.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisA53]
gi|115519406|gb|ABJ07390.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisA53]
Length = 353
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 8/140 (5%)
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
T ++ K + + G +F I G + + S V
Sbjct: 214 KATEDKARKKLEDIQKKLKAPGADFAAIA---GEESDAKGSADLGSIPENQLIPEIRSHV 270
Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQMMNKDLLDSVIA 608
V PI + + K+T++K + +D+ + + L +A
Sbjct: 271 VGLAKGAV-SDPIRLDAGWHIVKLTDTKASYTRTLPEVRDQLAQQMRKERAAALRRGYLA 329
Query: 609 YLKSQYSVTVHDNLIQRYLD 628
L Q+ +++ + LD
Sbjct: 330 ELLKQHPPVLNELALSNLLD 349
Score = 37.5 bits (84), Expect = 6.3, Method: Composition-based stats.
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 34 LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL-DN 92
+ V VG V ++ + + + + A+ L + +L +
Sbjct: 77 SMGKNAGDVVARVGDTDVTADDLRA----QIAALGPQEQAALAKDPAQLSQLVRMLLANQ 132
Query: 93 LVSGATLDQF 102
LV +++
Sbjct: 133 LVLDEVIEKK 142
>gi|254478727|ref|ZP_05092097.1| hypothetical protein CDSM653_484 [Carboxydibrachium pacificum DSM
12653]
gi|214035341|gb|EEB76045.1| hypothetical protein CDSM653_484 [Carboxydibrachium pacificum DSM
12653]
Length = 238
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 15/170 (8%), Positives = 42/170 (24%), Gaps = 13/170 (7%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + V + + F L ++ +D +L L+
Sbjct: 62 NKGDVIAEVNGIPIYKNEFELRKGLALA------------SGVQADNIDDYVLQKLIKEK 109
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ + + I + + + + + G+ E EY + Y +
Sbjct: 110 VQEYLASKYNIRVSESEINEYIEKEKKEFNEYPE-AKKKLDELINASGMTEDEYWNTYER 168
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+R ++ + + + + S I
Sbjct: 169 YNARRILLFNKLYNFIVEEGMKKGELKKVEQMSSGTQNEYKKYFDDVIDK 218
>gi|253699826|ref|YP_003021015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
gi|251774676|gb|ACT17257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
Length = 325
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 30/304 (9%), Positives = 79/304 (25%), Gaps = 22/304 (7%)
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
G+ ++ + + ++K ++ + K K ++
Sbjct: 20 GNHQAWAEPMAEDNGLQIAARVNDRPIYYHQIKANVERTLAKYKRFGASKISDDVKKQVQ 79
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
L D K + ++ + + +
Sbjct: 80 KDELDRQVNMELLVQAGEKLKETDLEKKMEALLNMKGPDGSPRVKKDESREKEMREQLRR 139
Query: 456 VALPDGSYMW-----VQIKESIPARDRKLEEVLTDVKKDWKTV------------KTAEE 498
L + + V++ E R K V + K + +
Sbjct: 140 NLLAESYLVLRGIQDVRVPEEELKRFYKDNSAKFAVPEAVKVSHIMIAVDKKATPQEVAK 199
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
++K ++ E + K+F ++ K + + +F + F
Sbjct: 200 ANAKIVKVREELLQGKKSFEELAKEHSSGDSAAKGGDLGYINPQFMPPEFDKAAFQLKSG 259
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI----SYLTQMMNKDLLDSVIAYLKSQY 614
V ++ + + K + K G +QE + +L + + L+
Sbjct: 260 EV-SDVVKTKFGFHLIKAFDKKPGRIQEFSEVKVLLEKFLLNQYQERKRAEIAMELRRDA 318
Query: 615 SVTV 618
+ V
Sbjct: 319 RIEV 322
Score = 38.7 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 11/122 (9%)
Query: 13 VAKIFLVVL-FVPFLIWG----LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
V K + +L + G ++ + +G V + + + + ++ L
Sbjct: 3 VMKTIICLLSACALSLAGNHQAWAEPMAEDNGLQIAARVNDRPIYYHQIKANVERTLAKY 62
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+ ++ + + V D+ LD V+ L Q E + + ++ G
Sbjct: 63 KRFGASKISDDVKKQVQKDE--LDRQVNMELLVQAGEKLK----ETDLEKKMEALLNMKG 116
Query: 128 KD 129
D
Sbjct: 117 PD 118
>gi|163848456|ref|YP_001636500.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
aurantiacus J-10-fl]
gi|222526384|ref|YP_002570855.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
Y-400-fl]
gi|163669745|gb|ABY36111.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
aurantiacus J-10-fl]
gi|222450263|gb|ACM54529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
Y-400-fl]
Length = 321
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 24/235 (10%), Positives = 69/235 (29%), Gaps = 14/235 (5%)
Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
+ + ++ + + + + + + A + Q L + +
Sbjct: 85 DPQNLIDQMIDVELVVQAALAEGATVDEATIDSQVEQLRLAQAGGDEAQFLTFLQDNNIA 144
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
++ L + + + E+V T + AE + A ++ E
Sbjct: 145 DEEELRRLLRRDYLIEQMLLKHT-----TAEQVRARHILVAATPEEAESRKATAEAILAE 199
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENG 568
+ G +F + + + Q + + VFS ++ ++
Sbjct: 200 L-QGGADFAALARARSDDPGSAAQGGDLGWAPRGVYVEPFEEAVFSMQPGELRL--VQTD 256
Query: 569 LSYVVFKVTN-SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY----SVTV 618
+ + +VT +V ++ + Q +A L+S + +
Sbjct: 257 FGWHIIEVTEGPEVRSFTDRALLETQAGQEAFSATFLPWVAELRSSAEAAGKIEI 311
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 11/116 (9%), Positives = 30/116 (25%), Gaps = 23/116 (19%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
+ + + VG + + F + + + ++
Sbjct: 51 GTSGTVPAPDDAIARVGEEFILRRDFDRLY--------------LPGAD------PQNLI 90
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
D ++ + Q G D + ++ + L F++ L I
Sbjct: 91 DQMIDVELVVQAALAEGATVDEATIDSQVEQLRLAQAGG---DEAQFLTFLQDNNI 143
>gi|163781566|ref|ZP_02176566.1| hypothetical protein HG1285_01748 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882786|gb|EDP76290.1| hypothetical protein HG1285_01748 [Hydrogenivirga sp. 128-5-R1-1]
Length = 275
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 6/88 (6%)
Query: 34 LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
+ +G V VG + + F + + + E K+ L
Sbjct: 12 SLTFAGQGIVAKVGDRVITKGEFNSLFSFYWKEMLHFSPKRPTFED------RKRFLFRY 65
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ G ++ D+G+ D G V +
Sbjct: 66 IKGLIVEDLAPDMGIRVDDGEVLRRLRS 93
>gi|330993926|ref|ZP_08317856.1| Chaperone surA [Gluconacetobacter sp. SXCC-1]
gi|329758872|gb|EGG75386.1| Chaperone surA [Gluconacetobacter sp. SXCC-1]
Length = 462
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 35/343 (10%), Positives = 93/343 (27%), Gaps = 14/343 (4%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
+ +V + + + G V+ + + L +I+ L+ Q
Sbjct: 67 IIATVNGAVLTKRDVDTR----GRLFALSSGLDVSDDVMQR--LRPQIVRQLIDEKLRMQ 120
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ D + ++ IA + N + ++LA +G++ ID L
Sbjct: 121 EMLDRHINVPIQQIADAIAGIE----QRNGMPQNALRNKLAEDGVSLTTLIDQIRVQLGW 176
Query: 162 TDVVGMFVG--GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
T V+ G G + + + + E+ +Y++ + L
Sbjct: 177 TQVLRQETGERGRITAADIEQRTEALKREDGKPEYMISEIFVPVEDPRHTENELKFTETI 236
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ-LVFP 278
++ + + ++ + + + + + +
Sbjct: 237 IQELRQGAPFPVVAAQFSQGQSALDGGMMGWMQEDGLDPQVVDVARKMPDGAISNPIRVA 296
Query: 279 NQKEADEAFQSLKKGKKFIQ-LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
+ G + L+ Q D L + +L + +
Sbjct: 297 GGYVIATIAERRTVGHQMATILSIRQAFFPFDAPLDPENATDQQKATLDAANTFSGEARS 356
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
V + H ++ ++I + + KA
Sbjct: 357 CDQVEAQNKKLGEKHPTDPGELMLNHLNPQMREILEPLPVNKA 399
>gi|313888943|ref|ZP_07822603.1| putative peptidylprolyl isomerase PrsA1 [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845116|gb|EFR32517.1| putative peptidylprolyl isomerase PrsA1 [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 249
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 5/124 (4%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+ + E K G +F ++ K N + VF V
Sbjct: 126 EEDKAREIYEKIKNGGDFEELAKEYSTCPSKEKGGNLGTFTKGQMVKEFEDAVFENEVGT 185
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ P++ Y + K+ + KD+ + + + +++ + I LK +Y
Sbjct: 186 I-TEPVKTQFGYHIIKINQKNDARELSFDEVKDRIVEQVRRQKEQEIYNKKITELKDKYE 244
Query: 616 VTVH 619
V ++
Sbjct: 245 VKMN 248
Score = 37.1 bits (83), Expect = 8.4, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 9/79 (11%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ V +K+ + + Q G L+K +++ LV A
Sbjct: 2 DKDKVLAEVNGKKITGVDYNLFIDSLNPQLKQYFGG---------EELNKDVVNELVYQA 52
Query: 98 TLDQFIEDIGLEADHGRVW 116
L + + G++ + +
Sbjct: 53 LLYEDAMEKGMDKEDEFIQ 71
>gi|300024688|ref|YP_003757299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
denitrificans ATCC 51888]
gi|299526509|gb|ADJ24978.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
denitrificans ATCC 51888]
Length = 311
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 40/133 (30%), Gaps = 3/133 (2%)
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FG 545
+++ E +A +L + K G +F + K + + +
Sbjct: 137 EEEVSARHILVETEEQAKELKAKLDK-GADFAQLAKENSKDPGSKDDGGNLGYFGHGQMV 195
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605
VF V P++ + + K+ +S+ + + Q +
Sbjct: 196 PQFEEVVFKLKKGEV-SAPVKTQFGWHLVKLEDSRTKQPPAFEIVKDRIAQSLLLQKAQK 254
Query: 606 VIAYLKSQYSVTV 618
L++ + +
Sbjct: 255 TATELRANAKIEI 267
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 6/144 (4%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL- 307
S+ + + Y+ + E + ++ +++A E L KG F QLA+E K
Sbjct: 119 SDADARKIYDDQVKLLKPEEEVSARHILVETEEQAKELKAKLDKGADFAQLAKENSKDPG 178
Query: 308 ---SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
+LG F + + + KKG+ + + FG+ + + + + +F
Sbjct: 179 SKDDGGNLGYFGHGQMVPQ--FEEVVFKLKKGEVSAPVKTQFGWHLVKLEDSRTKQPPAF 236
Query: 365 QEVKKDIANQMRITKASEKVKEDY 388
+ VK IA + + KA + E
Sbjct: 237 EIVKDRIAQSLLLQKAQKTATELR 260
>gi|262189698|ref|ZP_06048066.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae CT
5369-93]
gi|262034418|gb|EEY52790.1| peptidyl-prolyl cis-trans isomerase SurA [Vibrio cholerae CT
5369-93]
Length = 365
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
L +++L+ L+ Q + IG++ D R+ I K+N+ + + ++ +A+E
Sbjct: 2 LREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEI----AKNNQQTQEQLIASVAQE 57
Query: 145 GINEKEYIDHYTKML 159
G+ E+ + K +
Sbjct: 58 GLTYPEFREQVRKEM 72
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 15/239 (6%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ +L L G +++ L D+ + +F
Sbjct: 129 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP---------TIFADQ 179
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKA 503
K + ++I + + EV + + + E +
Sbjct: 180 IKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQL 239
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKC 562
N+ V F ++ + + Q + + + Q+ + PV +
Sbjct: 240 NEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQI-S 298
Query: 563 FPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + + +V + K+K L + + + L++ V V
Sbjct: 299 EPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEV 357
>gi|219856704|ref|YP_002473826.1| hypothetical protein CKR_3361 [Clostridium kluyveri NBRC 12016]
gi|219570428|dbj|BAH08412.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 258
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 26/208 (12%), Positives = 62/208 (29%), Gaps = 9/208 (4%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
L + + + L ++ L T++ + +++ +
Sbjct: 55 LDEIISFELFYNYGKEIELEKDRDYLVKLETTKKELLIQETISKIMEN---IKVTDKEVE 111
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ + ++ + KA Q+ E K+G +F D K +
Sbjct: 112 DYYTNNKSMYKKPENITARHILVDSFEKAAQISNEI-KKGLSFEDAAKKYSSCPSKAQGG 170
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
N + + + F + + P++ Y + KV + + K+
Sbjct: 171 NLGNFTRGQMVPEFETAAFQLEIG-ILSKPVKTQFGYHLIKVEKKEKDSIKGFDKVKNAI 229
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ L Q I LK +Y + +
Sbjct: 230 KNGLLQEKRTLEYSKCINNLKDKYPIEI 257
>gi|229115799|ref|ZP_04245201.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3]
gi|228667682|gb|EEL23122.1| Foldase protein prsA 1 [Bacillus cereus Rock1-3]
Length = 293
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 39/244 (15%), Positives = 77/244 (31%), Gaps = 18/244 (7%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
KE K L++ T + + + + + + + K+ +KE L
Sbjct: 49 KELSKELKQKYGESTLYQMVLSKALLDKYKVSDEEATKQVKEAKDKMGDNFKETLEKLGL 108
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+D L + + + + E ++V + K + K + A
Sbjct: 109 KNEDELKEKMKPEIAFEKAIKATVTE---------KDVKDNYKPEMKVSHILVKDEKTAK 159
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKCF 563
+ V E G++F + K + Q + + + V
Sbjct: 160 E-VKEKVNNGEDFATLAKQYSEDTGSKEQGGEIAGFGPGQTVKEFEEAAYKLNAGQV-SE 217
Query: 564 PIENGLSYVVFKVTNSKV--GPVQEKDKFISYLTQMMNKDLL----DSVIAYLKSQYSVT 617
P++ Y + KVT+ K + KDK L Q +D V+ L +
Sbjct: 218 PVKTSYGYHIIKVTDKKELKPFEEVKDKIRKDLEQQRLQDTTGKWKQQVVNDLLKDADIK 277
Query: 618 VHDN 621
V+D
Sbjct: 278 VNDK 281
>gi|158429505|pdb|2PV3|A Chain A, Crystallographic Structure Of Sura Fragment Lacking The
Second Peptidyl-Prolyl Isomerase Domain Complexed With
Peptide Nftlkfwdifrk
gi|158429506|pdb|2PV3|B Chain B, Crystallographic Structure Of Sura Fragment Lacking The
Second Peptidyl-Prolyl Isomerase Domain Complexed With
Peptide Nftlkfwdifrk
Length = 299
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 12/119 (10%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ S K Q++ L +I++ L+ + Q + +G++ ++
Sbjct: 25 LMQSVKLNAAQARQQLPDDAT--------LRHQIMERLIMDQIILQMGQKMGVKISDEQL 76
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
IA K N + D SRLA +G+N Y + K + ++V V
Sbjct: 77 DQAIANI----AKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRIT 131
>gi|296445011|ref|ZP_06886972.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
trichosporium OB3b]
gi|296257432|gb|EFH04498.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
trichosporium OB3b]
Length = 294
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 11/154 (7%), Positives = 39/154 (25%), Gaps = 11/154 (7%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ + + EV + + + K G++F +
Sbjct: 127 AIKKTYDEAAKNQKPETEVHAHHILVPTEDEAKAAL---------KRVKGGEDFGKVADE 177
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+ + + + + P++ + V K+ +
Sbjct: 178 VSKDPGARGG-DLGWFTKDRMVPEFAEAAYKLEPGQI-SDPVKTQFGWHVIKLDEKRPKV 235
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
D+ +++ + + +I L+ +
Sbjct: 236 FPPLDQVREQVSRYVAQKAQSDLIVQLREGAKIE 269
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 6/73 (8%), Positives = 18/73 (24%), Gaps = 9/73 (12%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V ++ + + +++ +LD L+ +
Sbjct: 34 KVLAKVNGVEISDDDVKTALDDLGSGLPRQLEGKARENY---------VLDFLIDEQLVV 84
Query: 101 QFIEDIGLEADHG 113
Q + L
Sbjct: 85 QKAQRDKLGESPD 97
>gi|291286198|ref|YP_003503014.1| SurA domain protein [Denitrovibrio acetiphilus DSM 12809]
gi|290883358|gb|ADD67058.1| SurA domain protein [Denitrovibrio acetiphilus DSM 12809]
Length = 310
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 31/282 (10%), Positives = 73/282 (25%), Gaps = 7/282 (2%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ VG + + + L I + E + LD L + +
Sbjct: 28 NRVYAVVGEKVITQYELETLNPKRLQYIYKNFEGDKREEELNKYYV--AALDMLTNNYVI 85
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+Q G+ V G + + N D LA ++Y +
Sbjct: 86 EQAAAREGVRVSSREVDGAVKEI----IEKNSIDEDKLSELLAASNQTMEQYKWSIKIDI 141
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENR-SVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ ++ + + + + + L + +
Sbjct: 142 LKARLMSTVFRPKIIITEDDIKKYVEANAAALELSDMYELRIMTVDNKEQLDKALADFKD 201
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
++ + ++ +DE++ K E ++ +
Sbjct: 202 TGDFRSTVMKFSTSGNADNGGYLGWVELAFLDDEIRNTIAGKKGLTEPLEDHGSYRVFYV 261
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
+ + K+ L EE+ K + D L KE +
Sbjct: 262 EGFKNKDNVTGDKRDSIVKTLQEERSKEIFDNWLAEKRKEIL 303
>gi|294338772|emb|CAZ87106.1| putative peptidyl-prolyl isomerase [Thiomonas sp. 3As]
Length = 274
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 11/117 (9%), Positives = 35/117 (29%), Gaps = 1/117 (0%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+A +++ + F + + + + + V V
Sbjct: 139 EEAKRVLDALRGGKQTFTALALHHSIGQNAELGGALGWQSEQAMSAEVLGVVRKLQPGQV 198
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
PI G + + ++ + P + ++ + Q + + L + + L +
Sbjct: 199 -AGPIALGENLAIIQLVAERTPPKPDFEQLKPQIEQQLRQAALQAHVQELAKNAKID 254
>gi|325282949|ref|YP_004255490.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
proteolyticus MRP]
gi|324314758|gb|ADY25873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
proteolyticus MRP]
Length = 652
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 16/146 (10%), Positives = 46/146 (31%), Gaps = 14/146 (9%)
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS--------LLTTNQINR 536
++ + + + KA +L+ + + G +F ++ K
Sbjct: 184 QTEQRLRGRQIVVDDEKKARELLAQA-RGGADFAELAKKNSTENAENGGALGALGEGGAL 242
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFIS 592
E + + V + P + + +G + V KV K++ +
Sbjct: 243 QPVEPVVLPEEVAAAVQALPAPGL-TDVVASGGRFYVVKVEELLPPETKPFETVKEEVKT 301
Query: 593 YLTQMMNKDLLDSVIAYLKSQYSVTV 618
L + + +++ + + + V
Sbjct: 302 ELEKSKKRAAVEAFMDEQLAGAKIEV 327
Score = 44.1 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 44/582 (7%), Positives = 128/582 (21%), Gaps = 57/582 (9%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
+ + V + + + + A ++ +V
Sbjct: 40 RGEQGTPAIRVNGKAITAEKLQKIQDNNPSPFASQGK-------ALQDDFRTFMISQVVR 92
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
+ Q D + V E+ + ++N + L R G+++ EY +
Sbjct: 93 QELMVQAARD--INVTREDVNAEVTKV---REQNNLTDDAAWTDALQRVGLSDSEYREQV 147
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ L+ + + + R + +
Sbjct: 148 KEGLAVQRKNEAIEAAVPAATEQEMKTYYDLN----PTLFQTEQRLRGRQIVVDDEKKAR 203
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
S + + +
Sbjct: 204 ELLAQARGGADFAELAKKN--------------STENAENGGALGALGEGGALQPVEPVV 249
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
+ A +A + + ++ + + K+
Sbjct: 250 LPEEVAAAVQALPAPGLTDVVASGGRFYVVKVEELLPPETKPFETVKEEVKTELEKSKKR 309
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
A + + P++ V + ++ ++ +V ++ + +
Sbjct: 310 AAVEAF--MDEQLAGAKIEVVDPAWKYEDPTVAEVGGRKVPYSEVVGRVMQNQQLMMMMQ 367
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
+ + + + + IP V G ++
Sbjct: 368 GMEGGQLTEMVNGMLKPSVVEQLIQEYAAPSIVKAENIPVVGTRQDLVSGLIAYGGRNVK 427
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
V D + +E V+++ + L +G
Sbjct: 428 VTDED---LQAAYQERQQQFQTPASAVVSEATFPSREQ-----------ALAFRQDWQGG 473
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN----GLSY 571
+F G + Q+ + + +F G + V + N +
Sbjct: 474 DFTQAATAAGGIVSERGQV---APDTDLMEPSVLQSIFEGELRAVGSTSLTNIVQASDGW 530
Query: 572 VVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
V VT+ + + + + L + ++
Sbjct: 531 KVVAVTDLQQGRVLPLDEVRTSLKASLFNEKQAAEGEKFLSS 572
>gi|124004173|ref|ZP_01689019.1| putative exported isomerase [Microscilla marina ATCC 23134]
gi|123990243|gb|EAY29742.1| putative exported isomerase [Microscilla marina ATCC 23134]
Length = 777
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 10/104 (9%), Positives = 32/104 (30%), Gaps = 4/104 (3%)
Query: 524 LGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
+L + + D + ++ +++ V+ + +
Sbjct: 675 NELNLTNPLNVKVNQGVYEKGENDFVDKI----AWEKGKTELQDKDRLVLVVIEDVLQPR 730
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
++ + + L + LK +Y V V+ +I + +
Sbjct: 731 LKTYKETRGKVIANYQTYLEKEWLESLKKEYPVQVNQEVIDQLV 774
>gi|146340301|ref|YP_001205349.1| hypothetical protein BRADO3324 [Bradyrhizobium sp. ORS278]
gi|146193107|emb|CAL77118.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
Length = 287
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 20/220 (9%), Positives = 49/220 (22%), Gaps = 17/220 (7%)
Query: 34 LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
+ S S VV V + +N +++L+ L
Sbjct: 1 MTSAHAQSIVVMVNGDPITDYDIEQR-------------SKLNFLSTHKQQSRQEVLNEL 47
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
+ + + G+E + A G + + + L +G+ +
Sbjct: 48 IDDKVKIKEGKKFGVEPSSSDIDQSFAGM----GSRMRLNAEQLTRSLESQGVRPETLKQ 103
Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
+ T +V + A + + +
Sbjct: 104 RIKAEIVWTSLVRGRYKERLFVSDKDVAAAVAAAGGDTGQQGQSFEYKMQPVVLIVPNSS 163
Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
Q + + R+ + E+
Sbjct: 164 NQGAMEIRQKEAEALRGRVQSCADANNISRTTANAVVKEI 203
>gi|189499014|ref|YP_001958484.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
phaeobacteroides BS1]
gi|189494455|gb|ACE03003.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
phaeobacteroides BS1]
Length = 440
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 22/192 (11%), Positives = 49/192 (25%), Gaps = 10/192 (5%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
LV + + G + V VG + + S ++
Sbjct: 10 LVAVVFIMVAAGF-QRAGAAVADRIVAVVGNEMIMQSQVDEQAMMARLQYTEAKNDP--- 65
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
L IL+NLV+ + ++ D + F ++
Sbjct: 66 ------SLKAGILENLVTRKIVLTKARIDSIQVDESDIEKRTDERMRFLRSKFSSIEEME 119
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ + EKE D ++ + G+ + ++ + V +
Sbjct: 120 STFSKSYAVIEKEIKDDIRDQQLINNLRRQKMMGVNVTYEEVEDFYGANRDKLPVVPEAV 179
Query: 198 NNRHVPAIADPS 209
V +
Sbjct: 180 EVSQVVMYPKVT 191
>gi|326317152|ref|YP_004234824.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323373988|gb|ADX46257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 261
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 49/146 (33%), Gaps = 2/146 (1%)
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-T 531
+ + V + K++K E +A ++ K+G F DI K +
Sbjct: 117 EIQAEYDKYVAANTGKEYKASHILVETEDQAKAIIASI-KKGAKFEDIAKKQSKDPGSGA 175
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
+ + + + + P++ + V ++ + + + + D+
Sbjct: 176 RGGDLDWATPSSYVAEFTQALVKLDKGKMTQTPVKTQFGWHVIRLDDVREAKLPKLDEVK 235
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ Q + + L L+++ V
Sbjct: 236 PQIAQQLQQQKLAKFQEDLRAKAKVE 261
Score = 37.1 bits (83), Expect = 9.2, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 29/98 (29%), Gaps = 11/98 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + + + + V V + VP L ++ G + E
Sbjct: 5 LLSGLVAAAVLGTSALPAIAQNVAVVNGKAVPKERVE-----VLKQQVERSGRPITPE-- 57
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
++ +I + +++ Q + GLE
Sbjct: 58 ----IEGQIKEEVIAREIFLQEAQKRGLEGSQNVKDQM 91
>gi|229102919|ref|ZP_04233612.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28]
gi|228680505|gb|EEL34689.1| Foldase protein prsA 1 [Bacillus cereus Rock3-28]
Length = 293
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 133 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 191
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KDK L
Sbjct: 192 AGFGPGQTVKEFEEAAYKLNAGQV-SEPVKTSYGYHIIKVTDKKELKPFEEVKDKIRKDL 250
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V+D
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKDADIKVNDK 281
>gi|134097438|ref|YP_001103099.1| hypothetical protein SACE_0833 [Saccharopolyspora erythraea NRRL
2338]
gi|291004572|ref|ZP_06562545.1| hypothetical protein SeryN2_08640 [Saccharopolyspora erythraea NRRL
2338]
gi|133910061|emb|CAM00173.1| hypothetical protein SACE_0833 [Saccharopolyspora erythraea NRRL
2338]
Length = 308
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 10/128 (7%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM---ISQKIGFVVNS 77
L G+ A VG ++P + + + L + ++
Sbjct: 7 LLASIATAGILLAGCGTGQPGAAAIVGDTRIPVGQVQSWFTEVLNKEPGLRPQLQQQGTM 66
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS--PLFHGKDNKFSHD 135
+ L +++ V + Q + GL D RV I + P + F+
Sbjct: 67 DE-----LGRRLASFTVQQELIRQAAGEEGLRVDEQRVTAAIDQMGGPRAATQGTIFTEG 121
Query: 136 VFVSRLAR 143
Sbjct: 122 NIRDMTRS 129
>gi|269926821|ref|YP_003323444.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
terrenum ATCC BAA-798]
gi|269790481|gb|ACZ42622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermobaculum
terrenum ATCC BAA-798]
Length = 380
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 11/134 (8%), Positives = 35/134 (26%), Gaps = 27/134 (20%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
+ + V V +K+ F + ++ G + + ++V
Sbjct: 84 NFDPNGIVAVVNGEKITNKEFYQE-------LEKRYGQDL--------------ISDMVI 122
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
++Q G+ + + + + F + + + +
Sbjct: 123 TKLIEQEARKRGVSLSNEDMQKALQQLQ------TAFPGQSIEEIAQGQNMTGDQLREQV 176
Query: 156 TKMLSRTDVVGMFV 169
M ++ V
Sbjct: 177 RVMALLDKMLAPQV 190
>gi|229196551|ref|ZP_04323295.1| Foldase protein prsA 1 [Bacillus cereus m1293]
gi|228586907|gb|EEK44981.1| Foldase protein prsA 1 [Bacillus cereus m1293]
Length = 288
Score = 49.1 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 128 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 186
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 187 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 245
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 246 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 283
>gi|281356754|ref|ZP_06243245.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis
ATCC BAA-548]
gi|281316881|gb|EFB00904.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis
ATCC BAA-548]
Length = 314
Score = 49.1 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSW-KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+S + SV + + + + +QE + G + + +K +D+L+
Sbjct: 24 NSVLASVNGEPISLWDVLPATRQQEYQAYAAYSGDRLYEAI---RQIRRKTVDDLIDRKL 80
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPL 124
L D E + + E+
Sbjct: 81 LIADYRDKPFEISNQEIEAELDNIAE 106
>gi|292493615|ref|YP_003529054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
halophilus Nc4]
gi|291582210|gb|ADE16667.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
halophilus Nc4]
Length = 320
Score = 49.1 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 51/168 (30%), Gaps = 9/168 (5%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ +++ ++ VK +K E +A QL + K L
Sbjct: 133 LARERYQANQEQYQLPEQVKVSHILIKAEERSEEEARQLAEKVRKLALAEEKPFAELAVE 192
Query: 528 LLTTNQINRMDNENKFFGY-----DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
+ R + F F+ +++ + + ++ +
Sbjct: 193 YSEDPSVERNQGDLGFIARGKTVKPFEEAAFALKQPGNISPVVKSRFGFHIIRLEERQPA 252
Query: 583 PVQEKDKFISYLTQMMNKDLLDSV----IAYLKSQYSVTVHDNLIQRY 626
VQ D+ L Q + L+ V + +++ + ++ +Q
Sbjct: 253 QVQPFDQVKEKLVQEAKETYLNKVVQTHLNQIRNAEGIQMNREALQNL 300
>gi|182626803|ref|ZP_02954541.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens D str. JGS1721]
gi|177907849|gb|EDT70447.1| peptidyl-prolyl cis-trans isomerase family protein [Clostridium
perfringens D str. JGS1721]
Length = 248
Score = 49.1 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 45/157 (28%), Gaps = 5/157 (3%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V + + + + + +A ++ E + F D
Sbjct: 92 VTVTDDEAKAFYQEHKENFVELETVTAKHILVASEEEAKKVEEEIASGSITFEDAANKYS 151
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-- 583
+ N + F+ + V P++ Y + KV +
Sbjct: 152 SCPSKEQGGNLGSFSKGMMVPEFEEAAFNLELG-VVSAPVKTQFGYHLIKVEDKTEAKTK 210
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
K++ ++ L Q + +I L+ +Y V +
Sbjct: 211 AFEDVKEQVVNMLIQERQQKKYLELIKELREKYGVKL 247
Score = 37.1 bits (83), Expect = 9.6, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 44/124 (35%), Gaps = 20/124 (16%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ +VG ++ + + + ++ S+ +++L+ ++ +
Sbjct: 3 KKVLATVGNTEITSD----YIDEIIARYPAQQQAMLASDEG-----KRQVLEQAIAFELM 53
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+F ++ GL+ F + NKF+ ++ + ++ ++ D K
Sbjct: 54 SEFAKETGLDKTEE-----------FKDQLNKFAKELLAQMVMKKTLSSVTVTDDEAKAF 102
Query: 160 SRTD 163
+
Sbjct: 103 YQEH 106
>gi|219849264|ref|YP_002463697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
aggregans DSM 9485]
gi|219543523|gb|ACL25261.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
aggregans DSM 9485]
Length = 515
Score = 49.1 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 40/420 (9%), Positives = 107/420 (25%), Gaps = 32/420 (7%)
Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
V + + ++ +L + +++
Sbjct: 57 IYEQVWIPSRPVAQVGSITLTRSDYWREQRLAYARQIYQNFQLLDLFGNNPQIAQQFQGR 116
Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA-EEQGKSLSDISLGSFSKEYIPDVSLA 326
I +Q+ + E +E S ++ Q A E G ++ D + + + + L
Sbjct: 117 SIVIDQQIRTLRRAEINEQTVSEWIDRQIKQRASTEFGITIGDDEIMQTAVADLAFIFLP 176
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
+ A + I ++
Sbjct: 177 ALPEPTPTPDANATPVPTVDPSATATPEPTATPSPTPGGPTPTPEPSPTLIPTSTPVPTP 236
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPL-VDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ +++ + + + E + +
Sbjct: 237 LPEEARVQFDQIVDEIYRRYELELIVSETKPELSKEEFRMALMEQYRDRLLNERIQAQLV 296
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+D + + + +K P + E++ T A +
Sbjct: 297 PEDGFTYSTEPERVTARQILIAVK---PPAEATPEQIEAAFAAALPT----------AQE 343
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQ------INRMDNENKF--FGYDGISQVFSGPV 557
LV + + G +F + + + +R + + + ++ F+ PV
Sbjct: 344 LVTQL-RNGADFAALAAERSDDPGSRDNGGDIGSFDRNGFADNGATYPPELVAAAFALPV 402
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+ + + +VTN V ++ Q LD IA +++ +
Sbjct: 403 NQI-SDPVRTQFGWHILEVTNRIVPSEADQ-------LQKARTKALDEWIAEQRAKADIR 454
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 35/383 (9%), Positives = 92/383 (24%), Gaps = 43/383 (11%)
Query: 40 SSTVVSVGRQKVPFSSF---------INSWKQEL---------GMISQKIGFVVNSER-- 79
S V VG + S + ++ + Q G + ++
Sbjct: 65 SRPVAQVGSITLTRSDYWREQRLAYARQIYQNFQLLDLFGNNPQIAQQFQGRSIVIDQQI 124
Query: 80 --ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF------------ 125
R ++++ + + + + G+ + F
Sbjct: 125 RTLRRAEINEQTVSEWIDRQIKQRASTEFGITIGDDEIMQTAVADLAFIFLPALPEPTPT 184
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ V S A + + L ++A+
Sbjct: 185 PDANATPVPTVDPSATATPEPTATPSPTPGGPTPTPEPSPTLIPTSTPVPTPLPEEARVQ 244
Query: 186 YFENRSVDYIVLNNRHVPAIADPS---NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEK 242
+ + Y + + P E+Y+D +
Sbjct: 245 FDQIVDEIYRRYELELIVSETKPELSKEEFRMALMEQYRDRLLNERIQAQLVPEDGFTYS 304
Query: 243 EKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
+ ++ ++ + E + Q+ + + +++
Sbjct: 305 TEPERVTARQILIAVKPPAEATPEQIEAAFAAALPTAQELVTQLRNGADFAALAAERSDD 364
Query: 303 QGKSLSDISLGSFSKEYIPD-----VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
G + +GSF + D + + + FG+ I V+N
Sbjct: 365 PGSRDNGGDIGSFDRNGFADNGATYPPELVAAAFALPVNQISDPVRTQFGWHILEVTNRI 424
Query: 358 -PSFTVSFQEVKKDIANQMRITK 379
PS Q+ + ++ +
Sbjct: 425 VPSEADQLQKARTKALDEWIAEQ 447
>gi|319762261|ref|YP_004126198.1| ppic-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
denitrificans BC]
gi|330825811|ref|YP_004389114.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
denitrificans K601]
gi|317116822|gb|ADU99310.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
denitrificans BC]
gi|329311183|gb|AEB85598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alicycliphilus
denitrificans K601]
Length = 261
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 20/189 (10%), Positives = 60/189 (31%), Gaps = 3/189 (1%)
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
+++ L + L ++ Q + + + E K
Sbjct: 73 MQEAQKRGLEGTADYKTQMELARQTILIRELFVDFQKNNPVTDAEIQAEYDKFVAANAGK 132
Query: 492 TVKTAEEVSSKANQL--VLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDG 548
K + + +K ++ ++ K+G F DI K + + + +
Sbjct: 133 EYKASHILVAKEDEAKSIIASIKKGAKFEDIAKKQSKDPGSGARGGDLDWANPGSYVPEF 192
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+++ + V ++ + + + + D+ + Q + + L
Sbjct: 193 TEALVKLEKGKMTQTPVKSQFGWHVIRLDDVRDAQLPKLDEVKPQIAQQLQQQKLAKFQE 252
Query: 609 YLKSQYSVT 617
L+++ V
Sbjct: 253 DLRAKAKVE 261
>gi|159043736|ref|YP_001532530.1| SurA domain-containing protein [Dinoroseobacter shibae DFL 12]
gi|157911496|gb|ABV92929.1| SurA domain protein [Dinoroseobacter shibae DFL 12]
Length = 398
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 44/152 (28%), Gaps = 19/152 (12%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+L + LI + + G V++V + + + +
Sbjct: 7 ALLALAMLIGQPATSQAQTFG--PVITVNNEGISGYELEQ-----REKFVTALRLPGDPA 59
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
R G L+ Q GLE + + + + F+
Sbjct: 60 RLAREG--------LIEDKLKLQAARAAGLEIGIDELELGLEE----FASRANLTTEQFI 107
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ LA EG+ + + D L +++ G
Sbjct: 108 AALADEGVAPETFRDFVRADLVWRELIRQRFG 139
>gi|152978410|ref|YP_001344039.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
succinogenes 130Z]
gi|150840133|gb|ABR74104.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Actinobacillus
succinogenes 130Z]
Length = 317
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 15/152 (9%), Positives = 51/152 (33%), Gaps = 20/152 (13%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+ ++ +S +V V +V + + S +
Sbjct: 8 AIALAAMGLFVISSGAQAVKVEQVVATVNGEPILESQLQRVMGKR--------------- 52
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
A + + +D ++ + + +++ G++ + +V + N ++ +
Sbjct: 53 -ANTESNRRVAVDKIIDDMLVQKAVKESGVKVNPAQVNQIVHNI----ADQNGLTYGQLL 107
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
L +GI+ ++ + + + +V +G
Sbjct: 108 DALDYQGISLSQFKANISNQILMAEVRNRSIG 139
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 14/149 (9%), Positives = 45/149 (30%), Gaps = 3/149 (2%)
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
P + + + + ++ Q+ + F + KN L+
Sbjct: 165 NPKAITATQYKARHILLKLTPLLNDAQAKAQLTQIRADIQSGKTTFAEAAKNYSKDYLSG 224
Query: 532 NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KD 588
+ +++ + + V P + + + +VT+++ G + + +
Sbjct: 225 ANGGDLGFAFPENYVPEFAKMMTTAKQGVISAPFKTEFGWHILEVTDTRQGDITDVAYRQ 284
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
K L ++ + L+ +
Sbjct: 285 KAYETLVNEQLREYSKDWVKALRKHAEIK 313
>gi|327541306|gb|EGF27848.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopirellula
baltica WH47]
Length = 350
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 41/295 (13%), Positives = 92/295 (31%), Gaps = 9/295 (3%)
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
D+ S V YV ++ T+ + +++ + T A++K +E
Sbjct: 35 DAQLSRMLAQASGEVPEDELHYVKLRMTRSLLVQTIQSRMLREAFLLEQVGTAAADKRRE 94
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLP-LVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ E+ K ++D +D + +
Sbjct: 95 AEATMAAKARQMFYETELPGLMKKANVDSKAELDDLLRKEGSSLAFRQREFMDQMLGSLY 154
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++KD V+L + + +E + K + + T + SK +Q
Sbjct: 155 IRSKVNKDPAVSLSE---IVRYYQEHQSKYEHKARARWEQLTVMFSNHATRDAARSKLSQ 211
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+ E G ++ ++ N+ Q+FS P+ + I
Sbjct: 212 MANEALYGGSMTSVAKAQSEEPFASSGGLHDWTNQGSLVSTILDQQIFSLPIGEM-SDVI 270
Query: 566 ENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
E+ +Y V +V + + +D L Q + + V+ ++ + V
Sbjct: 271 EDNDAYHVIRVLEREDAGVTPVGELQDDISDILRQQKIRADQEEVMVEVRQRVPV 325
>gi|303234820|ref|ZP_07321445.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4]
gi|302493938|gb|EFL53719.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4]
Length = 321
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 54/173 (31%), Gaps = 1/173 (0%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
L + + + S + V +G++ + + Q I +
Sbjct: 4 FLAIVLAMMMVMVTACSNKPNGAVAKIGKEYIYQKDVDKVMEDYKQYYGQDIFNPNTEQG 63
Query: 80 ARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
++ + KI+D L++ ++ ++D +E V E+ + G +KF +
Sbjct: 64 KEALKQIKPKIIDMLINEKIANKLMKDKKIEVSDKEVQAEVDKLQKQLGGADKFKEQLKK 123
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + E+ K LS+ + + N
Sbjct: 124 ENMTEQALKEQIEKQLKNKKLSQQFEKDFKPSDKEIKDEFDKNIDTYTQYNAD 176
>gi|88606731|ref|YP_504706.1| hypothetical protein APH_0074 [Anaplasma phagocytophilum HZ]
gi|88597794|gb|ABD43264.1| conserved hypothetical protein [Anaplasma phagocytophilum HZ]
Length = 393
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 10/79 (12%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + ++ + A + G +++L L+ L+
Sbjct: 28 AVVDDKVLTSLDVDR----------REHANGFFYKTAYAEGNRREVLGLLIDEVILELEA 77
Query: 104 EDIGLEADHGRVWGEIARS 122
+ +G+ + V E+ R
Sbjct: 78 KQLGITVEKQEVAQEVERL 96
>gi|222111223|ref|YP_002553487.1| ppic-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
TPSY]
gi|221730667|gb|ACM33487.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax ebreus
TPSY]
Length = 261
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 48/137 (35%), Gaps = 2/137 (1%)
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNE 540
V + K++K E +A ++ K GK F DI K + +
Sbjct: 126 VAANAGKEYKASHILVEKEDEAKAIIASIKKGGK-FEDIAKKQSKDPGSGARGGDLDWAS 184
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
+ + + + P+++ + V ++ + + + + ++ + Q + +
Sbjct: 185 PSSYVAEFTEALVKLEKGKMTQTPVKSQFGWHVIRLDDVREAQLPKLEEVKPQIAQQLQQ 244
Query: 601 DLLDSVIAYLKSQYSVT 617
L L+++ V
Sbjct: 245 QKLAKFQEDLRAKAKVE 261
>gi|83952309|ref|ZP_00961041.1| PPIC-type PPIASE domain [Roseovarius nubinhibens ISM]
gi|83837315|gb|EAP76612.1| PPIC-type PPIASE domain [Roseovarius nubinhibens ISM]
Length = 441
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 47/160 (29%), Gaps = 23/160 (14%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
I K +T + L + + + + + S V++V +
Sbjct: 14 IAKFFQTSAVALVLGLTPLT------AAPVIAQSKFEAVITVNNAPITQFEIEQ-----R 62
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ + + + L+ Q G+E + ++ + R
Sbjct: 63 ARFLRLLRAPGDPIALAR--------EQLIEDRLKLQAARQSGIEVNEEQIAAGMDR--- 111
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
S V LA EG+ E+ + +S +D+
Sbjct: 112 -FASQANLSGAEMVKLLASEGVYEETFRAFIIAGVSWSDL 150
>gi|146296118|ref|YP_001179889.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409694|gb|ABP66698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 340
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 18/188 (9%), Positives = 47/188 (25%), Gaps = 14/188 (7%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+ + S + I V + + LI + + + V+ V ++ + +
Sbjct: 1 MNRKSLIVITSIIFVSIILSLLIL-KDHIVKMIDDNKVVLEVNGDQITKREYKIRFNTLK 59
Query: 65 GMISQKIGFVVNSERA-----RSVGLDKKILDNLVSGATLDQFIEDIGLEAD---HGRVW 116
Q ++ L ++ L+ Q + +
Sbjct: 60 ENAIQFSSRTDILDQVFNGKTYRELLKDELFRILIEELLCLQEARRKNIYLTRQEEDEIR 119
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I + F L + G +E + K + + S+
Sbjct: 120 KYIEELKRDMEM-----RNYFNQYLRKIGSDENHFYRDLQKTRIINKLYKYVTERITLSD 174
Query: 177 LLLDQAKR 184
+ +
Sbjct: 175 SEVIKYYN 182
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 27/210 (12%), Positives = 74/210 (35%), Gaps = 9/210 (4%)
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
D ++ + + I E +R K ++K + + ++ + A +
Sbjct: 128 DMEMRNYFNQYLRKIGSDENHFYRDLQKTRIINKLYKYVTERITLSDSEVIKYYNANKSQ 187
Query: 479 LEEVL-TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN-- 535
++ D+ + + + AN+++ E K G++F + K + + +
Sbjct: 188 FRKIKVMDIFLRVENAEEDAKKRKVANEIISEL-KRGEDFEKLVKKYS-EVESLDGKKGI 245
Query: 536 ----RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFI 591
R + +G +VF V + ++V + + + K +
Sbjct: 246 IDYFRKGEKEAQYGSVFEEEVFKLAVGQISNVIKTVNGYHIVKVIDEKYMPFDEVKGEIQ 305
Query: 592 SYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ L + ++ S I LK ++++ +
Sbjct: 306 TKLIKQKKDEVFKSYIESLKKMSKISIYKD 335
>gi|324326356|gb|ADY21616.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 283
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 123 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 182 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 241 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 278
>gi|16077140|ref|NP_387953.1| protein secretion PrsA [Bacillus subtilis subsp. subtilis str. 168]
gi|221307882|ref|ZP_03589729.1| hypothetical protein Bsubs1_00365 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312204|ref|ZP_03594009.1| hypothetical protein BsubsN3_00365 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317137|ref|ZP_03598431.1| hypothetical protein BsubsJ_00365 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321400|ref|ZP_03602694.1| hypothetical protein BsubsS_00365 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|586895|sp|P37566|YACD_BACSU RecName: Full=Uncharacterized protein yacD
gi|467461|dbj|BAA05307.1| unknown [Bacillus subtilis]
gi|2632339|emb|CAB11848.1| putative protein secretion PrsA homolog [Bacillus subtilis subsp.
subtilis str. 168]
Length = 297
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 23/304 (7%), Positives = 77/304 (25%), Gaps = 40/304 (13%)
Query: 8 ASRTWVAKIFLVVLF--VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
SRT I +L + + S ++ ++G + V ++ + + G
Sbjct: 2 KSRTIWTIILGALLVCCIAVAYTLTKSQAGASSSGESIATIGGKSVTREEWLKEMEDQYG 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE---IARS 122
K L+++++ ++Q + L+ V E I
Sbjct: 62 ---------------------KSTLEDMINVRVVEQLAKKNKLKISKSEVDREFLLIKAV 100
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
+D + + ++ + E + + +
Sbjct: 101 NNSFYEDEHTTEKEWKDQIRYNILLEDLLTRDIDISNKELESFYNKNKELYQFDDSYRIR 160
Query: 183 KRFYFENRSVDYIVLNNRHVPAIADP-----SNAVLTQW---------FEKYKDNYRAPE 228
+ ++ + + ++ + + + E
Sbjct: 161 HIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEE 220
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
K + + + + +L+ + + + + + Q+ +
Sbjct: 221 AKTLKEDEWSQEPIKVSNGYAIIQLKEKLKARTFSFDEVKDQIRRQIAMDQLGDKATVKT 280
Query: 289 SLKK 292
K+
Sbjct: 281 LWKE 284
>gi|229121887|ref|ZP_04251106.1| Foldase protein prsA 1 [Bacillus cereus 95/8201]
gi|228661536|gb|EEL17157.1| Foldase protein prsA 1 [Bacillus cereus 95/8201]
Length = 288
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 128 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 186
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 187 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 245
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 246 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 283
>gi|225166093|ref|ZP_03727827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae
bacterium TAV2]
gi|224799664|gb|EEG18159.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae
bacterium TAV2]
Length = 351
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 19/184 (10%), Positives = 49/184 (26%), Gaps = 5/184 (2%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
D L + V + + L I + + + + + I+
Sbjct: 49 DGLDMRFANGIAAIVEDRVITVDDIRRELAPILPQIRRDS-RNAKEFQDKVQAVQEDIVR 107
Query: 92 NLVSGATLDQFIEDIGLE-ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+L+ + + G + I+ + F+S L G+ ++
Sbjct: 108 SLIDRTLIVKDFYKDGRRHIPASYIDNAISDQMAQKFDN---DRAKFLSYLRARGLTLRD 164
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
Y + L + + +A E++ ++ R + +
Sbjct: 165 YRKEVEEDLVYGYMRSQQRKSQSIVSPARVEAYYKQNESKFYQEEAIHLRMIQLNRENGQ 224
Query: 211 AVLT 214
A
Sbjct: 225 ADAH 228
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 43/128 (33%), Gaps = 4/128 (3%)
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ + +AN+++ ++ G+ F D+ K + D + +F
Sbjct: 224 QADAHLIVRANEIIDKF-NNGEKFEDLAKAYTQDSRKARGGDWGWQRKVDLKPDFSTPLF 282
Query: 554 SGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
S V ++ ++++ + +D+ L M ++ + + L
Sbjct: 283 SLKKGGVTAPILQGDACFILYAEDYRAAGVPAIDEVRDQIERTLIAQMARESQEKWLEKL 342
Query: 611 KSQYSVTV 618
+ + +
Sbjct: 343 RRGAYIKL 350
>gi|224372671|ref|YP_002607043.1| foldase protein PrsA [Nautilia profundicola AmH]
gi|223588937|gb|ACM92673.1| foldase protein PrsA [Nautilia profundicola AmH]
Length = 286
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 31/203 (15%), Positives = 62/203 (30%), Gaps = 4/203 (1%)
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
VD K K V P + L+ ++ K + + + D +E+
Sbjct: 85 QYVDTMVLYKKAKSVEKTPQFQALVKKMAVDYWLKQKLNNMKISDAEVKKFY-EENKDIY 143
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQIN 535
+ +V K KTAE++ ++ L + + + F ++ K N
Sbjct: 144 FKTTPKVKARHIV-VKDEKTAEKLINELKGLHGKALE--EKFAELAKKYSTGPTKVNGGE 200
Query: 536 RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT 595
+ K V + P++ Y V V ++ +
Sbjct: 201 LGWFDPKQMVQPFAEAVNKMKPGELTLKPVKTRFGYHVILVEEKNEKNYMPLNEVKLQII 260
Query: 596 QMMNKDLLDSVIAYLKSQYSVTV 618
+ + + L I LK V +
Sbjct: 261 EYLKRAKLQKEIQKLKDSSKVDI 283
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 29/138 (21%)
Query: 15 KIFLV--VLFVPFLIWGLSDALFSVS----------GSSTVVSVGRQKVPFSSFINSWKQ 62
KI L + F G+ + + S ++ V ++ +KV N +
Sbjct: 3 KIVLGGLIAAAAFAFPGMQGGMGNASMTGKPMKGLTDNTVVATIDGKKVTVKDVNNFLQG 62
Query: 63 EL--GMISQKIGFVVNSERARSVGLDKKIL-------------DNLVSGATLDQFIED-- 105
I + + + +D +L LV +D +++
Sbjct: 63 MTADNRIRLQDLPAQHVGQFVKQYVDTMVLYKKAKSVEKTPQFQALVKKMAVDYWLKQKL 122
Query: 106 IGLEADHGRVWGEIARSP 123
++ V +
Sbjct: 123 NNMKISDAEVKKFYEENK 140
>gi|94967775|ref|YP_589823.1| hypothetical protein Acid345_0744 [Candidatus Koribacter versatilis
Ellin345]
gi|94549825|gb|ABF39749.1| hypothetical protein Acid345_0744 [Candidatus Koribacter versatilis
Ellin345]
Length = 343
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 18/164 (10%), Positives = 44/164 (26%), Gaps = 4/164 (2%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V V + + +Q G E + K L +V +
Sbjct: 49 TKPVARVNGTVLTERDLLREMYTIFPYAAQHNGVPKKME----PEMRKGALQMIVFEELV 104
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + D + A +F + +R+ ++EK ++L
Sbjct: 105 YQEAVRRKITFDPSIISKGEAEMRKQFPSQQEFDAWIVAQFGSRQAMHEKMRRTMLVQIL 164
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
+ +V V + + + + + ++
Sbjct: 165 LKKEVNDKSVVTDAQAKAFYEANSKQFDRPETFSIQTISIIPPQ 208
Score = 44.5 bits (102), Expect = 0.057, Method: Composition-based stats.
Identities = 21/208 (10%), Positives = 55/208 (26%), Gaps = 7/208 (3%)
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
D G A + + ++ V + +
Sbjct: 135 QEFDAWIVAQFGSRQAMHEKMRRTMLVQILLKKEVNDKSVVTDAQAKAFYEANSKQFDRP 194
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQL--VLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+ + ++ + + +E +A+ + +K + F + + +
Sbjct: 195 ETFSIQTISIIPPQGANPEVKKEADKRAHDAFKAAKATKTYEEFGLLAEKVSDDDWHVKM 254
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV----GPVQEKDK 589
+R + D + V I+ G +Y +F++ + K K
Sbjct: 255 GDRKAIDRASLPPDVVKAALVMKPGEVSDL-IQIGPNYTMFRLNAHTPAGRTPFGEVKAK 313
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + + L S L+ V
Sbjct: 314 LQEDMKKAKTEQLRGSFDKQLRQSAKVE 341
>gi|319898728|ref|YP_004158821.1| Peptidyl-prolyl cis-trans isomerase [Bartonella clarridgeiae 73]
gi|319402692|emb|CBI76238.1| Peptidyl-prolyl cis-trans isomerase [Bartonella clarridgeiae 73]
Length = 319
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 19/169 (11%), Positives = 37/169 (21%), Gaps = 17/169 (10%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+S VV+V + Q L + + L+ A
Sbjct: 36 TSVVVTVNGNPITSYDIQRRIAFLKLQQKQ-------------GNLAAQAKNELIDEALK 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ I+ +E V N + D LA+ + + + + +
Sbjct: 83 NNEIKRRNIEVSKDEVESAFKN----FALQNNMTVDQLNQMLAQTDVTVEHFKTYILGQM 138
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+V + A R P
Sbjct: 139 GWGRLVNARYQAEGGVLTEQETAHRILKNGGVKPSTNEYTLQRIIFVIP 187
>gi|169824179|ref|YP_001691790.1| putative peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC
29328]
gi|302380852|ref|ZP_07269315.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3]
gi|167830984|dbj|BAG07900.1| putative peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC
29328]
gi|302311347|gb|EFK93365.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3]
Length = 321
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 54/173 (31%), Gaps = 1/173 (0%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
L + + + S + V +G++ + + Q I +
Sbjct: 4 FLAIVLAMMMVMVTACSNKPNGAVAKIGKEYIYQKDVDKVMEDYKQYYGQDIFNPNTEQG 63
Query: 80 ARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
++ + KI+D L++ ++ ++D +E V E+ + G +KF +
Sbjct: 64 KEALKQIKPKIIDMLINEKIANKLMKDKKIEVSDKEVQAEVDKLQKQLGGADKFKEQLKK 123
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + E+ K LS+ + + N
Sbjct: 124 ENMTEQALKEQIEKQLKNKKLSQQFEKDFKPSDKEIKDEFDKNIDTYTQYNAD 176
>gi|52143135|ref|YP_083692.1| peptidylprolyl isomerase [Bacillus cereus E33L]
gi|51976604|gb|AAU18154.1| protein export protein [Bacillus cereus E33L]
Length = 283
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 123 TEKDVKDNYKPEMKVSHILIKDEKTAKE-VKEKVSNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD+ L
Sbjct: 182 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPYDEVKDQIRKDL 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V+D
Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKDADIKVNDK 271
>gi|257065468|ref|YP_003145140.1| parvulin-like peptidyl-prolyl isomerase [Slackia heliotrinireducens
DSM 20476]
gi|256793121|gb|ACV23791.1| parvulin-like peptidyl-prolyl isomerase [Slackia heliotrinireducens
DSM 20476]
Length = 438
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 19/197 (9%), Positives = 55/197 (27%), Gaps = 17/197 (8%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR--------SVGLDK 87
S + +V ++ NS + G ++ A + L
Sbjct: 41 SDTTGGVAATVNGVEIG----ENSITGYIEDFRSLNGLTEDAAWAEWMVNAGYTAEDLRS 96
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++++ V+ + Q E+ G+ D + ++ + + L GI
Sbjct: 97 EVINYYVNQTLVRQAAEENGVTVDSAEIDSQVETMKSNYE-----DEAAWDEALQSVGIQ 151
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+E ++ + + V G + + ++ A +
Sbjct: 152 SEEVYRSELELYAMEQALVPIVAGDAEPSEEDLLMYAQMYGPAYDGAKKSSHILFAADDE 211
Query: 208 PSNAVLTQWFEKYKDNY 224
+ + + ++
Sbjct: 212 ATAQQVLDQINNGEIDF 228
Score = 42.5 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 21/278 (7%), Positives = 74/278 (26%), Gaps = 18/278 (6%)
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
S + +D A + A ++ + + T + + + + +
Sbjct: 66 EDFRSLNGLTEDAAWAEWMVNAGYTAEDLRSEVINYYVNQTLVRQAAEENGVTVDSAEID 125
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
++ L V + + + + + + +
Sbjct: 126 SQVETMKSN--YEDEAAWDEALQSVGIQSEEVYRSELELYAMEQALVPIVAGDAEPSEED 183
Query: 479 LEEVLTDVKKDWKTVKTAEEV------SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
L + K + + + A Q++ + + +F D +
Sbjct: 184 LLMYAQMYGPAYDGAKKSSHILFAADDEATAQQVLDQINNGEIDFADAAAQYSIDTASAA 243
Query: 533 QINRMDNEN-KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF---------KVTNSKVG 582
+ + F + + + V + +++ +VT+ +
Sbjct: 244 DGGNVGWDALNSFVTEYTDALSNLEEGQVSGLVTSDYGIHIIKCTEVFTCPEEVTSIEEL 303
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
P + +D + Y++ + + + ++D
Sbjct: 304 PQELQDLIMDYVSSSAQDMAYQEWFSSYQEGADIVIND 341
>gi|53719054|ref|YP_108040.1| putative exported isomerase [Burkholderia pseudomallei K96243]
gi|76809971|ref|YP_333855.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Burkholderia pseudomallei 1710b]
gi|126452457|ref|YP_001066604.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 1106a]
gi|167738143|ref|ZP_02410917.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 14]
gi|167815330|ref|ZP_02447010.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 91]
gi|167823737|ref|ZP_02455208.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 9]
gi|167845286|ref|ZP_02470794.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei B7210]
gi|167910520|ref|ZP_02497611.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 112]
gi|226197257|ref|ZP_03792834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei Pakistan 9]
gi|242315812|ref|ZP_04814828.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 1106b]
gi|254189167|ref|ZP_04895678.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei Pasteur 52237]
gi|254198249|ref|ZP_04904671.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei S13]
gi|254259998|ref|ZP_04951052.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 1710a]
gi|254297327|ref|ZP_04964780.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 406e]
gi|52209468|emb|CAH35420.1| putative exported isomerase [Burkholderia pseudomallei K96243]
gi|76579424|gb|ABA48899.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
pseudomallei 1710b]
gi|126226099|gb|ABN89639.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 1106a]
gi|157807500|gb|EDO84670.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 406e]
gi|157936846|gb|EDO92516.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei Pasteur 52237]
gi|169654990|gb|EDS87683.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei S13]
gi|225930636|gb|EEH26646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei Pakistan 9]
gi|242139051|gb|EES25453.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 1106b]
gi|254218687|gb|EET08071.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 1710a]
Length = 259
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 10/180 (5%)
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-------- 498
+ P K V + + I++ + E+ K E
Sbjct: 81 NRPDVKAQIVVAQQTAVLRALIEDFLKKNQPSDTELKARYDDLVKNAGGREYHLHHILVD 140
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPV 557
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 141 NEQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQK 199
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + ++ + Q M + L + L+ Q +
Sbjct: 200 GQMTDAPVKTQFGWHIIRVDDVRSITPPPFEQVKQQIAQQMVQQKLQAFEESLRQQAKIQ 259
Score = 37.9 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + Q + L++ + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADAMIAQLVQQGQQ-----------DTPQLEQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIKRGI 79
>gi|284043450|ref|YP_003393790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei
DSM 14684]
gi|283947671|gb|ADB50415.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Conexibacter woesei
DSM 14684]
Length = 379
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 27/225 (12%), Positives = 51/225 (22%), Gaps = 50/225 (22%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFIN 58
M IR A ++ P + S + S+ + SV V + + +
Sbjct: 1 MAHSIRA------ALTVGALVLCPLAVSACGGDDSSGNDVPSNAIASVDGTPVTKAEYEH 54
Query: 59 SWKQELGMISQKIGFVVNSERAR--------------------------------SVGLD 86
++ + V+ + L
Sbjct: 55 LYEVNAKGAAGGGSAVIPDPPSYTACAARLARQAAAARGRGRPTESQLVAQCRQLDEALR 114
Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD-VFVSRLAREG 145
+ + LV LD E +G+E V K F L + G
Sbjct: 115 NRSVAQLVQMVWLDGETERLGIEVTDADVERA---------KRATFPRAGDMQRTLRQLG 165
Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+ E++ T + A +
Sbjct: 166 MTERDVEFQLRFNQLSTRLTEHLQRRPVDVGDAEISAYYARNREQ 210
>gi|83646167|ref|YP_434602.1| parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
2396]
gi|83634210|gb|ABC30177.1| Parvulin-like peptidyl-prolyl isomerase [Hahella chejuensis KCTC
2396]
Length = 316
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 24/187 (12%), Positives = 50/187 (26%), Gaps = 15/187 (8%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
++ +FL L G A + + V V ++ ++
Sbjct: 4 HRTSFPKFVFLAALTGSLA--GCGGAGEATDATQVVAKVNGSEISIHQLN-------AIL 54
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+++ V+S+ AR+ + LD LV ++ L+ V I
Sbjct: 55 AKQPAQGVSSDTARA-----RALDELVEQQVAYDKAVELKLDRSPD-VVMAIESMKKSII 108
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
+ + + Y +H R + LL +
Sbjct: 109 ARAYLQQVIGALSQPSQEEIHQYYQEHPALFAERKLYSLQEIAIEPRDELLAPLRNKVGN 168
Query: 188 ENRSVDY 194
+ D
Sbjct: 169 AGQLEDI 175
>gi|21221540|ref|NP_627319.1| lipoprotein [Streptomyces coelicolor A3(2)]
gi|256787270|ref|ZP_05525701.1| lipoprotein [Streptomyces lividans TK24]
gi|289771165|ref|ZP_06530543.1| lipoprotein [Streptomyces lividans TK24]
gi|10241784|emb|CAC09542.1| putative lipoprotein [Streptomyces coelicolor A3(2)]
gi|289701364|gb|EFD68793.1| lipoprotein [Streptomyces lividans TK24]
Length = 215
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVGLDKKILDNLVSGATL 99
VG Q++ + N + + ++ AR+ L + L +V L
Sbjct: 33 AAAVVGDQRITVAQLENRVDEVREAQRAAVPDDTQYQQVVARTGTLTRDTLHGMVLDRVL 92
Query: 100 DQFIEDIGLEADHGRVWGE 118
+ +D G+ V
Sbjct: 93 HRAAQDAGVTVSRKEVQDM 111
>gi|302551954|ref|ZP_07304296.1| lipoprotein [Streptomyces viridochromogenes DSM 40736]
gi|302469572|gb|EFL32665.1| lipoprotein [Streptomyces viridochromogenes DSM 40736]
Length = 215
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 18/187 (9%), Positives = 46/187 (24%), Gaps = 6/187 (3%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQ--KIGFVVNSERARSVGLDKKILDNLVSGATL 99
VG Q++ S + + AR+ L + L +V L
Sbjct: 33 AAAVVGGQRITVSQLEERVGEVRAAQRAAVQNDAQYQQAIARTGTLTRDTLHTMVLDRVL 92
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ E+ G+ E+ + + + + L + GI + ++ L
Sbjct: 93 HRAAENAGVTVT----RREMQEMRSGLEEQAGGAKALETTWLQQYGIPPQRLEENLRLQL 148
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ ++ N ++ + + +
Sbjct: 149 EAQKLAEKLGTDTSRPEFWKALSEASEDLNVDLNPRYGTWNVQKSSRADAKTPWVRDVTA 208
Query: 220 YKDNYRA 226
+
Sbjct: 209 AQTQQSM 215
>gi|150395986|ref|YP_001326453.1| SurA domain-containing protein [Sinorhizobium medicae WSM419]
gi|150027501|gb|ABR59618.1| SurA domain [Sinorhizobium medicae WSM419]
Length = 315
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 33/295 (11%), Positives = 66/295 (22%), Gaps = 18/295 (6%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ V + + L + + + + SS V V + +
Sbjct: 3 GKNSIVRVLSAIALAGALSLATGTATTATAAASSVEVVVNGTVITSGDVAKRV--AFLRL 60
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
++ G + LV I + V AR
Sbjct: 61 QRQSGGAA------------EAKQQLVDEVLKRAEIARVQQSVSTDEVDAAFAR----FA 104
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
NK S + L + G+ + + +S VV G + +
Sbjct: 105 SGNKLSPEQLGKILEQAGVGIDHFKQYIAVQMSWPRVVNFRYGNASRLSGGDLVKRMMQG 164
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
+ V + S + + N ++
Sbjct: 165 GGNKPVTTEYFLQQVIFVIPESKRGAITAKRQAEANASRSKFPGCDTSKAFAANYRDVSI 224
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
S + A+ K + ++ E KK + A E
Sbjct: 225 RSLGRILAQQLPEDWKPLVEKAGDSMTTGTRVTEKGVEYLAICKKRQVNDDAAAE 279
>gi|332284989|ref|YP_004416900.1| putative peptidyl-prolyl cis-trans isomerase [Pusillimonas sp.
T7-7]
gi|330428942|gb|AEC20276.1| putative peptidyl-prolyl cis-trans isomerase [Pusillimonas sp.
T7-7]
Length = 258
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 15/166 (9%), Positives = 53/166 (31%), Gaps = 12/166 (7%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ V+ + + + + + D A++ K ++++ K ++ K+
Sbjct: 93 ILVRALMADHLKKNPVTDAKIQAEYDKIKKLQADKQEYKVRHILVKDQKAAEDLTAAIKS 152
Query: 524 LGASLLTTNQINRMDNENKFFG------------YDGISQVFSGPVEMVKCFPIENGLSY 571
+ + + +D + G + V + P+++ +
Sbjct: 153 KKVTFEAAAKKDSIDPGSGKNGGDLGWAPSTNYVPEFADAVEKLKKGQMTDKPVQSQFGW 212
Query: 572 VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ +V +++ E + + +M+ + L L +
Sbjct: 213 HIIQVDDTRDVKFPELAEVKPQIEEMLRQQQLAEFQDSLMKNADIK 258
Score = 37.9 bits (85), Expect = 5.4, Method: Composition-based stats.
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 12/80 (15%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
TV +V + + + +Q + L ++ +V+
Sbjct: 20 QTVATVNGKAITQDKLDQFVALLIEQGAQ-----------DTPELRTQVKQEMVNRLVAV 68
Query: 101 QFIEDIGLEADHGRVWGEIA 120
Q E G++ V EI
Sbjct: 69 QAAEKAGID-KQAAVKQEIE 87
>gi|229139028|ref|ZP_04267605.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26]
gi|228644383|gb|EEL00638.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST26]
Length = 288
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 128 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 186
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 187 AGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 245
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 246 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 283
>gi|311106144|ref|YP_003978997.1| PPIC-type PPIASE domain-containing protein 2 [Achromobacter
xylosoxidans A8]
gi|310760833|gb|ADP16282.1| PPIC-type PPIASE domain protein 2 [Achromobacter xylosoxidans A8]
Length = 253
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 40/138 (28%), Gaps = 4/138 (2%)
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
+ + + + AN ++ E ++ F ++ + +
Sbjct: 98 DHILFQVTPGVNLDMLRAHANVVLAELLEDPSRFAEVAREQSNCPSAALGGSLGQLGRGD 157
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD----KFISYLTQMMN 599
+ VF+ P + +E + +VT G +Q + + + L+ M
Sbjct: 158 TVPEFERAVFALPAGGLLPQLLETRHGLHIVRVTRRIEGRMQPYEHVAAQIATALSSMSR 217
Query: 600 KDLLDSVIAYLKSQYSVT 617
L + +
Sbjct: 218 DTAWRQYAKLLVERADIQ 235
>gi|229095750|ref|ZP_04226729.1| Foldase protein prsA 2 [Bacillus cereus Rock3-29]
gi|229101848|ref|ZP_04232562.1| Foldase protein prsA 2 [Bacillus cereus Rock3-28]
gi|229114700|ref|ZP_04244114.1| Foldase protein prsA 2 [Bacillus cereus Rock1-3]
gi|228668765|gb|EEL24193.1| Foldase protein prsA 2 [Bacillus cereus Rock1-3]
gi|228681431|gb|EEL35594.1| Foldase protein prsA 2 [Bacillus cereus Rock3-28]
gi|228687583|gb|EEL41482.1| Foldase protein prsA 2 [Bacillus cereus Rock3-29]
Length = 285
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 17/154 (11%), Positives = 58/154 (37%), Gaps = 11/154 (7%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V K + K + A ++ + G +F ++ K LL+ + +
Sbjct: 125 TEKDVKDHYKPEIKASHILVSDENAAKEIKKKLD-AGASFEELAKQESQDLLSKEKGGDL 183
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596
+ + + + V + P+++ Y + K+T+ K ++ D+ + +
Sbjct: 184 GYFNSGTMAPEFETAAYKLKVGEISN-PVKSTNGYHIIKLTDKK--DLKPYDEVKDSIRK 240
Query: 597 MMNKD------LLDSVIAYLKSQYSVTVHDNLIQ 624
+ ++ ++ + ++ ++D+ +
Sbjct: 241 NLEEERIADPTFSQKLLQDELKKANIKINDSELN 274
>gi|71908519|ref|YP_286106.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
aromatica RCB]
gi|71848140|gb|AAZ47636.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dechloromonas
aromatica RCB]
Length = 263
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 19/180 (10%), Positives = 57/180 (31%), Gaps = 10/180 (5%)
Query: 447 DDPLSKDHTVALPDGSYMW-VQIKESIPARDRKLEEVLTDVK--------KDWKTVKTAE 497
D + + L + + + + + A ++ + + ++K
Sbjct: 85 DKAPNVQGQIELAKQAVLIRAYLSDYVKAHPISDAQLKAEYELIKNNLGSTEYKARHVLV 144
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
E A ++ + K G+ F ++ K + + +
Sbjct: 145 EKEDDAKAIIAKLDK-GEKFSELAKQSKDPGSKDKGGELGWSSPNAYVKPFGEALGKLKK 203
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P+++ Y V ++ +S+ D+ L Q + +++++ L+ + V
Sbjct: 204 GEYTKTPVKSDFGYHVIQLDDSRPMTPPPFDQVKPQLQQRAGQQQVENLVKELRGKAKVD 263
Score = 46.0 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 11/89 (12%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ + +S + + +V Q + + + ++ G + E
Sbjct: 7 LAALLVAGAIVSAPALAADKAKAFATVNGQPISQTVYNAFIAEQQAQ-----GAPDSPE- 60
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGL 108
L + + LV L Q + GL
Sbjct: 61 -----LQGAVKEELVRREILAQEAKKKGL 84
>gi|251795790|ref|YP_003010521.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
JDR-2]
gi|247543416|gb|ACT00435.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
JDR-2]
Length = 343
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 44/131 (33%), Gaps = 1/131 (0%)
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
E+ + + E K G +F + K + L N + ++ + Q +
Sbjct: 210 REQAYKQITEAQQEL-KAGLSFEEAAKKYTENGLRDNTVIIGGQDSPLQADAVLKQAAAR 268
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ G + + ++ N D + L + + + + +A + +
Sbjct: 269 LEIGEYSPVLDCGSGFSIIRLVNRTDNFSVPLDSVKAQLQEEVLQLKFQAYLADQVKKRN 328
Query: 616 VTVHDNLIQRY 626
V + ++ +
Sbjct: 329 VQIKQDVYDQL 339
Score = 41.4 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
W+A L++ + S SGS + +VG Q + F + G ++
Sbjct: 3 WIAGGVLLLASAGLAVAWPQPTGGSPSGSEAIATVGGQPISLDEFRLYMDKAKGEVTNYF 62
Query: 72 GFVVNSERARSV------------GLDKKILDNLVSGATLDQFIEDIGLEAD 111
+E + L K+ + + V G TL + GL
Sbjct: 63 SVTYGAEDRKDYWTSAFGGERPIDRLKKQAMKDAVEGKTLQLLAVENGLAES 114
>gi|228914927|ref|ZP_04078532.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228927396|ref|ZP_04090453.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933628|ref|ZP_04096478.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228826088|gb|EEM71871.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832292|gb|EEM77872.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228844723|gb|EEM89769.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
Length = 288
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 128 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 186
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 187 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 245
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 246 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 283
>gi|237749474|ref|ZP_04579954.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
formigenes OXCC13]
gi|229380836|gb|EEO30927.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
formigenes OXCC13]
Length = 256
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 3/150 (2%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
E DR ++ + K + ++ + A+ ++ + SK +F + +
Sbjct: 109 NEVKAEYDRLVKMQKGQTEYHVKHILVKDKAT--ADSIIKQVSKNPASFEKLAQEKSLDK 166
Query: 529 LTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ + M + S V P++ Y + KV +S+ +
Sbjct: 167 ASAARGGDMGWATAGDLVKPFSDAMVSLKKGQVSKTPVQTEFGYHIIKVVDSQKVKIPTY 226
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ L M L + +
Sbjct: 227 EQIKPKLKASMQYRKWQEYEMGLMKEAKIQ 256
Score = 37.9 bits (85), Expect = 5.8, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V V + +P S + K+ + G E L I L+ G L
Sbjct: 18 QNVAVVNGKAIPSSYSDEAVKEVVKQ-----GGKDTPE------LRNNIKTQLIVGEVLL 66
Query: 101 QFIEDIGLEADHG 113
Q E L +
Sbjct: 67 QEAEKQNLASTDA 79
>gi|157827644|ref|YP_001496708.1| hypothetical protein A1I_06775 [Rickettsia bellii OSU 85-389]
gi|157802948|gb|ABV79671.1| hypothetical protein A1I_06775 [Rickettsia bellii OSU 85-389]
Length = 294
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 17/165 (10%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K L+++ V F +++ S+ V V + + + F + + +
Sbjct: 1 MKKLLLIITVFFTCSAVAE------TSNIVALVNNEPITLNEF-----RARKKMIMALNN 49
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
V A++ L + +L+ + L Q+ D E + I NK
Sbjct: 50 VEEVTPAQNKQLSDIAIKSLIDESLLFQYYGDK--EISQEEIDNAIKSIE----DRNKMP 103
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
H + L +N +I L + +V+ ++ SN
Sbjct: 104 HGSLLQYLKSISVNPDSFISQIKSELIKMNVLSGLSRSVQVSNKE 148
>gi|91205025|ref|YP_537380.1| hypothetical protein RBE_0210 [Rickettsia bellii RML369-C]
gi|122426012|sp|Q1RK23|Y210_RICBR RecName: Full=Uncharacterized protein RBE_0210; Flags: Precursor
gi|91068569|gb|ABE04291.1| unknown [Rickettsia bellii RML369-C]
Length = 294
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 56/165 (33%), Gaps = 17/165 (10%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K L+++ V F +++ S+ V V + + + F + + +
Sbjct: 1 MKKLLLIITVFFTCSAVAE------TSNIVALVNNEPITLNEF-----RARKKMIMALNN 49
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
V A++ L + +L+ + L Q+ D E + I NK
Sbjct: 50 VEEVTPAQNKQLSDIAIKSLIDESLLFQYYGDK--EISQEEIDNAIKSIE----DRNKMP 103
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
H + L +N +I L + +V+ ++ SN
Sbjct: 104 HGSLLQYLKSRSVNPDSFISQIKSELIKMNVLSGLSRSVQVSNKE 148
>gi|315453271|ref|YP_004073541.1| hypothetical protein HFELIS_08670 [Helicobacter felis ATCC 49179]
gi|315132323|emb|CBY82951.1| putative periplasmic protein [Helicobacter felis ATCC 49179]
Length = 346
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 19/168 (11%), Positives = 44/168 (26%), Gaps = 23/168 (13%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
++V + + ++ ++ L+
Sbjct: 91 GGIAITVNNDPITIYQIET-------------------QEKEHHISRQQAVNALILQRIQ 131
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q I+ + ++ + ++ EI + N F+ LA EGIN Y K L
Sbjct: 132 AQEIKRLKIDIEDDKIDAEIENI----ARHNGMDMQDFLRTLASEGINPTTYKAQLKKQL 187
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+++ + +N + + D
Sbjct: 188 ETRELLRNILLFNTNTNSETKMREYYNAHKSEFSVPSEIITIRYTAQD 235
>gi|206973718|ref|ZP_03234636.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus H3081.97]
gi|217959835|ref|YP_002338389.1| peptidylprolyl isomerase [Bacillus cereus AH187]
gi|206747874|gb|EDZ59263.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus H3081.97]
gi|217064695|gb|ACJ78945.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH187]
Length = 283
Score = 48.7 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 123 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 182 AGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 241 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 278
>gi|49185187|ref|YP_028439.1| peptidylprolyl isomerase [Bacillus anthracis str. Sterne]
gi|49479990|ref|YP_036442.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|165870489|ref|ZP_02215143.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0488]
gi|167633046|ref|ZP_02391372.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0442]
gi|167639670|ref|ZP_02397940.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0193]
gi|170687085|ref|ZP_02878304.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0465]
gi|170706725|ref|ZP_02897184.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0389]
gi|177649682|ref|ZP_02932684.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0174]
gi|190565511|ref|ZP_03018431.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis Tsiankovskii-I]
gi|196040038|ref|ZP_03107341.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus NVH0597-99]
gi|218903473|ref|YP_002451307.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH820]
gi|227814851|ref|YP_002814860.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. CDC 684]
gi|229604551|ref|YP_002866676.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0248]
gi|254684916|ref|ZP_05148776.1| peptidylprolyl isomerase [Bacillus anthracis str. CNEVA-9066]
gi|254722324|ref|ZP_05184112.1| peptidylprolyl isomerase [Bacillus anthracis str. A1055]
gi|254737363|ref|ZP_05195067.1| peptidylprolyl isomerase [Bacillus anthracis str. Western North
America USA6153]
gi|254743452|ref|ZP_05201137.1| peptidylprolyl isomerase [Bacillus anthracis str. Kruger B]
gi|254751679|ref|ZP_05203716.1| peptidylprolyl isomerase [Bacillus anthracis str. Vollum]
gi|254760198|ref|ZP_05212222.1| peptidylprolyl isomerase [Bacillus anthracis str. Australia 94]
gi|301053856|ref|YP_003792067.1| peptidylprolyl isomerase [Bacillus anthracis CI]
gi|46396831|sp|Q81QT1|PRSA3_BACAN RecName: Full=Foldase protein prsA 3; Flags: Precursor
gi|49179114|gb|AAT54490.1| protein export protein prsA [Bacillus anthracis str. Sterne]
gi|49331546|gb|AAT62192.1| protein export protein prsA [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|164713644|gb|EDR19167.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0488]
gi|167512379|gb|EDR87755.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0193]
gi|167531858|gb|EDR94523.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0442]
gi|170128456|gb|EDS97324.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0389]
gi|170669136|gb|EDT19880.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0465]
gi|172084756|gb|EDT69814.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0174]
gi|190563538|gb|EDV17503.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis Tsiankovskii-I]
gi|196029297|gb|EDX67901.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus NVH0597-99]
gi|218538215|gb|ACK90613.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH820]
gi|227007172|gb|ACP16915.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. CDC 684]
gi|229268959|gb|ACQ50596.1| peptidylprolyl isomerase PrsA3 [Bacillus anthracis str. A0248]
gi|300376025|gb|ADK04929.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI]
Length = 283
Score = 48.3 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 123 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 182 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 241 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 278
>gi|84514873|ref|ZP_01002236.1| PPIC-type PPIASE domain protein [Loktanella vestfoldensis SKA53]
gi|84511032|gb|EAQ07486.1| PPIC-type PPIASE domain protein [Loktanella vestfoldensis SKA53]
Length = 270
Score = 48.3 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 13/134 (9%), Positives = 45/134 (33%), Gaps = 7/134 (5%)
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
+ G+ F D+ + + + N + + + V + ++
Sbjct: 134 ATEDEANAAKAQLDAGEAFADVAAAVSTDVTSANGGDLGWFGAGAMVEEFETAVMALEID 193
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
+ P E + + +T+ + P ++ + L+ + + + + + L + +V
Sbjct: 194 EI-SDPFETQFGWHIVTLTDQRARPAPTFEQVVQQLSAELQEAAVIAYLDELSAATTVER 252
Query: 619 ------HDNLIQRY 626
++I +
Sbjct: 253 PEEGAFDPSVINQV 266
>gi|229184548|ref|ZP_04311751.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1]
gi|228598959|gb|EEK56576.1| Foldase protein prsA 1 [Bacillus cereus BGSC 6E1]
Length = 288
Score = 48.3 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 128 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 186
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 187 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 245
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 246 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 283
>gi|268316633|ref|YP_003290352.1| hypothetical protein Rmar_1072 [Rhodothermus marinus DSM 4252]
gi|262334167|gb|ACY47964.1| hypothetical protein Rmar_1072 [Rhodothermus marinus DSM 4252]
Length = 590
Score = 48.3 bits (112), Expect = 0.003, Method: Composition-based stats.
Identities = 58/609 (9%), Positives = 128/609 (21%), Gaps = 73/609 (11%)
Query: 41 STVVSVGRQK----VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
V VG + S + + G K+ LD L++
Sbjct: 33 PVVAEVGADSLRITITASDLNDFLE----------GRPDWLATLPREEAYKRALDELITQ 82
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
A + I L P F + + + V AR ++ +
Sbjct: 83 AL-----KRIDLFQSGR------VNDPAFRQRVARIVTEELVIAYARHRYEDRYLNEEAI 131
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
+ + ++ V+ + + V+
Sbjct: 132 RREHQNMGRVVYYRQFVFPKPADASEAELDSIRAVVERVREALASGTPFDQVAQEVIRG- 190
Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
+ E +S ++A E + +
Sbjct: 191 SIPGQITGYGVERYLTWNYAVVNPRANILFRLSPGAVRAFEEPGRFTVAQVTRIEKRPVP 250
Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
Q + A + L DS
Sbjct: 251 PLEQVREQIIEALNRWYAPAATEAFRREWMG-----------------LVDSTTLRWNLS 293
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
++ S + + + R + ++ +
Sbjct: 294 ALNKLVAWSNTPGFYQGAYRDTIAQYLKRHEDALLVGDARGGIRISDLPRIFEEVLTLQR 353
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV----FGKDDPLSK 452
+ + ++ + + + P L + F +
Sbjct: 354 SKNYTTRYIQDFLLEALRTDRLAERARALGYMRKVWRPDTPSPLLAMEMVRFYDQQHIES 413
Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
+ + Q + +L V T++ A + +
Sbjct: 414 RLPKPTEEALRAFYQ--AHAESLFYQLPRVYTEIIVRPTRE---------AIDSIRAKIQ 462
Query: 513 EGKNFRDIGKNLGASL----LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP---- 564
G F I FS V +
Sbjct: 463 RGVPFEKASHRRLLRAYERTREGKIITWNKRTE---PPYFGELAFSLKVGEIAGPIEYQD 519
Query: 565 IENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
+ G Y + +VT + +D+ + + L A L+ +Y V VH
Sbjct: 520 VREGRRYALIRVTKRLEEKQLTFEEARDRVEKAFLEHHRERLAREEAARLRERYPVRVHQ 579
Query: 621 NLIQRYLDG 629
++ + L+G
Sbjct: 580 VVLLQMLNG 588
>gi|288803875|ref|ZP_06409300.1| putative PPIC-type PPIASE domain protein [Prevotella melaninogenica
D18]
gi|288333640|gb|EFC72090.1| putative PPIC-type PPIASE domain protein [Prevotella melaninogenica
D18]
Length = 488
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 48/407 (11%), Positives = 111/407 (27%), Gaps = 35/407 (8%)
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK--EKYFSPE 268
L+ + +++ E K + +++A
Sbjct: 93 DTLSSFKKEFLSYRNQQVRPTFITDADVEAEGHKLYREAQQQVEANGGMWNCAHILIGLY 152
Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVS 324
++ ++ AD + +L+ G F +LA++ ++ G K
Sbjct: 153 QNADKEAAEAAKQLADSLYNALRGGADFAELAKKYSTDVNSAMNGGQLLHLQKGQTVPE- 211
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ K G+ + + FGY I + +++ ++ +I + + E++
Sbjct: 212 -FEKALFALKPGEISAPVLSPFGYHIIKMGGR--ESFPTYETLRPEIMQYIEMQGLREQI 268
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ T + K+ S++ + Y + LL
Sbjct: 269 IDQKLDSIVESEGKTVTQDQLLDRKLASLEEKDASMKNLIRE--------YHDGLLMIEM 320
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+ K +Y K+ R + KT + E V +
Sbjct: 321 SNREVWDKAAKDEKALEAYFRKHKKQYKWTEPRFKG-----IAYHVKTKEDVEAVKACVR 375
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
+ K + + I R +N D VF +
Sbjct: 376 DVPFN-QWAEKLRDKFNADNTIRIRVEKGIFRKG-DNALVDRD----VFGAKTTVKPV-- 427
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
Y + V K+ + + + +DL + + L+
Sbjct: 428 ----NGYPIDAVFGKKIKAPEGMEDVRDLVVSNYQEDLEKAWVEALR 470
Score = 37.1 bits (83), Expect = 9.0, Method: Composition-based stats.
Identities = 51/496 (10%), Positives = 128/496 (25%), Gaps = 50/496 (10%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K+ L L + + T++++ Q V S F S+ +
Sbjct: 17 FKVILSALLLS-------TTMAYGQTDPTIMTINGQPVSRSEFEYSYNKN---------- 59
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
N+E + +D ++ Q + + F N+
Sbjct: 60 --NAEGVIDKKSVDEYVDLFINYKLKVQAAL-------DAHLDTLSSFKKEFLSYRNQQV 110
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
F++ E K Y + ++ + + + +A +
Sbjct: 111 RPTFITDADVEAEGHKLYREAQQQVEANGGMWNCAHILIGLYQNADKEAAEAAKQLADSL 170
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
Y L A + ++ + + ++ + E+
Sbjct: 171 YNALRGGADFA------ELAKKYSTDVNSAMNGGQLLHLQKGQTVPEFEKALFALKPGEI 224
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
A + + E Q ++ Q+ +++ S+ +
Sbjct: 225 SAPVLSPFGYHIIKMGGRES--FPTYETLRPEIMQYIEMQGLREQIIDQKLDSIVESEGK 282
Query: 314 SFSKEYIPDV-----SLADSIFSLAKKGDFTP--VIHGSFGYVIAHVSNIKPSFTVSFQE 366
+ +++ + D D+ + +I S V + + + F++
Sbjct: 283 TVTQDQLLDRKLASLEEKDASMKNLIREYHDGLLMIEMSNREVWDKAAKDEKALEAYFRK 342
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
KK K + + +E A + EK+ D D
Sbjct: 343 HKKQYKWTEPRFKGIAYHVKTKEDVEAVKACVRDVPFNQWAEKLR-------DKFNADNT 395
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
+ + + +D +K + Y + +E+V V
Sbjct: 396 IRIRVEKGIFRKGDNALVDRDVFGAKTTVKPV--NGYPIDAVFGKKIKAPEGMEDVRDLV 453
Query: 487 KKDWKTVKTAEEVSSK 502
+++ V +
Sbjct: 454 VSNYQEDLEKAWVEAL 469
>gi|194018008|ref|ZP_03056615.1| YacD [Bacillus pumilus ATCC 7061]
gi|194010345|gb|EDW19920.1| YacD [Bacillus pumilus ATCC 7061]
Length = 302
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 19/149 (12%), Positives = 46/149 (30%), Gaps = 27/149 (18%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
+R +R I ++++ +I +S A + + S+G++KV ++
Sbjct: 1 MRLKARVVWTFILVLLMINAVVIAYVLTKSQMSQASSNGKSGEEIASIGKEKVTRQEWLK 60
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ G K L+ +++ +DQ ++ LE + E
Sbjct: 61 KMEDRYG---------------------KATLEQMINQKVVDQLAKENKLEVSSKEINRE 99
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGIN 147
+ + H +
Sbjct: 100 LLMLKAVSNNFYEDGHTSEKDWTEQIRYQ 128
>gi|320010364|gb|ADW05214.1| putative lipoprotein [Streptomyces flavogriseus ATCC 33331]
Length = 218
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 19/191 (9%), Positives = 54/191 (28%), Gaps = 6/191 (3%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
L + + L A S + VG ++ ++ +Q+ +
Sbjct: 9 LALSAATLVAAPLLAACGSEAHPGAAAVVGGDRIDVATVQAQAADV--RTAQQKSEQSDE 66
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+S L + L L+ G LD+ +D G+ + ++ + +
Sbjct: 67 LVTKSGQLTRVKLSGLIFGRVLDRAAKDAGVSVSRKEI-QQLRGVAAEQSGGEEGVRTLM 125
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
L + + + + + + G ++ + + ++++ V
Sbjct: 126 ---LEQRWVAPGQIEASLRQEVQLQKLAGALGADLQSPTGVQAVGQALTEASKALHIDVN 182
Query: 198 NNRHVPAIADP 208
Sbjct: 183 PRYGSWDNKKV 193
>gi|225575736|ref|ZP_03784346.1| hypothetical protein RUMHYD_03829 [Blautia hydrogenotrophica DSM
10507]
gi|225037049|gb|EEG47295.1| hypothetical protein RUMHYD_03829 [Blautia hydrogenotrophica DSM
10507]
Length = 419
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 26/324 (8%), Positives = 78/324 (24%), Gaps = 19/324 (5%)
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA---HV 353
+A + +S L ++ + + +
Sbjct: 68 KTVATVDKEEISMGVLSFMTRYQQAQTAQMYMSMLGSDPSSMWDQVEDEKKGTTYGDSLR 127
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ ++ +TK ++ + + E+ +K V
Sbjct: 128 DDALEQLEEMCLLKIHADEYEVTVTKEEQEKIQRAAKQFMEDNSEEVKSELVVSQKDVER 187
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
L L + K + + A E
Sbjct: 188 FLELTTYYQKMQEPIKADADMNVTDEEAAQTTVTYTKVDPPDTEAT--------TDEEKE 239
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
++ ++ T ++ V E+ A ++ ++ + ++ + +
Sbjct: 240 DSGQEEKDAKTKAQEILDQVLATEDADMDAIAKSVD-----EDLSALSESFSTNEAEEEE 294
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
+ V V I++G SY V ++ + +
Sbjct: 295 DETDTST-GNLPDAVKEAVKGLQDGEVVSSLIQDGDSYYVVRLD--SAFDQEATENQKDS 351
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVT 617
+ ++L D + + + ++
Sbjct: 352 IISERKQELYDDTVEEWRDKADIS 375
Score = 42.9 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 15/129 (11%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFS--SFINSWKQEL--GMISQK 70
+I + L + GL+ + G TV +V ++++ SF+ ++Q M
Sbjct: 43 RIIVAALTGAIALSGLAGC-GQLDGGKTVATVDKEEISMGVLSFMTRYQQAQTAQMYMSM 101
Query: 71 IGFVVNS--ERARSV--------GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+G +S ++ L L+ L L ++ +
Sbjct: 102 LGSDPSSMWDQVEDEKKGTTYGDSLRDDALEQLEEMCLLKIHADEYEVTVTKEEQEKIQR 161
Query: 121 RSPLFHGKD 129
+ F +
Sbjct: 162 AAKQFMEDN 170
>gi|149194292|ref|ZP_01871389.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Caminibacter
mediatlanticus TB-2]
gi|149135467|gb|EDM23946.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Caminibacter
mediatlanticus TB-2]
Length = 292
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 1/135 (0%)
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKE-GKNFRDIGKNLGASLLTTNQINRMDNENK 542
+K VK + N+L K + F ++ K K
Sbjct: 152 PQIKARHILVKDEKLAKKLINELKGLKGKALEEKFAELAKKYSIGPSKVQGGELGWFSPK 211
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
+ S + P++ Y + V K +K + +
Sbjct: 212 QMVPEFAKAAESLKPGEITLKPVKTRFGYHIILVEGKKSNTYIPYEKVKDQIIGYLKNQK 271
Query: 603 LDSVIAYLKSQYSVT 617
L + LK Q +
Sbjct: 272 LKKELETLKKQEKIK 286
>gi|53723651|ref|YP_103096.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Burkholderia mallei ATCC 23344]
gi|121601461|ref|YP_993254.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Burkholderia mallei SAVP1]
gi|124384406|ref|YP_001029302.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Burkholderia mallei NCTC 10229]
gi|126440095|ref|YP_001059336.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 668]
gi|126450119|ref|YP_001080762.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Burkholderia mallei NCTC 10247]
gi|134277391|ref|ZP_01764106.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 305]
gi|166998724|ref|ZP_02264578.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei PRL-20]
gi|167719141|ref|ZP_02402377.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
pseudomallei DM98]
gi|167902279|ref|ZP_02489484.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
pseudomallei NCTC 13177]
gi|217421758|ref|ZP_03453262.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 576]
gi|237812660|ref|YP_002897111.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei MSHR346]
gi|238562190|ref|ZP_00440767.2| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei GB8 horse 4]
gi|254177766|ref|ZP_04884421.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei ATCC 10399]
gi|254179444|ref|ZP_04886043.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 1655]
gi|254200043|ref|ZP_04906409.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei FMH]
gi|254206378|ref|ZP_04912730.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei JHU]
gi|254358208|ref|ZP_04974481.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei 2002721280]
gi|52427074|gb|AAU47667.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei ATCC 23344]
gi|121230271|gb|ABM52789.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei SAVP1]
gi|124292426|gb|ABN01695.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei NCTC 10229]
gi|126219588|gb|ABN83094.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 668]
gi|126242989|gb|ABO06082.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei NCTC 10247]
gi|134251041|gb|EBA51120.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 305]
gi|147749639|gb|EDK56713.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei FMH]
gi|147753821|gb|EDK60886.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei JHU]
gi|148027335|gb|EDK85356.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei 2002721280]
gi|160698805|gb|EDP88775.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei ATCC 10399]
gi|184209984|gb|EDU07027.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 1655]
gi|217395500|gb|EEC35518.1| peptidyl-prolyl cis-trans isomerase family protein [Burkholderia
pseudomallei 576]
gi|237503368|gb|ACQ95686.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
pseudomallei MSHR346]
gi|238523045|gb|EEP86486.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei GB8 horse 4]
gi|243065078|gb|EES47264.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
mallei PRL-20]
Length = 259
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 10/180 (5%)
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-------- 498
+ P K V + + I++ + E+ K E
Sbjct: 81 NRPDVKAQIVVAQQTAVLRALIEDFLKKNQPSDTELKARYDDLVKNAGGREYHLHHILVD 140
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPV 557
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 141 NEQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQK 199
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + ++ + Q M + L + L+ Q +
Sbjct: 200 GQMTDTPVKTQFGWHIIRVDDVRSITPPPFEQVKQQIAQQMVQQKLQAFEESLRQQAKIQ 259
Score = 38.3 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + Q + L++ + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADAMIAQLVQQGQQ-----------DTPQLEQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIKRGI 79
Score = 37.1 bits (83), Expect = 8.9, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 4/148 (2%)
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
+ S+ EL+A Y+ + E ++ N+++A + +K G KF LA++ K
Sbjct: 109 NQPSDTELKARYDDLVKNAGGREYHLH-HILVDNEQQAKDLIAKIKGGAKFEDLAKQYSK 167
Query: 306 SLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
G P A + L K + FG+ I V +++
Sbjct: 168 DPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDTPVKTQFGWHIIRVDDVRSITPP 227
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390
F++VK+ IA QM K + ++
Sbjct: 228 PFEQVKQQIAQQMVQQKLQAFEESLRQQ 255
>gi|65319635|ref|ZP_00392594.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Bacillus
anthracis str. A2012]
Length = 283
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 123 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 182 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 241 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 278
>gi|222095920|ref|YP_002529977.1| peptidylprolyl isomerase [Bacillus cereus Q1]
gi|221239978|gb|ACM12688.1| protein export protein prsa [Bacillus cereus Q1]
Length = 283
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 123 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 182 AGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 241 EQQRLQDTTGKWKQQVVNGLLKDADIKVNDKEFKNTFE 278
>gi|163846602|ref|YP_001634646.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
aurantiacus J-10-fl]
gi|222524398|ref|YP_002568869.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
Y-400-fl]
gi|163667891|gb|ABY34257.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
aurantiacus J-10-fl]
gi|222448277|gb|ACM52543.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
Y-400-fl]
Length = 490
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 43/416 (10%), Positives = 104/416 (25%), Gaps = 43/416 (10%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFIN----SWKQ 62
+ R + ++ + S V VG + S + ++ +
Sbjct: 5 RRQRLIIIVTASALVIALLAVASGLIYEQLWIPSRPVAQVGSVTLTRSDYWREQRIAYAR 64
Query: 63 EL--------------GMISQKIGFVVNSER----ARSVGLDKKILDNLVSGATLDQFIE 104
++ + Q G + ++ R +D++++ + +
Sbjct: 65 QIIQNFQLLDLFGNNPQIAQQFQGRSIVIDQQIRALRRAEVDQQVVSEWIDRQIKQRAAG 124
Query: 105 DIGLEADHGRVWGEIARSPLF----------HGKDNKFSHDVFVSRLAREGINEKEYIDH 154
+ G+ + V I F D+ + + V A
Sbjct: 125 EFGITINDDEVIQNIVADLGFIFIPPLPEPTPTPDSNVTPEPTVDPAATATPEPTATPSP 184
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
+ T A+ ++ +D + + + +
Sbjct: 185 TPGGPTPTPEPSPTPVPTFTPEPTPLPAEARVQFDQIIDEVFRRYELELIVTERQPELSK 244
Query: 215 QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK-YFSPEIRTVE 273
F + + V E + + + A +E
Sbjct: 245 DEFRQALLDQYRERLLNEQIQARLVPEDGFTYKTEAERVSARQILVAVTPPAEATPEQIE 304
Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPD-----VS 324
A E L+ G F LA E+ + +GSF + D
Sbjct: 305 AAFAAALPAAQEIVAQLRNGADFATLAAERSDDIGSRENGGDIGSFDRNGFADNGATYPP 364
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI-KPSFTVSFQEVKKDIANQMRITK 379
+ + I FG+ I +++ PS + + + ++ +
Sbjct: 365 ELVAAAFSLPVNQVSDPIRTQFGWHILEITDQTIPSQEEQLSQARTEAFDRWIAEQ 420
Score = 44.1 bits (101), Expect = 0.075, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 61/179 (34%), Gaps = 16/179 (8%)
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQL 506
+ L++ L + + + + L V + + ++ A + A Q
Sbjct: 257 ERLLNEQIQARLVPEDGFTYKTEAERVSARQILVAVTPPAEATPEQIEAAFAAALPAAQE 316
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQ------INRMDNENKF--FGYDGISQVFSGPVE 558
++ + G +F + + + +R + + + ++ FS PV
Sbjct: 317 IVAQLRNGADFATLAAERSDDIGSRENGGDIGSFDRNGFADNGATYPPELVAAAFSLPVN 376
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V PI + + ++T+ + +E L+Q + D IA ++ V
Sbjct: 377 QV-SDPIRTQFGWHILEITDQTIPSQEE------QLSQARTEA-FDRWIAEQRAAADVR 427
>gi|312127370|ref|YP_003992244.1| hypothetical protein Calhy_1155 [Caldicellulosiruptor
hydrothermalis 108]
gi|311777389|gb|ADQ06875.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
108]
Length = 233
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 12/136 (8%), Positives = 36/136 (26%), Gaps = 17/136 (12%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWG--------LSDALFSVSGSSTVVSVGRQKVPFSS 55
IRK + + + + ++ + + + V V +K+
Sbjct: 5 KIRKCF-SLIIMVIINLMAFSTVFSADIWIECGKKIKNIQQSKDNRVVAVVNGEKIYKKD 63
Query: 56 FINSWKQELGMISQKIGF--------VVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
++ E + + + K +L++++ L Q + G
Sbjct: 64 LEIAYALEEASYLSQKESYQKLLKKYKASFLKPPVQKTKKDVLNSMIENLLLLQAAKKEG 123
Query: 108 LEADHGRVWGEIARSP 123
++
Sbjct: 124 YFVSEKEAKDYYEKTK 139
>gi|196043445|ref|ZP_03110683.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB108]
gi|225864299|ref|YP_002749677.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB102]
gi|196025754|gb|EDX64423.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB108]
gi|225788486|gb|ACO28703.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus 03BB102]
Length = 283
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 123 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 182 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 241 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 278
>gi|89901176|ref|YP_523647.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
ferrireducens T118]
gi|89345913|gb|ABD70116.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodoferax
ferrireducens T118]
Length = 261
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 43/130 (33%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
K+++ E +A ++ + K GK K+ N + + +
Sbjct: 132 KEYRARHILVEKEDQAKAIIAQLKKGGKFDEIAKKSSKDPGSGANGGDLDWANPSNYVPE 191
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ P+++ Y + ++ + + + + D + Q + + +
Sbjct: 192 FSQALIKLTKGQTTETPVKSQFGYHIIRLDDVRDAQLPKFDDVKPQIAQQLQQQKMTKYQ 251
Query: 608 AYLKSQYSVT 617
L+++ +
Sbjct: 252 EELRAKAKIE 261
Score = 37.9 bits (85), Expect = 5.9, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 11/75 (14%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ V V + VP + L + G + E L +++ ++
Sbjct: 23 SAQNVAIVNGKAVPTARMD-----ALAQQVARSGRPITPEM--QGQLKEEV----IAREI 71
Query: 99 LDQFIEDIGLEADHG 113
Q + GL+
Sbjct: 72 FMQEAKKQGLDTTED 86
Score = 37.1 bits (83), Expect = 8.9, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 69/172 (40%), Gaps = 4/172 (2%)
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ ++ I +K +++ +++AEY+K S + ++ +
Sbjct: 87 FRTQMDLARQTLLIRELFANYQKTSPVTDADIKAEYDKFAAA-NSGKEYRARHILVEKED 145
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDF 338
+A LKKG KF ++A++ K + G P + ++ L K
Sbjct: 146 QAKAIIAQLKKGGKFDEIAKKSSKDPGSGANGGDLDWANPSNYVPEFSQALIKLTKGQTT 205
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+ FGY I + +++ + F +VK IA Q++ K ++ +E +
Sbjct: 206 ETPVKSQFGYHIIRLDDVRDAQLPKFDDVKPQIAQQLQQQKMTKYQEELRAK 257
>gi|88704591|ref|ZP_01102304.1| Chaperone surA [Congregibacter litoralis KT71]
gi|88700912|gb|EAQ98018.1| Chaperone surA [Congregibacter litoralis KT71]
Length = 400
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 41/387 (10%), Positives = 99/387 (25%), Gaps = 53/387 (13%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
S I+ + G E L ++ LD L+ Q + G+
Sbjct: 16 ASELRERMAAVNQNIAAQ-GAEAPPEDV----LIRETLDRLILENIQIQMGQRFGVRISD 70
Query: 113 GRVWGEIARSPLFHG-KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
++ + R +G +F+ + + I E + + + + +V +
Sbjct: 71 AQLNQAMGRIAAQNGLTQEQFAVLLEQEGRSYMEIRENIEREMIIQRVQQGNVNQLIEIS 130
Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
+ L + I +D + E + R E
Sbjct: 131 DQEIENYLSTEEGQKLVQPEYRIIHALLPISSDTSDAEIEKNRTFSEGLVERIRDGESFE 190
Query: 232 ISYILFDVHEKEK-------------------------------KIEISNDELQAEYEKN 260
S + ++
Sbjct: 191 AVMTSVPQEYAFTGGDLGWRKLADLPSLFQEVAPTLSRGETADVFQSPSGLHIVTMADQR 250
Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEA---------FQSLKKGKKFIQLAEEQGKSL---- 307
+ V ++ + + + ++ G+ F LA E + +
Sbjct: 251 GGGDMTINQTKVRHILIEPSEILTDDQARDLAAELRERVEAGEDFGDLAREYSEDIGSAA 310
Query: 308 SDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV 367
LG S + +++ + + G +P + FG+ I V +
Sbjct: 311 EGGDLGWTSPGQMVPE--FENMMASTEVGVVSPPVRSQFGWHILEVLERREKDITE-DMR 367
Query: 368 KKDIANQMRITKASEKVKEDYKRLEEF 394
K + + K E++ +++ +
Sbjct: 368 KAQVREFLHGRKYQEELDAWLRKIRDE 394
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 34/299 (11%), Positives = 92/299 (30%), Gaps = 7/299 (2%)
Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA--SEK 383
I ++ + + +S+ + +S +E +K + + RI A
Sbjct: 102 YMEIRENIEREMIIQRVQQGNVNQLIEISDQEIENYLSTEEGQKLVQPEYRIIHALLPIS 161
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
+E+ + E R + + V G LF+
Sbjct: 162 SDTSDAEIEKNRTFSEGLVERIRDGESFEAVMTSVPQEYAFTGGDLGWRKLADLPSLFQE 221
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSK 502
+ V V + + D + + + + + T ++
Sbjct: 222 VAPTLSRGETADVFQSPSGLHIVTMADQRGGGDMTINQTKVRHILIEPSEILTDDQARDL 281
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A +L E + G++F D+ + + + + + + + + V
Sbjct: 282 AAELR-ERVEAGEDFGDLAREYSEDIGSAAEGGDLGWTSPGQMVPEFENMMASTEVGVVS 340
Query: 563 FPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P+ + + + +V + + E K + +L ++ LD+ + ++ + V +
Sbjct: 341 PPVRSQFGWHILEVLERREKDITEDMRKAQVREFLHGRKYQEELDAWLRKIRDEAFVDI 399
>gi|294084202|ref|YP_003550960.1| SurA domain-containing protein [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663775|gb|ADE38876.1| SurA domain protein [Candidatus Puniceispirillum marinum IMCC1322]
Length = 424
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 17/173 (9%), Positives = 40/173 (23%), Gaps = 25/173 (14%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
R + + + + ++ + L + + V V + +
Sbjct: 7 FRIFTTSIM---LIGMMAL--------GGLNASANIKIVAKVDGKPITNYDVDQRVLFLK 55
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ + + K L LV Q + + A P
Sbjct: 56 AV------TNLPETENIEKQIRKDALQMLVDDTLKMQAA------LSTNPLVQQQANRPA 103
Query: 125 FHGKDNKF--SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
D F + + L R +N + L + + +
Sbjct: 104 TDLIDQSFASDSESGSAALRRLNLNYDAVKTKFAADLIWSGYLQDKFADIFAE 156
>gi|327438069|dbj|BAK14434.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris
StLB046]
Length = 324
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 19/184 (10%), Positives = 50/184 (27%), Gaps = 28/184 (15%)
Query: 25 FLIWGLSDALFSV---SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
F++W L + G + +V + ++ + G
Sbjct: 45 FVLWLLPSDETTSEKEDGGEKIAAVEGDPITRQQWLAEMENRYG---------------- 88
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD----NKFSHDVF 137
K+ L +LV+ A +++ E L+ + EIA + + S +
Sbjct: 89 -----KETLQSLVNEAVMEKAAEKYKLDVKEEEIDLEIALLRSAQDSNDSTLHSLSPEQL 143
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
++ + I +K + + + + + +
Sbjct: 144 RQKMRAQLILDKVLTNDIVVKENEAKKYYEDNKSIYNIPTTHRTSIIIVNSKEDAERVEK 203
Query: 198 NNRH 201
+
Sbjct: 204 ELKD 207
Score = 39.5 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 25/258 (9%), Positives = 76/258 (29%), Gaps = 4/258 (1%)
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+ T ++ + IA ++ + + L + ++E
Sbjct: 40 GNLFWFVLWLLPSDETTSEKEDGGEKIAAVEGDPITRQQWLAEMENRYGKETLQSLVNEA 99
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ L + + +A + L + + + L
Sbjct: 100 VMEKAAEKYKLDVKEEEIDLEIALLRSAQDSNDSTLHSLSPEQLRQKMRAQLILDKVLTN 159
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
+ +KE+ + + + + ++ +T A + V + K+G +F + +
Sbjct: 160 DIVVKENEAKKYYEDNKSIYNIPTTHRTSIIIVNSKEDA-ERVEKELKDGSDFAVLAREH 218
Query: 525 GASLLTTN---QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ + I + + + +V + + + Y + KVT +
Sbjct: 219 SLDTASASLGGDIGFISSSQSAVDPAILPEVEKLKEKETSKPFVLSDGRYAIVKVTENME 278
Query: 582 GPVQEKDKFISYLTQMMN 599
G D+ ++ + +
Sbjct: 279 GQSFSFDEVEGHVKRQLA 296
>gi|225154955|ref|ZP_03723452.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae
bacterium TAV2]
gi|224804314|gb|EEG22540.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Opitutaceae
bacterium TAV2]
Length = 332
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 51/138 (36%), Gaps = 6/138 (4%)
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVF 553
T +E ++ + + + +++G +F + + + + + F + + +
Sbjct: 186 TQDEARARLDDVKKKLAQKGADFAALARVESDEKRSAANGGELGWLTDGQFRPEILDTLK 245
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAY 609
+ V P+ + + K + D+ S L Q + + + +A
Sbjct: 246 NLAAGQVGE-PLRLDDGWHILKALEVREARPLTLDEVRSQLAQRLRAERAQANRQTHLAR 304
Query: 610 LKSQYSVTVHDNLIQRYL 627
L + VT+++ + + L
Sbjct: 305 LLEKNPVTINELALSQVL 322
>gi|293605263|ref|ZP_06687649.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
43553]
gi|292816319|gb|EFF75414.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
43553]
Length = 267
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 35/138 (25%), Gaps = 4/138 (2%)
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
+ + + + AN ++ + + F ++ + N
Sbjct: 112 DHILFQVTPDVNLDMLRAHANTVLQDLLADPSRFAEVARAQSNCPSAAVGGNLGQLGRGD 171
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV----GPVQEKDKFISYLTQMMN 599
+ VF+ P + ++ + +VT + + L+ M
Sbjct: 172 TVPEFERAVFALPSGGLLPQLLQTRHGLHIVRVTRRIEGRMLPYEHVAQQIAAALSSMSQ 231
Query: 600 KDLLDSVIAYLKSQYSVT 617
L Q V
Sbjct: 232 DTAWRQYTKLLVEQADVQ 249
>gi|34498387|ref|NP_902602.1| signal peptide protein [Chromobacterium violaceum ATCC 12472]
gi|34104241|gb|AAQ60600.1| probable signal peptide protein [Chromobacterium violaceum ATCC
12472]
Length = 262
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+ A +++ + K+G F ++ K M+ + + P
Sbjct: 145 EADAQKVIAQL-KKGAKFDELVKTRSIDPNAKQSGGDMNWGNLSRMEPKLAEALKAIPKG 203
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V P ++ L + VFKV + + V D + + + ++ + + L+++ +
Sbjct: 204 QVSSAPYQSQLGWHVFKVADIRNAQVPPLDAVKPQIARQLQEEAIAKAVEDLRAKSKIQ 262
Score = 41.8 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 14/97 (14%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
++ V + S + + + S L +++ ++L+ +
Sbjct: 22 ESIAVVNGVSIDKSELDAAVTNVVQSSG--------GKMQDSPELREQLKNSLIGRQLIL 73
Query: 101 QFIEDIGLEADH------GRVWGEIARSPLFHGKDNK 131
Q GL+ V E+ R LF K
Sbjct: 74 QESTRRGLDKQPAFAKRMDEVRAELLRDALFADIAEK 110
>gi|228985422|ref|ZP_04145581.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|228774375|gb|EEM22782.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 288
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 128 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 186
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 187 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 245
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q ++ V+ L + V+D + +
Sbjct: 246 EQQRLQETTGKWKQQVVNELLKDADIKVNDKEFKNTFE 283
>gi|167893828|ref|ZP_02481230.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
pseudomallei 7894]
gi|167918548|ref|ZP_02505639.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
pseudomallei BCC215]
Length = 259
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 10/180 (5%)
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-------- 498
+ P K V + + I++ + E+ K E
Sbjct: 81 NRPDVKAQIVVAQQTAVLRALIEDFLKKNQPSDTELKARYDDLVKNAGGREYHLHHILVD 140
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPV 557
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 141 NEQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQK 199
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + ++ + Q M + L + L+ Q +
Sbjct: 200 GQMTDTPVKTQFGWHIIRVDDVRSITPPPFEQVKQQIAQQMVQQKLQAFEESLRQQAKIQ 259
Score = 37.9 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + Q + L++ + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADAMIAQLVQQGQQ-----------DTPQLEQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIKRGI 79
Score = 37.1 bits (83), Expect = 9.5, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 4/148 (2%)
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
+ S+ EL+A Y+ + E ++ N+++A + +K G KF LA++ K
Sbjct: 109 NQPSDTELKARYDDLVKNAGGREYHLH-HILVDNEQQAKDLIAKIKGGAKFEDLAKQYSK 167
Query: 306 SLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
G P A + L K + FG+ I V +++
Sbjct: 168 DPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQKGQMTDTPVKTQFGWHIIRVDDVRSITPP 227
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390
F++VK+ IA QM K + ++
Sbjct: 228 PFEQVKQQIAQQMVQQKLQAFEESLRQQ 255
>gi|311748700|ref|ZP_07722485.1| peptidyl-prolyl cis-trans isomerase (survival protein)
[Algoriphagus sp. PR1]
gi|311302821|gb|EAZ81480.2| peptidyl-prolyl cis-trans isomerase (survival protein)
[Algoriphagus sp. PR1]
Length = 458
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 38/484 (7%), Positives = 103/484 (21%), Gaps = 76/484 (15%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ +P V V + S ++ + L +
Sbjct: 16 MILPLAAQEAPANGSGQVLDKIVAKVDNNILLESDIQRAYLEALAQ----------RQEG 65
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ ++ ++L+ + E + V + F+ +F
Sbjct: 66 VTPPTRCEVFESLMVNKLMVAKAEIDSVVVTDAEV--MLQTDQRFNMVLQQF-------- 115
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
GG + + + D I
Sbjct: 116 -----------------------------GGNEETLAEVYGKTADQIKTEIEDVIKEQLI 146
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
+ + E P+ + + K + +++ E +
Sbjct: 147 VQRMRGKITEGLTVSPAEVRAFYNAIPKDSLPLFTSEATVGQIVKKPEVSPKIKEEIFEK 206
Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
++ + +E+ G LG F +
Sbjct: 207 LRQFKQDILDGKSTFSELA-----------------TAYSEDPGSRTQGGDLGFFRSGEL 249
Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
++ K+G+ + + FG + + + + + ++ + KA
Sbjct: 250 --APEYEATALALKQGEISEPVESDFGIHLIQLLEKRNGSFNTRHILMIPKPSEDDLKKA 307
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
+ + ++ F ++ E +
Sbjct: 308 ERYLDSLKTEINNGTIEFAKA---AKELSDDRNTSDNGGFFVDPATNSNRLSLRTLEDPV 364
Query: 441 FRVFGKDDPLSKDHTVALPDG-----SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ + + K PA +E+ +K K
Sbjct: 365 LYFTIDSMNVGDITKPIQFENPREGTMLRILYYKAKYPAHRANMEDDYEKLKAATLRKKE 424
Query: 496 AEEV 499
E +
Sbjct: 425 DELL 428
>gi|256419700|ref|YP_003120353.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga
pinensis DSM 2588]
gi|256034608|gb|ACU58152.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chitinophaga
pinensis DSM 2588]
Length = 478
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 17/215 (7%), Positives = 54/215 (25%), Gaps = 9/215 (4%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
+ L+ ++ A + VG + + S N
Sbjct: 21 IFALSAGTLLLCQVAVAQQKMVADKIAAIVGDKIILRSDVEGEMVNLSRN---------N 71
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
++ + I++ ++S + E L V G+I + +
Sbjct: 72 ADGSLPPNAPCMIMEQIISQKVMVMQAERDSLPVSESDVDGQIENRIRYFQDVYGSPEKM 131
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
++ + + L + ++ + + + ++ Y
Sbjct: 132 KEVTGYSIYQLKERFRQPIKEGLLAKAMQDKITSSVKVTPSEVKKYFDAIPKDSLQYYES 191
Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
I + + Q+ ++ ++
Sbjct: 192 ELEIGQIVIQPKATKEMDQYAIDRLLEFKKQVQEK 226
>gi|52424684|ref|YP_087821.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
gi|52306736|gb|AAU37236.1| SurA protein [Mannheimia succiniciproducens MBEL55E]
Length = 353
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 18/181 (9%), Positives = 54/181 (29%), Gaps = 25/181 (13%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K L+V+ F + ++ + V +V + S + ++ +
Sbjct: 44 LKSLLLVMIGMFAV-----SVNVQAVEQVVATVDGTPILESQLKRALGKQANNATN---- 94
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
K LD ++ + + +++ + G++ + N +
Sbjct: 95 ------------RAKALDKIIDDMLVQKAVKEANVHISEGQLDKIVENIAA----QNNMT 138
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + L +GI ++ ++ L +V +G + ++
Sbjct: 139 YGQLLDALDYQGIGITKFRNNIRNQLMMAEVRNRSIGKNIDVTREQVETLSKQMLEQAKT 198
Query: 194 Y 194
Sbjct: 199 Q 199
Score = 45.2 bits (104), Expect = 0.031, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ ++ NQ+ + F K+ L+ + QV
Sbjct: 227 QAKAQLNQICSDIQSGKTTFAAAAKDYSKDYLSGANGGDLGYAFPEIYDPAFGQVIKATK 286
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ V P + + + +VT+++ G + E + K L +D + L+
Sbjct: 287 KGVISAPFKTQFGWHILEVTDTRQGDMTEAAYRQKAYETLVNQQLQDDAKDWVKALRKGA 346
Query: 615 SVT 617
+
Sbjct: 347 EIK 349
>gi|222085450|ref|YP_002543980.1| peptidyl-prolyl cis-trans isomerase protein [Agrobacterium
radiobacter K84]
gi|221722898|gb|ACM26054.1| peptidyl-prolyl cis-trans isomerase protein [Agrobacterium
radiobacter K84]
Length = 316
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 26/199 (13%), Positives = 50/199 (25%), Gaps = 17/199 (8%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+T + + + + + + + + S V V + +
Sbjct: 5 KTPMRAVLFGAAALIMATFAMPSSDVAFAASEVKVVVNNSVITSGDIAKRINFLK--LQH 62
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G L+K + LV I + + V R
Sbjct: 63 QKGD-----------LNKLAQEQLVDETLKRAEISRVRMSVSTSDVDSAFGRFAA----S 107
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
NK S L + G+ + + +S VV G + L D EN
Sbjct: 108 NKMSPQQLGQILDKMGVGVDHFKSYIAVSMSWPRVVNARFGSSGGNKLSNDDLVTRMTEN 167
Query: 190 RSVDYIVLNNRHVPAIADP 208
++ P
Sbjct: 168 KTKPVTTEYFLKQIVFVVP 186
>gi|196232957|ref|ZP_03131806.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
flavus Ellin428]
gi|196222935|gb|EDY17456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chthoniobacter
flavus Ellin428]
Length = 136
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNE-NKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
K+G++F + + + +D + + + F + P+ +
Sbjct: 2 KKGEDFGKLAQEISEDPSAKENKGDLDFFRKEAMVPEFSNAAFGMKKGEI-SDPVRSDFG 60
Query: 571 YVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
+ V KVT+ K + K + +++L + ++ VI ++ + V ++
Sbjct: 61 FHVIKVTDRKDAETVTLEKAKPQLLAFLKNQKKQAAVEEVIKGVREKAEVKIN 113
>gi|218777909|ref|YP_002429227.1| hypothetical protein Dalk_0049 [Desulfatibacillum alkenivorans
AK-01]
gi|218759293|gb|ACL01759.1| hypothetical protein Dalk_0049 [Desulfatibacillum alkenivorans
AK-01]
Length = 280
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 11/119 (9%)
Query: 9 SRTWVAKIFL-----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
+ VA + L V+L FL G + + VG + F ++
Sbjct: 7 KNSRVASVILTGALAVLLVGVFLFSGCGE--REQVRDDALARVGETVLKLPEFNELFELA 64
Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
S G A ++ L+ LV + ++ GL +
Sbjct: 65 EAGFSG-YGLGYT---ANRKETRRQFLNQLVEEMFVLEYARVNGLVLTPEALQKAEQEI 119
>gi|319789891|ref|YP_004151524.1| hypothetical protein Theam_0916 [Thermovibrio ammonificans HB-1]
gi|317114393|gb|ADU96883.1| hypothetical protein Theam_0916 [Thermovibrio ammonificans HB-1]
Length = 187
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 23/194 (11%), Positives = 51/194 (26%), Gaps = 17/194 (8%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K+ + +L + S + + + V +K+ +
Sbjct: 3 KLTVALLTLVVA-------TSSAASAKVLAEVNGKKITDKDLNAAIDSLPPQYHTLKNNP 55
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
K++L+NLV L Q GLE + + + S
Sbjct: 56 ---------TFRKRMLENLVKEELLYQEALKEGLE-NDPAFKRRLEQIKKRLLVQYLLSK 105
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
V ++ K + + KM + + + P + + ++
Sbjct: 106 HVKPPKVEVTKKEAKAFYEKNKKMFTDATGKQVPFSAVEPFIMENLKRQKEQEALNRAVE 165
Query: 195 IVLNNRHVPAIADP 208
+ N A
Sbjct: 166 NYVKNLEAHAKVKI 179
>gi|60683327|ref|YP_213471.1| putative exported isomerase [Bacteroides fragilis NCTC 9343]
gi|60494761|emb|CAH09567.1| putative exported isomerase [Bacteroides fragilis NCTC 9343]
Length = 517
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 39/440 (8%), Positives = 105/440 (23%), Gaps = 45/440 (10%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + Y S +K + +Y
Sbjct: 89 MENYHRALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREA 148
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
++ F L + + +G + + K G+
Sbjct: 149 QILMDSLYHVLETHPDIDFKTLVNKYSDDKKEFWMGWLQTSQEF-----EEVAFSLKDGE 203
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
++ G I V+ + F++++ ++ +++ ++K E + + +
Sbjct: 204 YSKPFFTPKGIQIIKVTGRRE--IPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSICQ 261
Query: 398 GTSMDEISRREKIVSIDLPL-VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
T GK GK+ + + +
Sbjct: 262 YTPDKAGMEELLASGRTSRTLFTLDGKSFTGKDFERFADAHPMGIKRQLNAFVVKSILDY 321
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVK-KDWKTVKTAEEVSSKANQLVLEYSKEGK 515
++++ P L++ D+ ++ + S + L + +
Sbjct: 322 ENN-------RLEQKYPDFRLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRT 374
Query: 516 NFRDIGKNLGASL---LTTNQINRMDNENKFFGYD----GISQVFSGPVEMVKC----FP 564
++ ++ + K + I F+ P
Sbjct: 375 DYNWDSPRYRGAVLHGTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGT 434
Query: 565 IENGLSYVVFK------------------VTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
G + V K V K + + I L + L
Sbjct: 435 FAEGDNVFVDKLVFKKGDFEPLKSYPFTVVLGEKKKGPESYHEIIPQLIRDYQNHLDALW 494
Query: 607 IAYLKSQYSVTVHDNLIQRY 626
L++ V ++ +++
Sbjct: 495 TERLRASAKVEINQEVLKTV 514
Score = 39.5 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 57/493 (11%), Positives = 119/493 (24%), Gaps = 56/493 (11%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI + L F ++ + Q + S F +
Sbjct: 3 KILVGTLTCLF-----GAIAGHAQQDPVLMRINGQDITRSEFERFCHRNK---------- 47
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGL-EADHGRVWGEIARSPLFHGKDNKFS 133
S A L + D V + GL F + +
Sbjct: 48 -PSGIAGKETLKRCA-DLFVDMKLKLSAAQKAGLDTVSD------------FRTEMENYH 93
Query: 134 HDVFVSRL---AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+ S L A + K+ D + +V M + P L +
Sbjct: 94 RALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREAQILMD 153
Query: 191 SVDYIVLNNRHVPAIADP---SNAVLTQWF---------EKYKDNYRAPEYKRISYILFD 238
S+ +++ + + S+ W E+ + + EY + +
Sbjct: 154 SLYHVLETHPDIDFKTLVNKYSDDKKEFWMGWLQTSQEFEEVAFSLKDGEYSKPFFTPKG 213
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ + + + K E ++ N+ ++ + K G +
Sbjct: 214 IQIIKVTGRREIPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSICQYTPDKAGME-EL 272
Query: 299 LAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
LA + G + AD+ K+ V+ Y + P
Sbjct: 273 LASGRTSRTLFTLDGKSFTGKDFER-FADAHPMGIKRQLNAFVVKSILDYENNRLEQKYP 331
Query: 359 SFTVSFQEVKKD---IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
F ++ Q+ + D A R ++ + + R V
Sbjct: 332 DFRLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRTDYNWDSPRYRGAVLHGT 391
Query: 416 PLVDFAGKDVKGKEVA---AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM---WVQIK 469
K++ + T A D ++ +
Sbjct: 392 HKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGTFAEGDNVFVDKLVFKKG 451
Query: 470 ESIPARDRKLEEV 482
+ P + V
Sbjct: 452 DFEPLKSYPFTVV 464
>gi|296329574|ref|ZP_06872060.1| hypothetical protein BSU6633_00635 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305672771|ref|YP_003864442.1| putative secretion protein [Bacillus subtilis subsp. spizizenii
str. W23]
gi|296153317|gb|EFG94180.1| hypothetical protein BSU6633_00635 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411014|gb|ADM36132.1| putative secretion protein [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 297
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 23/304 (7%), Positives = 74/304 (24%), Gaps = 40/304 (13%)
Query: 8 ASRTWVAKIFLVVLF--VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
SRT I +L + + ++ ++G + V ++ + G
Sbjct: 2 KSRTIWTIILGALLVCCISVAYTLTKSQAGASPSGESIATIGGKSVTREEWLKEMEDRYG 61
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL- 124
K L+++++ ++Q + L+ + + E
Sbjct: 62 ---------------------KSTLEDMINVRVVEQLAKKNNLKVSNNEIDREFLLVKAV 100
Query: 125 ---FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
F+ ++ + + E D + + +
Sbjct: 101 NNSFYEDEHTTEKEWKDQIRYNILLEELLTRDIDISNKELKSFYNKNKELYQFDDSYRIR 160
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF-------------EKYKDNYRAPE 228
E + + + A + ++ + E
Sbjct: 161 HIVVKDEEEAREVLKELKGGSSFEAVAAERSTDRYTSPYGGDLGFVTEASDNIPSAYIEE 220
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ + + + + +L+ + + Y + + Q+ +
Sbjct: 221 AQTLKEDEWSDEPIKVSNGYAVIQLKEKLKARTFSYDEVKDQIRRQIAMDQLGDKATVKT 280
Query: 289 SLKK 292
K+
Sbjct: 281 LWKE 284
>gi|222149929|ref|YP_002550886.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
gi|221736911|gb|ACM37874.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium vitis S4]
Length = 291
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 30/170 (17%), Positives = 66/170 (38%), Gaps = 4/170 (2%)
Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
+ + + + + + +K +++E++A YEK +
Sbjct: 80 IGEKMQDDPAYKQRMAFIADRELHNAFFKKHVVDVTTDEEVKARYEKEIAALPKEQEIHA 139
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD---ISLGSFSKEYIPDVSLADSI 329
++ + EA + + L GK F +LA+E+ S LG FSK + ++
Sbjct: 140 RHILVKTEDEAKDVIKQLDAGKDFAELAKEKSTDSSGSDGGDLGFFSKGRMV-PEFEEAA 198
Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
F+L + FG+ + V I+ + F++V++ + + K
Sbjct: 199 FALKPGTYTKTPVKSQFGFHVIKVEEIRDAAPPKFEDVQQQVRQLVMRDK 248
>gi|152993388|ref|YP_001359109.1| peptidyl-prolyl cis-trans isomerase [Sulfurovum sp. NBC37-1]
gi|151425249|dbj|BAF72752.1| peptidyl-prolyl cis-trans isomerase [Sulfurovum sp. NBC37-1]
Length = 282
Score = 48.3 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 29/255 (11%), Positives = 65/255 (25%), Gaps = 12/255 (4%)
Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
A V + I++R + + L G + + A+
Sbjct: 34 TKQDAEAFVSATAPNAHFSQLDPAQKNMITQRLIEKVLFMELAKKEGIENDPEFKKALEK 93
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ L L + + I + + K KT
Sbjct: 94 IKDELAVNLWMKKQLDSIVISDSEAKDFYEKNKDKFIQKEMVQARHI------LVKDEKT 147
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
A+E+ + L E K K F ++ K+ + V+
Sbjct: 148 AKEIIKELKPLKGEALK--KKFIELAKSKSIGPSAPKGGELGKFAKGQMVPEFSKAVWKL 205
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAYLK 611
+ + P++ Y + + + DK + + + ++ LK
Sbjct: 206 EKDQITLEPVKTQFGYHIILLEDKIEAQTVPYDKVKDQIIASLKQQEFAKKVAAIAKELK 265
Query: 612 SQYSVTVHDNLIQRY 626
S+ + +
Sbjct: 266 SKAKIVDNTAKANAV 280
>gi|297587540|ref|ZP_06946184.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516]
gi|297574229|gb|EFH92949.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516]
Length = 321
Score = 47.9 bits (111), Expect = 0.004, Method: Composition-based stats.
Identities = 22/173 (12%), Positives = 53/173 (30%), Gaps = 1/173 (0%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
L + + + S V +G++ + + Q I +
Sbjct: 4 FLAIVLAVMMVMVTGCSKKPDGAVAKIGKEYIYQKDVDKVMEDYKQYYGQDIFNPNTEQG 63
Query: 80 ARSV-GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
++ + KI+D L++ ++ ++D +E V E+ + G +KF +
Sbjct: 64 KEALKQIQPKIIDMLINEKIANKLMKDKKIEVSDKEVQAEVDKLQKQLGGADKFKEQLKK 123
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + E+ K LS+ + + N
Sbjct: 124 ENMTEQALKEQIEKQLKNKKLSQQFEKDFKPSDKEIKDEFDKNLDTYTQYNAD 176
>gi|32474370|ref|NP_867364.1| peptidyl-prolyl cis-trans isomerase [Rhodopirellula baltica SH 1]
gi|32444908|emb|CAD74910.1| probable peptidyl-prolyl cis-trans isomerase [Rhodopirellula
baltica SH 1]
Length = 395
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 37/295 (12%), Positives = 88/295 (29%), Gaps = 9/295 (3%)
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
D+ S V YV ++ T+ + +++ + T A++K +E
Sbjct: 80 DAQLSRMLAQASGEVPEDELHYVKLRMTRSLLVQTIQSRMLREAFLLEQVGTAAADKRRE 139
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLP-LVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ E+ K ++D +D + +
Sbjct: 140 AEATMAAKARQMFYETELPGLMKKANVDSKAELDDLLRKEGSSLAFRQREFMDQMLGSLY 199
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++KD V+L + + +E + K + + T + +
Sbjct: 200 IRSKVNKDPAVSLSE---IVRYYQEHQSKYEHKARARWEQLTVMFSNHPTRDAAMKAITE 256
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+ E G ++ ++ N+ Q+FS P + I
Sbjct: 257 MGREALYGGNMQAVAKAKSEEPFASSGGLHDWTNQGSLVSAILDQQIFSLPTGKMSEI-I 315
Query: 566 ENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
E+ +Y + +V + + +D L Q + + V+ ++ + V
Sbjct: 316 EDTDAYHIIRVLEREDAGVTPVGELQDDISDILRQQKIRADQEEVMVEVRQRVPV 370
>gi|306820765|ref|ZP_07454390.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551155|gb|EFM39121.1| peptidyl-prolyl cis-trans isomerase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 245
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 24/184 (13%), Positives = 57/184 (30%), Gaps = 10/184 (5%)
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + + Y+ + +S+ D ++ E K + +T
Sbjct: 63 LNNDEFKFEFESMKDNFISQYVIKTVLDSVTVSDEEVREFFETNKNAFGESETVSASHIL 122
Query: 503 ANQL-----VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
L + E + G++F + K + N + + FS V
Sbjct: 123 VGDLSKAESLYEKIQNGEDFATLAKENSTCPSSANGGDLGYFGRGQMVKEFEDMAFSLEV 182
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKSQ 613
V P++ Y + + + K + + L + + ++ + I L+ +
Sbjct: 183 GAV-SKPVKTQFGYHLILLNDKKADKPKSFEDIKDELRESLFAKKQQEAYVAKINSLREK 241
Query: 614 YSVT 617
Y V
Sbjct: 242 YGVK 245
>gi|53715358|ref|YP_101350.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
gi|52218223|dbj|BAD50816.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
Length = 517
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 40/440 (9%), Positives = 106/440 (24%), Gaps = 45/440 (10%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + Y S +K + +Y
Sbjct: 89 MENYHRALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREA 148
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
N ++ F L + + +G + + K G+
Sbjct: 149 QNLMDSLYHVLEAHPDIDFKTLVNKYSDDKKEFWMGWLQTSQEF-----EEVAFSLKDGE 203
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
++ G I V+ + F++++ ++ +++ ++K E + + +
Sbjct: 204 YSKPFFTPKGIQIVKVTGRRE--IPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSICQ 261
Query: 398 GTSMDEISRREKIVSIDLPL-VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
T GK GK+ + + +
Sbjct: 262 YTPDKAGMEELLASGRTSRTLFTLDGKSFTGKDFERFADAHPMGIKRQLNAFVVKSILDY 321
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVK-KDWKTVKTAEEVSSKANQLVLEYSKEGK 515
++++ P L++ D+ ++ + S + L + +
Sbjct: 322 ENN-------RLEQKYPDFRLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRT 374
Query: 516 NFRDIGKNLGASL---LTTNQINRMDNENKFFGYD----GISQVFSGPVEMVKC----FP 564
++ ++ + K + I F+ P
Sbjct: 375 DYNWDSPRYRGAVLHGTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGT 434
Query: 565 IENGLSYVVFK------------------VTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
G + V K V K + + I L + L
Sbjct: 435 FAEGDNVFVDKLVFKKGDFEPLKSYPFTVVLGEKKKGPESYHEIIPQLIRDYQNHLDALW 494
Query: 607 IAYLKSQYSVTVHDNLIQRY 626
L++ V ++ +++
Sbjct: 495 TERLRASAKVEINQEVLKTV 514
>gi|291278663|ref|YP_003495498.1| peptidyl-prolyl cis-trans isomerase SurA [Deferribacter
desulfuricans SSM1]
gi|290753365|dbj|BAI79742.1| peptidyl-prolyl cis-trans isomerase SurA [Deferribacter
desulfuricans SSM1]
Length = 304
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 23/249 (9%), Positives = 59/249 (23%), Gaps = 6/249 (2%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V VG + + + +++ I + + K++LD LV+ L
Sbjct: 24 DKVVAIVGDKIITQYDVESFNPKQVKKIYSIKDEATREKLLKKYY--KEVLDFLVNQYVL 81
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ E G++ V + N + + L + +Y +
Sbjct: 82 EIAAEREGIKVSESEVENALNEV----LTKNNITIEQLEKVLEENNLTLAKYKYQLKNEI 137
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + + R + + ++ +K
Sbjct: 138 LNARIRNALILPKLVVTEEDIKHYIDEHNKELKLDDQFELRIIKIKDKNRLDEIEKFLKK 197
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
A + E E K ++ +I ++
Sbjct: 198 GGSFADAAIKYSVDKTAKSGGYIGWIKLNHLPEKIREKVKGYKEGDIVKIEDNGEITLLF 257
Query: 280 QKEADEAFQ 288
+ +
Sbjct: 258 IENFKSKYD 266
>gi|251772782|gb|EES53344.1| putative peptidyl-prolyl cis-trans isomerase [Leptospirillum
ferrodiazotrophum]
Length = 307
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 5/104 (4%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L FL S V ++ Q V + +E G
Sbjct: 7 LAFIFLFLAASCHAKEAPLEGAVATLAGQPVSVADL-----RETARFMGVGGVADRPFTT 61
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ K + + + L + + G+ + E R
Sbjct: 62 WTPAFAKTVFEETIYDRLLAEAAQRQGISVSPKEIQEEKKRILA 105
>gi|126736394|ref|ZP_01752136.1| PPIC-type PPIASE domain [Roseobacter sp. CCS2]
gi|126714215|gb|EBA11084.1| PPIC-type PPIASE domain [Roseobacter sp. CCS2]
Length = 383
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 32/133 (24%), Gaps = 17/133 (12%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V++V + + + + + A + L+ Q
Sbjct: 8 PVITVNDRVITQYELSQRI-----RLLEVFRTPGDLNEAAR--------NALIEDRLKQQ 54
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G+ + + S F LA++GI+ D +
Sbjct: 55 ELARFGVSVPEDALQQAMEE----FAGRANMSLPQFTRVLAQDGIDISTLRDFVEVGILW 110
Query: 162 TDVVGMFVGGMRP 174
D +
Sbjct: 111 RDFIRSRFNRQIT 123
>gi|20806943|ref|NP_622114.1| hypothetical protein TTE0434 [Thermoanaerobacter tengcongensis MB4]
gi|20515421|gb|AAM23718.1| hypothetical protein TTE0434 [Thermoanaerobacter tengcongensis MB4]
Length = 241
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 16/176 (9%), Positives = 41/176 (23%), Gaps = 12/176 (6%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + V + + F L Q ++ +L+ LV
Sbjct: 62 NEGDIIAEVNGIPIYKNEFELRKGLTLASDEQI------------NDINNFVLNKLVREK 109
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ L+ + I + + + + A E+ + D+
Sbjct: 110 VKEYLAMKYNLKVSEDEINSYIEKEKQQFKEFPEAEKKLKELISASGMTYEEYWNDYERY 169
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
+ R + + + + K+ V A +
Sbjct: 170 NVKRMLLFDKLYNAIVDEGIKNGELKKTDKMTIEVQNEYKKYFDNIIDQYVKQAKI 225
>gi|299139204|ref|ZP_07032380.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
gi|298598884|gb|EFI55046.1| conserved hypothetical protein [Acidobacterium sp. MP5ACTX8]
Length = 262
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 17/194 (8%), Positives = 49/194 (25%), Gaps = 22/194 (11%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S + ++ + + + ++ L++ + +
Sbjct: 62 DRVVAIVNGDLILDSDVNEETRLQVFQPYRNPNADTS---------RDRAIERLINRSLI 112
Query: 100 DQFIEDIGLE----ADHGRVWGEI----ARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
Q + L+ +V ++ P + + + D + LA G E
Sbjct: 113 LQQ---LKLQPEDPITDDQVRKDLDNLRKNIPACKPYNCE-TPDGWNKFLATNGFTEATL 168
Query: 152 IDHYTKMLSRTDVVGMFVG-GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
I + + + G++ + +
Sbjct: 169 ISRWRSRMEVLRFIEERFRLGIKVKPEEIKSYYDKTLLPEYARQKATPPSLDSISSRIQE 228
Query: 211 AVLTQWFEKYKDNY 224
+L Q ++
Sbjct: 229 VLLQQEVSALLGDW 242
>gi|78188012|ref|YP_378350.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium
chlorochromatii CaD3]
gi|78170211|gb|ABB27307.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium
chlorochromatii CaD3]
Length = 438
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 51/464 (10%), Positives = 126/464 (27%), Gaps = 71/464 (15%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
G + F + + M+ + + A+ + + IL +V L
Sbjct: 37 GNDAI----FQSDINRRAAMLRAQY-----PDLAKEQSVPRNILQGMVEQKLLVTKARLD 87
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+ + +V RL + ++ +
Sbjct: 88 SVTVESAQVDATTLE------------------RLRQIVARFPTKQAMERQLGMTLPALR 129
Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
+ + L D+ +R SV Y + + + A
Sbjct: 130 ESIREELTNQQLADKLRRKKTALASVTYDEVMAFYRDNRGQIAPAD-------------- 175
Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
+ KY + + ++ Q E
Sbjct: 176 ---------------------------EQVSVSQIIKYAAVTPESRKEAAAVMQSIQQEL 208
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
G+ + +++ G + S LG K + + + + K+G+ + V+ +
Sbjct: 209 QAGADFGELARKYSQDPGSATSGGDLGFVRKGQLV--ARFEQVAFALKEGEVSEVVETRY 266
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
G + + N + +++ + +A+ + Y+ + +
Sbjct: 267 GLHLIQMLNRDDNSIHVRHILRRMERSTDDFKEANSTLASAYESVVSGKESFADAAKRLS 326
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAI-PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ + + + AG + + + P LL + D + + Y
Sbjct: 327 DDDVSAARGGQLVAAGASRQTVPLNKLFPQMRSLLGALKVGDVSRPQLIEPPQGEPFYAI 386
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
++ E IPA ++ + V++ K + S L E
Sbjct: 387 FKLNERIPAHPVDPQKDYSVVEELALDAKKEQLFSEWMESLYKE 430
>gi|85717064|ref|ZP_01048025.1| hypothetical protein NB311A_10143 [Nitrobacter sp. Nb-311A]
gi|85696102|gb|EAQ33999.1| hypothetical protein NB311A_10143 [Nitrobacter sp. Nb-311A]
Length = 298
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 13/115 (11%)
Query: 10 RTWVAKIFLVVLFVPFLIWGL---SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
+ + + V+ L+ G S S V VG Q + F N +
Sbjct: 8 QNAITRTAAVLGLCGLLVAGCSKNGGEQTSAPNSQIVAHVGDQVITTQEFANELRLL--- 64
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ ++ + KK+L +V+ L Q L+ + + +
Sbjct: 65 -------NIPPDKQKDHETVKKVLSEMVTRKYLLQQALTAKLDREPNVLLEILRS 112
>gi|225848231|ref|YP_002728394.1| SurA N- domain family [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644703|gb|ACN99753.1| SurA N- domain family [Sulfurihydrogenibium azorense Az-Fu1]
Length = 285
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 19/166 (11%), Positives = 46/166 (27%), Gaps = 23/166 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ V+ + F+ + V+ V + V S +
Sbjct: 2 KKVSFIFIFVLTVLGFV--KAENLEGYQLFDKIVLVVNGEPVLKSDVEFA---------- 49
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + DK+ + ++ L Q +G+ V + +
Sbjct: 50 --------KEWYKIKDDKQAQEKIIDSILLSQQARKLGISVSPKEVDNALLSIA---KAN 98
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
N + F L + GI+ + + T+ L + ++
Sbjct: 99 NIQDLETFKKELEKNGISYTKLKEFITRDLVSNKFLHFYLRDYITK 144
>gi|289422639|ref|ZP_06424480.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
gi|289156939|gb|EFD05563.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
Length = 349
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 32/285 (11%), Positives = 80/285 (28%), Gaps = 16/285 (5%)
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS- 412
N + + + + K++ ++ + + + + +
Sbjct: 39 ENQLKFQKWMMESQYGEEVWTQMEAQDKNYQETMKKQVATSVSRIRAFTDYAEKNGVKPD 98
Query: 413 -IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
L K + E +++ L F D K V+L + + E
Sbjct: 99 QKQLKEFQAQNKKMLEDEKMKKSFEKTGLDEKFLDDFAKEKATMVSLSEYLKKKSKPTEK 158
Query: 472 IPARDRKLEEVLTDVKKDWKTVK---------TAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ V T + K + E +K G +F+++ K
Sbjct: 159 ELKDYYEKNSVKAKAAHILLTTTDTNGKPLSPEKKAEVKKKADKIYEEAKSGVDFKELAK 218
Query: 523 NLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ + K + VFS + PIE Y + K+
Sbjct: 219 KNSQDPGSAQNGGELGEFGKGQMVPEFEKAVFSMKEGEI-SKPIETQYGYHIIKLEKIT- 276
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
E DK + + ++++ + + + ++ +++
Sbjct: 277 --KSEFDKVKAEMEAALSQEKAQKLAQSIIDAAKIQTNEENLKKV 319
Score = 44.1 bits (101), Expect = 0.073, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 38/109 (34%), Gaps = 5/109 (4%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV-----N 76
L+ + + ++ V +V + + N K + M+ + G V
Sbjct: 4 LASILLAAVIAVSTAACSNNEVATVNGKSISSKEIENQLKFQKWMMESQYGEEVWTQMEA 63
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
++ + K++ ++ + E G++ D ++ A++
Sbjct: 64 QDKNYQETMKKQVATSVSRIRAFTDYAEKNGVKPDQKQLKEFQAQNKKM 112
>gi|282866310|ref|ZP_06275356.1| hypothetical protein SACTEDRAFT_5901 [Streptomyces sp. ACTE]
gi|282558896|gb|EFB64452.1| hypothetical protein SACTEDRAFT_5901 [Streptomyces sp. ACTE]
Length = 218
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 23/191 (12%), Positives = 54/191 (28%), Gaps = 6/191 (3%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
L V + L A + VG +++ S+ +Q+
Sbjct: 9 LAVSAATLVAAPLLSACGGEAHPGAAAVVGGERIEVSAVQARTADVRS--AQEASEQSEQ 66
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+S L + L +L+ G LD+ +D G+ V ++ + +
Sbjct: 67 LVKKSGQLTRAKLHSLIFGRVLDRAAKDAGVSVSRKEV-QQVRTAAAAQSGG---DEGLR 122
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
L + + E + K + + ++ + ++++ V
Sbjct: 123 TVMLEQRWVAPGEIEEDLRKEVQLPKLAQALGADLQSPAGQQVVGEALTKASKALHIDVN 182
Query: 198 NNRHVPAIADP 208
A
Sbjct: 183 PRYGSWDDAKV 193
>gi|166030348|ref|ZP_02233177.1| hypothetical protein DORFOR_00009 [Dorea formicigenerans ATCC
27755]
gi|166029868|gb|EDR48625.1| hypothetical protein DORFOR_00009 [Dorea formicigenerans ATCC
27755]
Length = 260
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 26/260 (10%), Positives = 63/260 (24%), Gaps = 6/260 (2%)
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ +K + + A E + + ++ + +
Sbjct: 1 MNKTLDMIKGEYKIMDQKVLAVVGGHEITDKEVDAFIKSLPREQQAYASN-PQFRAQCQE 59
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+ ++ ++ + V++ + +
Sbjct: 60 QLEALYSFAKYGEDLKLDETEEYKSVMENARKDILARLAMKQLFDSVKVTDEEVKDYYEA 119
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
+ + K NQ++ K F D K + +
Sbjct: 120 NKSQFKKGATVHAKHILTDSEEKCNQILESIVSGEKVFEDAAKEFSTCPSGQRGGDLGEF 179
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFISYLT 595
+ F+ + V P++ Y + KV K + K++ S L
Sbjct: 180 GKGQMVKEFEDAAFAAEIGHV-VGPVKTQFGYHLIKVEEKKDAAESSFDEVKEQIKSQLK 238
Query: 596 QMMNKDLLDSVIAYLKSQYS 615
Q D +A L +Y
Sbjct: 239 QQKQGDAYSKKVAELTEKYK 258
>gi|220919567|ref|YP_002494871.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219957421|gb|ACL67805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 354
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 11/149 (7%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+ L ++ + + S V + + ++ I +
Sbjct: 5 IVLLGLVALA-ATACQPGSKDSKKSGPAVATGNGFTITAGELKARLDEQSPFIRARY--- 60
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
++ K+ LDNL+ L + E GL A+ V + + + F
Sbjct: 61 ------STLERKKEFLDNLIRFEVLAREAERQGL-ANDPDVQLTLKKVMVQKLVQKNFQD 113
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ A + ++Y D + R
Sbjct: 114 ANGAAAEALPEADLQKYYDEHKAEYYRPR 142
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 10/97 (10%), Positives = 27/97 (27%), Gaps = 3/97 (3%)
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF---KVTNSKVGPVQEKDK 589
++ K + + F+ Y+V + Q K +
Sbjct: 206 GFKSREDLEKAYSKEFADVTFNLQPGATSGVLETANAVYLVKGTGEQDELNRTFEQVKAQ 265
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ L + D + L+ V++ + ++
Sbjct: 266 IQTKLYREKKTKEFDGWLKKLRDDAKVSIDEKALEAV 302
>gi|157690854|ref|YP_001485316.1| peptidylprolyl isomerase [Bacillus pumilus SAFR-032]
gi|157679612|gb|ABV60756.1| possible peptidylprolyl isomerase [Bacillus pumilus SAFR-032]
Length = 302
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 46/149 (30%), Gaps = 27/149 (18%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
+R +R I ++++ +I +S A + + S+G++KV ++
Sbjct: 1 MRLKARVVWTFILVLLMINAVVIAYVLTKSQMSQASSNGKSGEEIASIGKEKVTRQEWLK 60
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ G K L+ +++ ++Q ++ LE + E
Sbjct: 61 KMEDRYG---------------------KATLEQMINQKVVNQLAKENKLEVSSKEINRE 99
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGIN 147
+ + H +
Sbjct: 100 LLMLKAVSNNFYEDGHTSEKDWTEQIRYQ 128
>gi|152990310|ref|YP_001356032.1| peptidyl-prolyl cis-trans isomerase [Nitratiruptor sp. SB155-2]
gi|151422171|dbj|BAF69675.1| peptidyl-prolyl cis-trans isomerase [Nitratiruptor sp. SB155-2]
Length = 272
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 44/163 (26%), Gaps = 9/163 (5%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN-----FRDI 520
+++ + + + + +A ++ E K KN F ++
Sbjct: 109 IKVTDKEAKAFYQKNIDKFKRPELVHARHILVKSEKEAQDIINELKKTPKNQLKQKFIEL 168
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
K + + FS P++ Y + V K
Sbjct: 169 AKTKSVGPSGKRGGDLGFFKKGQMVKPFSDAAFSLKPGTFTTKPVQTQFGYHIIYVEEKK 228
Query: 581 V----GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
Q KD+ + L ++++ LK + +
Sbjct: 229 PAGTIPFDQIKDRIKAQLKMKKFQEIVQKEAEKLKKSAKIQKN 271
Score = 42.2 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 23/271 (8%), Positives = 53/271 (19%), Gaps = 14/271 (5%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
V + +S + + V + Q Q
Sbjct: 4 IVATGLMAVSLIATQAMAAKVLAKVNGHAITTEDIAPMLSQIGARFEQLP---------- 53
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
+ ++++D + L + G+E +A+ + +
Sbjct: 54 -PQMKQQVIDKAIERELLKEKALKSGVEKS-KEFKEALAKIK--RDLALQIWMKKKYDSI 109
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
K + R ++V ++ D ++
Sbjct: 110 KVTDKEAKAFYQKNIDKFKRPELVHARHILVKSEKEAQDIINELKKTPKNQLKQKFIELA 169
Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
PS K P + + + EK
Sbjct: 170 KTKSVGPSGKRGGDLGFFKKGQMVKPFSDAAFSLKPGTFTTKPVQTQFGYHIIYVEEKKP 229
Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
+ K+ E Q +
Sbjct: 230 AGTIPFDQIKDRIKAQLKMKKFQEIVQKEAE 260
>gi|118445143|ref|YP_879240.1| peptidil-prolyl cis-trans isomerase [Clostridium novyi NT]
gi|118135599|gb|ABK62643.1| peptidil-prolyl cis-trans isomerase [Clostridium novyi NT]
Length = 247
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 6/157 (3%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++ + + V + + A ++ E K G F D
Sbjct: 92 VELTDKEVEDYYNANKSNFVVGEMISAKHILVDTEELAKEVAEEI-KNGMTFGDAATKYS 150
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
N + F+ + V P++ Y + +V + +
Sbjct: 151 TCPSKAQGGNLGKFGKGQMVPEFEEAAFNLEIGKV-SEPVKTQFGYHLIQVEEKQEATEK 209
Query: 586 EKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
D+ + L Q K + + LK +Y+V V
Sbjct: 210 SFDEVKDLIRTNLLQERQKVKYATTVEELKKKYNVEV 246
>gi|74317816|ref|YP_315556.1| hypothetical protein Tbd_1798 [Thiobacillus denitrificans ATCC
25259]
gi|74057311|gb|AAZ97751.1| hypothetical protein Tbd_1798 [Thiobacillus denitrificans ATCC
25259]
Length = 316
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 43/132 (32%), Gaps = 2/132 (1%)
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
+K ++ + + + + + + + + K D L A L + + +
Sbjct: 143 RKIYRLQEVSIQAPKEKHDAIRKQLEASKTLNDFLAWLKAENLPAK-VGQAVKPAEQLPA 201
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD-KFISYLTQMMNKDLLDS 605
+ ++ P NGL +V + ++ +++ L + +
Sbjct: 202 AVLPKLAQMPNGQALVANAPNGLLVLVVADSQAQPVTLEQAKPAIARALQAETRQKAAKA 261
Query: 606 VIAYLKSQYSVT 617
+ LK+ +
Sbjct: 262 ELDALKANAKIE 273
Score = 41.8 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 23/178 (12%), Positives = 51/178 (28%), Gaps = 16/178 (8%)
Query: 21 LFVPFLIWGLSD----ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L + L+ G D A S V ++ + ++ ++
Sbjct: 11 LVLAALVTGCGDKKEEAAADKPASQVAAKVNGTELTVHQVNYALQRI---------PNLD 61
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
++A+ L +++ NLV + Q + L+ RV + + + + +
Sbjct: 62 KDQAKPASL--QVVRNLVDQELVVQRALEEKLDR-DPRVVQAVDSARRQILAEAYMARKL 118
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+G + + H R V P K+ D+
Sbjct: 119 GTPSEPSDGEISEYFNSHPEMFAQRKIYRLQEVSIQAPKEKHDAIRKQLEASKTLNDF 176
>gi|310829352|ref|YP_003961709.1| hypothetical protein ELI_3795 [Eubacterium limosum KIST612]
gi|308741086|gb|ADO38746.1| hypothetical protein ELI_3795 [Eubacterium limosum KIST612]
Length = 497
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 21/299 (7%), Positives = 81/299 (27%), Gaps = 1/299 (0%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + +++ + + E G + ++ +K I +++ L
Sbjct: 178 DQVVGKINDEEIKRGIYNYYYINEEMTSYYSGGQGLQTDDESVKETNKSIFNSIAQNKAL 237
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
++ E+ +E + + + + L + +++Y ++ +
Sbjct: 238 IKYCEEYNIEIKQEEIDNALQTKQSIQKMMFQTDDE-LNQYLENYFLTKEKYDEYQKEDA 296
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + D R Y+++ Y + + + +
Sbjct: 297 RGIAAGQAIQAKVTEDVKVSDTDLRKYYKDHKDSYDESTVSAEHILTEDEALANEIYDKA 356
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ K ++ + KE + ++ + E + + + + +
Sbjct: 357 KDVKTKEDFEKIMNEYKSNEKVKEATDLGAFNKEKMVSEFSDAAFGMEKNSVSKPVKTEY 416
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+ G+ + +++ G+ + + L +
Sbjct: 417 GYHIIYVYDKNDAGEASFEDKKDEITKAVKEEKGTEDYNKLKEDLLKKEKIDIYDIKTT 475
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 42/499 (8%), Positives = 117/499 (23%), Gaps = 47/499 (9%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + Q + SF N + + + K +LD+LV
Sbjct: 36 DKQQVIAEIDGQSMTKESFNNYMAYYDLYYTANGSTMPTGSKLTEF--KKDLLDSLVQVG 93
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ + + D ++ + + + S L++ N +
Sbjct: 94 AMTAQAKKDNITIDEAAAES---QAQTALDSLKTSAGNKYDSTLSKYNTNNDSFTQFMKT 150
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFY--FENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ + + + + + + ++
Sbjct: 151 FMVDNSYASECYSKHMDYLKENPEEELDQVVGKINDEEIKRGIYNYYYINEEMTSYYSGG 210
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
+ D K I + K E N E++ E N + + + Q
Sbjct: 211 QGLQTDDESVKETNKSIFNSIAQNKALIKYCEEYNIEIKQEEIDNALQTKQSIQKMMFQT 270
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
+ + F + D + +A
Sbjct: 271 DDELNQYLE----------------------------NYFLTKEKYDEYQKEDARGIAAG 302
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
+ + S+ E + + +A D + +
Sbjct: 303 QAIQAKVTEDVKVSDTDLRKYYKDHKDSYDESTVSAEHILTEDEALANEIYDKAKDVKTK 362
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
+ + + + K+ E + + + +
Sbjct: 363 EDFEKIMNE-YKSNEKVKEATDLGAFNKEKMVSEFSDAAFGME-----------KNSVSK 410
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
+ Y + + + A + E+ ++ K K K E+ + L+ + +
Sbjct: 411 PVKTEYGYHIIYVYDKNDAGEASFEDKKDEITKAVKEEKGTEDYNKLKEDLLKKEKIDIY 470
Query: 516 NFRDIGKNLGASLLTTNQI 534
+ + ++ L + I
Sbjct: 471 DIKTTLESYMDQLKSELNI 489
Score = 39.1 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 49/450 (10%), Positives = 123/450 (27%), Gaps = 43/450 (9%)
Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
K N Y K+ +L + + +
Sbjct: 49 MTKESFNNYMAYYDLYYTANGSTMPTGSKLTEFKKDLLDSLVQVGAMTAQAKKDNITIDE 108
Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
+ +A A SLK + + ++ S F K ++ D S A +S
Sbjct: 109 AAAESQAQTALDSLKTSAGNKYDSTLSKYNTNNDSFTQFMKTFMVDNSYASECYSKHMDY 168
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
V ++ + +++ + + + E K + +
Sbjct: 169 LKENPEEELDQVVGKINDEEIKRGIYNYYYINEEMTSYYSGGQGLQTDDESVKETNKSIF 228
Query: 397 LGTSMDEISRRE---------KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
+ ++ + + + + + + + + + F K
Sbjct: 229 NSIAQNKALIKYCEEYNIEIKQEEIDNALQTKQSIQKMMFQTDDELNQYLENYFLTKEKY 288
Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW-----KTVKTAEEVSSK 502
D K+ + G + ++ E + D L + D K + E +
Sbjct: 289 DEYQKEDARGIAAGQAIQAKVTEDVKVSDTDLRKYYKDHKDSYDESTVSAEHILTEDEAL 348
Query: 503 ANQLVLEYS--KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
AN++ + K ++F I ++ + + + F V
Sbjct: 349 ANEIYDKAKDVKTKEDFEKIMNEYKSNEKVKEATDLGAFNKEKMVSEFSDAAFGMEKNSV 408
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD------------------- 601
P++ Y + V + + +T+ + ++
Sbjct: 409 -SKPVKTEYGYHIIYVYDKNDAGEASFEDKKDEITKAVKEEKGTEDYNKLKEDLLKKEKI 467
Query: 602 -------LLDSVIAYLKSQYSVTVHDNLIQ 624
L+S + LKS+ ++ V++ +Q
Sbjct: 468 DIYDIKTTLESYMDQLKSELNIQVYEKKVQ 497
>gi|94984847|ref|YP_604211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
geothermalis DSM 11300]
gi|94555128|gb|ABF45042.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus
geothermalis DSM 11300]
Length = 345
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 14/155 (9%), Positives = 36/155 (23%), Gaps = 2/155 (1%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-GLDKKILDNLVSG 96
+ + V VG + + F +++Q + + G + L
Sbjct: 54 NPQTVVAQVGNETYTLADFDRAFRQAVARVLNAQGVPYTPDLLAEFAEARPDFLTQFARD 113
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
+ Q + + ++A + D F + S E +
Sbjct: 114 RAVYQLARRTT-QVKPADIDAQVAEARKGFSSDADFQQALQASGYENEAEFRADLERQAV 172
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ G + + +
Sbjct: 173 VQAYLDSIKSRLTFGDALVQSFYNLNRAAFNRPAQ 207
>gi|255011715|ref|ZP_05283841.1| putative exported isomerase [Bacteroides fragilis 3_1_12]
gi|313149550|ref|ZP_07811743.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
gi|313138317|gb|EFR55677.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
Length = 517
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 44/510 (8%), Positives = 126/510 (24%), Gaps = 51/510 (10%)
Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
+ + + G + + ++ V +
Sbjct: 19 YARQDPVLMRINGQDISRSEFESFYHRNKPSGVSGKEALKVCVDLFVDKKLKLHAAQRAG 78
Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
++ L D +E D++++ + + +
Sbjct: 79 LDTLSAFRAEMDNYHRSLSKSYLTDSSAEEACARKLYDQMKSRSISGEVRVMHIFRYLPQ 138
Query: 274 QLVFPNQKEADEAFQ------SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
+ + +EA F L ++ ++ + +
Sbjct: 139 TALPHHLREAQALMDSLYNVLKTNPDTDFRTLVDQYSDDKAESWISWLQT-----PQEFE 193
Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK-ASEKVKE 386
+ K G+++ G I V+ + F++++ + ++ A + +
Sbjct: 194 EVAFSLKDGEYSQPFFTPKGLHIVKVTGRRE--LPPFEQIRDRLIRKLSYRPGADKGTEI 251
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGK 446
+L+E + L GK+ GK+ + +
Sbjct: 252 LVNKLKESYRYTPDKAAMEELLSQGKTSRTLFTLDGKNFTGKDFERFAAAHPMGTKRQLD 311
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK-KDWKTVKTAEEVSSKANQ 505
+ +++ P R L+E + +T + + +
Sbjct: 312 AFVVKSILDYENS-------HLEQKHPEFRRTLQEHRDHLLLAAITRRETHQVSLADSVA 364
Query: 506 LVLEYSKEGKNFRDIGKNLGASL---LTTNQINRMDNENKFFGYD----GISQVFSGPVE 558
L + + ++ ++ + K + I F+ P
Sbjct: 365 LKNFFKEHRTDYNWDSPRYRGAVLHGTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPAS 424
Query: 559 ----MVKCFPIENGLSYVVFK------------------VTNSKVGPVQEKDKFISYLTQ 596
++ G + V K V K + + +S L +
Sbjct: 425 PAIIRIEQGTFAEGDNVFVDKLVFKKGNFEPLKSYPFTVVLGEKKKGPESYKEIVSRLIE 484
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L L++ V ++ +++
Sbjct: 485 DYQNHLDALWTERLRASAKVEINQEVLKTV 514
Score = 42.2 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 48/466 (10%), Positives = 118/466 (25%), Gaps = 55/466 (11%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI + L F ++ ++ + Q + S F + + +
Sbjct: 3 KILVGALTCLFGF--IAGYARQ---DPVLMRINGQDISRSEFESFYHRNK-------PSG 50
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
V+ + A V + D V + GL F + + +
Sbjct: 51 VSGKEALKVCV-----DLFVDKKLKLHAAQRAGL-----------DTLSAFRAEMDNYHR 94
Query: 135 DVFVSRLAREGINE---KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ S L E ++ D +V M + P L + S
Sbjct: 95 SLSKSYLTDSSAEEACARKLYDQMKSRSISGEVRVMHIFRYLPQTALPHHLREAQALMDS 154
Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
+ ++ N + + ++ + + + +
Sbjct: 155 LYNVLKTNPDTDFRTLVDQ--YSDDKAESWISWLQTPQEFEEVAFSLKDGEYSQPFFTPK 212
Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA---------FQSLKKGKKFIQLAEE 302
L + + E + + + + +S + + E
Sbjct: 213 GLHIVKVTGRRELPPFEQIRDRLIRKLSYRPGADKGTEILVNKLKESYRYTPDKAAMEEL 272
Query: 303 QGKSLSDISLGSFSKEYIPDVSLA---DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + +L + + + K+ V+ Y +H+ P
Sbjct: 273 LSQGKTSRTLFTLDGKNFTGKDFERFAAAHPMGTKRQLDAFVVKSILDYENSHLEQKHPE 332
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
F + QE + + A + + L + +AL E
Sbjct: 333 FRRTLQEHRDHLLL-----AAITRRETHQVSLADSVALKNFFKEHRTDYN-----WDSPR 382
Query: 420 FAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ G + G + + L ++ ++ + T P +
Sbjct: 383 YRGAVLHGTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPAII 428
>gi|223939125|ref|ZP_03631008.1| hypothetical protein Cflav_PD1553 [bacterium Ellin514]
gi|223892174|gb|EEF58652.1| hypothetical protein Cflav_PD1553 [bacterium Ellin514]
Length = 329
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 20/224 (8%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
+ + +L + L G S + S + VG +++ + F + +
Sbjct: 15 VAVIISLLAMLPLFAGCSKKVV--VNSPVLAKVGSREITTADFEQEVQWRIKTQRSLPD- 71
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ +L ++ Q + GLE + V + K+ + +
Sbjct: 72 ------------KQALLQEMILHELNLQKAKVAGLE-NDAEVRRTYEDVLVARVKETQLT 118
Query: 134 HDVFVSRLAREGI---NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+ +++ + I +++ + ++ ++ + + + + R + +
Sbjct: 119 SRLEAVKVSADEIRAAYDRDIAKYTRPAKAKLALIYIKANSKLSAEKIAELEGRMHEAQK 178
Query: 191 SVD-YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
D S+ +++ Y +
Sbjct: 179 QAHTLATATPGFGRIAVDFSDDQPSRYQGGDVGWYDEGLVEYRW 222
>gi|89054302|ref|YP_509753.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Jannaschia sp. CCS1]
gi|88863851|gb|ABD54728.1| PPIC-type PPIASE domain [Jannaschia sp. CCS1]
Length = 422
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 25/169 (14%)
Query: 5 IRKASRTWVAKIFLVV---LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+R+ +R W A FL + L PF + + S V V V
Sbjct: 11 LRQMTRLWSALTFLCLGCALSAPF-----GGQAHAQNPFSAAVEVNDTIVTNFEIGQRI- 64
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ L +++ + L ++ ++ LV+ +G EA + +
Sbjct: 65 RFLQVLNAQG------------DLREQAIEALVNERLQLDAALAVGAEASPEAIETGLEE 112
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ F+ ++A+EGI + D ++ +VV G
Sbjct: 113 ----FAGRANLGPEQFLRQMAQEGIAPETVRDFVANGITWRNVVRARFG 157
>gi|213581234|ref|ZP_03363060.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
Length = 203
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
N + D SRLA +G+N Y + K + ++V V
Sbjct: 107 NNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRIT 151
>gi|217077588|ref|YP_002335306.1| hypothetical protein THA_1524 [Thermosipho africanus TCF52B]
gi|217037443|gb|ACJ75965.1| conserved hypothetical protein [Thermosipho africanus TCF52B]
Length = 542
Score = 47.9 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 46/546 (8%), Positives = 147/546 (26%), Gaps = 42/546 (7%)
Query: 5 IRK---ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS------STVV--SVGRQKVPF 53
+RK + + + ++W +S + S GS +V + +
Sbjct: 1 MRKWFEKAHGAIIWTIAIAFVAGIVVWSISSYVSSRKGSVKYNLEDSVAYLTKDGTALSE 60
Query: 54 S------SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
+S+ + L V L IL++L+ T+ + +
Sbjct: 61 EYWIFPWEVEDSYSKALSYYQISDVDPV----FEEPMLKTSILNDLIETKTILYYAQVNK 116
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ + E+ + K+ + ++ + ++ + + Y + + +
Sbjct: 117 ISPTKDEINQELDKQVADIEKN-----EQLLNYIKQKYGSVENYKKTIEPEVVKYLTIAK 171
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+ + ++ D + ++ S+ F N
Sbjct: 172 VRDTIASVSDDEMKSYYSENR---EDLMNKYDQANVDFVSFSSQASANDFINEAMNTGFY 228
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ + ++ K+ I + + + + + + + F
Sbjct: 229 QAATNMSLSVQNYDGFKRGIIDKKFEDSIFGSTNTIVGPIPLGSNFFVFNVKDVKTVDTF 288
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ + + + + ++ F K + D ++ + V+ S
Sbjct: 289 EKFTLSQGYQDVLNQLKSDKFRKAIDEFKKNENVSSEIIDPVYKT-----WNQVLTNSGT 343
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD--EIS 405
++ + + + + I A + E + E + +
Sbjct: 344 SLLNVYKKLNEMVLDESTRITVKLDAPVEIKAAFVTLVEKMQSATELTNDAVYKQILDDA 403
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+E + ++ D+ + K++ + K + + L V +
Sbjct: 404 SKESKLVLESIYNDYPESFIAAKKMKTLYPKRTDVLYNYYTKLYLKIKPYVEYGMLQSVV 463
Query: 466 VQIKESI------PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + +V D + + ++ A Q + + + + D
Sbjct: 464 NDFIDLYGGLNTLSEATDISLDWKAEVLYDLYEINKMLKDATTAEQYLEKLKEATPTYMD 523
Query: 520 IGKNLG 525
Sbjct: 524 FEAAFN 529
>gi|153956391|ref|YP_001397156.1| foldase-related protein [Clostridium kluyveri DSM 555]
gi|146349249|gb|EDK35785.1| Foldase-related protein [Clostridium kluyveri DSM 555]
Length = 247
Score = 47.9 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 6/233 (2%)
Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
+ + E + L+D E+ + +
Sbjct: 16 ENDFKNVVKRFPAERQQYFNTDEGKKQLLDEIISFELFYNYGKEIELEKDRDYLVKLETT 75
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
+ +++ + + + ++ + KA Q+ E
Sbjct: 76 KKELLIQETISKIMENIKVTDKEVEDYYTNNKSMYKKPENITARHILVDSFEKAAQISNE 135
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
K+G +F D K + N + + + F + + P++
Sbjct: 136 I-KKGLSFEDAAKKYSSCPSKAQGGNLGNFTRGQMVPEFETAAFQLEIG-ILSKPVKTQF 193
Query: 570 SYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
Y + KV + + K+ + L Q I LK +Y + +
Sbjct: 194 GYHLIKVEKKEKDSIKGFDKVKNAIKNGLLQEKRTLEYSKCINNLKDKYPIEI 246
>gi|297157982|gb|ADI07694.1| lipoprotein [Streptomyces bingchenggensis BCW-1]
Length = 246
Score = 47.9 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER-ARSVGLDKKILDNLVSGATLD 100
V ++ S + G + + A S L + L ++ ++
Sbjct: 51 AAAVVDGSRITVSQLQARVNDVRD---AQRGSAKSEQLVANSGQLSQNTLIRMIQFRVIE 107
Query: 101 QFIEDIGLEADHGRVWG 117
+ +D G+ V
Sbjct: 108 RAGKDNGVRVTRRDVQQ 124
>gi|296116659|ref|ZP_06835269.1| peptidyl-prolyl cis-trans isomerase [Gluconacetobacter hansenii
ATCC 23769]
gi|295976871|gb|EFG83639.1| peptidyl-prolyl cis-trans isomerase [Gluconacetobacter hansenii
ATCC 23769]
Length = 461
Score = 47.9 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 10/169 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V V + + + G V+ + L +I+ L+
Sbjct: 64 DSIVAIVNGSVLTKRDVDTR----GRLFALSSGLDVSKDVMVR--LRPQIVRQLIDERLR 117
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ + + + ++ I+ + N + +RLA++ I+ ID +
Sbjct: 118 MEAMLERHINVPVAQIAAAISGIE----QRNGMPENSLRNRLAQDSISLTTLIDQIRVQV 173
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ V+ M G Q + + + + + DP
Sbjct: 174 GWSQVLRMETGSRGRITATEIQQRTDALKREDGKPQYMISEIFVPVEDP 222
>gi|269958291|ref|YP_003328078.1| hypothetical protein ACIS_00053 [Anaplasma centrale str. Israel]
gi|269848120|gb|ACZ48764.1| hypothetical protein ACIS_00053 [Anaplasma centrale str. Israel]
Length = 403
Score = 47.9 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 9/90 (10%), Positives = 26/90 (28%), Gaps = 10/90 (11%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + + A + ++L +LV + L+
Sbjct: 29 AVVDGKAITSLDVSRRAQANAFFYK----------TAHAGSDRNEVLQSLVDESMLELEA 78
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+++G+ + E + G ++
Sbjct: 79 KELGMSVSKHELEAEAGKLFSVLGVCDELD 108
>gi|228921035|ref|ZP_04084370.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228838581|gb|EEM83887.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 293
Score = 47.9 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + K + Q +
Sbjct: 133 TDKDVKDNYKPEMKVSHILVKDEKTAKEIKEK-VNNGEDFAALAKQYSEDTGSKEQGGEI 191
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + + V P++ Y + KVT+ K + KDK +
Sbjct: 192 SSFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDI 250
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 281
>gi|167644889|ref|YP_001682552.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter sp. K31]
gi|167347319|gb|ABZ70054.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter sp. K31]
Length = 330
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 46/165 (27%), Gaps = 12/165 (7%)
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE----VSSKANQLVLEYSKEGKN 516
G + + E + K ++ + S + V + G +
Sbjct: 118 GDMLVENVVEKAVNENAIRGLYAEQQKLSKRSEEIRARQILVASQADGEAVKKLLAAGAS 177
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP----VEMVKCFPIENGLSYV 572
F + T + +F D + ++ + P + +
Sbjct: 178 FDALA----MERSTDPATRFNGGDLGYFTVDVMPAAYAVALKDAQKGALVGPFQTEGGWA 233
Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V +V + ++ + + + + D + ++ L+ V
Sbjct: 234 VLRVEDKRLEEPITLEAARPQIVRFLTYDQVRDLLEKLRGAAKVE 278
>gi|78222152|ref|YP_383899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
metallireducens GS-15]
gi|78193407|gb|ABB31174.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter
metallireducens GS-15]
Length = 330
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 45/366 (12%), Positives = 92/366 (25%), Gaps = 70/366 (19%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+R L V+F L+ A V V + ++ + L
Sbjct: 1 MRLNRSLTFGLFLLGVMFTLHLLQTPVSADEVNKTGKVVARVNGVPIYENALQSHLA-AL 59
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ GF + + KK L +L+ L Q + +V +
Sbjct: 60 ANKGRASGFARDPAKMNDYQ-KKKALYSLIDAELLRQASNQQQVTDLDAKVSKRLQEVK- 117
Query: 125 FHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
KF + F+ L G ++ +
Sbjct: 118 -----GKFPDEEAFLKNLQARGKTLDIFVAELRDGI------------------------ 148
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
Y + + +++ ++ PE ++ +IL +
Sbjct: 149 ---------RYDEYLTSKKVIGVPVPDEEIQKFYRDNPTSFSVPEQIKVRHILIEPDGST 199
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
+ + E K +
Sbjct: 200 AEAVAKAE--------------------------KKAGEIRNRVVRDKDFAAVAKEVSAC 233
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
+ S LG S+ +P + D + K + + + FG+ I V + KP
Sbjct: 234 STASSGGDLGYVSRGTMP--AEFDKVAFSLKLNEVSEPVRTKFGFHIMEVLDKKPVTVRP 291
Query: 364 FQEVKK 369
+ EV++
Sbjct: 292 YSEVRE 297
>gi|255530403|ref|YP_003090775.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus
DSM 2366]
gi|255343387|gb|ACU02713.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter heparinus
DSM 2366]
Length = 455
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 22/182 (12%), Positives = 52/182 (28%), Gaps = 11/182 (6%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+ ++ F+ L+ + V +G + S + Q +NS
Sbjct: 4 IFLIASGFICLFLNAQAQKKNIDKVVAVLGSNIILLSDLNQQYAQF-----------LNS 52
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+ IL +++ L Q E + D G+V E+ + + + +
Sbjct: 53 GNTDDPKVKCYILQQMLAQKLLKQQAEIDSVMVDDGQVDEEVEKRMRYQIQRAGGQERLE 112
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ E + L + + + L + + Y ++ D
Sbjct: 113 QFLNRSVLQYKDEIRPDIKEQLISNKMQAKITQDVSITPLEVKKYFDGYQKDSLPDIPTE 172
Query: 198 NN 199
Sbjct: 173 FE 174
>gi|256545179|ref|ZP_05472545.1| foldase protein PrsA 1 [Anaerococcus vaginalis ATCC 51170]
gi|256399220|gb|EEU12831.1| foldase protein PrsA 1 [Anaerococcus vaginalis ATCC 51170]
Length = 339
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 29/244 (11%), Positives = 61/244 (25%), Gaps = 17/244 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V VG +K+ S+ + M+ A L I+ LV +
Sbjct: 48 DDAVALVGGEKITKDSYKDEMSFYSAML------------ASRQQLKPSIVQMLVQDKLI 95
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
++ ++ D + + + G KF L ++ ++ + K
Sbjct: 96 ADDMKKNNVKVDDKALDDKFLQYVQQFGGQEKFDK-----MLEDYNMSSDKFKETIKKDE 150
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
F + + + S A A L +
Sbjct: 151 IYQKHRAWFEEKNPVDEKQIKKYYEENKDTLSQVKASHILVADEATAKQVKEKLDNGEDF 210
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
K + + D+ K + +A K E + ++
Sbjct: 211 AKLAKEYSKDTANAEKGGDLGYFTKDKMVKEFADKAFSMKKDEVSDPVKTSYGYHIIKVT 270
Query: 280 QKEA 283
K+
Sbjct: 271 DKKD 274
>gi|228945944|ref|ZP_04108286.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228813692|gb|EEM59971.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
Length = 288
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+++ + K + K + A + V E G++F + K + Q +
Sbjct: 128 TEKDIKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 186
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 187 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 245
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 246 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 283
>gi|294678213|ref|YP_003578828.1| chaperone SurA [Rhodobacter capsulatus SB 1003]
gi|294477033|gb|ADE86421.1| chaperone SurA [Rhodobacter capsulatus SB 1003]
Length = 418
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 26/208 (12%), Positives = 57/208 (27%), Gaps = 28/208 (13%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS--TVVSVGRQKVPFSSFIN 58
M+ + + + + L + G + L + + ++V +
Sbjct: 1 MM----RHFPSLLGWVLTAGLAL-----GTAAPLQAQATGDFAPAITVNGLAISGYEIAQ 51
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ +G + + K + L+ + +G+ V
Sbjct: 52 -----RARFMELLGATGD--------VRKMAEEALIDDRLQGWKAQSLGISVSREAVTRG 98
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+A S + F+ LA G+ + Y D T + +VV GG R
Sbjct: 99 MAEFAA----RANLSAEDFLKALAGAGVEAQTYRDFVTSGVIWREVVKTTYGGGRIQISD 154
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIA 206
+ + E + I
Sbjct: 155 AEIDRALAHEAPKGAEPEPPKVLISEIV 182
>gi|119898534|ref|YP_933747.1| hypothetical protein azo2243 [Azoarcus sp. BH72]
gi|119670947|emb|CAL94860.1| conserved hypothetical secreted protein [Azoarcus sp. BH72]
Length = 299
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 9/86 (10%), Positives = 25/86 (29%), Gaps = 15/86 (17%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
D S S + V + + S + ++ ++++ +L+
Sbjct: 22 DGARSGSDEAVAARVNDRAISVSQVDQAIPRD---------EPMSADDIARA--RSAVLE 70
Query: 92 NLVSGATLDQF--IEDIGL--EADHG 113
+L+ + Q + L
Sbjct: 71 SLIDEELMVQKANARRLDLEPRVSEE 96
>gi|261867180|ref|YP_003255102.1| SurA [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412512|gb|ACX81883.1| SurA [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 310
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ ++ Q+ + F D L+ + +Q
Sbjct: 185 QAKAQLEQIRADIIVGKTTFADAALKYSKDYLSGANGGSLGYAFPEMYVGPFNQAVRTTK 244
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS---VIAYLKSQY 614
V P + + + +VTN++ E Q++N+ L DS + L+ +
Sbjct: 245 PGVISAPFKTEFGWHILEVTNTRQADRTEDAYRQKAYEQIVNQQLQDSALDWVQALRKRA 304
Query: 615 SVT 617
+
Sbjct: 305 DIK 307
Score = 43.7 bits (100), Expect = 0.084, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 48/157 (30%), Gaps = 28/157 (17%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K L F++ + V +V + S ++
Sbjct: 5 LKSVLFAAIGFFVLA-----AHVHAEEKVVATVNGIPILESQVQSAIN------------ 47
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ + L+ ++ +DQ +++ ++ ++ ++ I N +
Sbjct: 48 -------KKTNDRQAALNKVIDDILVDQAVKESDVKVNNAQIDQIIEGIAA----QNGLT 96
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ L +GI+ + Y + + ++V +
Sbjct: 97 FGQLLDALDYQGISYRAYRQQIAQQVMMSEVRNHAIS 133
>gi|89100557|ref|ZP_01173417.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911]
gi|89084744|gb|EAR63885.1| post-translocation molecular chaperone [Bacillus sp. NRRL B-14911]
Length = 293
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 30/132 (22%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+ + K + + + ++ A F +S V SVG + +
Sbjct: 1 MMGFLTKK---------IGLGILVLILAAAGTAAFFLSKEPAVASVGSESIKKEEL---- 47
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ ++ G + LD LV+ ++ + + + E+
Sbjct: 48 ---YSLLVKQYGD--------------EALDALVTDKIIEMEAKKEKVTISNKEKEEELK 90
Query: 121 RSPLFHGKDNKF 132
+G + F
Sbjct: 91 NLKESYGGEEGF 102
>gi|282878158|ref|ZP_06286955.1| PPIC-type PPIASE domain protein [Prevotella buccalis ATCC 35310]
gi|281299736|gb|EFA92108.1| PPIC-type PPIASE domain protein [Prevotella buccalis ATCC 35310]
Length = 476
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 46/467 (9%), Positives = 122/467 (26%), Gaps = 29/467 (6%)
Query: 157 KMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQW 216
+ ++R++ + + + + V+ + S
Sbjct: 33 QPITRSEFEYSYNKNNAEGVIDKKTVDEYVDLFINYKLKVMAAQAAKMDTARSFKTEFAT 92
Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
+ + + +++ + ++ L + Q
Sbjct: 93 YRDQQIRPAMITDADVEQRAREIYRESQQRVDGVGGLVKPAHILFGIRQTDGEDKKNQAK 152
Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
+ + QL++++G + L K + + +KG
Sbjct: 153 QRADSVYNALLKGADFAALARQLSDDRGSAEQGGELPWIEKGQTLKE--FEDMAFSLRKG 210
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
+ + GY I + + F + R + ++ +
Sbjct: 211 ELSKPFLSPAGYHIVLLKDKGKFFPYDSLRTSILRFIEQRGIREQIISQKIETLAKAAGP 270
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
T+ + ++++ + + Y + LL + SK +
Sbjct: 271 NVTADEVLAKKCAEMVAK----------DSNLKYLIQEYHDGLLLFEISSKEFWSKAQSD 320
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
Y + K E+ + K + K + +
Sbjct: 321 ERGQADYF------KKNKKKYKWEQPRFKGIAYYTKDKKDVKAVRKVVKQL--------P 366
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
F + L ++ + I R+ E F S V +E Y
Sbjct: 367 FDQWTEKLHSTFNN-DSILRIKVEKGIFKAGDNSLVDRNVFGKKVLLKLEKDYPYA--AT 423
Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
K+ ++ + + +L + L+ QY+VTV+ +++
Sbjct: 424 YGKKLKAPKDYRDVKAQVVADYQDELEKQWVERLRKQYAVTVNRSVL 470
>gi|213611260|ref|ZP_03370086.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 200
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
N + D SRLA +G+N Y + K + ++V V
Sbjct: 107 NNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRIT 151
>gi|312113659|ref|YP_004011255.1| hypothetical protein Rvan_0880 [Rhodomicrobium vannielii ATCC
17100]
gi|311218788|gb|ADP70156.1| hypothetical protein Rvan_0880 [Rhodomicrobium vannielii ATCC
17100]
Length = 365
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 21/200 (10%), Positives = 49/200 (24%), Gaps = 44/200 (22%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWK-------------------QELGMISQKIGFVVNSER 79
+ VV V + + + Q + +
Sbjct: 29 AQNIVVLVNDEPITSGDIAQRTRWMARTSGFGDRMKALLTGDSIKERFRQLMIKANPRSQ 88
Query: 80 ARSVGL------------------------DKKILDNLVSGATLDQFIEDIGLEADHGRV 115
A + K++++ L+ Q + + + V
Sbjct: 89 AEAEQTAERIKKQLVEEAKGRVLSEGGGTSRKQVIETLIEDKLKLQAAKRLEITVSDKEV 148
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
+A+ G K + F + +GI+ K + L+ DV+ G +
Sbjct: 149 EEVLAQ-RAGGGDGKKPQLNEFYQQFEADGISRKTVQNIIRAQLAWRDVIRRQYGPRIAA 207
Query: 176 NLLLDQAKRFYFENRSVDYI 195
L + + +
Sbjct: 208 MLAALPTDDQKPADGDIQFD 227
>gi|241763913|ref|ZP_04761956.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
delafieldii 2AN]
gi|241366808|gb|EER61240.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax
delafieldii 2AN]
Length = 261
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 19/189 (10%), Positives = 58/189 (30%), Gaps = 3/189 (1%)
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
+++ L + L + Q ++ + + E K
Sbjct: 73 MQEAQKRGLEASPDYKVQMELARQTILIRELFADYQKNNTVTDAEIQAEYDKFVAANSGK 132
Query: 492 TVKTAEEVSSK--ANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDG 548
K + + K + ++ K+G F +I K + + + +
Sbjct: 133 EYKASHILVEKEADAKAIIASIKKGAKFEEIAKKQSKDPGSGAKGGDLDWANPASYVSEF 192
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA 608
+ + P+++ + V ++ + + + + D+ + Q + + L
Sbjct: 193 TEALIKLDKGKMTDAPVKSQFGWHVIRLDDVRQAQLPKLDEVKPQIAQQLQQQKLAKFQE 252
Query: 609 YLKSQYSVT 617
L+++ V
Sbjct: 253 ELRAKAKVE 261
>gi|212696154|ref|ZP_03304282.1| hypothetical protein ANHYDRO_00690 [Anaerococcus hydrogenalis DSM
7454]
gi|212676783|gb|EEB36390.1| hypothetical protein ANHYDRO_00690 [Anaerococcus hydrogenalis DSM
7454]
Length = 306
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 20/225 (8%), Positives = 55/225 (24%), Gaps = 5/225 (2%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
++ + L + + V V Q + + + +K G +
Sbjct: 14 IIAIISLFCLILVSCSSKIDKKNNVAYVDGQAISKNLYEKELSYYQKFYLKKYGNDYLDK 73
Query: 79 RARS-----VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ ++ L+ ++LD+L+ + + ++ I +
Sbjct: 74 KTKNGLTNYERLESELLDSLIQDQIMINDLRKNKVKITKNDSLEVIEDLSKKSMSKDSLI 133
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+V + +E Y+D K + +
Sbjct: 134 ENVKSFGADEDEFDEISYMDSIRKKHMDYYFSNDDTKDSEIVDYFKENKFLQKKYKYDCL 193
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFD 238
+ + A+ N+ + + K Y
Sbjct: 194 IFDNESEAIKIRANIKNSQDFKKYLNSKVRNYDIYRSDFVYNDDF 238
>gi|332703851|ref|ZP_08423939.1| hypothetical protein Desaf_2729 [Desulfovibrio africanus str.
Walvis Bay]
gi|332554000|gb|EGJ51044.1| hypothetical protein Desaf_2729 [Desulfovibrio africanus str.
Walvis Bay]
Length = 374
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 13/102 (12%), Positives = 30/102 (29%), Gaps = 7/102 (6%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L+ L ++ S + V + + + + + +
Sbjct: 7 LLMALLASIIVTACSSDRSEPG---VIAMVNGRPIHLNQLEYKYD--IMYLDSTDDLNPT 61
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ R+ IL +L+ + Q + D GLE +
Sbjct: 62 VNQLRTDY--GTILSDLIIQELIIQELADRGLEVTDEELNKA 101
Score = 37.5 bits (84), Expect = 6.5, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 38/123 (30%), Gaps = 8/123 (6%)
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ +G+ DI L ++ ++ ++ + + E
Sbjct: 190 ATQLFSKGEAAADIAAKL-----KEVEVRQLRMREDRLPASWLNALANLEPGEASSVLTE 244
Query: 567 NGLSYVVFKVTNSKV---GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ + V S P Q L +D ++ +A ++T+ +L+
Sbjct: 245 ESKFHRLILVERSPAKVLDPTQAYPLVEQVLLDQKMRDAFNAWLARKLEVATITISKHLL 304
Query: 624 QRY 626
++
Sbjct: 305 EQV 307
>gi|283850615|ref|ZP_06367902.1| hypothetical protein DFW101DRAFT_0472 [Desulfovibrio sp. FW1012B]
gi|283573858|gb|EFC21831.1| hypothetical protein DFW101DRAFT_0472 [Desulfovibrio sp. FW1012B]
Length = 520
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 6/112 (5%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + LG + E+ R+ +L +++ + Q
Sbjct: 37 VVAVVNGAPIRLPDLEARHG--LGRLGAPEAGNPAVEQLRAEY--GAVLADMIVARLVRQ 92
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
+ +GL V A+ + + S D F L E I+ + +
Sbjct: 93 ELARLGLAVTPAEVEAAEAQVRADYATGD--SGDAFERMLLEERIDLGRWRE 142
Score = 44.5 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 11/138 (7%), Positives = 37/138 (26%), Gaps = 10/138 (7%)
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
+ + + + + K G++ + G ++ K
Sbjct: 185 RVRLAEVRGREAEAVQAALTAWRKSGQS-ASLESLDGITVREAT------VPEKNLAEPW 237
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV---GPVQEKDKFISYLTQMMNKDLLDS 605
V + ++ + ++ P + + + L + +
Sbjct: 238 RQAVKGLKPGEASGLLGADTETWFLVVLSREPATVFDPAKAYARVEAELGARKLEKTFAA 297
Query: 606 VIAYLKSQYSVTVHDNLI 623
+A + +TV+ L+
Sbjct: 298 WLAEALAGARITVNRQLL 315
>gi|312792461|ref|YP_004025384.1| hypothetical protein Calkr_0200 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179601|gb|ADQ39771.1| hypothetical protein Calkr_0200 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 236
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 18/176 (10%), Positives = 46/176 (26%), Gaps = 4/176 (2%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINS--WKQELGMISQKIGFVVNSERARS--VGLDKKILDN 92
+ S+ + V + + +++ K+G + + K++LD
Sbjct: 48 SNNSNIIAKVDGIPIYKKDLDIAELYEKLRFNNQAKLGAITKQNTLVTPYQKTKKELLDE 107
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
LV L + + G + + Y
Sbjct: 108 LVERKVLVESAKKEGYFVSKEEAEAYFNNVKTTIDDVISGKIKGDIESAKQAKELLDLYK 167
Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
++ V+G + + S L +A + E+ + ++
Sbjct: 168 TQLSENEFNEKVIGAYQEILTISKYLKAKADEYIKEHPNASTEEIHKYINDFKNKV 223
>gi|306520092|ref|ZP_07406439.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-32g58]
Length = 323
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 19/184 (10%), Positives = 53/184 (28%), Gaps = 6/184 (3%)
Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS-----ERAR 81
+ G+ + ++ V ++ + + + G ++ ++
Sbjct: 14 MVGILSLMMVGCN-KSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKG 72
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
L+ I+ +V L Q +D GL V + + + + + +
Sbjct: 73 RNKLENVIISFMVDNELLYQEAKDKGLTPSKSEVDSKYQELEDKMNLNTSYKEKMDKAGV 132
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
+E + ++ D + + + K F E S I+++
Sbjct: 133 DKEYLKQEISRDLAIDKNKKAFEDRINISDNDMEAYYTSHKKDFNVEEVSASQILISTLD 192
Query: 202 VPAI 205
Sbjct: 193 KNKK 196
>gi|293606739|ref|ZP_06689092.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
43553]
gi|292814889|gb|EFF74017.1| peptidyl-prolyl cis-trans isomerase [Achromobacter piechaudii ATCC
43553]
Length = 352
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 20/246 (8%), Positives = 63/246 (25%), Gaps = 6/246 (2%)
Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
+ ++ M++ R + G + + A+ E+ + +
Sbjct: 92 PQARQQLQDNRAGMEQWLRARLAEKALIEQARAQGWQDQPEIRRAVQAAEERIVVQSYLE 151
Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
+ + A + + +A +L
Sbjct: 152 SVSRAPDGYPTDADLQAAYERAKPQLAVPAQYHVSQIFLPAPLGDADAVAATRKQALELT 211
Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN-KFFGYDGISQVFSGPVEMVKCFPIE 566
+F + + + Q + + + V P++
Sbjct: 212 KRAQAPKADFAALAQAHSRDETSRAQGGDIGFVPLAQLTPEMRPVIEQMKAGEV-SAPVQ 270
Query: 567 NGLSYVVFKVTNSKVGPVQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+ + + K+T + V ++ + L + + + L + +VT+
Sbjct: 271 SAAGFHILKLTALRPASVTPFEQVSPQLRTALRSQRQELAARAYMEGLLNAGTVTIDGAA 330
Query: 623 IQRYLD 628
+ L+
Sbjct: 331 LNAALE 336
>gi|196033913|ref|ZP_03101324.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus W]
gi|195993593|gb|EDX57550.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus W]
Length = 283
Score = 47.5 bits (110), Expect = 0.006, Method: Composition-based stats.
Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 9/158 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+++ + K + K + A + V E G++F + K + Q +
Sbjct: 123 TEKDIKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KD +
Sbjct: 182 TGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDI 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDNLIQRYLD 628
Q +D V+ L + V+D + +
Sbjct: 241 EQQRLQDTTGKWKQQVVNELLKDADIKVNDKEFKNTFE 278
>gi|254472475|ref|ZP_05085875.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Pseudovibrio sp. JE062]
gi|211958758|gb|EEA93958.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Pseudovibrio sp. JE062]
Length = 289
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 4/174 (2%)
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+K + ++ DE++A Y+ Y ++ + EA + + L+ G F +
Sbjct: 117 YFQKYIQSAVTEDEVKAAYDAEYANYQGAPEINAAHILVEKEDEAKDIIKQLEGGADFAE 176
Query: 299 LAEEQ---GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
LA+E+ + LG F K + + F+L + FGY +
Sbjct: 177 LAKEKSTGPSGPNGGDLGFFGKGQMV-PEFETAAFALKPGEFTKEPVQTQFGYHVILNKE 235
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
+ + + + I ++ + K E ++E + + + + + K
Sbjct: 236 ARTQPAPTLEAAEGQIRQELVLAKFREVLEELKAKNTVEIIGADADEAKAEESK 289
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 33/298 (11%), Positives = 76/298 (25%), Gaps = 17/298 (5%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+RK + + + + L + + DA + V VG + + + +
Sbjct: 2 LRKFTGILGSSVAVAALAISLNVAQAQDAETAPDLDKPVAKVGNSVITEADLAYAAQDYA 61
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ + V K + D LV L + E+ L R
Sbjct: 62 QQLQR-----VPPTE-----WRKVLTDVLVEMKLLAEAGEEEKLAETDD-----FKRLMA 106
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
F + + + + + E E Y + +
Sbjct: 107 FERTRAL--RNAYFQKYIQSAVTEDEVKAAYDAEYANYQGAPEINAAHILVEKEDEAKDI 164
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
D+ L + P+ L + + + F +
Sbjct: 165 IKQLEGGADFAELAKEKSTGPSGPNGGDLGFFGKGQMVPEFETAAFALKPGEFTKEPVQT 224
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
+ + + + E + ++LV +E E ++ + A+E
Sbjct: 225 QFGYHVILNKEARTQPAPTLEAAEGQIRQELVLAKFREVLEELKAKNTVEIIGADADE 282
>gi|167562430|ref|ZP_02355346.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
oklahomensis EO147]
gi|167569612|ref|ZP_02362486.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
oklahomensis C6786]
Length = 259
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 10/180 (5%)
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-------- 498
+ P K V + + I++ + E+ K+ E
Sbjct: 81 NRPDVKAQIVVAQQTAVLRALIEDFLKKNQPSDAELKARYDDLVKSAAGREYHLHHILVD 140
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPV 557
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 141 NEQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQK 199
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + ++ + Q M + L + L+ Q V
Sbjct: 200 GQMTDAPVKTQFGWHIIRVDDIRSITPPPFEQVKQQIAQQMVQQKLQAFEEGLRQQAKVQ 259
Score = 37.9 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + Q + L++ + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADAMIAQLVQQGQQ-----------DTPQLEQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIKRGI 79
>gi|322379924|ref|ZP_08054201.1| peptidyl-prolyl cis-trans isomerase [Helicobacter suis HS5]
gi|321147622|gb|EFX42245.1| peptidyl-prolyl cis-trans isomerase [Helicobacter suis HS5]
Length = 318
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 12/145 (8%)
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKN-----FRDIGKNLGASLLTTNQINRMD-- 538
V+++ K + + A +++ E +K K F DI T N N D
Sbjct: 171 VQQEAKARHILVKTEADAKRVISELNKTPKTRIEKEFIDIANRESIDPNTKNSKNGGDLG 230
Query: 539 -NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
+ + + VF+ P++ Y V + + ++ + +
Sbjct: 231 KFQKNQMAPEFSNAVFALKPGSYTKTPVKTEFGYHVIYLMSKNEPKTPTFEQARQTIIGI 290
Query: 598 MNKDLLDSV----IAYLKSQYSVTV 618
+ + + L+ + +
Sbjct: 291 LKEHQFQEYVKGELEKLRKNVRINI 315
>gi|229190397|ref|ZP_04317398.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
gi|228593181|gb|EEK50999.1| Foldase protein prsA 1 [Bacillus cereus ATCC 10876]
Length = 293
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + K + Q +
Sbjct: 133 TDKDVKDNYKPEMKVSHILVKDEKTAKEIKEK-VNNGEDFAALAKQYSEDTGSKEQGGEI 191
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KDK +
Sbjct: 192 SGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDI 250
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 281
>gi|326318802|ref|YP_004236474.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323375638|gb|ADX47907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 299
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 41/130 (31%), Gaps = 7/130 (5%)
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
+ + + K G +F + K A + + E + F+
Sbjct: 162 EKIEQELKGGADFAQLAKERSADKGSAAKGGDLGFFEAGKMVPEFDKAAFALTKPGQLSG 221
Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV----IAYLKSQYSVTVH 619
+E+ Y + ++ + D+ S L Q + ++ L+ + + +
Sbjct: 222 IVESKFGYHILQLEGRHAARTRSFDEVRSELMQEVRANVQQEARVADAQALQQEAKI--N 279
Query: 620 DNLIQRYLDG 629
I+ + G
Sbjct: 280 KEAIEAFAAG 289
>gi|326940021|gb|AEA15917.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 283
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 123 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + K+K L
Sbjct: 182 SGFAPGQTVKEFEEAAYKLDAGQV-SDPVKTTYGYHIIKVTDKKELKPFDEVKEKIRKDL 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 271
>gi|257459188|ref|ZP_05624307.1| putative periplasmic protein [Campylobacter gracilis RM3268]
gi|257443573|gb|EEV18697.1| putative periplasmic protein [Campylobacter gracilis RM3268]
Length = 296
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 19/184 (10%), Positives = 53/184 (28%), Gaps = 25/184 (13%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ + V + + + + G + ++ L+
Sbjct: 22 NGVIAVVDDEPITGYEL--------ARVQKLTGASP-----------QAAMEILIGQKLQ 62
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
I+ G+ + + + NK S D + + ++GIN ++ + + L
Sbjct: 63 QSEIKRRGIAVNDAEIDARLKAI----ADQNKLSLDQLKTAVQKQGINYDDFKANVRRTL 118
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ G + + + ++ S + ++ + S A L +
Sbjct: 119 LEEKLYGSIFAD--VQHRTTPENVKKFYSQNSSLFTTFDSITLTRYIAKSQAPLDRIRTN 176
Query: 220 YKDN 223
K
Sbjct: 177 PKLR 180
>gi|110589212|gb|ABG77115.1| peptidyl-prolyl cis-trans isomerase [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 241
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 33/109 (30%), Gaps = 4/109 (3%)
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
L++ Q +G+ D + IA ++N S + L +GIN +
Sbjct: 1 LITNQLQLQTATRLGITVDDATLSRTIASI----ARNNNISLNRLRETLESDGINFTHFR 56
Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
+ + + + V ++ S + +H
Sbjct: 57 EKLRREIIINRLRQKEVVNRIVITEQDVRSHMAREAGSSRQRAAFHIQH 105
>gi|1074599|pir||A64018 hypothetical protein HI1003 - Haemophilus influenzae (strain Rd
KW20)
Length = 60
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 1 ML-EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS 45
ML E + + + ++K L ++ V FL+ G+S LFS S +
Sbjct: 1 MLIEKMHNLTNSKISKFILGLIAVSFLVGGMSGYLFS-SNDTYAGK 45
>gi|317050626|ref|YP_004111742.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
indicum S5]
gi|316945710|gb|ADU65186.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
indicum S5]
Length = 319
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 12/128 (9%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD---NLVSG 96
V + + K+ + ++ + E+AR + + +L+ V
Sbjct: 28 DGIAAVVNGVPITIQEVRQANKEHIERATR----GLADEQAREATM-QMLLEGTHQKVEQ 82
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
L+ + + +V I + +N S S LA EGI+ + Y
Sbjct: 83 MLLEDYGRRNRIFISAQQVEEAINQVAA----NNNVSRSALESMLADEGISMESYRRDIR 138
Query: 157 KMLSRTDV 164
L +
Sbjct: 139 VQLLVMQI 146
>gi|206971674|ref|ZP_03232624.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH1134]
gi|206733659|gb|EDZ50831.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus AH1134]
Length = 283
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + K + Q +
Sbjct: 123 TDKDVKDNYKPEMKVSHILVKDEKTAKEIKEK-VNNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KDK +
Sbjct: 182 SGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDI 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 271
>gi|88803462|ref|ZP_01118988.1| PPIC-type PPIASE domain protein [Polaribacter irgensii 23-P]
gi|88781028|gb|EAR12207.1| PPIC-type PPIASE domain protein [Polaribacter irgensii 23-P]
Length = 544
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 49/353 (13%), Positives = 99/353 (28%), Gaps = 31/353 (8%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI L + F+ F++ S T+V++ + F +++ L
Sbjct: 3 KIVLSICFLIFVL------NLSSQNKKTLVTINNEITTVEDFKRIYEKNLD--------A 48
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK--DNKF 132
++S+ A+SV KK L + + L + ++ +
Sbjct: 49 IDSKEAKSV---KKNLTLYIDYRLKVAEAYHLKL----DTLRSYQKEIKMYREQLMAPYL 101
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
F+S L +E +L RT + + N + R
Sbjct: 102 QDTTFISDLVKEIYFRTTNEVKAKHILVRTSEDAVPRDTLIAYNKITAIRNRIINGEDFE 161
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
V + V A DP + + + +
Sbjct: 162 AVAVAVSEDVSAQDDPRSGRKGNKGDLGYFDAFKMVSSFEDVAYTTKIGAVSHPFKTQFG 221
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPN---QKEADEAFQSLKKGKKFIQLAEEQGKS--- 306
+ + + + E + +++ + F +LA +
Sbjct: 222 FHILKVDDFRTSKGALEVAHILITDTTAVGKSKIAEVYAKIQENETFEKLAAQFSMDTSS 281
Query: 307 -LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+ L F + D+ FSL K+GD + FG+ I + P
Sbjct: 282 KRNGGKLNKFGIGKMVKP-FEDAAFSLQKEGDVSKPFRTRFGWHIVKLLAKYP 333
>gi|228939473|ref|ZP_04102061.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228972327|ref|ZP_04132938.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978940|ref|ZP_04139306.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
gi|228780814|gb|EEM29026.1| Foldase protein prsA 1 [Bacillus thuringiensis Bt407]
gi|228787344|gb|EEM35312.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228820173|gb|EEM66210.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
Length = 293
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 133 TEKDVKDNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 191
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + K+K L
Sbjct: 192 SGFAPGQTVKEFEEAAYKLDAGQV-SDPVKTTYGYHIIKVTDKKELKPFDEVKEKIRKDL 250
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 281
>gi|90424410|ref|YP_532780.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB18]
gi|90106424|gb|ABD88461.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB18]
Length = 347
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 14/140 (10%), Positives = 45/140 (32%), Gaps = 9/140 (6%)
Query: 493 VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQV 552
T + + N++ + G +F I + + + + +Q+
Sbjct: 209 KATEDNANKSLNEIQRQLKTPGADFAAIANENDGK--NSGDLGWLAENQ--IRPEIRAQL 264
Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQMMNKDLLDSVIA 608
+ P+ + + K+ ++K + +D+ I + L + +
Sbjct: 265 MGMAKNAI-SDPVRLDDGWHILKLIDTKAAYTRTLPEVRDQLIQQMRAERATMLRQAYLT 323
Query: 609 YLKSQYSVTVHDNLIQRYLD 628
L ++ +++ + D
Sbjct: 324 ELLKRHPPVLNELALSNLFD 343
>gi|265767845|ref|ZP_06095377.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
gi|263252517|gb|EEZ24045.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
Length = 517
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 39/440 (8%), Positives = 105/440 (23%), Gaps = 45/440 (10%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + Y S +K + +Y
Sbjct: 89 MENYHRALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREA 148
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
++ F L + + +G + + K G+
Sbjct: 149 QILMDSLYHVLETHPDIDFRTLVNKYSDDKKEFWMGWLQTSQEF-----EEVAFSLKDGE 203
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
++ G I V+ + F++++ ++ +++ ++K E + +
Sbjct: 204 YSKPFFTPKGIQIIKVTGRRE--IPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSTCQ 261
Query: 398 GTSMDEISRREKIVSIDLPL-VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
T + GK GK+ + + +
Sbjct: 262 YTPDKAGMEELLALGRTSRTLFTLDGKSFTGKDFERFADAHPMGIKRQLNAFVVKSILDY 321
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVK-KDWKTVKTAEEVSSKANQLVLEYSKEGK 515
++++ P L++ D+ ++ + S + L + +
Sbjct: 322 ENN-------RLEQKYPDFRLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRT 374
Query: 516 NFRDIGKNLGASL---LTTNQINRMDNENKFFGYD----GISQVFSGPVEMVKC----FP 564
++ ++ + K + I F+ P
Sbjct: 375 DYNWDSPRYRGAVLHGTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGT 434
Query: 565 IENGLSYVVFK------------------VTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
G + V K V K + + I L + L
Sbjct: 435 FAEGDNVFVDKLVFKKGDFEPLKSYPFTVVLGEKKKGPESYHEIIPQLIRDYQNHLDALW 494
Query: 607 IAYLKSQYSVTVHDNLIQRY 626
L++ V ++ +++
Sbjct: 495 TERLRASAKVEINQEVLKTV 514
Score = 40.2 bits (91), Expect = 0.98, Method: Composition-based stats.
Identities = 55/491 (11%), Positives = 119/491 (24%), Gaps = 52/491 (10%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI + L F ++ + Q + S F +
Sbjct: 3 KILVGTLTCLF-----GAIAGHAQQDPVLMRINGQDITRSEFERFCHRNK---------- 47
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGL-EADHGRVWGEIARSPLFHGKDNKFS 133
S A L + D V + GL F + +
Sbjct: 48 -PSGIAGKETLKRCA-DLFVDMKLKLSAAQKAGLDTVSD------------FRTEMENYH 93
Query: 134 HDVFVSRL---AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
+ S L A + K+ D + +V M + P L +
Sbjct: 94 RALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREAQILMD 153
Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
S+ +++ + + + + + E++ +++ L D +
Sbjct: 154 SLYHVLETHPDIDFRTLVNKYSDDKKEFWMGWLQTSQEFEEVAFSLKDGEYSKPFFTPKG 213
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
++ + + F + + E + K K Q ++ +
Sbjct: 214 IQIIKVTGRREIPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSTCQYTPDKAGMEELL 273
Query: 311 SLGSFSKEYIPD----------VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+LG S+ AD+ K+ V+ Y + P F
Sbjct: 274 ALGRTSRTLFTLDGKSFTGKDFERFADAHPMGIKRQLNAFVVKSILDYENNRLEQKYPDF 333
Query: 361 TVSFQEVKKD---IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
++ Q+ + D A R ++ + + R V
Sbjct: 334 RLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRTDYNWDSPRYRGAVLHGTHK 393
Query: 418 VDFAGKDVKGKEVA---AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM---WVQIKES 471
K++ + T A D ++ + +
Sbjct: 394 KTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGTFAEGDNVFVDKLVFKKGDF 453
Query: 472 IPARDRKLEEV 482
P + V
Sbjct: 454 EPLKSYPFTVV 464
>gi|228952655|ref|ZP_04114731.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|229079483|ref|ZP_04212023.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
gi|229178680|ref|ZP_04306044.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
gi|228604838|gb|EEK62295.1| Foldase protein prsA 1 [Bacillus cereus 172560W]
gi|228703853|gb|EEL56299.1| Foldase protein prsA 1 [Bacillus cereus Rock4-2]
gi|228807121|gb|EEM53664.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
Length = 293
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + K + Q +
Sbjct: 133 TDKDVKDNYKPEMKVSHILVKDEKTAKEIKEK-VNNGEDFAALAKQYSEDTGSKEQGGEI 191
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KDK +
Sbjct: 192 SGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDI 250
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 281
>gi|254503520|ref|ZP_05115671.1| SurA N-terminal domain family [Labrenzia alexandrii DFL-11]
gi|222439591|gb|EEE46270.1| SurA N-terminal domain family [Labrenzia alexandrii DFL-11]
Length = 314
Score = 47.5 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 15/168 (8%), Positives = 38/168 (22%), Gaps = 15/168 (8%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V V + + + + ++ + L+
Sbjct: 38 VIVNDVPITDYDITQRARLITLTLRKSASVA-----------RREAVQELIDDQVKVGEA 86
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+G+ V A ++ K + L + G+ + L
Sbjct: 87 TRMGMSVSDSEVDNAYANI----ARNVKLTPARLTQALGQGGVRAETLKKRLRAQLIWGK 142
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+V G + A + + + + P N+
Sbjct: 143 LVRARFSGGVDVDESDIIAALRKTDEEDRATSIEYDLQRVIVVVPKNS 190
>gi|312860326|gb|ADR10202.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium enrichment
culture clone F5-11]
Length = 290
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSW---KQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
SG+ V +V + +P F +QE ++ G E + + ILD L+
Sbjct: 39 SGNEPVATVNGRPIPRGVFEVMLGVTRQEKASEAEATGQTAQPELTEAD--HQAILDRLI 96
Query: 95 SGATLDQFIEDIGLEADHGRVWG 117
+ + Q G D +
Sbjct: 97 TLEAVVQEAAKQGFGTDDAFLHE 119
>gi|90420209|ref|ZP_01228117.1| peptidyl-prolyl cis-trans isomerase [Aurantimonas manganoxydans
SI85-9A1]
gi|90335543|gb|EAS49293.1| peptidyl-prolyl cis-trans isomerase [Aurantimonas manganoxydans
SI85-9A1]
Length = 320
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 4/156 (2%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---GK 305
+ +EL+A +EK + E ++ ++EA+ L G F++LA+E
Sbjct: 144 TEEELKARFEKEVAAMPATEEVHARHILLKTKEEAEAVIAKLDGGADFVELAKESSTGPS 203
Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
LG FS + F++ + FG+ + V + + F
Sbjct: 204 GPEGGDLGFFSAGQMV-PEFEKVAFTMEPGTYTKEPVQTQFGWHVIKVEEKREAPKPEFD 262
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
VK + + K V++ L
Sbjct: 263 AVKDQVRQVVLREKYMGLVQKARDDLPVEYVDPAMK 298
Score = 38.3 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 32/116 (27%), Gaps = 12/116 (10%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+L + + V VG +++ + + ++
Sbjct: 35 LLAGALVFA-AFGTAAHAADEDVVARVGSEEITERDLKAAAAEVGEQFAR---------- 83
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ +L L+ L + E L+ D V +I + F+ +
Sbjct: 84 LPADQRKLAVLSALIDIKVLARQAEAEALQ-DDPEVAAQIDFLRERTLHNAYFARN 138
>gi|88608000|ref|YP_506608.1| hypothetical protein NSE_0732 [Neorickettsia sennetsu str.
Miyayama]
gi|88600169|gb|ABD45637.1| hypothetical protein NSE_0732 [Neorickettsia sennetsu str.
Miyayama]
Length = 307
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 44/144 (30%), Gaps = 18/144 (12%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ ++ VV + FL T VG + N ++ + M+ +K
Sbjct: 1 MFRVICVVFLLSFL-----SLPSYSIEVKTAAMVGDVIISNQDVRN-YQNFVVMLGEKSD 54
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
++ +L+ ++ Q+ + +GL + + G ++
Sbjct: 55 LSYSA-----------VLEQMIDLEVCYQYAKRVGLPFSDQKYDAALKHLRAL-GINHGA 102
Query: 133 SHDVFVSRLAREGINEKEYIDHYT 156
+F L ++ +
Sbjct: 103 HMALFEEYLKKQVFLSEVVDQIIR 126
>gi|294810228|ref|ZP_06768893.1| hypothetical protein CW3_4061 [Bacteroides xylanisolvens SD CC 1b]
gi|294442585|gb|EFG11387.1| hypothetical protein CW3_4061 [Bacteroides xylanisolvens SD CC 1b]
Length = 327
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 16/122 (13%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
FL + + + + V V +++ S + KQE+ I
Sbjct: 3 FFLFSFLFIACNTPVI--NKNDVVAEVNGEQILLSELASQSKQEIFDILNT--------- 51
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEAD---HGRVWGEIARSPLFHGKDNKFSHDV 136
+ + ++L L+ L+ + + + V +I K F+
Sbjct: 52 --AYEIKSRVLAGLIKQKLLEDAAKKENMSLEEFIDWFVQQKICVGQDSLKKRYGFNTQS 109
Query: 137 FV 138
F
Sbjct: 110 FY 111
>gi|39936127|ref|NP_948403.1| hypothetical protein RPA3064 [Rhodopseudomonas palustris CGA009]
gi|192291845|ref|YP_001992450.1| SurA domain [Rhodopseudomonas palustris TIE-1]
gi|39649981|emb|CAE28505.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
gi|192285594|gb|ACF01975.1| SurA domain [Rhodopseudomonas palustris TIE-1]
Length = 308
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
S VV V + + +++ + +++L++L+
Sbjct: 26 TQGQAQSVVVMVNGEPITNFDIDQ-----RSKLNRMSHKADS---------RQQVLEDLI 71
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
+ + G+ + + + S + LA +GI
Sbjct: 72 DEKVKIKEAKKYGVNPSDSDIDSSFSTMAS----RMRMSTAQMTNMLAAQGIRPDTLKSR 127
Query: 155 YTKMLSRTDVVG 166
+ +V
Sbjct: 128 IRAEMVWASLVR 139
>gi|326791007|ref|YP_004308828.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
lentocellum DSM 5427]
gi|326541771|gb|ADZ83630.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
lentocellum DSM 5427]
Length = 246
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 22/165 (13%), Positives = 57/165 (34%), Gaps = 10/165 (6%)
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-----VSSKANQLVLEYSKEGKN 516
Y ++ ES+ A D +++E + +K+ + A+ + + + V E K G +
Sbjct: 81 QYAMGKLLESVTASDEEVKEYYETHQGQFKSDEAAKANHILVATLEEAEKVAEEIKAGLS 140
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
F + K + + + + F+ + P++ Y + ++
Sbjct: 141 FAEAAKKYSTCPSASQGGALGEFTRGRMVPEFETAAFAMSPGEI-SAPVQTQFGYHIIEL 199
Query: 577 TNSKVGPVQEKDKFISYLTQM----MNKDLLDSVIAYLKSQYSVT 617
+ + + + + L + L+S Y+V
Sbjct: 200 EALTPAGLSPLEAVKEQVKEQCLLAKRQALYLAKRQELESLYTVE 244
>gi|227485002|ref|ZP_03915318.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
51172]
gi|227236999|gb|EEI87014.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC
51172]
Length = 302
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 5/176 (2%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE-----RARSVGLDKKILDNLVS 95
+++ V + + SF + L ++K G + L +LD+++
Sbjct: 32 NSIAIVDGKSIAKQSFDKELEFYLAFYTKKYGDSYLESKNAKGKTNKEILRDDLLDSMIK 91
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
+ + D +E D + G N ++ ++ ++ + D
Sbjct: 92 DQVMLNDLADKKIEIDDNTANKLRSDMEKELGDKNSLKANIKALNMSEADFSDVIFNDSI 151
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
KM + + + +V A N
Sbjct: 152 RKMHYEYFLTHNKIKDSEILQYYKANEELHKMYKYNVLVFDTKEACEEVKAKIKNQ 207
>gi|154684591|ref|YP_001419752.1| YacD [Bacillus amyloliquefaciens FZB42]
gi|154350442|gb|ABS72521.1| YacD [Bacillus amyloliquefaciens FZB42]
Length = 296
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 26/303 (8%), Positives = 86/303 (28%), Gaps = 39/303 (12%)
Query: 8 ASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
SRT + I +L + + L+ + + S ++ ++G + + ++ + + G
Sbjct: 2 KSRTLLTIIVAALLVCSVTVAYKLTKSQAAGSSEESIATIGDKHITRQDWMKKMEDQYG- 60
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE---IARSP 123
K L+++++ +++ E L + + E I
Sbjct: 61 --------------------KSTLEDMINAQVVEELAEKNKLTVSNSELDREFLLIKAVD 100
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+D+ + + ++ + E+ + +
Sbjct: 101 NSFYEDSHITEKEWRDQIRYNILLEELLTKDIDISDKEMQSFYNKNKELYHFDDSYRIRH 160
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF--------------EKYKDNYRAPEY 229
D ++ + + + + T + ++ E
Sbjct: 161 IVVKNKDEADRVLADLKGGSSFEAVAAERSTDRYTSQYGGDLGFVTENQENIPQAYITEA 220
Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
K++ + V + + +L+ + + Y + + Q+ +
Sbjct: 221 KKLKEDEWSVEPIKVSSGYAVIQLKEKLKSRTFSYNEVKSQIRRQIAMEQLGDKATVKTL 280
Query: 290 LKK 292
K+
Sbjct: 281 WKE 283
>gi|172064761|ref|YP_001812411.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria MC40-6]
gi|171998246|gb|ACB69162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria MC40-6]
Length = 282
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 31/109 (28%), Gaps = 18/109 (16%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSS---TVVSVGRQKVPFSSFINSWKQELGMISQKI 71
K F+ + I ++ A S +S V +V + + +
Sbjct: 7 KTFIAASALYLGIACVAQAQTPASSTSPVGVVATVNGTAITQAEVDTVLRASR------- 59
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + + + I + L++ + Q E V +
Sbjct: 60 -------QPDTPQVRQAIKNQLIARVLIQQAAEKANYG-SKPEVQTAMQ 100
>gi|320101858|ref|YP_004177449.1| hypothetical protein Isop_0305 [Isosphaera pallida ATCC 43644]
gi|319749140|gb|ADV60900.1| hypothetical protein Isop_0305 [Isosphaera pallida ATCC 43644]
Length = 449
Score = 47.2 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 38/400 (9%), Positives = 109/400 (27%), Gaps = 23/400 (5%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ S V + Q + +++ E G+ +IL+ L++
Sbjct: 73 NPSDPVAVINGQVITRQ-------------------MLSDECVARRGV--EILETLIARV 111
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+DQ I+ GL + EI ++ + GI+ ++Y
Sbjct: 112 LIDQAIQAQGLSVTAEEINAEIDSVAQRMAGLSR--EAWLKTLYKERGISPEQYARDIIY 169
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ + + P +L + + + R +V R I A +
Sbjct: 170 PTLALRKLAEPLVQITPKDLQIAFDATYGDKLRCRMIMVDKLRVAQEIWQELKANPGGFE 229
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + + + ++ + + E + A+ P + + +
Sbjct: 230 KIAMERSMDLNTRSLGGLIAEPISRHAAPETVSAAAFAQLVDGNPNDKDPSHKPKDGDIT 289
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
+ ++ ++ LK+ A++ L ++ + + +L K+
Sbjct: 290 GPIQVSETSWIILKREAVIPAQAKDPNDPAIAAQLEELVRDTKIKEKMGEVFNALMKRAQ 349
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
+ G + D A + +
Sbjct: 350 IENRLTGHIKMANEDPDPATGVDAAIRRASNNDQEQSAPPQTAPAPKTITPPPVADGPGA 409
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
+ ++ + + + + ++ + + P
Sbjct: 410 QSPKLKLPVPAGVTPEMIRERERLREQIRKEAQSVKPSNN 449
>gi|154502709|ref|ZP_02039769.1| hypothetical protein RUMGNA_00522 [Ruminococcus gnavus ATCC 29149]
gi|153796592|gb|EDN79012.1| hypothetical protein RUMGNA_00522 [Ruminococcus gnavus ATCC 29149]
Length = 246
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 16/151 (10%), Positives = 43/151 (28%), Gaps = 5/151 (3%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ E + + + + + K + ++ +F D K
Sbjct: 94 VTEEDVKNYYEEHKQQFTKGETVRAKHILTDSKEKCDAILAAIQSGETSFEDAAKEKSTC 153
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ + + F+ + + P++ Y + KV K V +
Sbjct: 154 PSGAKGGDLGEFGKGQMVKEFEDAAFTAEIGAI-VGPVQTQFGYHLIKVEEKKDAAVADF 212
Query: 588 DK----FISYLTQMMNKDLLDSVIAYLKSQY 614
++ + L Q + + L+ +Y
Sbjct: 213 EEVKNSIRNQLLQQRQNKVYSDKVKELREKY 243
>gi|160890576|ref|ZP_02071579.1| hypothetical protein BACUNI_03019 [Bacteroides uniformis ATCC 8492]
gi|317479882|ref|ZP_07938999.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_1_36]
gi|156859575|gb|EDO53006.1| hypothetical protein BACUNI_03019 [Bacteroides uniformis ATCC 8492]
gi|316903956|gb|EFV25793.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_1_36]
Length = 520
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 72/613 (11%), Positives = 153/613 (24%), Gaps = 99/613 (16%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+ +V LF F G S ++ + ++V S F S+
Sbjct: 2 VLMVRLFWVFFFLGFG-LAVSAQDDPVLMRINGKEVLRSEFERSYN-------------- 46
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ SVG +K LD V+ D L+ + V G + S +F + +++
Sbjct: 47 --KGGTSVGAGRKALDAYVNKFI------DFRLKIEAAEVAG-LDTSRVFQKEQDEYRRC 97
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
+ S L E E+E +Y KM S ++V + +D I
Sbjct: 98 LIKSYLTDEETAEQEARQYYDKMKSGRRAGRVYVKHIFKYLPQNISGHTLREMESRMDSI 157
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+A + Q+ ++ K + V ++ ++ E+
Sbjct: 158 YRALAKEGGAVPSFDACVEQFSDEKKAFWVGWLQ-------MPVEFEDIVFGLNAGEISR 210
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
+ + + + E L F K+ Q+ + G A
Sbjct: 211 PFLTPQGIHIVKVLEQQEILPFERMKDKIIRCQTRRHGMDKGTRA--------------- 255
Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
D + + K G + GS V+ + A
Sbjct: 256 ----FVDKLKKEYHYMPDKAGIDELLAKGSTSRVLFTLDGKAYGGKEFAGFAAVYPAGTR 311
Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
R +A + + + + + D
Sbjct: 312 RQLEAFTVKTILDYENSRLELKHPEFCALVQGHRDSMLLAEITDR--------------- 356
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ + +Y + R + T +
Sbjct: 357 ------------EVGKRSVVDEAGLKAYFEAHRSDFHWDEPRYKG-----IVLHCTTKRV 399
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVF 553
A++V Q+ + + + + + F + ++
Sbjct: 400 AKQVRKFLKQI---------PEEEWMDAIRLTFNAGDTPKVRAEQGLFAPGDNAYVDELV 450
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
S+ V K + L L +A L++
Sbjct: 451 FKGKNATPVL------SFPFTAVQGRKQKGPDSWQEVREPLVTAYRNYLETHWVAKLRAA 504
Query: 614 YSVTVHDNLIQRY 626
V + +++
Sbjct: 505 GKVEIDQEVLKTV 517
>gi|88658238|ref|YP_507033.1| SurA domain-containing protein [Ehrlichia chaffeensis str.
Arkansas]
gi|88599695|gb|ABD45164.1| surA domain protein [Ehrlichia chaffeensis str. Arkansas]
Length = 395
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 16/187 (8%), Positives = 49/187 (26%), Gaps = 15/187 (8%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
+++ + + + V V + +
Sbjct: 9 LVLFIILYSSNVFASVKIVAMVNDELISNLDLEKRIAINKFFYK-----------VEGNT 57
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
++ L+ L+ + Q + + + I + + + S + +
Sbjct: 58 AEEIALNALIDESIWRQEARKLKVTVTERDLLEAIKQFLVIKN----LGNIDLKSYVEAQ 113
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
G++ K ++ H L ++ + + + Q R +D V +
Sbjct: 114 GLDYKLFVQHMKSKLLWNKILMLKIAPYIIISDKEVQDSRDNMVGNGLDISVHIQEVMLP 173
Query: 205 IADPSNA 211
+ N
Sbjct: 174 ASMNDNE 180
>gi|213419168|ref|ZP_03352234.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 170
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ G + + L +IL+ L+ + Q + +G++ ++ IA K
Sbjct: 55 QAGQQLPDD----ATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIANI----AKQ 106
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
N + D SRLA +G+N Y + K + ++V V
Sbjct: 107 NNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRIT 151
>gi|315635080|ref|ZP_07890360.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
33393]
gi|315476201|gb|EFU66953.1| peptidyl-prolyl cis-trans isomerase [Aggregatibacter segnis ATCC
33393]
Length = 307
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 21/196 (10%), Positives = 61/196 (31%), Gaps = 5/196 (2%)
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
+++A ++ R + +S++ AL + K ++ EV +
Sbjct: 113 QQIAQQLMMSEVRNRAISQSVDVSREQVEALAKKMLAEAKAKGNVAKLTDTQYEVR-HIL 171
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + ++ Q+ + F D L+ +
Sbjct: 172 LKLNPLLNDAQAKAQLEQIRADILAGKTTFADAALKYSKDYLSGANGGSLGYAFPEMYVG 231
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLD 604
++ + V P + + + +VTN++ E + K + +D
Sbjct: 232 PFNKAVRTTKQGVISAPFKTEFGWHILEVTNTRQADRTEDAYRQKAYEQIVNQQLQDSAR 291
Query: 605 SVIAYLKSQYSVT-VH 619
+ L+ + ++ ++
Sbjct: 292 DWVQALRKRANIKYIN 307
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 50/153 (32%), Gaps = 28/153 (18%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
++ + + FL + + + V +V V S ++ ++
Sbjct: 6 VLFVALGFLAF----IANAQAEEKVVATVNGVPVLESQVKSALTKKSN------------ 49
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+ LD ++ + Q +++ G+ ++ +V I N +
Sbjct: 50 --------RQAALDKVIDDILVAQAVKESGVSVNNAQVDQIIEGIAA----QNGLTFGQL 97
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ L +GI+ Y + L ++V +
Sbjct: 98 LDALDYQGISYAAYRQQIAQQLMMSEVRNRAIS 130
>gi|301164816|emb|CBW24376.1| putative exported isomerase [Bacteroides fragilis 638R]
Length = 517
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 39/440 (8%), Positives = 105/440 (23%), Gaps = 45/440 (10%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ + Y S +K + +Y
Sbjct: 89 MENYYRALSRSYLTDSATDEAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREA 148
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
++ F L + + +G + + K G+
Sbjct: 149 QILMDSLYHVLETHPDIDFRTLVNKYSDDKKEFWMGWLQTSQEF-----EEVAFSLKDGE 203
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
++ G I V+ + F++++ ++ +++ ++K E + +
Sbjct: 204 YSKPFFTPKGIQIIKVTGRRE--IPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSTCQ 261
Query: 398 GTSMDEISRREKIVSIDLPL-VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
T + GK GK+ + + +
Sbjct: 262 YTPDKAGMEELLALGRTSRTLFTLDGKSFTGKDFERFADAHPMGIKRQLNAFVVKSILDY 321
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVK-KDWKTVKTAEEVSSKANQLVLEYSKEGK 515
++++ P L++ D+ ++ + S + L + +
Sbjct: 322 ENN-------RLEQKYPDFRLALQQRRDDLLLAAITRRESRQVSLSDSVALKAFFKEHRT 374
Query: 516 NFRDIGKNLGASL---LTTNQINRMDNENKFFGYD----GISQVFSGPVEMVKC----FP 564
++ ++ + K + I F+ P
Sbjct: 375 DYNWDSPRYRGAVLHGTHKKTLKSARKFLKKLPEEEWKDAIRLTFNTPASPATIRIEQGT 434
Query: 565 IENGLSYVVFK------------------VTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
G + V K V K + + I L + L
Sbjct: 435 FAEGDNVFVDKLVFKKGDFEPLKSYPFTVVLGEKKKGPESYHEIIPQLIRDYQNHLDALW 494
Query: 607 IAYLKSQYSVTVHDNLIQRY 626
L++ V ++ +++
Sbjct: 495 TERLRASAKVEINQEVLKTV 514
Score = 40.2 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 56/482 (11%), Positives = 121/482 (25%), Gaps = 34/482 (7%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI + L F ++ + Q + S F +
Sbjct: 3 KILVGTLTCLF-----GAIAGHAQQDPVLMRINGQDITRSEFERFCHRNK---------- 47
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGL-EADH--GRVWGEIARSPLFHGKDNK 131
S A L + D V + GL + + D+
Sbjct: 48 -PSGIAGKETLKRCA-DLFVDMKLKLSAAQKAGLDTVSDFRTEMENYYRALSRSYLTDSA 105
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + +L + + + R +R + +L+D +
Sbjct: 106 TD-EAYAKKLYDQMKTRSAAGEVKVMRIFRYLPQTALPHHLREAQILMDSLYHVLETHPD 164
Query: 192 VDYIVLNNRHVPAIADPSNAVLT--QWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
+D+ L N++ + L Q FE+ + + EY + + + +
Sbjct: 165 IDFRTLVNKYSDDKKEFWMGWLQTSQEFEEVAFSLKDGEYSKPFFTPKGIQIIKVTGRRE 224
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
+ + K E ++ N+ ++ + K G + LA +
Sbjct: 225 IPPFEQIRGELIHKLSRRPGTDKEIELWVNKLKSTCQYTPDKAGME-ELLALGRTSRTLF 283
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
G + AD+ K+ V+ Y + P F ++ Q+ +
Sbjct: 284 TLDGKSFTGKDFER-FADAHPMGIKRQLNAFVVKSILDYENNRLEQKYPDFRLALQQRRD 342
Query: 370 D---IANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
D A R ++ + + R V
Sbjct: 343 DLLLAAITRRESRQVSLSDSVALKAFFKEHRTDYNWDSPRYRGAVLHGTHKKTLKSARKF 402
Query: 427 GKEVA---AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM---WVQIKESIPARDRKLE 480
K++ + T A D ++ + + P +
Sbjct: 403 LKKLPEEEWKDAIRLTFNTPASPATIRIEQGTFAEGDNVFVDKLVFKKGDFEPLKSYPFT 462
Query: 481 EV 482
V
Sbjct: 463 VV 464
>gi|307298526|ref|ZP_07578329.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales
bacterium mesG1.Ag.4.2]
gi|306915691|gb|EFN46075.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales
bacterium mesG1.Ag.4.2]
Length = 733
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 47/142 (33%), Gaps = 27/142 (19%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVS---------VGRQK------- 50
K+ + + ++ V + W ++ L S + + VG
Sbjct: 14 KSVQRPIVWAVAILFGVGIVWWSVAQYLGGSSQGNEQGTGTEISFTETVGGLTKDGTPLS 73
Query: 51 -----VPFSSFINSWKQELGMISQKIGFVVNS-----ERARSVGLDKKILDNLVSGATLD 100
+ +S + S + L + + G+ ++ +G+ + +L+ TL
Sbjct: 74 NSDYWITYSEYETSVRDTLTNLRSQ-GYNLDPYFETENYPSEMGIRYDLFKSLIDQKTLL 132
Query: 101 QFIEDIGLEADHGRVWGEIARS 122
+ + G+ +V E R
Sbjct: 133 FYATENGVLPTAEQVDAETNRI 154
>gi|255264369|ref|ZP_05343711.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62]
gi|255106704|gb|EET49378.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62]
Length = 404
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 15/158 (9%), Positives = 43/158 (27%), Gaps = 19/158 (12%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+I L + + + + + V + + ++ +G +
Sbjct: 3 RILLGLALILTSLTTAPAMAQGLFS--PAIIVNDEVITRYELDQR--------AKLLGVL 52
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
L + + L+ + I + GL+ + ++
Sbjct: 53 RTP-----GNLSELAQEQLIEDRLKARLIRNAGLQLTGDGLQQALSD----FAGRANLDL 103
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
F L + G+ ++ D +S + + G
Sbjct: 104 ATFTQVLNQNGVEQETLRDLVATGVSWREYIRTRYGNR 141
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 16/200 (8%), Positives = 49/200 (24%), Gaps = 10/200 (5%)
Query: 422 GKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEE 481
++ G+ + + + + Q++
Sbjct: 209 SRENGGRLDWLPLSDLPPTVQPIILNLSPGEITPPLPIPNALALFQLRAIEETSVTPPTY 268
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
+ + +E +A +L + + K A + + R
Sbjct: 269 SAIEYAAYYMAGGRSESTLQQAARLRDRVDTC-DDLYGLAKGQPAEV-----LQRDTLPP 322
Query: 542 KFFGYDGISQVFSGPVEMVKCFPI-ENGLSYVVFKVTNSKV---GPVQEKDKFISYLTQM 597
D ++ + NG + V + G ++ L
Sbjct: 323 ADIPQDVAFELAKLDPGEISTVLTRSNGETLVFLMLCGRTPELGGAEVNREGVRDQLRSR 382
Query: 598 MNKDLLDSVIAYLKSQYSVT 617
D++++ L++ ++
Sbjct: 383 RLNGYADALLSELRADANIR 402
>gi|254520547|ref|ZP_05132603.1| ppic-type ppiase domain-containing protein [Clostridium sp.
7_2_43FAA]
gi|226914296|gb|EEH99497.1| ppic-type ppiase domain-containing protein [Clostridium sp.
7_2_43FAA]
Length = 248
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 23/236 (9%), Positives = 61/236 (25%), Gaps = 5/236 (2%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
++ K + + + + V L++ + +
Sbjct: 12 KEIKESDLQNMIMKYPADKRAYFETVEAKKQLLEQMVSFELINMLGKELNIQDTEEYKEN 71
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ T + + V + + + + + ++
Sbjct: 72 VRQAENDILTQLTLNKLLLEVTVTDEDALNYYNNNKGEFTQQPTVSAKHILVDSKELCDK 131
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+ E + F + N + + F + V P+
Sbjct: 132 IKSEIDSKELTFEEAAMKYSTCPSKEEGGNLGAFGRGMMVPEFEDEAFKLDIN-VVSEPV 190
Query: 566 ENGLSYVVFKVTNSKV----GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ Y + KV + + K + ++ L Q M + V+ L+ +Y VT
Sbjct: 191 KTQFGYHLIKVEDKNEGREMPFEEIKAQIVNKLLQEMQQRKYLDVVKELEKKYGVT 246
>gi|312126469|ref|YP_003991343.1| hypothetical protein Calhy_0216 [Caldicellulosiruptor
hydrothermalis 108]
gi|311776488|gb|ADQ05974.1| conserved hypothetical protein [Caldicellulosiruptor hydrothermalis
108]
Length = 229
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 34/116 (29%), Gaps = 16/116 (13%)
Query: 15 KIFLVV----LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS-- 68
KI + + + + + G S A V K+ ++ E
Sbjct: 5 KILIGICSLAVLIGIVAAGWSLASKKELPKDVAAVVNGHKIYKKDLDMAYGLEELRYENA 64
Query: 69 ----QKIGFVVNSERARSVG------LDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+++ + A+ + ++ILD ++ L + G E
Sbjct: 65 KASFEELKNKYGDDVAKKLEGSLRKKTKQEILDEMIERLVLYDEAKKEGCEVSVDE 120
>gi|260219454|emb|CBA26299.1| Probable parvulin-type peptidyl-prolyl cis-trans isomerase
[Curvibacter putative symbiont of Hydra magnipapillata]
Length = 239
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 46/131 (35%), Gaps = 2/131 (1%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGY 546
K+++ E +A L+ + K+G F D+ K + +D +
Sbjct: 110 KEYRARHILVEKEDQAKALIAQL-KKGAKFEDLAKKNSKDPGSGANGGDLDWANASSYVK 168
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ + + P++ + + ++ + + + + + + Q + + L
Sbjct: 169 EFSDALTGLSKGKMTDAPVKTQFGFHIIRLEDVREAQLPKYEDVKPQIAQQLQQQKLAKF 228
Query: 607 IAYLKSQYSVT 617
L+++ V
Sbjct: 229 QEDLRAKAKVE 239
>gi|149194720|ref|ZP_01871815.1| possible periplasmic protein [Caminibacter mediatlanticus TB-2]
gi|149135143|gb|EDM23624.1| possible periplasmic protein [Caminibacter mediatlanticus TB-2]
Length = 271
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 27/292 (9%), Positives = 80/292 (27%), Gaps = 34/292 (11%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K L+++F+ F+ + D V V + + ++K
Sbjct: 3 KFILILIFLNFVNAKIVD--------RVVAVVNGEPITSYDITKTFKSL----------N 44
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
++ ++ L+ L+ ++ I+ G+E D + I + + F
Sbjct: 45 ISP---------REALNILIDQKIIENEIKRRGIEVDDFDIENAIEKI-AKQNGMSVFEF 94
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
++ +E ++ + K + + + V + + + + +
Sbjct: 95 KNYL----KERGEYNNFLKNLKKDIQKQKLFAQIVNSKLKVSNKELKNFYDQNKEKFTTF 150
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
+ + + + ++ R+ + +
Sbjct: 151 KQIEVIEYISQNP--DELKHIKKNPLYNSSNIKIENRVFKYNQIPLNLMFLFNSTKEGEF 208
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
N Y I E V ++ + +K + +E +
Sbjct: 209 TPIINNGNSYVMFYINKKEGKVILPFEQIKNIIANQLMQQKRNAILKEYFNT 260
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 6/157 (3%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+Q ++ +V K++ + + K +++ S+ + I KN
Sbjct: 115 IQKQKLFAQIVNSKLKVSNKELKNFYDQNKEKFTTFKQIEVIEYISQNPDELKHIKKNPL 174
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN----SKV 581
+ NR+ N+ + +F+ E I NG SYV+F + +
Sbjct: 175 YNSSNIKIENRVFKYNQI--PLNLMFLFNSTKEGEFTPIINNGNSYVMFYINKKEGKVIL 232
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
Q K+ + L Q +L LK+Q + +
Sbjct: 233 PFEQIKNIIANQLMQQKRNAILKEYFNTLKNQADIEI 269
>gi|322417708|ref|YP_004196931.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
gi|320124095|gb|ADW11655.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M18]
Length = 308
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 17/161 (10%), Positives = 49/161 (30%), Gaps = 6/161 (3%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ ++ + + + ++A ++ + K G +F ++ K
Sbjct: 129 VSDAELQDYYNKNKDKFKSDAQIRASHILVKSEAEAQEI-QKQLKAGASFEELAKKHSMD 187
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP---- 583
+ + S F ++ Y + K T +
Sbjct: 188 GAAQKGGDLGWFSKGSMIPEFESVAFGLKEGET-SGIVKTQFGYHIIKQTGKRPAGVRSF 246
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ KD+ + L ++ + LK + V+V ++ ++
Sbjct: 247 EEVKDQIKAALLPTKQQETFKKLKDDLKKEAKVSVKEDALK 287
Score = 44.1 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 9/112 (8%), Positives = 31/112 (27%), Gaps = 16/112 (14%)
Query: 18 LVVLFVPFLIWGLSDALF------SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
++++ + + G + V + + F +
Sbjct: 9 VLLIALCVAVTGCKQQASTEAKKEGPGKGIVLAEVNGTTITDNDFYKE--------QAAL 60
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ + K+++D +V + Q + G++ V ++
Sbjct: 61 PPQLKP-MTETPEGKKEMIDTMVVRELIMQQAQKDGIDKSP-EVAAKLEDLK 110
>gi|304394142|ref|ZP_07376065.1| peptidylprolyl isomerase PrsA1 [Ahrensia sp. R2A130]
gi|303293582|gb|EFL87959.1| peptidylprolyl isomerase PrsA1 [Ahrensia sp. R2A130]
Length = 277
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 20/231 (8%), Positives = 54/231 (23%), Gaps = 17/231 (7%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
S V VG +++ S + +Q + LD L+
Sbjct: 24 SAQEDKIVAKVGSEEITQSELDQAMADMAQQFAQ----------FPEPQRKARALDALID 73
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
G++ D + + + H+ + ++ + GI +++ Y
Sbjct: 74 IEVFAALARKEGIDKDPKLLAR-------MELLNKRALHNGYFTQKVQAGITDEQLQARY 126
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
K + + D++ L + P L
Sbjct: 127 DKEIGSAPRQKEVKARHILVKTEEEAKAIIEELKSGADFVELAKTKSTGPSGPQGGDLGF 186
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
+ + + + + ++ + +
Sbjct: 187 FKKGQMVPEFEKAAFELEAGKVTETPVKTQFGFHIIKVDETRDTPLPTFEQ 237
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 4/128 (3%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---GK 305
++++LQA Y+K + ++ ++EA + LK G F++LA+ +
Sbjct: 118 TDEQLQARYDKEIGSAPRQKEVKARHILVKTEEEAKAIIEELKSGADFVELAKTKSTGPS 177
Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
LG F K + + F L + FG+ I V + + +F+
Sbjct: 178 GPQGGDLGFFKKGQMV-PEFEKAAFELEAGKVTETPVKTQFGFHIIKVDETRDTPLPTFE 236
Query: 366 EVKKDIAN 373
+ K+ +
Sbjct: 237 QSKEQLRQ 244
>gi|52079482|ref|YP_078273.1| molecular chaperone PrsA [Bacillus licheniformis ATCC 14580]
gi|52784844|ref|YP_090673.1| hypothetical protein BLi01072 [Bacillus licheniformis ATCC 14580]
gi|319646731|ref|ZP_08000960.1| PrsA protein [Bacillus sp. BT1B_CT2]
gi|52002693|gb|AAU22635.1| molecular chaperone PrsA [Bacillus licheniformis ATCC 14580]
gi|52347346|gb|AAU39980.1| PrsA [Bacillus licheniformis ATCC 14580]
gi|317391319|gb|EFV72117.1| PrsA protein [Bacillus sp. BT1B_CT2]
Length = 286
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 54/180 (30%), Gaps = 31/180 (17%)
Query: 482 VLTDVKKDWKTVKTAE---------------------------EVSSKANQLVLEYSKEG 514
V +K + K A+ K + V + K+G
Sbjct: 101 VKEQIKYELLMQKAAKDNIKVTDDDVKEYYDGLKGKIHLSHILVKEKKTAEEVEKKLKKG 160
Query: 515 KNFRDIGKNLGASLLTTNQINRM-DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
+ F D+ K + ++ D + F+ + P+++ Y +
Sbjct: 161 EKFEDLAKEYSTDGTAEKGGDLGWVGKDDNMDKDFVKAAFALKTGEI-SGPVKSQFGYHI 219
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
K + K + + + D L SVI L + V D +++ +D +
Sbjct: 220 IKKDEERGKYEDMKKELKKEVQEQKQNDQTELQSVIDKLVKDADLKVKDKELKKQVDQRQ 279
>gi|328956331|ref|YP_004373664.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coriobacterium
glomerans PW2]
gi|328456655|gb|AEB07849.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Coriobacterium
glomerans PW2]
Length = 404
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 29/300 (9%), Positives = 87/300 (29%), Gaps = 15/300 (5%)
Query: 332 LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL 391
K+ T I + + V + +++ + A + + ED ++
Sbjct: 85 NIKEDSITEQIMQTKEGGKYDTDEKWAKYLVDSNQTPEELRKTKIKSLAKQYLIEDAEKK 144
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
+ +++ + + K + E + L + K++
Sbjct: 145 HDITVSDDELNDDWKDQVKKYDSEQAFIDQIKKMGMTEASYKSSIRNSLMQKKLKEEVAP 204
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
+ Y+ I + AR + ++ +V KA ++ + +
Sbjct: 205 EKDPSDQDIIDYVNKDISKYNDARRSSNILFK---IESGADEQSDAKVKEKAQGVLDKIN 261
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
F D + + + ++ F + + + + V +++
Sbjct: 262 SGELTFEDAAEKYSEDDGSKKDKGDVGWDKLTTFVKEYQDALNNLAADQVSGL-VKSTYG 320
Query: 571 YVVFK----------VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
Y + + V + P K+K + + + + L + + ++D
Sbjct: 321 YHIIRCTGYFHVDGTVNSIDQIPKNMKEKISDTIKKDSSSKAYTAWEDDLVDKADIKIND 380
Score = 40.6 bits (92), Expect = 0.75, Method: Composition-based stats.
Identities = 17/174 (9%), Positives = 43/174 (24%), Gaps = 20/174 (11%)
Query: 6 RKASRTWVAKIFLVVLFVPFLI-------WGLSDALFSVSG----SSTVVSVGRQKVPFS 54
R+ V + + + L+ G+ + + +V +
Sbjct: 30 REKVGRIVKIVLVAIGVFAMLLSVTTMACAGIMNQAKTKKSYELTGGVAATVNGVNIKED 89
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEA 110
S Q S L K + +L ++ + +
Sbjct: 90 SITEQIMQTKEGGKYDTDEKWAKYLVDSNQTPEELRKTKIKSLAKQYLIEDAEKKHDITV 149
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+ + + S F+ ++ + G+ E Y L + +
Sbjct: 150 SDDELNDDWKDQVKKYD-----SEQAFIDQIKKMGMTEASYKSSIRNSLMQKKL 198
>gi|68171990|ref|ZP_00545291.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Sapulpa]
gi|67998586|gb|EAM85338.1| conserved hypothetical protein [Ehrlichia chaffeensis str. Sapulpa]
Length = 395
Score = 47.2 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 16/187 (8%), Positives = 49/187 (26%), Gaps = 15/187 (8%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
+++ + + + V V + +
Sbjct: 9 LVLFIILYSSNVFASVKIVAMVNDELISNLDLEKRIAINKFFYK-----------VEGNT 57
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
++ L+ L+ + Q + + + I + + + S + +
Sbjct: 58 AEEIALNALIDESIWRQEARKLKVTVTERDLLEAIKQFLVIKN----LGNIDLKSYVEAQ 113
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
G++ K ++ H L ++ + + + Q R +D V +
Sbjct: 114 GLDYKLFVQHMKSKLLWNKILMLKIAPYIIISDKEVQDSRDNMVGNGLDISVHIQEVMLP 173
Query: 205 IADPSNA 211
+ N
Sbjct: 174 ASMNDNE 180
>gi|325279465|ref|YP_004252007.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter
splanchnicus DSM 20712]
gi|324311274|gb|ADY31827.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Odoribacter
splanchnicus DSM 20712]
Length = 445
Score = 47.2 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 17/163 (10%), Positives = 46/163 (28%), Gaps = 10/163 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V VG + + S N++ + Q+ +++S S +IL+ + L
Sbjct: 25 DKIVAIVGDEIILQSDIENAF------LQQQGQGIISS----SPDYKAEILEQQLVQKLL 74
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ + V ++ F + + + + + + L
Sbjct: 75 MAQAQIDSIIVSDEEVENAVSSQIEFFISNIGSQERLEKYFGKSIQEIKDDMRNPLKEQL 134
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
+ V +R + + + ++ D
Sbjct: 135 ITEQMQQKIVEKIRITPSEVRSYFKKIPKDSLPDMPDRYELQQ 177
>gi|164688004|ref|ZP_02212032.1| hypothetical protein CLOBAR_01649 [Clostridium bartlettii DSM
16795]
gi|164602417|gb|EDQ95882.1| hypothetical protein CLOBAR_01649 [Clostridium bartlettii DSM
16795]
Length = 302
Score = 47.2 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 10/160 (6%), Positives = 46/160 (28%), Gaps = 8/160 (5%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINS---WKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
+S VG + + + ++++ +
Sbjct: 3 GCSNSNAFKVGETEFSNEEVDKVKSILTATQSYTDADYLAQFKESKDNDDKIKQEVISYM 62
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
+ + Q + ++ V + ++ + + L G++E +
Sbjct: 63 IDNEVVYQQAQKEKIKVTDDEVNQKYSQIEKMLDTN-----QEYKKLLDDAGVDEDYLKE 117
Query: 154 HYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
K L+ + ++ ++ +++ + + ++ +
Sbjct: 118 TIKKDLAVQKYRENYEQDLKVTDKEVEKYYKEHKDDFKEE 157
>gi|227485003|ref|ZP_03915319.1| possible peptidylprolyl isomerase PrsA [Anaerococcus lactolyticus
ATCC 51172]
gi|227237000|gb|EEI87015.1| possible peptidylprolyl isomerase PrsA [Anaerococcus lactolyticus
ATCC 51172]
Length = 343
Score = 47.2 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 21/194 (10%), Positives = 50/194 (25%), Gaps = 32/194 (16%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSS---------------TVVSVGRQKVPFSSFINS 59
K+ + +L ++ + S T+ V +K+ ++
Sbjct: 4 KLLIAMLASTMVLGACGNQANDNKKDSKMEEKASDIKELDKGTIAIVNGEKISKDAYKAE 63
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
M+ A L I+ +V + ++ +E V
Sbjct: 64 MSFYGSML------------ASRQNLKNSIVQMMVQDKLIADDMKANKIEISDKEVNDAF 111
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
S G +F L ++ +++ + K L F + +
Sbjct: 112 LNSVKQFGGQEQFDK-----MLDDYNMDVEKFKETVKKDLMYKKHREWFEKEHPVTEEEI 166
Query: 180 DQAKRFYFENRSVD 193
Q + +
Sbjct: 167 KQYYEDNKDKFAKR 180
>gi|261380078|ref|ZP_05984651.1| conserved hypothetical protein [Neisseria subflava NJ9703]
gi|284797294|gb|EFC52641.1| conserved hypothetical protein [Neisseria subflava NJ9703]
Length = 290
Score = 47.2 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 18/174 (10%)
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE------VSSKANQLVLEYSKEG 514
G I P +++ ++ D +K + + SS A + + + +
Sbjct: 121 GQAFAAHIVRQNPIQEKDVKAAYNDFSNFYKGTQEVQLGEIVTDSSSNAQKAIADLDAKK 180
Query: 515 K--------NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ + K G + + + V P++
Sbjct: 181 SFVSVLNQYSIDEAAKKAGGIPKAYVPLKDLQESA----PPLYAAVKDLKKGAHTKTPLQ 236
Query: 567 NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
NG Y VF V + + V + + + + +D+ I L + S+ V+
Sbjct: 237 NGNLYAVFYVNDRRNVTVPSYEASKNEIGNDLQAARVDAAIQSLLKKASIKVNK 290
>gi|159185780|ref|NP_357092.2| peptidyl-prolyl cis-trans isomerase [Agrobacterium tumefaciens str.
C58]
gi|159140914|gb|AAK89877.2| peptidyl-prolyl cis-trans isomerase [Agrobacterium tumefaciens str.
C58]
Length = 288
Score = 47.2 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 71/187 (37%), Gaps = 4/187 (2%)
Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
E+ + + K ++NDE++A Y+K E ++ ++ EA +
Sbjct: 94 RMEFIKDRELHNAYFRKHVVDAVTNDEVKARYDKEVAALPQEEEIKAAHILVASEDEAKD 153
Query: 286 AFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ L GK F LA+E+ + LG F K + ++ F L K +
Sbjct: 154 IIKQLDSGKDFAALAKEKSTDSNKDDGGDLGWFGKGRMV-PEFEEAAFGLEKGAYTKTPV 212
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
FG+ + + + + + +F++V+ + + K +++ + + T
Sbjct: 213 KTQFGFHVIKLEDKRIAPPPAFEQVEPQVRQLVMRDKYVALIEKAKADQKIEIMDETLKK 272
Query: 403 EISRREK 409
+ K
Sbjct: 273 GYDQATK 279
>gi|284033573|ref|YP_003383504.1| hypothetical protein Kfla_5700 [Kribbella flavida DSM 17836]
gi|283812866|gb|ADB34705.1| hypothetical protein Kfla_5700 [Kribbella flavida DSM 17836]
Length = 208
Score = 46.8 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 11/96 (11%), Positives = 25/96 (26%), Gaps = 13/96 (13%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
+ VG+ ++ ++ + + Q V L LV+
Sbjct: 25 GTHPGAAAVVGKTEITVGDVDDTSRSVTSALGQPFAASV-------------ALSELVNS 71
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
A + Q + + + + KF
Sbjct: 72 ALVQQIADQRAITVSEAEIAPAMKAVVGDQAVYEKF 107
>gi|312961518|ref|ZP_07776019.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
[Pseudomonas fluorescens WH6]
gi|311284197|gb|EFQ62777.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
[Pseudomonas fluorescens WH6]
Length = 301
Score = 46.8 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 37/128 (28%), Gaps = 5/128 (3%)
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ + S+A L+L ++ F ++ A + + Q+F
Sbjct: 162 EARDLAHSQAEVLLLSLEEQPGQFAELALKYSACPSKAQGGSLGQVSKGQTVPELERQLF 221
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAY 609
+ + P+E+ + V V G + + + + + +
Sbjct: 222 TLAPG-LAGKPLESRYGWHVISVDQRIEGQPLPYEAVAVAIRTQLQQGVWQKALVQYLQT 280
Query: 610 LKSQYSVT 617
L +
Sbjct: 281 LIGAADIR 288
>gi|168700601|ref|ZP_02732878.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gemmata
obscuriglobus UQM 2246]
Length = 367
Score = 46.8 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 23/184 (12%), Positives = 50/184 (27%), Gaps = 18/184 (9%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + +P + + +Q K+I+ +L+ A +
Sbjct: 67 TGNAAVVNGKPIPEVAVYRALRQFPEQHRDMA--------------RKEIMAHLIENALI 112
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
D+++ + D V IA + K + L + E E+ T +
Sbjct: 113 DEYLTALKTTVDEKDVEKLIADLKKELTEAKK----DYAKELEAMMLTEAEFRSEVTAQM 168
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
V L F +I++ A ++ L +
Sbjct: 169 KWEKFVQQQGTDAALKQLFESSPDVFDGTMVRARHILMTPGTDEAKRKDADQKLRGIKQA 228
Query: 220 YKDN 223
+
Sbjct: 229 VEQE 232
>gi|307300974|ref|ZP_07580743.1| SurA domain protein [Sinorhizobium meliloti BL225C]
gi|307317709|ref|ZP_07597147.1| SurA domain protein [Sinorhizobium meliloti AK83]
gi|306896471|gb|EFN27219.1| SurA domain protein [Sinorhizobium meliloti AK83]
gi|306903929|gb|EFN34515.1| SurA domain protein [Sinorhizobium meliloti BL225C]
Length = 315
Score = 46.8 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 33/287 (11%), Positives = 66/287 (22%), Gaps = 19/287 (6%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
L + + + + + + +STV V V + + ++ G
Sbjct: 11 LLSAVALAGALSVAAGTVTTAMAASTVEVVVNSTVITSGDVAKRVAFLK--LQRQSGGAA 68
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ LV I + V AR NK S +
Sbjct: 69 ------------EAKQQLVDEVLKRAEIARVQQSVSTDEVDAAFARFAA----GNKLSPE 112
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
L + G+ + + +S VV G + +
Sbjct: 113 QLGKILDQAGVGVDHFKQYIAVQMSWPRVVNFRYGSASRLSGGDLVKRMMQGGGNKPVTT 172
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+ V + S + + N ++ S + A
Sbjct: 173 EYFLQQVIFVIPESKRGAITAKRQAEANASRSQFPGCDTSKAFAANYRDVSIRSLGRILA 232
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
+ K + ++ E KK + A E
Sbjct: 233 QQLPEDWKPLVEKAGDGMTTGTRVTEKGVEYLAICKKRQVNDDAAAE 279
>gi|158521717|ref|YP_001529587.1| SurA domain-containing protein [Desulfococcus oleovorans Hxd3]
gi|158510543|gb|ABW67510.1| SurA domain [Desulfococcus oleovorans Hxd3]
Length = 232
Score = 46.8 bits (108), Expect = 0.010, Method: Composition-based stats.
Identities = 21/206 (10%), Positives = 50/206 (24%), Gaps = 10/206 (4%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
+G D+ S ++ + V + F N+ + F +
Sbjct: 32 FGGCDSTGKTQRQSFLLRIDEMVVTRTDFYNALEIAKTAY----PFEALQNPEVMAKVKA 87
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++L L L + +D+G+ + +A + VF L I
Sbjct: 88 RLLKQLTEELILARRAQDLGIAVSDAELEKAVAHI------TEDYPEGVFEQTLLENAIP 141
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ + V+ + A + +
Sbjct: 142 FDVWKARLKAGMLMEKVIERELMEKMVITPEEASAYYREHHQEEQEAEGDVALLKRLRRE 201
Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRIS 233
+ W + + Y + +
Sbjct: 202 KAQKAYVDWMKALQQQYHIELNQDLW 227
>gi|290769658|gb|ADD61438.1| putative protein [uncultured organism]
Length = 520
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 72/613 (11%), Positives = 153/613 (24%), Gaps = 99/613 (16%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+ +V LF F G S ++ + ++V S F S+
Sbjct: 2 VLMVRLFWVFFFLGFG-LAVSAQDDPVLMRINGKEVLRSEFERSYN-------------- 46
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ SVG +K LD V+ D L+ + V G + S +F + +++
Sbjct: 47 --KGGTSVGAGRKALDAYVNKFI------DFRLKIEAAEVVG-LDTSRVFQKEQDEYRRC 97
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
+ S L E E+E +Y KM S ++V + +D I
Sbjct: 98 LIKSYLTDEETAEQEARQYYDKMKSGRRAGRVYVKHIFKYLPQNISGHTLREMESRMDSI 157
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+A + Q+ ++ K + V ++ ++ E+
Sbjct: 158 YRALAKEGGAVPSFDACVEQFSDEKKAFWVGWLQ-------MPVEFEDIVFGLNAGEISR 210
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
+ + + + E L F K+ Q+ + G A
Sbjct: 211 PFLTPQGIHIVKVLEQQEILPFERMKDKIIRCQTRRHGMDKGTRA--------------- 255
Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
D + + K G + GS V+ + A
Sbjct: 256 ----FVDKLKKEYHYMPDKAGIDELLAKGSTSRVLFTLDGKAYGGKEFAGFAAVYPAGTR 311
Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
R +A + + + + + D
Sbjct: 312 RQLEAFTVKTILDYENSRLELKHPEFCALVQGYRDSMLLAEITDR--------------- 356
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ + +Y + R + T +
Sbjct: 357 ------------EVGKRSVVDEAGLKAYFEAHRSDFHWDEPRYKG-----IVLHCTTKRV 399
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG--YDGISQVF 553
A++V Q+ + + + + + F + ++
Sbjct: 400 AKQVRKFLKQI---------PEEEWMDAIRLTFNAGDTPKVRAEQGLFAPGDNAYVDELV 450
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
S+ V K + L L +A L++
Sbjct: 451 FKGKNATPVL------SFPFTAVQGRKQKGPDSWQEVREPLVTAYRNYLETHWVAKLRAA 504
Query: 614 YSVTVHDNLIQRY 626
V + +++
Sbjct: 505 GKVEIDQEVLKTV 517
>gi|226355966|ref|YP_002785706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Deinococcus deserti
VCD115]
gi|226317956|gb|ACO45952.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor
[Deinococcus deserti VCD115]
Length = 338
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 35/99 (35%), Gaps = 2/99 (2%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNL 93
+ S+ V +G++ + + F +++Q + + G + L
Sbjct: 41 SAAQDSAVVGRIGQEVITLAEFNRAFRQAVARVLNSQGVPFEESYMAEFNDARGEFLKQY 100
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ + Q ++AD + ++A + D +F
Sbjct: 101 LRDRAVYQLA-RGSVKADAAEIDKQVADARADFESDAEF 138
>gi|255595692|ref|XP_002536368.1| conserved hypothetical protein [Ricinus communis]
gi|223519931|gb|EEF26015.1| conserved hypothetical protein [Ricinus communis]
Length = 155
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 30/105 (28%), Gaps = 16/105 (15%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ V ++ G + + + V + + +++G
Sbjct: 7 IIVVALILGGCNKSQNVEDAQ-VLARVNGNDITIQQLHAELPNASLTLDKQVG------- 58
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
++IL L+ L Q + L+ V + S
Sbjct: 59 -------QQILSRLIERQLLMQEAVKLNLDRTP-EVMQALETSKA 95
>gi|83719320|ref|YP_442657.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Burkholderia thailandensis E264]
gi|167581594|ref|ZP_02374468.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
thailandensis TXDOH]
gi|167619710|ref|ZP_02388341.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
thailandensis Bt4]
gi|257138870|ref|ZP_05587132.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Burkholderia thailandensis E264]
gi|83653145|gb|ABC37208.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
thailandensis E264]
Length = 259
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 10/180 (5%)
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-------- 498
+ P K V + + I++ + E+ K E
Sbjct: 81 NRPDVKAQIVVAQQTAVLRALIEDFLKKNQPSDTELKARYDDLVKNAGGREYHLHHILVD 140
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPV 557
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 141 NEQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQHLQK 199
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + ++ + Q M + L + L+ Q +
Sbjct: 200 GQMTDTPVKTQFGWHIIRVDDIRNITPPPFEQVKQQIAQQMVQQKLQAFEEGLRQQAKIQ 259
Score = 38.3 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + Q + L++ + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADAMIAQLVQQGQQ-----------DTPQLEQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIKRGI 79
Score = 37.5 bits (84), Expect = 6.7, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 4/148 (2%)
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
+ S+ EL+A Y+ + E ++ N+++A + +K G KF LA++ K
Sbjct: 109 NQPSDTELKARYDDLVKNAGGREYHLH-HILVDNEQQAKDLIAKIKGGAKFEDLAKQYSK 167
Query: 306 SLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTV 362
G P A + L K + FG+ I V +I+
Sbjct: 168 DPGSAKNGGDLDWSDPKAYVPEFAAAAQHLQKGQMTDTPVKTQFGWHIIRVDDIRNITPP 227
Query: 363 SFQEVKKDIANQMRITKASEKVKEDYKR 390
F++VK+ IA QM K + ++
Sbjct: 228 PFEQVKQQIAQQMVQQKLQAFEEGLRQQ 255
>gi|228958588|ref|ZP_04120307.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228801099|gb|EEM47997.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar pakistani
str. T13001]
Length = 293
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + K + Q +
Sbjct: 133 TDKDVKNNYKPEMKVSHILVKDEKTAKEIKEK-VNNGEDFAALAKQYSEDTGSKEQGGEI 191
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KDK +
Sbjct: 192 SGFAPGQTVKEFEEAAYKLDAGQV-SDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDI 250
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 281
>gi|196232956|ref|ZP_03131805.1| SurA domain protein [Chthoniobacter flavus Ellin428]
gi|196222934|gb|EDY17455.1| SurA domain protein [Chthoniobacter flavus Ellin428]
Length = 229
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
TV +V ++ ++ L + + +E+ + + +LD ++ L
Sbjct: 48 DTVATVDGAEIKKDELEKAFANLLAA-RKMSPDAIPAEQ--RLQGYRMVLDEIIIDKILA 104
Query: 101 QFIEDIGLEADHGRVWGEIARSP 123
+ D + V + R
Sbjct: 105 KKSADT--KVTDEEVNAQWERIK 125
>gi|325576844|ref|ZP_08147459.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
ATCC 33392]
gi|325161050|gb|EGC73168.1| peptidyl-prolyl cis-trans isomerase [Haemophilus parainfluenzae
ATCC 33392]
Length = 310
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 24/149 (16%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
+ F + GL + + V +V + S
Sbjct: 9 LLFAMIGLFTFSQAQAEERVVATVNGTPILQSQVNAVMG--------------------K 48
Query: 83 VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
G + LD ++ ++ I++ G++ + V + N ++ F+ L
Sbjct: 49 KGSQRAALDKIIDDMLTEKAIKESGVKVNQAEVNRIVEDIAA----KNGLTYGQFLDALD 104
Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGG 171
+GI+ + ++ + V +
Sbjct: 105 YQGISLNAFKQQISRQMLMAGVRNHAIQN 133
Score = 41.0 bits (93), Expect = 0.61, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 36/123 (29%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ ++ ++ E F D L+ + +++
Sbjct: 184 QAKAELERIRSEIILGKMTFADAALKYSKDYLSGANGGSLGYAFPEAYVGPFAKMVETTP 243
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ P ++ + + +VT S+ G E + K + ++ + L+
Sbjct: 244 QGTVSAPFKSEFGWHILEVTGSRDGDKTEDAYRQKAYEQIVNSQLQEATKDWVKALRKNA 303
Query: 615 SVT 617
+
Sbjct: 304 DIQ 306
>gi|308271060|emb|CBX27670.1| hypothetical protein N47_H24920 [uncultured Desulfobacterium sp.]
Length = 185
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 12/144 (8%), Positives = 38/144 (26%), Gaps = 3/144 (2%)
Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
+ V + F + + + + KK+L+ ++ L Q
Sbjct: 14 IAVVNGVGIKKEDFTRELFAFEEQYANRGEK---PDEKALSDMKKKVLEKMIETELLYQE 70
Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
G + + V + + ++F+ ++ +L + + +
Sbjct: 71 SVKNGFKVEDSTVDEQFNKFKGQFKNADEFNKELARVKLTEASLKNQIRQVMTIQQYINK 130
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFY 186
+ V + +
Sbjct: 131 EFVEKIKISDEEIKKFYETNLKDK 154
>gi|73667407|ref|YP_303423.1| hypothetical protein Ecaj_0794 [Ehrlichia canis str. Jake]
gi|72394548|gb|AAZ68825.1| ATP synthase F1 subcomplex epsilon subunit [Ehrlichia canis str.
Jake]
Length = 399
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 16/153 (10%), Positives = 41/153 (26%), Gaps = 22/153 (14%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L++ + F +D V V +
Sbjct: 12 LLILCVMLFSSTVFADV-------KIVAMVNDDLISNLDLEKRVAINKFFYK-------- 56
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+ LD L+ + Q + + + + + + + +
Sbjct: 57 ---VDGSTAAEIALDALIDESIWRQEAKKLKITVTERDILEAVKQFLVMKN----LGNID 109
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
F S + +G++ K ++ H L ++ + V
Sbjct: 110 FKSYVETQGLDYKMFMQHMKSKLLWNKILMLKV 142
>gi|125972872|ref|YP_001036782.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum ATCC 27405]
gi|256005741|ref|ZP_05430696.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum DSM 2360]
gi|281417071|ref|ZP_06248091.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum JW20]
gi|125713097|gb|ABN51589.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum ATCC 27405]
gi|255990314|gb|EEU00441.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum DSM 2360]
gi|281408473|gb|EFB38731.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum JW20]
gi|316940891|gb|ADU74925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum DSM 1313]
Length = 463
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 41/154 (26%), Gaps = 4/154 (2%)
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ E + ++V + EE A+++ K ++F + K
Sbjct: 176 ELDEGYEKHKIQNKKVDIRHIFISSQERGKEEAKKLADEIYNRL-KNNEDFETLAKQYSD 234
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPV 584
T + F PIE Y + V
Sbjct: 235 DEKTKESGGVITELRAGFNEAVFDNAVFTAEAGQLLEPIEVARGYEIVYVDKVTDFYRTR 294
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
E + ++ + + M D K Y + +
Sbjct: 295 DEYAELLT-VDKFMQSDAYKEWFEEYKKNYDIEI 327
Score = 37.1 bits (83), Expect = 9.6, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 35/115 (30%), Gaps = 12/115 (10%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSST------VVSVGRQKVPFSSFINSWKQELGMI 67
+ + ++ + + G + + + + V K+E
Sbjct: 13 VAVLVGIVIIALAV-GYNYYSKRNKPQESKEFGFQALKINGTYVSTD----IMKEERNKF 67
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI-EDIGLEADHGRVWGEIAR 121
+K + R + +LD ++ L+ ++ G+ A V I R
Sbjct: 68 FEKYKRNADVLRMNDHERNDMLLDQVIERLLLEDYVNNKSGVTATDSEVEDYINR 122
>gi|218233359|ref|YP_002367018.1| peptidylprolyl isomerase [Bacillus cereus B4264]
gi|296502878|ref|YP_003664578.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
gi|218161316|gb|ACK61308.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus B4264]
gi|296323930|gb|ADH06858.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
Length = 283
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + K + Q +
Sbjct: 123 TDKDVKNNYKPEMKVSHILVKDEKTAKEIKEK-VNNGEDFAALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KDK +
Sbjct: 182 SGFAPGQTVKEFEEAAYKLDAGQV-SDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDI 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 271
>gi|228908084|ref|ZP_04071932.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
gi|228851502|gb|EEM96308.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 200]
Length = 293
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + K + Q +
Sbjct: 133 TDKDVKDNYKPEMKVSHILVKDEKTAKEIKEK-VNNGEDFAALAKQYSEDTGSKEQGGEI 191
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + + P++ Y + KVT+ K + KDK +
Sbjct: 192 SGFAPGQTVKEFEEAAYKLDAGQL-SEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDI 250
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 281
>gi|56963292|ref|YP_175023.1| protein export protein PrsA [Bacillus clausii KSM-K16]
gi|56909535|dbj|BAD64062.1| protein export protein PrsA [Bacillus clausii KSM-K16]
Length = 345
Score = 46.8 bits (108), Expect = 0.011, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 58/160 (36%), Gaps = 8/160 (5%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
E++ + +E + V+ E + V + +G++F ++ +
Sbjct: 138 DETLQTYFEENQEQFEQITARHILVEDEETANE-----VKDRLNDGEDFAELAEEYSTDT 192
Query: 529 LTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ N + + + + FS V + P+E+ + + +VT+ +
Sbjct: 193 QSAANGGDLGTFDREQMVPEFSEVAFSLDVNDI-SDPVESQFGFHIIEVTDKLDTFEDNR 251
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
D + KD +V+ L +Y+V ++D +
Sbjct: 252 DFVYDQIISEQGKD-FTTVLGELIDKYNVKINDEEFDAIV 290
>gi|317504768|ref|ZP_07962727.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
gi|315664099|gb|EFV03807.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
Length = 470
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 45/411 (10%), Positives = 111/411 (27%), Gaps = 31/411 (7%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
N + P+ + + K +E R +Q
Sbjct: 85 FAAYRNQQIPQTLDNDAETEVEARRLYAFTQQRVDASGGMIKVREILLRLGQRASKQTEI 144
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA--KK 335
++ D + +L+ G F ++A + + +LG +P +L + KK
Sbjct: 145 EVKQRIDSIYNALQHGADFGEMARRYSDNKTATNLGEHQPWLLPGQTLPEFETQAYALKK 204
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
G+ + GY I + + F +++ + + K RL+E
Sbjct: 205 GEMSTPFLTPAGYHIILIEDKSA----YFPYDSVRNDLLRFVSQRNLRNKLTAARLQERS 260
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
S ++++ +++ ++ A + ++ I + D +
Sbjct: 261 FAQRSSEDMALKKQAKDLEKENPQMANLMQEYRDGLLIFEVSKRTIWDKAAHDEAGLTNY 320
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
Y W P + + + + + + G
Sbjct: 321 FNHNKKKYKWS-----SPRYKGIIIHAKEAGEVKKVKKLLKHIEFNHWKEAIDQQFNAGG 375
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
+ R I + I+ + Y
Sbjct: 376 DVRIIATQGLFKSGDNSWIDYEIFKQGEAPQPI--------------------KDYPSIG 415
Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
V K+ + + + ++L + L+ +Y V +H +++
Sbjct: 416 VYGKKLKAPKALAEVRPLVLADYQEELERQWVKTLREKYPVIIHQEVLKTI 466
>gi|303238145|ref|ZP_07324681.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
cellulolyticus CD2]
gi|302594191|gb|EFL63903.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
cellulolyticus CD2]
Length = 249
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 72/190 (37%), Gaps = 4/190 (2%)
Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
+A+ + + K + + + K + I+ E + Y +NK + PE
Sbjct: 56 DAIEKGLENETEYLEEIERIKVNFLKQYALSKFLKSVTINEVEAKKFYNENKGLFNEPES 115
Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL---SDISLGSFSKEYIPDVSLA 326
++ ++ A++ + +GKKF A+E + LG FSK +
Sbjct: 116 VKASHILVQDEATANKILSEIDEGKKFEDAAKEYSTCPSKANGGDLGFFSKGQMV-PEFE 174
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
+ F+L K + FG+ I ++ + + ++F E + + ++ K + +
Sbjct: 175 TAAFALDKGEITKTPVKTQFGFHIIKLTGKRDAMELTFSEAEDKVKAELMAKKQQAEYYK 234
Query: 387 DYKRLEEFLA 396
L+
Sbjct: 235 KVDELKGKYD 244
>gi|238062749|ref|ZP_04607458.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
gi|237884560|gb|EEP73388.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149]
Length = 271
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 34/113 (30%), Gaps = 12/113 (10%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVS-VGRQKVPFSSFINSWKQELGMISQ-------KI 71
+ G+ + V + VG + + + +
Sbjct: 10 IAAASVAALGVLSLGACGKATPAVAAYVGDTRYSVDRVNEIYDDAQAKYADAIRSQAGQS 69
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH----GRVWGEIA 120
G + E+ RS + +L+ LVS + + + G+ ++ ++
Sbjct: 70 GATPSPEQLRSTVTRQDVLNLLVSIELGKRVVAEQGITVADEVKPEQLEQQLQ 122
>gi|167040994|ref|YP_001663979.1| hypothetical protein Teth514_2383 [Thermoanaerobacter sp. X514]
gi|300913795|ref|ZP_07131112.1| conserved hypothetical protein [Thermoanaerobacter sp. X561]
gi|307725518|ref|YP_003905269.1| hypothetical protein Thet_2431 [Thermoanaerobacter sp. X513]
gi|166855234|gb|ABY93643.1| hypothetical protein Teth514_2383 [Thermoanaerobacter sp. X514]
gi|300890480|gb|EFK85625.1| conserved hypothetical protein [Thermoanaerobacter sp. X561]
gi|307582579|gb|ADN55978.1| hypothetical protein Thet_2431 [Thermoanaerobacter sp. X513]
Length = 238
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 19/219 (8%), Positives = 52/219 (23%), Gaps = 35/219 (15%)
Query: 11 TWVAKIFLVVLFVPF----------------------LIWGLSDALFSVSGSSTVVSVGR 48
+ L ++ F + + + + V
Sbjct: 13 SVFLIFILAIVAFSFSAANPQEKANELQFNNVVKKVSAFFKNNKDKLQIGEGDIIAEVNG 72
Query: 49 QKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
+ + F L ++ +D IL L+ + +
Sbjct: 73 VPIYKNEFELRKGLALA------------SGVQADNIDDYILQKLIREKVQEYLASKYNI 120
Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
+ + I + + + + +A G+ E EY + Y K +R ++
Sbjct: 121 KVSQNEINAYIEKEKKEFNEYPE-AKKKLNELIAASGMTEDEYWNTYEKYNARRILLFNK 179
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ + + + + I +
Sbjct: 180 LYDSIIEEGIKSGKLKKAEDMTNDVQNEYKRYVDSIIDE 218
>gi|260426113|ref|ZP_05780092.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260420605|gb|EEX13856.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 282
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 39/144 (27%), Gaps = 15/144 (10%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+ +R R+ + F V+ + F + + + V +
Sbjct: 1 MTFLRAVLRSPLLH-FFVLGALVFAFYAARSPVPGAVPPNPQAIV----LTPED----AD 51
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ ++ + ++ + V+ L + +GL+ V + +
Sbjct: 52 ALASRFAAVWNRPPTAQEL------QGLMQDWVTEEALVREARALGLDEGDEIVRDRLRQ 105
Query: 122 SPLFHGKDNKFSHDVFVSRLAREG 145
LF + S L
Sbjct: 106 KMLFLAEAPAASRTPDTDALETYY 129
>gi|298291093|ref|YP_003693032.1| SurA domain protein [Starkeya novella DSM 506]
gi|296927604|gb|ADH88413.1| SurA domain protein [Starkeya novella DSM 506]
Length = 326
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 43/158 (27%), Gaps = 20/158 (12%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
A+ + + + + S +V V Q + K ++
Sbjct: 23 ARTLVAGMVAACALAAFPG---AASAQGILVMVQGQPITSFDVAQRIK------LAQLTE 73
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
++ + K+ L++L+ E G+ AD + AR G+
Sbjct: 74 RLSLSQ-------KQALEDLIDERLKIITAERGGVTADKDEIEKMFARMANRSGRT---- 122
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
D L + G++ + V
Sbjct: 123 PDQLTQALTQSGLDARMLKTKMRADYVWNSYVRGRYSS 160
>gi|229109756|ref|ZP_04239342.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
gi|229144911|ref|ZP_04273308.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
gi|229150538|ref|ZP_04278754.1| Foldase protein prsA 1 [Bacillus cereus m1550]
gi|228633031|gb|EEK89644.1| Foldase protein prsA 1 [Bacillus cereus m1550]
gi|228638633|gb|EEK95066.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST24]
gi|228673797|gb|EEL29055.1| Foldase protein prsA 1 [Bacillus cereus Rock1-15]
Length = 293
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + K + Q +
Sbjct: 133 TDKDVKNNYKPEMKVSHILVKDEKTAKEIKEK-VNNGEDFAALAKQYSEDTGSKEQGGEI 191
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KDK +
Sbjct: 192 SGFAPGQTVKEFEEAAYKLDAGQV-SDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDI 250
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 281
>gi|307266612|ref|ZP_07548142.1| conserved hypothetical protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|306918343|gb|EFN48587.1| conserved hypothetical protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 240
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 12/176 (6%), Positives = 40/176 (22%), Gaps = 12/176 (6%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + V + + F L + ++ +L LV
Sbjct: 61 NEGDIIAEVNGIPIYKNEFELRKGLTLA------------SEGQVNDINNFVLSKLVREK 108
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ L+ G + + + + + + A ++ + D+
Sbjct: 109 VKEYLAMKYNLKVSEGEINSYLEKEKQQFKESPEVDKKLKELISASGMTYDEYWNDYEKY 168
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
+ R + + + + ++ A +
Sbjct: 169 NVKRMLLFDKLYNTIINEGIKSGKLEKTDKMTVDTQNEYKKYVDSIIDQYVKQAKI 224
>gi|291326505|ref|ZP_06124797.2| peptidylprolyl cis-trans isomerase SurA [Providencia rettgeri DSM
1131]
gi|291313964|gb|EFE54417.1| peptidylprolyl cis-trans isomerase SurA [Providencia rettgeri DSM
1131]
Length = 460
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 18/198 (9%), Positives = 53/198 (26%), Gaps = 7/198 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR-KLEEVLTD 485
G + + ++F K+ Y +++ + + EV
Sbjct: 250 GNMGWSRLQELPVVFAEQLKNAKKGDVVGPIRSGVGYHILRVNDVSGGSQPISVTEVKAR 309
Query: 486 -VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNENKF 543
+ + + K ++ E +F D K + N
Sbjct: 310 HILIKSSPIMDDAQARQKLTKIAQEIRSGKISFEDAAKENSEDPGSALKGGELGWNMPDI 369
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNK 600
+ + + P+++ + + ++ + +KD+ L
Sbjct: 370 YDPAFRDALMRLNKGELSQ-PVQSNFGWHLIQLEDTRNVDKTDAAQKDQAYRLLFNRKFN 428
Query: 601 DLLDSVIAYLKSQYSVTV 618
+ S + ++ V +
Sbjct: 429 EEAQSWMQEQRASAYVKI 446
>gi|197302599|ref|ZP_03167654.1| hypothetical protein RUMLAC_01328 [Ruminococcus lactaris ATCC
29176]
gi|197298497|gb|EDY33042.1| hypothetical protein RUMLAC_01328 [Ruminococcus lactaris ATCC
29176]
Length = 368
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP------FSSFIN-SWKQEL 64
VA + L + G +TV +VG +K+ ++ ++
Sbjct: 7 KVAVLTLAGAIAAMSVTGCGSI----KEDATVATVGEEKITLGVANFYARLQQGQYETYY 62
Query: 65 GMISQKIGFVVNSERA-----RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ G + S+ A I+++L + L Q + + I
Sbjct: 63 AGMMGTTGEAMWSQDASDGKDYEEQTKDNIMESLENLYLLSQHASEYNVSLSDDE-KKAI 121
Query: 120 ARSPLFHGKDN 130
+ GKDN
Sbjct: 122 KDAAEQFGKDN 132
>gi|302872296|ref|YP_003840932.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
obsidiansis OB47]
gi|302575155|gb|ADL42946.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
obsidiansis OB47]
Length = 331
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 57/159 (35%), Gaps = 6/159 (3%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL--G 525
+ +++ + + D+ + + + AN++V E K+G++F + K
Sbjct: 169 VNYYNTNKNQFKKIKIMDIFLKVENEEEDVQKREIANKIVSEL-KKGEDFEKLVKKYTED 227
Query: 526 ASLLTTNQIN---RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S+ T I R + +G +VF V V ++V + +
Sbjct: 228 ESVGITKGIIDYFRKGEKEAEYGSVFEEEVFKLAVGQVSNIIKTIKGYHIVKVLDEKYMP 287
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ K + S L + + I LK + V+ +
Sbjct: 288 LDEVKGEIQSKLMKQKKDQVFRLYIENLKKSSKINVYKD 326
Score = 37.5 bits (84), Expect = 6.6, Method: Composition-based stats.
Identities = 13/155 (8%), Positives = 30/155 (19%), Gaps = 7/155 (4%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA-----RSVGLDKKILDNLVS 95
V+ V ++V + + Q ++ L ++ L
Sbjct: 27 KVVLEVNGEQVTKREYKIRFNTLKENAIQFSSRADILDQVFNGKTYRELLKDELFTILTE 86
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
Q + + F L + G +E +
Sbjct: 87 ELLCLQDARRRNIYLTKQEEEEIKKYIEELKANEEM--RSYFNQYLRKIGSDENHFYRDL 144
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
K + S+ +
Sbjct: 145 HKTRIINKLYSSITSKTTVSDSEIVNYYNTNKNQF 179
>gi|301052807|ref|YP_003791018.1| peptidylprolyl isomerase [Bacillus anthracis CI]
gi|300374976|gb|ADK03880.1| peptidylprolyl isomerase [Bacillus cereus biovar anthracis str. CI]
Length = 285
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 26/246 (10%), Positives = 84/246 (34%), Gaps = 20/246 (8%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + I++ + D + K K +K L
Sbjct: 42 DFEKQLKDRYGKDMLYEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ L + + E ++V K + K ++A +
Sbjct: 102 DEADFKNQIKFKLSMNKAIKQSVTE---------KDVKDHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ + + + + + + + + P
Sbjct: 153 IKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFHSGAMTPEFETAAYKLKIGQI-SDP 210
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD------LLDSVIAYLKSQYSVTV 618
+++ Y + K+T K ++ D+ + + + + ++ +++ + ++ +
Sbjct: 211 VQSPNGYHIIKLTGKK--DLKPYDEVKNSIRKNLEEERTADPIFGKNLLQSELKKANIKI 268
Query: 619 HDNLIQ 624
+D+ ++
Sbjct: 269 NDSELE 274
>gi|126699161|ref|YP_001088058.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630]
gi|255306527|ref|ZP_05350698.1| putative peptidyl-prolyl isomerase [Clostridium difficile ATCC
43255]
gi|115250598|emb|CAJ68422.1| putative peptidylprolyl isomerase [Clostridium difficile]
Length = 318
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 18/184 (9%), Positives = 53/184 (28%), Gaps = 6/184 (3%)
Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS-----ERAR 81
+ G+ + ++ V ++ + + + G ++ ++
Sbjct: 9 MVGILSLMMVGCN-KSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKG 67
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
L+ I+ +V L Q +D GL V + + + + + +
Sbjct: 68 RNKLENVIISFMVDNELLYQEAKDKGLTPSKSEVDSKYQELEDKMNLNTSYKEKMDKAGV 127
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
++ + ++ D + + + K F E S I+++
Sbjct: 128 DKDYLKQEISRDLAIDKNKKAFEDRINISDNDMEAYYTSHKKDFNVEEVSASQILISTLD 187
Query: 202 VPAI 205
Sbjct: 188 KNKK 191
>gi|15964904|ref|NP_385257.1| hypothetical protein SMc00581 [Sinorhizobium meliloti 1021]
gi|15074083|emb|CAC45730.1| Hypothetical protein SMc00581 [Sinorhizobium meliloti 1021]
Length = 316
Score = 46.8 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 33/287 (11%), Positives = 66/287 (22%), Gaps = 19/287 (6%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTV-VSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
L + + + + + + +STV V V + + ++ G
Sbjct: 12 LLSAVALAGALSVAAGTVTTAMAASTVEVVVNSTVITSGDVAKRVAFLK--LQRQSGGAA 69
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ LV I + V AR NK S +
Sbjct: 70 ------------EAKQQLVDEVLKRAEIARVQQSVSTDEVDAAFARFAA----GNKLSPE 113
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
L + G+ + + +S VV G + +
Sbjct: 114 QLGKILDQAGVGVDHFKQYIAVQMSWPRVVNFRYGSASRLSGGDLVKRMMQGGGNKPVTT 173
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+ V + S + + N ++ S + A
Sbjct: 174 EYFLQQVIFVIPESKRGAITAKRQAEANASRSQFPGCDTSKAFAANYRDVSIRSLGRILA 233
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
+ K + ++ E KK + A E
Sbjct: 234 QQLPEDWKPLVEKAGDGMTTGTRVTEKGVEYLAICKKRQVNDDAAAE 280
>gi|254252165|ref|ZP_04945483.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
AUO158]
gi|124894774|gb|EAY68654.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
AUO158]
Length = 260
Score = 46.8 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 44/119 (36%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A +L+ + K G F D+ K + +D ++ K + + +
Sbjct: 143 EQQAKELIAKI-KAGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + D+ + + Q + + L + L+ Q +
Sbjct: 202 QMTDQPVKTQFGWHIIRVDDIRDIAPPPFDQVKAQIAQQIVQQKLQAFEEGLRQQAKIQ 260
Score = 42.2 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + ++ E++A Y++ + + ++ ++++A E +K G KF
Sbjct: 101 MIENFLKKNQPTDAEVKARYDELVKGAGGNREYHLHHILVDSEQQAKELIAKIKAGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I V
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDQPVKTQFGWHIIRVD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+I+ F +VK IA Q+ K + ++
Sbjct: 221 DIRDIAPPPFDQVKAQIAQQIVQQKLQAFEEGLRQQ 256
Score = 37.5 bits (84), Expect = 7.3, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + + S L + + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADAMVAQLVQQ-----------GQTDSPQLQQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIREGI 79
>gi|254975115|ref|ZP_05271587.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-66c26]
gi|255092504|ref|ZP_05321982.1| putative peptidyl-prolyl isomerase [Clostridium difficile CIP
107932]
gi|255314242|ref|ZP_05355825.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-76w55]
gi|255516921|ref|ZP_05384597.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-97b34]
gi|255650024|ref|ZP_05396926.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-37x79]
Length = 318
Score = 46.8 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 19/184 (10%), Positives = 53/184 (28%), Gaps = 6/184 (3%)
Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS-----ERAR 81
+ G+ + ++ V ++ + + + G ++ ++
Sbjct: 9 MVGILSLMMVGCN-KSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKG 67
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
L+ I+ +V L Q +D GL V + + + + + +
Sbjct: 68 RNKLENVIISFMVDNELLYQEAKDKGLTPSKSEVDSKYQELEDKMNLNTSYKEKMDKAGV 127
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
+E + ++ D + + + K F E S I+++
Sbjct: 128 DKEYLKQEISRDLAIDKNKKAFEDRINISDNDMEAYYTSHKKDFNVEEVSASQILISTLD 187
Query: 202 VPAI 205
Sbjct: 188 KNKK 191
>gi|89885882|ref|YP_516080.1| hypothetical protein Rfer_4396 [Rhodoferax ferrireducens T118]
gi|89347880|gb|ABD72082.1| hypothetical protein Rfer_4396 [Rhodoferax ferrireducens T118]
Length = 274
Score = 46.8 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 29/121 (23%), Gaps = 6/121 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
A Q L+ + K K F YD + + V
Sbjct: 158 ATDEDATQFALKLREGDKEAAAKLKPFLNPAGKAIAF-----APADFPYDMGKLIQTMKV 212
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V + + V +V G + L + + + L+ +
Sbjct: 213 GEV-SGSLATRNGFFVVRVDEVVPGKRPAIKEIKEQLRSALVNQRVGEKLQQLRKGAKIE 271
Query: 618 V 618
+
Sbjct: 272 L 272
>gi|255655579|ref|ZP_05400988.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-23m63]
gi|296451569|ref|ZP_06893304.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP08]
gi|296878826|ref|ZP_06902826.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP07]
gi|296259634|gb|EFH06494.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP08]
gi|296430098|gb|EFH15945.1| probable peptidyl-prolyl isomerase [Clostridium difficile NAP07]
Length = 318
Score = 46.8 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 19/184 (10%), Positives = 53/184 (28%), Gaps = 6/184 (3%)
Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS-----ERAR 81
+ G+ + ++ V ++ + + + G ++ ++
Sbjct: 9 MVGILSLMMVGCN-KSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKG 67
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
L+ I+ +V L Q +D GL V + + + + + +
Sbjct: 68 RNKLENVIISFMVDNELLYQEAKDKGLTPSKSEVDSKYQELEDKMNLNTSYKEKMDKAGV 127
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
+E + ++ D + + + K F E S I+++
Sbjct: 128 DKEYLKQEISRDLAIDKNKKAFEDRINISDNDMEAYYTSHKKDFNVEEISASQILISTLD 187
Query: 202 VPAI 205
Sbjct: 188 KNKK 191
>gi|167836282|ref|ZP_02463165.1| peptidyl-prolyl cis-trans isomerase domain protein [Burkholderia
thailandensis MSMB43]
Length = 259
Score = 46.8 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 23/180 (12%), Positives = 57/180 (31%), Gaps = 10/180 (5%)
Query: 447 DDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-------- 498
+ P K V + + I++ + E+ + K E
Sbjct: 81 NRPDVKAQIVVAQQTAVLRALIEDFLKKNQPSDAELKARYDELVKNAGGREYHLHHILVD 140
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPV 557
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 141 NEQQAKDLIAKI-KGGAKFEDLAKQFSKDPGSAKNGGDLDWSDPKAYVPEFAAAAQQLQK 199
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + ++ + Q M + L + L+ Q +
Sbjct: 200 GQMTDAPVKTQFGWHIIRVDDVRSITPPPFEQVKQQIAQQMVQQKLQTFEEGLRQQAKIQ 259
Score = 37.9 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + Q + L++ + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADAMIAQLVQQGQQ-----------DTPQLEQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIKRGI 79
>gi|329923364|ref|ZP_08278848.1| conserved domain protein [Paenibacillus sp. HGF5]
gi|328941456|gb|EGG37748.1| conserved domain protein [Paenibacillus sp. HGF5]
Length = 363
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 31/308 (10%), Positives = 79/308 (25%), Gaps = 26/308 (8%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+ F +++ V L+ + + + +V ++ S F + I
Sbjct: 11 LKWLFIAGFFILIVVTILLIAKPAFTQTHHEDAYIATVDGVEIHVSEFQRAIDANRAGII 70
Query: 69 QKIGFVVNS-------------ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ ++ + KK L++ ++ ++ G+
Sbjct: 71 KYFHEKYDAAPSAAFWTTPYGGNEIPLELIKKKALEDSINQKIRQILAKEQGVLP----- 125
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
+ G F+ + + A + YT+ V+ V
Sbjct: 126 ------DISYAGFMQNFNLENQRRQQAIKNHQVIFGPAQYTEEAYYEYVLANTVLS--VK 177
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
N L++ + + Y R A A L+ F N +
Sbjct: 178 NHLMEHDWKPSEQQLITFYEANKRRLYHAPATVKVRQLSLSFLDANRNVDTLLKTQEKRK 237
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ EK ++ + ++ + + V +A + +
Sbjct: 238 IETAREKISSGVSFEQAVKDIKQDDRVTEQVYNLDSYRHNVRSPVAQASADLLPGEVSEI 297
Query: 296 FIQLAEEQ 303
+
Sbjct: 298 IEENGSFY 305
Score = 41.4 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 31/332 (9%), Positives = 76/332 (22%), Gaps = 14/332 (4%)
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
D + + I +I + A + +
Sbjct: 37 QTHHEDAYIATVDGVEIHVSEFQRAIDANRAGIIKYFHEKYDAAPSAAFWTTPYGGNEIP 96
Query: 364 FQEVKKDIANQMRITKASEKVK-------EDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ +KK K + + + + + I P
Sbjct: 97 LELIKKKALEDSINQKIRQILAKEQGVLPDISYAGFMQNFNLENQRRQQAIKNHQVIFGP 156
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+ + + L K +
Sbjct: 157 AQYTEEAYYEYVLANTVLSVKNHLMEHDWKPSEQQLITFYEANKRRLYHAPATVKVRQLS 216
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ +V KT + + + E G +F K++ T Q+
Sbjct: 217 LSFLDANRNVDTLLKTQEKRKI------ETAREKISSGVSFEQAVKDIKQDDRVTEQVYN 270
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLT 595
+D+ V ENG Y++ + ++G D +
Sbjct: 271 LDSYRHNVRSPVAQASADLLPGEVSEIIEENGSFYLMLCMEKDQLGSKYLGFDGIREQVL 330
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ + + + + V +++ L +++L
Sbjct: 331 KDYIDNQYEEYVRQRLTDAKVVLNEELYRKFL 362
>gi|303245476|ref|ZP_07331760.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
gi|302493325|gb|EFL53187.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ]
Length = 576
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 9/163 (5%)
Query: 5 IRKASRTW--VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
+R A+ ++ +A LV + L+ G G V VG + + +
Sbjct: 1 MRLAAPSFRGLAVCLLVFFALSALLGGCGRDTAKEPG--VVAMVGGAPIRLADVEARYDL 58
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+ + V + RA K+L +++ + Q + + R
Sbjct: 59 GEIGLPEVDNPPVETLRAAYG----KVLADMIVARLVRQELARRHESVTEAEIAAVEKRV 114
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
+ F + R+ E + +R +
Sbjct: 115 RA-DYPGDSFDRMLLEERIDLARWREMLADRLALEKFTREVLR 156
Score = 42.2 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 9/124 (7%)
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
K G+ + G ++ K + S E G S
Sbjct: 204 RKSGRKLESLAGRSGITVRDAV------LPEKNLPAPWREALKSLKEGEPTTILTEGGES 257
Query: 571 YVVF---KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
++ + P + + + L + +A ++++ L+
Sbjct: 258 LFCILQERLPAKVIDPAKAYARVEAILAGGKTAKAFAAWLAETLRTTKISINKELLAAMS 317
Query: 628 DGEK 631
G +
Sbjct: 318 PGRE 321
>gi|229120788|ref|ZP_04250031.1| Foldase protein prsA 2 [Bacillus cereus 95/8201]
gi|228662793|gb|EEL18390.1| Foldase protein prsA 2 [Bacillus cereus 95/8201]
Length = 285
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 27/246 (10%), Positives = 84/246 (34%), Gaps = 20/246 (8%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + I++ + D + K K +K L
Sbjct: 42 DFEKQLKDRYGKDMLYEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ L + + E ++V K + K ++A +
Sbjct: 102 DEADFKNQIKFKLSMNKAIKQSVTE---------KDVKDHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ + + N + + + + + P
Sbjct: 153 IKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKIGQISN-P 210
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS------VIAYLKSQYSVTV 618
+++ Y + K+T+ K ++ D+ + + + ++ + ++ + ++ +
Sbjct: 211 VKSPNGYHIIKLTDKK--ELKPYDEVKDSIRKNLEEERITDPIFGKKLLQSELKKANIKI 268
Query: 619 HDNLIQ 624
+D+ ++
Sbjct: 269 NDSELE 274
>gi|229132060|ref|ZP_04260923.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST196]
gi|228651460|gb|EEL07432.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST196]
Length = 285
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 20/219 (9%), Positives = 65/219 (29%), Gaps = 11/219 (5%)
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ ++ K + + F ++ +
Sbjct: 57 YEMVAQDVITKKYKVSDDAVDKEVEKAKDQYGEQFKATLENNRLKDEEDFKNQIKFKLAL 116
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ ++V K + K ++A ++ + G +F ++ K L
Sbjct: 117 NEAIKQSVTEKDVKDHYKPEIKASHILVSNENEAKEIKKKLDT-GTSFEELAKQESQDLA 175
Query: 530 TTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + + + + + P+++ Y + K+T+ K +Q D
Sbjct: 176 SKDNGGDLGYFGAGKMTPEFEKAAYKLKPGQISN-PVKSPNGYHIIKLTDKK--DLQPYD 232
Query: 589 KFISYLTQMMNKDLL------DSVIAYLKSQYSVTVHDN 621
K + + + ++ L ++ + + ++D+
Sbjct: 233 KVKDSIRKDLEEERLADPSFGQKLLQDELKKADIKINDS 271
>gi|225375916|ref|ZP_03753137.1| hypothetical protein ROSEINA2194_01552 [Roseburia inulinivorans DSM
16841]
gi|225212237|gb|EEG94591.1| hypothetical protein ROSEINA2194_01552 [Roseburia inulinivorans DSM
16841]
Length = 333
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 29/232 (12%), Positives = 66/232 (28%), Gaps = 9/232 (3%)
Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ E +M E+++ + + ++ K K A L
Sbjct: 77 WQHDFGDSSLENYVKNITMQELAQVVCLDQLAKEKEMELSEEEKEKTAQAAEEYFASLTE 136
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+S+ + + ++ EEV D + + ++ S+
Sbjct: 137 DETAYMGVSESDIKEYYEHYALAQKV--YHSLTKAVNEEVSDDEARVMEIMQIFVSDESR 194
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
AN++ ++ G++F + N I+R D F + V
Sbjct: 195 ANEIASRLAQ-GEDFATLANNYNELGSIQVNISRDD-----LPAAVEEIAFQMENDEVSG 248
Query: 563 FPIENGLSYVVFKVTNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+G Y + + K + + D + ++ L S
Sbjct: 249 KITVDGGFYFIKCLNKYNQELTEANKANIVDKREKEAFDDEYNGFVSSLSSN 300
>gi|197124849|ref|YP_002136800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
K]
gi|196174698|gb|ACG75671.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
K]
Length = 354
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 44/149 (29%), Gaps = 11/149 (7%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+ L ++ + + S V + + ++ I +
Sbjct: 5 IVLLGLVALA-ATACQPGSKDSKKSGPAVATGNGFTITAGEMKARLDEQSPFIRARY--- 60
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
++ K+ LDNL+ L + E GL A+ V + + + F
Sbjct: 61 ------STLERKKEFLDNLIRFEVLAREAERQGL-ANDPDVQLTLKKVMVQKLVQKNFQD 113
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ A + ++Y D + R
Sbjct: 114 ANGAAAEAMPEADLQKYYDEHKAEYYRPR 142
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 10/97 (10%), Positives = 27/97 (27%), Gaps = 3/97 (3%)
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF---KVTNSKVGPVQEKDK 589
++ K + + F+ Y+V + Q K +
Sbjct: 206 GFKSREDLEKAYSKEFADVTFNLQPGATSGVLETANAVYLVKGTGEQDELNRTFEQVKAQ 265
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ L + D + L+ V++ + ++
Sbjct: 266 IQTKLYREKKTKEFDGWLKKLRDDAKVSIDEKALEAV 302
>gi|260683172|ref|YP_003214457.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
gi|260686770|ref|YP_003217903.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
gi|260209335|emb|CBA62746.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
gi|260212786|emb|CBE03939.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
Length = 310
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 19/184 (10%), Positives = 53/184 (28%), Gaps = 6/184 (3%)
Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS-----ERAR 81
+ G+ + ++ V ++ + + + G ++ ++
Sbjct: 1 MVGILSLMMVGCN-KSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKG 59
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
L+ I+ +V L Q +D GL V + + + + + +
Sbjct: 60 RNKLENVIISFMVDNELLYQEAKDKGLTPSKSEVDSKYQELEDKMNLNTSYKEKMDKAGV 119
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
+E + ++ D + + + K F E S I+++
Sbjct: 120 DKEYLKQEISRDLAIDKNKKAFEDRINISDNDMEAYYTSHKKDFNVEEVSASQILISTLD 179
Query: 202 VPAI 205
Sbjct: 180 KNKK 183
>gi|307721593|ref|YP_003892733.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
autotrophica DSM 16294]
gi|306979686|gb|ADN09721.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
autotrophica DSM 16294]
Length = 276
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 8/79 (10%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
S++ + T+V+V + + ++ R +++L L+
Sbjct: 15 GSIASAKTLVTVNGKAITQQDVDTELMNATQGRFNQVPAD------RQAAFRQQVLQQLI 68
Query: 95 SGATLDQFIEDIGLEADHG 113
+ + G+
Sbjct: 69 GKELIYNDAKKSGIINSKE 87
>gi|163759891|ref|ZP_02166975.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Hoeflea
phototrophica DFL-43]
gi|162282849|gb|EDQ33136.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Hoeflea
phototrophica DFL-43]
Length = 283
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 62/147 (42%), Gaps = 4/147 (2%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ---GK 305
S+ +++A Y++ + E + ++ + EA L GK F +LA+E+
Sbjct: 119 SDADVKARYDQEVAATQAEEEISARHILVETEDEAKALITELDAGKDFAELAKEKSTGPS 178
Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
+ + LG F+K + + F+L K + FG+ + V + + + F+
Sbjct: 179 AGNGGDLGYFTKGRMV-PEFEAAAFALEKGQYGKEPVKTQFGWHVIKVEDRRDAAPPPFE 237
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLE 392
+V I + + E ++E ++
Sbjct: 238 QVADQIRQVLLRERYGELIREARDNVD 264
>gi|6006449|emb|CAB56780.1| p13 protein [Dictyostelium discoideum]
Length = 91
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 10/72 (13%), Positives = 25/72 (34%)
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS 605
V + P++ + V +V +++ D+ L +M+ + L +
Sbjct: 20 QPFAEAVTKLKKGQLVDKPVQTQFGWHVIQVDDTRPVEFPAMDQVRPQLEEMLRQQTLAN 79
Query: 606 VIAYLKSQYSVT 617
L+ Q +
Sbjct: 80 YQKQLREQAKIQ 91
>gi|114320159|ref|YP_741842.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola
ehrlichii MLHE-1]
gi|114226553|gb|ABI56352.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkalilimnicola
ehrlichii MLHE-1]
Length = 260
Score = 46.4 bits (107), Expect = 0.013, Method: Composition-based stats.
Identities = 28/237 (11%), Positives = 60/237 (25%), Gaps = 5/237 (2%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
++ + +++ L + EV +Q L V
Sbjct: 12 HHAINIESAHHKRPDLDPREAQEQAALALTLRELLRQRALQLDLEVPEDDSDDQALDAVI 71
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+ L D A W + E V + ++ E+ A
Sbjct: 72 DRLIELEVDIPQADEATCRRWFEQNPDHFRTPDLAEVRHILVAGHPEDLEEREQARQTAE 131
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
L+ + + F + + + V PV + P
Sbjct: 132 GLIRQLQADPAAFPALATAHSRCPSSEQGGLLGQVSRGETVPEFEDAVLRLPVGLAPQ-P 190
Query: 565 IENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
I+ + V +V G ++ YL + + L+ + L + +
Sbjct: 191 IKTRYGFHVVEVLQRIPGTALPFEAVHERIAEYLEAVSRQRALNQYLRLLVGEADIK 247
>gi|297544426|ref|YP_003676728.1| hypothetical protein Tmath_0987 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842201|gb|ADH60717.1| conserved hypothetical protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 238
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 17/167 (10%), Positives = 45/167 (26%), Gaps = 13/167 (7%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
+ + + + V + + F L ++ +
Sbjct: 50 AFFKNNKDKLQIGEGDIIAEVNGIPIYKNEFELRKGLALA------------SGVQADNI 97
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
D IL L+ + ++ + I + + + + +A G
Sbjct: 98 DDYILQKLIREKVQEYLASKYNIKVSQNEINAYIEKEKKEFNEYPE-AKKKLNELIAASG 156
Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ E EY + Y K +R ++ + + + + S
Sbjct: 157 MTEVEYWNTYEKYNARRILLFNKLYNSIIEEGIKRGELKKVEQMTSD 203
>gi|237751766|ref|ZP_04582246.1| peptidyl-prolyl cis-trans isomerase [Helicobacter bilis ATCC 43879]
gi|229373132|gb|EEO23523.1| peptidyl-prolyl cis-trans isomerase [Helicobacter bilis ATCC 43879]
Length = 280
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 26/246 (10%), Positives = 72/246 (29%), Gaps = 12/246 (4%)
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
+ ++ F + + + + + A K+ K
Sbjct: 38 EISDSIFSALKQQNPSFNYDALPEAQKKQLLDEIIDGVVTANAAKKEGLDKSEEYRMANL 97
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
Q+L ++ K S T+ + K+ A + +V+ K +
Sbjct: 98 QMLSGLWLKKQVDSLSKTINVS-----VADAKKFYDANPKAFVTQNAEVRHILV-QKEQD 151
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN--QINRMDNENKFFGYDGISQVFSG 555
+ A + +K F ++ K L + + + ++ + + +V
Sbjct: 152 AKNIIAEINKVPKAKTESKFEELAKKLSIDPGSKDNGGLMKLPINSPAIAPEFAQEVLKM 211
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY----LK 611
P++ Y + + Q D L +++ + ++ V+ ++
Sbjct: 212 SAGTYTKNPVKTRYGYHIIYLKKLDKPATQTFDSVKGQLVELLKQQKMEEVLKEKVKKMR 271
Query: 612 SQYSVT 617
+T
Sbjct: 272 DSAKIT 277
>gi|255100589|ref|ZP_05329566.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-63q42]
Length = 318
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 18/184 (9%), Positives = 53/184 (28%), Gaps = 6/184 (3%)
Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS-----ERAR 81
+ G+ + ++ V ++ + + + G ++ ++
Sbjct: 9 MVGILSLMMVGCN-KSLAKVNDVEITKEQYKKTKAVLSATNNYINGQSLDELEKTLDKKG 67
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
L+ I+ +V L Q +D GL V + + + + + +
Sbjct: 68 RNKLENVIISFMVDNELLYQEAKDKGLTPSKSEVDSKYQELEDKMNLNTSYKEKMDKAGV 127
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
++ + ++ D + + + K F E S I+++
Sbjct: 128 DKDYLKQEISRDLAIDKNKKAFEDRINISDNDMEAYYTSHKKDFNVEEVSASQILISTLD 187
Query: 202 VPAI 205
Sbjct: 188 KNKK 191
>gi|222094890|ref|YP_002528950.1| peptidylprolyl isomerase [Bacillus cereus Q1]
gi|221238948|gb|ACM11658.1| protein export protein prsA [Bacillus cereus Q1]
Length = 285
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 31/267 (11%), Positives = 88/267 (32%), Gaps = 20/267 (7%)
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
K D T ++ + K+L++ + +++ + D +
Sbjct: 21 CGQKNDSDTVATATDSTITKSDFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDDDVDKEL 80
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
K K +K L + L + I E ++V
Sbjct: 81 QKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAMNEAIKKSITE---------KDVKD 131
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF- 543
K + K ++A ++ + G +F ++ K LL+ + + N
Sbjct: 132 HYKPEIKASHILVSDENEAKEIKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGR 190
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603
+ + + V + P+ + Y + K+T+ K ++ D+ + + + ++ +
Sbjct: 191 MAPEFETAAYKLKVGQISN-PVASPNGYHIIKLTDKK--ELKPYDEVKDSIRKNLEEERI 247
Query: 604 DS------VIAYLKSQYSVTVHDNLIQ 624
++ + ++ ++D+ ++
Sbjct: 248 SDPIFGKKLLQNELKKANIKINDSELE 274
>gi|329962622|ref|ZP_08300570.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057]
gi|328529653|gb|EGF56551.1| PPIC-type PPIASE domain protein [Bacteroides fluxus YIT 12057]
Length = 523
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 52/510 (10%), Positives = 119/510 (23%), Gaps = 35/510 (6%)
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
LA + + K + R++ + ++ + Q + + V
Sbjct: 22 LAVIAQPDPVLMRINGKEVFRSEFEYACRQNGKLADGVRKQRQDLLDWFVNFKLKVAEAE 81
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
+ V + + K++ Q
Sbjct: 82 AAGLD---TAEVFRSRLDSCRRQLVKSYLTDEETNERVARRFYDKMKSGRRAGQVRVSHI 138
Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
+ + V E+ F ++ + +
Sbjct: 139 YKSLPQNISGYTLRKVEAKMDSIYESLGKGATAAAFDAYVKDFSDDKTTFWVRWLQM--- 195
Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
+ + + + G+ + G I V + + ++ I + R
Sbjct: 196 --PAEFEEVAFDLQPGEISRPFFTPQGIHIVKVLER-KAVPPFDEVKEEMIRCRTRRHGM 252
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
+ + ++L++ + L G+ GKE A
Sbjct: 253 DKGTEALVEKLKQEYHYTPDRAGMEELMSKGQTGRTLFTLGGRSYTGKEFARFAAAHPEG 312
Query: 441 FRVFGKDDPLSKDHTVALP--DGSYMWVQIKESIPARDRKLEEVLT-DVKKDWKTVKT-- 495
+ + + Y ++ D E+ +V KT +
Sbjct: 313 IQRQLNGFVMKSVLDYENNHLERKYPVFRLLMQKYREDMLFNEISNREVWGRSKTDEAGL 372
Query: 496 ------------AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
E K L + K R K G R+
Sbjct: 373 KGYFEDHRQNYHWEAPRYKGIVLHCTSKRVSKQVRKFLK--GLPENEWLDAIRLTFNVGD 430
Query: 544 FGYDGISQ-VFSGPVEMVKCFPIENG------LSYVVFKVTNSKVGPVQEKDKFISYLTQ 596
Q +F+ + G +S+ V KV ++ + L
Sbjct: 431 TPKVQAEQGLFARGDNAYVDDLVFKGKEPAPVMSFPFTAVLGKKVKGPEDYREVGGQLVT 490
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L IA L++ V ++ +++
Sbjct: 491 DYQNYLEQRWIAKLRAAGKVEINQEVLKTV 520
>gi|134291084|ref|YP_001114853.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
vietnamiensis G4]
gi|134134273|gb|ABO58598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
vietnamiensis G4]
Length = 262
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 33/123 (26%), Gaps = 4/123 (3%)
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
+ +A + + F + + N + + +F G
Sbjct: 127 LRERAQAALADVLAAPDTFEAVARASSNCPSAQVGGNLGQLLRGDTVPEFEAALFDGDAL 186
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPV----QEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
V + + + ++ G + + YL Q + + + +A L
Sbjct: 187 GVLPKLVNTRFGFHIVRIERRVPGAAVPFDEAAGQIAEYLAQCVRQRAMRQYVAVLAGAA 246
Query: 615 SVT 617
+
Sbjct: 247 RIE 249
>gi|154175136|ref|YP_001408066.1| trimethylamine-n-oxide reductase 1 [Campylobacter curvus 525.92]
gi|112802868|gb|EAU00212.1| trimethylamiNe-n-oxide reductase 1 (tmaoreductase 1)
(trimethylamine oxidase 1) [Campylobacter curvus 525.92]
Length = 272
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 21/207 (10%), Positives = 56/207 (27%), Gaps = 11/207 (5%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
L +G + + + A+ ++ + T ++
Sbjct: 71 LKDAKASGIEKDPEYIKAVQAAQEGIAVELYMRKIFDGIKTSDDELRNFYNKNKDSLNQP 130
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ + V+ + ++ + + + E I K A
Sbjct: 131 AQARASHI--LVEDEKTANAIIAQLKNLKGDALAKKFAELAQADSIDKGSAAHGGELGWF 188
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
+ VFS V P+++ Y + +SK V ++ +
Sbjct: 189 GQSQ-----MVKPFADAVFSMSKGSVSTKPVKSQFGYHIILKEDSKPAGVVSFEQAKPQI 243
Query: 595 TQMMNKDLLDSVI----AYLKSQYSVT 617
Q + + + I L+++ +
Sbjct: 244 EQAVKMEKFQNTIRQKGDALRAKAKIE 270
>gi|134295947|ref|YP_001119682.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
vietnamiensis G4]
gi|134139104|gb|ABO54847.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
vietnamiensis G4]
Length = 260
Score = 46.4 bits (107), Expect = 0.014, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 143 EQQAKDLIAKI-KAGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + +V + + D+ + + Q + + L + L+ Q +
Sbjct: 202 QMTDQPVKTQFGWHIIRVDDVRDVAPPPFDQVKAQIAQQIVQQKLQAFEEGLRQQAKIQ 260
Score = 41.8 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + ++ E++A Y+ + + ++ N+++A + +K G KF
Sbjct: 101 MIENFLKKNQPTDAEVKARYDDLVKGAGGNREYHLHHILVDNEQQAKDLIAKIKAGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I V
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDQPVKTQFGWHIIRVD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+++ F +VK IA Q+ K + ++
Sbjct: 221 DVRDVAPPPFDQVKAQIAQQIVQQKLQAFEEGLRQQ 256
Score = 40.2 bits (91), Expect = 0.96, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + +A S L + + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRVDAMVAQLVQQ-----------GQADSPQLQQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIREGI 79
>gi|222053408|ref|YP_002535770.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
FRC-32]
gi|221562697|gb|ACM18669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp.
FRC-32]
Length = 296
Score = 46.4 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 24/250 (9%), Positives = 69/250 (27%), Gaps = 17/250 (6%)
Query: 383 KVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFR 442
+ + + + + + + + + L + + P ++ L
Sbjct: 38 RQADLERVIANLTPEAQQKFQGEQEQASLVNQILLTKALAAKARKEGFERKPEVKEQLSY 97
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK--------TVK 494
+ + V + ++K+ ++ V VK T +
Sbjct: 98 IIDQFLGQEYLRKVVTANVEVPDAELKKYYQEHEKDFV-VPERVKVRHIYFAAAKDATAE 156
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF--GYDGISQV 552
+ +KA ++ + K G +F + + + +
Sbjct: 157 VKAQARAKAEKIAEQLKKGG-DFAKLAGENSEDTESAANGGDLGYLTPGKTNSEEFEKAA 215
Query: 553 FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIA 608
FS V +E Y + KV + ++ Y++ + L + +
Sbjct: 216 FSLKAGEV-SPVVETPFGYHIIKVDERQEKRTATFEETKDYISSTLKAQLEEKKAREFLD 274
Query: 609 YLKSQYSVTV 618
+ + + V
Sbjct: 275 AVAKEGGLQV 284
>gi|146329550|ref|YP_001209813.1| PpiC-type peptidylprolyl cis-trans isomerase [Dichelobacter nodosus
VCS1703A]
gi|146233020|gb|ABQ13998.1| PpiC-type peptidylprolyl cis-trans isomerase [Dichelobacter nodosus
VCS1703A]
Length = 421
Score = 46.4 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 16/213 (7%), Positives = 55/213 (25%), Gaps = 23/213 (10%)
Query: 20 VLFVPFLIWGLSDALFSVSG----SSTVV-----SVGRQKVPFSSFINSWKQELGMISQK 70
++ + F + L V+ V + + +Q+ +
Sbjct: 3 LIILFFALMLLPSWALDFGPKPMPQQNVLDEIGLVVNEEAISRKRLNELLEQQRARAPR- 61
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
++++ + ++ + Q + L + IA H
Sbjct: 62 ----------DQPYSEEQLQEQIIMQILMAQMAKSAHLTVKDAEIDHAIATVAAQHKISV 111
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
++ G+++ EY +++ + ++ +G + + +
Sbjct: 112 A---QLYQQIARTMGLSQTEYRQQIAQLMLQDELKQRLIGRDINISEQQINNQITQIIRQ 168
Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
L + +P + +
Sbjct: 169 RGTKFHLQDLLLPLPKKELPEQAYRQQMQTISQ 201
>gi|257784781|ref|YP_003179998.1| hypothetical protein Apar_0978 [Atopobium parvulum DSM 20469]
gi|257473288|gb|ACV51407.1| hypothetical protein Apar_0978 [Atopobium parvulum DSM 20469]
Length = 282
Score = 46.4 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 20/175 (11%), Positives = 46/175 (26%), Gaps = 22/175 (12%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGR-QKVPFSSFINSWKQE 63
+RK KIF+ + V G++ F + G S+ +
Sbjct: 6 VRKH-----FKIFIGLGAVVLFALGVAIGRFLLGGGGATGSLNGRTTLSEGELNTPVASY 60
Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDN--------------LVSGATLDQFIEDIGLE 109
+ + V E + + + A + + G+
Sbjct: 61 --TYNGQTKEVTTREVIEATSGLDAAKQSDGTYAVPPADKIIGYIRNALVVAEAKSKGIT 118
Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+ + + S +A++ IN+ + Y + T +
Sbjct: 119 VTDDEINEYMQNNFKTTDISKVASAYKLSEDVAKKLINDAVIMKKYRDSVLTTTL 173
>gi|126297597|ref|XP_001364810.1| PREDICTED: similar to hCG29188 [Monodelphis domestica]
Length = 1322
Score = 46.4 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 38/473 (8%), Positives = 113/473 (23%), Gaps = 7/473 (1%)
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ R N + + P +
Sbjct: 409 EVKRVKFAKDSGSDGHSINSHDSATPSPTPGADNYSAEPVLLPPTSVPFKPGEPAVRTKS 468
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
+ P+ + I + + I L + + ++
Sbjct: 469 NSISEQLSNPDVTKAKLISRMAKMGQPMLPIVPPHLDSNDPEIEDLNALRGAGQHMMTAS 528
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
+ ++ + ++ + L+ +
Sbjct: 529 VHSSPEPSHAPQRPARTSPSMQPYAYHQNPTPVTSQLQPVGPMYPGPLSQTPHFQGSADI 588
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
+ ++ S + + K Q S + +E + +
Sbjct: 589 VSFLMTESRQHNTEIRMAVSKVADKMDHLAAKVEELQKHNASNSLLLPSLSVSMETSMIM 648
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ EK+ L + + K I ++ + + + + +A
Sbjct: 649 SNIQRILQENEKLKQEVLEKNNRIE-EQNDKITDLIERNQRYVEQSNLMMEKRNSTLQIA 707
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ + ++ +L V+ V V ++ + + E+ KE
Sbjct: 708 TENTQARVLHAEQEKAKVTEELASVIAQVSNLQLKVTAQQKKETDLQMQLTEHLKEADLR 767
Query: 518 RDIGKNLGASL----LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
L A + T+ Q+ K ++ + E + L +
Sbjct: 768 EAQISKLQAHITELQETSEQVQSKLKAEKHSRKQLELKLTALEEEQTDLQAEKESLEKTL 827
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + ++ I + ++ ++L + L Q V+ + ++
Sbjct: 828 SERKKKSAQERSQAEEEIGEIQKLHQEELEK--LRQLLKQAQVSTNQAAAEQV 878
>gi|110680309|ref|YP_683316.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter
denitrificans OCh 114]
gi|109456425|gb|ABG32630.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter
denitrificans OCh 114]
Length = 406
Score = 46.4 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 17/130 (13%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
S + V + + +S + +++ L++
Sbjct: 30 SPAIQVNDAVITEFEIEQ-----RQQFLTLLNAPGSS--------RQAVVEELINERLRA 76
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q + + GLE + + D F + L GI + + D +S
Sbjct: 77 QAVANAGLELSDAALQEGMTE----FAGRVNLGVDEFKTVLEENGIAAETFEDFVRVGVS 132
Query: 161 RTDVVGMFVG 170
D + G
Sbjct: 133 WRDFIAARFG 142
>gi|332665904|ref|YP_004448692.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
hydrossis DSM 1100]
gi|332334718|gb|AEE51819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
hydrossis DSM 1100]
Length = 656
Score = 46.4 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 87/674 (12%), Positives = 178/674 (26%), Gaps = 79/674 (11%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+AK L+++ F + S + + +V V S F + S+ G
Sbjct: 1 MAKNLLLLIGCFFSLMVFSQ---AQDKDPVLFTVDGTPVHVSEFKYIY-------SKTNG 50
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ RA ++ LD + +D+ L+ + E+A
Sbjct: 51 KNADFSRAT----LQEYLDLYTKFKLKVKKAKDMKLD-TVQVLQEELAGYRRQLADSYLL 105
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ + E + + + G + + +
Sbjct: 106 NKQ----VTEKLTKELFERSQYDLDISHILFALPAEAKGADTVSTFRQAMEVRARLLKGE 161
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
D+ + + + +N + N P FD + +
Sbjct: 162 DFATIAKQVSADKSAATNGGNIGFVTAMFPNGFYPLESVAYRSSFDQVSMPVRTSVGYHL 221
Query: 253 LQAEYEKNKEKYFSPEI---RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS--- 306
++ ++ RT + + + D + +LKKG F +LA + +
Sbjct: 222 VKVHSKRPARGEVEVAHILLRTEDADAMAVKMQIDTLYAALKKGLNFEELAAKNSQDTRT 281
Query: 307 -LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
+G + + + D+ FS+AK GD++ S G+ I + K
Sbjct: 282 ADKGGYVGFVTINRF-EQAFEDAAFSVAKDGDYSKPFQTSVGWHIIKRISKKEIQPYDQM 340
Query: 366 EVK--KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL------ 417
+ I R A + + +D KR F + + +
Sbjct: 341 RGQLEARIKRDARFEMARKAMVDDIKRETGFKDYPNLLADFATTLNDTFFTFQWRAPQQR 400
Query: 418 ---VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW--------V 466
V F + E + S D V Y+
Sbjct: 401 TGNVLFTMAKKAYTMGDFYQFVENATRQRMRMSGETSLDAAVQNLYEEYVNESCLRYEEQ 460
Query: 467 QIKESIPARDRKLEEVLTDV---------------------KKDWKTVKTAEEVSSKANQ 505
++ + P L E + K +KT+K +A
Sbjct: 461 RLDQKYPEFKALLREYEEGILLFEATRINVWDKASLDTVGLKNYFKTLKGKYRWEERAVT 520
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF--------FGYDGISQVFSGPV 557
V K+ + + T + + + + +
Sbjct: 521 SVFFVDGTSKSVLEPMREYARKHSTEEVLEKFNQSDSIGIRYEEMVLEKGKSPEASDLKE 580
Query: 558 EMVKCFPIE----NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V I Y KV + ++ Y+ L + LK Q
Sbjct: 581 WKVGEITIAKLDRQNNEYSFRKVEKILPPQDKLLNEARGYIIADYQDHLEQQWVNELKKQ 640
Query: 614 YSVTVHDNLIQRYL 627
YS+ V + + +
Sbjct: 641 YSIKVEKAVFESLI 654
>gi|229069842|ref|ZP_04203124.1| Foldase protein prsA 1 [Bacillus cereus F65185]
gi|228713245|gb|EEL65138.1| Foldase protein prsA 1 [Bacillus cereus F65185]
Length = 293
Score = 46.4 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + + + Q +
Sbjct: 133 TDKDVKDNYKPEMKVSHILVKDEKTAKEIKEK-VNNGEDFAALARQYSEDTGSKEQGGEI 191
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KDK +
Sbjct: 192 SGFAPGQTVKEFEEAAYKLDAGQV-SEPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDI 250
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 281
>gi|332665906|ref|YP_004448694.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
hydrossis DSM 1100]
gi|332334720|gb|AEE51821.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haliscomenobacter
hydrossis DSM 1100]
Length = 455
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 33/495 (6%), Positives = 116/495 (23%), Gaps = 77/495 (15%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++F L ++ V ++G + + ++ +++ + V E
Sbjct: 4 LIFAVLLTTTMAATAQRQILDKMVATIGGE-IT---LLSEVEEQYAYTKAQRNGAVPPEA 59
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
+++ ++ L + +E V ++ F
Sbjct: 60 ------RCMLVEQILVNKLLLNQAKLDSIEVKDEEVESQLTARIERILSYMNDDLKQFEE 113
Query: 140 RLARE-GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
+ +++ + L + + + + + R +
Sbjct: 114 YYGQTVNEVREQFREDLRNNLLIERMRAKIMADVSVTPSEVKDFFR--------RIPKDS 165
Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
+ + + V K + + ++++
Sbjct: 166 LPYFSSEVEVGEIVYKVPINKEQKRVTMEK---------------------LEDIRKRIV 204
Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKE 318
+ KE + + + G + LG +
Sbjct: 205 EGKEDFAEL-----------------------------AKKYSDDGSARGGGDLGWAKRG 235
Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
+ ++ ++ + +PVI FG+ + + + + + + +
Sbjct: 236 KYV--TEFEAAAYKLEEMEVSPVIETQFGFHVLQMLGRRGNSIHVRHILIRPEITDEDVD 293
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
+ L + + + G + +
Sbjct: 294 LGQRHMDTVRTLL--IKDSISFSRAVKKYSDKNVQSFNNDGRMVNPTSGNTFFEVGDLDP 351
Query: 439 LLFRVFGKDDPLSKDHTV----ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ + D + V++ L + ++K K
Sbjct: 352 DIYFAIDTMKMNGVSKPIEFRDESGDYFFRLVKLMSRTVPHKANLAQDYAKIQKAAIESK 411
Query: 495 TAEEVSSKANQLVLE 509
E V+ + + +
Sbjct: 412 RNEIVNKWVEERIQK 426
>gi|225075434|ref|ZP_03718633.1| hypothetical protein NEIFLAOT_00439 [Neisseria flavescens
NRL30031/H210]
gi|224953252|gb|EEG34461.1| hypothetical protein NEIFLAOT_00439 [Neisseria flavescens
NRL30031/H210]
Length = 290
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 5/136 (3%)
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
++ D + A + + + + + K G + +
Sbjct: 160 EIVTDSSSNAQKAIADLDAKKSFVSVLNQY-SIDEAAKKAGGIPKAYVPLKDLQESA--- 215
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD 604
+ V P++NG Y VF V + + V + + + + +D
Sbjct: 216 -PPLYAAVKDLKKGAHTKTPLQNGNLYAVFYVNDRRNVTVPSYETAKNEIGSDLQAARVD 274
Query: 605 SVIAYLKSQYSVTVHD 620
+ I L + S+ V+
Sbjct: 275 AAIQSLLKKASIKVNK 290
>gi|218897287|ref|YP_002445698.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus G9842]
gi|228900906|ref|ZP_04065121.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
gi|218542209|gb|ACK94603.1| peptidylprolyl isomerase PrsA3 [Bacillus cereus G9842]
gi|228858832|gb|EEN03277.1| Foldase protein prsA 1 [Bacillus thuringiensis IBL 4222]
Length = 293
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + K + Q +
Sbjct: 133 TEKDVKDNYKPEMKVSHILVKDEKTAKEIKEK-VNNGEDFAALAKQYSEDTGSKEQGGEI 191
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KDK L
Sbjct: 192 SGFAPGQTVKEFEEAAYKLDAGQV-SDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDL 250
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L ++ V++
Sbjct: 251 EQQRLEDTTGKWKQQVVNDLLKDANIKVNNK 281
>gi|183597819|ref|ZP_02959312.1| hypothetical protein PROSTU_01149 [Providencia stuartii ATCC 25827]
gi|188022575|gb|EDU60615.1| hypothetical protein PROSTU_01149 [Providencia stuartii ATCC 25827]
Length = 439
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 43/350 (12%), Positives = 91/350 (26%), Gaps = 53/350 (15%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
S N ++ G + + L +IL+ L++ + Q + +
Sbjct: 39 ESDVQNMLNTVKLN-ARNAGQQIPDDET----LRHQILERLITDNIMLQMANQMQINIPE 93
Query: 113 GRVWGEIARSPL-----FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
V IA F + D R I ++ I R V +
Sbjct: 94 EAVNATIADIARQNGLTFEQMQARLKADGIDMAKYRSEIRKEMLIAEVRNNEVRRRVTIL 153
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+ + QA N S I L ++A++ + ++ K
Sbjct: 154 PQEVESLAKQISSQADYEASVNLSHILIPLPENPTQEQLQKADAIVAKIMDEIKKGTNFG 213
Query: 228 EYKRISYILFDVHEKEKKIEISNDE-----------------------------LQAEYE 258
+ + E L+
Sbjct: 214 KLAIAYSADPQALKGGNMGWSRLQELPVVFAEQLKSAKKGDVVGPIRSGVGYHILRVNEM 273
Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL----------AEEQGKSLS 308
+ K S ++ + D+ K + + A+E +
Sbjct: 274 NSANKTISVTEVKARHILIKSSPIMDDNQARQKLTQITQDIRSGKTTFENAAKEFSEDPG 333
Query: 309 DISLGSFSKEYIP---DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
G +P D + D++ L K G+ + + +FG+ + + +
Sbjct: 334 SALKGGELGWNMPDVYDPAFRDALMRLNK-GEISQPVRSNFGWHLIQLED 382
>gi|158321661|ref|YP_001514168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
oremlandii OhILAs]
gi|158141860|gb|ABW20172.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
oremlandii OhILAs]
Length = 317
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 21/210 (10%), Positives = 60/210 (28%), Gaps = 18/210 (8%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ + + + +L + LI G S + V +G ++V + + L + +
Sbjct: 2 KKKLTILIIAMLTMAILITGCS---KTGLAEGVVAKIGNKEVTEAEYNKLLDYYLSIATT 58
Query: 70 KIGFVVNSERARSVG---------LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + E + L ++LD +V + + + V E
Sbjct: 59 QY--NLTEEILNTDNGSGMTLLDTLKAEVLDIIVLTEIIADKAAENKVTVTEEEVTKEFE 116
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ + + S + + + +++ + K L ++ +
Sbjct: 117 ENHVKVME----SDENYKKLIEENKLDDAFIKEQIRKDLIAYKYNQFYLEKTEINEAAAK 172
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
E + + + V
Sbjct: 173 TFYEENPEGFHNEQVSAKHILVETEETAKE 202
Score = 37.1 bits (83), Expect = 8.3, Method: Composition-based stats.
Identities = 18/179 (10%), Positives = 51/179 (28%), Gaps = 6/179 (3%)
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD--VKKDWKTVKTAEE 498
++ + + +++ E A + E + + E
Sbjct: 136 NKLDDAFIKEQIRKDLIAYKYNQFYLEKTEINEAAAKTFYEENPEGFHNEQVSAKHILVE 195
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPV 557
A +++ + + G +F ++ K + K + F+ V
Sbjct: 196 TEETAKEVIGKL-EAGADFAELAKEYSTEPGAEQTGGNLGYFKKGRMVPEFEKAAFALEV 254
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
+ P++ Y V V + KV + + + + + + + +V
Sbjct: 255 GKI-SEPVKTDFGYHVIVVED-KVDESISFEDAKADIVDYLKRLDYQKHLEEALKKANV 311
>gi|317012021|gb|ADU82629.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori
Lithuania75]
Length = 299
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 55/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
E + R +V + + A+ + + F + + + K
Sbjct: 83 EQAIRTALVENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKVQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQ-----LFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
++ + M+ + L I L+ + + ++
Sbjct: 258 VTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKRAKIVINK 299
>gi|251793857|ref|YP_003008589.1| SurA [Aggregatibacter aphrophilus NJ8700]
gi|247535256|gb|ACS98502.1| SurA [Aggregatibacter aphrophilus NJ8700]
Length = 308
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 37/123 (30%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ ++ Q+ + F D L+ + +Q
Sbjct: 183 QAKAQLEQIRADIIAGKMTFADAALKYSKDYLSGANGGSLGYAFPEMYVGPFNQAIRTTK 242
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ V P + + + +VTN++ G E + K + +D + L+ +
Sbjct: 243 QGVISAPFKTEFGWHILEVTNTRQGDRTEDAYRQKAYEQIVNQQLQDSARDWVQALRKRA 302
Query: 615 SVT 617
+
Sbjct: 303 DIK 305
Score = 43.7 bits (100), Expect = 0.096, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 51/149 (34%), Gaps = 24/149 (16%)
Query: 23 VPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
V F G+ + +V V +V V S ++ ++
Sbjct: 6 VFFSAVGILALVANVQAEEKVVATVNGIPVLESQVQSALNKKTNN--------------- 50
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
+ L+ ++ +DQ +++ G++ ++ +V I N + + L
Sbjct: 51 ----RQAALNKVIDDILVDQAVQESGVKVNNAQVDKIIEGIAA----QNGLTFGQLLDAL 102
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+GI+ + Y + + ++V +
Sbjct: 103 DYQGISYRAYRQQIAQQVMMSEVRNHAIS 131
>gi|109946965|ref|YP_664193.1| peptidyl-prolyl cis-trans isomerase [Helicobacter acinonychis str.
Sheeba]
gi|109714186|emb|CAJ99194.1| peptidyl-prolyl cis-trans isomerase [Helicobacter acinonychis str.
Sheeba]
Length = 298
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 24/247 (9%), Positives = 66/247 (26%), Gaps = 9/247 (3%)
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
A ++ ++ + ++ E + R +V + + A+ + +
Sbjct: 57 AIKQRNPNFDFDKLKEEEKKALVEQAIRTVLVENEAKTEKLDSTPEFKAMIDAVKKQALV 116
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
F + + + K + ++ +E + +
Sbjct: 117 EFWAKKQAEQVKKVKIPEKEMQDFYNANKEQI-----FVKQEAHARHILVKSEDEAKRII 171
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
S Q + + + S N + + D F+
Sbjct: 172 SEIDKQPKTKREAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGN 231
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYS 615
PI+ Y + + + ++ + M+ + L I L+ Q
Sbjct: 232 YTKTPIKTEFGYHIIYLISKDNPVTYTYEQAKPTIKGMLQEKLFQERMNQKIEQLRKQAK 291
Query: 616 VTVHDNL 622
+ ++D L
Sbjct: 292 IVINDKL 298
>gi|196036230|ref|ZP_03103629.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus W]
gi|218902361|ref|YP_002450195.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH820]
gi|228926303|ref|ZP_04089377.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228944873|ref|ZP_04107236.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|195991205|gb|EDX55174.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus W]
gi|218539904|gb|ACK92302.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH820]
gi|228814901|gb|EEM61159.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228833400|gb|EEM78963.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 285
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 26/246 (10%), Positives = 83/246 (33%), Gaps = 20/246 (8%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + I++ + D + K K +K L
Sbjct: 42 DFEKQLKDRYGKDMLYEMIAQDVITKKYKVSDDDVEKEVQKAKSQYGDQFKNVLKNNGLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ L + + E ++V K + K ++A +
Sbjct: 102 DEADFKNQIKFKLSMNKAIKQSVTE---------KDVKDHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ + + + + + + + + P
Sbjct: 153 IKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFHSGAMTPEFETAAYKLKIGQI-SDP 210
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD------LLDSVIAYLKSQYSVTV 618
+++ Y + K+T K ++ D+ + + + + ++ ++ + ++ +
Sbjct: 211 VQSPNGYHIIKLTGKK--DLKPYDEVKNSIRKNLEEERTADPIFGKKLLQSELKKANIKI 268
Query: 619 HDNLIQ 624
+D+ ++
Sbjct: 269 NDSELE 274
>gi|229160220|ref|ZP_04288219.1| Foldase protein prsA 2 [Bacillus cereus R309803]
gi|228623181|gb|EEK80008.1| Foldase protein prsA 2 [Bacillus cereus R309803]
Length = 285
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 30/241 (12%), Positives = 78/241 (32%), Gaps = 16/241 (6%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + +++ + D + K K +K L
Sbjct: 42 DFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDDDVDKELNKVKNQYGDQFKTVLENNRLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ L + + E ++V K D K ++A +
Sbjct: 102 DEADFKNQIKFKLAMNEAVKKSVTE---------KDVKDHYKPDIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ + + + + + + V + P
Sbjct: 153 IKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFASGTMTPEFETAAYKLKVGQISN-P 210
Query: 565 IENGLSYVVFKVTNSKV--GPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHD 620
+++ Y + K+T+ K + KD L + D ++ + ++ ++D
Sbjct: 211 VKSSNGYHIIKLTDKKDLKPYNEVKDSIRKNLEEERIADPTFSQKLLQDELKKANIKIND 270
Query: 621 N 621
+
Sbjct: 271 S 271
>gi|228913840|ref|ZP_04077465.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228845779|gb|EEM90805.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
Length = 285
Score = 46.4 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 26/246 (10%), Positives = 83/246 (33%), Gaps = 20/246 (8%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + I++ + D + K K +K L
Sbjct: 42 DFEKQLKDRYGKDMLYEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ L + + E ++V K + K ++A +
Sbjct: 102 DEADFKNQIKFKLSMNKAIKQSVTE---------KDVKDHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ + + + + + + + + P
Sbjct: 153 IKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFHSGAMTPEFETAAYKLKIGQI-SDP 210
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD------LLDSVIAYLKSQYSVTV 618
+++ Y + K+T K ++ D+ + + + + ++ ++ + ++ +
Sbjct: 211 VQSPNGYHIIKLTGKK--DLKPYDEVKNSIRKNLEEERTADPIFGKKLLQSELKKANIKI 268
Query: 619 HDNLIQ 624
+D+ ++
Sbjct: 269 NDSELE 274
>gi|303239800|ref|ZP_07326324.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
gi|302592737|gb|EFL62461.1| conserved hypothetical protein [Acetivibrio cellulolyticus CD2]
Length = 355
Score = 46.4 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 21/188 (11%), Positives = 49/188 (26%), Gaps = 23/188 (12%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
A I +++L V L+ V+ ++ V ++ +K+ F +
Sbjct: 14 FASILVLLLAVA-------GWLYYVNSTNYVATIKGEKITTDEFNFFLGSTKTEMETNAN 66
Query: 73 FVVNSERARSVGL-------------DKKILDNLVSGATLDQFIEDIGLEADH---GRVW 116
SE A + ++ LD+ ++ GL+ + V
Sbjct: 67 VDKTSETALNEFWNTKVEGVPARDYAKQQALDSAKEFKIQYIKAKEKGLKLEEGDLKDVK 126
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+ + I Y + ++ V + S
Sbjct: 127 STLDNIKSGMSSNYGGDKLGEEEFKKTYNIGYDRYENILKDLMLVYKYVEGELPTFSVSE 186
Query: 177 LLLDQAKR 184
+ +
Sbjct: 187 TEMKDYYK 194
>gi|290474826|ref|YP_003467706.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
maturation of outer membrane proteins [Xenorhabdus
bovienii SS-2004]
gi|289174139|emb|CBJ80926.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
maturation of outer membrane proteins [Xenorhabdus
bovienii SS-2004]
Length = 416
Score = 46.0 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 26/216 (12%), Positives = 59/216 (27%), Gaps = 10/216 (4%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
S + G + E+A L +IL+ L+ + Q + + +
Sbjct: 21 ESDVDEQLQSVKLSAKH-AGQQIPDEKA----LRHQILERLIMDDIILQMAKQMQITIPD 75
Query: 113 GRVWGEIARSPLFH-----GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ IA + + + R I ++ I R V +
Sbjct: 76 QVLDSTIANIAAQNHMGLDELKKNLTAEGLNFNTYRNQIRKEMIIAEVRNNEIRRRVTIL 135
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+ L + + N S I L A + + A++ + + K+
Sbjct: 136 PQEVEALAKNLSSENNQNTELNVSNILIPLRENPSQAQVEKATAIINKILSELKNGADFG 195
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
+ + EL + + + +
Sbjct: 196 KLAITYSGDTQALKGGNMGWRKLQELPSLFAEQLQS 231
Score = 38.3 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 50/199 (25%), Gaps = 8/199 (4%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
G + LF + + + ++I + + ++ +
Sbjct: 211 GNMGWRKLQELPSLFAEQLQSAHKGQIIGPIRSGVGFHILKINDIRGSNMPQVAATEVNA 270
Query: 487 KKDWKT---VKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNENK 542
+ + T ++ S +L E F + T N
Sbjct: 271 RHILLKTSPIMTDDQARSTLMKLREEILSGKTTFNAAAEKYSEDPGTAMRGGELGWNVPS 330
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMN 599
+ + + P+ + + + ++ +KD L
Sbjct: 331 TYAPAFRDALVKLKKGELSQ-PVHSTFGWHLIQLIDTRKVDRTDSAQKDNAYRLLLNRKL 389
Query: 600 KDLLDSVIAYLKSQYSVTV 618
+ + + L++ V V
Sbjct: 390 GEETQNWMQDLRASAYVKV 408
>gi|226309756|ref|YP_002769650.1| hypothetical protein BBR47_01690 [Brevibacillus brevis NBRC 100599]
gi|226092704|dbj|BAH41146.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 300
Score = 46.0 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 12/134 (8%), Positives = 42/134 (31%), Gaps = 23/134 (17%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
VG + + ++ + KQ K++L+++++
Sbjct: 29 SGKLQPAAIVGDKTISNDEYVTALKQ---------------------KFGKQVLNDMINR 67
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYT 156
+ Q + G+ D ++ E+++ +G + + + + G + +
Sbjct: 68 EVVFQEAKRSGITVDPKQLEQELSQIRDSYGSRT--DSEFEAALIKQAGTTVEALKQEIS 125
Query: 157 KMLSRTDVVGMFVG 170
+ + +
Sbjct: 126 YQILLQTLATKDMT 139
>gi|219681515|ref|YP_002467900.1| survival protein SurA precursor [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471196|ref|ZP_05635195.1| survival protein SurA precursor [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|219624358|gb|ACL30513.1| survival protein SurA precursor [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
Length = 430
Score = 46.0 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 33/419 (7%), Positives = 107/419 (25%), Gaps = 16/419 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + + S + L + + + +S L +K+L+ L+ + +
Sbjct: 26 DNITAIVNDEIILNSD----VNEILVFLKKSKKKFIIP--LKSDFLKEKVLEKLIVDSLI 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + ++ I L L R N Y + K+
Sbjct: 80 LQEANSKNINITKEQIDTVIKNIALKKHISVN---HFKKQILLRNIKNPSYYDNFIKKIE 136
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + + + +Q F+ D ++ I PS + +
Sbjct: 137 ILLKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFKKINLSYILLPSFKQDSDNAVR 196
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ ++ + + + + + +
Sbjct: 197 NRTKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMFWKPLLDIQNSFFKTLNIFKKG 256
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
Q K + ++ +++ + + ++ ++ +
Sbjct: 257 QILGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIKPSVILTNTEAKKKIFN----- 311
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
I+ + I + + + + K ++ + + +
Sbjct: 312 --IYENIKKGIYTFDDAVKNLSDDYYSSNKKGDLGWISKESLGFDLNKKFLILDKNEISE 369
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ +D VD K K + + ++ + + +D + + +
Sbjct: 370 PVKSNWGWHIFKILDRRQVDAFYKLKKNQAFNIVLNQKIISEKNHWIEDLKNTAYIEII 428
>gi|296332416|ref|ZP_06874877.1| molecular chaperone lipoprotein [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673697|ref|YP_003865369.1| molecular chaperone lipoprotein [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150334|gb|EFG91222.1| molecular chaperone lipoprotein [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411941|gb|ADM37060.1| molecular chaperone lipoprotein [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 284
Score = 46.0 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 24/168 (14%), Positives = 45/168 (26%), Gaps = 30/168 (17%)
Query: 483 LTDVKKDWKTVKTAE---------------------------EVSSKANQLVLEYSKEGK 515
VK + T K A+ K + V + K+G+
Sbjct: 102 KEQVKYELLTQKAAKDNIKVTDADTKEYWEGLKDKIRASHILVADKKTAEEVEKKLKKGE 161
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
F D+ K + + + F V P++ Y + K
Sbjct: 162 KFEDLAKEYSTDNSASQGGDLGWFAKDGMVAEFSKAAFKLKTGEV-SDPVKTQYGYHIIK 220
Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDN 621
T + K + S + + D + + + + V V D
Sbjct: 221 KTEERGKYDDMKKELKSEVLEQKLNDTTAVQEAVQKVMKKADVEVKDK 268
>gi|254487361|ref|ZP_05100566.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter sp.
GAI101]
gi|214044230|gb|EEB84868.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Roseobacter sp.
GAI101]
Length = 411
Score = 46.0 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 15/153 (9%), Positives = 42/153 (27%), Gaps = 20/153 (13%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+ ++ + + + L + + + V V V Q +
Sbjct: 16 IGLIGLALM---TATPLAAQNLFAPVARVNESVVTEFEVQQ-----RQRFLQLLNAP--- 64
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
L +L+ ++ + + G+ + + S F
Sbjct: 65 -----GATRDGALTSLIDERLRNEAVAEAGIALTPEGIEDSLTEFAA----RANLSTAEF 115
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
S L R G+ ++ + D + +++
Sbjct: 116 TSALERSGVAKETFRDFVVNSVGWRELIRARYN 148
Score = 37.9 bits (85), Expect = 5.3, Method: Composition-based stats.
Identities = 16/160 (10%), Positives = 44/160 (27%), Gaps = 9/160 (5%)
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ Q+++ + + +E ++A L +
Sbjct: 255 PNAVALFQLRDIQETGAATPVYSAIEYAAYYIAGGRSEAALAQAQTLRGRVDTC-NDLYG 313
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-ENGLSYVVFKVTN 578
+ K A + + R+ D ++ V NG + + + +
Sbjct: 314 VAKGQPAEV-----LERVTKAPAEIPQDIAIELSKLDPGEVSTALTRANGQTLMFLMMCD 368
Query: 579 SKVGPVQEKDK--FISYLTQMMNKDLLDSVIAYLKSQYSV 616
Q+ + + L Q D ++ L++ +
Sbjct: 369 RTSASNQDTSRTDVANALRQERLSGYADQLLEQLRADARI 408
>gi|329850880|ref|ZP_08265725.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19]
gi|328841195|gb|EGF90766.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19]
Length = 445
Score = 46.0 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 10/134 (7%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
++SV + + G V E + ++ ++ LV
Sbjct: 56 SEGMLISVNDDMITSYDLKQRMLLLIV----TSGVQVTQENYAAFQ--QQAINGLVDERL 109
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q ++ ++ D + E+ R + + + ++ L + GI
Sbjct: 110 QMQELDHWKVKVDDADINEELERMAS----QSGLTGEQLLTELKKVGIEPATLKSQIRAE 165
Query: 159 LSRTDVVGMFVGGM 172
+ +VG
Sbjct: 166 TGWSRLVGGRYQSN 179
>gi|223940711|ref|ZP_03632550.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
gi|223890638|gb|EEF57160.1| PpiC-type peptidyl-prolyl cis-trans isomerase [bacterium Ellin514]
Length = 373
Score = 46.0 bits (106), Expect = 0.017, Method: Composition-based stats.
Identities = 39/316 (12%), Positives = 96/316 (30%), Gaps = 22/316 (6%)
Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
+PD + K+ + G A I P+ Q+ D Q+++ K
Sbjct: 46 LPDQVIVKGKGFELKQSQLDEAVSGVKANASARGQEIPPAQLEMIQKKLLDRLIQIQLFK 105
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFA-----GKDVKGKEVAAIP 434
A + + +E + + + E +++ L + + ++ A+
Sbjct: 106 AKATDADKAEGKKEGDNRFEMIKKRAPSEDMLAKQLKTMGLTVESLHSRLIEEATAEAVL 165
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
+ + K P+ + + + E+ D
Sbjct: 166 KSKVKISDDQVKKFYNDNPKDFEEPEQVRASHIL--ISTSDQKTGSEMSED--------- 214
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
++ K + +L+ +K G++F + K + ++ + + FS
Sbjct: 215 -QKKAKKKQAEDLLKRAKAGEDFGKLAKEFSEDPGSKDKGGEYIFPRGKMVPEFEAAAFS 273
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYL 610
V Y + K++ + +D YL + + +L L
Sbjct: 274 LQTNQVSDIVT-TPFGYHIIKLSEKIPPHKVELAKVQDDIKGYLEKQEMEKVLPDFYKEL 332
Query: 611 KSQYSVTVHDNLIQRY 626
K + +V + D ++
Sbjct: 333 KKESNVQILDEKLKAL 348
>gi|325288391|ref|YP_004264572.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobotulus
glycolicus DSM 8271]
gi|324963792|gb|ADY54571.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Syntrophobotulus
glycolicus DSM 8271]
Length = 311
Score = 46.0 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 38/295 (12%), Positives = 84/295 (28%), Gaps = 16/295 (5%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER--ARSVGLDKKILDNLVS 95
S V V + + F N + + G +E A + ++L +
Sbjct: 25 SNVDYVAKVNDELIAKKDFDNKLNDIKTYVQSQ-GVDFTTEEGKAYLQNIQGQLLSMSIQ 83
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
A + Q ++ I + + ++ + + L ++G+ E++ + +
Sbjct: 84 DAIIRQEVKKNN-------WDTNIPQITEKVNQISQKNGGDLATYLKQQGLTEEDLKNTF 136
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ R E +I++
Sbjct: 137 AFAYYTGKDATVSEEETRQYFEDHFDQYGGQMEQVKARHILVGTEDEAKDIIRQIQAGAD 196
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKK------IEISNDELQAEYEKNKEKYFSPEI 269
+ K+ I + K + ++ EL K K Y ++
Sbjct: 197 FAALAKEKSTDGSKDNGGEIDYFTRGKMVEEFEKAAFDMKIGELTTTPVKTKYGYHVIQV 256
Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
+Q V P+ ++ E Q+ Q AE L+ + ++K Y P
Sbjct: 257 LDHKQTVKPDYEKVKEKVQADALENAQNQKAESYYMKLAQEAKIEYAKGYEPTTE 311
Score = 45.6 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 23/222 (10%), Positives = 58/222 (26%), Gaps = 16/222 (7%)
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALP 459
+ ++ + + + E+ L F KD TV+
Sbjct: 92 KKNNWDTNIPQITEKVNQISQKNGGDLATYLKQQGLTEEDLKNTFAFAYYTGKDATVSEE 151
Query: 460 DGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + ++ ++E+V + + + + G +F
Sbjct: 152 ETRQYF---EDHFDQYGGQMEQVKARHILVGTEDEAKDIIRQ---------IQAGADFAA 199
Query: 520 IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN- 578
+ K N + F + + P++ Y V +V +
Sbjct: 200 LAKEKSTDGSKDNGGEIDYFTRGKMVEEFEKAAFDMKIGELTTTPVKTKYGYHVIQVLDH 259
Query: 579 ---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
K + K+K + + +S L + +
Sbjct: 260 KQTVKPDYEKVKEKVQADALENAQNQKAESYYMKLAQEAKIE 301
>gi|254464586|ref|ZP_05077997.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales
bacterium Y4I]
gi|206685494|gb|EDZ45976.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales
bacterium Y4I]
Length = 305
Score = 46.0 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 11/123 (8%), Positives = 32/123 (26%), Gaps = 17/123 (13%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
++V Q + + + + L++
Sbjct: 41 PAITVNDQVITRYELEQ-----RARFQAALRVPGDPLETAR--------EELINDRLKLM 87
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
++ G+E + + S + F++ L ++G+ + D L
Sbjct: 88 VLKQAGIELSEEDITAGMEEL----AGRANLSLNEFLTVLQQQGVAPQTLRDFTKVGLGW 143
Query: 162 TDV 164
+
Sbjct: 144 REY 146
>gi|167754419|ref|ZP_02426546.1| hypothetical protein ALIPUT_02713 [Alistipes putredinis DSM 17216]
gi|167659044|gb|EDS03174.1| hypothetical protein ALIPUT_02713 [Alistipes putredinis DSM 17216]
Length = 469
Score = 46.0 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 19/248 (7%), Positives = 59/248 (23%), Gaps = 11/248 (4%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K L + I+ + V V VG + +S + EL ++ G+
Sbjct: 3 KKILFCAALVLAIFAGAAQKRQVMLDRVVAVVGGSSILWSEVD-EYAGELVEQRRQQGYT 61
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ + + L+ L+ L ++ + + + H +
Sbjct: 62 SDRDP------HDEALEQLLMQKLLFNQALIDSVDVSYSGIAQRVEA----HLQALIDDA 111
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ ++ + + + + ++ Y++ D
Sbjct: 112 GSIAALETKQHMPIFNVREMLRQRYEEQAYAQAMQSSVVGKIKVIPGEVERYYKKTDPDS 171
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
+ + ++ +RI + + +
Sbjct: 172 LPTIPEQYVYAQITRFPASIKEAKQRTKERLLDMRERIIKGQTRFDIMARMYSMDGSAIS 231
Query: 255 AEYEKNKE 262
+
Sbjct: 232 GGELDPQP 239
>gi|229056898|ref|ZP_04196294.1| Foldase protein prsA 2 [Bacillus cereus AH603]
gi|228720426|gb|EEL71999.1| Foldase protein prsA 2 [Bacillus cereus AH603]
Length = 285
Score = 46.0 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 20/219 (9%), Positives = 65/219 (29%), Gaps = 11/219 (5%)
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ ++ K + + F ++ +
Sbjct: 57 YEMVAQDVITKKYKVSDDAVDKEVEKAKDQYGEQFKATLENNRLKDEEDFKNQIKFKLAL 116
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ ++V K + K ++A ++ + G +F ++ K L
Sbjct: 117 NEAIKQSVTEKDVKDHYKPEIKASHILVSNENEAKEIKKKLDT-GTSFEELAKQESQDLA 175
Query: 530 TTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + + + + + P+++ Y + K+T+ K +Q D
Sbjct: 176 SKDNGGDLGYFGAGKMTPEFEKAAYKLKPGQISN-PVKSPNGYHIIKLTDKK--DLQPYD 232
Query: 589 KFISYLTQMMNKDLL------DSVIAYLKSQYSVTVHDN 621
K + + + ++ L ++ + + ++D+
Sbjct: 233 KVKDSIRKDLEEERLADPSFGQKLLQDELKKADIKINDS 271
>gi|254448730|ref|ZP_05062188.1| foldase protein PrsA, putative [gamma proteobacterium HTCC5015]
gi|198261738|gb|EDY86025.1| foldase protein PrsA, putative [gamma proteobacterium HTCC5015]
Length = 306
Score = 46.0 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 42/122 (34%), Gaps = 4/122 (3%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+A L+ + +G +F + + ++ + + + +
Sbjct: 160 EEEAKALIKQLD-DGADFATLAEENSVGPSASSGGSLGWATADTYVEAFATALEQLEDGS 218
Query: 560 VKCFPIENGLSYVVFKVTNSK---VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
P+E + V + S+ D S L +++ + + S + L+++ +V
Sbjct: 219 YTAAPVETQFGWHVILRSESRESQAPEAPAFDMVKSQLEKVVMQKRMQSYMENLRNKANV 278
Query: 617 TV 618
+
Sbjct: 279 VI 280
>gi|301155190|emb|CBW14654.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
Length = 310
Score = 46.0 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 44/149 (29%), Gaps = 24/149 (16%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
+ F + GL + V +V + S
Sbjct: 9 LLFAMIGLFTFSQVQAEERVVATVNGTPILQSQVNAVMG--------------------K 48
Query: 83 VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
G + LD ++ ++ I++ G++ + V + N ++ F+ L
Sbjct: 49 KGSQRAALDKIIDDMLTEKAIKESGVKVNQAEVNRIVEDIAA----KNGLTYGQFLDALD 104
Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGG 171
+GI+ + ++ + V +
Sbjct: 105 YQGISLNAFKQQISRQMLMAGVRNHAIQN 133
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 11/123 (8%), Positives = 36/123 (29%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ ++ ++ E F D L+ + +++
Sbjct: 184 QAKAELERIRSEIISGKMTFADAALKYSKDYLSGANGGSLGYAFPEAYVGPFAKMVETTP 243
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ P ++ + + +VT ++ G E + K + ++ + L+
Sbjct: 244 QGTISAPFKSEFGWHILEVTGTRDGDKTEDAYRQKAYEQIVNSQLQEATKDWVKALRKNA 303
Query: 615 SVT 617
+
Sbjct: 304 DIQ 306
>gi|148555082|ref|YP_001262664.1| hypothetical protein Swit_2167 [Sphingomonas wittichii RW1]
gi|148500272|gb|ABQ68526.1| hypothetical protein Swit_2167 [Sphingomonas wittichii RW1]
Length = 288
Score = 46.0 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 29/113 (25%), Gaps = 16/113 (14%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLI-WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
IR +R ++ + + ++ G V V +
Sbjct: 3 IR--TRGGISACLVAGAGLGLILLAGCG----KTPKGQVVAIVNGNDISMQQL------- 49
Query: 64 LGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ + + E L K IL ++ Q + L+ +
Sbjct: 50 --SVEAQDLPLPIPETIDRRALSKAILQAVIDRELEVQAAREQRLDKTPQFLA 100
>gi|30020404|ref|NP_832035.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579]
gi|46396824|sp|Q81DT1|PRSA3_BACCR RecName: Full=Foldase protein prsA 3; Flags: Precursor
gi|29895955|gb|AAP09236.1| Protein export protein prsA precursor [Bacillus cereus ATCC 14579]
Length = 283
Score = 46.0 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + + Q +
Sbjct: 123 TDKDVKNNYKPEMKVSHILVKDEKTAKEIKEK-VNNGEDFAALANQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KDK +
Sbjct: 182 SGFAPGQTVKEFEEAAYKLDAGQV-SDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDI 240
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 241 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 271
>gi|319407065|emb|CBI80702.1| Peptidyl-prolyl cis-trans isomerase [Bartonella sp. 1-1C]
Length = 319
Score = 46.0 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 16/169 (9%), Positives = 37/169 (21%), Gaps = 17/169 (10%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+S VV+V + Q L + ++L+
Sbjct: 36 TSVVVTVNGNAITNYDIQRRIAFLKLQQKQ-------------GNLATQAKNDLIDEVLK 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ I+ +E V N + D L + + + + + +
Sbjct: 83 NNEIKRRNIEVSKDEVENAFENFAA----QNNMTVDQLNQMLTQTDVTVEHFKAYIWGQM 138
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+V + ++R P
Sbjct: 139 GWGRLVNARYQAEGGVITEQEASQRILKNGGVKPSTNEYTLQQIIFVIP 187
>gi|150397715|ref|YP_001328182.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
medicae WSM419]
gi|150029230|gb|ABR61347.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
medicae WSM419]
Length = 284
Score = 46.0 bits (106), Expect = 0.018, Method: Composition-based stats.
Identities = 27/169 (15%), Positives = 62/169 (36%), Gaps = 4/169 (2%)
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+K ++ +E++A Y+K E ++ + EA + L GK F +
Sbjct: 107 YFKKHVIDAVTPEEVKARYDKEIAAIPPQEEVKARHILVKTEDEAKAVIKELDAGKNFAE 166
Query: 299 LAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
LA+ + + LG F+K + + F+L K + FG+ + V +
Sbjct: 167 LAKAKSTDPNKDEGGDLGYFTKGRMV-PEFETAAFALEKGAYTKTPVKTQFGFHVILVED 225
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+P + ++V+ + + + E + + ++
Sbjct: 226 KRPQAPPTLEQVEPQVRQLVMRDRYLELLNSAKESTAVEISDPALKKAY 274
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 25/101 (24%), Gaps = 11/101 (10%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + VG Q++ S + + + L
Sbjct: 19 GVARAEGTDPVIAKVGDQEIRQSELDLAVTSLDPQLQRMP----------DEQKRAAALS 68
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
++ L + E GL+ + IA + F
Sbjct: 69 AVIDVKLLLKDAEKEGLQ-NDETFKQRIAFLTERELHNAYF 108
>gi|84490194|ref|YP_448426.1| glutamyl-tRNA(Gln) amidotransferase subunit E [Methanosphaera
stadtmanae DSM 3091]
gi|84373513|gb|ABC57783.1| GatE [Methanosphaera stadtmanae DSM 3091]
Length = 632
Score = 46.0 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 32/300 (10%), Positives = 77/300 (25%), Gaps = 19/300 (6%)
Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
+I G I + K + A + +
Sbjct: 310 AIKLRKFNGLIGREIQPGKRLGTEFSEHGKKMGVSGLFHTDELPAYGIVQEEVDTLRDIL 369
Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
++ L + + I G + + + L
Sbjct: 370 ELDEDDAFILVAEEKTKAHNALLEIIKRAKQSLEGVPEETRRAQDDGNTQYLRPLPTASR 429
Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK--TVKTAEEVSSKANQ 505
+ D + + ++K+ ++K++K + V
Sbjct: 430 MYVETDIPTEIIEKE----RVKKIASNLPELPVVKKERIEKEYKLSEDLAKQLVQRNRAD 485
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
L E KE + + + T + R + D + +VFS V
Sbjct: 486 LFEEIKKELPSMDSVKIASDI-VYTIKDLKRDGYDITKLTKDALVEVFSLVDNDVIPAA- 543
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
++ V N +D + + ++ D++ I + + + N+I++
Sbjct: 544 --ETEVILKDVCNDISP----RDSVKNNNLEKLSDDIIVDTIKEI-----IEENKNMIEQ 592
>gi|86138690|ref|ZP_01057263.1| PPIC-type PPIASE domain protein [Roseobacter sp. MED193]
gi|85824750|gb|EAQ44952.1| PPIC-type PPIASE domain protein [Roseobacter sp. MED193]
Length = 396
Score = 46.0 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 14/145 (9%), Positives = 41/145 (28%), Gaps = 17/145 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + F + + L + S V+V + + + + + + E
Sbjct: 1 MTLGFALSTTAVPLAAQGLFSPAVTVDNAAITYYEL-----NQRALFMGVLRTPGDPEVM 55
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L+ + +G+ + + S + F++
Sbjct: 56 AR--------QELIKDRLKLAELAKVGISPSEEEITAGMTELAS----RANLSLNEFLTV 103
Query: 141 LAREGINEKEYIDHYTKMLSRTDVV 165
L + GI+ + D + + +
Sbjct: 104 LKQNGIDPETVRDFTKVGIGWREYI 128
Score = 39.1 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 22/277 (7%), Positives = 68/277 (24%), Gaps = 12/277 (4%)
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
++ + + + + +++ +++E
Sbjct: 124 WREYIGARFLSRARPTEAEIDRAMGQAGSGGVQVLLSELIVPINEQNAQQVEALTDQVGQ 183
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + + + L V DP + L
Sbjct: 184 LTSFAAFSSAATQYSASDSRNNGGRLP--WMNLTKLPPQLQPVVLALDPGEITEPLPLQ- 240
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
G+ Q++ + + + + E + ++ + I
Sbjct: 241 GAVAMFQMRGVREVTGSRQRYSAIEYASYYIPGGRSAEALALGQEIANRIDTC-DDLYGI 299
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK-CFPIENGLSYVVFKVTNS 579
K+ ++ ++R D ++ G + ++ +
Sbjct: 300 AKDQDPAV-----LDRQSLVPAEIPQDIAIELAKLDPNETSLTLTRNQGQTLMLLMLCGR 354
Query: 580 KV--GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
G + ++ + LTQ + L S I L++
Sbjct: 355 TAELGEGESRETVANALTQQRLESLSSSFIEQLRADA 391
>gi|283779709|ref|YP_003370464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
DSM 6068]
gi|283438162|gb|ADB16604.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pirellula staleyi
DSM 6068]
Length = 490
Score = 46.0 bits (106), Expect = 0.019, Method: Composition-based stats.
Identities = 45/381 (11%), Positives = 101/381 (26%), Gaps = 31/381 (8%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE--RARSVGLDKKILDNLVSGA 97
S V VG Q V Q +G + E + K +L ++
Sbjct: 132 SQIVARVGNQFVLAGDVDAIVNQMIGPALARAKSDQEREAIESSRANASKMVLQRMIDMK 191
Query: 98 TLDQFIEDIGL--EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
L E + A ++ + ++ + E + +
Sbjct: 192 VLYGDFER-NIEKNAGRDKLDEIRKNIDRRMRDQFEKELASMREKVRKAKPAELQAMLAR 250
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ ++ +L L K ++ Y + +A+
Sbjct: 251 DPQMPVVAMLMEEHQIENLGDLDLLLRKYGSSLEKTQRYYRESTLGRSQVAE-------- 302
Query: 216 WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
+ + E + +A +E K+ R
Sbjct: 303 ----------NVREIPEVTHKAMLDYYQSHAEDFALQARARFEMMSVKFVGFPTR----- 347
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI--PDVSLADSIFSLA 333
+ + + G F +A++ + S G F + D
Sbjct: 348 -QAAYQTIGQMGNEVFYGAPFESVAKKYSQDPSASRGGYFDWTQQGALSTEVLDRAVFSL 406
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
+ G + ++ GY I V + + +V F+ + I + + E + ++++
Sbjct: 407 EPGKLSQILEDERGYYIVRVIEREEAGSVPFEVAQTKIKDAIETQYREENYRNYLTKVKQ 466
Query: 394 FLALGTSMDEISRREKIVSID 414
+ T DE + R
Sbjct: 467 QTTIWTIYDETAGRGSAAPGT 487
Score = 41.0 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 22/258 (8%), Positives = 66/258 (25%), Gaps = 12/258 (4%)
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
+ ++ ++ + + + + E+ +L +D +
Sbjct: 219 RRMRDQFEKELASMREKVRKAKPAELQAMLARDPQMPVVAMLMEEHQIENLGDLDLLLRK 278
Query: 425 VKGKEVAAIPYKEQ-LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
Y + L R ++ Y ++ + E +
Sbjct: 279 YGSSLEKTQRYYRESTLGRSQVAENVREIPEVTHKAMLDYYQSHAEDFALQARARFEMMS 338
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
+ + N++ G F + K + +
Sbjct: 339 VKFVGFPTRQAAYQTIGQMGNEVFY-----GAPFESVAKKYSQDPSASRGGYFDWTQQGA 393
Query: 544 FGYDGIS-QVFSGPVEMVKCFPIENGLSYVVFKVTNSK----VGPVQEKDKFISYLTQMM 598
+ + VFS + +E+ Y + +V + V + K +
Sbjct: 394 LSTEVLDRAVFSLEPGKLSQI-LEDERGYYIVRVIEREEAGSVPFEVAQTKIKDAIETQY 452
Query: 599 NKDLLDSVIAYLKSQYSV 616
++ + + +K Q ++
Sbjct: 453 REENYRNYLTKVKQQTTI 470
>gi|229127713|ref|ZP_04256702.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
gi|228655790|gb|EEL11639.1| Foldase protein prsA 1 [Bacillus cereus BDRD-Cer4]
Length = 293
Score = 46.0 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + + Q +
Sbjct: 133 TDKDVKNNYKPEMKVSHILVKDEKTAKEIKEK-VNNGEDFAALANQYSEDTGSKEQGGEI 191
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + KDK +
Sbjct: 192 SGFAPGQTVKEFEEAAYKLDAGQV-SDPVKTTYGYHIIKVTDKKELKPFDEVKDKIRKDI 250
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTVHDN 621
Q +D V+ L + V++
Sbjct: 251 EQQRLQDTTGKWKQQVVNDLLKDADIKVNNK 281
>gi|56694986|ref|YP_165332.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Ruegeria pomeroyi DSS-3]
gi|56676723|gb|AAV93389.1| PPIC-type PPIASE domain protein [Ruegeria pomeroyi DSS-3]
Length = 276
Score = 46.0 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 38/132 (28%), Gaps = 7/132 (5%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+ V E G +F K N + V + V
Sbjct: 141 EDEAKAVKELLDNGADFAATAKEKSTGPSGPNGGALGWFGAGAMVPEFEQAVVALNAGQV 200
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT--- 617
P++ + V + + + D+ L + +D +++ +A L +
Sbjct: 201 -SDPVQTQFGWHVIILNDKRKSEAPALDEVRDELAGRIQQDAIEARLAELTKDSEIEKPE 259
Query: 618 ---VHDNLIQRY 626
V ++++
Sbjct: 260 LTGVEPAVLRQL 271
>gi|163939063|ref|YP_001643947.1| peptidylprolyl isomerase [Bacillus weihenstephanensis KBAB4]
gi|229166104|ref|ZP_04293865.1| Foldase protein prsA 2 [Bacillus cereus AH621]
gi|163861260|gb|ABY42319.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
weihenstephanensis KBAB4]
gi|228617326|gb|EEK74390.1| Foldase protein prsA 2 [Bacillus cereus AH621]
Length = 285
Score = 46.0 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 20/219 (9%), Positives = 65/219 (29%), Gaps = 11/219 (5%)
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ ++ K + + F ++ +
Sbjct: 57 YEMVAQDVITKKYKVSDDAVDKEVEKAKDQYGEQFKATLENNRLKDEEDFKNQIKFKLAL 116
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ ++V K + K ++A ++ + G +F ++ K L
Sbjct: 117 NEAIKQSVTEKDVKDHYKPEIKASHILVSNENEAKEIKKKLDT-GTSFEELAKQESQDLA 175
Query: 530 TTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + + + + + P+++ Y + K+T+ K +Q D
Sbjct: 176 SKDNGGDLGYFGAGKMTPEFEKAAYKLKPGQISN-PVKSPNGYHIIKLTDKK--DLQPYD 232
Query: 589 KFISYLTQMMNKDLL------DSVIAYLKSQYSVTVHDN 621
K + + + ++ L ++ + + ++D+
Sbjct: 233 KVKDSIRKDLEEERLADPSFGQKLLQDELKKADIKINDS 271
>gi|126732888|ref|ZP_01748679.1| PPIC-type PPIASE domain protein [Sagittula stellata E-37]
gi|126706664|gb|EBA05738.1| PPIC-type PPIASE domain protein [Sagittula stellata E-37]
Length = 329
Score = 46.0 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 1/117 (0%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+A + VL K G +F + + N + V S V
Sbjct: 194 KEAAEEVLAEVKGGADFATVAREKSTGPSGPNGGSLGWFGAGMMVEPFQVAVESLAPGDV 253
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P+E + V K+ ++ + + + Q + +D ++ I L Q +T
Sbjct: 254 -TGPVETQFGWHVIKLNETRTQEAPPLEAVRAEIVQKIQQDKVEEHIDSLMRQMDIT 309
>gi|313672046|ref|YP_004050157.1| ppic-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
nitroreducens DSM 19672]
gi|312938802|gb|ADR17994.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Calditerrivibrio
nitroreducens DSM 19672]
Length = 345
Score = 46.0 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 21/189 (11%), Positives = 54/189 (28%), Gaps = 11/189 (5%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ + ++ F S +F+ VV +G+ K I EL
Sbjct: 35 NVKNMKKYLICMLCVFIFGACEKSRDIFTSRNEKPVVVIGKDKYYQKDIIEFIYFEL--- 91
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG---EIARSPL 124
++ + K+I++ + L + + D + ++ +
Sbjct: 92 -----PDIDPSTLKDKDFKKEIINEFIKHKLLLMEAKKAKVTVDKKALKDIASKLTTNNA 146
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
D KF + LA++ + +K + F+ +
Sbjct: 147 PKVIDEKFEKLMEEKLLAQKFLEDKIKSEIKISEEELRAYYEEFIKTKQSKVYYHIYQIV 206
Query: 185 FYFENRSVD 193
+++ +
Sbjct: 207 NEDKHKIEE 215
>gi|241759275|ref|ZP_04757381.1| conserved hypothetical protein [Neisseria flavescens SK114]
gi|241320411|gb|EER56708.1| conserved hypothetical protein [Neisseria flavescens SK114]
Length = 289
Score = 46.0 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 53/173 (30%), Gaps = 17/173 (9%)
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVS-----SKANQLVLEYSKEGK 515
G I P +++ ++ D +K + + S A + + + +
Sbjct: 121 GQAFAAHIVRQYPVQEKDVKAAYNDFSNFYKGTQEVQLGEIVTDSSNAQKAIADLDAKKS 180
Query: 516 --------NFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
+ + K G + + + V P++N
Sbjct: 181 FVSVLNQYSIDEAAKKAGGIPKAYIPLKDLQESA----PPLYAAVKDLKKGAHTKTPLQN 236
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
G Y VF V + + V + + + + +D+ I L + S+ V+
Sbjct: 237 GNLYAVFYVNDRRNVTVPSYEAAKNEIGSDLQAARVDAAIQSLLKKASIKVNK 289
>gi|301165392|emb|CBW24963.1| putative chaperone SurA precursor (peptidyl-prolyl cis-trans
isomerase) [Bacteriovorax marinus SJ]
Length = 303
Score = 46.0 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 43/150 (28%), Gaps = 17/150 (11%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+ +++F+ F + T + S +
Sbjct: 4 LIFLIIFLTF------SQTHAKLLDKTAAVFNDTVITLSQIERIQNNIASR------RNI 51
Query: 76 NSERARSVGLDK-KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ + +IL+ ++ + + + +IG + +V EI K S
Sbjct: 52 SPLIYKKQKYTNSEILELMIERLLIREKLSEIGYIRNDEQVEAEINNIE----KRLGLSR 107
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+S L ++ EY + + +
Sbjct: 108 SQLLSFLKSNNMSFDEYFEIIRETIEFNIF 137
>gi|300724849|ref|YP_003714174.1| peptidyl-prolyl cis/trans isomerase [Xenorhabdus nematophila ATCC
19061]
gi|297631391|emb|CBJ92088.1| peptidyl-prolyl cis-trans isomerase (PPIase), involved in
maturation of outer membrane proteins [Xenorhabdus
nematophila ATCC 19061]
Length = 434
Score = 46.0 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 43/376 (11%), Positives = 109/376 (28%), Gaps = 16/376 (4%)
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS 314
+ + + +E+L+ + + + + A + + +SL
Sbjct: 55 KHAGQQIPDEKALRHQILERLIMDDIVLQMANRMQITIPDQTLDSAIAGIAAQNHLSLAQ 114
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
+ + D D+ + +K + + + + + E + + +
Sbjct: 115 LKQNLVADGISFDTYRNQIRKEMTISEVRNNEVRRRITILPQEVDSLTNQLEGQNNQDTE 174
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
+ I+ + E+ + + A T + +S + V + ++G K
Sbjct: 175 LNISHILIPLPENPNQAQVEKAETTVRNILSELKNGVDFGKLAITYSGDTQALKGGNMGW 234
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
K Q L +F + + + P S + I + R +T+V +K
Sbjct: 235 NKLQELPSLFTEQLQSAYKGQIIGPIRSGVGFHILKVNDTRGGNRSVAVTEVNARHILLK 294
Query: 495 TA-----EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG---- 545
T+ ++ S+ +L E F K R
Sbjct: 295 TSPVMNDDQARSELMKLREEILSGKTTFEKAAKEYS---EDPGSAMRGGELGWNLPSAYD 351
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDL 602
+ + P+ + + V ++ +KD+ L +
Sbjct: 352 PAFRDALTKLQKGEISQ-PVHSAFGWHVIQLLDSRKVDKTDAAQKDRAYRLLFNRKFNEE 410
Query: 603 LDSVIAYLKSQYSVTV 618
S + L++ V +
Sbjct: 411 AQSWMQELRASAYVKI 426
Score = 45.6 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 32/278 (11%), Positives = 78/278 (28%), Gaps = 15/278 (5%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
S + + + + ++ G + E+A L +IL+ L+ + Q + +
Sbjct: 40 ESDVDSLLQS-VELNAKHAGQQIPDEKA----LRHQILERLIMDDIVLQMANRMQITIPD 94
Query: 113 GRVWGEIARSPLFH-------GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
+ IA + ++ F + R I ++ I R +
Sbjct: 95 QTLDSAIAGIAAQNHLSLAQLKQNLVADGISFDTY--RNQIRKEMTISEVRNNEVRRRIT 152
Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
+ +N L Q + N S I L A + + + + K+
Sbjct: 153 ILPQEVDSLTNQLEGQNNQDTELNISHILIPLPENPNQAQVEKAETTVRNILSELKNGVD 212
Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKN-KEKYFSPEIRTVEQLVFPNQKEAD 284
+ + EL + + + + Y I + V + + +
Sbjct: 213 FGKLAITYSGDTQALKGGNMGWNKLQELPSLFTEQLQSAYKGQIIGPIRSGVGFHILKVN 272
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
+ + A S + ++ +
Sbjct: 273 DTRGGNRSVAVTEVNARHILLKTSPVMNDDQARSELMK 310
>gi|188526979|ref|YP_001909666.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
Shi470]
gi|188143219|gb|ACD47636.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
Shi470]
Length = 299
Score = 46.0 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 21/255 (8%), Positives = 61/255 (23%), Gaps = 14/255 (5%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
M + + K E+ + ++ + + L ++ +
Sbjct: 55 KSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLNQTPEFKAMMEAVK 114
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
A+ F + + + K + + +E
Sbjct: 115 KQALVE-----FWAKKQAEEVKKIQIPEKEMQDFYNANKDQ-----LFVKQEAHARHILV 164
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +S Q + + + S N + + D
Sbjct: 165 KTEDEAKRIISEIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFS 224
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----S 605
F+ P++ Y + + + D+ + M+ + L
Sbjct: 225 KAAFALTPGDYTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQ 284
Query: 606 VIAYLKSQYSVTVHD 620
I L+ + + ++
Sbjct: 285 RIEELRKRAKIVINK 299
>gi|219682071|ref|YP_002468455.1| survival protein SurA precursor [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219621804|gb|ACL29960.1| survival protein SurA precursor [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|311085883|gb|ADP65965.1| survival protein SurA precursor [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311087036|gb|ADP67116.1| survival protein SurA precursor [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087600|gb|ADP67679.1| survival protein SurA precursor [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 430
Score = 46.0 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 33/419 (7%), Positives = 107/419 (25%), Gaps = 16/419 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + + S + L + + + +S L +K+L+ L+ + +
Sbjct: 26 DNITAIVNDEIILNSD----VNEILVFLKKSKKKFIIP--LKSDFLKEKVLEKLIVDSLI 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + ++ I L L R N Y + K+
Sbjct: 80 LQEANSKNINITKEQIDTVIKNIALKKHISVN---HFKKQILLRNIKNPSYYDNFIKKIE 136
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + + + +Q F+ D ++ I PS + +
Sbjct: 137 ILLKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFKKINLSYILLPSFKQDSDNAVR 196
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ ++ + + + + + +
Sbjct: 197 NRIKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMFWKPLLDIQNSFFKTLNIFKKG 256
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
Q K + ++ +++ + + ++ ++ +
Sbjct: 257 QILGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIKPSVILTNTEAKKKIFN----- 311
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
I+ + I + + + + K ++ + + +
Sbjct: 312 --IYENIKKGIYTFDDAVKNLSDDYYSSNKKGDLGWISKESLGFDLNKKFLILDKNEISE 369
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ +D VD K K + + ++ + + +D + + +
Sbjct: 370 PVKSNWGWHIFKILDRRQVDAFYKLKKNQAFNIVLNQKIISEKNHWIEDLKNTAYIEII 428
>gi|311748699|ref|ZP_07722484.1| putative PPIC-type PPIASE domain protein [Algoriphagus sp. PR1]
gi|126577231|gb|EAZ81479.1| putative PPIC-type PPIASE domain protein [Algoriphagus sp. PR1]
Length = 666
Score = 46.0 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 57/657 (8%), Positives = 182/657 (27%), Gaps = 85/657 (12%)
Query: 34 LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
+ + +++++G + V I + G ++ + L+
Sbjct: 27 IQAQGQDESLMTIGGKPVEKDELIYLISKGKDSDPSSTG--MSRDEFEEN------LNQF 78
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY-- 151
++ + ++G++ F + + ++ L + + E E
Sbjct: 79 INYKLKVREAVELGMDESQE-----------FLMEFESYKENLKAPYLIKNSLEEGELRK 127
Query: 152 -IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+++ + ++ F + L +++ + +N + DPS
Sbjct: 128 AYSRMQEVVRASHILFQFPPNASQEDSLSVLRMALKVKDQIENGGDINELALEYSEDPSA 187
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ ++ ++ L + + + +K
Sbjct: 188 KQNKGDLGYFTALQMVQPFEDAAFSLQAGQVSDPVMTNFGYHIIKVLDKRPNPGQVRVSH 247
Query: 271 TVEQLVFPNQKEADEAF--------QSLKKGKKFIQLAEEQGKS----LSDISLGSFSKE 318
+ ++ + D A + K+ + + + + + L FS
Sbjct: 248 ILVRIDADDPNAEDLARRKVADIYTEIQKENTVWENIVKNYSEDPASSQNGGMLPWFSVG 307
Query: 319 YIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRIT 378
+ + FSL + G+ +P + +GY I + + KP SF+++++ I +++
Sbjct: 308 SMI-PEFEMAAFSLTEIGEVSPPVKTKYGYHILRLEDKKP--IDSFEDLEESIRSRIMRD 364
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
S ++ +++ + + + G + Q
Sbjct: 365 SRSTMIQSQVMAIQKSRYSFDENETSIGNLESELKTFTQIQLPGAVAAKGLDNNELFTLQ 424
Query: 439 LLFRVFGKDDPLSKDHTVALP---------DGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
+ + +P + ++ E+ + + + K+
Sbjct: 425 GTTYTMSDLVNFIESEELKIPVKTSAFDAWYDRFTAAKLNETEEQDILQNNKEYQMLLKE 484
Query: 490 ---------WKTVKTAEEV--------------------SSKANQLVLEYSKEGKNFRDI 520
+ ++ + + +++ +
Sbjct: 485 YHDGILMFSLMNQEVWQKGLQDSLGQRSFYQENIQDYQWDERVDAFIVKVLDMNQLNEAR 544
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQ----------VFSGPVEMVKCFPIENGLS 570
K G++L T + ++ V S IE
Sbjct: 545 AKLRGSTLSTELISSFESEFKSNNPLAYQTESGLLEFNNHPVLSEANLNESYQEIEVNGH 604
Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ + + ++ + + + + L S+ LK +Y V +++ +
Sbjct: 605 LHLIVLGDKLPAGPKDFSETRGLVIRDYQEFLEKSLTDRLKEKYPVQINNKSKEEAF 661
>gi|90021692|ref|YP_527519.1| hypothetical protein Sde_2047 [Saccharophagus degradans 2-40]
gi|89951292|gb|ABD81307.1| hypothetical protein Sde_2047 [Saccharophagus degradans 2-40]
Length = 289
Score = 46.0 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 19 VVLFVPFLIWGLSD-------ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L V + G SD S S V +V + + ++ LG
Sbjct: 10 IALAVLLVASGCSDKEPEEVVTSSSADSSEVVATVNGAPITSHELELAIERTLGA----- 64
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
N+E + L KK+LD+LV+ + Q E + L AD
Sbjct: 65 ----NAELFMTDELAKKLLDSLVASKAIAQKSEAL-LSADD 100
>gi|13476523|ref|NP_108093.1| hypothetical protein mll7863 [Mesorhizobium loti MAFF303099]
gi|14027284|dbj|BAB54238.1| mll7863 [Mesorhizobium loti MAFF303099]
Length = 310
Score = 46.0 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 14/171 (8%), Positives = 41/171 (23%), Gaps = 27/171 (15%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
ML ++RK + + + V + + V + +
Sbjct: 1 ML-MMRKYLFSAGFALLVAATSVSMTVMTPPAFASEIKY-----VVNDIPITTGDI--AH 52
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + +K G ++ +G+ +V
Sbjct: 53 RAAFLKLQRKKGDAA---------------QEMIDQTLRLAEARRLGIRISDAQVEAAYQ 97
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
R +NK + + G+ + + + ++ +
Sbjct: 98 R----FATNNKMQLGQLDGVMEKSGVGKDHFKEFIRAQMAWNQALSARYRS 144
>gi|298387000|ref|ZP_06996554.1| membrane protein [Bacteroides sp. 1_1_14]
gi|298260150|gb|EFI03020.1| membrane protein [Bacteroides sp. 1_1_14]
Length = 330
Score = 46.0 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V + + S + KQEL + + + K+LD+L+
Sbjct: 21 NKEIVAEVNDETILLSDLSEASKQELFDLLNM-----------AYEIKSKVLDDLIKKKL 69
Query: 99 LDQFIEDIGLEA 110
LD+ + + A
Sbjct: 70 LDKEAKKQNMTA 81
>gi|254453743|ref|ZP_05067180.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Octadecabacter
antarcticus 238]
gi|198268149|gb|EDY92419.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Octadecabacter
antarcticus 238]
Length = 388
Score = 46.0 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 39/141 (27%), Gaps = 17/141 (12%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
+ + + + + ++V V +G L+
Sbjct: 1 MLSPVMTAAQLAPAITVNDSVVSEFEIDQRVI--------MLGTFRTP-----GNLEDTA 47
Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
+ L+ + GL + G + D F++ L + G++E+
Sbjct: 48 REQLIEDRLKLAALNSAGLRITDEGLVGAMGE----FATRANMDLDQFITMLGQSGVSEE 103
Query: 150 EYIDHYTKMLSRTDVVGMFVG 170
+ D +S D +
Sbjct: 104 TFRDFVRVNVSWRDFIRTRFN 124
>gi|91202358|emb|CAJ75418.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 318
Score = 46.0 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 11/84 (13%), Positives = 19/84 (22%), Gaps = 21/84 (25%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V V QK+ + + LD L+
Sbjct: 44 DKDVVAIVNGQKITSNELY---------------------ELLLSTYGNEALDVLIRRTL 82
Query: 99 LDQFIEDIGLEADHGRVWGEIARS 122
++Q G+ V +I
Sbjct: 83 INQEARKHGISLTTKEVENKINTL 106
>gi|152991383|ref|YP_001357105.1| hypothetical protein NIS_1642 [Nitratiruptor sp. SB155-2]
gi|151423244|dbj|BAF70748.1| conserved hypothetical protein [Nitratiruptor sp. SB155-2]
Length = 279
Score = 45.6 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 18/184 (9%), Positives = 52/184 (28%), Gaps = 25/184 (13%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + ++ + L+
Sbjct: 21 DGIAVIVNDEPITLYEINKVINTT-------------------GLSRREAIQLLIREKLE 61
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
++ I+ +G+ D + + + G + +G + +++ + K L
Sbjct: 62 NEQIKKLGVTVDDIELDQALEKIAKQKGT----DLFGLQEAIISQGGDWEKFKEGLRKQL 117
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
R + + + L ++ + Y+E ++ + + PS VL + +
Sbjct: 118 LRKKL--YAALTRQQTQKLSEKDLKEYYETHKNEFEIAKEADIVKYISPSKEVLAKIAQN 175
Query: 220 YKDN 223
Sbjct: 176 PLYQ 179
>gi|30261271|ref|NP_843648.1| peptidylprolyl isomerase [Bacillus anthracis str. Ames]
gi|47526434|ref|YP_017783.1| peptidylprolyl isomerase [Bacillus anthracis str. 'Ames Ancestor']
gi|49184104|ref|YP_027356.1| peptidylprolyl isomerase [Bacillus anthracis str. Sterne]
gi|65318541|ref|ZP_00391500.1| COG0760: Parvulin-like peptidyl-prolyl isomerase [Bacillus
anthracis str. A2012]
gi|165873055|ref|ZP_02217675.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0488]
gi|167636140|ref|ZP_02394445.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0442]
gi|167641190|ref|ZP_02399444.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0193]
gi|170686825|ref|ZP_02878045.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0465]
gi|170709056|ref|ZP_02899485.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0389]
gi|177654451|ref|ZP_02936348.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0174]
gi|190566537|ref|ZP_03019454.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis Tsiankovskii-I]
gi|227815990|ref|YP_002815999.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. CDC 684]
gi|229603142|ref|YP_002865693.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0248]
gi|254682666|ref|ZP_05146527.1| peptidylprolyl isomerase [Bacillus anthracis str. CNEVA-9066]
gi|254725460|ref|ZP_05187242.1| peptidylprolyl isomerase [Bacillus anthracis str. A1055]
gi|254734085|ref|ZP_05191798.1| peptidylprolyl isomerase [Bacillus anthracis str. Western North
America USA6153]
gi|254740272|ref|ZP_05197964.1| peptidylprolyl isomerase [Bacillus anthracis str. Kruger B]
gi|254753611|ref|ZP_05205647.1| peptidylprolyl isomerase [Bacillus anthracis str. Vollum]
gi|254758708|ref|ZP_05210735.1| peptidylprolyl isomerase [Bacillus anthracis str. Australia 94]
gi|46396833|sp|Q81TU1|PRSA2_BACAN RecName: Full=Foldase protein prsA 2; Flags: Precursor
gi|30254885|gb|AAP25134.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. Ames]
gi|47501582|gb|AAT30258.1| peptidylprolyl isomerase PrsA [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178031|gb|AAT53407.1| protein export protein prsA [Bacillus anthracis str. Sterne]
gi|164711210|gb|EDR16767.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0488]
gi|167510831|gb|EDR86223.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0193]
gi|167528494|gb|EDR91259.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0442]
gi|170126011|gb|EDS94909.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0389]
gi|170669348|gb|EDT20091.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0465]
gi|172080735|gb|EDT65817.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0174]
gi|190562089|gb|EDV16057.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis Tsiankovskii-I]
gi|227006723|gb|ACP16466.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. CDC 684]
gi|229267550|gb|ACQ49187.1| peptidylprolyl isomerase PrsA2 [Bacillus anthracis str. A0248]
Length = 285
Score = 45.6 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 26/246 (10%), Positives = 83/246 (33%), Gaps = 20/246 (8%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + I++ + D + K K +K L
Sbjct: 42 DFEKQLKDRYGKDMLYEMIAQDVITKKYKVSDDDVDKEVQKAKSQYGDQFKNVLKNNGLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ L + + E ++V K + K ++A +
Sbjct: 102 DEADFKNQIKFKLSMNKAIKQSVTE---------KDVKDHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ + + + + + + + + P
Sbjct: 153 IKKKLDT-GASFEELAKQESQDLLSKEKGGDLGYFHSGAMTPEFETAAYKLKIGQI-SDP 210
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD------LLDSVIAYLKSQYSVTV 618
+++ Y + K+T K ++ D+ + + + + ++ ++ + ++ +
Sbjct: 211 VQSPNGYHIIKLTGKK--DLKPYDEVKNSIRKNLEEERTADPIFGKKLLQSELKKANIKI 268
Query: 619 HDNLIQ 624
+D+ ++
Sbjct: 269 NDSELE 274
>gi|304392008|ref|ZP_07373950.1| survival protein SurA [Ahrensia sp. R2A130]
gi|303296237|gb|EFL90595.1| survival protein SurA [Ahrensia sp. R2A130]
Length = 343
Score = 45.6 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 35/130 (26%), Gaps = 17/130 (13%)
Query: 34 LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNL 93
+ G+ V V + + K + + G + L
Sbjct: 54 INKRGGTRIAVLVNETPITSTDIARRAKFV--RLRRMKGNATTIAT-----------NEL 100
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
+ A + I A V A K+NK + L+R G + + D
Sbjct: 101 IDEAIKMKEARRINAVASDAEVSSAYAG----FAKNNKLTQPQLGQVLSRSGTTVRGFKD 156
Query: 154 HYTKMLSRTD 163
+ LS
Sbjct: 157 YIRASLSWQR 166
>gi|332716317|ref|YP_004443783.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium sp. H13-3]
gi|325063002|gb|ADY66692.1| peptidyl-prolyl cis-trans isomerase [Agrobacterium sp. H13-3]
Length = 287
Score = 45.6 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 70/187 (37%), Gaps = 4/187 (2%)
Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
E+ + + K ++N+E++A Y+K E ++ ++ EA +
Sbjct: 94 RMEFIQDRELHNAYFRKHVVDAVTNEEVKARYDKEVAALPKEEEIKAAHILVASEDEAKD 153
Query: 286 AFQSLKKGKKFIQLAEEQGKSLS---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ L GK F LA+E+ + LG F K + ++ F L K +
Sbjct: 154 VIKQLDAGKDFAALAKEKSTDSNKDDGGDLGWFGKGRMV-PEFEEAAFGLEKGAYTKTPV 212
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
FG+ + + + + + +F++V+ + + K +++ + + T
Sbjct: 213 KTQFGFHVIKLEDKRIAPPPAFEQVEPQVRQLVMRDKYVALIEKAKADQKIEIMDETLKK 272
Query: 403 EISRREK 409
K
Sbjct: 273 GYDEATK 279
>gi|326782586|ref|YP_004323042.1| peptidase [Synechococcus phage S-SM1]
gi|310002800|gb|ADO97199.1| peptidase [Synechococcus phage S-SM1]
Length = 702
Score = 45.6 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 40/475 (8%), Positives = 119/475 (25%), Gaps = 22/475 (4%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
+L + S + G V+ ++ + + L+ L+ + L
Sbjct: 221 QQEPEERDDAQLEVPSYQGGADVDETKSVTDEALAQALETLIDDNAKEWVY----LSIPD 276
Query: 113 GRVWGEIARSPLFHG--KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
V I + +++ + Y + +
Sbjct: 277 PDVDEYITTYDVVQENLQNHFYDDTRPYDWAENIQFAIDHYNTFKKDTQKTVNYLCKQFE 336
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
+ ++ A + ++
Sbjct: 337 MKKSADEYRRAATAKTGVIDTNKLHTYKYNDDIFKKVTVIPEGKNHGLVMHVDWSGSMQY 396
Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL-------VFPNQKEA 283
++ L + + S + ++ Y + + Q E
Sbjct: 397 QLLDTLKQTYNLIWFCKKSGIPFRVYAFQSGYGYGDTDNSSEGQDENALAISSDFRLLEL 456
Query: 284 DEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIH 343
+ Q+ + +K +QL Q +++ L +S + LA++I+ K +
Sbjct: 457 FSSRQNKQSLEKSMQLVYTQVFAMNGWRLRHYSPYTLGGTPLAEAIYCTRKIVAKMKRVE 516
Query: 344 GSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS--- 400
+ +++ + + ++ +D + + S K
Sbjct: 517 RVTKVNVICLTDGEANPISYVRQEPEDHPYRAGEWRYSYLCHMRGKLFFLRDPKTGYSRK 576
Query: 401 ----MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
E ++ ++ ++ G + K+ E + D K+
Sbjct: 577 ISTSPYETTKEIVSFYREITDYNWIGIRLCSKQDLTRLVNEFAADQRDEIDKSWKKERFA 636
Query: 457 ALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
++ D + + + +V + K T +++ +
Sbjct: 637 SIKDRAGFTESFFMPDKNTGHGSMDLDVKQKSEVATKAELTRAFKKHMGSKMANK 691
>gi|261417353|ref|YP_003251036.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261373809|gb|ACX76554.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302327407|gb|ADL26608.1| PPIC-type PPIASE domain protein [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 335
Score = 45.6 bits (105), Expect = 0.022, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 9/171 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L G++ A S S V+ V + + + Q G + E
Sbjct: 10 AAAVLLTAGIASAQLMNSKSLDVIRVEKTGISAGKIDSLATMLGQQ--QAPGQKLTDEMM 67
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L ++DNLV + + +G++ +V + LF + S D F
Sbjct: 68 --TQLRYAVVDNLVGQELIKLEAKKMGIKVAPAKVDSL---TNLFKKQFP--SEDAFQKE 120
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
L + K++ + L ++ V +A +++
Sbjct: 121 LKKSNTTMKQFKEKIEDQLKSEQILEKKVPYPSAPTEKDLEAFWQLNKSKV 171
Score = 41.8 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 27/268 (10%), Positives = 61/268 (22%), Gaps = 7/268 (2%)
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSID 414
+ E+ + + +++ + + +D ++ K
Sbjct: 54 QQQAPGQKLTDEMMTQLRYAVVDNLVGQELIKLEAKKMGIKVAPAKVDSLTNLFKKQFPS 113
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
K E L + + D W Q+ +S A
Sbjct: 114 EDAFQKELKKSNTTMKQFKEKIEDQLKSEQILEKKVPYPSAPTEKDLEAFW-QLNKSKVA 172
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL-TTNQ 533
+ + + K + + L + + F +
Sbjct: 173 INDTISGARIFISTKGKNAQEISDAKDMLKGLAAQVRSKKATFAQLAAMYSDDKEAKKTG 232
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
K V V + EN +F +T G + I Y
Sbjct: 233 GIMNKFVAKSKSAAFAKAVGKIKVGDISEVITEN-DGVSIFMLTEKNDGKFESYKHQIDY 291
Query: 594 LTQMMNKDLLDS----VIAYLKSQYSVT 617
+ ++ + + + L Y V
Sbjct: 292 ILRVQAEQERQAKLKAYLDDLGKTYKVQ 319
>gi|254780396|ref|YP_003064809.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040073|gb|ACT56869.1| peptidyl-prolyl cis-trans isomerase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 317
Score = 45.6 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 31/220 (14%), Positives = 68/220 (30%), Gaps = 29/220 (13%)
Query: 3 EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
+ I+ + +V IF +V V + W +S + + ++ + +
Sbjct: 11 DFIKLLTTYFVLIIFCIVPIVSYKSWAMSSRIRT--------TINGEVITDGDISKRI-- 60
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
L + + G L+K + L+ Q IE G+ D V +
Sbjct: 61 ALLKLQKINGE-----------LEKIAVQELIVETLKKQEIEKSGITFDSNTVNYFFVQ- 108
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
H ++ S + F S L ++GI + + + L+ + V +
Sbjct: 109 ---HARNTGLSAEDFSSFLDKQGIGDNHF----KQYLAIQSIWPDVVKNDFMLKYGNLEM 161
Query: 183 KRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
+ + + + V + + L K
Sbjct: 162 EIPANKQKMKNITVREYLIRTVLFSIPDNKLQNQGFVQKR 201
>gi|217958742|ref|YP_002337290.1| peptidylprolyl isomerase [Bacillus cereus AH187]
gi|229137952|ref|ZP_04266551.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST26]
gi|217064761|gb|ACJ79011.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH187]
gi|228645609|gb|EEL01842.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST26]
Length = 285
Score = 45.6 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 34/265 (12%), Positives = 84/265 (31%), Gaps = 16/265 (6%)
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
K D T ++ + K+L++ + +++ + D +
Sbjct: 21 CGQKNDSDTVATATDSTITKSDFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDDDVDKEL 80
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
K K +K L + L + I E ++V
Sbjct: 81 QKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAMNEAIKKSITE---------KDVKD 131
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF- 543
K + K ++A ++ + G +F ++ K LL+ + + N
Sbjct: 132 HYKPEIKASHILVSDENEAKEIKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGR 190
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLTQMMNKD 601
+ + + V + P+ + Y + K+T+ K + KD L + D
Sbjct: 191 MAPEFETAAYKLKVGQISN-PVASPNGYHIIKLTDKKALKPYDEVKDSIRKNLEEERISD 249
Query: 602 --LLDSVIAYLKSQYSVTVHDNLIQ 624
++ + ++ ++D+ ++
Sbjct: 250 PIFGKKLLQNELKKANIKINDSELK 274
>gi|56416400|ref|YP_153474.1| hypothetical protein AM041 [Anaplasma marginale str. St. Maries]
gi|254994626|ref|ZP_05276816.1| hypothetical protein AmarM_00174 [Anaplasma marginale str.
Mississippi]
gi|56387632|gb|AAV86219.1| hypothetical protein AM041 [Anaplasma marginale str. St. Maries]
Length = 401
Score = 45.6 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + K A + ++L +LV + L+
Sbjct: 29 AVVDGKAITSLDVSRRTKANAFFYK----------TAHAGSDQGEVLQSLVDESVLELEA 78
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+++G+ + E ++ G + S +A+ G++ K DH + +
Sbjct: 79 KELGISVGKRELEAEASKMFSVLGVCDGLS---VGECVAQNGLDYKSVEDHLRSRVIWSK 135
Query: 164 VVGMFVG 170
++ V
Sbjct: 136 ILATRVA 142
>gi|207722835|ref|YP_002253270.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
solanacearum MolK2]
gi|206588019|emb|CAQ18600.1| ppic-type peptidyl-prolyl cis-trans isomerase protein [Ralstonia
solanacearum MolK2]
Length = 278
Score = 45.6 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 8/86 (9%), Positives = 22/86 (25%), Gaps = 14/86 (16%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+++ S A + V +V + + + + G N
Sbjct: 10 AAAAGLMLFAASQAWADGLSAGVVATVNGTPITQAQLDRAV--------AQTGAGANP-- 59
Query: 80 ARSVGLDKKILDNLVSGATLDQFIED 105
+ + + L++ Q
Sbjct: 60 ----NVVQALKQQLIARELFRQQAAK 81
>gi|42527165|ref|NP_972263.1| basic membrane protein, putative [Treponema denticola ATCC 35405]
gi|41817589|gb|AAS12174.1| basic membrane protein, putative [Treponema denticola ATCC 35405]
gi|325474208|gb|EGC77396.1| basic membrane protein [Treponema denticola F0402]
Length = 358
Score = 45.6 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 31/249 (12%), Positives = 80/249 (32%), Gaps = 30/249 (12%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+F+ ++ G L + + + V ++ + K + G + +
Sbjct: 5 IFIAVMLVGFLGLLSAQNDLQVIAQVNLSKKEPITLGQLKKLVK----FAESQGGNIATN 60
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+ K +L++L+ L Q E ++ + +V + K +
Sbjct: 61 DD------KKLVLESLMRTKLLVQAAEKENIKISNSQVDNAFNDVLSQYVKYPITESEFA 114
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+E I+ E++ G L
Sbjct: 115 KLIKQKENISLDEFMKK--------------QTGCTVEELKKIIKD---NLIIQNYIASK 157
Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
+ + +A P++A + ++E K P+ ++ ++ K+K+ +EL +
Sbjct: 158 HQAEIVKMATPTDAQIRSYYEMKKGELVRPDMVKMLFVAVKKEGKDKEEIDKINELHKKV 217
Query: 258 EKNKEKYFS 266
+KN ++ +
Sbjct: 218 KKNIKEIAN 226
>gi|319639214|ref|ZP_07993965.1| hypothetical protein HMPREF0604_01589 [Neisseria mucosa C102]
gi|317399398|gb|EFV80068.1| hypothetical protein HMPREF0604_01589 [Neisseria mucosa C102]
Length = 290
Score = 45.6 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 5/136 (3%)
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
++ D + A + + + + + K G + +
Sbjct: 160 EIVTDSNSNAQKAIADLDAKKSFVSVLNQY-SIDEAAKKAGGIPKAYVPLKDLQESA--- 215
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD 604
V P++NG Y VF V + + V + + + + ++
Sbjct: 216 -PPLYEAVKDLKKGAHTKTPLQNGNLYAVFYVNDRRNVTVPSYEASKNEIGSDLQGARVN 274
Query: 605 SVIAYLKSQYSVTVHD 620
+ I L + S+ V+
Sbjct: 275 AAIQSLLKKASIKVNK 290
>gi|309789583|ref|ZP_07684164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
trichoides DG6]
gi|308228319|gb|EFO81966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
trichoides DG6]
Length = 317
Score = 45.6 bits (105), Expect = 0.023, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 6/142 (4%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG-MISQKIGFVVNSERARSVGLDKKI 89
AL + + ++ VG + F + ++G I+ I E+ ++ D+K+
Sbjct: 30 GAALQVSATNPQILRVGPDTYTLNDFTQRMQADIGPAIANMIQSGQTREQIETLANDQKV 89
Query: 90 ----LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF-SHDVFVSRLARE 144
D +V L Q+ G+ D +V + F S A++
Sbjct: 90 RAGIFDAMVQELLLMQYARSHGIGVDPAQVDANFFSMTRPFDPSDPFASPSADRLMQAQQ 149
Query: 145 GINEKEYIDHYTKMLSRTDVVG 166
+ + + + ++
Sbjct: 150 QLTLEVLARNTRADMFHARMLQ 171
>gi|293391019|ref|ZP_06635353.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951553|gb|EFE01672.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 310
Score = 45.6 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 34/123 (27%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ ++ Q+ + F D L+ + +Q
Sbjct: 185 QAKAQLEQIRADIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPEMYVGPFNQAVRTTK 244
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQE---KDKFISYLTQMMNKDLLDSVIAYLKSQY 614
V P + + +VTN++ E + K + +D + L+ +
Sbjct: 245 PGVISAPFRTEFGWHILEVTNTRQADRTEDAYRQKAYEQIVNQQLQDSARDWVQALRKRV 304
Query: 615 SVT 617
+
Sbjct: 305 DIK 307
Score = 44.5 bits (102), Expect = 0.049, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 48/157 (30%), Gaps = 28/157 (17%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K L F++ + V +V + S ++
Sbjct: 5 LKFVLFAAIGFFVLA-----AHVHAEEKVVATVNGIPILESQVQSAIN------------ 47
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ + L+ ++ +DQ +++ ++ ++ ++ I N +
Sbjct: 48 -------KKTNDRQAALNKVIDDILVDQAVKESDVKVNNAQIDQIIEGIAA----QNGLT 96
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ L +GI+ + Y + + ++V +
Sbjct: 97 FGQLLDALDYQGISYRAYRQQIAQQVMMSEVRNHAIS 133
>gi|228938382|ref|ZP_04100992.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228971261|ref|ZP_04131889.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228977871|ref|ZP_04138252.1| Foldase protein prsA 2 [Bacillus thuringiensis Bt407]
gi|228781788|gb|EEM29985.1| Foldase protein prsA 2 [Bacillus thuringiensis Bt407]
gi|228788411|gb|EEM36362.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228821244|gb|EEM67259.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|326938890|gb|AEA14786.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 285
Score = 45.6 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 22/219 (10%), Positives = 74/219 (33%), Gaps = 11/219 (5%)
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ ++ K + I ++ F K ++ +
Sbjct: 57 YEMMAQDVITKKYKVPDEEVNKEIEKVKKQYGDQFKKVLENNRLKDEEDFKNQIKFKLAM 116
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ ++V K + K ++A ++ + G +F ++ K LL
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIKASHILVSDENEAKEIKSKLD-AGASFEELAKQESQDLL 175
Query: 530 TTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ ++ + + + + + V + P+++ Y V K+T+ K ++ D
Sbjct: 176 SKDKGGDLGYFNSGTMAPEFETAAYKLNVGQISN-PVKSSNGYHVIKLTDKK--DLKPYD 232
Query: 589 KFISYLTQMMNKD------LLDSVIAYLKSQYSVTVHDN 621
+ + + + + ++ ++ + ++ ++D+
Sbjct: 233 EVKNSIRKNLEEERTADPAFSQKLLQEELKKANIKINDS 271
>gi|30019316|ref|NP_830947.1| peptidylprolyl isomerase [Bacillus cereus ATCC 14579]
gi|229126572|ref|ZP_04255586.1| Foldase protein prsA 2 [Bacillus cereus BDRD-Cer4]
gi|46396826|sp|Q81GN0|PRSA2_BACCR RecName: Full=Foldase protein prsA 2; Flags: Precursor
gi|29894859|gb|AAP08148.1| Peptidyl-prolyl cis-trans isomerase [Bacillus cereus ATCC 14579]
gi|228656961|gb|EEL12785.1| Foldase protein prsA 2 [Bacillus cereus BDRD-Cer4]
Length = 285
Score = 45.6 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V K + K ++A ++ + G +F ++ K LL+ ++ +
Sbjct: 125 TEKDVKDHYKPEIKASHILVSDENEAKEIKSKLD-AGASFEELAKQESQDLLSKDKGGDL 183
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + + + V + P+++ Y V K+T+ K + KD L
Sbjct: 184 GYFNSGTMAPEFETAAYKLNVGQISN-PVKSSNGYHVIKLTDKKALKPYDEVKDSIRKNL 242
Query: 595 TQMMNKD--LLDSVIAYLKSQYSVTVHDN 621
+ D ++ + ++ ++D+
Sbjct: 243 EEERTADPVFSKKLLQEELKKANIKINDS 271
>gi|224369908|ref|YP_002604072.1| PpiC2 [Desulfobacterium autotrophicum HRM2]
gi|223692625|gb|ACN15908.1| PpiC2 [Desulfobacterium autotrophicum HRM2]
Length = 225
Score = 45.6 bits (105), Expect = 0.024, Method: Composition-based stats.
Identities = 17/154 (11%), Positives = 44/154 (28%), Gaps = 12/154 (7%)
Query: 14 AKIFLVVLFV--PFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
++ ++ V + W + ++ G + F + +
Sbjct: 1 MRVVFFLIVVLSCLIPWCPHGEDVPDKTGTYLLKSGDLVITDREFSEELELKRAAYP--Y 58
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
G N ++ + +++D L L + D G+ + A F
Sbjct: 59 GIQKNPNEYNTLVI--ELVDQLSEELVLRRAARDRGIYVTDQELK---ANEEAFRQD--- 110
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
+ D F L ++ + + L ++
Sbjct: 111 YPEDSFEKLLVENAVSHRFWRHRLKLSLLFDRLI 144
>gi|52783929|ref|YP_089758.1| YacD [Bacillus licheniformis ATCC 14580]
gi|163119182|ref|YP_077358.2| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
licheniformis ATCC 14580]
gi|319648596|ref|ZP_08002810.1| YacD protein [Bacillus sp. BT1B_CT2]
gi|52346431|gb|AAU39065.1| YacD [Bacillus licheniformis ATCC 14580]
gi|145902685|gb|AAU21720.2| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
licheniformis ATCC 14580]
gi|317389363|gb|EFV70176.1| YacD protein [Bacillus sp. BT1B_CT2]
Length = 296
Score = 45.6 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 21/298 (7%), Positives = 75/298 (25%), Gaps = 39/298 (13%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ IF+ + + +++ + S S + +G+ + + L + ++
Sbjct: 10 ILGAIFVNCIVIAYVLT-KAQTASSSSAQEVIAHIGKNGITREEW-------LSEMEERY 61
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL----FHG 127
G K L+++++ + Q E ++ + E F+
Sbjct: 62 G--------------KSTLEDMINDRVVTQMAEKNKIKVSDDDIEREFLLIKAVYNSFYE 107
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
+N + + E D + + +
Sbjct: 108 DENTTEKEWKEQIKHNILLEELLTKDIVISDSELKSFYNKNKDLYKFDDSYRLKHIVVKD 167
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQW-------------FEKYKDNYRAPEYKRISY 234
++ + + A + ++ + + +++
Sbjct: 168 KDEAEQVLKELKEGSSFEAAAAEHSTDRYTAPYGGDLGFVNDQHENVPAEYLEKAEQLKE 227
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
+ + + +L+ + Y + + Q+ + K
Sbjct: 228 NQWVDEPIKTSQGYAIIQLKEKLPGQAFTYSEVKNQIRRQIAMDQLGDKASVKTLWKD 285
>gi|163848606|ref|YP_001636650.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
aurantiacus J-10-fl]
gi|222526541|ref|YP_002571012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
Y-400-fl]
gi|163669895|gb|ABY36261.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
aurantiacus J-10-fl]
gi|222450420|gb|ACM54686.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus sp.
Y-400-fl]
Length = 302
Score = 45.6 bits (105), Expect = 0.025, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 9/133 (6%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQEL-----GMISQKIGFVVNSERARSVGLDKKILDNL 93
S +G Q + K+ + ++ + L ++I + +
Sbjct: 29 DSPVAFRLGTQVFTVADVNAEIKRAIGDGVANALASGQTREQVEQIVVENDLRRQIFEQM 88
Query: 94 VSGATLDQFIEDIGLEADHGRVWGEI-ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
+ L Q+ G+ D + EI AR P + LARE I
Sbjct: 89 IQNELLLQYARQHGIGIDPAALDAEIAARLPADADPAEVQD---LRNVLAREQIVFAVIA 145
Query: 153 DHYTKMLSRTDVV 165
+ ++R +
Sbjct: 146 RNTRADMARARHI 158
>gi|326391780|ref|ZP_08213299.1| hypothetical protein TheetDRAFT_2540 [Thermoanaerobacter
ethanolicus JW 200]
gi|325992168|gb|EGD50641.1| hypothetical protein TheetDRAFT_2540 [Thermoanaerobacter
ethanolicus JW 200]
Length = 238
Score = 45.6 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 11/180 (6%), Positives = 38/180 (21%), Gaps = 12/180 (6%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
+ + + + V + + F L ++ +
Sbjct: 50 AFFKGNKDKLQIDKGDVIAEVNGIPIYNNEFELRKGLTLA------------SGVQTDNI 97
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
D IL L+ + ++ + I + + + +
Sbjct: 98 DDYILQKLIKEKVQEYLANKYNIKVSQNEINAYIEKEKKEFNEYPEAKKKLDELISTSGM 157
Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
++ + + R + + + + K+ V
Sbjct: 158 TEDEYWNTYEKYNAKRILLFSKLYNSIIEEGIKSGRLKKAEEMTNDVQNEYKRYVDSIID 217
>gi|312621942|ref|YP_004023555.1| ppic-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202409|gb|ADQ45736.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 340
Score = 45.6 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 50/142 (35%), Gaps = 6/142 (4%)
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS--LLTTNQIN---RMDN 539
D+ + + AN++V E K+G++F + K TT I R
Sbjct: 195 DIFLKVENEEEDARKREIANKIVSEL-KKGESFEKLVKKYSEDDGASTTKGIIDYFRKGE 253
Query: 540 ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
+ +G +VF V + ++V + + + K++ S L +
Sbjct: 254 KEAEYGSVFEEEVFKLAVGQISNVIKTVKGYHIVKVLDEKYMPLDEVKEEIQSKLMKQKK 313
Query: 600 KDLLDSVIAYLKSQYSVTVHDN 621
+ I LK + V+ +
Sbjct: 314 DEAFRLYIENLKKLSKINVYKD 335
Score = 42.9 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 19/261 (7%), Positives = 48/261 (18%), Gaps = 8/261 (3%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA-----RSVGLDKKILDNLVS 95
V+ V ++V + + Q ++ L ++ L
Sbjct: 36 RVVLEVNGEQVTKREYKIRFNALKENAIQFSSRTDILDQVFNGKTYRELLKDELFTILTE 95
Query: 96 GATLDQFIEDIGLEAD---HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
Q + + I F+ + Y
Sbjct: 96 ELLCLQEARKRNINLTKQEEEEIKKYIQELKTNEEMRGYFNQYLRKINSDENHFYRDLYK 155
Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + V N +F ++ + N A
Sbjct: 156 TRLINKLYSSITSKTTVSDSEIINYYNTNKNQFKKRKIIDIFLKVENEEEDARKREIANK 215
Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
+ +K + + + E + +E + +
Sbjct: 216 IVSELKKGESFEKLVKKYSEDDGASTTKGIIDYFRKGEKEAEYGSVFEEEVFKLAVGQIS 275
Query: 273 EQLVFPNQKEADEAFQSLKKG 293
+ +
Sbjct: 276 NVIKTVKGYHIVKVLDEKYMP 296
>gi|83749030|ref|ZP_00946037.1| Signal Peptide isomerase rotamase [Ralstonia solanacearum UW551]
gi|83724293|gb|EAP71464.1| Signal Peptide isomerase rotamase [Ralstonia solanacearum UW551]
Length = 299
Score = 45.6 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%)
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ K + DEL +YEK K ++ + + ++ + +A LK G F +
Sbjct: 135 FEDYVKNSPTTEDELHKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEE 194
Query: 299 LAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A+ Q K + G P + ++ L K + FG+ + + +
Sbjct: 195 IAKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEITLTPVKTQFGWHVIRLDD 254
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEK 383
+ + +F++VK + M + ++
Sbjct: 255 TRDAKIPAFEDVKPQLLEMMMGDQNWQR 282
>gi|239815915|ref|YP_002944825.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
S110]
gi|239802492|gb|ACS19559.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
S110]
Length = 261
Score = 45.6 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 48/131 (36%), Gaps = 2/131 (1%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGY 546
K++K E +A +++ + K+G F DI K + +D F
Sbjct: 132 KEYKARHILVETEDQAKKIMADL-KKGAKFEDIAKKQSKDPGSGANGGDLDWANPASFVP 190
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ + P++ Y + +V + + + + ++ +TQ + + L
Sbjct: 191 EFSEAMIKLKKGETTPAPVKTQFGYHIIRVDDVRQAQLPKLEEVQPQITQQLQQQRLQKY 250
Query: 607 IAYLKSQYSVT 617
L+++ V
Sbjct: 251 QEELRAKAKVE 261
>gi|15966379|ref|NP_386732.1| hypothetical protein SMc02451 [Sinorhizobium meliloti 1021]
gi|307313034|ref|ZP_07592661.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
meliloti BL225C]
gi|307321040|ref|ZP_07600446.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
meliloti AK83]
gi|15075650|emb|CAC47205.1| Conserved hypothetical protein, contains a peptidyl-prolyl
cis-trans isomerase signature [Sinorhizobium meliloti
1021]
gi|306893315|gb|EFN24095.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
meliloti AK83]
gi|306899353|gb|EFN29987.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sinorhizobium
meliloti BL225C]
Length = 284
Score = 45.6 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 26/159 (16%), Positives = 60/159 (37%), Gaps = 4/159 (2%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
+++E++A Y+K E ++ + EA + + L GK F LA+ + +
Sbjct: 117 TSEEVKARYDKEVAAIPPQEEVKARHILVKTEDEAKDVIKELDAGKNFADLAKAKSTDPN 176
Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
LG F+K + + F+L K + FG+ + + + +P + +
Sbjct: 177 KEEGGDLGYFTKGRMV-PEFETAAFALEKGAYTKTPVKTQFGFHVILIEDKRPQAPPTLE 235
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+V+ + + K E + + ++
Sbjct: 236 QVEPQVRQLVMRDKYLELLNSAKESTAVEISDPALKKAY 274
Score = 40.6 bits (92), Expect = 0.74, Method: Composition-based stats.
Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 11/89 (12%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + VG Q++ S + + + L
Sbjct: 19 GVARAEGTDPVIAKVGDQEIRQSELDLAITSLDPQLQRMP----------DEQKRAAALS 68
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ L + E GL+ + +A
Sbjct: 69 AVIDVKLLLKDAEKEGLQ-NDEAFKQRVA 96
>gi|254255307|ref|ZP_04948623.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
AUO158]
gi|124901044|gb|EAY71794.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia dolosa
AUO158]
Length = 292
Score = 45.6 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 18/77 (23%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
S V +V V + + R + ++L LV+
Sbjct: 41 SADAGDVVATVNGVAVHRAELDEAM------------------IGRQESMRPQVLQGLVA 82
Query: 96 GATLDQFIEDIGLEADH 112
L Q E GL
Sbjct: 83 RELLRQAAERDGLGNTE 99
>gi|210608663|ref|ZP_03287940.1| hypothetical protein CLONEX_00119 [Clostridium nexile DSM 1787]
gi|210152920|gb|EEA83926.1| hypothetical protein CLONEX_00119 [Clostridium nexile DSM 1787]
Length = 344
Score = 45.6 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 37/127 (29%), Gaps = 7/127 (5%)
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
+ + LE +K ++F G T D+E+ + I+ S
Sbjct: 202 EKAALKETAAAFLEGAKAAEDFAAYATEQGKEAQTAT----FDSESTSPAAELIAAADSL 257
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
V Y V KVT+ + + + + V K
Sbjct: 258 GVGGFTDVIETENGLY-VAKVTSLLDRDATDAK--KETIVNSRKSEKFNGVYDGWKKDTK 314
Query: 616 VTVHDNL 622
+ V+ ++
Sbjct: 315 IKVNKDV 321
Score = 41.8 bits (95), Expect = 0.34, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 46/137 (33%), Gaps = 15/137 (10%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPF--SSFINSWKQ 62
+R + K+ + + ++ S + TV +VG K+P ++F ++Q
Sbjct: 1 MRNLKK----KVVVFATAASLAVVSMTGCA-SFENADTVATVGGDKIPAGVANFYARYQQ 55
Query: 63 --ELGMISQKIGFVVNSERA-----RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ +G + ++ + ++D L L+ + + +
Sbjct: 56 GMIETNLGSMLGDNMWTQEVSEGKTYEDNVKDSVMDALQQMYILEDHMAEYEVVLTDEE- 114
Query: 116 WGEIARSPLFHGKDNKF 132
I + + N+
Sbjct: 115 KSAIQEAAKKFDEGNEL 131
>gi|146339260|ref|YP_001204308.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
gi|146192066|emb|CAL76071.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
Length = 341
Score = 45.6 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 6/130 (4%)
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKC 562
+V + + G +F + + T + + + SQV V
Sbjct: 205 EDVVRKLKQPGTDFAALARASSDETATAEKDGEIGWVPEPNLRGEIRSQVAGLAKGGV-T 263
Query: 563 FPIENGLSYVVFKVTNSKV----GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
PI + V K+ ++ + KD I L + +A L Q V
Sbjct: 264 DPIRLDDGWHVVKLLDTDASTTRPLAEVKDVLIQRLRAERADANRRAYVAELVKQTPSVV 323
Query: 619 HDNLIQRYLD 628
++ + R
Sbjct: 324 NEIALGRLFG 333
>gi|49480029|ref|YP_035403.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|49331585|gb|AAT62231.1| peptidyl-prolyl cis-trans isomerase (protein export protein)
[Bacillus thuringiensis serovar konkukian str. 97-27]
Length = 285
Score = 45.6 bits (105), Expect = 0.026, Method: Composition-based stats.
Identities = 27/246 (10%), Positives = 85/246 (34%), Gaps = 20/246 (8%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + I++ + D + K K +K L
Sbjct: 42 DFEKQLKDRYGKDMLYEMIAQDVITKKYKVSDDDVDKEVQKAKNQYGDQFKNVLKNNGLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ L + + E ++V K + K ++A +
Sbjct: 102 DEADFKNQIKFKLSMNKAIKQSVTE---------KDVKDHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
+ + + G +F ++ K LL+ + + N + + + + + P
Sbjct: 153 IKKKL-EAGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKIGQISN-P 210
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS------VIAYLKSQYSVTV 618
+++ Y + K+T+ K ++ D+ + + + ++ + ++ + ++ +
Sbjct: 211 VKSPNGYHIIKLTDKK--ELKPYDEVKDSIRKNLEEERIADPTFSHKLLQKELKKANIKI 268
Query: 619 HDNLIQ 624
+D+ ++
Sbjct: 269 NDSELE 274
>gi|291277225|ref|YP_003516997.1| major antigenic peptide PEB3\cell binding factor 2 [Helicobacter
mustelae 12198]
gi|290964419|emb|CBG40269.1| major antigenic peptide PEB3\cell binding factor 2 [Helicobacter
mustelae 12198]
Length = 278
Score = 45.6 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 22/242 (9%), Positives = 64/242 (26%), Gaps = 18/242 (7%)
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
+ + + + + + + K++ L + + L
Sbjct: 36 KDFDVLKQQAPDFDFNKLTTEQKNGLINQKVNEILIEKAAKKEKLDQTREYQEALENIKK 95
Query: 456 VALPDGSYMWVQ------IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
L V + + + ++++ + +A +++ E
Sbjct: 96 QLLLQAWQHNVAEQAKKTVIPEAEVKKFYDDNPKQFIQQEGHARHILVKTKEEAEKIIAE 155
Query: 510 YSKEGKN-----FRDIGKNLGASLLTTNQINRMD---NENKFFGYDGISQVFSGPVEMVK 561
+K K+ F ++ N D + + VF+
Sbjct: 156 LNKAPKSRVEQKFIELANKYTTDPNAKKAQNGGDLGTFQRNQMVPEFGDAVFALSPNTYT 215
Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV----IAYLKSQYSVT 617
P++ Y V + + + M + + I +L+S +T
Sbjct: 216 KTPVKTQYGYHVVYLIKKGSPKTISFAEAKPTIENMFKERKFQEMAQDKIQHLRSNAKIT 275
Query: 618 VH 619
++
Sbjct: 276 IN 277
>gi|262193738|ref|YP_003264947.1| hypothetical protein Hoch_0413 [Haliangium ochraceum DSM 14365]
gi|262077085|gb|ACY13054.1| hypothetical protein Hoch_0413 [Haliangium ochraceum DSM 14365]
Length = 549
Score = 45.6 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 19/158 (12%), Positives = 39/158 (24%), Gaps = 25/158 (15%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V +G Q + + ++ L + + + K D V L
Sbjct: 243 ETEVARLGGQPITRAE-----QRVLAGYQAAL------AQHEYWRIAKMQFDKYVDRFLL 291
Query: 100 DQFIEDIGLE--------------ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
+ E + +E V IA +P + N F R RE
Sbjct: 292 AREAEALAVEVSELEQMERGRMPAVSDAEVRAFIAENPEYKTAQNGFERARDNVRRLREQ 351
Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ + ++ + +
Sbjct: 352 GAYESLLKRLRAAADIRFLLEEPSFDQIAVEVPGPRWY 389
>gi|164688876|ref|ZP_02212904.1| hypothetical protein CLOBAR_02524 [Clostridium bartlettii DSM
16795]
gi|164602080|gb|EDQ95545.1| hypothetical protein CLOBAR_02524 [Clostridium bartlettii DSM
16795]
Length = 351
Score = 45.6 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 34/328 (10%), Positives = 84/328 (25%), Gaps = 25/328 (7%)
Query: 303 QGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS--NIKPSF 360
+ LG S + + + + + S
Sbjct: 42 YKIYTNWTRLGYESSYGFTSSTWETEMQDQTTSSNSDSSGTSDKSKSSEKTTYWDNFKSQ 101
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
+ E + I + + K KE +++++F S + + K I + +
Sbjct: 102 VLQAMEQSEVIYQKAKEVKVEPTDKEIQEQVDDFNKSINSNETTKEQAKKAGITDKFLTY 161
Query: 421 -AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
+++ K + K + S S++ + K+S
Sbjct: 162 IFTRELANSAYQEYFNKHTKVDDATLKKEYESNKQAYNTVTASHILISTKDSDGKELSAK 221
Query: 480 EEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN 539
++ K + K K G++F + K +
Sbjct: 222 KKAEAKKKAEEVLQKA----------------KNGEDFAKLAKKYSEDTSNAENGGELGA 265
Query: 540 EN-KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
+ F + +E Y + KVT+ D + + +
Sbjct: 266 FTYPQMVEEFSKAAFKLNKGDISDI-VETSYGYHIIKVTD----KADTFDAVKNSVKTAV 320
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + L + V++ ++
Sbjct: 321 LSNKYSEQVQKLFDDAKIDVNEKELKSV 348
Score = 43.7 bits (100), Expect = 0.096, Method: Composition-based stats.
Identities = 12/196 (6%), Positives = 46/196 (23%), Gaps = 30/196 (15%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+V L + ++ ++ S +++V +V + +P + GF ++
Sbjct: 7 IVALVLAMVL---GISMIGCSSNNSVATVNGEGIPLEYYKIYTNWTRLGYESSYGFTSST 63
Query: 78 ERARSV---------------------------GLDKKILDNLVSGATLDQFIEDIGLEA 110
++L + + Q +++ +E
Sbjct: 64 WETEMQDQTTSSNSDSSGTSDKSKSSEKTTYWDNFKSQVLQAMEQSEVIYQKAKEVKVEP 123
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ ++ + + + + + + V
Sbjct: 124 TDKEIQEQVDDFNKSINSNETTKEQAKKAGITDKFLTYIFTRELANSAYQEYFNKHTKVD 183
Query: 171 GMRPSNLLLDQAKRFY 186
+ +
Sbjct: 184 DATLKKEYESNKQAYN 199
>gi|210134373|ref|YP_002300812.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori P12]
gi|210132341|gb|ACJ07332.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori P12]
Length = 299
Score = 45.6 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 54/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
E + R +V + + A+ + + F + + + K
Sbjct: 83 EQAIRTALVENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKVQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQ-----LFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
++ + M+ + L I L+ + ++
Sbjct: 258 VTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKIVINK 299
>gi|261406730|ref|YP_003242971.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
Y412MC10]
gi|261283193|gb|ACX65164.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
Y412MC10]
Length = 363
Score = 45.6 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 29/308 (9%), Positives = 77/308 (25%), Gaps = 26/308 (8%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+ F +++ V L+ + + + +V ++ S F + I
Sbjct: 11 LKWLFIAGFFILIVVTILLIAKPAFTQTHHEDAYIATVDGVEIHVSEFQRAIDANRAGII 70
Query: 69 QKIGFVVNS-------------ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ ++ + KK L++ ++ ++
Sbjct: 71 KYFHEKYDAAPSAAFWTTPYGGNEIPLELIKKKALEDSINQKIRQILAKE---------- 120
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
E+ + G F+ + R + N + M +
Sbjct: 121 -QEVLPDISYAGFIQNFNLE--NQRRQQAIKNHQVIFGPAQYTEEAYYEYMMANTALSVK 177
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
N L++ + + Y R A A L+ F N ++
Sbjct: 178 NHLMEHDWKPSEQQLITFYEANKRRLYHAPATVKVRQLSLSFLDANRNVDTLLKTQVKRK 237
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ EK ++ + ++ + + V +A + +
Sbjct: 238 IEKAREKISSGISFEQAVKDIKQDDRVTEEVYNLDSYRHNVRSPVAQASADLLPGEVSEI 297
Query: 296 FIQLAEEQ 303
+
Sbjct: 298 IEENGRFY 305
Score = 38.3 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 30/332 (9%), Positives = 73/332 (21%), Gaps = 14/332 (4%)
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
D + + I +I + A + +
Sbjct: 37 QTHHEDAYIATVDGVEIHVSEFQRAIDANRAGIIKYFHEKYDAAPSAAFWTTPYGGNEIP 96
Query: 364 FQEVKKDIANQMRITKASEKVK-------EDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ +KK K + + + + + I P
Sbjct: 97 LELIKKKALEDSINQKIRQILAKEQEVLPDISYAGFIQNFNLENQRRQQAIKNHQVIFGP 156
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARD 476
+ + L K +
Sbjct: 157 AQYTEEAYYEYMMANTALSVKNHLMEHDWKPSEQQLITFYEANKRRLYHAPATVKVRQLS 216
Query: 477 RKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINR 536
+ +V KT + + E G +F K++ T ++
Sbjct: 217 LSFLDANRNVDTLLKTQVKRKI------EKAREKISSGISFEQAVKDIKQDDRVTEEVYN 270
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV-QEKDKFISYLT 595
+D+ V ENG Y++ + ++G D +
Sbjct: 271 LDSYRHNVRSPVAQASADLLPGEVSEIIEENGRFYLMQCMEKDQLGSKYLAFDGIREQVL 330
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ + + + + V +++ L + +L
Sbjct: 331 KDYIDNQYEQYVRERLTDAKVVLNEELYRNFL 362
>gi|15616760|ref|NP_239972.1| survival protein SurA precursor [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|11387168|sp|P57240|SURA_BUCAI RecName: Full=Chaperone surA homolog; Flags: Precursor
gi|25403557|pir||B84946 peptidylprolyl isomerase (EC 5.2.1.8) surA [imported] - Buchnera
sp. (strain APS)
gi|10038823|dbj|BAB12858.1| survival protein surA precursor [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 430
Score = 45.6 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 33/419 (7%), Positives = 107/419 (25%), Gaps = 16/419 (3%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + + S + L + + + +S L +K+L+ L+ + +
Sbjct: 26 DNITAIVNDEIILNSD----VNEILVFLKKSKKKFIIP--LKSDFLKEKVLEKLIVDSLI 79
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q + ++ I L L R N Y + K+
Sbjct: 80 LQEANSKNINITKEQIDTVIKNIALKKHISV---DHFKKQILLRNIKNPSYYDNFIKKIE 136
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + + + +Q F+ D ++ I PS + +
Sbjct: 137 ILLKMKTIQDYELHKRINISEQEVNTIFKKLIKDNEKFKKINLSYILLPSLKQDSDNAVR 196
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
+ ++ + + + + + +
Sbjct: 197 NRTKIAENIVYKLKKGYDFEKLLIECEKNKSTFIVKKMFWKPLLDIQNSFFKTLNIFKKG 256
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
Q K + ++ +++ + + ++ ++ +
Sbjct: 257 QILGPIVGDKGLYILKVNDIHHKKENIVTEFYMQHCLIKPSVILTNTEAKKKIFN----- 311
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGT 399
I+ + I + + + + K ++ + + +
Sbjct: 312 --IYENIKKGIYTFDDAVKNLSDDYYSSNKKGDLGWISKESLGFDLNKKFLILDKNEISE 369
Query: 400 SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ +D VD K K + + ++ + + +D + + +
Sbjct: 370 PVKSNWGWHIFKILDRRQVDAFYKLKKNQAFNIVLNQKIISEKNHWIEDLKNTAYIEII 428
>gi|229918171|ref|YP_002886817.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium sp.
AT1b]
gi|229469600|gb|ACQ71372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium sp.
AT1b]
Length = 333
Score = 45.6 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 38/319 (11%), Positives = 83/319 (26%), Gaps = 14/319 (4%)
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
S + D FS + + +N + + V
Sbjct: 1 MSNGMTNEPKKQDKKFSTGALVGASAIALIIGAGGTYAATNAGGGESDNSAVVTYKGGEI 60
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
R A +L + +++ + + +E
Sbjct: 61 TRGEIADMSYDRMVPQLAFQETMNALLEKEYGDQVDQEKVDEEFSKTEEQFNSEEEFEQA 120
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVK 494
++ + + L V + V +E ++ EV +
Sbjct: 121 IQQAGMSGTEEFKEALRGQMLVDAAKSKLVDVTDEEIEAQFAKENVEVEASHILVETEEE 180
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVF 553
+ + +G +F ++ K + + F
Sbjct: 181 AQDIIKE---------LNDGADFAELAKEKSTDTGSGEKGGELGFFSAGAMVPEFEEYAF 231
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDL-LDSVIAY 609
V P+++ + V KVT+ K EKD+ L + + + + A
Sbjct: 232 KEDVVGKISEPVQSQFGFHVIKVTDRKEKDLKLEDEKDRIREELAAEKSASVDANKIYAE 291
Query: 610 LKSQYSVTVHDNLIQRYLD 628
L +Y+V V D ++ D
Sbjct: 292 LIEKYNVDVKDAKAEQQFD 310
Score = 38.3 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 30/257 (11%), Positives = 83/257 (32%), Gaps = 12/257 (4%)
Query: 163 DVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKD 222
D+ + ++ + ++ V S Q ++
Sbjct: 67 DMSYDRMVPQLAFQETMNALLEKEYGDQVDQEKVDEEFSKTEEQFNSEEEFEQAIQQAGM 126
Query: 223 NYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKE 282
+ + + + K K ++++++E++A++ K + + ++ ++E
Sbjct: 127 SGTEEFKEALRGQMLVDAAKSKLVDVTDEEIEAQFAKENVEVEA------SHILVETEEE 180
Query: 283 ADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
A + + L G F +LA+E+ LG FS + + F G
Sbjct: 181 AQDIIKELNDGADFAELAKEKSTDTGSGEKGGELGFFSAGAMV-PEFEEYAFKEDVVGKI 239
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALG 398
+ + FG+ + V++ + ++ K I ++ K++
Sbjct: 240 SEPVQSQFGFHVIKVTDR-KEKDLKLEDEKDRIREELAAEKSASVDANKIYAELIEKYNV 298
Query: 399 TSMDEISRREKIVSIDL 415
D + ++ +
Sbjct: 299 DVKDAKAEQQFDAVKEA 315
>gi|168188090|ref|ZP_02622725.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum C str.
Eklund]
gi|169294073|gb|EDS76206.1| peptidil-prolyl cis-trans isomerase [Clostridium botulinum C str.
Eklund]
Length = 247
Score = 45.6 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 28/247 (11%), Positives = 69/247 (27%), Gaps = 13/247 (5%)
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
++ + + + + + L GK +++ + +
Sbjct: 1 MENKVLATVNGKQITENDIQAAIKRFPQEQQAYLATEQGKKQLLEQLISFEVFYDYGKEM 60
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD--------VKKDWKTVKT 495
+ + + + + I + +EV V + + K
Sbjct: 61 EYDKTKEYTTAIEIMERDALTQLSVNKVISQVELTDKEVEDYYNANKDNFVVGEMISAKH 120
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
+ + + V E K G F D N + F+
Sbjct: 121 ILVDTEELAKEVTEEIKNGMTFSDAATKYSTCPSKAQGGNLGKFGKGQMVPEFEEAAFNL 180
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK----FISYLTQMMNKDLLDSVIAYLK 611
+ + P++ Y + +V + + + D+ + L Q K + + LK
Sbjct: 181 EIGKI-SEPVKTQFGYHLIEVEDKQEATKKSFDEVRDLIRTNLLQERQKVKYATTVEELK 239
Query: 612 SQYSVTV 618
+Y+V V
Sbjct: 240 KKYNVEV 246
>gi|167038249|ref|YP_001665827.1| hypothetical protein Teth39_1856 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116657|ref|YP_004186816.1| hypothetical protein Thebr_1904 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166857083|gb|ABY95491.1| hypothetical protein Teth39_1856 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929748|gb|ADV80433.1| hypothetical protein Thebr_1904 [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 241
Score = 45.6 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 14/176 (7%), Positives = 40/176 (22%), Gaps = 12/176 (6%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + + + F L + ++ +L+ LV
Sbjct: 62 NEGDVIAEANGIPIYKNEFELRKGLTLA------------SEGQVNDINNFVLNKLVREK 109
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ L+ + I + + + + A E+ + D+
Sbjct: 110 VKEYLAMKYNLKVSEDEINSYIEKEKQQFKEFPEAEGKLKELISASGMRYEEYWNDYERY 169
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
+ R + + + + K+ V A +
Sbjct: 170 NVKRMLLFDKLYNAIINEGIKNGELKKTDKMTIEVQNEYKKYFDNIIDQYVKQAKI 225
>gi|225568647|ref|ZP_03777672.1| hypothetical protein CLOHYLEM_04725 [Clostridium hylemonae DSM
15053]
gi|225162575|gb|EEG75194.1| hypothetical protein CLOHYLEM_04725 [Clostridium hylemonae DSM
15053]
Length = 350
Score = 45.6 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 37/130 (28%), Gaps = 13/130 (10%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV-----------PFSSFINSWKQELG 65
L+ L G+ S+ + V +VG +++ + + + LG
Sbjct: 5 VLLFAITGLLAAGVLTGCGSIDENDVVATVGEKEITADVANFFARYTQAQYETYYSGYLG 64
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ + +L+ L L++ + D + + F
Sbjct: 65 D--DMWNTDASEGETYEEFVKDSVLNELEKMIVLEEHMGDYDVSLTEEEKAVIEKSAKAF 122
Query: 126 HGKDNKFSHD 135
+ S +
Sbjct: 123 DEANTLESKE 132
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 7/108 (6%)
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+F + G T D+E+ D + + V IE V
Sbjct: 218 DDFSALATEQGVEAQTAT----FDSESTSPAEDVVKAADALGEGEV-TGVIETDSGCYVA 272
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
KVT+ + + Q L + + V V+ +
Sbjct: 273 KVTSLLDREATDSK--KESIVQERKTKLYNDTCDKWIKKAGVKVNKGV 318
>gi|332288953|ref|YP_004419805.1| peptidyl-prolyl cis-trans isomerase SurA [Gallibacterium anatis
UMN179]
gi|330431849|gb|AEC16908.1| peptidyl-prolyl cis-trans isomerase SurA [Gallibacterium anatis
UMN179]
Length = 313
Score = 45.6 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 12/127 (9%), Positives = 38/127 (29%), Gaps = 3/127 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ + + L + F K L+ +D +
Sbjct: 187 QAKKQLSSLRSDIIAGKTTFAAAAKTYSKDYLSGANGGSLDWNFPEVYEPEFQSMVKNSK 246
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS---VIAYLKSQY 614
+ V P + + + +V + + G ++ Q++N+ +++ + L+
Sbjct: 247 KGVISQPFKTKYGWHILEVVDKRDGDKTKEAYMQKAYQQVVNQQAMEASKDWVKTLRKSA 306
Query: 615 SVTVHDN 621
+ +
Sbjct: 307 DIKILQK 313
>gi|208434128|ref|YP_002265794.1| peptidyl-prolylcis-transisomerase C [Helicobacter pylori G27]
gi|208432057|gb|ACI26928.1| peptidyl-prolylcis-transisomerase C [Helicobacter pylori G27]
Length = 299
Score = 45.6 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 54/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
E + R +V + + A+ + + F + + + K
Sbjct: 83 EQAIRTALVENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKIQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQ-----LFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
++ + M+ + L I L+ + ++
Sbjct: 258 VTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKIVINK 299
>gi|313681753|ref|YP_004059491.1| ppic-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
kujiense DSM 16994]
gi|313154613|gb|ADR33291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfuricurvum
kujiense DSM 16994]
Length = 280
Score = 45.6 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 26/189 (13%), Positives = 52/189 (27%), Gaps = 7/189 (3%)
Query: 435 YKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV--LTDVKKDWKT 492
+Q L + + + V KE D EE +
Sbjct: 88 EYKQELEALVNRLKVQLAAKVWEQQQFEAIKVDAKEVKAYFDANPEEFVDKEKIHARHIL 147
Query: 493 VKTAEEVSSKANQLV-LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
VKT E S + L K F K+ +
Sbjct: 148 VKTEGEAQSIIKSMKGLSGDKLRNEFIAQAKSKSTGPSAAKGGDLGYFPRGQMVPSFNDA 207
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIA--- 608
F+ + P+++ Y V + + K D+ +++ Q + D + +
Sbjct: 208 AFAMKEGAISSTPVQSQFGYHVIYIEDKKPAKKLGFDEVKNFIEQRLKMDKFKATMEKKM 267
Query: 609 -YLKSQYSV 616
L+++ +
Sbjct: 268 SDLRAKAKI 276
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 15/247 (6%), Positives = 59/247 (23%), Gaps = 10/247 (4%)
Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE 104
+V ++ + G + + L ++I++ +++ + +
Sbjct: 26 TVNGDEITSDEVNKVL------MEGTQGRFDSLPADKQNELRQRIIEGMIAQELVYDDAQ 79
Query: 105 DIGLEADHG--RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK--MLS 160
IG+ + + + F + + + + +
Sbjct: 80 KIGVLDSKEYKQELEALVNRLKVQLAAKVWEQQQFEAIKVDAKEVKAYFDANPEEFVDKE 139
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
+ + V + ++ K + ++I + L +
Sbjct: 140 KIHARHILVKTEGEAQSIIKSMKGLSGDKLRNEFIAQAKSKSTGPSAAKGGDLGYFPRGQ 199
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
+ + + ++ + K + + ++L
Sbjct: 200 MVPSFNDAAFAMKEGAISSTPVQSQFGYHVIYIEDKKPAKKLGFDEVKNFIEQRLKMDKF 259
Query: 281 KEADEAF 287
K E
Sbjct: 260 KATMEKK 266
>gi|315501933|ref|YP_004080820.1| hypothetical protein ML5_1129 [Micromonospora sp. L5]
gi|315408552|gb|ADU06669.1| hypothetical protein ML5_1129 [Micromonospora sp. L5]
Length = 256
Score = 45.6 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 25/93 (26%), Gaps = 8/93 (8%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMI----SQKIGFVVNSERARSVGLDKKILD 91
S VG + ++ + + RS + +L+
Sbjct: 24 GRSAPDVAAYVGDSRYSVDRVDAIYEDAQRQYAEAVRSQSPQTPSPAELRSSVTRQDVLN 83
Query: 92 NLVSGATLDQFIEDIGLEADH----GRVWGEIA 120
LV+ + D GL+ ++ +
Sbjct: 84 LLVAIDLGKRVAADKGLQVTDQISPEQIQQALR 116
>gi|261839036|gb|ACX98801.1| Protein maturation protease (Peptidylprolyl isomerase)
[Helicobacter pylori 52]
gi|317181484|dbj|BAJ59268.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
F57]
Length = 299
Score = 45.6 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 54/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + R +V + + A+ + + F + + + K
Sbjct: 83 DQAIRTALVENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKIQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQ-----LFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
D+ + M+ + L I L+ + ++
Sbjct: 258 VTYTYDQAKPTIKGMLQEKLFQERMNQKIEELRKHAKIVINK 299
>gi|302865388|ref|YP_003834025.1| hypothetical protein Micau_0885 [Micromonospora aurantiaca ATCC
27029]
gi|302568247|gb|ADL44449.1| hypothetical protein Micau_0885 [Micromonospora aurantiaca ATCC
27029]
Length = 256
Score = 45.2 bits (104), Expect = 0.029, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 25/93 (26%), Gaps = 8/93 (8%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMI----SQKIGFVVNSERARSVGLDKKILD 91
S VG + ++ + + RS + +L+
Sbjct: 24 GRSAPDVAAYVGDSRYSVDRVDAIYEDAQRQYAEAVRSQSPQTPSPAELRSSVTRQDVLN 83
Query: 92 NLVSGATLDQFIEDIGLEADH----GRVWGEIA 120
LV+ + D GL+ ++ +
Sbjct: 84 LLVAIDLGKRVAADKGLQVTDQISPEQIQQALR 116
>gi|297568379|ref|YP_003689723.1| hypothetical protein DaAHT2_0398 [Desulfurivibrio alkaliphilus
AHT2]
gi|296924294|gb|ADH85104.1| hypothetical protein DaAHT2_0398 [Desulfurivibrio alkaliphilus
AHT2]
Length = 559
Score = 45.2 bits (104), Expect = 0.029, Method: Composition-based stats.
Identities = 50/497 (10%), Positives = 127/497 (25%), Gaps = 49/497 (9%)
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ G+ S +++ + + + + +
Sbjct: 53 IDGVEYSTEDFKGWWQYWNDEGLAVPPTPDLYIDWLLLVREAERMELAGDPSFQRQTRVF 112
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ ++ +I+++ +L+A+YEK +Y + A
Sbjct: 113 LTSRALLMLKNEAVNSRIKVTEADLKAQYEK---EYLPRWQVERLHFRNAEEAVAAWEEL 169
Query: 289 SLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGY 348
LA E + ++ + A+ IF+ +KG+ G
Sbjct: 170 QAGNLTVAELLAREPDEGGPVTRQVNWHRPQGIAPGWAE-IFNNMEKGEVADPEKHHGGL 228
Query: 349 VIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKA-----------SEKVKEDYKRLEEFLA 396
++ H+ +K FQ +++ + + +A + E ++ L
Sbjct: 229 MLFHLKEVKGGDAEDFQRMRESLHRDVWKEQEAALTRQLLAELRRKYQVEINEQRLAELD 288
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE------------------- 437
+ D + + L + + +++ P
Sbjct: 289 INAPDDAFGDEVLVATSRQNLTERDFIAMVRRDMTMRPDAAHAAFDEEKAAEIKDRVVDG 348
Query: 438 ---QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK-ESIPARDRKLEEVLTDVKKDWKTV 493
Q L K ++ ++ +V D+ +
Sbjct: 349 FIAQSLTNWESLARGYEKREPFKGEYDFHVNHRLSVTLERRLFADQVKVDDDMVRRHYEE 408
Query: 494 KTAEEVSSKANQLVLEYSKEG---KNFRDIGKNLGASLLTTNQINRMDNENKF----FGY 546
A +L + + EG + + ++ S R +
Sbjct: 409 NLAHFSRPAHVRLNIITNDEGPVNQVWAEVVAGKEFSRAVQEHFGRRIPGQEVPINHLDP 468
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD---KFISYLTQMMNKDLL 603
V G VV + P+ + L + L
Sbjct: 469 RVRGVVEKLAPGETSAPFDAQGSRVVVHLIDRVPENPLPFERVAGNIRDRLVREKTAQLR 528
Query: 604 DSVIAYLKSQYSVTVHD 620
S + L+++ + ++D
Sbjct: 529 QSYLDQLRARSRIEIND 545
Score = 42.9 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM----MNKDLLDS 605
+++F+ + P ++ ++F + K G ++ + L + L
Sbjct: 207 AEIFNNMEKGEVADPEKHHGGLMLFHLKEVKGGDAEDFQRMRESLHRDVWKEQEAALTRQ 266
Query: 606 VIAYLKSQYSVTVHDNLI 623
++A L+ +Y V +++ +
Sbjct: 267 LLAELRRKYQVEINEQRL 284
>gi|220928200|ref|YP_002505109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
cellulolyticum H10]
gi|219998528|gb|ACL75129.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
cellulolyticum H10]
Length = 347
Score = 45.2 bits (104), Expect = 0.029, Method: Composition-based stats.
Identities = 19/183 (10%), Positives = 46/183 (25%), Gaps = 13/183 (7%)
Query: 15 KIFLVVLFVPFLIWGL-------SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
K ++ V ++ + + + + + V VG K+ + + + MI
Sbjct: 4 KFVNALITVAMVLTSIIPASNTFAATAKTATPETHVAKVGTDKISKEEYNFFLRDAISMI 63
Query: 68 SQKIG------FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
++ S K LDN+V +D + +
Sbjct: 64 QSYFNSYNVDWNAKINDMKASEYAKKIALDNIVDFKIQLSKAKDAKITLTKNEMDEFNGN 123
Query: 122 SPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+ + D G ++ Y + ++ L +
Sbjct: 124 MNSYLNSLASTTKDQENIIKNETGFTLAQFKSFYNNVYIVRKFASETQKKFNCTDTELKK 183
Query: 182 AKR 184
Sbjct: 184 YYN 186
>gi|87306930|ref|ZP_01089076.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Blastopirellula
marina DSM 3645]
gi|87290303|gb|EAQ82191.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Blastopirellula
marina DSM 3645]
Length = 369
Score = 45.2 bits (104), Expect = 0.029, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 39/165 (23%), Gaps = 11/165 (6%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + + G S+ + GL +L+ L+ Q+I
Sbjct: 60 AFVNNAPIYDVDVERAAAKAFGAASK-------GDLDLPFGLKSSVLNRLIDRELALQYI 112
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
E V EI+R K + L + + ++
Sbjct: 113 ESTDFRPSSSEVNREISRVKKELEARGK----SLDAYLTENHTDMRMLRRRIAWNIAWPR 168
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + F R + I+L
Sbjct: 169 YADASLTDDNLRRYFELHRRDFDGTQRKLSQILLTTNETEPSQVV 213
>gi|240949661|ref|ZP_04753996.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus minor
NM305]
gi|240295919|gb|EER46595.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus minor
NM305]
Length = 317
Score = 45.2 bits (104), Expect = 0.029, Method: Composition-based stats.
Identities = 26/278 (9%), Positives = 74/278 (26%), Gaps = 5/278 (1%)
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
++ + + +K + +K + ++ + +++EI
Sbjct: 35 DGNMIMESQVARALGKKANTEANRKAALESIIDEMLVQKAIQQSGVKVDYRRVDQAIEEI 94
Query: 405 SRREKIV-SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS-KDHTVALPDGS 462
+ R + L +D+ G + R + V +
Sbjct: 95 AARNGLTYGQLLDALDYQGISLNQYRQQIAQQMMMEAVRHQSIGKSIQVNPEEVRAQAQA 154
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
M E ++ + V + +K N ++ + F + K
Sbjct: 155 LMAKDKAAGKLKAVSGTEPRISHILIKTTPVLNDAQAKAKLNSIIADIKAGKTTFEEAAK 214
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
++ + + + + P ++ + + KVT+S+ G
Sbjct: 215 ANSVDYVSAADGGDLGFNFLDIYDPAFANAAAKAKQGQITAPFKSQFGWHILKVTDSRQG 274
Query: 583 PVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
E + L + + L+ ++
Sbjct: 275 DRTEDAYAQRAYEQLANQQAEAASKDWVKALRKTANIQ 312
Score = 42.2 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 55/173 (31%), Gaps = 20/173 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L V F+ + V +V + S + ++A
Sbjct: 9 LLVAFVATLGLSQSLFAAEERVVATVDGNMIMESQVARAL----------------GKKA 52
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ K L++++ + + I+ G++ D+ RV I +G ++ +
Sbjct: 53 NTEANRKAALESIIDEMLVQKAIQQSGVKVDYRRVDQAIEEIAARNG----LTYGQLLDA 108
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
L +GI+ +Y + + V +G N +A+ +
Sbjct: 109 LDYQGISLNQYRQQIAQQMMMEAVRHQSIGKSIQVNPEEVRAQAQALMAKDKA 161
>gi|57234034|ref|YP_181920.1| protein export protein, putative [Dehalococcoides ethenogenes 195]
gi|57224482|gb|AAW39539.1| protein export protein, putative [Dehalococcoides ethenogenes 195]
Length = 421
Score = 45.2 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 44/407 (10%), Positives = 108/407 (26%), Gaps = 29/407 (7%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSFINSW 60
+K + + L V+ + ++ G+ + V++VG K S F
Sbjct: 24 QKKRQRIIFATGLSVIGIVLVLVGMGVYKGWYVDQYKPMHTVVLTVGDTKYNVSYF---- 79
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKI-LDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ + G + ++I L+ L+ ++G + I
Sbjct: 80 ---VDALKHFTGGDSTYAYYFIDAVAERIQLNQLIVEK-----AAEMGYTVSEDEIDASI 131
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ L D+ + L + + + + + + + M + ++ +L
Sbjct: 132 EENSLDDVPAV---RDIVRASLLISTLKTEYFDPQVPQNAEQREALAMLLESESAASEVL 188
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ L + Y + +
Sbjct: 189 AGITTDEEFAAKAAELSLESNTKTDEGTIDFRPANTISSLYGSEILEQYIFSTDSYDYTL 248
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ + + E+ ++ P+Q+ A E L+ G+ + L
Sbjct: 249 LQDADVSKQRAY----WLIEVLERNADSGQIHALGMLLPSQEVALEVKAKLEAGEDWGDL 304
Query: 300 AEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
A E + + + S +P+ A+ I
Sbjct: 305 AVEYSQLANVEDNRGDMDWISSTSVPENVADIIFADDAELNTVLDPIQDDTNTTRGGCWI 364
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
++ +E+ +D + K E + + L S D
Sbjct: 365 VRLKSVDENRELSEDDRTLLINDKVDEWTTDLKNANLDRLTNTFSDD 411
>gi|147902597|ref|NP_001082472.1| structural maintenance of chromosomes protein 5 [Xenopus laevis]
gi|82132868|sp|Q805A1|SMC5_XENLA RecName: Full=Structural maintenance of chromosomes protein 5;
Short=SMC protein 5; Short=SMC-5
gi|28316402|dbj|BAC56936.1| structural maintenance of chromosomes protein 5 [Xenopus laevis]
Length = 1065
Score = 45.2 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 36/476 (7%), Positives = 131/476 (27%), Gaps = 12/476 (2%)
Query: 59 SWKQELGMISQKIGFVVN-SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++ N + + + + L+ + Q I D ++ +
Sbjct: 254 EYENVRQQYEDVKKSCGNFKDELKKLQGLQAPLNQKIQQIEKRQRIIDEKIKDKAIEIKE 313
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ + + ++ + K + + + S +
Sbjct: 314 TSKNCKQKQDELEQKDKQIEEV---QQSLRVKRDAEQERQKKIGNIRKMIEDWEKELSAM 370
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + ++ + D+ + + ++ ++ + + + + +A K+ ++
Sbjct: 371 TNQENIQPEMDSINTDFRRIQDDKANIESEMTDLRMEKDNLEREKKEKANRIKQFDNLMN 430
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
EK K++ ++NK+++ + + + + + + ++
Sbjct: 431 LKEEKLKRMYSDTYNAVVWLKENKDRFKNRVCQPMMLEINMKDQRHAKYVENHIPMNDMK 490
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
E + + K+ + ++ A++ P+ +++ +
Sbjct: 491 AFVFESQEDMQVFLKEVRDKQNLRVNTVCAPQEPYAEQRPKRPITDLKQYGFFSYLRELF 550
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ + + K ++E E K L
Sbjct: 551 DAPYPVMNYLCYQYKVHEVPVGTEQTRSMIEKVIKETDLRQMYTAEEKYVTKKSVYSQKL 610
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ + + E+ V + K T+ Q+ E + DR
Sbjct: 611 ISSNVSLKGAQFLTVTVDAEERQQVVDQLKEIERKCSTIETSME-----QLAERQRSLDR 665
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKAN---QLVLEYSKEGKNFRDIGKNLGASLLT 530
+ E+ K + ++ K + + ++ N ++ + +
Sbjct: 666 RDNELRLRKKTILEMKTKKRQLEQKISTKYDSLNRLEQDNLNLEEVQQQANNRIKN 721
>gi|328551773|gb|AEB22265.1| hypothetical protein BAMTA208_00365 [Bacillus amyloliquefaciens
TA208]
gi|328910033|gb|AEB61629.1| putative protein secretion PrsA [Bacillus amyloliquefaciens LL3]
Length = 296
Score = 45.2 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 16/178 (8%), Positives = 52/178 (29%), Gaps = 25/178 (14%)
Query: 10 RTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
RT + I +L + L+ + + S ++ ++G + + ++ + E G
Sbjct: 4 RTLLTIIVAALLVCSVAVAYKLTKSQAAGSSEESIATIGDKHITRQDWMKKMEDEYG--- 60
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE---IARSPLF 125
K L+++++ +++ + L + + E I
Sbjct: 61 ------------------KSTLEDMINTQVVEELAKKNKLTVSNSELEREFLLIKAVNNS 102
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+D+ + + ++ + E+ + +
Sbjct: 103 FYEDSHITEKEWKDQIRYNILLEELLTKDIDISDKEMQSFYNKNKELYQFDDSYRIRH 160
>gi|319957104|ref|YP_004168367.1| ppic-type peptidyl-prolyl cis-trans isomerase [Nitratifractor
salsuginis DSM 16511]
gi|319419508|gb|ADV46618.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitratifractor
salsuginis DSM 16511]
Length = 287
Score = 45.2 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 41/132 (31%), Gaps = 9/132 (6%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
S S + V K+ + + + + KK+LD L+
Sbjct: 20 SASDVIAVVNGHKITKAEVNTFLR------QSMPNQPITYDMLD-PKTKKKVLDGLIETE 72
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
L + + G+E + + ++ N ++ D F + E ++ Y H K
Sbjct: 73 ILAEAAQKAGVEKNPE--FQQMLDMAKKKLMINAWAKDEFKKIIVSESEAKEFYQKHQDK 130
Query: 158 MLSRTDVVGMFV 169
V +
Sbjct: 131 FTRPAQVHARHI 142
Score = 39.1 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 24/208 (11%), Positives = 56/208 (26%), Gaps = 12/208 (5%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
AG + + + ++ L D K + +
Sbjct: 75 AEAAQKAGVEKNPEFQQMLDMAKKKLMINAWAKDEFKKIIVSESEAKEFYQKHQDKFTRP 134
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQI 534
+ VK + K + +++ + + + F ++ K
Sbjct: 135 AQVHARHI--LVKSEKKAQEIIDQLKGLKGEALQKR------FIELAKKESTGPTGPKGG 186
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKF 590
+ F+ + P++ + V V + K KD+
Sbjct: 187 DLGYFGKDQMVLPFSKAAFALNKGEITTKPVKTQFGWHVIYVEDKKPAQTIPFDAVKDRV 246
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
I+ L Q + + LK + S+T+
Sbjct: 247 IAALKQQRFAEKMKKETELLKKKASITI 274
>gi|317179979|dbj|BAJ57765.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
F32]
Length = 299
Score = 45.2 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 54/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + R +V + + A+ + + F + + + K
Sbjct: 83 DQAIRTALVENEAKTERLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKVQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQ-----LFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKIPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
D+ + M+ + L I L+ + ++
Sbjct: 258 VTYTYDQAKPTIKGMLQEKLFQERMNQKIEELRKHAKIVINK 299
>gi|182438226|ref|YP_001825945.1| putative lipoprotein [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178466742|dbj|BAG21262.1| putative lipoprotein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 218
Score = 45.2 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 6/133 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
A + S VG +++ S+ + +Q+ +S L++ L
Sbjct: 23 SACGNQSHPGAAAVVGGERIEVSTVQDRAADVRS--AQENSPEAAQLVNKSGQLNRAKLH 80
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
L+ G LD+ D G+ + S G + +F L + + +
Sbjct: 81 GLIFGRILDRAAADAGVTVTRKEIQEMRKASGAQQGGEERFE----AMMLQQRWVAPDQI 136
Query: 152 IDHYTKMLSRTDV 164
+ + +
Sbjct: 137 DADMRQEVQLPKL 149
>gi|319793857|ref|YP_004155497.1| ppic-type peptidyL-prolyl cis-trans isomerase [Variovorax paradoxus
EPS]
gi|315596320|gb|ADU37386.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Variovorax paradoxus
EPS]
Length = 261
Score = 45.2 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 2/131 (1%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGY 546
K++K E +A +++ + K+G F DI K + +D F
Sbjct: 132 KEYKARHILVETEDQAKKIMADL-KKGAKFEDIAKKQSKDPGSGANGGDLDWANPASFVP 190
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ + PI+ Y + +V + + + + ++ +TQ + + L
Sbjct: 191 EFSEAMIKLKKGETTPAPIKTQFGYHIIRVDDIRQAQLPKLEEVKPQVTQQLQQQRLQKY 250
Query: 607 IAYLKSQYSVT 617
L+++ V
Sbjct: 251 QEELRAKAKVE 261
>gi|229195463|ref|ZP_04322231.1| Foldase protein prsA 2 [Bacillus cereus m1293]
gi|228588003|gb|EEK46053.1| Foldase protein prsA 2 [Bacillus cereus m1293]
Length = 285
Score = 45.2 bits (104), Expect = 0.030, Method: Composition-based stats.
Identities = 31/264 (11%), Positives = 80/264 (30%), Gaps = 14/264 (5%)
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
K D T ++ + K+L++ + +++ + D +
Sbjct: 21 CGQKNDSDTVATATDSTITKSDFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDDDVDKEL 80
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
K K +K L + L + I E ++V
Sbjct: 81 QKAKNQYGDQFKNVLRNNGLKDEADFKNQIKFKLAMNEAIKKSITE---------KDVKD 131
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF- 543
K + K ++A ++ + G +F ++ K LL+ + + N
Sbjct: 132 HYKPEIKASHILVSDENEAKEIKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGR 190
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLTQMMNKD- 601
+ + + V + +++ ++ P E KD L + D
Sbjct: 191 MAPEFETAAYKLKVGQISNPVTSPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERISDP 250
Query: 602 -LLDSVIAYLKSQYSVTVHDNLIQ 624
++ + ++ ++D+ ++
Sbjct: 251 IFGKKLLQNELKKANIKINDSELK 274
>gi|222474770|ref|YP_002563185.1| hypothetical protein AMF_031 [Anaplasma marginale str. Florida]
gi|255002737|ref|ZP_05277701.1| hypothetical protein AmarPR_00174 [Anaplasma marginale str. Puerto
Rico]
gi|255003870|ref|ZP_05278671.1| hypothetical protein AmarV_00169 [Anaplasma marginale str.
Virginia]
gi|222418906|gb|ACM48929.1| Conserved hypothetical protein [Anaplasma marginale str. Florida]
Length = 401
Score = 45.2 bits (104), Expect = 0.031, Method: Composition-based stats.
Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 10/79 (12%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + K A + ++L +LV + L+
Sbjct: 29 AVVDGKAITSLDVSRRTKANAFFYK----------TAHAGSDQGEVLQSLVDESVLELEA 78
Query: 104 EDIGLEADHGRVWGEIARS 122
+++G+ + E ++
Sbjct: 79 KELGISVGKRELEAEASKM 97
>gi|217033999|ref|ZP_03439421.1| hypothetical protein HP9810_891g3 [Helicobacter pylori 98-10]
gi|216943507|gb|EEC22958.1| hypothetical protein HP9810_891g3 [Helicobacter pylori 98-10]
Length = 299
Score = 45.2 bits (104), Expect = 0.031, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 54/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + R +V + + A+ + + F + + + K
Sbjct: 83 DQAIRTALVENEAKTERLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKIQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQ-----LFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKIPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
D+ + M+ + L I L+ + ++
Sbjct: 258 VTYTYDQAKPTIKGMLQEKLFQERMNQRIEELRKHAKIVINK 299
>gi|227530453|ref|ZP_03960502.1| peptidylprolyl isomerase [Lactobacillus vaginalis ATCC 49540]
gi|227349631|gb|EEJ39922.1| peptidylprolyl isomerase [Lactobacillus vaginalis ATCC 49540]
Length = 310
Score = 45.2 bits (104), Expect = 0.031, Method: Composition-based stats.
Identities = 35/301 (11%), Positives = 79/301 (26%), Gaps = 40/301 (13%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
S+ +A I L +P G S V + K+ + N K
Sbjct: 2 KSKKLIAMIACATLVLPLAACG----------SKAVATTSGGKITQEEYYNEMKTTTNG- 50
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
K++L ++ L+ ++ G + +V + +G
Sbjct: 51 -------------------KQVLQQMILDKVLE---KEYGKQVSDKQVNAQYNTYKNQYG 88
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
F + L ++G+ EK+ L V + +
Sbjct: 89 SQ-------FSAVLQQQGLTEKKLKQQIRSNLCLEAAVRSYTHITNAQINKQWKKYEPKV 141
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
+ + ++ ++ + F+K + + + +
Sbjct: 142 QTAEILVGSKDDAQSIIDQLNNSDHPYKTFKKLVKSKSTDASTKNAGGKVAAFDNTSTSV 201
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
S + A K E P +V + + +S Q+ +E+
Sbjct: 202 DSAYKKAAFKLKTGEYTTEPVKTDDGYVVIYMIEHPAKGKKSQHINDLKTQIVQEKMNDS 261
Query: 308 S 308
Sbjct: 262 K 262
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 28/218 (12%), Positives = 68/218 (31%), Gaps = 10/218 (4%)
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
+ K V + V + K + + ++ + ++
Sbjct: 72 SDKQVNAQYNTYKNQYGSQFSAVLQQQGLTEKKLKQQIRSNLCLEAAVRSYTHITNAQIN 131
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG---KNFRDIGKNLGASLLTTNQ---I 534
+ + +T + A ++ + + K F+ + K+ T N +
Sbjct: 132 KQWKKYEPKVQTAEILVGSKDDAQSIIDQLNNSDHPYKTFKKLVKSKSTDASTKNAGGKV 191
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFIS 592
DN + F P++ YVV + +K Q + +
Sbjct: 192 AAFDNTSTSVDSAYKKAAFKLKTGEYTTEPVKTDDGYVVIYMIEHPAKGKKSQHINDLKT 251
Query: 593 YLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+ Q D L V++ + + +V++ DN ++ +D
Sbjct: 252 QIVQEKMNDSKFLHKVVSNVLKKGNVSIKDNDLKNIMD 289
>gi|124516599|gb|EAY58107.1| probable peptidil-prolyl cis-trans isomerase [Leptospirillum
rubarum]
Length = 289
Score = 45.2 bits (104), Expect = 0.031, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 542 KFFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFK--VTNSKVGPVQEKDKFISYLTQMM 598
+S F P P+++G+ Y V ++ Q ++ +YL
Sbjct: 185 GTVPPKFVSFFFGVPEGSITGPIPLKDGIHYFKIDRSVKGVQLTLDQAREGIRNYLRNRQ 244
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLI 623
NK + +++ +L+S +V +++ +
Sbjct: 245 NKTIYQTLVNHLRSTTTVQINNKAL 269
Score = 40.6 bits (92), Expect = 0.85, Method: Composition-based stats.
Identities = 9/74 (12%), Positives = 21/74 (28%), Gaps = 12/74 (16%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S + VG + +G + + + ++L+ +V + L
Sbjct: 30 DSVLAKVGNTTISQGDLKKKLDS--------MGLASSKD----PNVTSELLNQMVDNSLL 77
Query: 100 DQFIEDIGLEADHG 113
GL+
Sbjct: 78 AMQARKEGLDKTPE 91
>gi|228957536|ref|ZP_04119288.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228802128|gb|EEM48993.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar pakistani
str. T13001]
Length = 285
Score = 45.2 bits (104), Expect = 0.032, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V K + K ++A ++ + G +F ++ K LL+ ++ +
Sbjct: 125 TEKDVKDHYKPEIKASHILVSDENEAKEIKSKLD-AGASFEELAKQESQDLLSKDKGGDL 183
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + + + V + P+++ Y V K+T+ K + KD L
Sbjct: 184 GYFNSGTMAPEFETAAYKLNVGQISN-PVKSSNGYHVIKLTDKKALKPYDEVKDSIRKNL 242
Query: 595 TQMMNKD--LLDSVIAYLKSQYSVTVHDN 621
+ D ++ + ++ ++D+
Sbjct: 243 EEERTADPVFSKKLLQEELKKANIKINDS 271
>gi|253698852|ref|YP_003020041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
gi|251773702|gb|ACT16283.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Geobacter sp. M21]
Length = 336
Score = 45.2 bits (104), Expect = 0.032, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 15/111 (13%)
Query: 18 LVVLFVPFLIWGL-----SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+++L + G S+A + V K+ + F Q
Sbjct: 28 VLLLALCVAATGCKQKAESEANKGPGSGIVLAEVNGAKITDNDFYKE---------QAAL 78
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ K++LD +V + Q + G++ V ++
Sbjct: 79 PPYLKPMTETPEGKKEMLDTMVVRELILQQAKKDGIDNSP-EVASKLEDLK 128
>gi|317179430|dbj|BAJ57218.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
F30]
Length = 299
Score = 45.2 bits (104), Expect = 0.032, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 54/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + R +V + + A+ + + F + + + K
Sbjct: 83 DQAIRTALVENEAKTERLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKIQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQ-----LFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMTPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
D+ + M+ + L I L+ + ++
Sbjct: 258 VTYTYDQAKPTIKGMLQEKLFQERMNQRIEELRKHAKIVINK 299
>gi|258654559|ref|YP_003203715.1| hypothetical protein Namu_4440 [Nakamurella multipartita DSM 44233]
gi|258557784|gb|ACV80726.1| hypothetical protein Namu_4440 [Nakamurella multipartita DSM 44233]
Length = 294
Score = 45.2 bits (104), Expect = 0.032, Method: Composition-based stats.
Identities = 11/101 (10%), Positives = 28/101 (27%), Gaps = 3/101 (2%)
Query: 20 VLFVPFLIWGLS-DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+L F + + ++ +VG Q + + + + Q+ G
Sbjct: 8 LLLSAFAAATVLLTGTACATSATDAATVGDQSISEQAIFDRTASVSEQV-QQAGQPA-PT 65
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ L++ + D G+ V +
Sbjct: 66 QLDLAALNRTQTAAAIRSQLWATAAADAGVVISDAEVNTAM 106
>gi|222529840|ref|YP_002573722.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
bescii DSM 6725]
gi|222456687|gb|ACM60949.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caldicellulosiruptor
bescii DSM 6725]
Length = 340
Score = 45.2 bits (104), Expect = 0.032, Method: Composition-based stats.
Identities = 23/159 (14%), Positives = 54/159 (33%), Gaps = 6/159 (3%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ +++ + + D+ + + AN++V E K+G+NF + K
Sbjct: 178 VNYYNTNKNQFKKRKIIDIFLKVENEEEDARKREIANKIVSEL-KKGENFEKLVKKYSED 236
Query: 528 LLTTNQIN-----RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
+ R + +G +VF V + ++V + +
Sbjct: 237 DSASTTKGIIDYFRKGEKEAEYGSVFEEEVFKLAVGQISNVIKTVKGYHIVKVLDEKYMP 296
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ K++ S L + + I LK + V+ +
Sbjct: 297 LDEVKEEIQSKLMKQKKDEAFRLYIENLKKLSKINVYKD 335
Score = 43.7 bits (100), Expect = 0.085, Method: Composition-based stats.
Identities = 19/261 (7%), Positives = 49/261 (18%), Gaps = 8/261 (3%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA-----RSVGLDKKILDNLVS 95
V+ V ++V + + Q ++ L ++ L
Sbjct: 36 RVVLEVNGEQVTKREYKIRFNALKENAIQFSSRTDILDQVFNGKTYRELLKDELFTILTE 95
Query: 96 GATLDQFIEDIGLEAD---HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
Q + + I F+ + Y
Sbjct: 96 ELLCLQEARKRNINLTKQEEEEIKKYIQELKANEEMRGYFNQYLRKIDSDENHFYRDLYK 155
Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
L + V N +F ++ + N A
Sbjct: 156 TRLINKLYSSITSKTTVSDSEIVNYYNTNKNQFKKRKIIDIFLKVENEEEDARKREIANK 215
Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
+ +K ++ + + E + +E + +
Sbjct: 216 IVSELKKGENFEKLVKKYSEDDSASTTKGIIDYFRKGEKEAEYGSVFEEEVFKLAVGQIS 275
Query: 273 EQLVFPNQKEADEAFQSLKKG 293
+ +
Sbjct: 276 NVIKTVKGYHIVKVLDEKYMP 296
>gi|260428595|ref|ZP_05782574.1| ppic-type ppiase domain protein [Citreicella sp. SE45]
gi|260423087|gb|EEX16338.1| ppic-type ppiase domain protein [Citreicella sp. SE45]
Length = 410
Score = 45.2 bits (104), Expect = 0.033, Method: Composition-based stats.
Identities = 24/194 (12%), Positives = 54/194 (27%), Gaps = 18/194 (9%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
+ V + + + N+ + LV Q
Sbjct: 35 PAIIVDEMVITGYELDQ-----RARMLTLLNAPGNTNDLAR--------EQLVDDRLRLQ 81
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK-MLS 160
++ G+E + ++ + S + FV+ L R G+ E+ + D
Sbjct: 82 AAQNAGIEPTEEEILDGMSE----FAGRAQLSREEFVTALGRAGVAEQTFRDFVRAGAAW 137
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
R+ V FV + S +D+A + +V ++ + +
Sbjct: 138 RSLVQSRFVQQSQVSPAEVDRALAGNGGSSTVRVLLSEIIMPLSPQNVEEVRARAERIAQ 197
Query: 221 KDNYRAPEYKRISY 234
+ + Y
Sbjct: 198 MTSESEFSAQARQY 211
>gi|300691434|ref|YP_003752429.1| peptidylprolyl isomerase; exported protein [Ralstonia solanacearum
PSI07]
gi|299078494|emb|CBJ51147.1| Putative Peptidylprolyl isomerase; exported protein [Ralstonia
solanacearum PSI07]
Length = 265
Score = 45.2 bits (104), Expect = 0.033, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%)
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ K + DEL+ +YEK K ++ + + ++ + +A LK G F +
Sbjct: 101 FEDYVKNSPTTEDELRKQYEKIKTQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEE 160
Query: 299 LAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A Q K + G P + ++ L K + FG+ + + +
Sbjct: 161 IARAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGETTQTPVKTQFGWHVIRLDD 220
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEK 383
+ + +F++VK + M + ++
Sbjct: 221 TRDAKIPAFEDVKPQLLEMMMGDQNWQR 248
>gi|166031177|ref|ZP_02234006.1| hypothetical protein DORFOR_00863 [Dorea formicigenerans ATCC
27755]
gi|166029024|gb|EDR47781.1| hypothetical protein DORFOR_00863 [Dorea formicigenerans ATCC
27755]
Length = 353
Score = 45.2 bits (104), Expect = 0.033, Method: Composition-based stats.
Identities = 27/244 (11%), Positives = 67/244 (27%), Gaps = 22/244 (9%)
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
+ + + E+ + + + + +L + + +A
Sbjct: 97 EKHMEDYDVSITDEDKAMIKETTQQFLNDNSLDDKNLVSGNEKTVNRALTLMAVQQKMRT 156
Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
+ + + ++ D ++ Q K+ ++ +K
Sbjct: 157 AIQAGADTEVSDEEAAQKSM-DYVFISYQTKDDSGNSKDVSDDEKAQLKSQ--------- 206
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
+ + KEG + + + GA++ T D + D I +
Sbjct: 207 -----AEAIASGLKEGGDLNALAEEQGATVQTLT----FDKDTTSPDEDLIKAADALGEG 257
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
Y V KVT+ + S + Q L D + + + + V
Sbjct: 258 ESTDVIETEKGCY-VAKVTSLLDRTATDSK--KSQIVQERQTKLYDDTVKKWRKKADIKV 314
Query: 619 HDNL 622
H +
Sbjct: 315 HKGV 318
Score = 39.8 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 33/112 (29%), Gaps = 13/112 (11%)
Query: 35 FSVSGSSTVVSVGRQKV-----------PFSSFINSWKQELGMISQKIGFVVNSERARSV 83
S+ G TV +V K+ +++ + LG +
Sbjct: 23 GSLKGDETVATVDDTKIDADLANFFARYTQATYETYYSAYLG--EDMWNSDASDGETYEE 80
Query: 84 GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ +L +L L++ +ED + + F ++ +
Sbjct: 81 SVKSSVLKSLEDMILLEKHMEDYDVSITDEDKAMIKETTQQFLNDNSLDDKN 132
>gi|94986748|ref|YP_594681.1| parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
PHE/MN1-00]
gi|94730997|emb|CAJ54360.1| Parvulin-like peptidyl-prolyl isomerase [Lawsonia intracellularis
PHE/MN1-00]
Length = 305
Score = 45.2 bits (104), Expect = 0.033, Method: Composition-based stats.
Identities = 25/279 (8%), Positives = 66/279 (23%), Gaps = 16/279 (5%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
++ + + ++ S S + V + + + G ++
Sbjct: 7 IFIIFTLYYCVFPFSLYAVENFPSGVMAIVNGEPITLQQVE--------ALHDVSGNILP 58
Query: 77 SERARSVGLDKK----ILDNLVSGATLDQFIEDIGLEADHGRV---WGEIARSPLFHGKD 129
V ++ L L+ + Q + +GL+ V EI + + +
Sbjct: 59 LREKPEVHFLQEQYGDSLYTLIIYTLMSQELGKLGLKVTEQDVLLAENEIKQDYVGEDFE 118
Query: 130 NKFSHDVFV-SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
+ + + +L + + E
Sbjct: 119 KSLQEEYLDIETWRQLMKQRLTFQRFQHHILRPKFTLSSDEIEEYYFKHYSEFFIPEKVE 178
Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
+ + + D + Q R P R + E + +
Sbjct: 179 IIWYQEVENSQQRKAKHKDCDRNDIEQGDIIRVALDRLPAKMRQDLMKIKPGEYTPRHKE 238
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
A K + + I ++ ++ E
Sbjct: 239 GEIYQYAFLRKRYPAHQADIIEAYSRIELILLEQKMEQA 277
>gi|324325280|gb|ADY20540.1| peptidylprolyl isomerase [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 285
Score = 45.2 bits (104), Expect = 0.033, Method: Composition-based stats.
Identities = 31/264 (11%), Positives = 80/264 (30%), Gaps = 14/264 (5%)
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
K D T ++ + K+L++ + +++ + D +
Sbjct: 21 CGQKNDSDTVATATDSTITKSDFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDDDVDKEL 80
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
K K +K L + L + I E ++V
Sbjct: 81 QKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAMNEAIKKSITE---------KDVKD 131
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF- 543
K + K ++A ++ + G +F ++ K LL+ + + N
Sbjct: 132 HYKPEIKASHILVSDENEAKEIKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGR 190
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLTQMMNKD- 601
+ + + V + +++ ++ P E KD L + D
Sbjct: 191 MAPEFETAAYKLKVGQISNPVTSPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERISDP 250
Query: 602 -LLDSVIAYLKSQYSVTVHDNLIQ 624
++ + ++ ++D+ ++
Sbjct: 251 IFGKKLLQDELKKANIKINDSELK 274
>gi|261837623|gb|ACX97389.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori 51]
Length = 299
Score = 45.2 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 54/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + R +V + + A+ + + F + + + K
Sbjct: 83 DQAIRTALVENEAKTERLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKIQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQ-----LFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
D+ + M+ + L I L+ + ++
Sbjct: 258 VTYTYDQAKPTIKGMLQEKLFQERMNQRIEELRKHAKIVINK 299
>gi|15644804|ref|NP_206974.1| cell binding factor 2 [Helicobacter pylori 26695]
gi|2499779|sp|P56112|Y175_HELPY RecName: Full=Uncharacterized protein HP_0175; Flags: Precursor
gi|2313264|gb|AAD07245.1| cell binding factor 2 [Helicobacter pylori 26695]
Length = 299
Score = 45.2 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 18/222 (8%), Positives = 54/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + R +V + + A+ + + F + + + K
Sbjct: 83 DQAIRTALVENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKVQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQ-----LFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
++ + M+ + L I L+ + ++
Sbjct: 258 VTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKIVINK 299
>gi|260663478|ref|ZP_05864368.1| peptidylprolyl isomerase [Lactobacillus fermentum 28-3-CHN]
gi|260552019|gb|EEX25072.1| peptidylprolyl isomerase [Lactobacillus fermentum 28-3-CHN]
Length = 325
Score = 45.2 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 26/255 (10%), Positives = 71/255 (27%), Gaps = 11/255 (4%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
E V + +V + A V
Sbjct: 31 TESEYYSSMKQTSNGKQVLQQMILDKVLEKQYGSKVSTSEVNSEYNAYKKEYGSSFSTVL 90
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
++ +K + + ++ L++ + +T + A
Sbjct: 91 SEEGLTAKSFKQQIRSNLLLKAAVRNYSTFSSSALKKQWKKYEPKVQTAEILVGSKETAQ 150
Query: 505 QLVLEYSK----EGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPV 557
++ + + K F+ + K+ T + ++ DN + F+
Sbjct: 151 SIIDTLNNTSGSKLKEFKKLAKSKSTDTTTKSNGGVLSAFDNTDTSLPSAYRKAAFALKT 210
Query: 558 EMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYL-TQMMNKDLL-DSVIAYLKSQ 613
P++ Y V + +K + TQ +N +V++ + +
Sbjct: 211 GEYTTEPVKTDNGYYVIYMIKHPAKGKYSSHISDLKDQIVTQNLNNSTFLHNVVSKVLKK 270
Query: 614 YSVTVHDNLIQRYLD 628
+++ D+ ++ +D
Sbjct: 271 GDISIKDSDLKNIMD 285
>gi|332673018|gb|AEE69835.1| cell binding factor 2 [Helicobacter pylori 83]
Length = 299
Score = 45.2 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 54/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + R +V + + A+ + + F + + + K
Sbjct: 83 DQAIRTALVENEAKTERLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKVQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQ-----LFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
D+ + M+ + L I L+ + ++
Sbjct: 258 VTYTYDQAKPTIKGMLQEKLFQERMNQRIEELRKHAKIVINK 299
>gi|325106143|ref|YP_004275797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans
DSM 12145]
gi|324974991|gb|ADY53975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pedobacter saltans
DSM 12145]
Length = 454
Score = 45.2 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 53/495 (10%), Positives = 121/495 (24%), Gaps = 83/495 (16%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
+ + +L +S LF+ V VG + S + Q + G
Sbjct: 5 LVIALLI-------MSSNLFAQKKVIDKVVAVVGDNIILQSEVEQQYAQYILQ-----GT 52
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ + I+ +++S L + + + G V E+ +
Sbjct: 53 KPDP------NIKCYIMQSMLSQKLLTKQAAIDSIVVEDGDVDNEVE-----RRMRTMIT 101
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
RL + R +V + + + F
Sbjct: 102 RAGGEQRLEEFLGRPVILYKDEIRPDIREQLVAQKMQAKITEKVEVTPLDVRRFY---QA 158
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + V+
Sbjct: 159 IPKDSLPVYNTEVEVGEIVIYP-------------------------------------- 180
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
++ KE Y ++ + S G + L
Sbjct: 181 -KLTKEEKETYKDKLEALRLRIKNGDSFATLARLYSQDPG-----------SARDGGELP 228
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
F + + + K G+ +PV FG+ V + + + +
Sbjct: 229 FFDRNTMAKE--FTAWAFKLKPGELSPVFETEFGFHFLEVLERRGENVRARHILIVPDSP 286
Query: 374 QMRITKASEKVKEDYKRLEEFLALG---TSMDEISRREKIVSIDLPLVDFAGKDVKGKEV 430
+ +A ++ Y+++ S+ + K + + + +
Sbjct: 287 PAALERARVEIDSIYQKVVAKKMDFSAAASLYSGNNDTKYNGGMILNYESSNRTTYIPTD 346
Query: 431 AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
P ++ + T Y ++ +K IP LE+ +K+
Sbjct: 347 KLDPSIFLVVDTMKVGSYSKPDVFTDNRGKKGYRFLYLKTKIPPHTANLEQDFPKIKEAA 406
Query: 491 KTVKTAEEVSSKANQ 505
KT++ VS +
Sbjct: 407 YEEKTSKVVSDWFEK 421
>gi|296445269|ref|ZP_06887228.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
trichosporium OB3b]
gi|296257224|gb|EFH04292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylosinus
trichosporium OB3b]
Length = 335
Score = 45.2 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 43/138 (31%), Gaps = 5/138 (3%)
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
KA + + + ++ K+ D A + + ++V
Sbjct: 195 ADRATEDKAKKTLEDIQRKLKSGADFAAVAKAQSEAKDGGELGWLAEGQIRPEIRTRVMG 254
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKV----GPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
V PI+ + K+ ++K + +++ + L + +A L
Sbjct: 255 LVKGAV-SEPIQLDDGWHFVKLIDTKASTTRPLAEAREQLAQQMRVERAGLLRRAYVAEL 313
Query: 611 KSQYSVTVHDNLIQRYLD 628
+ V++ + LD
Sbjct: 314 VKRNPPVVNEIALSNILD 331
Score = 37.1 bits (83), Expect = 10.0, Method: Composition-based stats.
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 8/66 (12%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ V VG + S + +G + A+ GL + + +++
Sbjct: 64 TSDDVVAHVGATDITTSQLRAYVEA--------LGAREQAAIAKEPGLLSQAVRAMLNER 115
Query: 98 TLDQFI 103
+ Q
Sbjct: 116 VVLQEA 121
>gi|261493819|ref|ZP_05990333.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261495044|ref|ZP_05991511.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261309286|gb|EEY10522.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310522|gb|EEY11711.1| peptidylprolyl isomerase [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 314
Score = 45.2 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 38/123 (30%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ +K + L + + +F + K + + + V S
Sbjct: 188 QAKAKLSSLTADINSGKISFEEAAKAHSVDYASGTDGGDLGFNFLEIYDPAFANVASKIK 247
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQY 614
P ++ + + KVT+++ G E + L ++ + L+
Sbjct: 248 PNQISAPFKSQFGWHILKVTDTRNGDRTEDAYHQRAYQQLVNKQAEEASKDWVKALRKTA 307
Query: 615 SVT 617
++
Sbjct: 308 NIQ 310
Score = 44.1 bits (101), Expect = 0.079, Method: Composition-based stats.
Identities = 14/159 (8%), Positives = 45/159 (28%), Gaps = 24/159 (15%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ K V + V V + S ++ + +
Sbjct: 2 KLVKSLFAVAVATMSLT----QTAHAFEERVVALVNDTPIMQSQVQRVLGKKKATETAQ- 56
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +D ++ + Q +++ G++ V + N
Sbjct: 57 ---------------RAAIDQVIDDMLVQQAMKEAGVKVSPAAVNQAVENV----AIQNG 97
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ + L +GI +++ + + ++ V + +
Sbjct: 98 ITYGQLLDALDYQGITLEQFKRNIAQQMAMEQVRHISIS 136
>gi|149178604|ref|ZP_01857190.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces maris
DSM 8797]
gi|148842530|gb|EDL56907.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces maris
DSM 8797]
Length = 317
Score = 45.2 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 22/284 (7%), Positives = 76/284 (26%), Gaps = 8/284 (2%)
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
I + ++ + + F + + +A + A +RL + + +
Sbjct: 35 IKDTTKVLVTVNGHPVTQADLDFATLTRRMAGDQKPNPAQLLESLINQRLIQDFLVDKKI 94
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
+ + + ++ + + + L S + +
Sbjct: 95 KVPVELLDQSVSRIRSIIRKTDGDPDQTLSQMGFPPEKLRAAIELPLAWSIYASTQITPE 154
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVK--KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ E D E + +D ++ ++ ++ + + F +
Sbjct: 155 K-IQNYFAEHREELDGTRIEARHILLKPEDPSNQESIDKAKAQLADIRKQILDGKLTFAE 213
Query: 520 IGKNLGASLLTTNQINRM-DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+ + + ++F + P + + ++
Sbjct: 214 AAVQHSTAPSKQDGGKLVPSAYRGKMPLVLTQKIFPLEEGAI-SEPFQTPFGIHIAQLNK 272
Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV--TVHD 620
G +D + + +++ L D I L+S + +
Sbjct: 273 KHPGQFSLED-VRGEIYRSLSRSLWDKTIQSLRSSAKIDWKIDR 315
Score = 44.1 bits (101), Expect = 0.072, Method: Composition-based stats.
Identities = 24/215 (11%), Positives = 58/215 (26%), Gaps = 24/215 (11%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFL---IWGLSDALFSVSGSSTVVSVGRQKVPFSSFI 57
M +R + L +L + A + +V+V V +
Sbjct: 1 MFISLR----SIFIVSSLALLMFAPASDSLSAADKAPAIKDTTKVLVTVNGHPVTQADLD 56
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ QK ++L++L++ + F+ D ++ +
Sbjct: 57 FATLTRRMAGDQKPNPA-------------QLLESLINQRLIQDFLVDKKIKVPVELLDQ 103
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
++R K D L++ G ++ L+ + + + N
Sbjct: 104 SVSRI---RSIIRKTDGDP-DQTLSQMGFPPEKLRAAIELPLAWSIYASTQITPEKIQNY 159
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ + +I+L A
Sbjct: 160 FAEHREELDGTRIEARHILLKPEDPSNQESIDKAK 194
>gi|283956683|ref|ZP_06374162.1| hypothetical protein C1336_000260133 [Campylobacter jejuni subsp.
jejuni 1336]
gi|283791932|gb|EFC30722.1| hypothetical protein C1336_000260133 [Campylobacter jejuni subsp.
jejuni 1336]
Length = 271
Score = 45.2 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 18/188 (9%), Positives = 56/188 (29%), Gaps = 25/188 (13%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + F + + + + ++ V V ++ + + K
Sbjct: 4 ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTMKVLKID-------------- 47
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L L++ ++ +G+ + + I + NK + + F +
Sbjct: 48 -----RNQALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLA----QNKTTLNAFKAN 98
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L + + +++ + K L + + + K F + N
Sbjct: 99 LKSKNQSYEQFRANLKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINA 158
Query: 201 HVPAIADP 208
++ +P
Sbjct: 159 NIYLSNNP 166
>gi|227515601|ref|ZP_03945650.1| peptidylprolyl isomerase [Lactobacillus fermentum ATCC 14931]
gi|227086031|gb|EEI21343.1| peptidylprolyl isomerase [Lactobacillus fermentum ATCC 14931]
Length = 313
Score = 45.2 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 28/257 (10%), Positives = 72/257 (28%), Gaps = 15/257 (5%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
E V + +V + A V
Sbjct: 31 TESEYYSSMKQTSNGKQVLQQMILDKVLEKQYGSKVSTSEVNSEYNAYKKEYGSSFSTVL 90
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
++ +K + + ++ L++ + +T + A
Sbjct: 91 SEEGLTAKSFKQQIRSNLLLKAAVRNYSTFSSSALKKQWKKYEPKVQTAEILVGSKETAQ 150
Query: 505 QLVLEYSK----EGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPV 557
++ + + K F+ + K+ T + ++ DN + F+
Sbjct: 151 SIIDTLNNTSGSKLKEFKKLAKSKSTDTTTKSNGGVLSAFDNTDTSLPSAYRKAAFALKT 210
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGP------VQEKDKFISYLTQMMNKDLLDSVIAYLK 611
P++ Y V + KD+ ++ M N L +V++ +
Sbjct: 211 GEYTTEPVKTDNGYYVIYMIKHPAKGKYSSHISDLKDQIVTQ--NMNNSTFLHNVVSKVL 268
Query: 612 SQYSVTVHDNLIQRYLD 628
+ V++ D+ ++ +D
Sbjct: 269 KKGDVSIKDSDLKNIMD 285
>gi|320103011|ref|YP_004178602.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida
ATCC 43644]
gi|319750293|gb|ADV62053.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Isosphaera pallida
ATCC 43644]
Length = 370
Score = 45.2 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + ++ + I G + ++ LV+ L
Sbjct: 61 DQPLAVVNATPITRRD----VQRIMAQIELAPGAEIQDAY-------NMAVEMLVNTELL 109
Query: 100 DQFIEDIGLEADHGRVWGEIARS 122
QF+ G+ + E+AR
Sbjct: 110 FQFLNRQGITVTKKDLDDELARL 132
>gi|167950975|ref|ZP_02538049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 93
Score = 45.2 bits (104), Expect = 0.035, Method: Composition-based stats.
Identities = 12/75 (16%), Positives = 28/75 (37%)
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
V + P++ + V + +S+ P D S LT + + +L
Sbjct: 4 PFADAVQAMEKGKYSEAPVKTQFGWHVILLEDSRDLPAPSLDAVRSELTTRLQQQVLADY 63
Query: 607 IAYLKSQYSVTVHDN 621
I L+++ + ++
Sbjct: 64 IQELRAKTKLHYNEQ 78
>gi|159901476|ref|YP_001547723.1| hypothetical protein Haur_4965 [Herpetosiphon aurantiacus ATCC
23779]
gi|159894515|gb|ABX07595.1| hypothetical protein Haur_4965 [Herpetosiphon aurantiacus ATCC
23779]
Length = 463
Score = 45.2 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 35/105 (33%), Gaps = 24/105 (22%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMIS-------------------QKIGFVVNSERA 80
+ T+ ++ +V + + ++Q + ++ V + A
Sbjct: 60 NKTIANIAGVEVTNAEYQQ-YRQIMQAQQAINLAQQIQQYAQYQLQGTEQFATDVTNYIA 118
Query: 81 ----RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
++ LD +L+ L+S L+ G+ + +A
Sbjct: 119 GLKDQNAPLDYAVLNQLISDKILENNAAAEGITVSDEELQQSLAT 163
>gi|118474611|ref|YP_891704.1| foldase protein PrsA [Campylobacter fetus subsp. fetus 82-40]
gi|118413837|gb|ABK82257.1| foldase protein PrsA [Campylobacter fetus subsp. fetus 82-40]
Length = 269
Score = 45.2 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 24/217 (11%), Positives = 55/217 (25%), Gaps = 10/217 (4%)
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ L+D + + A E+ + + +++ E
Sbjct: 51 ADMKKNLLDRVIERKLMLDQAKKDGIEKDDEFKKVVKELEDNVAINIWMKKQFDAIKVDE 110
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK-EGKNFRDIGKNLGASLL 529
+ + V K E +A ++ + +G +
Sbjct: 111 KKAKDFYEQNKDKFVVPAQAKAKHILVETEKEAADIIKSLNGLKGAALDKKFSEIAKEKS 170
Query: 530 TTNQINRMDNENKFFGYDGI-----SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
E +FG + F + P+++ Y V + K
Sbjct: 171 IDKSSAVNGGELGWFGESQMVASFSKAAFGLKKGEITNKPVKSEFGYHVILKEDMKDKSA 230
Query: 585 QEKDKFISYLTQMMNKDLLDSVIA----YLKSQYSVT 617
DK + + M + +V+ LK +
Sbjct: 231 VGFDKAKANIENQMKSEEFRTVMQKKVSDLKKDAKIE 267
Score = 37.9 bits (85), Expect = 5.0, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
++ + +V Q + ++ +G + + K +LD ++
Sbjct: 18 NAAVLATVNGQNITDED-----------LAPVLGPHGSETSNVPADMKKNLLDRVIERKL 66
Query: 99 LDQFIEDIGLEADHG 113
+ + G+E D
Sbjct: 67 MLDQAKKDGIEKDDE 81
>gi|110636616|ref|YP_676823.1| peptidyl-prolyl cis-trans isomerase [Cytophaga hutchinsonii ATCC
33406]
gi|110279297|gb|ABG57483.1| peptidyl-prolyl cis-trans isomerase (survival protein) [Cytophaga
hutchinsonii ATCC 33406]
Length = 452
Score = 45.2 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 19/167 (11%), Positives = 51/167 (30%), Gaps = 12/167 (7%)
Query: 21 LFVPFLIWGLSDALFSVSGS---STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
LFV F+ +++ F + V V Q V S S+ Q + ++ +
Sbjct: 10 LFVFFVF--VTNYHFCAAQQVIDKIVAKVDNQIVLKSEVEISYLQFMRSPEAQMMQTTDD 67
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+ ++L++L+ L + + + +I R + + +
Sbjct: 68 -------IKCRVLESLIINKMLLARAVMDSVTVEREIINQQIDRRMDYFIQQFGTVAKLE 120
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
++E + + G+ + + + +
Sbjct: 121 SYYNKSIDQLKEELYPQIRDQMVTQKMQDNITAGVTITPNDVKKFYK 167
>gi|108562596|ref|YP_626912.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori HPAG1]
gi|107836369|gb|ABF84238.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori HPAG1]
Length = 299
Score = 45.2 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 54/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
E + R +V + + A+ + + F + + + K
Sbjct: 83 EQAIRTALVENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKVQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQ-----LFVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
++ + M+ + L I L+ + ++
Sbjct: 258 VTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKIVINK 299
>gi|289579341|ref|YP_003477968.1| hypothetical protein Thit_2193 [Thermoanaerobacter italicus Ab9]
gi|289529054|gb|ADD03406.1| hypothetical protein Thit_2193 [Thermoanaerobacter italicus Ab9]
Length = 240
Score = 45.2 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 41/144 (28%), Gaps = 20/144 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSS----------TVVSVGRQKVPFSS- 55
K + + + L+ + +I + + G + + VG K+
Sbjct: 3 KNRKILLMIVLLITILAASIITAAGSNPWFLLGKNSLKYEKDRDVIIAKVGNTKITKEDI 62
Query: 56 --------FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIG 107
F Q +NS + V K IL+ L+ A L + + G
Sbjct: 63 EMQILFNKFQKEVLNRKLSELQNSNLNINSFLSVDVS-RKDILNKLIDEAILYEEAQRQG 121
Query: 108 LEADHGRVWGEIARSPLFHGKDNK 131
L + + + K
Sbjct: 122 LNVTYDDAKKFMENTRYIMNAIAK 145
>gi|221236099|ref|YP_002518536.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
gi|220965272|gb|ACL96628.1| peptidyl-prolyl cis-trans isomerase [Caulobacter crescentus NA1000]
Length = 323
Score = 45.2 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 13/150 (8%), Positives = 44/150 (29%), Gaps = 1/150 (0%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ E + ++ L+ ++ + + ++A + + + G +F +
Sbjct: 131 VTEDAIRKLYAEQQKLSKRSEEIRARQILVGSQAEA-ESIKKLLATGASFDALAMERSTD 189
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
T + + + P +V+ KV + +
Sbjct: 190 QATRFNGGDLGYFTLDVMPEAYGAALKDAQKGALIGPFAAEGGWVLVKVEDKRTEEPITL 249
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + + + D + ++ L+ V
Sbjct: 250 EAARPQIIRFLTYDQVRDILEKLRGSAKVE 279
Score = 41.8 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 28/104 (26%), Gaps = 11/104 (10%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSV----SGSSTVVSVGRQKVPFSSFINSWKQEL 64
++ L + +I + G + V V Q + S +
Sbjct: 4 KTSFRLMGVLGAVACALMIASCGQNKVAEKPPEPGDTAVARVNGQVIWASDVKRE---AV 60
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
G ++ S + ++ LD ++ L L
Sbjct: 61 AQGLISEGEPLD----ISSEVFRQRLDEVIDQKLLAAEAVKRKL 100
>gi|294788198|ref|ZP_06753441.1| putative signal peptide protein [Simonsiella muelleri ATCC 29453]
gi|294483629|gb|EFG31313.1| putative signal peptide protein [Simonsiella muelleri ATCC 29453]
Length = 292
Score = 45.2 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 12/103 (11%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
+++ LS +LF+ TVV+V K+ S + +I L
Sbjct: 12 VLFALSGSLFAA----TVVTVNGVKIDSSDVERRAENVQKNTQGQISDG--------PQL 59
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
+ I + L++ + Q + + L+ E +
Sbjct: 60 RQFITNELITEQLVVQEAKRLKLDKSSDYQAAEAEALKQAKAQ 102
>gi|154149306|ref|YP_001405723.1| putative periplasmic protein [Campylobacter hominis ATCC BAA-381]
gi|153805315|gb|ABS52322.1| putative periplasmic protein [Campylobacter hominis ATCC BAA-381]
Length = 275
Score = 45.2 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 40/151 (26%), Gaps = 29/151 (19%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K + L F + + + V V + + K
Sbjct: 4 KFVFLSLIFGFCLA------NADVINGVVAVVENEPITHYELNKMIKT----------RG 47
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+N A L+ L+ I+ +G+ I NK S
Sbjct: 48 LNPNDA---------LEVLIKNKLQVAEIKRLGIITSDYETNERIKAIAA----QNKISV 94
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
D + + ++G E+ ++ L +
Sbjct: 95 DTMQASIKKQGGTWSEFKENVRNSLQEEKLY 125
>gi|149176439|ref|ZP_01855053.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris
DSM 8797]
gi|148844791|gb|EDL59140.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris
DSM 8797]
Length = 369
Score = 45.2 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 16/181 (8%), Positives = 47/181 (25%), Gaps = 21/181 (11%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V VG + G ++L+N+++ A +
Sbjct: 69 TQPVAKVGSVVISEDELARECIALYG---------------------PEVLENVINRAII 107
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+Q + G+ + V E+ + D K +++ + + + L
Sbjct: 108 EQACQKAGVNVEQAEVHAEVEKIAKRFNLDTKTWYEMLQAERKMNPNQYRRNVIWPMLAL 167
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + + + + + + V + ++
Sbjct: 168 RKLAGQRTKLSQDQVQKAFVRDYGPRVKARMIMMDNLSRAQKVWDEVKKNPGDFERFARD 227
Query: 220 Y 220
Y
Sbjct: 228 Y 228
Score = 38.3 bits (86), Expect = 4.3, Method: Composition-based stats.
Identities = 19/164 (11%), Positives = 49/164 (29%), Gaps = 8/164 (4%)
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS---KANQLVLEYSKEGKNFR 518
+ ++ + + + V+ VK + +A ++ E K +F
Sbjct: 163 PMLALRKLAGQRTKLSQDQVQKAFVRDYGPRVKARMIMMDNLSRAQKVWDEVKKNPGDFE 222
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGI-SQVFSGPVEMVKCFPIENGLSYVVF--- 574
++ + + +F + + F V Y +
Sbjct: 223 RFARDYSIEPNSRALGGAIQPIPQFSENESLWKAAFKLKEGEVSGIVQIGLSRYAILLCE 282
Query: 575 -KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + +++ + LT+ ++ + V A LK Q V
Sbjct: 283 GRTEPIVNSIKEVENQLVDQLTEEQTQEAVARVFAKLKEQTRVD 326
>gi|73748896|ref|YP_308135.1| putative protein export protein [Dehalococcoides sp. CBDB1]
gi|73660612|emb|CAI83219.1| putative protein export protein [Dehalococcoides sp. CBDB1]
Length = 422
Score = 45.2 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 41/410 (10%), Positives = 114/410 (27%), Gaps = 28/410 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSF 56
E RK R A L V+ + + G+ +TV++VG K + F
Sbjct: 21 FEAQRKRQRIIFATG-LSVIGIVLALVGIGVYKGWYVDQYKPMHTTVLTVGDTKYNVAYF 79
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ + G SQ + + + + + + ++G +
Sbjct: 80 VDALRHFTGGDSQ-----------YAYYFIDAVSERIQLNQLMVEKASEMGYTISDDEID 128
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I +++ + + +K +++ + +T + + S
Sbjct: 129 AAIE-------ENSLTDVPAVRDIVRASLLTDKLKTEYFDPQVPQTAEQREALAMLLESE 181
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ S ++ + Y + ++ +
Sbjct: 182 NAASDVLAGITTDEEFAAKAAELSLESNTKTDSGSIGFKPAGTITSLYGSEILEKYIFST 241
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ + + + E+ E ++ P+++ A E L G+ +
Sbjct: 242 EGYDYALVQDADVSKQRAYWLMEVLERKTDSEQIHTLGMLLPSEQVALEVKARLAAGESW 301
Query: 297 IQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
LA E + + + + +P+ + + I Y
Sbjct: 302 GDLAVEFSQLANVEENQGDMDWITFSSVPENVADIIFATDVELNTVLDPIQDDTNYTRGG 361
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
++ +++ +D + K + + + L S +
Sbjct: 362 CWIVRLKSIDENRQLSEDDRKLLISDKLDQWTADLKAANLDKLTNTFSDE 411
>gi|297568758|ref|YP_003690102.1| hypothetical protein DaAHT2_0779 [Desulfurivibrio alkaliphilus
AHT2]
gi|296924673|gb|ADH85483.1| hypothetical protein DaAHT2_0779 [Desulfurivibrio alkaliphilus
AHT2]
Length = 296
Score = 45.2 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 26/252 (10%), Positives = 67/252 (26%), Gaps = 13/252 (5%)
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
V+ + + E + + R + ++ + + +
Sbjct: 45 TMADVRNEMELRPEATREFFRAHDGAARFVDSLVTKEVLYQEARRRGLDQEPQLRRVIDD 104
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
R + + ++ + G + + P E+V + +
Sbjct: 105 YARTLLVNTLIEQELAPKVQFGEEDLQEYYRNNPEEFMTREKVRLSRIVVGSAEEAQQ-- 162
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-GPVE 558
V ++F + ++L T + E F+ +
Sbjct: 163 -------VRARLLADEDFAAVAQDLSLEQETAAGGDLGFVERDALSEREAHLAFNVLGLG 215
Query: 559 MVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ +VV K+T+ V + K+ + K + +A LK
Sbjct: 216 DISSPQELAENRFVVIKLTDLQGETVPYEEIKNLLAQRMETFGRKAAFEDFVATLKQDRK 275
Query: 616 VTVHDNLIQRYL 627
+ IQ+ +
Sbjct: 276 IEFSAEAIQQLM 287
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 28/117 (23%), Gaps = 18/117 (15%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
TV +V ++ + N + + E R+ + +D+LV+ L Q
Sbjct: 35 TVATVDGARITMADVRNEME---------LRPEATREFFRAHDGAARFVDSLVTKEVLYQ 85
Query: 102 FIEDIGL-------EADHGRVWGEIAR--SPLFHGKDNKFSHDVFVSRLAREGINEK 149
GL + +F +
Sbjct: 86 EARRRGLDQEPQLRRVIDDYARTLLVNTLIEQELAPKVQFGEEDLQEYYRNNPEEFM 142
>gi|228942849|ref|ZP_04105367.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228816835|gb|EEM62942.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
Length = 284
Score = 45.2 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 7/146 (4%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+E+ K K + A ++ + G++F + K + + +
Sbjct: 127 TEKEMKDYYKPKLKASHILVKDEKTAKEIKEKL-NNGEDFAALAKQYSEDPGSKEKGGEL 185
Query: 538 DNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ V PI++ Y + K+T K QEKD L
Sbjct: 186 PEFGPGEMDSKFEEAAYKLEAGQV-SDPIKSSHGYHIIKLTEKKELKPFDQEKDNIRKEL 244
Query: 595 TQMMNKDLLDS--VIAYLKSQYSVTV 618
Q ++D L + + +
Sbjct: 245 EQKRSQDQQWQQQFFKDLFKKADIKI 270
>gi|317176991|dbj|BAJ54780.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
F16]
Length = 299
Score = 45.2 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 19/222 (8%), Positives = 54/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + R +V + + A+ + + F + + + K
Sbjct: 83 DQAIRTALVENEAKTERLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKIQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQF-----FVKQEAHARHILVKTEDEAKRIISEIDKQPKAKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGDYTKTPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
D+ + M+ + L I L+ + ++
Sbjct: 258 VTYTYDQAKPTIKGMLQEKLFQERMNQKIEELRKHAKIVINK 299
>gi|307297459|ref|ZP_07577265.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales
bacterium mesG1.Ag.4.2]
gi|306916719|gb|EFN47101.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thermotogales
bacterium mesG1.Ag.4.2]
Length = 546
Score = 45.2 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 25/326 (7%), Positives = 77/326 (23%), Gaps = 21/326 (6%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK---- 70
K L++L F + + + ++ + + +
Sbjct: 3 KFLLILLAAFFSLTLIGAEYAVRITKGGEAVSNEFWITREEIEQAFSATVANAASQGIIL 62
Query: 71 ---IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
GL I+ +V +D F + L + E +
Sbjct: 63 DPYFDSYFTPSEL---GLKTMIIPYIVDEKLIDYFAWESNLIPSEEEIDAETDSMMEMYT 119
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN------LLLDQ 181
S V ++ + + +S + + P N +
Sbjct: 120 -----SSPDMVEQIEAIYGSMDAFRSEIRNYVSDALKAELVQESVAPLNDDALAAYFEEF 174
Query: 182 AKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHE 241
+ ++ + + + + + + + + ++
Sbjct: 175 KTEIKNQFETIRARHILVTEEATATELMDRINSGEITFAEAALQFSIDSSTAANGGELGS 234
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
+ + E E Y + L+ ++ + + + +
Sbjct: 235 IVRGQTVPEFEEAILAAPIGELYGPVQSEFGYHLIIVEERNEINSLEDVVNSASYNDFVS 294
Query: 302 EQGKSLSDISLGSFSKEYIPDVSLAD 327
+ + S+ +E D + D
Sbjct: 295 GYQNDTYNRWIESYIEENEFDYEILD 320
>gi|16127297|ref|NP_421861.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter
crescentus CB15]
gi|13424717|gb|AAK25029.1| peptidyl-prolyl cis-trans isomerase family protein [Caulobacter
crescentus CB15]
Length = 314
Score = 45.2 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 13/150 (8%), Positives = 44/150 (29%), Gaps = 1/150 (0%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ E + ++ L+ ++ + + ++A + + + G +F +
Sbjct: 122 VTEDAIRKLYAEQQKLSKRSEEIRARQILVGSQAEA-ESIKKLLATGASFDALAMERSTD 180
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
T + + + P +V+ KV + +
Sbjct: 181 QATRFNGGDLGYFTLDVMPEAYGAALKDAQKGALIGPFAAEGGWVLVKVEDKRTEEPITL 240
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + + + D + ++ L+ V
Sbjct: 241 EAARPQIIRFLTYDQVRDILEKLRGSAKVE 270
Score = 40.2 bits (91), Expect = 0.96, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 11/96 (11%)
Query: 17 FLVVLFVPFLIWGLSDALFSV----SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
L + +I + G + V V Q + S + G
Sbjct: 3 VLGAVACALMIASCGQNKVAEKPPEPGDTAVARVNGQVIWASDVKRE---AVAQGLISEG 59
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
++ S + ++ LD ++ L L
Sbjct: 60 EPLD----ISSEVFRQRLDEVIDQKLLAAEAVKRKL 91
>gi|282880884|ref|ZP_06289577.1| PPIC-type PPIASE domain protein [Prevotella timonensis CRIS 5C-B1]
gi|281305266|gb|EFA97333.1| PPIC-type PPIASE domain protein [Prevotella timonensis CRIS 5C-B1]
Length = 475
Score = 44.8 bits (103), Expect = 0.038, Method: Composition-based stats.
Identities = 44/482 (9%), Positives = 131/482 (27%), Gaps = 33/482 (6%)
Query: 144 EGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
++ + K + R++ + + + + V+
Sbjct: 18 AQQDDPILMTINGKNIHRSEFEYSYNKNNAEGVIDKKSVDEYVDLFINYQLKVIAAEEAR 77
Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
S + + + +++++ ++ L
Sbjct: 78 LDTLSSFKKEFAMYRDAQIKPTMITDADVEQKAHEIYQQTANRVNASGGLVKVSHILIAL 137
Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
+ + G+ ++++++ + L + +
Sbjct: 138 KQTAGEVDRRIAEQRADSVYRALCKGANFGELAKRVSDDRASASRGGELPWLERGQTLEE 197
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
D KKG+ + + GY I + + + F + + + R +
Sbjct: 198 --FDKAIFSMKKGELSKPVQTPAGYHIIFLKDKRSFFPYDSLKTEILQFIEQRGIRDQLI 255
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
K+ +E + T D ++++ K + P + + K+ + ++ +
Sbjct: 256 SKKIQTAIEHAGSGVTEDDILAQKRKELVAKNPQLKYLIKEYHDGLLLFEVMTREIFSKA 315
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
L++ Y K+ E+ + K + KA
Sbjct: 316 QNNAQALNE----------YFRQNRKKYK------WEQPRFKGIAYYTKNKKDIKAVRKA 359
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQI--NRMDNENKFFGYDGISQVFSGPVEMVK 561
+ V F + K + + + I + N K + + + VK
Sbjct: 360 VRRV--------PFEEWTKVIQQTFNQDSTIRVSVDKNIFKKGDHPLVDCHVFKKIGQVK 411
Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ K+ Q + + ++L + L+ +Y ++V +
Sbjct: 412 PL-----TDFPYAATYGKKLKKPQCYQDVEAQVVADYQEELEKQWVQRLRRKYPISVRRD 466
Query: 622 LI 623
++
Sbjct: 467 IL 468
>gi|118595195|ref|ZP_01552542.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
bacterium HTCC2181]
gi|118440973|gb|EAV47600.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylophilales
bacterium HTCC2181]
Length = 428
Score = 44.8 bits (103), Expect = 0.038, Method: Composition-based stats.
Identities = 21/190 (11%), Positives = 55/190 (28%), Gaps = 13/190 (6%)
Query: 11 TWVAKIFLVVLFVPFLI--WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
+ + + +VL WG D V V + + + + +
Sbjct: 3 SVINSLIFIVLIASHACLSWGYDDY---EPLDKIVAVVEKDVITKKEMEHGIESFNKGLR 59
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
+ SE + + +LD L+ + Q+ E + D ++ +
Sbjct: 60 GSNPNNLPSE----KEIREIVLDELIEKKIISQYAEQSQIIIDIQQIDNALKNIAA---- 111
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
+N + + + G + Y + ++ R + S+ + +
Sbjct: 112 NNNITLEQLKESAKKSGGLDDLYEEVRFQLTLRIIKERAIFSQINISDYEIKKFIEKERL 171
Query: 189 NRSVDYIVLN 198
Y + +
Sbjct: 172 RNPDQYSISH 181
>gi|328947374|ref|YP_004364711.1| basic membrane protein [Treponema succinifaciens DSM 2489]
gi|328447698|gb|AEB13414.1| basic membrane protein [Treponema succinifaciens DSM 2489]
Length = 359
Score = 44.8 bits (103), Expect = 0.038, Method: Composition-based stats.
Identities = 33/363 (9%), Positives = 86/363 (23%), Gaps = 31/363 (8%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGR-QKVPFSSFINSWKQELGMISQKIGF 73
K + +L L S VV + + + + K I ++ G
Sbjct: 3 KFSIGLLIF---FAALGAFAQSDLQPLAVVKLNKSETITVKQL----KTRANFIQKQYGM 55
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ +L+NL++ + Q GL +V +
Sbjct: 56 ESLPIEQ-----KQALLENLIAEKLITQAAAKEGLSVTDSQVDDAFLNTFSQQLGTRVSE 110
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + G + +YI + +
Sbjct: 111 AQLEDLIKKQTGKSLDDYIK------------------EYSGMSKSEYKAYLKNQLIIQQ 152
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
YI + ++ + +E K + + ++ ++ + +L
Sbjct: 153 YIFSKKQSEIQAVAATDEEIRNAYEMNKSTFVWNDMMKLFLVMVPKGSNDMAARALATDL 212
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
+ +Y+ + +K + + + + + S L
Sbjct: 213 RNKYKGDSKKLEEIKNSNENGTNYRAGDITVAKTAQQAQQLGWSIDRLNELFGKSAGYLS 272
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
++ A AK + V+ + + Q +
Sbjct: 273 EVTETASDFQFYAVLKRYDAKMLSISDVVQPETTVTVYDYLKRNITSQKQSQYFTEAAQE 332
Query: 374 QMR 376
+
Sbjct: 333 ISK 335
>gi|308171963|ref|YP_003918668.1| protein secretion PrsA-like protein [Bacillus amyloliquefaciens DSM
7]
gi|307604827|emb|CBI41198.1| putative protein secretion PrsA homolog [Bacillus amyloliquefaciens
DSM 7]
Length = 296
Score = 44.8 bits (103), Expect = 0.038, Method: Composition-based stats.
Identities = 16/178 (8%), Positives = 52/178 (29%), Gaps = 25/178 (14%)
Query: 10 RTWVAKIFLVVLFVPFLIW-GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
RT + I +L + L+ + + S ++ ++G + + ++ + E G
Sbjct: 4 RTLLTIIVAALLVCSVAVAYKLTKSQAAGSSEESIATIGDKHITRQDWMKKMEDEYG--- 60
Query: 69 QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE---IARSPLF 125
K L+++++ +++ + L + + E I
Sbjct: 61 ------------------KSTLEDMINTQVVEKLAKKNKLTVSNSELEREFLLIKAVNNS 102
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+D+ + + ++ + E+ + +
Sbjct: 103 FYEDSHITEKEWKDQIRYNILLEELLTKDIDISDKEMQSFYNKNKELYQFDDSYRIRH 160
>gi|328542082|ref|YP_004302191.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[polymorphum gilvum SL003B-26A1]
gi|326411832|gb|ADZ68895.1| Peptidyl prolyl cis-trans isomerase D signal peptide protein
[Polymorphum gilvum SL003B-26A1]
Length = 287
Score = 44.8 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 46/131 (35%), Gaps = 1/131 (0%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
++ +A +L+ + EG +F ++ + + +
Sbjct: 142 EEISARHILVASKDEAAELIKKLD-EGADFAELATAHSSDGSAAGGGDLGYFTRGQMVPE 200
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ F+ P+E+ + V KV + + ++ + L Q + +D+ I
Sbjct: 201 FEAAAFALAAGEHSKEPVESQFGWHVIKVEDKRQQAAPSFEEVEAGLRQKLIRDIYTKRI 260
Query: 608 AYLKSQYSVTV 618
LK++ V +
Sbjct: 261 GELKAETPVEI 271
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 29/158 (18%), Positives = 62/158 (39%), Gaps = 4/158 (2%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
+ EL+A Y+ + E + ++ ++ EA E + L +G F +LA S
Sbjct: 123 TEAELKAAYDTEFAGFEGDEEISARHILVASKDEAAELIKKLDEGADFAELATAHSSDGS 182
Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
LG F++ + + F+LA + FG+ + V + + SF+
Sbjct: 183 AAGGGDLGYFTRGQMV-PEFEAAAFALAAGEHSKEPVESQFGWHVIKVEDKRQQAAPSFE 241
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDE 403
EV+ + ++ ++++ E + + E
Sbjct: 242 EVEAGLRQKLIRDIYTKRIGELKAETPVEILAKDAPAE 279
>gi|261403937|ref|YP_003240178.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
Y412MC10]
gi|261280400|gb|ACX62371.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
Y412MC10]
Length = 311
Score = 44.8 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 28/138 (20%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-------SGSSTVVSVGRQKVPFSSFIN 58
R+ W I L + W L FS +GS V S+ + + +
Sbjct: 3 RQEKGLWATVIVLTACVLGMGGWMLFSGGFSQEASPPWKTGSQPVASIQDRAITEDEW-- 60
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ + ++ G +++L +++ + + G++ V E
Sbjct: 61 -----VDELKKRYG--------------REMLMTMLNRHAVALEAKAKGIDVTTAEVETE 101
Query: 119 IARSPLFHGKDNKFSHDV 136
I +G +F ++
Sbjct: 102 IEVMSRSYGSKERFLSEM 119
>gi|226311741|ref|YP_002771635.1| hypothetical protein BBR47_21540 [Brevibacillus brevis NBRC 100599]
gi|226094689|dbj|BAH43131.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 246
Score = 44.8 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 21/231 (9%), Positives = 63/231 (27%), Gaps = 30/231 (12%)
Query: 8 ASRTWVAKIFLV-VLFVPFLIWGL-SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
+ + I L + + G + S + V +G + + K++ G
Sbjct: 30 FMKKFNVSILAASALVLGLAVAGCTPGKDSAFSADNPVAKIGNVTITQEQMYDKLKKDAG 89
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
K+++ ++++ Q G+ + +
Sbjct: 90 ---------------------KRVMADIITLELYKQEGAARGITVTDQELDARVNPVKEK 128
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV--GMFVGGMRPSNLLLDQAK 183
G S + F L + + E+E + ++ R + + +
Sbjct: 129 LG-----SPERFQQYLKDKQMTEQELREGVRAVMLRDKLFEKDNPITEEQIKEYYEKNKD 183
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
+F V+ + + + + ++K+ + +
Sbjct: 184 KFEGTFEEARPKVIEKVKSRNKRNNMDKWIEELYKKHNVQIMDKDLESEKQ 234
>gi|83589867|ref|YP_429876.1| hypothetical protein Moth_1019 [Moorella thermoacetica ATCC 39073]
gi|83572781|gb|ABC19333.1| Protein of unknown function DUF218 [Moorella thermoacetica ATCC
39073]
Length = 461
Score = 44.8 bits (103), Expect = 0.039, Method: Composition-based stats.
Identities = 27/238 (11%), Positives = 58/238 (24%), Gaps = 34/238 (14%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGS--STVVSVGRQKVPFSSFINSWKQE------ 63
+ K +V+ + L + V V Q + + +
Sbjct: 209 ILLKALIVMTLLSILAFTACARSSQSPKEIEEAVALVNGQPINKEALEKEMLRMQLMAEM 268
Query: 64 --------LGMISQKIGFV---VNSE----------RARSVGLDKKILDNLVSGATLDQF 102
+ ++ G ++ E ++ G + + LV L Q
Sbjct: 269 RVQSGTVSIDEFLKQSGRDWSKMSPEEKRYYLRAKRQSEMTGEKNEAFNRLVREEVLYQE 328
Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNK--FSHDVFVSRLAREGINEKEYIDHY---TK 157
G E + K + R EK++++ +
Sbjct: 329 AVKEGYEVSIDEARRRYQEIETLSQESLKEALKDAKAKEEIERLQEVEKKFMELMGFTSP 388
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
V + M S L + ++ + D +N +L Q
Sbjct: 389 EALTEYRVQRLMRTMPISRLREKFKADWGNKHPEIRGDEFRYMVENRWEDYTNELLRQ 446
>gi|330809994|ref|YP_004354456.1| peptidylprolyl isomerase [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327378102|gb|AEA69452.1| putative Peptidylprolyl isomerase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 322
Score = 44.8 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 12/128 (9%), Positives = 36/128 (28%), Gaps = 5/128 (3%)
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ +A L+ + +F ++ A + + Q+F
Sbjct: 183 EARSLAHVQAELLLERLDQFPGSFAELALKHSACPSKEQGGSLGQISKGQTVPELERQLF 242
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAY 609
+ P + P+E+ + V + G + + + + + + +
Sbjct: 243 TLPAG-LAGKPLESRYGWHVISIDQRIDGQPLPYEAVATAIRTQLQQGVWQKALVQYLQT 301
Query: 610 LKSQYSVT 617
L +
Sbjct: 302 LIGAADIR 309
>gi|260576764|ref|ZP_05844749.1| SurA domain protein [Rhodobacter sp. SW2]
gi|259021016|gb|EEW24327.1| SurA domain protein [Rhodobacter sp. SW2]
Length = 402
Score = 44.8 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 18/157 (11%), Positives = 43/157 (27%), Gaps = 19/157 (12%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K + V + + A V + +
Sbjct: 4 IKTVIFVFLLGLTGAIPAAAQDGPFAPRVY--VNDRVISQYELDQRIS------------ 49
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ +++ L+ L+ + ++ +V +A + S
Sbjct: 50 -FMTVLGLRENVEEVALNALIDERLQMTVAKQYNVKLTPKQVEAGMAE----FAGRAQLS 104
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ F++ LA G+ + + D T L ++V G
Sbjct: 105 TEEFLTALAPAGVEAQGFRDFVTAGLIWREIVRAKFG 141
Score = 38.7 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 8/88 (9%), Positives = 20/88 (22%), Gaps = 1/88 (1%)
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-VQEKDK 589
Q+ R D ++ + G + V ++
Sbjct: 313 AEQLLRETKPMAQVPSDIGLELAKLDPGESSTALVRGGNRVFLMLCNRIPVLDVPPSREA 372
Query: 590 FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ L +A L++ +
Sbjct: 373 VRAQLLNQRLAAYGAGYLADLRANAIIR 400
>gi|238923933|ref|YP_002937449.1| hypothetical protein EUBREC_1571 [Eubacterium rectale ATCC 33656]
gi|238875608|gb|ACR75315.1| Hypothetical protein EUBREC_1571 [Eubacterium rectale ATCC 33656]
Length = 329
Score = 44.8 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 12/173 (6%), Positives = 45/173 (26%), Gaps = 10/173 (5%)
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ Y Q EV + + K + A+ + + +
Sbjct: 142 SDIESAYEHYAIAQKL-YNSLSKGVDTEVSDEDARVIHIQKIFVKSKESADAVSQKLLSK 200
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
++F + T + + + F + Y +
Sbjct: 201 -EDFAAVASGSSEDSQTE-----LYAAKGTLPQEVEAVAFELGDGETSDMISTDDGYYFI 254
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ ++ ++ + Q ++ + + + +++++L
Sbjct: 255 KCISKL---DREKTEQNKVTILQKRQQEQFNDDYEHFVKKAGFSLNNDLWDSI 304
>gi|225850929|ref|YP_002731163.1| SurA N- domain family [Persephonella marina EX-H1]
gi|225645389|gb|ACO03575.1| SurA N- domain family [Persephonella marina EX-H1]
Length = 286
Score = 44.8 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 22/155 (14%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
++ L ++ + ++ S V+ V + V S + + G
Sbjct: 1 MRVLLSLILLVMMVVS-SAISEEKLLDKIVLVVNGKPVLKSEIELA--------KEWYGV 51
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E A+ L+ L Q E +G+ A V I R + S
Sbjct: 52 KSDKEAAKK----------LIDQIILAQAAEKVGIHATPTEVDNAILRLARM---NRLGS 98
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
+ F RL G+ + D + + + V ++
Sbjct: 99 VNEFKKRLEERGLVFSLFKDLIKREIVISKFVHIY 133
>gi|323485490|ref|ZP_08090836.1| hypothetical protein HMPREF9474_02587 [Clostridium symbiosum
WAL-14163]
gi|323401138|gb|EGA93490.1| hypothetical protein HMPREF9474_02587 [Clostridium symbiosum
WAL-14163]
Length = 332
Score = 44.8 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 28/263 (10%), Positives = 71/263 (26%), Gaps = 14/263 (5%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + + + T V+ + L + KI+
Sbjct: 45 KSEKGYSLPEIMVIAMTEQNRYEEICTDQIWNVEIAEEGENFASYLTGQIKNFMEELKIM 104
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ--IK 469
++ + + + E+AA + + + V Y + ++
Sbjct: 105 NLLAQDRNMSLSPEERSEMAAAAAEYFGNLTAEDIEHMGVSEEDVRAVFEDYCLAEKLVE 164
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
E D ++ + V + + A L L ++E +F + G S
Sbjct: 165 ELTKGIDLEVSDSEAKVITVMQAETADRQA---AENLSLAAAQENADFEKCASDAGLSAT 221
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
T + R + + F+ V NG YV+ +++ +
Sbjct: 222 TRQ-LGRKEE-----SQEFEDAAFALSAGQVSQVIESNGTYYVIKCISDY---DEEATAA 272
Query: 590 FISYLTQMMNKDLLDSVIAYLKS 612
+ + + + +
Sbjct: 273 RKKIIFEERKRKAFKEIYDSFRE 295
>gi|317046868|ref|YP_004114516.1| SurA domain-containing protein [Pantoea sp. At-9b]
gi|316948485|gb|ADU67960.1| SurA domain protein [Pantoea sp. At-9b]
Length = 431
Score = 44.8 bits (103), Expect = 0.040, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +IL+ + + + Q E GL+ ++ I N + D SR
Sbjct: 62 DDNTLRHQILERQIMDSIVLQMGEKAGLQISDQQLDEAIQNI----AGQNHMTLDQLRSR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+A +GIN EY K + ++V V
Sbjct: 118 IAYDGINYNEYRAQIRKEMMISEVRNNEVR 147
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 23/360 (6%), Positives = 85/360 (23%), Gaps = 9/360 (2%)
Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLA 326
Q++ + E ++ + + S+ ++
Sbjct: 67 RHQILERQIMDSIVLQMGEKAGLQISDQQLDEAIQNIAGQNHMTLDQLRSRIAYDGINYN 126
Query: 327 DSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE 386
+ + K+ + V + + + + +
Sbjct: 127 EYRAQIRKEMMISEVRNNEVRRRVTILPQEVDTLAKQIGSQNTQGTELNVSQILLPLPEN 186
Query: 387 DYKRLEEFLALGTSMDEISRREKIVSIDLPLV---DFAGKDVKGKEVAAIPYKEQLLFRV 443
++ + ++ L + D + I L +
Sbjct: 187 PTQQQVDDQEALARQLVGELKKGADFGKLAVTYSADPQALKGGNMGWSKIEELPSLFSQA 246
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSK 502
+ G ++ +++ + EV + + T ++ +K
Sbjct: 247 LATAQKGDVVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPILTDDQARAK 306
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVK 561
++ + F K + NQ + + F +
Sbjct: 307 LEEIAADIRSGKITFAAAAKQYSDDPGSANQGGDLGWTSPEVFDPAFRDALMRLQKGQTS 366
Query: 562 CFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P+ + + + ++ + +K++ L + + + ++ V +
Sbjct: 367 Q-PVHSSFGWHLIQLLDTRQVDKTDAAQKERAYRLLFNRKFAEEAQTWMQEQRASAYVKI 425
>gi|321314718|ref|YP_004207005.1| molecular chaperone lipoprotein [Bacillus subtilis BSn5]
gi|320020992|gb|ADV95978.1| molecular chaperone lipoprotein [Bacillus subtilis BSn5]
Length = 294
Score = 44.8 bits (103), Expect = 0.041, Method: Composition-based stats.
Identities = 22/171 (12%), Positives = 47/171 (27%), Gaps = 33/171 (19%)
Query: 483 LTDVKKDWKTVKTAE---------------------------EVSSKANQLVLEYSKEGK 515
VK + T K A+ K + + + K+G+
Sbjct: 102 KEQVKYELLTQKAAKDNIKVTDDEIKEYWEGLKGQIRASHILVADKKTAEEIEKKLKKGE 161
Query: 516 NFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
F + K + + + +N+ F V P++ Y
Sbjct: 162 KFDALAKEYSTDTGSATNGGELGWISKDNEQLDATFRKAAFKLKTNEV-SDPVKTQFGYH 220
Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDN 621
+ K T + K + S + + D + + + + + V D
Sbjct: 221 IIKKTEERGKYEDMKKELKSEVLEQKLNDSNAVQEAVQKVMKKADIEVKDK 271
>gi|308182349|ref|YP_003926476.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori PeCan4]
gi|308064534|gb|ADO06426.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori PeCan4]
Length = 299
Score = 44.8 bits (103), Expect = 0.041, Method: Composition-based stats.
Identities = 17/198 (8%), Positives = 50/198 (25%), Gaps = 6/198 (3%)
Query: 427 GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDV 486
+ A + ++ F + + +P+ ++ + +E
Sbjct: 104 PEFKAMMEAVKKQALVEFWAKKQAEEVKKIQIPEKEMQDFY--DANKDQLFVKQEAHARH 161
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
+ +S Q + + + S N + +
Sbjct: 162 ILVKTEDEAKRIISEIDKQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAP 221
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD-- 604
D F+ P++ Y + + + D+ + M+ + L
Sbjct: 222 DFSKAAFALTPGNYTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQERLFQER 281
Query: 605 --SVIAYLKSQYSVTVHD 620
I L+ + ++
Sbjct: 282 MNQRIEELRKHAKIVINK 299
>gi|302345884|ref|YP_003814237.1| PPIC-type PPIASE domain protein [Prevotella melaninogenica ATCC
25845]
gi|302149581|gb|ADK95843.1| PPIC-type PPIASE domain protein [Prevotella melaninogenica ATCC
25845]
Length = 474
Score = 44.8 bits (103), Expect = 0.042, Method: Composition-based stats.
Identities = 40/329 (12%), Positives = 88/329 (26%), Gaps = 33/329 (10%)
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLG----SFSKEYIPDVSLADSIFSLAKKGDFTPVI 342
+ +L+ G F +LA++ ++ G K + K G+ + +
Sbjct: 157 YNALRGGADFAELAKKYSTDVNSAMNGGQLLHLQKGQTVPE--FEKALFALKPGEISAPV 214
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
FGY I + +++ ++ +I + + E++ + T
Sbjct: 215 LSPFGYHIIKMGGR--ESFPTYETLRPEIMQYIEMQGLREQIIDQKLDSIVESEGKTVTQ 272
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ K+ S++ + Y + LL + K +
Sbjct: 273 DQLLDRKLASLEEKDASMKNLIRE--------YHDGLLMIEMSNREVWDKAAKDEKALEA 324
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
Y K+ E K E + V K
Sbjct: 325 YFRKHKKQYK------WTEPRFKGIAYHVKTKEDVEAVKACVRHVPFNQWAEKLRDKFNA 378
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
+ + I R +N D VF + Y + V K+
Sbjct: 379 DNTIRIRVEKGIFRKG-DNALVDRD----VFGAKTTVKPV------NGYPIDAVFGKKIK 427
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
+ + + ++L + + L+
Sbjct: 428 APEGMEDVRDLVVSNYQEELEKAWVEALR 456
>gi|113461696|ref|YP_719765.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Haemophilus somnus
129PT]
gi|112823739|gb|ABI25828.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Haemophilus somnus
129PT]
Length = 314
Score = 44.8 bits (103), Expect = 0.042, Method: Composition-based stats.
Identities = 19/193 (9%), Positives = 59/193 (30%), Gaps = 4/193 (2%)
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
+++A ++ + G ++++ L + + + V +
Sbjct: 120 QQIAYQILISEVRNQAIGSSVNVTREEIQDLGLKLFKQAKKQGKEKKVTAPEYNVR-HIL 178
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + +K Q+ + F D L+ +
Sbjct: 179 LKLNPLLNDAQAKAKLTQIRADILANKITFADAALKYSKDYLSGADGGSLGFMFPEAYVP 238
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS-- 605
++V + V P + + + +VT+ + + + Q++N+ L ++
Sbjct: 239 EFAKVIRASKKGVISTPFKTEFGWHILEVTDIRNADITREAYMQEAYQQIVNQQLQEASG 298
Query: 606 -VIAYLKSQYSVT 617
I L+ + +
Sbjct: 299 DWIKALRKRAHIQ 311
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 21/151 (13%)
Query: 22 FVPFLIWGLSDA-LFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
V F I GL + + + V +V + S + +G N+E
Sbjct: 8 AVLFSIIGLLSITITAQAAERVVATVDGNPILESQV-----------KKVLGKRANNEEN 56
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L++++ + + I+++G++ V I N + F+
Sbjct: 57 -----RQIALNSIIDDLLVQKAIQELGIKVAPAHVDSVIENIAA----QNGLTFGQFLDV 107
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
L +GIN + Y + ++V +G
Sbjct: 108 LDYQGINYQAYRQQIAYQILISEVRNQAIGS 138
>gi|229043011|ref|ZP_04190742.1| Foldase protein prsA 2 [Bacillus cereus AH676]
gi|228726351|gb|EEL77577.1| Foldase protein prsA 2 [Bacillus cereus AH676]
Length = 285
Score = 44.8 bits (103), Expect = 0.042, Method: Composition-based stats.
Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V K + K ++A ++ + G +F ++ K LL+ ++ +
Sbjct: 125 TEKDVKDHYKPEIKASHILVSDENEAKEIKSKLD-AGASFEELAKQESQDLLSKDKGGDL 183
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + + + V + P+++ Y V K+T+ K + KD L
Sbjct: 184 GYFNSGTMAPEFETAAYKLNVGQISN-PVKSSNGYHVIKLTDKKALKPYDEVKDSIRKNL 242
Query: 595 TQMMNKD--LLDSVIAYLKSQYSVTVHDN 621
+ D ++ + ++ ++D+
Sbjct: 243 EEERTADPVFSKKLLQEELKKANIKINDS 271
>gi|126698956|ref|YP_001087853.1| putative peptidyl-prolyl isomerase [Clostridium difficile 630]
gi|254974902|ref|ZP_05271374.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-66c26]
gi|255092291|ref|ZP_05321769.1| putative peptidyl-prolyl isomerase [Clostridium difficile CIP
107932]
gi|255100375|ref|ZP_05329352.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-63q42]
gi|255306317|ref|ZP_05350488.1| putative peptidyl-prolyl isomerase [Clostridium difficile ATCC
43255]
gi|255314029|ref|ZP_05355612.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-76w55]
gi|255516709|ref|ZP_05384385.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-97b34]
gi|255649808|ref|ZP_05396710.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-37x79]
gi|255655366|ref|ZP_05400775.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-23m63]
gi|306519909|ref|ZP_07406256.1| putative peptidyl-prolyl isomerase [Clostridium difficile
QCD-32g58]
gi|115250393|emb|CAJ68215.1| putative peptidyl-prolyl isomerase [Clostridium difficile]
Length = 251
Score = 44.8 bits (103), Expect = 0.042, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 51/161 (31%), Gaps = 7/161 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V + E + + + + + KA +++ + E +F D
Sbjct: 92 VNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEISFEDAALKHS 151
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + + VFS V P++ Y + K+ + +
Sbjct: 152 SCPSKDMGGDLGTFGRGQMVPEFEEAVFSMAKGEV-SEPVKTQFGYHIIKLEDLQESTES 210
Query: 586 EKDKFISYLTQMM----NKDLLDSVIAYLKSQYS--VTVHD 620
D+ + + + + ++ + I L ++Y V +D
Sbjct: 211 TFDEVKAEVEKSLLYQKQNEVYGNKINALNAKYGNLVKYND 251
>gi|108762810|ref|YP_633122.1| putative lipoprotein [Myxococcus xanthus DK 1622]
gi|108466690|gb|ABF91875.1| putative lipoprotein [Myxococcus xanthus DK 1622]
Length = 361
Score = 44.8 bits (103), Expect = 0.042, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 40 SSTVVSVG-RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ V + G QK+ + ++ L + ++ L K+ LD +V+
Sbjct: 44 DTVVATFGDGQKITYKELSERLQEPLANLEKQ-----------KSQLLKRGLDGMVTEKL 92
Query: 99 LDQFIEDIGLEADHGRVWGEIAR 121
+D + GL + EI
Sbjct: 93 VDAEAKKRGLS-QEAYLKAEIDD 114
>gi|260584542|ref|ZP_05852288.1| foldase protein PrsA [Granulicatella elegans ATCC 700633]
gi|260157565|gb|EEW92635.1| foldase protein PrsA [Granulicatella elegans ATCC 700633]
Length = 316
Score = 44.8 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 41/128 (32%), Gaps = 9/128 (7%)
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPI 565
+++ K+G +F + K + ++ + + + V + P+
Sbjct: 172 LIKQLKDGADFDTLAKENSTDKTSAENGGKIGPFKRSDMVKEFADAAYGLKVGEITEEPV 231
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD------SVIAYLKSQYSVTVH 619
Y V K+ S L + + L SV++ L V +
Sbjct: 232 LTQYGYHVIKL--VDKPEKGSLSDVRSTLEDELLAEKLKDTATIHSVVSSLVKNADVKIT 289
Query: 620 DNLIQRYL 627
D+ ++ L
Sbjct: 290 DDTLKNAL 297
>gi|254778889|ref|YP_003056994.1| Peptidyl-prolyl cis-trans isomerase C (PPIase) (Rotamase); putative
signal peptide [Helicobacter pylori B38]
gi|254000800|emb|CAX28724.1| Peptidyl-prolyl cis-trans isomerase C (PPIase) (Rotamase); putative
signal peptide [Helicobacter pylori B38]
Length = 299
Score = 44.8 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 20/255 (7%), Positives = 60/255 (23%), Gaps = 14/255 (5%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
M + + K E+ + ++ + + L ++ +
Sbjct: 55 KSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLDQTPEFKAMMEAVK 114
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
A+ F + + + K + + +E
Sbjct: 115 KQALVE-----FWAKKQAEEVKKIQIPEKEMQDFYNANKDQ-----LFVKQEAHARHILV 164
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +S Q + + + S N + + D
Sbjct: 165 KTEDEAKRIISEIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFS 224
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----S 605
F+ P++ Y + + + ++ + M+ + L
Sbjct: 225 KAAFALTPGDYTKTPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQ 284
Query: 606 VIAYLKSQYSVTVHD 620
I L+ + ++
Sbjct: 285 RIEELRKHAKIVINK 299
>gi|289809575|ref|ZP_06540204.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 250
Score = 44.8 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 17/243 (6%), Positives = 58/243 (23%), Gaps = 8/243 (3%)
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
+ ++ + ++ + K+ D I +
Sbjct: 8 NPTSEQVNDAQRQAESIVEEARNGADFGKLAI--TYSADQQALKGGQMGWGRIQELPGIF 65
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEV 499
+ + G ++ ++ + EV + + ++
Sbjct: 66 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 125
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
K ++ + F K + NQ + F +
Sbjct: 126 RLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKG 185
Query: 559 MVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ P+ + + + ++ +KD+ L + + + ++
Sbjct: 186 QI-SAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAY 244
Query: 616 VTV 618
V +
Sbjct: 245 VKI 247
>gi|164686191|ref|ZP_02210221.1| hypothetical protein CLOBAR_02629 [Clostridium bartlettii DSM
16795]
gi|164601793|gb|EDQ95258.1| hypothetical protein CLOBAR_02629 [Clostridium bartlettii DSM
16795]
Length = 198
Score = 44.8 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 26/186 (13%), Positives = 57/186 (30%), Gaps = 4/186 (2%)
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
K+++ + G + +Y + R + D +
Sbjct: 17 KQRIKKELMGAKYLEEYSNVSEDEARNYFEKNKNDYKQIRASHILISNYDSNNKEVSDDK 76
Query: 496 AEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSG 555
EE A + VL+ + +G++F + K + + FS
Sbjct: 77 KEENKKTAEE-VLKLALDGEDFATLAKEYSDDSSASKGGDLGYFTQDEMVSAFSKAAFSL 135
Query: 556 PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ +E Y + K T K Q+ D L + + +++ L ++Y
Sbjct: 136 KTGEIYNKVVETSSGYHIIKKTGEK---DQDFDDVKDDLIKTLESTKQSTLMQDLYTKYD 192
Query: 616 VTVHDN 621
V + +
Sbjct: 193 VQIKNQ 198
>gi|315586175|gb|ADU40556.1| peptidyl-prolyl cis-trans isomerase [Helicobacter pylori 35A]
Length = 299
Score = 44.8 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 21/255 (8%), Positives = 60/255 (23%), Gaps = 14/255 (5%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
M + + K E+ + ++ + + L ++ +
Sbjct: 55 KSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDQTPEFKAMMEAVK 114
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
A+ F + + + K + + +E
Sbjct: 115 KQALVE-----FWAKKQAEEVKKIQIPEKEMQDFYNANKDQ-----LFVKQEAHARHILV 164
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +S Q + + + S N + + D
Sbjct: 165 KTEDEAKRIISEIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFS 224
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----S 605
F+ P++ Y + + + D+ + M+ + L
Sbjct: 225 KAAFALTPGDYTKTPVKTEFGYHIIYLISKDSPVTYTYDQAKPTIKGMLQEKLFQERMNQ 284
Query: 606 VIAYLKSQYSVTVHD 620
I L+ + ++
Sbjct: 285 KIEELRKHAKIVINK 299
>gi|291535316|emb|CBL08428.1| PPIC-type PPIASE domain [Roseburia intestinalis M50/1]
gi|291538114|emb|CBL11225.1| PPIC-type PPIASE domain [Roseburia intestinalis XB6B4]
Length = 329
Score = 44.8 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 21/181 (11%), Positives = 49/181 (27%), Gaps = 7/181 (3%)
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
E ++ L + + + K + EEV D + + +
Sbjct: 122 AAAEYYASLSKEENTYLEVTESDISEYYQHYALAQKLYNSLTNSVNEEVSDDEARVIEIM 181
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ S+KA+ + + + G +F + N + R + + F
Sbjct: 182 QIFVADSTKASDVAAKLER-GDDFASVANNYNELSSIQTTVARDE-----LPKEVEEVAF 235
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
+ Y + + K + + D+ + +A L S
Sbjct: 236 NLDNGQTSSMIQAGKGFYFIKCLNKYNEELTEANKSNIVEKREKEAFDDVYNQFVAGLNS 295
Query: 613 Q 613
Sbjct: 296 S 296
>gi|257465500|ref|ZP_05629871.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus minor 202]
gi|257451160|gb|EEV25203.1| peptidyl-prolyl cis-trans isomerase SurA [Actinobacillus minor 202]
Length = 317
Score = 44.8 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 23/232 (9%), Positives = 69/232 (29%), Gaps = 9/232 (3%)
Query: 393 EFLALGTSMDEISRREKIV-SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
++ + +++EI+ R + L +D+ G + + ++ ++ V + S
Sbjct: 83 DYRRVDQAIEEIAVRNGLTYGQLLDALDYQGITLN--QYRQQIAQQMMMEAVRHQSIGKS 140
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT---VKTAEEVSSKANQLVL 508
+ K+ + + + + V + +K N ++
Sbjct: 141 IQVNPEDVRAQAQALMAKDKAAGKLKSVSGTEPRISHILIKTTPVLNDAQAKAKLNSIIA 200
Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
+ F + K ++ + + + + P ++
Sbjct: 201 DIKAGKTTFEEAAKANSVDYVSAADGGDLGFNFLDIYDPAFANAAAKAKQGQITAPFKSQ 260
Query: 569 LSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + KVT+ + G E K L + + L+ ++
Sbjct: 261 FGWHILKVTDYRQGDRTEDAYAQKAYEQLANQQAEAASKDWVKALRKTANIQ 312
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 20/173 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L V F+ + + +V + S + ++A
Sbjct: 9 LLVAFVATLGLSQSLLAAEERVIATVDGNMIMESQVTRAL----------------GKKA 52
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ K L+N++ + + I+ G++ D+ RV I N ++ +
Sbjct: 53 NTEANRKAALENIIDEMLVQKAIQQSGVKVDYRRVDQAIEEI----AVRNGLTYGQLLDA 108
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
L +GI +Y + + V +G N +A+ +
Sbjct: 109 LDYQGITLNQYRQQIAQQMMMEAVRHQSIGKSIQVNPEDVRAQAQALMAKDKA 161
>gi|228932540|ref|ZP_04095421.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228827230|gb|EEM72983.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 285
Score = 44.8 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 31/267 (11%), Positives = 90/267 (33%), Gaps = 20/267 (7%)
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
K A T ++ + K+L++ + +++ + D +
Sbjct: 21 CGQKDSSATVATATDSTITKSDFEKQLKDRYGKDMLYEMMAQDVITKKYKVSEDDVEKEV 80
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
K K +K L + L + + E ++V
Sbjct: 81 QKAKSQYGDQFKNILKNNGLKDEADFKNQIKFKLAMNEAIKKSVTE---------KDVKA 131
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF- 543
K + K ++A ++ + G +F ++ K LL+ + + N
Sbjct: 132 HYKPEIKASHILVSDENEAKEIKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGR 190
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603
+ + + V + P+++ Y + K+T+ K +Q D+ + + + ++ +
Sbjct: 191 MAPEFETAAYKLNVGQISN-PVKSPNGYHIIKLTDKK--ELQPYDEVKDSIRKNLEEERI 247
Query: 604 DS------VIAYLKSQYSVTVHDNLIQ 624
+ ++ + ++ ++D+ ++
Sbjct: 248 ANPTFSHKLLQKELKKANIKINDSELE 274
>gi|228976219|ref|ZP_04136699.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228783511|gb|EEM31610.1| Foldase protein prsA 1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
Length = 279
Score = 44.8 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 7/146 (4%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+E+ K K + A ++ + G++F + K + + +
Sbjct: 122 TEKEMKDYYKPKLKASHILVKDEKTAKEIKEKL-NNGEDFAALAKQYSEDPGSKEKGGEL 180
Query: 538 DNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ V PI++ Y + K+T K QEKD L
Sbjct: 181 PEFGPGEMDSKFEEAAYKLEAGQV-SDPIKSSHGYHIIKLTEKKELKPFDQEKDNIRKEL 239
Query: 595 TQMMNKDLLDS--VIAYLKSQYSVTV 618
Q ++D L + + +
Sbjct: 240 EQKRSQDQQWQQQFFKDLFKKADIKI 265
>gi|153003349|ref|YP_001377674.1| DSBA oxidoreductase [Anaeromyxobacter sp. Fw109-5]
gi|152026922|gb|ABS24690.1| DSBA oxidoreductase [Anaeromyxobacter sp. Fw109-5]
Length = 354
Score = 44.8 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V +G Q + K++L + Q + + L ++ L+ ++ +++
Sbjct: 40 PVAKIGAQTITAGELDELVKKDLDQLEQ-------QYQEQRYQLRRQALEAMIRKRIVEE 92
Query: 102 FIEDIGLEADHGRVWGEI 119
+ L V +I
Sbjct: 93 KAKAQNLS-PEEMVQRDI 109
>gi|220928515|ref|YP_002505424.1| hypothetical protein Ccel_1085 [Clostridium cellulolyticum H10]
gi|219998843|gb|ACL75444.1| hypothetical protein Ccel_1085 [Clostridium cellulolyticum H10]
Length = 209
Score = 44.8 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 29/212 (13%), Positives = 68/212 (32%), Gaps = 34/212 (16%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVS------------------GSSTVVSVGRQKVPFSSF 56
K+ ++ + LI+G+ FS S G V ++ + + F
Sbjct: 9 KVVIIAVTAVILIFGIVGYTFSKSESAAKFFGIKQSQTLTKAGKDIVATINGENITKKGF 68
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
N++K + + DK+ILD +V + G +V
Sbjct: 69 -NTYKAMINS--------------ENKLSDKEILDRIVESHVVYTQAVKEGFRVSDHQVE 113
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I + D+K + F ++ ++E EY + + + G + ++
Sbjct: 114 AAIKSAREEISMDSK-QYKAFKEYISGLKMSEDEYWESVKPTYKKALIRGAYKNALKQKF 172
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ ++ ++ + + + A
Sbjct: 173 KKVKLEDPNEVNSKFSEFYDREIKDLISQAKI 204
>gi|92117866|ref|YP_577595.1| hypothetical protein Nham_2343 [Nitrobacter hamburgensis X14]
gi|91800760|gb|ABE63135.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
Length = 319
Score = 44.8 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 19/228 (8%), Positives = 51/228 (22%), Gaps = 18/228 (7%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
F + + + S V V + + + Q +
Sbjct: 16 FAVLSFACLNAPLHAQSVAVMVNGEPITSFDIEQ-----RSRLIQISTHKTPT------- 63
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
++++D L++ + + G+ + + A G + S + LA +
Sbjct: 64 -RQQVIDELINEKVKVKEAKKFGVNPTSADIDQQYASM----GARMRMSPEQLTKSLASQ 118
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
G+ L +V D + +
Sbjct: 119 GVRPDTIKARLKADLVWGSLVRGRFKDSLLV-SDRDVNEALRNSGEDQSKTEGFEYQMRP 177
Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ + + +R+ + + E
Sbjct: 178 VVLVVPRGAAASVMESRRKEADALRERVQSCADATRIFKAMRNATIRE 225
>gi|254476481|ref|ZP_05089867.1| ppic-type ppiase domain protein [Ruegeria sp. R11]
gi|214030724|gb|EEB71559.1| ppic-type ppiase domain protein [Ruegeria sp. R11]
Length = 421
Score = 44.8 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 8/123 (6%)
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASL-LTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+A + + K G +L + ++R+ D ++
Sbjct: 300 RAPEALAAAQKLTGQIDTCDDLYGVALGQDPSVLDRVTLAPSEIPQDIAIELAKLDPGET 359
Query: 561 KCFPIENGLSYVVF-----KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
N +V + ++ + LTQ DS++ LK+
Sbjct: 360 STALTRNNGQTLVVLMMCGRTAEVNA--EASREAVANALTQQRLGAFADSLLEQLKADAR 417
Query: 616 VTV 618
+ +
Sbjct: 418 IDI 420
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 17/132 (12%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
S V+V V + + +K ++L+
Sbjct: 46 SPAVTVNDSVVTNYELQQ-----RARFLALLREPGDP--------LEKAREDLIEDRLKL 92
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
+ + G++ V + S F++ L G++ + D ++
Sbjct: 93 EVLAQAGIDPTDEEVTAGMTEL----AGRANLSLQEFLNVLRENGVDPQTLRDFSRVGIA 148
Query: 161 RTDVVGMFVGGM 172
VG G
Sbjct: 149 WRGYVGSRYIGQ 160
>gi|163815686|ref|ZP_02207058.1| hypothetical protein COPEUT_01866 [Coprococcus eutactus ATCC 27759]
gi|158448991|gb|EDP25986.1| hypothetical protein COPEUT_01866 [Coprococcus eutactus ATCC 27759]
Length = 335
Score = 44.8 bits (103), Expect = 0.046, Method: Composition-based stats.
Identities = 32/339 (9%), Positives = 80/339 (23%), Gaps = 20/339 (5%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN----- 76
+ ++ G + + V Q + + K G V
Sbjct: 6 VIGMMLVGCGGNGNADTEKEVVFRYNGQDIYIDEVYVYARTVKERYESKYGKDVWGQSIV 65
Query: 77 ----SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
E ++ + +V TL ++ G+ + +
Sbjct: 66 TDDGLEMNAEDSARRETISRIVKTKTLITKSDEYGISLTDSE--QRMQEQDAEKFYELLT 123
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ L + + + T V+ + + +FE S
Sbjct: 124 DEQIAEVGLEENTVKQ-VLEESALADKIYTYVMKQSSTEISDEQARMSTFYDMFFECYSE 182
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
D + + D + + + + +S DE
Sbjct: 183 DDFGNITLYPQSKIDVQKKKADEAYAAIVEESDNSNLNISFLGSAKSLKYAGTHTMSRDE 242
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
+ + Y ++ + + + I L +E + + L
Sbjct: 243 IVSTYGQDTLDILYS--------LSDGDISPVVQTEYGYHIFQMISLTDETATAENKEKL 294
Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
+ D ++D I L ++ + I+
Sbjct: 295 TEAADGEYYDNLMSDWIDELDSSYSYSKRVDMDVYNKIS 333
>gi|326391575|ref|ZP_08213106.1| hypothetical protein TheetDRAFT_2347 [Thermoanaerobacter
ethanolicus JW 200]
gi|325992405|gb|EGD50866.1| hypothetical protein TheetDRAFT_2347 [Thermoanaerobacter
ethanolicus JW 200]
Length = 241
Score = 44.8 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 13/176 (7%), Positives = 39/176 (22%), Gaps = 12/176 (6%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + + + F + ++ +L+ LV
Sbjct: 62 NEGDVIAEANGIPIYKNEFELRKGLTFA------------SEGQVNDINNFVLNKLVREK 109
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ L+ + I + + + + A E+ + D+
Sbjct: 110 VKEYLAMKYNLKVSEDEINSYIEKEKQQFKEFPEAEGKLKELISASGMTYEEYWNDYERY 169
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
+ R + + + + K+ V A +
Sbjct: 170 NVKRMLLFDKLYNAIINEGIKNGELKKTDKMTIEVQNEYKKYFDNIIDQYVKQAKI 225
>gi|270308377|ref|YP_003330435.1| protein export protein [Dehalococcoides sp. VS]
gi|270154269|gb|ACZ62107.1| protein export protein [Dehalococcoides sp. VS]
Length = 421
Score = 44.8 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 38/406 (9%), Positives = 112/406 (27%), Gaps = 27/406 (6%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSFINSW 60
+K + + L V+ + + G+ +TV++VG K + ++
Sbjct: 24 QKKRQRIIFATGLSVIGIVLALVGIGVYKGWYVEQYKPMHTTVLTVGDTK-----YNVAY 78
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ + G + + + + + + ++G + I
Sbjct: 79 --FVDALKHFTGGDST----YAYYFIDAVAERIQLNQLMVEKAAEMGYTISEDEIDTAIE 132
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ L D+ + L + + + + + + + M + ++ +L
Sbjct: 133 ENSLNDVPAV---RDIVRASLLTNMLKTEYFDPQVPQTAEQREALAMLLESENAASEVLA 189
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ L + Y + ++ +
Sbjct: 190 GITTDEEFAAKAAELSLESNTKTDEGAIDFKP----ANTITSLYGSAILEKYVFSTTGYD 245
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ + + + E+ E ++ P+++ A E L+ G+ + LA
Sbjct: 246 YTLVQDADVSKQRAYWLIEVLERKTDSEQIHTLGMLLPSEQVALEVKARLEAGEDWGDLA 305
Query: 301 EEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
E + + + + +P+ + + I Y +
Sbjct: 306 VEYSQLANVEENRGDMDWITFSSVPENVADIIFATDVELNTVLDPIQDDTNYTRGGCWIV 365
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
+ +E+ +D + K + + + L S D
Sbjct: 366 RLKSIDENRELNEDDRTLLINNKLEQWTTDLKNANLDKLTNTFSDD 411
>gi|260682966|ref|YP_003214251.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
gi|260686564|ref|YP_003217697.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
gi|296451354|ref|ZP_06893092.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
gi|296880296|ref|ZP_06904261.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
gi|260209129|emb|CBA62320.1| putative peptidyl-prolyl isomerase [Clostridium difficile CD196]
gi|260212580|emb|CBE03572.1| putative peptidyl-prolyl isomerase [Clostridium difficile R20291]
gi|296259770|gb|EFH06627.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP08]
gi|296428739|gb|EFH14621.1| peptidyl-prolyl cis-trans isomerase [Clostridium difficile NAP07]
Length = 261
Score = 44.8 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 20/161 (12%), Positives = 51/161 (31%), Gaps = 7/161 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V + E + + + + + KA +++ + E +F D
Sbjct: 102 VNVTEDEKVKFFEANKSSFSKPESATAKHILVDSDEKAKEILAQIKSEEISFEDAALKHS 161
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + + VFS V P++ Y + K+ + +
Sbjct: 162 SCPSKDMGGDLGTFGRGQMVPEFEEAVFSMAKGEV-SEPVKTQFGYHIIKLEDLQESTES 220
Query: 586 EKDKFISYLTQMM----NKDLLDSVIAYLKSQYS--VTVHD 620
D+ + + + + ++ + I L ++Y V +D
Sbjct: 221 TFDEVKAEVEKSLLYQKQNEVYGNKINALNAKYGNLVKYND 261
>gi|17546463|ref|NP_519865.1| isomerase rotamase signal peptide protein [Ralstonia solanacearum
GMI1000]
gi|17428761|emb|CAD15446.1| putative isomerase rotamase signal peptide protein [Ralstonia
solanacearum GMI1000]
Length = 255
Score = 44.8 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 60/148 (40%), Gaps = 3/148 (2%)
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ K ++D+L+ +YEK K ++ + + ++ + +A LK G F +
Sbjct: 91 FEDYVKNSPTTDDDLRKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEE 150
Query: 299 LAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A+ Q K + G P + ++ L K + FG+ + + +
Sbjct: 151 IAKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEVTQTPVKTQFGWHVIRLDD 210
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEK 383
+ + +F++VK + M + ++
Sbjct: 211 TRDAKIPAFEDVKPQLLEMMMGDQNWQR 238
>gi|324997548|ref|ZP_08118660.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudonocardia sp.
P1]
Length = 475
Score = 44.8 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 6/128 (4%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEM 559
A Q +L + G+ F D+ + A T + F
Sbjct: 327 EAAAQQILGDLQGGRPFADVARARSADAATREAGGAIGTLAAAQLEKPFADAAFGAEPN- 385
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN----KDLLDSVIAYLKSQYS 615
V P++ + V V+ + + L Q + D + +
Sbjct: 386 VPFGPVKTQHGWNVGVVSEVQAAVPADLQTVREPLRQRLQGERSADAWQAFLGNRLDDAG 445
Query: 616 VTVHDNLI 623
V +D +
Sbjct: 446 VRYNDAYV 453
>gi|309791442|ref|ZP_07685948.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
trichoides DG6]
gi|308226521|gb|EFO80243.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
trichoides DG6]
Length = 363
Score = 44.8 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 28/145 (19%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + + VG + F+ ++ + G V++ +L L+
Sbjct: 101 TSTEPITQVGDAVITRGEFVRAY---------QPGDEVSA-----------VLKQLIQVE 140
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
L Q G+ + + EIA G + + F + LA I +
Sbjct: 141 LLLQQAGVEGVTVEASELDAEIAAIKSSFG-----TPEEFTAMLAANQIES---EEAMRS 192
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQA 182
++ R ++ V + +
Sbjct: 193 IIERNMLIDKMVLSHTTMEQVHARH 217
>gi|299066760|emb|CBJ37954.1| Putative Peptidylprolyl isomerase; exported protein [Ralstonia
solanacearum CMR15]
Length = 265
Score = 44.8 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 60/148 (40%), Gaps = 3/148 (2%)
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ K ++D+L+ +YEK K ++ + + ++ + +A LK G F +
Sbjct: 101 FEDYVKNSPTTDDDLRKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEE 160
Query: 299 LAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A+ Q K + G P + ++ L K + FG+ + + +
Sbjct: 161 IAKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEVTQTPVKTQFGWHVIRLDD 220
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEK 383
+ + +F++VK + M + ++
Sbjct: 221 TRDAKIPAFEDVKPQLLEMMMGDQNWQR 248
>gi|229016515|ref|ZP_04173456.1| Foldase protein prsA 2 [Bacillus cereus AH1273]
gi|229022723|ref|ZP_04179247.1| Foldase protein prsA 2 [Bacillus cereus AH1272]
gi|228738535|gb|EEL89007.1| Foldase protein prsA 2 [Bacillus cereus AH1272]
gi|228744782|gb|EEL94843.1| Foldase protein prsA 2 [Bacillus cereus AH1273]
Length = 269
Score = 44.8 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 22/249 (8%), Positives = 72/249 (28%), Gaps = 15/249 (6%)
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
A+ K E ++ + + V + A
Sbjct: 15 ATTTNSTITKSDFEKQLKDRYGKDMLYEMVAQDVITKKYKVSDDAVDKEVEKAKNQYGDQ 74
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
+ + D + + E+I +++ K + K
Sbjct: 75 FKAALENNRLKDEK---DFQDQIRFKLALNEAIKQSV-TEKDIKDHYKPEIKASHILVSD 130
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
++A ++ + G +F ++ K L+ + + + +
Sbjct: 131 ENEAKEIKKKLDT-GASFEELAKQESQDSLSKDNGGDLGYFRAGKMTPEFEKAAYKLKPG 189
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD------LLDSVIAYLKS 612
+ P+++ Y + K+T+ K ++ D+ + + + ++ ++
Sbjct: 190 QISN-PVKSPNGYHIIKLTDKK--DLEPYDEVKGSIRKDLEEERIADPSFGQKLLQDELK 246
Query: 613 QYSVTVHDN 621
+ + ++D+
Sbjct: 247 KADIKINDS 255
>gi|325001686|ref|ZP_08122798.1| hypothetical protein PseP1_23131 [Pseudonocardia sp. P1]
Length = 288
Score = 44.8 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 6/134 (4%)
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
+ + +A QL E + G G + +
Sbjct: 143 RLSVTADIAVAQTREEAEQLAREIAAGGARADSALAGAGTAQRD------LAIRPAETPQ 196
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
++ + P V FP+ G +VV +VT+ ++G + L Q + +
Sbjct: 197 AALTPLIGLPAGQVAAFPLGTGQGWVVVRVTDRRLGEPVPGASATAGLDQQTLAEAGVRL 256
Query: 607 IAYLKSQYSVTVHD 620
+ V ++
Sbjct: 257 LTPTALDAGVELNP 270
>gi|308183972|ref|YP_003928105.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
SJM180]
gi|308059892|gb|ADO01788.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
SJM180]
Length = 299
Score = 44.8 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 20/255 (7%), Positives = 60/255 (23%), Gaps = 14/255 (5%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
M + + K E+ + ++ + + L ++ +
Sbjct: 55 KSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTPEFKAMMEAVK 114
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
A+ F + + + K + + +E
Sbjct: 115 KQALVE-----FWAKKQAEEVKKVQIPEKEMQDFYNANKDQ-----LFVKQEAHARHILV 164
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +S Q + + + S N + + D
Sbjct: 165 KTEDEAKRIISEIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFS 224
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----S 605
F+ P++ Y + + + ++ + M+ + L
Sbjct: 225 KAAFALTPGDYTKTPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQ 284
Query: 606 VIAYLKSQYSVTVHD 620
I L+ + ++
Sbjct: 285 RIEELRKHAKIVINK 299
>gi|229167152|ref|ZP_04294895.1| Foldase protein prsA 1 [Bacillus cereus AH621]
gi|228616386|gb|EEK73468.1| Foldase protein prsA 1 [Bacillus cereus AH621]
Length = 283
Score = 44.8 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 9/148 (6%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA-SLLTTNQINR 536
++V + K + K + A ++ + G++F + K ++
Sbjct: 123 TDKDVKDNHKPEMKVSHILVKDEKTAKEVKEKI-NNGEDFTALAKQYSEDTVSKEQGGEI 181
Query: 537 MDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V PI+ Y + KVT+ K + KD L
Sbjct: 182 AGFAPGQTVKEFEEAAYKLDAGQV-SEPIKTSYGYHIIKVTDKKELKPFDEVKDTIRKDL 240
Query: 595 TQMMNKDL----LDSVIAYLKSQYSVTV 618
Q +D VI L + + V
Sbjct: 241 EQQRLQDATGKWKQQVINDLLKEADIKV 268
>gi|251794076|ref|YP_003008807.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
JDR-2]
gi|247541702|gb|ACS98720.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
JDR-2]
Length = 368
Score = 44.5 bits (102), Expect = 0.049, Method: Composition-based stats.
Identities = 27/336 (8%), Positives = 82/336 (24%), Gaps = 17/336 (5%)
Query: 1 MLEIIRKAS--RTWVAKIFLVVLFVPFLIWG---------LSDALFSVSGSSTVVSVGRQ 49
ML RK++ R+ + I V++ G + V +
Sbjct: 1 MLHTKRKSTWRRSALLVIAAVLVMTIMAACGGKKENEGGSTGLTFAGAGKGTVVATYKDG 60
Query: 50 KVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE 109
V + F + ++ V+ +++L VS L + + L+
Sbjct: 61 TVTEAEFNK-YLDIFNIMQPGYEQVIAI-----PQFKEQLLQQFVSYKILAKQATEATLK 114
Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
++ + + +++ + + + V +
Sbjct: 115 KADDETNDQMKSFEDTLKTNADVKKTLDDKKVSTADVRTYLNLMLVVVEHMNSKVTDDEM 174
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
N+ + + + + + +
Sbjct: 175 KAEYEKNIGNYNPVTVRHILVATTDPADSTKTLRTKEEALARAKEAKAKLDAGGDWTALA 234
Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
K S + + + ++ +I + + E
Sbjct: 235 KEYSDDTGSKDSGGEYKDAKASDWVEGFKNAALTQPVGKIGDPVETEYGYHVILVEKRDQ 294
Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
+ K + +E ++ + +F + +P +
Sbjct: 295 VTYDKITDEQKQEVQSVVAYNHMNTFMTDEMPKQDV 330
>gi|329925505|ref|ZP_08280379.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5]
gi|328939788|gb|EGG36128.1| PPIC-type PPIASE domain protein [Paenibacillus sp. HGF5]
Length = 311
Score = 44.5 bits (102), Expect = 0.049, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 28/138 (20%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-------SGSSTVVSVGRQKVPFSSFIN 58
R+ W I L + W L FS +GS V S+ + + +
Sbjct: 3 RQEKGLWATVIVLTACVLGMGGWMLFSGGFSQEASPPWKAGSQPVASIQDRAITEDEW-- 60
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ + ++ G +++L +++ + + G++ V E
Sbjct: 61 -----VDELKKRYG--------------REMLMTMLNRHAVALEAKAKGIDVTAAEVETE 101
Query: 119 IARSPLFHGKDNKFSHDV 136
I +G +F ++
Sbjct: 102 IEVMSRSYGSKERFLSEM 119
>gi|228906899|ref|ZP_04070766.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200]
gi|228852647|gb|EEM97434.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 200]
Length = 285
Score = 44.5 bits (102), Expect = 0.050, Method: Composition-based stats.
Identities = 28/243 (11%), Positives = 87/243 (35%), Gaps = 20/243 (8%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + +++ +P + + K K+ +K+ L
Sbjct: 42 DFEKQLKDRYGKDMLYEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENNRLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
++ L + I E ++V K + K ++A +
Sbjct: 102 DEEDFKNQIKFKLAMNEAIKKSITE---------KDVKDHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ ++ + + + + + V + P
Sbjct: 153 IKNKLD-AGASFEELAKQESQDLLSKDKGGDLGYFNSGTMAPEFETAAYKLNVGQISN-P 210
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD------LLDSVIAYLKSQYSVTV 618
+++ Y V K+T+ K ++ D+ + + + + ++ ++ + ++ +
Sbjct: 211 VKSSNGYHVIKLTDKK--DLKPYDEIKNSIRKNLEEERTADPVFSKKLLQEELKKANIKI 268
Query: 619 HDN 621
+D+
Sbjct: 269 NDS 271
>gi|182419506|ref|ZP_02950757.1| foldase protein PrsA [Clostridium butyricum 5521]
gi|237666290|ref|ZP_04526277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182376636|gb|EDT74209.1| foldase protein PrsA [Clostridium butyricum 5521]
gi|237658380|gb|EEP55933.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 247
Score = 44.5 bits (102), Expect = 0.050, Method: Composition-based stats.
Identities = 27/245 (11%), Positives = 68/245 (27%), Gaps = 15/245 (6%)
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
+ R E + +E + I L + G++++ +
Sbjct: 12 HEITENDLNALIARYPEQQRAAFNSEEAKKNLLEQLISFELFNKFGQELELDKTQEYKDA 71
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+ + ++K + V + + + + V
Sbjct: 72 VASITKEVLTSMAMNK---------ALADVTVTDEDAKKYYDENKDAFSVPPTVSARHIL 122
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
+ +AN++ E G +F D + N + + F
Sbjct: 123 VKTEEEANKVKEEI-NGGLSFADAAMKYSSCPSKEQGGNLGEFSKGMMVPEFEKASFEAE 181
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM----NKDLLDSVIAYLKS 612
+ V P++ Y + V + G V+ ++ + + D ++ L+
Sbjct: 182 IG-VLTEPVKTQFGYHLIIVDSKNEGAVKSFEEVKDSVVNELLKRNQHKKYDDLMNQLQE 240
Query: 613 QYSVT 617
+Y V
Sbjct: 241 KYGVE 245
>gi|255534611|ref|YP_003094982.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae
bacterium 3519-10]
gi|255340807|gb|ACU06920.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Flavobacteriaceae
bacterium 3519-10]
Length = 467
Score = 44.5 bits (102), Expect = 0.051, Method: Composition-based stats.
Identities = 46/510 (9%), Positives = 126/510 (24%), Gaps = 78/510 (15%)
Query: 3 EIIRKASRTWVAKIFLVVLFVPFL--IWGL---SDALFSVSGSSTVVSVGRQKVPFSSFI 57
+ + ++K L F+ +G+ + V VG + + S
Sbjct: 4 DNFADCKKQIMSKHIKFALLTSFILTFFGVQTHAQLKTGDLVDGIAVVVGNEIILESDIE 63
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ +Q+ G V + ++++++ L + L +
Sbjct: 64 DQ-----ANYAQQQGAAVAD--------KCEFVESIINNKLLIYEAKRDTLIENRSESIK 110
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
E A +S
Sbjct: 111 ETANQKYAQILGQFPDEKTMLSTYK--------------------------------FRT 138
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + Y + + AD + +T +F Y+ +
Sbjct: 139 SYEMKNAIEKIDTDNYYGQMKFGRITEKADVTPNEVTDFFNTYQFQLPEVK--------- 189
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
Y ++++ K + +
Sbjct: 190 ----------------DEVSLSQITMYPKLTDAHKDEIIARLNKIKADIAAGESFESQAR 233
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
+E+ G + + + ++ + ++ ++G+ + + FGY + +
Sbjct: 234 IYSEDPGSAATGGLYKNVARGKMVKP--FEAAALNLQEGELSEPVESEFGYHLIQLVKKS 291
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ + K N I A +++ + E +K + +
Sbjct: 292 GKMYDARHILLKAEPNADEIASARKELDSIRTLINEGKLTFKEAAFRFSDDKQTKFNAGI 351
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
+ + +++ P + + D TV +++ + I A
Sbjct: 352 LTSQDGSDRLEKLNLPPVVSYQIAGLNKGDITDVFQDTV-QDRKVVTLIKVDDVIAAHRL 410
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
+ +K+ K E V + +
Sbjct: 411 DITTDYDRIKQMALNKKKNEMVEKWVKEKL 440
>gi|329957339|ref|ZP_08297859.1| hypothetical protein HMPREF9445_02737 [Bacteroides clarus YIT
12056]
gi|328523052|gb|EGF50155.1| hypothetical protein HMPREF9445_02737 [Bacteroides clarus YIT
12056]
Length = 510
Score = 44.5 bits (102), Expect = 0.051, Method: Composition-based stats.
Identities = 34/424 (8%), Positives = 100/424 (23%), Gaps = 32/424 (7%)
Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269
+ + + +Y + + + +++ + LQ +
Sbjct: 109 DKMKSGHRAGQVRVSHIFKYLPQNVSGAALRDAVARMDSIYEYLQRNPDSEAFDSCVERF 168
Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI 329
+Q + + F+ + G ++++ + + +P
Sbjct: 169 SDEKQAFRVSWLQMPVEFEDVVFGLSAGEMSQPFFTPQGIHIVKVLERLEMPSFESVKEE 228
Query: 330 FSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
+ G K + ++ N R + +
Sbjct: 229 LMARRAHRHGV----DSGAEAQVEKLKKEYRYTPDKTGVDELINTGRTNRTLFTLAGKNY 284
Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
+F + R+ I ++D+ ++ K R+
Sbjct: 285 TGHDFARFAAAYPAGVHRQLDAFIMKTVLDYENTRLEQKHPDLRCLVRDYGNRLLADKIT 344
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
+ A D + + ++ K V + ++ +A + +
Sbjct: 345 EQEIRKRAATDEAGLQAYFEKHRSDYQWKEPRYKGIVLHGVS-----KRIAKQARKFLKS 399
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC------- 562
+ R+ Q P +
Sbjct: 400 LPEA----------------EWKDAIRLTFNAGAQPQIFAEQGLFAPGDNAYVDDLVFKG 443
Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+ +S+ V KV + + L L + A L++ V ++ +
Sbjct: 444 KDAASMVSFPFTAVLGEKVKGPDDYREVRDRLVADYQNYLDNQWTARLRASAKVEINQEV 503
Query: 623 IQRY 626
++
Sbjct: 504 LKTV 507
>gi|156741511|ref|YP_001431640.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus
castenholzii DSM 13941]
gi|156232839|gb|ABU57622.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseiflexus
castenholzii DSM 13941]
Length = 517
Score = 44.5 bits (102), Expect = 0.051, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 35/137 (25%), Gaps = 20/137 (14%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
R+ R V +VV I V VG + + + E
Sbjct: 44 RRRQRAIVIGTVVVVALALIAITAGLVYERLWLPGRPVAQVGDVTLTRGDYEAERRGEAA 103
Query: 66 M--------------ISQKIGFVVNSERARSVGLDKK-----ILDNLVSGATLDQFIED- 105
+Q+ + A++V + ++ + + Q +
Sbjct: 104 RSIAQSLYLATFGSQFAQQFLDQIPQIDAQAVAARDEPVDDALVQQWIDLQLIRQGAQTG 163
Query: 106 IGLEADHGRVWGEIARS 122
++ G V E
Sbjct: 164 FAIQVTDGEVAQEFINL 180
>gi|110634111|ref|YP_674319.1| putative survival protein surA precursor (peptidyl-prolyl cis-trans
isomerase SurA) [Mesorhizobium sp. BNC1]
gi|110285095|gb|ABG63154.1| putative survival protein surA precursor (peptidyl-prolyl cis-trans
isomerase SurA) [Chelativorans sp. BNC1]
Length = 312
Score = 44.5 bits (102), Expect = 0.051, Method: Composition-based stats.
Identities = 22/289 (7%), Positives = 67/289 (23%), Gaps = 27/289 (9%)
Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE 104
V + + + L + Q+ G +++ + ++ Q +
Sbjct: 39 VVNDRPITSFDIER--RAALLRLMQRKG-----------NVNELAAEEMIDQTLRQQEMA 85
Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
G+ V N + L + G+ ++ + + + V
Sbjct: 86 RSGVNITQAMVDESYRN----FAGSNNMTVAQLDQILGQAGVGKEHFKEFIRTQIGWGRV 141
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ + K + + V + + K +
Sbjct: 142 MQSRSRSGTILSEQDVVQKMLQQGGQKPTATEYMLQQVIFVVPAAQRGQLLAKRKREAQA 201
Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
+ + + + + + +
Sbjct: 202 MRDRFNGCANTVQFAKGL----------IDVTVRDMGRVLAPELPPEWKDQISNTRPGNA 251
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
+ ++G +FI + + S ++ F + D S D+
Sbjct: 252 TPIRETERGVEFIGICSAREVSDDHVARMVFQSQQAGDGSFEDAAKEYM 300
>gi|227823202|ref|YP_002827174.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Sinorhizobium
fredii NGR234]
gi|227342203|gb|ACP26421.1| putative foldase/peptidyl-prolyl cis-trans isomerase [Sinorhizobium
fredii NGR234]
Length = 284
Score = 44.5 bits (102), Expect = 0.052, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 4/134 (2%)
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
+ +E++A Y+K + E ++ + EA + L GK F++LA+ + +
Sbjct: 117 TKEEVKARYDKEIAAIPAQEEVKARHILVKTEDEAKAIIKELDAGKSFVELAKAKSTDPN 176
Query: 309 ---DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
LG F+K + + F+L K + FG+ + V + +P +
Sbjct: 177 KDDGGDLGYFTKGRMV-PEFETAAFALEKGTYTKTPVKSQFGFHVILVEDKRPQAPPPLE 235
Query: 366 EVKKDIANQMRITK 379
+V+ + + K
Sbjct: 236 QVEPQVRQLIMRDK 249
Score = 41.4 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 21/278 (7%), Positives = 62/278 (22%), Gaps = 18/278 (6%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V VG Q++ S + + + L
Sbjct: 19 GVVRAEGTDPVVAKVGDQEIRQSELDLAITSLDPQLQRMP----------EEQKRAAALS 68
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
++ L + E GL+ + +A + F V + E
Sbjct: 69 AVIDVKLLVKDAEKEGLQ-NDAVFKQRVAFLTERELHNAFFKKHVVDAVTKEEV------ 121
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
Y K ++ + + ++ L
Sbjct: 122 KARYDKEIAAIPAQEEVKARHILVKTEDEAKAIIKELDAGKSFVELAKAKSTDPNKDDGG 181
Query: 212 VLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRT 271
L + + + + + + ++ + + E +
Sbjct: 182 DLGYFTKGRMVPEFETAAFALEKGTYTKTPVKSQFGFHVILVEDKRPQAPPPLEQVEPQV 241
Query: 272 VEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
+ ++ + + G + A ++ +
Sbjct: 242 RQLIMRDKYLALLDTAKK-ATGVEISDPALKKAYDEAG 278
>gi|189463690|ref|ZP_03012475.1| hypothetical protein BACINT_00021 [Bacteroides intestinalis DSM
17393]
gi|189438640|gb|EDV07625.1| hypothetical protein BACINT_00021 [Bacteroides intestinalis DSM
17393]
Length = 528
Score = 44.5 bits (102), Expect = 0.052, Method: Composition-based stats.
Identities = 49/445 (11%), Positives = 116/445 (26%), Gaps = 42/445 (9%)
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ E+ + R ++ + + +A + + S
Sbjct: 94 DTTRAFREELEGYRRQLAKTYLTDETVSELAARQIYDKMKANQRAGQVRVSHIFKSLPQT 153
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
L+ + D + +L+ G+ S +P + +
Sbjct: 154 ATSHLLRTTETRMDSLYTALQNGQADFDACVRNFSDEKKSF--WVSWLQMP--AEFEDTV 209
Query: 331 SLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
K G+ + G I V K + F++VK +I + +K E
Sbjct: 210 FKMKPGEISRPFFTPQGIHIVKVLERKD--ILPFEDVKDEIIRRQTRRHGMDKGTESLVE 267
Query: 391 LEEFLALGTSMDEISRREKIVSID-LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
+ T L G++ G+ A + K
Sbjct: 268 KLKKEYQYTPDKVGMDELLAKGQTEKKLFTLGGREYTGQMFANFAIAHPQGIQRQLKGFI 327
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT-DVKKDWKTVKTAEEVSSKANQLVL 508
+ ++++ P ++E + + + E V S +
Sbjct: 328 MKSVLDYEYS-------RLEQKYPEFRMLMQEYRDGMLLFEISNREIWERVPSDEVGMAA 380
Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-------YDGISQVFSGPVEMVK 561
+ K ++ + ++ + K D I F+ + V+
Sbjct: 381 YFDKHRSDYHWKNPHYKGIVIHSATKRIGKQVRKLLKSLPEEEWQDAIRLTFNAKKQQVQ 440
Query: 562 CFPIE---NGLSYV---VFKVTNSKVGP--------------VQEKDKFISYLTQMMNKD 601
YV +FK ++ P + + L
Sbjct: 441 AEQGLFALGDNIYVDDEIFKKEKAEPIPSFPFTTFLGEKIKGPESYQEVRGLLVGDYQNY 500
Query: 602 LLDSVIAYLKSQYSVTVHDNLIQRY 626
L + +A L++ V ++ +++
Sbjct: 501 LEERWVARLRAASKVEINQEVLKTV 525
>gi|115351951|ref|YP_773790.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria AMMD]
gi|115281939|gb|ABI87456.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria AMMD]
Length = 260
Score = 44.5 bits (102), Expect = 0.052, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + + + + D+ + + Q + + L + L+ Q +
Sbjct: 202 QMTDTPVKTQFGWHIIRADDIRDVAPPPFDQVKAQIAQQIVQQKLQAFEEGLRQQAKIQ 260
Score = 42.2 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 59/156 (37%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + ++ E++A Y++ + + ++ ++++A + +K G KF
Sbjct: 101 MIESFLKKNQPTDAEVKARYDELVKGAGGNREYHLHHILVESEQQAKDLIAKIKGGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRAD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+I+ F +VK IA Q+ K + ++
Sbjct: 221 DIRDVAPPPFDQVKAQIAQQIVQQKLQAFEEGLRQQ 256
Score = 37.9 bits (85), Expect = 4.8, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + + S L + + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADAMVAQLVQQ-----------GQTDSPQLQQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIREGI 79
>gi|308063037|gb|ADO04924.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori Sat464]
Length = 299
Score = 44.5 bits (102), Expect = 0.052, Method: Composition-based stats.
Identities = 20/255 (7%), Positives = 60/255 (23%), Gaps = 14/255 (5%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
M + + K E+ + ++ + + L ++ +
Sbjct: 55 KSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDQTPEFKAMMEAVK 114
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
A+ F + + + K + + +E
Sbjct: 115 KQALVE-----FWAKKQAEEVKKIQIPEKEMQDFYNANKDQ-----LFVKQEAHARHILV 164
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +S Q + + + S N + + D
Sbjct: 165 KTEDEAKRIISEIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFS 224
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----S 605
F+ P++ Y + + + ++ + M+ + L
Sbjct: 225 KAAFALTPGDYTKTPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQ 284
Query: 606 VIAYLKSQYSVTVHD 620
I L+ + ++
Sbjct: 285 RIEELRKHAKIVINK 299
>gi|299143243|ref|ZP_07036323.1| foldase protein PrsA [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298517728|gb|EFI41467.1| foldase protein PrsA [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 331
Score = 44.5 bits (102), Expect = 0.052, Method: Composition-based stats.
Identities = 17/155 (10%), Positives = 46/155 (29%), Gaps = 13/155 (8%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFV--------VNSERARSVGLDKKILDNLVS 95
+V + ++ + + G N ++ + + L N++
Sbjct: 2 ATVNGTDLTEKDYVMQYAAQRNQYVLTAGSEDVLSQPSADNPKKTVDQAIKENTLKNMIQ 61
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
+ Q + D +V EI G +++ +L G + Y +
Sbjct: 62 MELVKQDAAKSNIAVDQSKVDEEIKAIITQMGG-----EEIYKQKLEALGSTPEFYKSYL 116
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
T++ + P++ + + +N
Sbjct: 117 TELQLMKSYYETKIKEFEPTDEEIQKYYDKNKDNF 151
Score = 41.4 bits (94), Expect = 0.46, Method: Composition-based stats.
Identities = 23/191 (12%), Positives = 58/191 (30%), Gaps = 6/191 (3%)
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
++ +Q L + + T SY +IKE P ++++ K
Sbjct: 91 QMGGEEIYKQKLEALGSTPEFYKSYLTELQLMKSYYETKIKEFEPTD-EEIQKYYDKNKD 149
Query: 489 DWKTVKTAEEVSSKANQL--VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY 546
++ K + + + + + +G +F ++ K + +
Sbjct: 150 NFFKAKASHILVETVEEANKLKKELNKGADFAEMAKENSKDPGSAANGGSLGEFKNGDMV 209
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ V P+++ Y + KV + E L Q + +
Sbjct: 210 AEFNDVVKILKVGEISDPVKSKFGYHIVKVDEKSARTLDE---VKEELKQQLTQAKFTDY 266
Query: 607 IAYLKSQYSVT 617
I ++ ++
Sbjct: 267 IEKMQKDAKIS 277
>gi|257092460|ref|YP_003166101.1| EpsD family peptidyl-prolyl cis-trans isomerase [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257044984|gb|ACV34172.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 320
Score = 44.5 bits (102), Expect = 0.052, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 13/104 (12%)
Query: 21 LFVPFLIWGLSD-ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ + + S + S + V ++ + + V +++
Sbjct: 16 IVMVLALTACSGKDDKTKSATQVAAKVNGGEISVHQINDVLARA---------GNVPADQ 66
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
AR +L+ L+ L Q + L+ V I +
Sbjct: 67 ARQASGK--VLEGLIGQELLLQEAMEKKLDRT-APVVQAIEAAK 107
Score = 39.1 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 37/118 (31%), Gaps = 9/118 (7%)
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKC 562
A Q ++ +K + K + + + + V ++
Sbjct: 164 ALQERVDRAKSLNDVAAWLKEQNIPFNAGSGAK----GAEQLPLNLLPIVAEMRDGQIRL 219
Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDK---FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ G V ++ S+ PV E+ +L +L ++ + L++ +
Sbjct: 220 VTMPGGA--AVLQLIASRDQPVDEQTARPAIEQFLANKKKSELAETEMKRLRAAAKIE 275
>gi|145640428|ref|ZP_01796012.1| stationary-phase survival protein SurA [Haemophilus influenzae
R3021]
gi|145275014|gb|EDK14876.1| stationary-phase survival protein SurA [Haemophilus influenzae
22.4-21]
Length = 162
Score = 44.5 bits (102), Expect = 0.052, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 36 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSK 95
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 96 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 154
Query: 614 YSVT 617
++
Sbjct: 155 ANIQ 158
>gi|297545628|ref|YP_003677930.1| hypothetical protein Tmath_2254 [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296843403|gb|ADH61919.1| conserved hypothetical protein [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 238
Score = 44.5 bits (102), Expect = 0.053, Method: Composition-based stats.
Identities = 19/219 (8%), Positives = 52/219 (23%), Gaps = 35/219 (15%)
Query: 11 TWVAKIFLVVLFVPF----------------------LIWGLSDALFSVSGSSTVVSVGR 48
+ L ++ F + + + + V
Sbjct: 13 SIFLIFILAIVAFSFSAANPQEKANELQFNNVVEKVLAFFKSNKDKLQIDKGDMIAEVNG 72
Query: 49 QKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
+ + F + L ++ +D IL L+ + +
Sbjct: 73 IPIYKNEFELRKELTLA------------PGVQTDNIDDYILQKLIKEKVQEYLASKYNI 120
Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
+ I + + + + +A G+ E EY + Y K ++ ++
Sbjct: 121 RVSERGINEYIEKEKKEFNEYPE-AKKKLDELIAASGMTEDEYWNTYEKYNAKRILLFSK 179
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ + + E + I +
Sbjct: 180 LNNYIIEEGIKSGKLKKAEEMTNDVQNEYKRYVDSIIDE 218
>gi|170718609|ref|YP_001783810.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
2336]
gi|168826738|gb|ACA32109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Haemophilus somnus
2336]
Length = 321
Score = 44.5 bits (102), Expect = 0.053, Method: Composition-based stats.
Identities = 19/193 (9%), Positives = 59/193 (30%), Gaps = 4/193 (2%)
Query: 428 KEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVK 487
+++A ++ + G ++++ L + + + V +
Sbjct: 127 QQIAYQILISEVRNQAIGSSVNVTREEIQDLGLKLFKQAKKQGKEKKVTAPEYNVR-HIL 185
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
+ + +K Q+ + F D L+ +
Sbjct: 186 LKLNPLLNDAQAKAKLTQIRADILANKITFADAALKYSKDYLSGADGGSLGFMFPEAYVP 245
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS-- 605
++V + V P + + + +VT+ + + + Q++N+ L ++
Sbjct: 246 EFAKVIRTSKKGVISTPFKTEFGWHILEVTDIRNADITREAYMQEAYQQIVNQQLQEASG 305
Query: 606 -VIAYLKSQYSVT 617
I L+ + +
Sbjct: 306 DWIKALRKRAHIQ 318
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 20/164 (12%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
R K+F + +I LS + + + V +V + S
Sbjct: 2 KKRNKKMKVFNFKAVLFSIIGLLSITITAQAAERVVATVDGNPILESQV----------- 50
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+ +G N+E + L++++ + + I+++G++ V I
Sbjct: 51 KKVLGKRANNEEN-----RQIALNSIIDDLLVQKAIQELGIKVAPAHVDSVIENIAA--- 102
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
N + F+ L +GIN + Y + ++V +G
Sbjct: 103 -QNGLTFGQFLDVLDYQGINYQAYRQQIAYQILISEVRNQAIGS 145
>gi|300871204|ref|YP_003786077.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brachyspira
pilosicoli 95/1000]
gi|300688905|gb|ADK31576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Brachyspira
pilosicoli 95/1000]
Length = 295
Score = 44.5 bits (102), Expect = 0.054, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 14/156 (8%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+S V VG + + F++ K L + ++ IG +N + + +LV +
Sbjct: 3 NSIVGVVGSIPITYEDFVSR-KSFLSLQARSIGKKINDDM---------VYKDLVEERIM 52
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+++ + V + + D F +L EGI+ EY + K +
Sbjct: 53 YLKLKEYNYVIEENDVSRRLENIAN----QYNLTLDQFAKQLKAEGISYDEYRNSIKKQI 108
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
+ ++ G+ V ++ D+ + + +
Sbjct: 109 AMENLSGLVVNNTEITDAEADEYYNNSKDKTAFEVD 144
>gi|206977675|ref|ZP_03238567.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus H3081.97]
gi|206744103|gb|EDZ55518.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus H3081.97]
Length = 285
Score = 44.5 bits (102), Expect = 0.054, Method: Composition-based stats.
Identities = 32/264 (12%), Positives = 80/264 (30%), Gaps = 14/264 (5%)
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
K D T ++ + K+L++ + I++ + D +
Sbjct: 21 CGQKNDSDPVATATDSTITKSDFEKQLKDRYGKDMLYEMIAQDVITKKYKVSDDDVDKEL 80
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
K K +K L + L + I E ++V
Sbjct: 81 QKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAMNEAIKKSITE---------KDVKD 131
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF- 543
K + K ++A ++ + G +F ++ K LL+ + + N
Sbjct: 132 HYKPEIKASHILVSDENEAKEIKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGR 190
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLTQMMNKD- 601
+ + + V + +++ ++ P E KD L + D
Sbjct: 191 MAPEFETAAYKLKVGQISNPVTSPNGYHIIKLTDKKELKPYDEVKDSIRKNLEEERISDP 250
Query: 602 -LLDSVIAYLKSQYSVTVHDNLIQ 624
++ + ++ ++D+ ++
Sbjct: 251 IFGKKLLQNELKKANIKINDSELK 274
>gi|289642494|ref|ZP_06474638.1| hypothetical protein FsymDgDRAFT_1896 [Frankia symbiont of Datisca
glomerata]
gi|289507668|gb|EFD28623.1| hypothetical protein FsymDgDRAFT_1896 [Frankia symbiont of Datisca
glomerata]
Length = 295
Score = 44.5 bits (102), Expect = 0.054, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 14/113 (12%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
R A+R +A + LVVL V + + + +G + S+ + + L
Sbjct: 34 RSAARRILAGVALVVLSVS----------ACTTHAGSAAQIGDDTIKTSTLRDVVDRGLA 83
Query: 66 ----MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ + L ++ L LV L++ +G+
Sbjct: 84 VSRSAAAANPSAAQSIAPIERTDLQRRALTTLVQLDLLEREARSLGITVADQD 136
>gi|291483469|dbj|BAI84544.1| molecular chaperone [Bacillus subtilis subsp. natto BEST195]
Length = 294
Score = 44.5 bits (102), Expect = 0.055, Method: Composition-based stats.
Identities = 22/177 (12%), Positives = 49/177 (27%), Gaps = 33/177 (18%)
Query: 483 LTDVKKDWKTVKTAE---------------------------EVSSKANQLVLEYSKEGK 515
VK + T K A+ K + + + K+G+
Sbjct: 102 KEQVKYELLTQKAAKDNIKVTDDEIKEYWEGLKGQIRASHILVADKKTAEEIEKKLKKGE 161
Query: 516 NFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
F + K + + + +N+ F V P++ Y
Sbjct: 162 KFDALAKEYSTDTGSATNGGELGWISKDNEQLDSTFRKAAFKLKTNEV-SDPVKTQFGYH 220
Query: 573 VFKVTNSKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
+ K T + K + S + + D + + + + + V D ++
Sbjct: 221 IIKKTEERGKYDDMKKELKSEVLEQKLNDSNAVQEAVQKVMKKADIEVKDKDLKATF 277
>gi|237747325|ref|ZP_04577805.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
formigenes HOxBLS]
gi|229378676|gb|EEO28767.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oxalobacter
formigenes HOxBLS]
Length = 259
Score = 44.5 bits (102), Expect = 0.055, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 41/133 (30%), Gaps = 6/133 (4%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT---NQINRMDNENKFF 544
+ + + + A ++ + +K G NF I K + ++ N
Sbjct: 130 QQYHVKHILVKNEADAQNIINQLNK-GANFEKIAKEKSIDQGSAARGGDLSWASPSNYIK 188
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD 604
+ + + + P++ Y + K+ + + + ++ + + +
Sbjct: 189 PFS--DAMIALKKGQITKTPVKTQFGYHIIKLVDVRKATLPSLNQVKPKIKTSLEERKWQ 246
Query: 605 SVIAYLKSQYSVT 617
L Q +
Sbjct: 247 EYEMNLMKQAKIE 259
>gi|139439422|ref|ZP_01772863.1| Hypothetical protein COLAER_01883 [Collinsella aerofaciens ATCC
25986]
gi|133775201|gb|EBA39021.1| Hypothetical protein COLAER_01883 [Collinsella aerofaciens ATCC
25986]
Length = 407
Score = 44.5 bits (102), Expect = 0.055, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 31/228 (13%)
Query: 6 RKASRTWVAKIFLVVLFV--------PFLIWGLSDALFSVSGS-----STVVSVGRQKVP 52
RK + KI LVV+ V GL S S ++ +
Sbjct: 29 RKTYVSKTVKIVLVVIGVLAMLLSVSAMACSGLMSQTESASSGYKLTGGVAATINGTNLT 88
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSV--------GLDKKILDNLVSGATLDQFIE 104
++ +++ + G+ + + A+ + K+++D+ L Q +
Sbjct: 89 ----EDTVTKQIMSMRTSYGYTKDKDWAQYLVDNDLTPKKYRKQLIDSYAQQILLQQAQK 144
Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+ G+ V + G F L G E Y D + L++ +
Sbjct: 145 ENGVTVSDEEVEKAWKDACKSAGGAKAF-----KKTLKTYGYTEDTYKDSLKESLAQQKL 199
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+P + + + D +N + +D S+
Sbjct: 200 KDAVAPTSKPKDSEIVDYIN-ENLSNYNDARRSSNILIKVDSDASDED 246
Score = 40.6 bits (92), Expect = 0.71, Method: Composition-based stats.
Identities = 29/289 (10%), Positives = 72/289 (24%), Gaps = 13/289 (4%)
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
I + V K Q+ + A + + + ++ +
Sbjct: 96 IMSMRTSYGYTKDKDWAQYLVDNDLTPKKYRKQLIDSYAQQILLQQAQKENGVTVSDEEV 155
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
++ + + K E ++ L + KD
Sbjct: 156 EKAWKDACKSAGGAKAFKKTLKTYGYTEDTYKDSLKESLAQQKLKDAVAPTSKPKDSEIV 215
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
Y+ + AR + + + +KA + + + + +F D
Sbjct: 216 DYINENLSNYNDARRSSNILIK---VDSDASDEDKAAAKAKAQECLDKINSGELSFEDAV 272
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK------ 575
+ + ++ + + D G + +E+ Y + K
Sbjct: 273 EQYSDDTGSKDKKGDVGWDKLTTFVDSYQAALEGLNKGDVSDVVESTYGYHIIKCTDYFH 332
Query: 576 ----VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
V + K P K + + + K +TV+
Sbjct: 333 VDNQVDDIKQVPKDIKKYVSNVVKTQAASTAYSEWLEQYKKDADITVNP 381
>gi|15611231|ref|NP_222882.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
J99]
gi|10720360|sp|Q9ZMQ7|Y175_HELPJ RecName: Full=Uncharacterized protein jhp_0161; Flags: Precursor
gi|4154677|gb|AAD05744.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 299
Score = 44.5 bits (102), Expect = 0.055, Method: Composition-based stats.
Identities = 20/255 (7%), Positives = 60/255 (23%), Gaps = 14/255 (5%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
M + + K E+ + ++ + + L ++ +
Sbjct: 55 KSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTPEFKAMMEAVK 114
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
A+ F + + + K + + +E
Sbjct: 115 KQALVE-----FWAKKQAEEVKKIQIPEKEMQDFYNANKDQ-----LFVKQEAHARHILV 164
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +S Q + + + S N + + D
Sbjct: 165 KTEDEAKRIISEIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFS 224
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----S 605
F+ P++ Y + + + ++ + M+ + L
Sbjct: 225 KAAFALTPGDYTKTPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQ 284
Query: 606 VIAYLKSQYSVTVHD 620
I L+ + ++
Sbjct: 285 RIEELRKHAKIVINK 299
>gi|187776514|ref|ZP_02992987.1| hypothetical protein CLOSPO_00005 [Clostridium sporogenes ATCC
15579]
gi|187775173|gb|EDU38975.1| hypothetical protein CLOSPO_00005 [Clostridium sporogenes ATCC
15579]
Length = 247
Score = 44.5 bits (102), Expect = 0.056, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 35/113 (30%), Gaps = 5/113 (4%)
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
K G +F + + + + VF V+ V ++
Sbjct: 135 KIKNGLDFSEAAEKYSKCPSKAQGGSLGTFTKGQMVPEFEKAVFEAEVDKVTEA-VKTQF 193
Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLT----QMMNKDLLDSVIAYLKSQYSVTV 618
Y + V N + ++ D+ + + Q + L+ +Y+V +
Sbjct: 194 GYHLIIVDNIRESMIKPFDEVKAMINNKLLQEKQNQQYNEFTQNLRDKYTVEI 246
>gi|329847914|ref|ZP_08262942.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19]
gi|328842977|gb|EGF92546.1| PPIC-type PPIASE domain protein [Asticcacaulis biprosthecum C19]
Length = 348
Score = 44.5 bits (102), Expect = 0.056, Method: Composition-based stats.
Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 5/234 (2%)
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
D + + + + + L V K + R+
Sbjct: 50 WASDVRAEAVAQGAIGPGEPLDPTSDMFARTLEEVIDQRLLAKAARAKGLDKSVAAQRRL 109
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKA 503
+D + D V + + + KL + +++ +K+ EE
Sbjct: 110 QAAEDRILGDMLVENTIDRDIDEKSIKEHYDEQVKLSKQSEEIRTRVILLKSKEEA---- 165
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF 563
V++ + G F + T M V S
Sbjct: 166 -DNVMKAVQGGSLFEAMAMERSIDQTTRFSGGDMGYFTTDIMPQAYKGVLSTAKIGDTVG 224
Query: 564 PIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P++ + + +V + + + ++ + + + + + ++ L+ V
Sbjct: 225 PVQAEGGWAILRVEDRRPEQLPSLEEERPIIMRYLIYNQVAGLLESLRKGAKVE 278
>gi|94265725|ref|ZP_01289462.1| hypothetical protein MldDRAFT_4726 [delta proteobacterium MLMS-1]
gi|93453738|gb|EAT04114.1| hypothetical protein MldDRAFT_4726 [delta proteobacterium MLMS-1]
Length = 229
Score = 44.5 bits (102), Expect = 0.056, Method: Composition-based stats.
Identities = 21/209 (10%), Positives = 46/209 (22%), Gaps = 18/209 (8%)
Query: 19 VVLFVPF-LIWG------LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
++L + F G + S +V VG + +
Sbjct: 7 ILLVLFFTAACGQQEQEKIGAEAGPASDEGYIVQVGGNYITPADVEQELAGMPENRRTNY 66
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
G ++++D ++ Q + GL+ +
Sbjct: 67 ---------EMPGGKQRLIDEMIKREMFRQEAQRAGLDQSEEY--RQRVEYLSRLALVEM 115
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
F D + +Y + + + V G + +
Sbjct: 116 FLEDHIQGSVTVSDQELSDYYEKHKEDEFTNPVSGETQPFTSVRDSIRRYLVMEKQREVF 175
Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
DY+ P E+
Sbjct: 176 NDYMAELMERYVVEVSPEYRPSPGMEEEM 204
>gi|184155805|ref|YP_001844145.1| peptidylprolyl isomerase [Lactobacillus fermentum IFO 3956]
gi|183227149|dbj|BAG27665.1| peptidylprolyl isomerase [Lactobacillus fermentum IFO 3956]
Length = 330
Score = 44.5 bits (102), Expect = 0.057, Method: Composition-based stats.
Identities = 27/255 (10%), Positives = 71/255 (27%), Gaps = 11/255 (4%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
E V + +V + A V
Sbjct: 36 TESEYYSSMKQTSNGKQVLQQMILDKVLEKQYGSKVSTSEVNSEYNAYKKEYGSSFSTVL 95
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
++ +K + + ++ L++ + +T + A
Sbjct: 96 SEEGLTAKSFKQQIRSNLLLKAAVRNYSTFSSSALKKQWKKYEPKVQTAEILVGSKETAQ 155
Query: 505 QLVLEYSK----EGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPV 557
++ + + K F+ + K+ T + ++ DN + F+
Sbjct: 156 SIIDTLNNTSGSKLKEFKKLAKSKSTDTTTKSNGGVVSAFDNTDTSLPSAYRKAAFALKT 215
Query: 558 EMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYL-TQMMNKDLL-DSVIAYLKSQ 613
P++ Y V + +K + TQ +N +V++ + +
Sbjct: 216 GEYTTEPVKTDNGYYVIYMIKHPAKGKYSSHISDLKDQIVTQNLNNSTFLHNVVSKVLKK 275
Query: 614 YSVTVHDNLIQRYLD 628
V++ D+ ++ +D
Sbjct: 276 GDVSIKDSDLKNIMD 290
>gi|261880044|ref|ZP_06006471.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270333284|gb|EFA44070.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 474
Score = 44.5 bits (102), Expect = 0.058, Method: Composition-based stats.
Identities = 43/418 (10%), Positives = 109/418 (26%), Gaps = 29/418 (6%)
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ + +++ + E K + ++ + ++
Sbjct: 80 DTMLSFRQEFSGYRDQQIRPAMISEEDVEAEARKIYRQTQQQVDQNGGMVHVAHILVMMK 139
Query: 271 TVEQLVFPNQKEAD--EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADS 328
+ + +++LKKG F LA++ + + G ++ +
Sbjct: 140 QQATPDENRKAKVRIDSVYEALKKGADFAALAKQVSQDPGSANNGG-------ELPMIVK 192
Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
+L + D + + +Q +
Sbjct: 193 GQTLKEFEDVAWSLKDGEMSEPFMSPAGWHIVLKKGHQNFYSYDSQRDAIMKYIDQRGLR 252
Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
+++ S E ++ ++ + + Y + LL
Sbjct: 253 EQIINAKLDTLSKQEHVSTAALLEAKRKEME---EKDPSLKYLIREYYDGLLLYEISNRT 309
Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
K ++ + K EE K + KA + +
Sbjct: 310 VWDKAQKDERGLQAFF------KKNKKKYKWEEPRFKGIAYHTRDKKDVKAVVKAVRKL- 362
Query: 509 EYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
F + L + + + R+ E F + V + +
Sbjct: 363 -------PFDMWAEKLRTTF-NADSVLRIKVEKGLFKKGDNALVDRKMFKTDTVPALMKD 414
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
Y V K+ +E + + L +A L+ +Y VTV++N+++
Sbjct: 415 FPY--TNVYGKKLKAPKEMSDVRALVVSDYQDYLEKQWVAQLRRKYQVTVNENVLETV 470
>gi|229143873|ref|ZP_04272292.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST24]
gi|228639634|gb|EEK96045.1| Foldase protein prsA 2 [Bacillus cereus BDRD-ST24]
Length = 285
Score = 44.5 bits (102), Expect = 0.058, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 56/149 (37%), Gaps = 7/149 (4%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V K + K ++A ++ + G +F ++ K LL+ ++ +
Sbjct: 125 TEKDVKDHYKPEIKASHILVSDENEAKEIKSKLD-AGASFEELAKQESQDLLSKDKGGDL 183
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + + + + + P+++ Y V K+T+ K + KD L
Sbjct: 184 GYFNSGTMAPEFETAAYKLNIGQISN-PVKSSNGYHVIKLTDKKALKPYDEVKDSIRKNL 242
Query: 595 TQMMNKD--LLDSVIAYLKSQYSVTVHDN 621
+ D ++ + ++ ++D+
Sbjct: 243 EEERTADPVFSKKLLQEELKKANIKINDS 271
>gi|188996490|ref|YP_001930741.1| SurA domain protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|188931557|gb|ACD66187.1| SurA domain protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 290
Score = 44.5 bits (102), Expect = 0.058, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 43/131 (32%), Gaps = 21/131 (16%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V+ V + V S + ++ DK++ + +++ L
Sbjct: 35 DKVVLVVNGEPVLKSDLEFAKN------------------WYNIKDDKEVEEKIINSFLL 76
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q +G+ V + +G + + F +L GI+ + + + +
Sbjct: 77 AQQARKMGISVSPQEVDNAVLNIAKANGIN---DLETFKKKLEDSGISYSKLKEFLARDM 133
Query: 160 SRTDVVGMFVG 170
++ +++
Sbjct: 134 LANRLLHLYMR 144
>gi|172060877|ref|YP_001808529.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria MC40-6]
gi|171993394|gb|ACB64313.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria MC40-6]
Length = 260
Score = 44.5 bits (102), Expect = 0.058, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 42/119 (35%), Gaps = 2/119 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
+A L+ + K G F D+ K + +D ++ K + + +
Sbjct: 143 EQQAKDLIAKI-KGGAKFEDLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKG 201
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P++ + + + + + D+ + + Q + + L + L+ Q +
Sbjct: 202 QMTDTPVKTQFGWHIIRADDIRDVAPPPFDQVKAQIAQQIVQQKLQAFEEGLRQQAKIQ 260
Score = 42.2 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 3/156 (1%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ KK + ++ E++A Y++ + + ++ N+++A + +K G KF
Sbjct: 101 MIESFLKKNQPTDAEVKARYDELVKGAGGNREYHLHHILVDNEQQAKDLIAKIKGGAKFE 160
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVS 354
LA++ K G P A + L K + FG+ I
Sbjct: 161 DLAKQYSKDPGSGKNGGDLDWSDPKAYVPEFAAAAQKLQKGQMTDTPVKTQFGWHIIRAD 220
Query: 355 NIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
+I+ F +VK IA Q+ K + ++
Sbjct: 221 DIRDVAPPPFDQVKAQIAQQIVQQKLQAFEEGLRQQ 256
Score = 37.9 bits (85), Expect = 5.3, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + + S L + + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADAMVAQLVQQ-----------GQTDSPQLQQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIREGI 79
>gi|300023220|ref|YP_003755831.1| SurA domain protein [Hyphomicrobium denitrificans ATCC 51888]
gi|299525041|gb|ADJ23510.1| SurA domain protein [Hyphomicrobium denitrificans ATCC 51888]
Length = 442
Score = 44.5 bits (102), Expect = 0.059, Method: Composition-based stats.
Identities = 7/75 (9%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 52 PFSSFINSWKQELGMISQKIGFVV--NSERARSVGLDKKILDNLVSGATLDQFIEDIGLE 109
I ++++ + ++ +A + K+ ++ L+ Q + +
Sbjct: 165 SREEIIAIFEKKKKDFGMNLQREAFESARKASLPAVKKQAIEELIDERLKLQEAKKQSVT 224
Query: 110 ADHGRVWGEIARSPL 124
+ V I
Sbjct: 225 IEDSEVDRVITGIAE 239
Score = 40.6 bits (92), Expect = 0.73, Method: Composition-based stats.
Identities = 31/284 (10%), Positives = 76/284 (26%), Gaps = 28/284 (9%)
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
+ + + S VKK ++ + + + E + +
Sbjct: 176 KKKDFGMNLQREAFESARKASLPAVKKQAIEELIDERLKLQEAKKQSVTIEDSEVDRVIT 235
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
I+ R K+ +D K V G L + V G
Sbjct: 236 GIAERNKMT------LDQFTKQVGGSIDPMKSRIRAALSW----------NEVVRRRFGP 279
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA--EEVSSKANQLVLEYSKEGKN---- 516
+ V K+ DV+ + V+ +++ +E +++ ++
Sbjct: 280 LINVNTKDVDKMVATAAGSAQEDVELQIQRVQIMLPKKMEEHGIAQRIEEAEKVRSRFTD 339
Query: 517 -FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS--YVV 573
G I ++ + + + + + +G YVV
Sbjct: 340 CKSTAAAATGIPGAKFENI--GKRKSSTLPEPTRTLLLNASDGEMLPPSVGDGAVELYVV 397
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ K ++ + L Q + + + L+ +
Sbjct: 398 CGRDSVK-SDADKRTQAEGELKQKEFEVMARRYLKDLREDAHIE 440
>gi|86149973|ref|ZP_01068201.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|148926278|ref|ZP_01809963.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|205356305|ref|ZP_03223071.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|85839419|gb|EAQ56680.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|145845449|gb|EDK22542.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|205345910|gb|EDZ32547.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
CG8421]
Length = 271
Score = 44.5 bits (102), Expect = 0.059, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 57/188 (30%), Gaps = 25/188 (13%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + F + + + + ++ V V ++ + + K
Sbjct: 4 ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTMKALKID-------------- 47
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
K L L++ ++ +G+ + + I + NK + + F +
Sbjct: 48 -----RNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLA----QNKTTLNAFKAN 98
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L + + +++ ++ K L + + + K F + N
Sbjct: 99 LKSKNQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINA 158
Query: 201 HVPAIADP 208
++ +P
Sbjct: 159 NIYLSNNP 166
>gi|319404053|emb|CBI77641.1| Peptidyl-prolyl cis-trans isomerase [Bartonella rochalimae ATCC
BAA-1498]
Length = 319
Score = 44.5 bits (102), Expect = 0.060, Method: Composition-based stats.
Identities = 16/169 (9%), Positives = 37/169 (21%), Gaps = 17/169 (10%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+S VV+V + Q L + ++L+
Sbjct: 36 TSVVVTVNGSAITNYDIQRRIAFLKLQQKQ-------------GNLATQAKNDLIDEVLK 82
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ I+ +E V N + D L + + + + + +
Sbjct: 83 NNEIKRRNIEVSTDEVENAFENFAA----QNNMTVDQLNQMLTQTDVTVEHFKAYILGQM 138
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+V + ++R P
Sbjct: 139 GWARLVNARYQAEGGVITEQEASQRILKNGGVKPSTNEYTLQQIIFVIP 187
>gi|83942391|ref|ZP_00954852.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. EE-36]
gi|83846484|gb|EAP84360.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. EE-36]
Length = 405
Score = 44.5 bits (102), Expect = 0.060, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 17/131 (12%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V V + + + L +L+ ++
Sbjct: 31 PVAKVNESVVTEFEVQQ-----RQRFLEVLNAP--------GATREGALTSLIDERLRNE 77
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ + G+E + +A S + F L + G++ + + D +
Sbjct: 78 AVAEAGIELTPQGIEDSLAEFASRAD----LSTEEFTQALGQSGVSRETFRDFVVNSVGW 133
Query: 162 TDVVGMFVGGM 172
++V
Sbjct: 134 RELVRARYASR 144
>gi|329119266|ref|ZP_08247953.1| sura/ppiase domain protein [Neisseria bacilliformis ATCC BAA-1200]
gi|327464613|gb|EGF10911.1| sura/ppiase domain protein [Neisseria bacilliformis ATCC BAA-1200]
Length = 321
Score = 44.5 bits (102), Expect = 0.060, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 7/87 (8%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
G + N+ I L + IL LV+ A +
Sbjct: 29 DGIAAVAGDAVITVRQLDNAAAAARQSIPAAQRPS-------ENELRRHILAQLVNRALV 81
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFH 126
Q + G+ A +A +
Sbjct: 82 VQAGKRRGITASEAETDEALAHAAAQK 108
>gi|317010455|gb|ADU84202.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
SouthAfrica7]
Length = 299
Score = 44.5 bits (102), Expect = 0.060, Method: Composition-based stats.
Identities = 20/256 (7%), Positives = 61/256 (23%), Gaps = 14/256 (5%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
M + + K E+ + ++ + + L ++ +
Sbjct: 54 KSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLDQTPEFKAMMEAVK 113
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
A+ F + + + K + + +E
Sbjct: 114 RQALVE-----FWAKKQAEEVKKIQIPEKEMQDFYNANKDQ-----LFVKQEAHARHILV 163
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +S Q + + + S N + + D
Sbjct: 164 KTEDEAKRIISEIDKQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFS 223
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----S 605
F+ P++ Y + + + ++ + M+ + L
Sbjct: 224 KAAFALTPGTYTKTPVKTEFGYHIIYLISKDSPITYTYEQAKPTIKGMLQEKLFQERMNQ 283
Query: 606 VIAYLKSQYSVTVHDN 621
I L+ + +++
Sbjct: 284 RIEELRKHAKIVINNK 299
>gi|299783438|gb|ADJ41436.1| Peptidylprolyl isomerase [Lactobacillus fermentum CECT 5716]
Length = 330
Score = 44.5 bits (102), Expect = 0.060, Method: Composition-based stats.
Identities = 27/255 (10%), Positives = 71/255 (27%), Gaps = 11/255 (4%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
E V + +V + A V
Sbjct: 36 TESEYYSSMKQTSNGKQVLQQMILDKVLEKQYGSKVSTSEVNSEYNAYKKEYGSSFSTVL 95
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
++ +K + + ++ L++ + +T + A
Sbjct: 96 SEEGLTAKSFKQQIRSNLLLKAAVRNYSTFSSSALKKQWKKYEPKVQTAEILVGSKETAQ 155
Query: 505 QLVLEYSK----EGKNFRDIGKNLGASLLTTNQ---INRMDNENKFFGYDGISQVFSGPV 557
++ + + K F+ + K+ T + ++ DN + F+
Sbjct: 156 SIIDTLNNTSGSKLKEFKKLAKSKSTDTTTKSNGGVLSAFDNTDTSLPSAYRKAAFALKT 215
Query: 558 EMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYL-TQMMNKDLL-DSVIAYLKSQ 613
P++ Y V + +K + TQ +N +V++ + +
Sbjct: 216 GEYTTEPVKTDNGYYVIYMIKHPAKGKYSSHISDLKDQIVTQNLNNSTFLHNVVSKVLKK 275
Query: 614 YSVTVHDNLIQRYLD 628
V++ D+ ++ +D
Sbjct: 276 GDVSIKDSDLKNIMD 290
>gi|83953611|ref|ZP_00962332.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. NAS-14.1]
gi|83841556|gb|EAP80725.1| PPIC-type PPIASE domain protein [Sulfitobacter sp. NAS-14.1]
Length = 405
Score = 44.5 bits (102), Expect = 0.060, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 17/131 (12%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V V + + + L +L+ ++
Sbjct: 31 PVAKVNESVVTEFEVQQ-----RQRFLEVLNAP--------GATREGALTSLIDERLRNE 77
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ + G+E + +A S + F L + G++ + + D +
Sbjct: 78 AVAEAGIELTPQGIEDSLAEFASRAD----LSTEEFTQALGQSGVSRETFRDFVVNSVGW 133
Query: 162 TDVVGMFVGGM 172
++V
Sbjct: 134 RELVRARYASR 144
Score = 37.9 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 18/191 (9%), Positives = 51/191 (26%), Gaps = 10/191 (5%)
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
+ L + P + +P+ + Q+++ +
Sbjct: 219 PWQNLTDLPPSLQPLILNLAPGEVTDPLPIPN-AVALFQLRDIEETSVTAPTYSEIEYAA 277
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
+ E ++A Q+ + I K A + + R+ D
Sbjct: 278 YYIPGGRTEAALAQAAQIRGRIDTC-DDLYGIAKGQPAEV-----LERVKKAPSDIPQDV 331
Query: 549 ISQVFSGPVEMVKC-FPIENGLSYVVFKVTNSKVGP--VQEKDKFISYLTQMMNKDLLDS 605
++ V NG + ++ + ++ + L Q +
Sbjct: 332 AIELSKLDTGEVSTTLTRANGQTLMLLMMCGRTAAANASASREDVTNALRQERLTGYAEQ 391
Query: 606 VIAYLKSQYSV 616
++ L++ +
Sbjct: 392 LLEQLRADARI 402
>gi|297379400|gb|ADI34287.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori v225d]
Length = 299
Score = 44.5 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 20/255 (7%), Positives = 60/255 (23%), Gaps = 14/255 (5%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
M + + K E+ + ++ + + L ++ +
Sbjct: 55 KSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDQTPEFKAMIEAVK 114
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
A+ F + + + K + + +E
Sbjct: 115 KQALVE-----FWAKKQAEEVKKIQIPEKEMQDFYNANKDQ-----LFVKQEAHARHILV 164
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +S Q + + + S N + + D
Sbjct: 165 KTEDEAKRIISEIDKQPKAKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFS 224
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----S 605
F+ P++ Y + + + ++ + M+ + L
Sbjct: 225 KAAFALTPGDYTKTPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQ 284
Query: 606 VIAYLKSQYSVTVHD 620
I L+ + ++
Sbjct: 285 RIEELRKHAKIVINK 299
>gi|121612944|ref|YP_001000964.1| hypothetical protein CJJ81176_1306 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|167005873|ref|ZP_02271631.1| hypothetical protein Cjejjejuni_06850 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|87249622|gb|EAQ72581.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
81-176]
Length = 271
Score = 44.5 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 57/188 (30%), Gaps = 25/188 (13%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + F + + + + ++ V V ++ + + K
Sbjct: 4 ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTMKALKID-------------- 47
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
K L L++ ++ +G+ + + I + NK + + F +
Sbjct: 48 -----RNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLA----QNKTTLNAFKAN 98
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L + + +++ ++ K L + + + K F + N
Sbjct: 99 LKSKNRSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINA 158
Query: 201 HVPAIADP 208
++ +P
Sbjct: 159 NIYLSNNP 166
>gi|254797079|ref|YP_003081917.1| hypothetical protein NRI_0706 [Neorickettsia risticii str.
Illinois]
gi|254590325|gb|ACT69687.1| conserved hypothetical protein [Neorickettsia risticii str.
Illinois]
Length = 307
Score = 44.5 bits (102), Expect = 0.062, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 17/112 (15%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+ ++ VV + F + L V T VG + N ++ + M+ +K
Sbjct: 1 MFRVICVVFLLSF--FSLPSYSIEV---KTAAMVGDVIISNQDVHN-YQNLVVMLGEKSD 54
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
++ L+ ++ Q+ + +GL + +
Sbjct: 55 LSYSA-----------ALEQMIDLEVCYQYAKRVGLPFSDQKYDAALKHLQA 95
>gi|75675872|ref|YP_318293.1| hypothetical protein Nwi_1680 [Nitrobacter winogradskyi Nb-255]
gi|74420742|gb|ABA04941.1| conserved unknown protein [Nitrobacter winogradskyi Nb-255]
Length = 314
Score = 44.5 bits (102), Expect = 0.064, Method: Composition-based stats.
Identities = 23/232 (9%), Positives = 50/232 (21%), Gaps = 18/232 (7%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L F + S V V + + + + S
Sbjct: 12 LLAVFAFLTFVSMNSPLHAQSIAVMVNGEPITTLDIEQ-----RSRLIKISTHKSPS--- 63
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
++++D L+ + + G+ + A G S +
Sbjct: 64 -----RQEVIDELIDEKVKVKEAKKYGVNPTSTDIDRAYANM----GARMGMSPEQLTKS 114
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L +GI L +V D + I
Sbjct: 115 LGSQGIRPDTIKSRLKADLVWGSLVRGRFKESLLV-SDRDVNEALKNSGEDQSKIEGVEY 173
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ + T + + N +R+ + + + E
Sbjct: 174 QMRPVVLIVPRGATASMVEARRNEANALRERVQSCAEIIRTVKVMRNATLRE 225
>gi|52144166|ref|YP_082662.1| peptidylprolyl isomerase [Bacillus cereus E33L]
gi|51977635|gb|AAU19185.1| peptidyl-prolyl cis-trans isomerase (protein export protein)
[Bacillus cereus E33L]
Length = 285
Score = 44.5 bits (102), Expect = 0.064, Method: Composition-based stats.
Identities = 30/267 (11%), Positives = 89/267 (33%), Gaps = 20/267 (7%)
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
K A T ++ + K+L++ + +++ + D +
Sbjct: 21 CGQKDSSATVATATDSTITKSDFEKQLKDRYGKDMLYEMMAQDVITKKYKVSEDDVDKEV 80
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
K K +K L + L + + E ++V
Sbjct: 81 QKAKSQYGDQFKNILKNNGLKDEADFKNQIKFKLAMNEAIKKSVTE---------KDVKA 131
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF- 543
K + K ++A ++ + G +F ++ K LL+ + + N
Sbjct: 132 HYKPEIKASHILVSDENEAKEIKKKLDV-GASFEELAKQESQDLLSKEKGGDLGYFNSGR 190
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603
+ + + V + P+++ Y + K+T+ K ++ D+ + + + ++ +
Sbjct: 191 MAPEFETAAYKLKVGQISN-PVKSPNGYHIIKLTDKK--ELKPYDEVKDSIRKNLEEERI 247
Query: 604 DS------VIAYLKSQYSVTVHDNLIQ 624
++ + ++ ++D+ ++
Sbjct: 248 ADPTFSHKLLQKELKKANIKINDSELE 274
>gi|329942708|ref|ZP_08291487.1| putative inner membrane protein [Chlamydophila psittaci Cal10]
gi|332287303|ref|YP_004422204.1| hypothetical protein CPSIT_0388 [Chlamydophila psittaci 6BC]
gi|325506721|gb|ADZ18359.1| hypothetical protein CPSIT_0388 [Chlamydophila psittaci 6BC]
gi|328814968|gb|EGF84957.1| putative inner membrane protein [Chlamydophila psittaci Cal10]
Length = 688
Score = 44.1 bits (101), Expect = 0.064, Method: Composition-based stats.
Identities = 42/359 (11%), Positives = 84/359 (23%), Gaps = 25/359 (6%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINS 59
ML K + ++ + + V + WG S V SV +K F+
Sbjct: 1 MLAFFYKHQKKFIGLVIVGVCVSGIGIGWGRYPGESSRGSKKVVFSVPGKKYSEKEFLAF 60
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ G L ++ L N + +
Sbjct: 61 KRFFTNEAYPFTGNPQEWNFLNEGLLTERFLTNKLGEKLFLKVYS--------------- 105
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM----RPS 175
P F + N ++ F + K + L + V R
Sbjct: 106 QNYPAFKKEKNYQAYRRFDTPFISSEEVWKSSAPRLYQALIALQEIHDPVSPEGFVARVQ 165
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
L ++ Y + ++Y A L + + ++ Y +
Sbjct: 166 LFLEEKKFPHYILKQMLEYRRQMFNLPQDPALVQGKDLHLFGYRNISDWFGDAYVSAAVE 225
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
E+K ++ L+ + ++K + + + A G
Sbjct: 226 ALLRFVNEQKKHVAMPSLKEAQQDFQDKARQAFTKLSKHAGLTLSFDQFVASYFDFMGVS 285
Query: 296 FIQLAEEQG-----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ K GS + +Y P F
Sbjct: 286 EAEFFNIYREILLCKRAFLQLEGSVTFDYRPLQEFFSMGRDSTSVEMVKLPREYQFKNK 344
>gi|237725282|ref|ZP_04555763.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D4]
gi|229436548|gb|EEO46625.1| peptidyl-prolyl cis-trans isomerase [Bacteroides dorei 5_1_36/D4]
Length = 446
Score = 44.1 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 36/482 (7%), Positives = 116/482 (24%), Gaps = 63/482 (13%)
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ +G ++ + ++ +I + A +
Sbjct: 16 FAFKMRAQGEVVLSIGGEPVKRTEFEYYFRKSHKHTPDSFLSSFINYKLKVHYAHDTGID 75
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ + + + + + ++ + ++ +
Sbjct: 76 TLSAFRRQMAWYRGKLLKKYLVDAEKEEQTVRQLYLRSEQRLQTNDWIRIAHISKYLPQN 135
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
Q ++ D + +L+ G F LA + ++G + ++ + I
Sbjct: 136 VGRQDELRVLQQMDSVYAALQGGADFSALACRYSDDTTCKNMGGLLPWMPVNKNMQEWID 195
Query: 331 S--LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
+K + + G I + KP + E+ +E
Sbjct: 196 KLASLEKNKISAPFYSPMGIHIIKWIDRKPGI-------------------SFEEKREQL 236
Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
E T + + + + ++ + + + LL +
Sbjct: 237 LNYLEKNGNRTWQELSAGQRERLAFQVQEL-----------------HDGLLAACLSQKY 279
Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQ 505
+ + V + + S+
Sbjct: 280 QSGDGTWQESDLEHFFKQHKSDYSWDLPHYRGAVIHCKDKKMASAIKKQLKRKPVSQWED 339
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF-GYDGISQVFSGPVEMVKCFP 564
++ + + + T I+++ + F + VF ++ K
Sbjct: 340 VLHRLIGNASFPKARIEAGVFQIGTNRYIDKLVFKCGDFQPDPALPYVFVMGKKLKKG-- 397
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + + + D+ + LK +Y V ++ +++
Sbjct: 398 -------------------PESYEDVKDAVIKDYQAVYQDAWLKDLKRKYKVEINQEVLK 438
Query: 625 RY 626
Sbjct: 439 TV 440
>gi|326778877|ref|ZP_08238142.1| putative lipoprotein [Streptomyces cf. griseus XylebKG-1]
gi|326659210|gb|EGE44056.1| putative lipoprotein [Streptomyces cf. griseus XylebKG-1]
Length = 218
Score = 44.1 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 6/133 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
A + S VG +++ S+ + +Q+ +S L++ L
Sbjct: 23 SACGNQSHPGAAAVVGGERIEVSTVQDRAADVRS--AQENSPEAAQLVNKSGQLNRAKLH 80
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
L+ G LD+ D G+ + S G + +F L + + +
Sbjct: 81 GLIFGRILDRAAADAGVAVTRKEIQEMRKASGAQQGGEERFE----AMMLQQRWVAPDQI 136
Query: 152 IDHYTKMLSRTDV 164
+ + +
Sbjct: 137 DADMRQEVQLPKL 149
>gi|197117512|ref|YP_002137939.1| hypothetical protein Gbem_1123 [Geobacter bemidjiensis Bem]
gi|197086872|gb|ACH38143.1| conserved hypothetical protein [Geobacter bemidjiensis Bem]
Length = 613
Score = 44.1 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 50/581 (8%), Positives = 148/581 (25%), Gaps = 72/581 (12%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
+ SV +K+ + +++ + + + L+ L++ + Q
Sbjct: 96 PLASVNDEKITLGDLQKALMSLHEKMTE-------EKEVSAKKNFMEPLERLINVKLVVQ 148
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+++ L+ KF+ L E + + + + + R
Sbjct: 149 EAKNMELDRQDE-----------IKSNLEKFADQQLRQVLFLERVKDIKPDERKVQKEYR 197
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ M + + + +A ++ + + A+ + Q+
Sbjct: 198 DTIKEMKLKSLIFKKDTVAKAFIEELKHGKKFDELRDKALKDGKAETAGQDEQQYATNAA 257
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
E +++ + V + +
Sbjct: 258 LGPVVSAGLADVKAGGISPIIEIMNGFLVAKVEEIRYVDNPAGLEQARSKVLSQMKLDSL 317
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+A +A K K+ +L + L +K+ + L D ++ KG+
Sbjct: 318 KAYKAELVKKYAKENTKLVKS---------LDFEAKKPGFEKLLTDKRVVMSIKGEEPIR 368
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ + + + + + ++ + + K ++ +
Sbjct: 369 VSDLAEALNSKFFHGIDNAIKEKKLNREKLLALDELESVRVFKKAALEKGLDKSEEYLKR 428
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
E + + + V +K + + + + K +
Sbjct: 429 IEDHKTTVLFGAFIEKV------IKPDVTFTVAEIKDYYEKHISEYAAPEKMQIQGIAFT 482
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ ++++ V W +V+ A L+
Sbjct: 483 K---------KDDAQKAIDKLREGVDFAWLRNNADGQVAKNARDLL-------------- 519
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
Q N + + + + G SY +F V +
Sbjct: 520 -----------QFNEEALTLQSMPEPMQKVLKDAHKGDYRLYESPEGYSYALF-VKEKEE 567
Query: 582 GPVQEKDKFISYLTQMMN----KDLLDSVIAYLKSQYSVTV 618
+ ++ + Q + ++ L+ Y V +
Sbjct: 568 AKARPLEEVKDEVGQKVAWLNLTQDIEKWFKKLREAYPVKI 608
>gi|86150833|ref|ZP_01069049.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|315124743|ref|YP_004066747.1| hypothetical protein ICDCCJ07001_1237 [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|85842003|gb|EAQ59249.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|315018465|gb|ADT66558.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 271
Score = 44.1 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 57/188 (30%), Gaps = 25/188 (13%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + F + + + + ++ V V ++ + + K
Sbjct: 4 ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTMKALKID-------------- 47
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
K L L++ ++ +G+ + + I + NK + + F +
Sbjct: 48 -----RNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLA----QNKTTLNAFKAN 98
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L + + +++ ++ K L + + + K F + N
Sbjct: 99 LKSKNQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINA 158
Query: 201 HVPAIADP 208
++ +P
Sbjct: 159 NIYLSNNP 166
>gi|86153052|ref|ZP_01071257.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88596815|ref|ZP_01100052.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|157415552|ref|YP_001482808.1| hypothetical protein C8J_1232 [Campylobacter jejuni subsp. jejuni
81116]
gi|85843937|gb|EAQ61147.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88191656|gb|EAQ95628.1| conserved hypothetical protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|157386516|gb|ABV52831.1| hypothetical protein C8J_1232 [Campylobacter jejuni subsp. jejuni
81116]
gi|284926513|gb|ADC28865.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
IA3902]
gi|307748192|gb|ADN91462.1| probable periplasmic protein [Campylobacter jejuni subsp. jejuni
M1]
gi|315932440|gb|EFV11383.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
327]
Length = 271
Score = 44.1 bits (101), Expect = 0.065, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 57/188 (30%), Gaps = 25/188 (13%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + F + + + + ++ V V ++ + + K
Sbjct: 4 ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTMKALKID-------------- 47
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
K L L++ ++ +G+ + + I + NK + + F +
Sbjct: 48 -----RNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLA----QNKTTLNAFKAN 98
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L + + +++ ++ K L + + + K F + N
Sbjct: 99 LKSKNQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINA 158
Query: 201 HVPAIADP 208
++ +P
Sbjct: 159 NIYLSNNP 166
>gi|303241900|ref|ZP_07328394.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
cellulolyticus CD2]
gi|302590574|gb|EFL60328.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
cellulolyticus CD2]
Length = 495
Score = 44.1 bits (101), Expect = 0.066, Method: Composition-based stats.
Identities = 49/357 (13%), Positives = 90/357 (25%), Gaps = 73/357 (20%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V SV Q + F + + ++ L DNLV L Q
Sbjct: 196 IVGSVNGQALHKKDFDYIFNPQYNNFKNNNTTEPTETDLKT--LKDTCFDNLVLYTVLMQ 253
Query: 102 FIEDIGLEADHG---RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ I +G F
Sbjct: 254 KAAKGNYTLSESDYGEINDTINSYIQAYGGVENF-------------------------- 287
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+F R I + + S + +++E
Sbjct: 288 -------------RSIMEESGVTLYQFSNNLRDSKLINKMALDLVTNVNASEETIKKYYE 334
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
K Y PE R +ILF E + +
Sbjct: 335 DNKSMYIQPEQVRAKHILFSTKEITGEDYDAQK------------------------KAE 370
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGS---FSKEYIPDVSLADSIFSLAKK 335
+K+A+E +K G F +L + + + + FSK + + K
Sbjct: 371 IKKKAEEVLAQIKAGADFDELMNKYTEDPGTANYPNGYTFSKGEMVQE--FEEKSFSMKV 428
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
G+ + ++ FGY I + P + +VK I ++ + + + +
Sbjct: 429 GEISDLVETQFGYHIIKLEEKIPETQLKLDDVKDSIKAELDPQEKQNYFDKLLVQFK 485
>gi|213613182|ref|ZP_03371008.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 240
Score = 44.1 bits (101), Expect = 0.067, Method: Composition-based stats.
Identities = 17/239 (7%), Positives = 57/239 (23%), Gaps = 8/239 (3%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
++ + ++ + K+ D I + +
Sbjct: 2 EQVNDAQRQAESIVEEARNGADFGKLAI--TYSADQQALKGGQMGWGRIQELPGIFAQAL 59
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKA 503
+ G ++ ++ + EV + + ++ K
Sbjct: 60 STAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQARLKL 119
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKC 562
++ + F K + NQ + F + +
Sbjct: 120 EEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQI-S 178
Query: 563 FPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P+ + + + ++ +KD+ L + + + ++ V +
Sbjct: 179 APVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKI 237
>gi|222528264|ref|YP_002572146.1| hypothetical protein Athe_0222 [Caldicellulosiruptor bescii DSM
6725]
gi|222455111|gb|ACM59373.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM
6725]
Length = 237
Score = 44.1 bits (101), Expect = 0.067, Method: Composition-based stats.
Identities = 17/223 (7%), Positives = 57/223 (25%), Gaps = 19/223 (8%)
Query: 5 IRKASRTWVAKIFLVVLFVP------FLIWGLSDALFS---------VSGSSTVVSVGRQ 49
+++ + + + L++ ++ G + F+ + S + V
Sbjct: 1 MKRKTINILVFVVLIIAIAGGVLLKKTVLSGEDNLSFTVKKTLEIEKSNNSDIIAKVDGI 60
Query: 50 KVPFSSFINS--WKQELGMISQKIGFVVNSERARS--VGLDKKILDNLVSGATLDQFIED 105
+ + +++ K+G + + K++L+ L+ L + +
Sbjct: 61 PIYKKDLEIADLYEKVRFDNLAKLGAITKQNTLVTPYQKTKKELLNELIERKALMESAKK 120
Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
G + + Y ++ V+
Sbjct: 121 EGYLVSKEEAEDYFNNVKKTIDDVLNEKIKGDIENAKQAKEVLDMYKTQLSENEFNEKVI 180
Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + S L + + E+ + +
Sbjct: 181 SAYQEILTISKYLNAKVDEYVKEHPNATPDEVKKFINDFKKKV 223
>gi|47568364|ref|ZP_00239065.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241]
gi|47554912|gb|EAL13262.1| peptidyl-prolyl cis-trans isomerase [Bacillus cereus G9241]
Length = 285
Score = 44.1 bits (101), Expect = 0.067, Method: Composition-based stats.
Identities = 29/244 (11%), Positives = 77/244 (31%), Gaps = 16/244 (6%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + +++ + D + K K + L
Sbjct: 42 DFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDADVDKEVQKAKNQYGDQFTAVLENNRLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ L + + E ++V K + K ++A +
Sbjct: 102 DEADFKNQIKFKLAMNEAIKKSVTE---------KDVKDHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ + + N + + + V + P
Sbjct: 153 IKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGKMTPEFETAAYKLKVGQI-SDP 210
Query: 565 IENGLSYVVFKVTNSKV--GPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHD 620
+++ Y + K+T K + KD L D ++ + ++ ++D
Sbjct: 211 VQSPNGYHIIKLTGKKDLQPFNEVKDSIRKNLEAERIADPTFSHKLLQKELKKANIKIND 270
Query: 621 NLIQ 624
+ ++
Sbjct: 271 SELE 274
>gi|229068819|ref|ZP_04202115.1| Foldase protein prsA 2 [Bacillus cereus F65185]
gi|229078459|ref|ZP_04211020.1| Foldase protein prsA 2 [Bacillus cereus Rock4-2]
gi|229189353|ref|ZP_04316373.1| Foldase protein prsA 2 [Bacillus cereus ATCC 10876]
gi|228594147|gb|EEK51946.1| Foldase protein prsA 2 [Bacillus cereus ATCC 10876]
gi|228704881|gb|EEL57306.1| Foldase protein prsA 2 [Bacillus cereus Rock4-2]
gi|228714327|gb|EEL66206.1| Foldase protein prsA 2 [Bacillus cereus F65185]
Length = 285
Score = 44.1 bits (101), Expect = 0.068, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 60/151 (39%), Gaps = 11/151 (7%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V K + K ++A ++ + G +F ++ K LL+ ++ +
Sbjct: 125 TEKDVKDHYKPEIKASHILVSDENEAKEIKSKLD-AGASFEELAKQESQDLLSKDKGGDL 183
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596
+ + + + V + P+++ Y V K+T+ K ++ D+ + + +
Sbjct: 184 GYFNSGTMAPEFETAAYKLNVGQISN-PVKSSNGYHVIKLTDKK--DLKPYDEVKNSIRK 240
Query: 597 MMNKD------LLDSVIAYLKSQYSVTVHDN 621
+ ++ ++ + ++ ++D+
Sbjct: 241 NLEEERTADPVFSKKLLQEELKKANIKINDS 271
>gi|163940109|ref|YP_001644993.1| peptidylprolyl isomerase [Bacillus weihenstephanensis KBAB4]
gi|229011588|ref|ZP_04168774.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048]
gi|229059985|ref|ZP_04197359.1| Foldase protein prsA 1 [Bacillus cereus AH603]
gi|229133173|ref|ZP_04262008.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196]
gi|163862306|gb|ABY43365.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
weihenstephanensis KBAB4]
gi|228650299|gb|EEL06299.1| Foldase protein prsA 1 [Bacillus cereus BDRD-ST196]
gi|228719398|gb|EEL71002.1| Foldase protein prsA 1 [Bacillus cereus AH603]
gi|228749743|gb|EEL99582.1| Foldase protein prsA 1 [Bacillus mycoides DSM 2048]
Length = 283
Score = 44.1 bits (101), Expect = 0.068, Method: Composition-based stats.
Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 9/148 (6%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A ++ + G++F + K + Q +
Sbjct: 123 TDKDVKDNHKPEMKVSHILVKDEKTAKEVKEKI-NNGEDFTALAKQYSEDTGSKEQGGEI 181
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V PI+ Y + KVT+ K + KD L
Sbjct: 182 AGFAPGQTVKEFEEAAYKLDAGQV-SEPIKTSYGYHIIKVTDKKELKPFDEVKDTIRKDL 240
Query: 595 TQMMNKDL----LDSVIAYLKSQYSVTV 618
Q +D VI L + + V
Sbjct: 241 EQQRLQDATGKWKQQVINDLLKEADIKV 268
>gi|229010553|ref|ZP_04167755.1| Foldase protein prsA 2 [Bacillus mycoides DSM 2048]
gi|228750751|gb|EEM00575.1| Foldase protein prsA 2 [Bacillus mycoides DSM 2048]
Length = 285
Score = 44.1 bits (101), Expect = 0.068, Method: Composition-based stats.
Identities = 20/219 (9%), Positives = 66/219 (30%), Gaps = 11/219 (5%)
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ ++ K + + F ++ +
Sbjct: 57 YEMVAQDVITKKYKVSDDAVDKEVEKAKDQYGEQFKATLENNRLKDEEDFKNQIKFKLAL 116
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ ++V K + K ++A ++ + G +F ++ K L
Sbjct: 117 NEAIKQSVTEKDVKDHYKPEIKASHILVSNENEAKEIKKKLDT-GTSFEELAKQESQDLA 175
Query: 530 TTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + + + + + + P+++ Y + K+T+ K +Q D
Sbjct: 176 SKDNGGDLGYFGAGKMTPEFEKAAYKLKPDQISN-PVKSPNGYHIIKLTDKK--DLQPYD 232
Query: 589 KFISYLTQMMNKDLL------DSVIAYLKSQYSVTVHDN 621
K + + + ++ L ++ + + ++D+
Sbjct: 233 KVKDSIRKDLEEERLADPSFGQKLLQGELKKADIKINDS 271
>gi|206603475|gb|EDZ39955.1| Probable peptidil-prolyl cis-trans isomerase [Leptospirillum sp.
Group II '5-way CG']
Length = 289
Score = 44.1 bits (101), Expect = 0.069, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 542 KFFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFK--VTNSKVGPVQEKDKFISYLTQMM 598
+S F P P+++G+ Y V ++ Q +D +YL
Sbjct: 185 GTVPPKFVSFFFGVPEGSITGPIPLKDGIHYFKIDRSVKGVQLTLDQARDGIRNYLRNRQ 244
Query: 599 NKDLLDSVIAYLKSQYSVTVHDNLI 623
NK + +++ +L+S +V +++ +
Sbjct: 245 NKTIYQTLVNHLRSTTTVQINNKAL 269
Score = 41.4 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 8/74 (10%), Positives = 21/74 (28%), Gaps = 12/74 (16%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S + VG + + + ++ + ++L+ +V + L
Sbjct: 30 DSVLAKVGDTTISQADLKKKLDS------------MGLASSKDPNVTSELLNQMVDNSLL 77
Query: 100 DQFIEDIGLEADHG 113
GL+
Sbjct: 78 AMEARKEGLDKTPE 91
>gi|301597698|ref|ZP_07242706.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB059]
Length = 344
Score = 44.1 bits (101), Expect = 0.070, Method: Composition-based stats.
Identities = 21/283 (7%), Positives = 80/283 (28%), Gaps = 5/283 (1%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I +F + + A E ++++
Sbjct: 58 QQQVMSRIKISDQDVDNFLKSPQGQAALGNQAHVIHMRISGDNPQEVQNVAKEVRSQLAQ 117
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ ++ + + L +++ DG ++
Sbjct: 118 SNDLNALKKLSTATVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLK 177
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
++ + + + T + + E + + + + K G++F +
Sbjct: 178 LLERKQNEQKALVPQYQTRHILIQPSEVVSPENAKQIIDSIYKRLKAGEDFATLAATYSN 237
Query: 527 SLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
+ + + + ++ PV + P + + + +VT+ + +
Sbjct: 238 DTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEI-SEPFQTQFGWHILQVTDKREKDMT 296
Query: 585 -QEKDKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +++ + +DS + +++ V + D + +
Sbjct: 297 HEYQERMARQILGERQFNTEIDSWLREVRANAYVEIKDPSLDK 339
>gi|289642554|ref|ZP_06474697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Frankia symbiont of
Datisca glomerata]
gi|289507642|gb|EFD28598.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Frankia symbiont of
Datisca glomerata]
Length = 391
Score = 44.1 bits (101), Expect = 0.071, Method: Composition-based stats.
Identities = 20/159 (12%), Positives = 43/159 (27%), Gaps = 7/159 (4%)
Query: 464 MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKN 523
+ + + V +A+Q+V +++G +F +
Sbjct: 170 AVATVTDDQLPSYYESHRADFAVPAQRHLRNIVVATREEADQVV-RRARDGADFAALAGE 228
Query: 524 LGASLLTTNQINRMDN-ENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
T + + + F+ PV V P++ + V +V +
Sbjct: 229 TSLDESTRSSQGDLGFVTASQLDAEYAKAAFAVPVGSVFG-PVQTRYGWNVGQVLEDRPA 287
Query: 583 P----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
Q KD+ L + +A V
Sbjct: 288 SQPSFEQVKDQVRDALRSERAVATWRTWLADRIRAADVE 326
>gi|147669657|ref|YP_001214475.1| hypothetical protein DehaBAV1_1017 [Dehalococcoides sp. BAV1]
gi|146270605|gb|ABQ17597.1| hypothetical protein DehaBAV1_1017 [Dehalococcoides sp. BAV1]
Length = 422
Score = 44.1 bits (101), Expect = 0.071, Method: Composition-based stats.
Identities = 41/410 (10%), Positives = 116/410 (28%), Gaps = 28/410 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSF 56
E RK R A L V+ + + G+ +TV++VG K + F
Sbjct: 21 FEAQRKRQRIIFATG-LSVIGIVLALVGIGVYKGWYVDQYKPMHTTVLTVGDTKYNVAYF 79
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ + G SQ + + + + + + ++G +
Sbjct: 80 VDALRHFTGGDSQ-----------YAYYFIDAVSERIQLNQLMVEKASEMGYTISDDEID 128
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I +++ + + +K +++ + +T + + S
Sbjct: 129 AAIE-------ENSLTDVPAVRDIVRASLLTDKLKTEYFDTQVPQTAEQREALAMLLESE 181
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ S ++ + + Y + ++ +
Sbjct: 182 NAASDVLAGIITDEEFAAKAAELSLESNTKTDSGSIGFKPADTITSLYGSEILEKYIFST 241
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ + + + E+ E ++ P+++ A E L G+ +
Sbjct: 242 EGYDYALVQDADVSKQRAYWLIEVLERKTDSEQIHTLGMLLPSEQVALEVKARLAAGESW 301
Query: 297 IQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
LA E + + + + +P+ + + I Y
Sbjct: 302 GDLAVEFSQLANVEENQGDMDWITFSSVPENVADIIFATDVELNTVLDPIQDDTNYTRGG 361
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
++ +++ +D + +K + + + L S +
Sbjct: 362 CWIVRLKSIDENRQLSEDDRKLLISSKLDQWTADLKAANLDKLTNTFSDE 411
>gi|254362982|ref|ZP_04979046.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
gi|153094638|gb|EDN75442.1| peptidylprolyl isomerase [Mannheimia haemolytica PHL213]
Length = 314
Score = 44.1 bits (101), Expect = 0.072, Method: Composition-based stats.
Identities = 14/159 (8%), Positives = 45/159 (28%), Gaps = 24/159 (15%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ K V + V V + S ++ + +
Sbjct: 2 KLVKSLFAVAVATMSLT----QTAHAFEERVVALVNDTPIMQSQVQRVLGKKKATETAQ- 56
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +D ++ + Q +++ G++ V + N
Sbjct: 57 ---------------RAAIDQVIDDMLVQQAMKEAGVKVSPAAVNQAVENV----AIQNG 97
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ + L +GI +++ + + ++ V + +
Sbjct: 98 ITYGQLLDALDYQGITLEQFKRNIAQQMAMEQVRHISIS 136
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 38/123 (30%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ +K + L + + +F + K + + + V S
Sbjct: 188 QAKAKLSSLTTDINSGKISFEEAAKTHSVDYASGADGGDLGFNFLEIYDPAFANVASKIK 247
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQY 614
P ++ + + KVT+++ G E + L ++ + L+
Sbjct: 248 PNQISAPFKSQFGWHILKVTDTRNGDRTEDAYHQRAYQQLVNKQAEEASKDWVKALRKTA 307
Query: 615 SVT 617
++
Sbjct: 308 NIQ 310
>gi|68249060|ref|YP_248172.1| survival protein SurA-like protein [Haemophilus influenzae
86-028NP]
gi|68057259|gb|AAX87512.1| survival protein SurA homolog [Haemophilus influenzae 86-028NP]
Length = 313
Score = 44.1 bits (101), Expect = 0.072, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 187 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVMKSK 246
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 247 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 305
Query: 614 YSVT 617
++
Sbjct: 306 ANIQ 309
Score = 41.4 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 50/163 (30%), Gaps = 29/163 (17%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ ++ K FL+ ++ A V +V + S
Sbjct: 2 KMKKFILKSFLLATLGCVAFTSMAQA-----EERVVATVDGIPILESQV----------- 45
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+G + + LD ++ + + I++ G++ D + + + +G
Sbjct: 46 RANMGKKGD---------RQSALDKIIDDLLVQKAIQESGVKIDPREIDRVVEDTAARNG 96
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ F+ L +GI+ + + V +
Sbjct: 97 ----LTYGQFLDALDYQGISLNTFRQQIANQMVMGAVRNKAIQ 135
>gi|229171909|ref|ZP_04299476.1| Foldase protein prsA 2 [Bacillus cereus MM3]
gi|228611543|gb|EEK68798.1| Foldase protein prsA 2 [Bacillus cereus MM3]
Length = 285
Score = 44.1 bits (101), Expect = 0.073, Method: Composition-based stats.
Identities = 27/246 (10%), Positives = 84/246 (34%), Gaps = 20/246 (8%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + +++ + D + K K+ + L
Sbjct: 42 DFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDDDVDKEVQKAKKQYGDQFTAVLENNRLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ L + + E ++V K + K ++A +
Sbjct: 102 DEADFKNQIKFKLAMNEAIKKSVTE---------KDVKDHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ ++ + N + + + V + P
Sbjct: 153 IKKKLD-AGASFEELAKQESQDLLSKDKGGDLGYFNSGRMAPEFETAAYKLKVGQISN-P 210
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS------VIAYLKSQYSVTV 618
+++ Y + K+T+ K ++ D+ + + + + + +I + ++ +
Sbjct: 211 VKSPNGYHIIKLTDKK--DLKPYDEVKDSIRKNLEAERIADPTFSHKLIQKELKKANIKI 268
Query: 619 HDNLIQ 624
+D+ ++
Sbjct: 269 NDSDLE 274
>gi|260466949|ref|ZP_05813131.1| SurA domain protein [Mesorhizobium opportunistum WSM2075]
gi|259029246|gb|EEW30540.1| SurA domain protein [Mesorhizobium opportunistum WSM2075]
Length = 307
Score = 44.1 bits (101), Expect = 0.074, Method: Composition-based stats.
Identities = 10/127 (7%), Positives = 29/127 (22%), Gaps = 21/127 (16%)
Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE 104
V + + + + +K G ++
Sbjct: 36 VVNNVPITTGDI--AHRAAFLKLQRKKGDAA---------------QEMIDQTLRLAEAR 78
Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+G+ +V R NK + + G+ + + + ++
Sbjct: 79 RLGIRISDAQVEAAYQR----FATSNKMQLSQLNGVMEKSGVGKDHFKEFIRAQMAWNQA 134
Query: 165 VGMFVGG 171
+G
Sbjct: 135 LGARYRS 141
>gi|256372364|ref|YP_003110188.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008948|gb|ACU54515.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidimicrobium
ferrooxidans DSM 10331]
Length = 337
Score = 44.1 bits (101), Expect = 0.074, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 5/125 (4%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKN---LGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
++A +V + K G++F + K+ A+ FG + V S PV
Sbjct: 182 TEAEAVVAKLHK-GQSFAAVAKSSSTQNAAGGGALGCGTEGQYASSFGSGVATSVTSLPV 240
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + VF++T+ P + + + + LL+ +A ++
Sbjct: 241 G-TPSGVVQVPNGFAVFEITSRSEIPFSQAELLAADTMVSHGQTLLNDYLARTVHTANIH 299
Query: 618 VHDNL 622
V+ L
Sbjct: 300 VNRAL 304
>gi|114766150|ref|ZP_01445154.1| PPIC-type PPIASE domain [Pelagibaca bermudensis HTCC2601]
gi|114541610|gb|EAU44652.1| PPIC-type PPIASE domain [Roseovarius sp. HTCC2601]
Length = 408
Score = 44.1 bits (101), Expect = 0.074, Method: Composition-based stats.
Identities = 15/152 (9%), Positives = 39/152 (25%), Gaps = 17/152 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + + + + ++V + + + N
Sbjct: 12 LTAGLALTVTPGTAPAQNLFAPAITVDEMVITGYEIEQ-----RRRMMTLLNAPGNVNEL 66
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L+ + G+E + + S + FV+
Sbjct: 67 SR--------EQLIDDRLRLKAARAAGIEPSEQDILDGMDE----FAGRADLSREQFVAV 114
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
L + G++E+ + D + D+V
Sbjct: 115 LNQGGVDEETFRDFVRAGTAWRDLVRAQFASR 146
>gi|301169179|emb|CBW28776.1| survival protein SurA homolog [Haemophilus influenzae 10810]
Length = 311
Score = 44.1 bits (101), Expect = 0.074, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 185 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVMKSK 244
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 245 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 303
Query: 614 YSVT 617
++
Sbjct: 304 ANIQ 307
Score = 39.8 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 18/161 (11%), Positives = 51/161 (31%), Gaps = 29/161 (18%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ +V + FL+ ++ A G V +V + S
Sbjct: 2 KKFVLRSFLLAALGCVAFASMAQA-----GERVVATVDGIPILESQV-----------RA 45
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+G + + +D ++ + + +++ G++ D + + + +G
Sbjct: 46 NMGKKGD---------RQSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNG-- 94
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ F+ L +GI+ + + V +
Sbjct: 95 --LTYGQFLDALDYQGISLNTFRQQIANQMVMGAVRNKAIQ 133
>gi|237716901|ref|ZP_04547382.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262405669|ref|ZP_06082219.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294644391|ref|ZP_06722154.1| putative lipoprotein [Bacteroides ovatus SD CC 2a]
gi|229442884|gb|EEO48675.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262356544|gb|EEZ05634.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292640226|gb|EFF58481.1| putative lipoprotein [Bacteroides ovatus SD CC 2a]
Length = 330
Score = 44.1 bits (101), Expect = 0.074, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 14/104 (13%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + V V +++ S + KQE+ I + + ++L L+
Sbjct: 22 NKNDVVAEVNGEQILLSELASQSKQEIFDILNT-----------AYEIKSRVLAGLIKQK 70
Query: 98 TLDQFIEDIGLEAD---HGRVWGEIARSPLFHGKDNKFSHDVFV 138
L+ + + + V +I K F+ F
Sbjct: 71 LLEDAAKKENMSLEEFIDWFVQQKICVGQDSLKKRYGFNTQSFY 114
>gi|145630363|ref|ZP_01786144.1| stationary-phase survival protein SurA [Haemophilus influenzae
R3021]
gi|144984098|gb|EDJ91535.1| stationary-phase survival protein SurA [Haemophilus influenzae
R3021]
Length = 311
Score = 44.1 bits (101), Expect = 0.074, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 185 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVMKSK 244
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 245 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 303
Query: 614 YSVT 617
++
Sbjct: 304 ANIQ 307
>gi|158421935|ref|YP_001523227.1| PpiC-type peptidyl-prolyl cis-trans isomerase precursor
[Azorhizobium caulinodans ORS 571]
gi|158328824|dbj|BAF86309.1| PpiC-type peptidyl-prolyl cis-trans isomerase precursor
[Azorhizobium caulinodans ORS 571]
Length = 314
Score = 44.1 bits (101), Expect = 0.075, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
+ F V P++ + V KV + + P+ ++ + Q +
Sbjct: 208 FTKDQMVPEFADAAFKLDKGQV-SDPVKTQFGWHVIKVEDKRQKPIPTYEQVSDQIDQYL 266
Query: 599 NKDLLDSVIAYLKSQYSVT 617
+ ++ L+S V
Sbjct: 267 IRKAQSDLVTKLRSDAKVE 285
>gi|309972385|gb|ADO95586.1| Putative survival protein SurA-like protein [Haemophilus influenzae
R2846]
Length = 313
Score = 44.1 bits (101), Expect = 0.075, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 34/124 (27%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 187 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVMKSK 246
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT G K L +D + + L+ +
Sbjct: 247 QG-VISAPFKTEFGWHILEVTGVSDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 305
Query: 614 YSVT 617
++
Sbjct: 306 ANIQ 309
Score = 41.4 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 19/163 (11%), Positives = 50/163 (30%), Gaps = 29/163 (17%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ ++ K FL+ ++ A V +V + S
Sbjct: 2 KMKKFILKSFLLATLGCVAFTSMAQA-----EERVVATVDGIPILESQV----------- 45
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+G + + LD ++ + + I++ G++ D + + + +G
Sbjct: 46 RANMGKKGD---------RQSALDKIIDDLLVQKAIQESGVKIDPREIDRVVEDTAARNG 96
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ F+ L +GI+ + + V +
Sbjct: 97 ----LTYGQFLDALDYQGISLNTFRQQIANQMVMGAVRNKAIQ 135
>gi|304382090|ref|ZP_07364601.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
gi|304336688|gb|EFM02913.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
Length = 473
Score = 44.1 bits (101), Expect = 0.076, Method: Composition-based stats.
Identities = 51/372 (13%), Positives = 106/372 (28%), Gaps = 29/372 (7%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
+ ++ + ++ D + +L+ G F LAE+ + G
Sbjct: 123 DKGLIHPAHIFIRVPQNAPKEALDRAKQRIDSIYAALRGGADFATLAEKYSEDPMSARQG 182
Query: 314 SFSKEYIPDVSLAD--SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI 371
+ P +L D K G+ P + GY I + + F E+K DI
Sbjct: 183 GALPWFAPGETLEDFEKTAYRLKTGETAPPMLSFAGYHIIRMLDR--KQMEPFDELKADI 240
Query: 372 ANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVA 431
++ EK+ ++ + + + EK + + + +
Sbjct: 241 IRALKTRNIREKIADERLKEMAETSKTGKTEAQIMDEKAAEL--------SEKEQSLKYL 292
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWK 491
Y + LL K +Y K R VK+
Sbjct: 293 IAEYHDGLLLYEISNRMIWEKAAQDEAALTAYFKKHKKTYQWDSPRYKGIAY-YVKEASD 351
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
K + + KA + E ++ + + + + +
Sbjct: 352 VKKVKQCLRGKAFEEWPEVLRK-----AFNTDNTLRIRVEKGL-----FKQGDNALIDRE 401
Query: 552 VFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLK 611
VF +V+ V V + +E +T L + L+
Sbjct: 402 VFHKDTTVVQQKDCP------VAGVYGKLLKAPKEMSDVRGLVTADYQDYLEAEWVQALR 455
Query: 612 SQYSVTVHDNLI 623
+Y V +H +++
Sbjct: 456 RKYPVVIHQDVL 467
>gi|237722124|ref|ZP_04552605.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448993|gb|EEO54784.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 330
Score = 44.1 bits (101), Expect = 0.076, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 14/104 (13%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + V V +++ S + KQE+ I + + ++L L+
Sbjct: 22 NKNDVVAEVNGEQILLSELASQSKQEIFDILNT-----------AYEIKSRVLAGLIKQK 70
Query: 98 TLDQFIEDIGLEAD---HGRVWGEIARSPLFHGKDNKFSHDVFV 138
L+ + + + V +I K F+ F
Sbjct: 71 LLEDAAKKENMSLEEFIDWFVQQKICVGQDSLKKRYGFNTQSFY 114
>gi|303327131|ref|ZP_07357573.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
gi|302863119|gb|EFL86051.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3]
Length = 373
Score = 44.1 bits (101), Expect = 0.077, Method: Composition-based stats.
Identities = 32/356 (8%), Positives = 80/356 (22%), Gaps = 21/356 (5%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK-KILDNLVSGAT 98
V +V + V S + + + S ++ L + L L+ A
Sbjct: 30 EGVVATVNGEPVHLRSVQSLLDSRSAAL-----GTLQSSSLENMKLRYGEALGTLIIHAL 84
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q +E + + +A+ + + ++ + +
Sbjct: 85 VRQELEHRQIPVGDAALDLAVAQV-----------RGDYEPGDLSRFLADESLDEADWQA 133
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV--LTQW 216
L R + + + + R + L +
Sbjct: 134 LMRDHLAMLTFEKRVLLSGIRVGLDEVRAYYREHQADFQLPETLDLCLISGEERAALDVF 193
Query: 217 FEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV 276
+ + P + L ++ + + + + +TV +
Sbjct: 194 CAAFPAGRKTPRSDLLVQCLEVRGDEVPPPWNKDTSVLKPGACAPARRQNGSWQTVALVE 253
Query: 277 FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKG 336
D + I L +++ + GS S+ I L G
Sbjct: 254 RQKAHSLD--MADAYPLIEHILLEQKKNAAFEQWLEGSLSRAVIKVSPLLKEELLTPASG 311
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
V + P + R ++
Sbjct: 312 RQVQPNENDDEEVRTDAVDAAPGPDAASGGQAGREEKSARKSERDAARNPRQDDDA 367
>gi|218562900|ref|YP_002344679.1| putative periplasmic protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|112360606|emb|CAL35403.1| possible periplasmic protein [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|315928422|gb|EFV07735.1| surA N-terminal domain protein [Campylobacter jejuni subsp. jejuni
DFVF1099]
Length = 271
Score = 44.1 bits (101), Expect = 0.077, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 57/188 (30%), Gaps = 25/188 (13%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + F + + + + ++ V V ++ + + K
Sbjct: 4 ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTMKALKID-------------- 47
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
K L L++ ++ +G+ + + I + NK + + F +
Sbjct: 48 -----RNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLA----QNKTTLNAFKAN 98
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L + + +++ ++ K L + + + K F + N
Sbjct: 99 LKSKNQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINA 158
Query: 201 HVPAIADP 208
++ +P
Sbjct: 159 NIYLSNNP 166
>gi|300870396|ref|YP_003785267.1| hypothetical protein BP951000_0768 [Brachyspira pilosicoli 95/1000]
gi|300688095|gb|ADK30766.1| hypothetical protein BP951000_0768 [Brachyspira pilosicoli 95/1000]
Length = 241
Score = 44.1 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 22/196 (11%), Positives = 50/196 (25%), Gaps = 15/196 (7%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSST----------VVSVGRQKVPFSSFINSWKQ 62
+ K+FL ++ + S+ + S S V+ V + ++F +K
Sbjct: 3 IKKVFLSLIVLSIFFVSCSNTKTTNSSDSLAYLQGGEGEWVLKVDDFTINQTNFNKDYKV 62
Query: 63 ELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLDQFIEDIGLEADHG---RVWGE 118
L + + S + ++L++ L + E +
Sbjct: 63 FLNSMKAQGATPEQIAMIESDNRYKQNYAEDLINQILLLKKAETDKFFETEEAKSTIDAT 122
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
I K + A K + D L +
Sbjct: 123 IRNIKA-QYYYQKLIEQAASNVPAPTPEQAKAFFDQAKDQLQLAQYGITEYNTQTAPYIA 181
Query: 179 LDQAKRFYFENRSVDY 194
+ + +N +
Sbjct: 182 DIYKRVYAEQNVQREI 197
>gi|227821473|ref|YP_002825443.1| putative survival protein SurA, probable peptidyl-prolyl cis-trans
isomerase protein [Sinorhizobium fredii NGR234]
gi|227340472|gb|ACP24690.1| putative survival protein SurA, probable peptidyl-prolyl cis-trans
isomerase protein [Sinorhizobium fredii NGR234]
Length = 312
Score = 44.1 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 35/292 (11%), Positives = 66/292 (22%), Gaps = 21/292 (7%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFS---VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
KI +V + G+ + S V V + + ++
Sbjct: 3 GKISIVRALSALAVAGVLSIASGAAVQAASGVKVIVNSTVITSGDIAKRV--AFLRLQRQ 60
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN 130
G +E LV I + V AR N
Sbjct: 61 GGGAAEAE------------KQLVDEVLKRAEIARVQQSVSTQEVDAAYARFAA----GN 104
Query: 131 KFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENR 190
K S + L + G+ + + + +S VV G + +
Sbjct: 105 KLSTEQLGKILDQSGVGIEHFKQYIAVQMSWPRVVNFRYGSASRLSGGDLVKRMMEGGGN 164
Query: 191 SVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
+ V + S + + N ++ S
Sbjct: 165 KPVTTEYFLQQVIFVIPESKRGAITAKRQAEANASRSQFPGCETSKAFAANYRDVSIRSL 224
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302
+ A+ K + ++ E KK + A E
Sbjct: 225 GRVLAQQLPEDWKPLVEKAGDGTTTGTRVTEKGVEYLAICKKRQVNDDAAAE 276
>gi|120611614|ref|YP_971292.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
AAC00-1]
gi|120590078|gb|ABM33518.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acidovorax citrulli
AAC00-1]
Length = 265
Score = 44.1 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 46/131 (35%), Gaps = 2/131 (1%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGY 546
K++K E +A ++ K+G F DI K + + +
Sbjct: 136 KEYKASHILVETEDQAKSIIASI-KKGAKFEDIAKKQSKDPGSGARGGDLDWATPSSYVS 194
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ + + P++ + V ++ + + + + D+ + + Q + + L
Sbjct: 195 EFTEALVKLDKGKMTQTPVKTQFGWHVIRLDDVREAKLPKLDEVKAQIAQQLQQQKLAKF 254
Query: 607 IAYLKSQYSVT 617
L+++ V
Sbjct: 255 QEDLRAKAKVE 265
>gi|268316846|ref|YP_003290565.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
DSM 4252]
gi|262334380|gb|ACY48177.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodothermus marinus
DSM 4252]
Length = 291
Score = 44.1 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 14/83 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V VG+ + + + + + S +++++ ++ L
Sbjct: 24 DVVARVGQVYLTREELARALQ-------------LLPVQMDSTEASQQVIEQWITNQLLY 70
Query: 101 QFIEDIGLEADHGRVWGEIARSP 123
Q GL + V + +
Sbjct: 71 QEALRRGLR-NDPEVQRLLEENE 92
>gi|158425946|ref|YP_001527238.1| hypothetical protein AZC_4322 [Azorhizobium caulinodans ORS 571]
gi|158332835|dbj|BAF90320.1| hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 302
Score = 44.1 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 31/166 (18%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M R+ + + L +P L G++ + +V V Q + +
Sbjct: 1 MTSAFRRF-------LLVCALALPVLAPGVA-------LAQVLVMVSGQPITSNDVAQRM 46
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
K ++ + + K++L+ L+ +EAD V +
Sbjct: 47 KLH------QLIENKSPPQ-------KQVLEELIDEKIKVLQAARFSIEADEDDVNRMFS 93
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
G+ D + A+ G+ + + D V
Sbjct: 94 NIAERSGRTA----DQLTASFAQSGLKVQTFKDKLRADYVWGQYVR 135
>gi|153005189|ref|YP_001379514.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
gi|152028762|gb|ABS26530.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
Length = 342
Score = 44.1 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 33/111 (29%), Gaps = 4/111 (3%)
Query: 511 SKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS 570
+ G+ F + + + S F P + IE
Sbjct: 224 LRAGERFEAVAVSGDGPERARGGDLGLIGRGDGKDARLESAAFELPAVGARSPVIELTDG 283
Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQ----MMNKDLLDSVIAYLKSQYSVT 617
+ V ++ + G V ++ ++ + + D +++ L+ V
Sbjct: 284 FAVLELIERRPGRVPSFEEARGEVSNRLVPQLKRKAFDELLSRLRRDADVE 334
>gi|229017643|ref|ZP_04174536.1| Foldase protein prsA 1 [Bacillus cereus AH1273]
gi|229023860|ref|ZP_04180344.1| Foldase protein prsA 1 [Bacillus cereus AH1272]
gi|228737447|gb|EEL87958.1| Foldase protein prsA 1 [Bacillus cereus AH1272]
gi|228743649|gb|EEL93756.1| Foldase protein prsA 1 [Bacillus cereus AH1273]
Length = 276
Score = 44.1 bits (101), Expect = 0.079, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 9/148 (6%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 116 TDKDVKDNHKPEMKVSHILVKDEKTAKE-VKEKINNGEDFTTLAKQYSEDTGSKEQGGEI 174
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V PI+ Y + KVT+ K + KD L
Sbjct: 175 AGFAPGQTVKEFEEAAYKLDAGQV-SEPIKTSYGYHIIKVTDKKELKPFDEVKDTIRKDL 233
Query: 595 TQMMNKDLL----DSVIAYLKSQYSVTV 618
Q +D VI L + + V
Sbjct: 234 EQQRLQDATGKWKQQVINDLLKEADIKV 261
>gi|317008847|gb|ADU79427.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori India7]
Length = 299
Score = 44.1 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 18/222 (8%), Positives = 56/222 (25%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + R +V + + A+ + + F + + + K
Sbjct: 83 DQAIRTALVENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKVQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ ++ + +E + +S Q + + +
Sbjct: 143 FY-----DANKDQLFVKQEAHARHILVKTEDEAKRIISEIDKQPKTKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMAPDFSKAAFALTPGNYTKTPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
++ + M+ + L I L+ + ++
Sbjct: 258 VTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKIVINK 299
>gi|86357089|ref|YP_468981.1| peptidyl-prolyl cis-trans isomerase protein [Rhizobium etli CFN 42]
gi|86281191|gb|ABC90254.1| probable peptidyl-prolyl cis-trans isomerase protein [Rhizobium
etli CFN 42]
Length = 314
Score = 44.1 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 23/207 (11%), Positives = 51/207 (24%), Gaps = 27/207 (13%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++ ++ + L+ GL+ + SG V +
Sbjct: 1 MID-----AKKAITAFLAGAAIA--LLTGLAGPALAASGVQ--AVVNGTAITSGDVAKR- 50
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ A++ + L+ Q + + + V A
Sbjct: 51 -------QAFLRLQHTKADAKTAT------EQLIDETLKRQEVARVHMSVSQQDVDASFA 97
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
R NK S + L R G+ + +S VV G +
Sbjct: 98 RFSA----GNKLSVEQMSQILDRAGVGVDHFKGFIAVQMSWPRVVNARYGSTSRLSNYDL 153
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIAD 207
++ + + + +
Sbjct: 154 VSRMMQNNKQKPVTTEYMLQQIIFVIP 180
>gi|57238339|ref|YP_179467.1| hypothetical protein CJE1481 [Campylobacter jejuni RM1221]
gi|57167143|gb|AAW35922.1| conserved hypothetical protein [Campylobacter jejuni RM1221]
gi|315058774|gb|ADT73103.1| Possible periplasmic protein [Campylobacter jejuni subsp. jejuni
S3]
Length = 271
Score = 44.1 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 57/188 (30%), Gaps = 25/188 (13%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + F + + + + ++ V V ++ + + K
Sbjct: 4 ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTMKVLKID-------------- 47
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
K L L++ ++ +G+ + + I + NK + + F +
Sbjct: 48 -----RNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLA----QNKTTLNAFKAN 98
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L + + +++ ++ K L + + + K F + N
Sbjct: 99 LKSKNQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINA 158
Query: 201 HVPAIADP 208
++ +P
Sbjct: 159 NIYLSNNP 166
>gi|322379060|ref|ZP_08053463.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter suis
HS1]
gi|321148552|gb|EFX43049.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter suis
HS1]
Length = 267
Score = 44.1 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 12/145 (8%)
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKN-----FRDIGKNLGASLLTTNQINRMD-- 538
V+++ K + + A +++ E +K K F DI T N N D
Sbjct: 120 VQQEAKARHILVKTEADAKRVISELNKTPKTRIEKEFIDIANRESIDPNTKNSKNGGDLG 179
Query: 539 -NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
+ + + VF+ P++ Y V + + ++ + +
Sbjct: 180 KFQKNQMAPEFSNAVFALKPGSYTKTPVKTEFGYHVIYLMSKNEPKTPTFEQARQTIIGI 239
Query: 598 MNKDLLDSV----IAYLKSQYSVTV 618
+ + + L+ + +
Sbjct: 240 LKEHQFQEYVKGELEKLRKNVRINI 264
>gi|228919984|ref|ZP_04083338.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228839697|gb|EEM84984.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 285
Score = 44.1 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 60/151 (39%), Gaps = 11/151 (7%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V K + K ++A ++ + G +F ++ K LL+ ++ +
Sbjct: 125 TEKDVKDHYKPEIKASHILVSDENEAKEIKSKLD-AGASFEELAKQESQDLLSKDKGGDL 183
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596
+ + + + V + P+++ Y V K+T+ K ++ D+ + + +
Sbjct: 184 GYFNSGTMAPEFETAAYKLNVGQISN-PVKSSNGYHVIKLTDKK--DLKPYDEVKNSIRK 240
Query: 597 MMNKD------LLDSVIAYLKSQYSVTVHDN 621
+ ++ ++ + ++ ++D+
Sbjct: 241 NLEEERTADPVFSKKLLQEELKKANIKINDS 271
>gi|206968099|ref|ZP_03229055.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH1134]
gi|229177678|ref|ZP_04305055.1| Foldase protein prsA 2 [Bacillus cereus 172560W]
gi|206737019|gb|EDZ54166.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus AH1134]
gi|228605868|gb|EEK63312.1| Foldase protein prsA 2 [Bacillus cereus 172560W]
Length = 285
Score = 44.1 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 21/219 (9%), Positives = 73/219 (33%), Gaps = 11/219 (5%)
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ ++ K + + ++ F K + +
Sbjct: 57 YEMMAQDVITKKYKVPDEEVNKEVEKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAM 116
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ ++V K + K ++A ++ + G +F ++ K LL
Sbjct: 117 NEAIKKSITEKDVKDHYKPEIKASHILVSDENEAKEIKSKLD-AGASFEELAKQESQDLL 175
Query: 530 TTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ ++ + + + + + V + P+++ Y V K+T+ K ++ D
Sbjct: 176 SKDKGGDLGYFNSGTMAPEFETAAYKLNVGQISN-PVKSSNGYHVIKLTDKK--DLKPYD 232
Query: 589 KFISYLTQMMNKD------LLDSVIAYLKSQYSVTVHDN 621
+ + + + + ++ ++ + ++ ++D+
Sbjct: 233 EVKNSIRKNLEEERTADPVFSKKLLQEELKKANIKINDS 271
>gi|311070719|ref|YP_003975642.1| hypothetical protein BATR1942_18970 [Bacillus atrophaeus 1942]
gi|310871236|gb|ADP34711.1| hypothetical protein BATR1942_18970 [Bacillus atrophaeus 1942]
Length = 306
Score = 44.1 bits (101), Expect = 0.081, Method: Composition-based stats.
Identities = 18/192 (9%), Positives = 54/192 (28%), Gaps = 30/192 (15%)
Query: 1 MLEI--IRKASRTWVAK-IFLVVLFVPFLIWG---LSDALFSVSGSSTVVSVGRQKVPFS 54
M+E ++ ++ I + VL V ++ + ++ ++G + V
Sbjct: 1 MIEKKGLKLNLKSRTIWTIIVGVLLVSCIVVAYKLTKSQAAATQSQESIATIGDKSVTRE 60
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
++ + E G K L+++++ ++Q + L+
Sbjct: 61 DWLKKMEDEYG---------------------KATLEDMINVRVVEQLAKKNKLKVSDSD 99
Query: 115 VWGE---IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
+ E I +D + + ++ + E+
Sbjct: 100 IEREFLLIKAVNNSFYEDEHTTEKEWKDQIRYNILLEELLTKDIDISEKEMKSFYTKNKE 159
Query: 172 MRPSNLLLDQAK 183
+ +
Sbjct: 160 LYQFDDSYRIRH 171
>gi|306838742|ref|ZP_07471576.1| Chaperone surA precursor [Brucella sp. NF 2653]
gi|306406144|gb|EFM62389.1| Chaperone surA precursor [Brucella sp. NF 2653]
Length = 317
Score = 44.1 bits (101), Expect = 0.082, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 48/199 (24%), Gaps = 17/199 (8%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L + ++ F+ S V V + S +
Sbjct: 5 PLIASLLGAAVCLTALGTVAAPAFAAGESEVKVIVSGNAITNSDIKHRM----------- 53
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +S L++ + L ++ G+ V A NK
Sbjct: 54 --AFLKLQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAG----FASRNK 107
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + G+ + + + + +V + + +
Sbjct: 108 MTLAQLNQVMNQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKK 167
Query: 192 VDYIVLNNRHVPAIADPSN 210
+ + V + S
Sbjct: 168 PVATEYHLQQVIFVVPASK 186
>gi|225388228|ref|ZP_03757952.1| hypothetical protein CLOSTASPAR_01963 [Clostridium asparagiforme
DSM 15981]
gi|225045696|gb|EEG55942.1| hypothetical protein CLOSTASPAR_01963 [Clostridium asparagiforme
DSM 15981]
Length = 309
Score = 44.1 bits (101), Expect = 0.082, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 44/141 (31%), Gaps = 11/141 (7%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ E ++ ++ + V + + A +++ + EG +F I K
Sbjct: 139 VTELTQDQNLEISDAEAKVIEVLPISVRNRQT---AEEVLAQAQAEGADFSAIAKKYSTD 195
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
Q+ R N++ + F+ + + ENG Y+ + +
Sbjct: 196 GGVAVQMERNQNQS-----ELEKAAFALEQDEISGIVEENGAFYI---LKCTNAYDEAAT 247
Query: 588 DKFISYLTQMMNKDLLDSVIA 608
L Q + + A
Sbjct: 248 AARKKKLAQEKKNNAFQKIYA 268
>gi|157363381|ref|YP_001470148.1| hypothetical protein Tlet_0517 [Thermotoga lettingae TMO]
gi|157313985|gb|ABV33084.1| conserved hypothetical protein [Thermotoga lettingae TMO]
Length = 532
Score = 44.1 bits (101), Expect = 0.082, Method: Composition-based stats.
Identities = 39/414 (9%), Positives = 105/414 (25%), Gaps = 19/414 (4%)
Query: 5 IRKASRTW---VAKIFLVVLFVPFLIWGLSDALFSVSGSSTV--------VSVGRQKVPF 53
+R+ + W + I + W ++ L SS + +++ +
Sbjct: 1 MREWFKKWQKVIVWIIAISFVAGIAWWSVASYLSGRQESSKISLDQAIGYLTIAGSPIED 60
Query: 54 SS---FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
S + E G + G + +L++L+ + + + L A
Sbjct: 61 SDTWVLPSELDSEYGNLLNNYGISQLDPIFQEPSQKASLLEDLLKNKVILHYAKQNKLTA 120
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ + ++ + + + + R G L ++ V
Sbjct: 121 SNKEIEAKLNE----YRQQIEKDQSLVQYIKQRYGSVNVYLNAVLKPTLEKSLTQQKVVA 176
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
+ + + ++ + + + D S+A K A
Sbjct: 177 SVANVDSEEMKKYFEENIDQLRKKYDKVDAKLVSFTDESSANKFINILLEKGFDGAASEM 236
Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
+S + E ++ + P + L + +
Sbjct: 237 GLSVQDIPNLTRGIFDEKFEKDIFSGATNTAVG-PIPLGSSWYVLEVQSATVLTDFENFA 295
Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+ Q + + S++ I V + + K +
Sbjct: 296 LSDTYESEKNSLQSQKMQQWYENYTSEKNIELVIADEVYSTWRKVSSVSTPTEYESLRKE 355
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+ + A + + K E + + + E L + E+
Sbjct: 356 LKEKIFQDNSISPQAPDTLKSAYVVLLEKIEESLDQSDDQSSEKLKQIMAEKEM 409
>gi|86160748|ref|YP_467533.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85777259|gb|ABC84096.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 356
Score = 44.1 bits (101), Expect = 0.082, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 10/128 (7%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
S V + + ++ I + ++ K+ LDNLV
Sbjct: 25 SKKSGPAVATGNGFTITAGELKARLDEQSPFIRARY---------STLERKKEFLDNLVR 75
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
L + E GL A+ V + + + F + A + ++Y D +
Sbjct: 76 FEVLAREAERQGL-ANDPEVQLTLKKVMVQKLVQKNFQDASGAAAEALPEADLQKYYDEH 134
Query: 156 TKMLSRTD 163
R
Sbjct: 135 KAEYYRPR 142
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 10/115 (8%), Positives = 30/115 (26%), Gaps = 9/115 (7%)
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
++ T + K + + ++ Y+V
Sbjct: 194 EDAASKATAGDLGFKTREDL------EKAYSKEFADVAYNLQPGATSGVLETPNGVYLVK 247
Query: 575 ---KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ Q K + + L + D+ + L+ V++ + ++
Sbjct: 248 GTGEQDELNRTFEQVKPQIQTKLYREKKTKEFDAWLKKLRDDAKVSIDEKALEAV 302
>gi|330836446|ref|YP_004411087.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
coccoides DSM 17374]
gi|329748349|gb|AEC01705.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirochaeta
coccoides DSM 17374]
Length = 354
Score = 43.7 bits (100), Expect = 0.084, Method: Composition-based stats.
Identities = 11/172 (6%), Positives = 38/172 (22%), Gaps = 14/172 (8%)
Query: 40 SSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
S V + K+ + ++ ++L+ +++
Sbjct: 29 SQPAAVVNLTKNTVITTEQLNAKVKEYQEAAATAGTAAPDAL---------RVLEIMIND 79
Query: 97 ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDN--KFSHDVFVSRLAREGINEKEYIDH 154
+ Q G+ +V + + + F + + + + +
Sbjct: 80 ELVMQGSARDGIVITDAQVSQLVVDQKQTLEQQYGVTLTDAQFQQAVTAQFGSMEAFRKA 139
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
+ L V + + F + +
Sbjct: 140 LKEQLLVDTYVRKAKSDVIAQVKQPTDTEISSFFRQRRSEFFSPESIRLSHV 191
>gi|89897067|ref|YP_520554.1| hypothetical protein DSY4321 [Desulfitobacterium hafniense Y51]
gi|89336515|dbj|BAE86110.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 266
Score = 43.7 bits (100), Expect = 0.084, Method: Composition-based stats.
Identities = 26/257 (10%), Positives = 58/257 (22%), Gaps = 39/257 (15%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ----------- 62
K+ +F LS + V + + + + +
Sbjct: 1 MKLIRAGVFFLMAALILSGCASQNYPENVVAVINGETITQEEIDEAINEGKLHIDLTEAL 60
Query: 63 ----------ELGMISQKIG---FVVNSERARSVGLDKK----------ILDNLVSGATL 99
+ + Q G + S + R ++ L++L+ L
Sbjct: 61 RLLNGENSMSQRDAMLQAFGVDEGNMTSGQKRFFEGIERSSAKIPTANDALNSLLVEEVL 120
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR-----LAREGINEKEYIDH 154
Q G EA RV + S + + + ++ +
Sbjct: 121 YQEAVKQGHEASIDRVKQILEESKRINLEAMSQDEEALREYNEYVEKTASIYHQYGFTSE 180
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLT 214
+ R D + + S N S A +
Sbjct: 181 EDYLSKRMDRTAQAMAINTMNYEFDKVMADKLPGVDSAQIERGNAWEDYGEYLLSKAKVK 240
Query: 215 QWFEKYKDNYRAPEYKR 231
+Y+ + +
Sbjct: 241 ILKPEYQIQHYGESWSH 257
>gi|17987548|ref|NP_540182.1| survival protein surA precursor (peptidyl-prolyl cis-trans
isomerase surA) [Brucella melitensis bv. 1 str. 16M]
gi|265990795|ref|ZP_06103352.1| SurA domain-containing protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|17983251|gb|AAL52446.1| survival protein sura precursor (peptidyl-prolyl cis-trans
isomerase sura) [Brucella melitensis bv. 1 str. 16M]
gi|263001579|gb|EEZ14154.1| SurA domain-containing protein [Brucella melitensis bv. 1 str.
Rev.1]
Length = 317
Score = 43.7 bits (100), Expect = 0.085, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 49/199 (24%), Gaps = 17/199 (8%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L + ++ F+ S V V + S +
Sbjct: 5 PLIASMLGAAVCLTALGTVAAPAFAAGESEVKVIVSGNAITNSDIKHRM----------- 53
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +S L++ + L ++ +G+ V A NK
Sbjct: 54 --AFLKLQRKSGNLNQLARNELTEEMLKRIEMKSLGINISDKEVNDAYAG----FASRNK 107
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + G+ + + + + +V + + +
Sbjct: 108 MTLAQLNQVMNQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKK 167
Query: 192 VDYIVLNNRHVPAIADPSN 210
+ + V + S
Sbjct: 168 PVATEYHLQQVIFVVPASK 186
>gi|281357480|ref|ZP_06243968.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis
ATCC BAA-548]
gi|281316083|gb|EFB00109.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Victivallis vadensis
ATCC BAA-548]
Length = 361
Score = 43.7 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 40/353 (11%), Positives = 95/353 (26%), Gaps = 59/353 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSV-GLDKKILDNLVSGATL 99
V +G +K+ + ++Q V S A + ++ V L
Sbjct: 52 DVVAQIGDKKITKQEVLKPL------LAQMPDGKVPSMMADQLDNAAPGVIKWFVDQQIL 105
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ G + + K K + F L + ++Y +
Sbjct: 106 EAAAAKAGFKPSKEHAQKAV---KAQWEKVGKEDRERFAQMLQIQNKTVEQYQEEMVSNP 162
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ + + A + A + +++++
Sbjct: 163 EIQKQIA----------------------------LDEFLKTKIAEPTVTEAEMRKYYDE 194
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPN 279
K + R + + +A ++
Sbjct: 195 NKQKEFSTPADRPGTFRASHILIMVDDKADDAAKKAALDQ-------------------I 235
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFT 339
+ E + + + + SL SFS + + ++ K+G+ +
Sbjct: 236 NAISAELKKDPARFEALAREKSGCPSKAKGGSLDSFSDKEMV-PEFQKALE-GLKEGEIS 293
Query: 340 PVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
+ FGY I ++ SF VK+ + N ++ K + + +LE
Sbjct: 294 APVKTQFGYHIIRRDKLQSEKVESFDNVKETVGNILKRQKQMQAFTDYMAQLE 346
Score = 41.0 bits (93), Expect = 0.65, Method: Composition-based stats.
Identities = 21/257 (8%), Positives = 67/257 (26%), Gaps = 9/257 (3%)
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGK 428
K +Q + A+ K + A+ +++ + ++ + + + +
Sbjct: 97 KWFVDQQILEAAAAKAGFKPSKEHAQKAVKAQWEKVGKEDRERFAQMLQIQNKTVEQYQE 156
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
E+ + P ++ + +++ Y ++ +
Sbjct: 157 EMVSNPEIQKQIALDEFLKTKIAEPTVTEAEMRKYYDENKQKEFSTPADRPGTFRASHIL 216
Query: 489 DW----KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF 544
+ + N + E K+ F + + + +K
Sbjct: 217 IMVDDKADDAAKKAALDQINAISAELKKDPARFEALAREKSGCPSKAKGGSLDSFSDKEM 276
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY----LTQMMNK 600
+ + + P++ Y + + + V+ D L +
Sbjct: 277 VPEFQKALEGLKEGEI-SAPVKTQFGYHIIRRDKLQSEKVESFDNVKETVGNILKRQKQM 335
Query: 601 DLLDSVIAYLKSQYSVT 617
+A L+ V
Sbjct: 336 QAFTDYMAQLEKDSGVK 352
>gi|254718820|ref|ZP_05180631.1| Chaperone surA precursor [Brucella sp. 83/13]
gi|265983805|ref|ZP_06096540.1| SurA domain-containing protein [Brucella sp. 83/13]
gi|264662397|gb|EEZ32658.1| SurA domain-containing protein [Brucella sp. 83/13]
Length = 318
Score = 43.7 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 48/199 (24%), Gaps = 17/199 (8%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L + ++ F+ S V V + S +
Sbjct: 6 PLIASLLGAAVCLTALGTVAAPAFAAGESEVKVIVSGNAITNSDIKHRM----------- 54
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +S L++ + L ++ G+ V A NK
Sbjct: 55 --AFLKLQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAG----FASRNK 108
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + G+ + + + + +V + + +
Sbjct: 109 MTLAQLNQVMNQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKK 168
Query: 192 VDYIVLNNRHVPAIADPSN 210
+ + V + S
Sbjct: 169 PVATEYHLQQVIFVVPASK 187
>gi|255690565|ref|ZP_05414240.1| peptidyl-prolyl cis-trans isomerase [Bacteroides finegoldii DSM
17565]
gi|260624026|gb|EEX46897.1| peptidyl-prolyl cis-trans isomerase [Bacteroides finegoldii DSM
17565]
Length = 515
Score = 43.7 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 47/453 (10%), Positives = 104/453 (22%), Gaps = 30/453 (6%)
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ ++ + ++ +++ + V + S + + I
Sbjct: 84 FRKQQEENRIKLMEDCLVDKQTVDSCVRVSYQKMALKARTGQVQVMQIFKYLPQTITSRH 143
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
E+EK S + Q + + F+++ ++
Sbjct: 144 LEEEKARMDSIYQAIRNQPGLDFSALVKCYSDDRQNRWIGGLQTTVEFENIAFALSKGEI 203
Query: 300 AEEQGKSLSDISLGSFSKEYIP------DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
+E L ++ +P D + + + VI
Sbjct: 204 SEPFFTPAGIHILKVMDRKELPVYEDVVDGIVQRILHKEIRNQGIGKVIERLKREWRYTP 263
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ I + E + ++
Sbjct: 264 NQTGIE---ELLTKGDTERTLFAIDGQEYTGGRFKQFAASHPMTVKRQLEEFVAKSLLDY 320
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ +D K A E L + + + +Y +
Sbjct: 321 ESKKLD---KKYPEARYALQKADEDYLIKEMTRQKVELPAMNDRVGLATYFKFHSSDYQW 377
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
R V K A+ +L + + R GA + Q
Sbjct: 378 DNPRYKG-----VVLHCADKKIAKRAKKMLKKLPAD--EWMDKLRQTFNTSGAEKIQIEQ 430
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
D ENK+ K E LSY V K + + I
Sbjct: 431 GTFADGENKYVNKLV-----------FKSGDFEPLLSYPFTIVVGKKQKGPDDYREVIDR 479
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + L L+ V ++ +++
Sbjct: 480 VRKDYRTYLDTCWTRELRESGKVEINQEVLKTV 512
>gi|241258746|ref|YP_002978630.1| hypothetical protein Rleg_6124 [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240863216|gb|ACS60879.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 294
Score = 43.7 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 24/210 (11%), Positives = 68/210 (32%), Gaps = 9/210 (4%)
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
I + G+ + + + + F + + + +Y ++
Sbjct: 75 IKEEIFYREGQKMGLAQDDTVFRRRMQQKMEFLLEPSVEELAPKPGELEAYFTAHAQDYR 134
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN 532
++ +++ +T ++ A ++ + + + + L
Sbjct: 135 LPEKLAFRQI------FFRSERTGDKGDLSATAVLSKLKSDAASIDMTSLGDSSLLPERT 188
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFIS 592
++ + FG D +S++ S P +++VF P+ D +
Sbjct: 189 ALSDAELIATSFGQDFVSELASAPENRWYGPIRSAYGAHLVFVSERLMSHPLALSDAGTA 248
Query: 593 YLT---QMMNKDLLDSVIAYLKSQYSVTVH 619
L KD+ D+ A +K +Y + ++
Sbjct: 249 VLADWESARRKDIADAHYAAMKKRYDIEIN 278
>gi|78776717|ref|YP_393032.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
denitrificans DSM 1251]
gi|78497257|gb|ABB43797.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Sulfurimonas
denitrificans DSM 1251]
Length = 277
Score = 43.7 bits (100), Expect = 0.086, Method: Composition-based stats.
Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 12/94 (12%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ T+VSV ++ ++ G + K++L+ LV+
Sbjct: 20 SAQTLVSVNGTEITQQDVDKEL------MAATQGRFNQVPAEKQAEFRKQVLEQLVAKEL 73
Query: 99 LDQFIEDIGLEADH------GRVWGEIARSPLFH 126
+ + G+ V I +
Sbjct: 74 VYDDAKKTGVLTSPEYKEKYEEVTQRIQKEIAIQ 107
>gi|292493646|ref|YP_003529085.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
halophilus Nc4]
gi|291582241|gb|ADE16698.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Nitrosococcus
halophilus Nc4]
Length = 308
Score = 43.7 bits (100), Expect = 0.087, Method: Composition-based stats.
Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 7/101 (6%)
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
I R F+ P+E + K+ K ++
Sbjct: 205 PGWIKRDGR----LVKPFEDAAFALTKPGDISKPVETPFGVHLIKLLEVKPSRQLSFEEV 260
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQY---SVTVHDNLIQRYLD 628
L + + ++ S + +SQ ++ ++++ ++
Sbjct: 261 KGKLMRQVRAEVRASAMEQKRSQSYPDPRKINYEVLEQVVN 301
>gi|289432892|ref|YP_003462765.1| protein export protein [Dehalococcoides sp. GT]
gi|288946612|gb|ADC74309.1| protein export protein, putative [Dehalococcoides sp. GT]
Length = 422
Score = 43.7 bits (100), Expect = 0.089, Method: Composition-based stats.
Identities = 41/410 (10%), Positives = 114/410 (27%), Gaps = 28/410 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGS-----STVVSVGRQKVPFSSF 56
E RK R A L V+ + + G+ +TV++VG K + F
Sbjct: 21 FEAQRKRQRIIFATG-LSVIGIVLALVGIGVYKGWYVDQYKPMHTTVLTVGDTKYNVAYF 79
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+++ + G SQ + + + + + + ++G +
Sbjct: 80 VDALRHFTGGDSQ-----------YAYYFIDAVSERIQLNQLMVEKASEMGYTISDDEID 128
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
I +++ + + +K +++ + +T + + S
Sbjct: 129 AAIE-------ENSLTDVPAVRDIVRASLLTDKLKTEYFDPQVPQTAEQREALAMLLESE 181
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ S ++ + + Y + ++ +
Sbjct: 182 NAASDVLAGIITDEEFAAKAAELSLESNTKTDSGSIGFKPADTITSLYGSEILEKYIFST 241
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ + + + E+ E ++ P+++ A E L G+ +
Sbjct: 242 EGYDYALVQDADVSKQRAYWLMEVLERKTDSEQIHTLGMLLPSEQVALEVKARLAAGESW 301
Query: 297 IQLAEEQGK----SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
LA E + + + + +P+ + + I Y
Sbjct: 302 GDLAVEFSQLANVEENQGDMDWITFSSVPENVADIIFATDVELNTVLDPIQDDTNYTRGG 361
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
++ +++ +D + K + + L S +
Sbjct: 362 CWIVRLKSIDENRQLSEDDRKLLISDKLDQWTADLKAANLNKLTNTFSDE 411
>gi|171059049|ref|YP_001791398.1| peptidyl-prolyl cis-trans isomerase [Leptothrix cholodnii SP-6]
gi|170776494|gb|ACB34633.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Leptothrix
cholodnii SP-6]
Length = 299
Score = 43.7 bits (100), Expect = 0.089, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 45/150 (30%), Gaps = 3/150 (2%)
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
+ I A + + + + E A V + K+ ++ K L A+
Sbjct: 132 DDEIAAYYKDKPALFAQRRVYTLHEFSIEAAGDAAKN-VTALVQAAKSSDELSKQLTAAS 190
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + + I ++ S P NG+S V + ++
Sbjct: 191 VKFAS-RVVTQPAENLPLAMIDRIGSLAEGQSLAIPSANGISAVFVAAAKPQPVTAEQAK 249
Query: 589 -KFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+L + L+ + L+ ++
Sbjct: 250 PAIEQFLLNDRKRKLVADEMKRLRGSAKIS 279
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ V ++++ +++ + E+A + K +L+ L+
Sbjct: 38 GATQVAAKVNKEEISVHQINFVLQRQ---------PGLKPEQAPAAT--KAVLEGLIDQE 86
Query: 98 TLDQFIEDIGLEADHGRV 115
Q ++ ++ D V
Sbjct: 87 LAIQEAQEQKIDRDPKVV 104
>gi|47097568|ref|ZP_00235100.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
gi|224498964|ref|ZP_03667313.1| hypothetical protein LmonF1_04383 [Listeria monocytogenes Finland
1988]
gi|254826892|ref|ZP_05231579.1| export protein [Listeria monocytogenes FSL N3-165]
gi|254831344|ref|ZP_05235999.1| hypothetical protein Lmon1_08297 [Listeria monocytogenes 10403S]
gi|254899079|ref|ZP_05259003.1| hypothetical protein LmonJ_04684 [Listeria monocytogenes J0161]
gi|254912780|ref|ZP_05262792.1| protein export protein [Listeria monocytogenes J2818]
gi|254937107|ref|ZP_05268804.1| export protein [Listeria monocytogenes F6900]
gi|255025820|ref|ZP_05297806.1| hypothetical protein LmonocytFSL_04835 [Listeria monocytogenes FSL
J2-003]
gi|284802666|ref|YP_003414531.1| hypothetical protein LM5578_2422 [Listeria monocytogenes 08-5578]
gi|284995808|ref|YP_003417576.1| hypothetical protein LM5923_2373 [Listeria monocytogenes 08-5923]
gi|47014054|gb|EAL05055.1| protein export protein [Listeria monocytogenes str. 1/2a F6854]
gi|258599272|gb|EEW12597.1| export protein [Listeria monocytogenes FSL N3-165]
gi|258609709|gb|EEW22317.1| export protein [Listeria monocytogenes F6900]
gi|284058228|gb|ADB69169.1| hypothetical protein LM5578_2422 [Listeria monocytogenes 08-5578]
gi|284061275|gb|ADB72214.1| hypothetical protein LM5923_2373 [Listeria monocytogenes 08-5923]
gi|293590774|gb|EFF99108.1| protein export protein [Listeria monocytogenes J2818]
Length = 293
Score = 43.7 bits (100), Expect = 0.089, Method: Composition-based stats.
Identities = 30/231 (12%), Positives = 68/231 (29%), Gaps = 2/231 (0%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K E ++ I + +DV K V
Sbjct: 34 DVTKDELYDAMKDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLA 93
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ K L + + + D+ L++ + D +KA +
Sbjct: 94 QSGLTEKSFKSQLKYNLLVQKATEANTDTSDKTLKKYYETWQPDITVSHILVADENKAKE 153
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
V + K+G+ F D+ K T + ++ ++ + P
Sbjct: 154 -VEQKLKDGEKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAP 212
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + ++ EKDK + + ++ +++ LK +Y
Sbjct: 213 VKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263
>gi|218896199|ref|YP_002444610.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus G9842]
gi|228964209|ref|ZP_04125331.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar sotto str.
T04001]
gi|218545279|gb|ACK97673.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus G9842]
gi|228795460|gb|EEM42945.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar sotto str.
T04001]
Length = 285
Score = 43.7 bits (100), Expect = 0.090, Method: Composition-based stats.
Identities = 30/264 (11%), Positives = 92/264 (34%), Gaps = 20/264 (7%)
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
K + A T ++ + K+L++ + +++ + + +
Sbjct: 21 CGQKNESATVATATDSTVTKDDFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDEEVNKEV 80
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
K K+ +K+ L ++ L + I E ++V
Sbjct: 81 EKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAMNEAIKKSITE---------KDVKD 131
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
K + K ++A ++ + G +F ++ K LL+ ++ + +
Sbjct: 132 HYKPEIKASHILVSDENEAKEIKSKLD-AGASFEELAKQESQDLLSKDKGGDLGYFNSGT 190
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD-- 601
+ + + V + P+++ Y V K+T+ K ++ D+ + + + + ++
Sbjct: 191 MAPEFETAAYKLNVGQISN-PVKSSNGYHVIKLTDKK--DLKPYDEVKNSIRKNLEEERT 247
Query: 602 ----LLDSVIAYLKSQYSVTVHDN 621
++ + ++ ++D+
Sbjct: 248 ADPVFSKKLLQEELKKANIKINDS 271
>gi|284035739|ref|YP_003385669.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
DSM 74]
gi|283815032|gb|ADB36870.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Spirosoma linguale
DSM 74]
Length = 797
Score = 43.7 bits (100), Expect = 0.091, Method: Composition-based stats.
Identities = 39/378 (10%), Positives = 103/378 (27%), Gaps = 10/378 (2%)
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFS 316
++F+ + + P A + K +A ++ +
Sbjct: 422 QPYTVNQFFAYVRQRQQPQRNPALTLASGSPAMEKTLGGSSAIAMQRLFDRFIGDQLIAT 481
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+E D + L + D + V F++ K R
Sbjct: 482 EEMNLDKKSPEFRALLTEIRDGVLLSQVMEQNVWERSMVDSTGQRQYFEQHKDKYRFPER 541
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI--- 433
+ D + L + RR + ++ +
Sbjct: 542 ARATLVVAQNDSLLKQAVSMLSSRPPYQLRRSAAPVTFTKNQTALSETLRESLFDVLVVM 601
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP---ARDRKLEEVLTDVKKDW 490
+ V G D D A S + K IP ++ + V K+
Sbjct: 602 NTNPDYVVEVSGSHDATEADSVSAGRIRSVVGYLQKNGIPLSRIMEKDFQGVRPGAVKEA 661
Query: 491 KTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL-LTTNQINRMDNENKFFGYDGI 549
+ + + S+ + + + + + ++ G + T+ + + +
Sbjct: 662 QRNVSFQYFSNAKDDIARVLNSKYSATTNPARSEGLARPSETSPVTILTGLFARGENSLL 721
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ +S ++ ++ + + D+ + L +A
Sbjct: 722 DGISQWKPGTTTLHRDNKAISVLIERI---EPARAKTFDEARGAVINEYQATLEKQWLAQ 778
Query: 610 LKSQYSVTVHDNLIQRYL 627
L+ Y V V+++ +++ +
Sbjct: 779 LRQTYPVKVNEDQLRKLV 796
>gi|224536048|ref|ZP_03676587.1| hypothetical protein BACCELL_00912 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522331|gb|EEF91436.1| hypothetical protein BACCELL_00912 [Bacteroides cellulosilyticus
DSM 14838]
Length = 513
Score = 43.7 bits (100), Expect = 0.092, Method: Composition-based stats.
Identities = 49/402 (12%), Positives = 107/402 (26%), Gaps = 42/402 (10%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
+A + + ++ + D + +L+ G+
Sbjct: 122 RAGQIRVSHIFKFLPQTVTSHVLRSAEARMDSLYAALQNGQADFDECVRNFSDEKKSF-- 179
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
S +P + + K+G+ + G I K + F++VK +I
Sbjct: 180 WVSWLQMPVE--FEDVVFALKQGEISRPFFTPQGIHIVKAIERKE--ILPFEKVKDEIMR 235
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP-LVDFAGKDVKGKEVAA 432
+ ++ E + T+ L G++ GK AA
Sbjct: 236 RQSRRYGMDRGTEALVEKLKKEYQYTADKTGVDELLSKGQTDKRLFTLDGREYTGKMFAA 295
Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT-DVKKDWK 491
+ K + ++++ P ++E + +
Sbjct: 296 FAASHPQGVQRQLKGFIMKSVLDYEYS-------RLEDKYPEFRMLMQEYRNGMLLFEIS 348
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG------ 545
+ E V S L + K ++ +L T KF
Sbjct: 349 NREIWERVPSDEVGLAAYFEKHHSDYHWKVPRYKGIVLHTTTKKLGKQARKFLKSLPEEE 408
Query: 546 -YDGISQVFSGPVEMVKCFPI---ENGLSYV---VFKVTNSKV--------------GPV 584
+ I F+ V+ +YV +FK ++
Sbjct: 409 WQNAIRLTFNAKTRQVQAEQGLFAPGDNAYVDEEIFKKGKTEPMTSFPFTTFLGEKVKGP 468
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + L L + IA L+S V ++ +++
Sbjct: 469 ETYQEVRGLLVGDYQNYLEERWIAQLRSTAKVEINQEVLKTV 510
>gi|323137132|ref|ZP_08072211.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
ATCC 49242]
gi|322397490|gb|EFY00013.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Methylocystis sp.
ATCC 49242]
Length = 297
Score = 43.7 bits (100), Expect = 0.094, Method: Composition-based stats.
Identities = 9/117 (7%), Positives = 33/117 (28%), Gaps = 2/117 (1%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
+ + L K G++F + + N + + +
Sbjct: 155 EEDAKKALARVKGGEDFAKVVAEVSKDSGPKNG-DLGWFTKDRMVPEFADAAAKLEPGQI 213
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P++ + + K+ + D+ + + + + ++ L+ +
Sbjct: 214 -SDPVKTQFGWHIIKLDEKRPKAFPPLDQVKDQVARYVVQKAQSDLVVKLREAAKIE 269
>gi|312597426|pdb|3NRK|A Chain A, The Crystal Structure Of The Leptospiral Hypothetical
Protein Lic12922
Length = 325
Score = 43.7 bits (100), Expect = 0.096, Method: Composition-based stats.
Identities = 21/185 (11%), Positives = 59/185 (31%), Gaps = 8/185 (4%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
G + A F+ S + + +VG + ++ ++ + + +
Sbjct: 2 AGSAAAPFTESLNRVIATVGTVSISELDLDDATEKY-NRLQKHLKH-----EDYRKSFRT 55
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGIN 147
+I+D L+ A +D E+ ++ + RV EI + G N+ + G+
Sbjct: 56 RIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNR--KQFEKTMETSSGMP 113
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ ++ + + ++ + + P+ + + + P
Sbjct: 114 FELWVTELPYQIKKGQLLQLKIAVPPPNEQEIRSWYNQNKDKVGFEIRYRIISIAPENDS 173
Query: 208 PSNAV 212
Sbjct: 174 IQEEN 178
>gi|256044377|ref|ZP_05447281.1| survival protein surA precursor (peptidyl-prolyl cis-trans
isomerase surA) [Brucella melitensis bv. 1 str. Rev.1]
gi|260563729|ref|ZP_05834215.1| SurA domain-containing protein [Brucella melitensis bv. 1 str. 16M]
gi|260153745|gb|EEW88837.1| SurA domain-containing protein [Brucella melitensis bv. 1 str. 16M]
Length = 318
Score = 43.7 bits (100), Expect = 0.096, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 49/199 (24%), Gaps = 17/199 (8%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L + ++ F+ S V V + S +
Sbjct: 6 PLIASMLGAAVCLTALGTVAAPAFAAGESEVKVIVSGNAITNSDIKHRM----------- 54
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +S L++ + L ++ +G+ V A NK
Sbjct: 55 --AFLKLQRKSGNLNQLARNELTEEMLKRIEMKSLGINISDKEVNDAYAG----FASRNK 108
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + G+ + + + + +V + + +
Sbjct: 109 MTLAQLNQVMNQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKK 168
Query: 192 VDYIVLNNRHVPAIADPSN 210
+ + V + S
Sbjct: 169 PVATEYHLQQVIFVVPASK 187
>gi|289810450|ref|ZP_06541079.1| peptidyl-prolyl cis-trans isomerase (rotamase D) [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 52
Score = 43.7 bits (100), Expect = 0.096, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
++ L+ A LDQ+ ++ L +V I +P F D KF ++ + + +
Sbjct: 1 MNRLIDEALLDQYSRELKLGISDEQVKQAIFATPAFQV-DGKFDNNRYNAIVN 52
>gi|212690534|ref|ZP_03298662.1| hypothetical protein BACDOR_00016 [Bacteroides dorei DSM 17855]
gi|237708010|ref|ZP_04538491.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
gi|212666883|gb|EEB27455.1| hypothetical protein BACDOR_00016 [Bacteroides dorei DSM 17855]
gi|229457996|gb|EEO63717.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
Length = 446
Score = 43.7 bits (100), Expect = 0.096, Method: Composition-based stats.
Identities = 36/482 (7%), Positives = 116/482 (24%), Gaps = 63/482 (13%)
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ +G ++ + ++ +I + A +
Sbjct: 16 FAFKMRAQGEVVLSIGGEPVKRTEFEYYFRKSHKHTPDSFLSSFINYKLKVHYAHDTGID 75
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
+ + + + + + ++ + ++ +
Sbjct: 76 TLSAFRRQMAWYRGKLLKKYLVDAEKEEQTVRQLYLRSEQRLQTNDWIRIAHISKYLPQN 135
Query: 271 TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIF 330
Q ++ D + +L+ G F LA + ++G + ++ + I
Sbjct: 136 VGRQDELRVLQQMDSVYAALQGGADFSALACRYSDDTTCKNMGGLLPWMPVNKNMQEWID 195
Query: 331 S--LAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
+K + + G I + KP + E+ +E
Sbjct: 196 KLASLEKNKISAPFYSPMGIHIIKWIDRKPGI-------------------SFEEKREQL 236
Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
E T + + + + ++ + + + LL +
Sbjct: 237 LNYLEKNGNRTWQELSAGQRERLAFQVQEL-----------------HDGLLAACLSQKY 279
Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQ 505
+ + V + + S+
Sbjct: 280 QSGDGTWQESDLEHFFKQHKSDYSWDLPHYRGAVIHCKDKKMASAIKKQLKRKPVSQWED 339
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFF-GYDGISQVFSGPVEMVKCFP 564
++ + + + T I+++ + F + VF ++ K
Sbjct: 340 VLHRLIGNASFPKARIETGVFQIGTNRYIDKLVFKCGDFQPDPALPYVFVMGKKLKKG-- 397
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
+ + + + D+ + LK +Y V ++ +++
Sbjct: 398 -------------------PESYEDVKDAVIKDYQAVYQDAWLKDLKRKYKVEINQEVLK 438
Query: 625 RY 626
Sbjct: 439 TV 440
>gi|317013595|gb|ADU81031.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
Gambia94/24]
Length = 299
Score = 43.7 bits (100), Expect = 0.097, Method: Composition-based stats.
Identities = 20/255 (7%), Positives = 60/255 (23%), Gaps = 14/255 (5%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
M + + K E+ + ++ + + L ++ +
Sbjct: 55 KSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTPEFKAMMEAVK 114
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
A+ F + + + K + + +E
Sbjct: 115 KQALVE-----FWAKKQAEEVKKVQIPEKEMQDFYNANKDQ-----LFVKQEAHARHILV 164
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +S Q + + + S N + + D
Sbjct: 165 KTEDEAKRIISEIDKQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFS 224
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----S 605
F+ P++ Y + + + ++ + M+ + L
Sbjct: 225 KAAFALTPGNYTKTPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQ 284
Query: 606 VIAYLKSQYSVTVHD 620
I L+ + ++
Sbjct: 285 RIEELRKHAKIVINK 299
>gi|297181233|gb|ADI17427.1| parvulin-like peptidyl-prolyl isomerase [uncultured
Rhodospirillales bacterium HF0070_31K06]
Length = 293
Score = 43.7 bits (100), Expect = 0.097, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 32/115 (27%), Gaps = 17/115 (14%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVS------GSSTVVSVGRQKVPFSSFINSWKQELGM 66
+ + V+ + L + S V +V +++ + +++
Sbjct: 2 LLRALPAVIVASAAFILSTGHLAAQSVRDRLAKDVVVATVNGEQILSGHLLQAFQNLPRK 61
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
Q+ V E +L+ L+ L + L V +
Sbjct: 62 HRQRGLRAVYGE----------LLEQLIENRLLTYHGRENNLS-GDAEVKALVKE 105
>gi|16804258|ref|NP_465743.1| hypothetical protein lmo2219 [Listeria monocytogenes EGD-e]
gi|224500981|ref|ZP_03669288.1| hypothetical protein LmonFR_00430 [Listeria monocytogenes FSL
R2-561]
gi|46396978|sp|Q8Y557|PRSA2_LISMO RecName: Full=Foldase protein prsA 2; Flags: Precursor
gi|16411689|emb|CAD00297.1| lmo2219 [Listeria monocytogenes EGD-e]
Length = 293
Score = 43.7 bits (100), Expect = 0.097, Method: Composition-based stats.
Identities = 30/231 (12%), Positives = 68/231 (29%), Gaps = 2/231 (0%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K E ++ I + +DV K V
Sbjct: 34 DVTKDELYDAMKDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLT 93
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ K L + + + D+ L++ + D +KA +
Sbjct: 94 QSGLTEKSFKSQLKYNLLVQKATEANTDTSDKTLKKYYETWQPDITVSHILVADENKAKE 153
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
V + K+G+ F D+ K T + ++ ++ + P
Sbjct: 154 -VEQKLKDGEKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAP 212
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + ++ EKDK + + ++ +++ LK +Y
Sbjct: 213 VKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263
>gi|303239171|ref|ZP_07325700.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
cellulolyticus CD2]
gi|302593216|gb|EFL62935.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Acetivibrio
cellulolyticus CD2]
Length = 353
Score = 43.7 bits (100), Expect = 0.098, Method: Composition-based stats.
Identities = 22/227 (9%), Positives = 54/227 (23%), Gaps = 18/227 (7%)
Query: 15 KIFLVVLFVPFLIWGLSD-----ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
K+ L + + + + V +VG +K+ + F E+
Sbjct: 5 KVITFALSASLVFSLSACNKSVKLSNGKNSTDIVGTVGDEKITATEFKFYATMEINQKES 64
Query: 70 KIGFVVNSERAR-------------SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ G S+ + + L+NL L + ++ +
Sbjct: 65 QAGIADKSKDEKKKYWETKEGDVDRKQTVIDNTLNNLTELKVLLMSAKKDNVKLEQTDFD 124
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
F + K + + + + + +
Sbjct: 125 DANKMIDQFVQNEAKGDKNEAEKVMMEKYGVSIDQYKLMYQDYMLAYNKYASSQPAKIEI 184
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
D F + + + + V +N L + K
Sbjct: 185 NDSDVKSEFEKNKEQYNKVTVKHVLVLTNDSTTNEPLPEDKVAEKKK 231
>gi|260433485|ref|ZP_05787456.1| ppic-type ppiase domain protein [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417313|gb|EEX10572.1| ppic-type ppiase domain protein [Silicibacter lacuscaerulensis
ITI-1157]
Length = 417
Score = 43.7 bits (100), Expect = 0.098, Method: Composition-based stats.
Identities = 26/227 (11%), Positives = 58/227 (25%), Gaps = 20/227 (8%)
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA------ 457
+ + VD A L + + P +
Sbjct: 194 QAEALAEEIAQVKSVDAFSAAATQYSAAPTRENGGRLDWLNITNLPPVLQPIILGLKTGE 253
Query: 458 -----LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
+ Q++ D + + E +A L +
Sbjct: 254 VTDPLTLPNAVALFQLRGLREVATGTPRYSKIDYAAYYLPGGLSPETQRRAADLKEKVDT 313
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
+ I K + ++R+D D ++ V N +
Sbjct: 314 C-DDLYGIAKGQPPEV-----LDRVDASPSEIPRDIALELAKLDPNEVSTTLTRNNGQTL 367
Query: 573 VFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
VF + +G ++ + LTQ + DS++ L++ ++
Sbjct: 368 VFLMLCGRTRDLGENTSREDVANALTQQRLQAFADSLLEQLRADAAI 414
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 42/132 (31%), Gaps = 17/132 (12%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
S + V + V + + +G +SE ++ L+
Sbjct: 42 SPAIRVNQDIVTWYELEQ-----RQRFLELLGIPGSSEA--------EVRKALIDERLRK 88
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q + + G+++ V I + S + F++ L+ G+ + D+ L+
Sbjct: 89 QAMREAGIQSAPEDVQLAIDEFAA----RGQLSPEEFLAALSDAGVAPETVRDYVASQLA 144
Query: 161 RTDVVGMFVGGM 172
D V
Sbjct: 145 WRDYVSARFISQ 156
>gi|16272406|ref|NP_438619.1| stationary-phase survival protein SurA [Haemophilus influenzae Rd
KW20]
gi|260580479|ref|ZP_05848307.1| stationary-phase survival protein SurA [Haemophilus influenzae
RdAW]
gi|1174486|sp|P44721|SURA_HAEIN RecName: Full=Chaperone surA homolog; Flags: Precursor
gi|1573432|gb|AAC22116.1| stationary phase survival protein SurA, putative [Haemophilus
influenzae Rd KW20]
gi|260092821|gb|EEW76756.1| stationary-phase survival protein SurA [Haemophilus influenzae
RdAW]
Length = 313
Score = 43.7 bits (100), Expect = 0.098, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 187 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSK 246
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 247 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 305
Query: 614 YSVT 617
++
Sbjct: 306 ANIQ 309
Score = 37.1 bits (83), Expect = 8.4, Method: Composition-based stats.
Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 27/150 (18%)
Query: 24 PFLIWGLSDALFSVSGS---STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
FL+ L F+ V +V V S +G +
Sbjct: 10 SFLLATLGCVAFTSMAQAEERVVATVDGIPVLESQV-----------RANMGKKGD---- 54
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ +D ++ + + +++ G++ D + + + +G ++ F+
Sbjct: 55 -----RQSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNG----LTYGQFLDA 105
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
L +GI+ + + V +
Sbjct: 106 LDYQGISLNTFRQQIANQMVMGAVRNKAIQ 135
>gi|304315629|ref|YP_003850774.1| hypothetical protein Tthe_0101 [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777131|gb|ADL67690.1| conserved hypothetical protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 241
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 18/176 (10%), Positives = 41/176 (23%), Gaps = 12/176 (6%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ V + S F L A +D IL+ LV
Sbjct: 62 DKGDIIAKVNNIPIYKSEFELRKGLTLA------------SDAEISNIDNYILNKLVREK 109
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ L+ + I + + + + A +E+ + +
Sbjct: 110 VEEHLASSYNLKVSQDEINLYIEKEKKEFADYPEANQMLQEMISASGMTSEEYWNTYEKY 169
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
+ R + + + + ++ S N A +
Sbjct: 170 NVKRLLLFDKLYNTIIENGIRSGNLEKTSNTTFSTQSEYKNYVDNIIEQYVKQAKI 225
>gi|217970665|ref|YP_002355899.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
gi|217507992|gb|ACK55003.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Thauera sp. MZ1T]
Length = 260
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 15/163 (9%), Positives = 50/163 (30%), Gaps = 9/163 (5%)
Query: 463 YMWVQIKESIPARDRKLEEVLTDVK--------KDWKTVKTAEEVSSKANQLVLEYSKEG 514
+ +++ + E+ + + K++K E +A ++ + G
Sbjct: 99 LIRAYLQDYVRTNPVDDAELKKEYEAIKGRMGDKEYKPRHVLVETEDQAKAIIARL-QGG 157
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
F ++ K + + + P+++ Y V
Sbjct: 158 TAFEEVAKESRDPGSKERGGELGWSNPAMYVKPFSDAMVQLQKGKYTTTPVKSDFGYHVI 217
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ + + ++ L Q + + ++ + L+ + V
Sbjct: 218 QLDDVRDVQPPPFEEVKPQLQQRLQQQKIERHVLDLREKAKVE 260
Score = 37.5 bits (84), Expect = 7.5, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 16/68 (23%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
S V V +P ++ L + + L+ L
Sbjct: 25 SPVAKVNGVAIPGERSDAMLAEQRAQ-----------GAPDGEQLRNAVREELIRREVLS 73
Query: 101 QFIEDIGL 108
Q GL
Sbjct: 74 QEAGKRGL 81
>gi|196037443|ref|ZP_03104754.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus NVH0597-99]
gi|196031685|gb|EDX70281.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus NVH0597-99]
Length = 285
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 28/246 (11%), Positives = 84/246 (34%), Gaps = 20/246 (8%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + +++ + D + K K + L
Sbjct: 42 DFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDDDVEKEVQKVKNQYGDQFTAVLENNRLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ K L + + E ++V K + K ++A +
Sbjct: 102 DEADFKKQIKFKLAMNEAIKKSVTE---------KDVKAHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ + + N + + + V + P
Sbjct: 153 IKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQISN-P 210
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS------VIAYLKSQYSVTV 618
+++ Y + K+T+ K ++ D+ + + + ++ + ++ + ++ +
Sbjct: 211 VKSPNGYHIIKLTDKK--ELKPYDEVKDSIRKNLEEERIADPTFSHKLLQKELKKANIKI 268
Query: 619 HDNLIQ 624
+DN ++
Sbjct: 269 NDNELE 274
>gi|319775614|ref|YP_004138102.1| survival protein SurA [Haemophilus influenzae F3047]
gi|317450205|emb|CBY86421.1| survival protein SurA homolog [Haemophilus influenzae F3047]
Length = 311
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 185 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSK 244
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 245 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 303
Query: 614 YSVT 617
++
Sbjct: 304 ANIQ 307
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 18/161 (11%), Positives = 51/161 (31%), Gaps = 29/161 (18%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ +V + FL+ ++ A G V +V + S
Sbjct: 2 KKFVLRSFLLAALGCVAFASMAQA-----GERVVATVDGIPILESQV-----------RA 45
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+G + + +D ++ + + +++ G++ D + + + +G
Sbjct: 46 NMGKKGD---------RQSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNG-- 94
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ F+ L +GI+ + + V +
Sbjct: 95 --LTYGQFLDALDYQGISLNTFRQQIANQMVMGAVRNKAIQ 133
>gi|291550023|emb|CBL26285.1| PPIC-type PPIASE domain [Ruminococcus torques L2-14]
Length = 351
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 13/133 (9%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP-----------FSSFINSWK 61
+AK V+ L +++ TV +VG +K+ + + N +
Sbjct: 4 LAKRLAVLAVAGTLTATSLTGCGTINTDETVATVGDEKITLGVANFYARLQQAQYENYYA 63
Query: 62 QELGM-ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+G + + ++ K+IL+NL + + Q D + I
Sbjct: 64 SMMGTTAEEMWAKKASDDQTYEEQTKKRILENLENMYLVSQHASDYDVALTEEE-QQAIK 122
Query: 121 RSPLFHGKDNKFS 133
+ G+DN
Sbjct: 123 DAAAKFGEDNSDD 135
>gi|32265604|ref|NP_859636.1| hypothetical protein HH0105 [Helicobacter hepaticus ATCC 51449]
gi|32261652|gb|AAP76702.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 276
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 16/243 (6%), Positives = 55/243 (22%), Gaps = 4/243 (1%)
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQL 439
+ ++ + + F S E + ++ A ++ +
Sbjct: 32 TDKDMEILKQSIPNFNYNKLSEQEKEMLINELINRQLILKAAKQEKLDTSKEYTDTINSI 91
Query: 440 LFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
+ + ++ +P + ++ + +E + E +
Sbjct: 92 KDNLLIDLWTKKQANSTQVPTMNDAQLRKIYQENEGEFIDQEGKARHILVKSESEAKEII 151
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+ + + AS N + + F
Sbjct: 152 KELDKVGKAKAEAKFIELANAKSIDPASKQQKNGGDLGVFKRAGMDPMFSKAAFDLKPGT 211
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYS 615
P+ Y + + V + + + I L+++
Sbjct: 212 YTKEPVLTQFGYHIIYLERKSEPKVIPYKDAKKIIENSIKMQSIQGGMMQKIQALRAKAK 271
Query: 616 VTV 618
+ +
Sbjct: 272 IKI 274
>gi|332297435|ref|YP_004439357.1| basic membrane protein [Treponema brennaborense DSM 12168]
gi|332180538|gb|AEE16226.1| basic membrane protein [Treponema brennaborense DSM 12168]
Length = 360
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 22/208 (10%), Positives = 59/208 (28%), Gaps = 31/208 (14%)
Query: 21 LFVPFLIWGLSDA-LFSVSGSSTVVSV---GRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L V F++ A +F+ + + +V + + N + Q
Sbjct: 4 LVVSFIVCICGAAAVFAQADLQPLANVKLYQPESITLKQLKNRVESYK---LQSGVASFT 60
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
++ K+IL+ ++ + Q G+ ++ +
Sbjct: 61 VDQ------KKEILNGMIDEKLVVQAAMKNGINITDAQINDYFLSYMSQQIGQTVTEVQL 114
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ G++ +YI L + + + YI+
Sbjct: 115 AKLVKEQTGMSLDDYIKGQ------------------VGMGLAEYKSYLKNQLIAQQYIL 156
Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ P++ + ++E K ++
Sbjct: 157 SLKQSEVQKIAPTDEEIRAFYEMSKSSF 184
>gi|307636864|gb|ADN79314.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
908]
gi|325995453|gb|ADZ50858.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
2018]
gi|325997051|gb|ADZ49259.1| putative peptidyl-prolyl cis-trans isomerase [Helicobacter pylori
2017]
Length = 299
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 20/255 (7%), Positives = 60/255 (23%), Gaps = 14/255 (5%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
M + + K E+ + ++ + + L ++ +
Sbjct: 55 KSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKAEKLNQTPEFKAMMEAVK 114
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
A+ F + + + K + + +E
Sbjct: 115 KQALVE-----FWAKKQAEEVKKIQIPEKEMQDFYNANKDQ-----LFVKQEAHARHILV 164
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +S Q + + + S N + + D
Sbjct: 165 KTEDEAKRIISEIDKQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFS 224
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----S 605
F+ P++ Y + + + ++ + M+ + L
Sbjct: 225 KAAFALTPGNYTKTPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQ 284
Query: 606 VIAYLKSQYSVTVHD 620
I L+ + ++
Sbjct: 285 RIEELRKHAKIVINK 299
>gi|160902059|ref|YP_001567640.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Petrotoga mobilis
SJ95]
gi|160359703|gb|ABX31317.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Petrotoga mobilis
SJ95]
Length = 667
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 22/162 (13%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVS------------GSSTVVSV-- 46
M +K R + I + + W ++ + S + +V+ +
Sbjct: 1 MNNWFKKHER-LITIIVIAGFLAGIVWWSVATYVSSRNPVINSQSGNTLRKEDSVLVITK 59
Query: 47 GRQK------VPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ + S N +Q+ + Q G ++ + LD +++D L +
Sbjct: 60 DGEDLDYPYWIMKSEVDNITQQQAQIYQQYYGQQLDP-VFDYLSLDNQVVDLLFDEKIVR 118
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
+ E L + V +I + KF + + L
Sbjct: 119 YYAEQSDLLPSNEEVNNQINTQVDQYITQYKFDETNWNNMLQ 160
>gi|94313616|ref|YP_586825.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
metallidurans CH34]
gi|93357468|gb|ABF11556.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase [Cupriavidus
metallidurans CH34]
Length = 291
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 9/88 (10%), Positives = 22/88 (25%), Gaps = 14/88 (15%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
+ T+ V + + ++ + +A + + +
Sbjct: 35 GSGAGTGLPPGTLAVVNGVPIAQTQLDDALRVAR--------------QADTPQMRQFFT 80
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGE 118
L+ L Q E G + V
Sbjct: 81 QELIVREVLRQSAEKDGYDRRPEVVQAA 108
>gi|300704055|ref|YP_003745657.1| peptidylprolyl isomerase; exported protein [Ralstonia solanacearum
CFBP2957]
gi|299071718|emb|CBJ43042.1| Putative Peptidylprolyl isomerase; exported protein [Ralstonia
solanacearum CFBP2957]
Length = 265
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%)
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ K + DEL +YEK K ++ + + ++ + +A LK G F +
Sbjct: 101 FEDYVKNSPTTEDELHKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEE 160
Query: 299 LAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A+ Q K + G P + ++ L K + FG+ + + +
Sbjct: 161 IAKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEITLTPVKTQFGWHVIRLDD 220
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEK 383
+ + +F++VK + M + ++
Sbjct: 221 TRDAKIPAFEDVKPQLLEMMMGDQNWQR 248
>gi|196044409|ref|ZP_03111645.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB108]
gi|196025048|gb|EDX63719.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB108]
Length = 285
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 19/154 (12%), Positives = 61/154 (39%), Gaps = 11/154 (7%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+EV K + K ++A ++ + G +F ++ K LL+ + +
Sbjct: 125 TEKEVKAHYKPEIKASHILVSDENEAKEIKKKLD-AGASFEELAKQESQDLLSKEKGGDL 183
Query: 538 DNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596
N + + + V + P+++ Y + K+T+ K ++ D+ + +
Sbjct: 184 GYFNSGRMAPEFETAAYKLKVGQISN-PVKSPNGYHIIKLTDKK--ELKPYDEVKDSIRK 240
Query: 597 MMNKDLLDS------VIAYLKSQYSVTVHDNLIQ 624
+ ++ + ++ + ++ ++D+ ++
Sbjct: 241 NLEEERIADPTFSHKLLQKELKKANIKINDSELE 274
>gi|89070359|ref|ZP_01157666.1| PPIC-type PPIASE domain protein [Oceanicola granulosus HTCC2516]
gi|89044006|gb|EAR50181.1| PPIC-type PPIASE domain protein [Oceanicola granulosus HTCC2516]
Length = 405
Score = 43.7 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 17/132 (12%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
S ++V + F + + + E + LV
Sbjct: 29 SPAITVNDSAISFYEIDQ-----RAKLLRVFNTPGDLEALAR--------EQLVEDRLKL 75
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
++ GL+ + A F G+ + ++ F+ LA G+ E+ D +S
Sbjct: 76 AELDRAGLQLSEESLA---AEMEAFAGRAD-LPYEQFIGVLAEAGVAEETLRDFVRVGVS 131
Query: 161 RTDVVGMFVGGM 172
D + G
Sbjct: 132 WRDYIRTRYRGR 143
>gi|255656246|ref|ZP_05401655.1| putative protein export chaperone [Clostridium difficile QCD-23m63]
Length = 253
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 16/172 (9%), Positives = 46/172 (26%), Gaps = 22/172 (12%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSV-------------SGSSTVVSVGRQKVPFS 54
K + ++ V + G +F + S V ++G +K+
Sbjct: 44 KLNNKTLKAIVAIVAVGAICLG-GGYVFGKEAGRKLPATSKHYNSSEVVATIGDKKITGE 102
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ + + +++ +++ L + + +
Sbjct: 103 MLRKRMEPLF-----YLNAKTTMTDDEIRSYESNMIETMITSDILSSEAAKEKISITNDQ 157
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+ + + + F L + + EK D K L + +
Sbjct: 158 LDAQYNNLMSSIESAMGMTKEEF---LKQFDLTEKYIKDDMKKELVASKYLN 206
>gi|219870954|ref|YP_002475329.1| peptidyl-prolyl cis-trans isomerase SurA [Haemophilus parasuis
SH0165]
gi|219691158|gb|ACL32381.1| peptidyl-prolyl cis-trans isomerase SurA [Haemophilus parasuis
SH0165]
Length = 312
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 23/157 (14%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ F ++ S + + V +V + S + ++
Sbjct: 9 LFIAGFALFAFSS---ANAEERVVATVDGYPIMQSQVKQAL----------------GKK 49
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
A + K L+ ++ + + I++ G++ D+ V + +G +
Sbjct: 50 ANTEANRKAALETIIDDFVVQRAIKESGIKVDYAYVDQMMEDVAAQNGITY----GQLLD 105
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
L +GI+ +Y L V +G +
Sbjct: 106 ALDYQGISLSQYRQQLAHQLLMEQVRQQSIGNSIQVD 142
Score = 37.9 bits (85), Expect = 5.0, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 40/123 (32%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ +K + + F + K ++ + + + S
Sbjct: 188 QAKAKLLSITADIKSGKITFEEAAKINSVDYISGIDGGDLGFNFLDAYDSTFANIASKSK 247
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL---DSVIAYLKSQY 614
V P ++ + + KVT+++ G E Q+++K + I L+S+
Sbjct: 248 IDVISSPFKSQFGWHILKVTDTRRGDRTEDAYLQKAYEQLIDKQVQVASKDWIKVLRSKL 307
Query: 615 SVT 617
+
Sbjct: 308 DIK 310
>gi|296501860|ref|YP_003663560.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
gi|296322912|gb|ADH05840.1| peptidylprolyl isomerase [Bacillus thuringiensis BMB171]
Length = 285
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 60/151 (39%), Gaps = 11/151 (7%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V K + K ++A ++ + G +F ++ K LL+ ++ +
Sbjct: 125 TEKDVKDHYKPEIKASHILVSDENEAKEIKSKLD-AGASFEELAKQESQDLLSKDKGGDL 183
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596
+ + + + V + P+++ Y V K+T+ K ++ D+ + + +
Sbjct: 184 GYFNSGTMAPEFETAAYKLNVGQISN-PVKSSNGYHVIKLTDKK--DLKPYDEVKNSIRK 240
Query: 597 MMNKD------LLDSVIAYLKSQYSVTVHDN 621
+ ++ ++ + ++ ++D+
Sbjct: 241 NLEEERTADPVFSKKLLQEELKKANIKINDS 271
>gi|254293162|ref|YP_003059185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hirschia baltica
ATCC 49814]
gi|254041693|gb|ACT58488.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hirschia baltica
ATCC 49814]
Length = 322
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 43/166 (25%), Gaps = 19/166 (11%)
Query: 11 TWVAKIF---LVVLFVPFLIWGLSDAL--------FSVSGSSTVVSVGRQKVPFSSFINS 59
+ V K L +L ++ D + + +V + +
Sbjct: 9 SPVLKTVRGMLGLLGALIVLSACEDEQAILIQPTPTAADDAVIAATVDGYPIYVADIEME 68
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ + +++ + E R IL++L+ L + E L V +
Sbjct: 69 AESQGILLAGRTLDPSTPEFTR-------ILNSLIDDHLLAKEAEKQNLH-TDPYVQHRL 120
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
+ S V + + + R +
Sbjct: 121 KVIRERLLGNMLLSQGVDEASIQKYYETSINLKQLQLGEEYRVRQI 166
>gi|167854677|ref|ZP_02477457.1| bifunctional heptose 7-phosphate kinase/heptose 1-phosphate
adenyltransferase [Haemophilus parasuis 29755]
gi|167854214|gb|EDS25448.1| bifunctional heptose 7-phosphate kinase/heptose 1-phosphate
adenyltransferase [Haemophilus parasuis 29755]
Length = 312
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 23/157 (14%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ F ++ S + + V +V + S + ++
Sbjct: 9 LFIAGFALFAFSS---ANAEERVVATVDGYPIMQSQVKQAL----------------GKK 49
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
A + K L+ ++ + + I++ G++ D+ V + +G +
Sbjct: 50 ANTEANRKAALETIIDDFVVQRAIKESGIKVDYAYVDQMMEDVAAQNGITY----GQLLD 105
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
L +GI+ +Y L V +G +
Sbjct: 106 ALDYQGISLSQYRQQLAHQLLMEQVRQQSIGNSIQVD 142
Score = 37.9 bits (85), Expect = 4.9, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 37/123 (30%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ +K + + F + K ++ + + + S
Sbjct: 188 QAKAKLLSITADIKSGKITFEEAAKINSVDYISGIDGGDLGFNFLDAYDSTFANIASKSK 247
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEK---DKFISYLTQMMNKDLLDSVIAYLKSQY 614
V P ++ + + KVT+++ G E + L + I L+S+
Sbjct: 248 IDVISSPFKSQFGWHILKVTDTRRGDRTEDAYLQRAYEQLIDKQVQVASKDWIKVLRSKL 307
Query: 615 SVT 617
+
Sbjct: 308 DIK 310
>gi|297539447|ref|YP_003675216.1| EpsD family peptidyl-prolyl cis-trans isomerase [Methylotenera sp.
301]
gi|297258794|gb|ADI30639.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Methylotenera sp.
301]
Length = 316
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 13/108 (12%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ K+ LVV+F G + S V ++ + K + ++
Sbjct: 2 NKILKLSLVVIFCNLAACGKGSEKVA--NSQIAAKVNGVEITTHQIDSVMKSAQNVTAEN 59
Query: 71 IGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ KK LD L+ + L+ +
Sbjct: 60 V-----------SEFRKKALDKLIDQQLVLDKASKESLDRTPDVILEI 96
>gi|157164251|ref|YP_001467105.1| holo-[acyl-carrier-protein] synthase [Campylobacter concisus 13826]
gi|112801387|gb|EAT98731.1| foldase protein PrsA [Campylobacter concisus 13826]
Length = 272
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 33/138 (23%), Gaps = 18/138 (13%)
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
D+ K +K A K+ G L Q
Sbjct: 147 NDIIAQLKNLKGEVLTKKFAE------LASQKSIDKGSAAHGGELGWFGQ--------SQ 192
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603
FS V P++ Y V + K ++ + Q + +
Sbjct: 193 MVKPFADAAFSMANGTVSTKPVKTQFGYHVILKEDGKAAGTVSFEQAKPEIEQAVKMEKF 252
Query: 604 DSVI----AYLKSQYSVT 617
+ + L+ + +
Sbjct: 253 QAAVRQKSEALRQKAKIE 270
>gi|62184931|ref|YP_219716.1| hypothetical protein CAB299 [Chlamydophila abortus S26/3]
gi|62147998|emb|CAH63749.1| putative exported protein [Chlamydophila abortus S26/3]
Length = 361
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 16/167 (9%), Positives = 46/167 (27%), Gaps = 10/167 (5%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
V I ++ + + +L++++ + +
Sbjct: 61 DDTVVTTLDVIQKLNLLFASSYPQLLESYPARSQYYTAMWPVVLESVIDEFLMVADAKAK 120
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
++ D V EI F D+ + + E + + ++++ V+G
Sbjct: 121 KIQVDPTTVNQEIEAM---------FGRDLSFFYVHFDMTPEDIFKVVHRTLIAQ-RVMG 170
Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
M V + + + Y + ++ + L
Sbjct: 171 MMVRSKVMLKVTPGKIREHYNQLAEEAAKTTLWKYRVVTIKAATESL 217
>gi|228951646|ref|ZP_04113749.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228808039|gb|EEM54555.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
Length = 269
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 59/151 (39%), Gaps = 11/151 (7%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V K + K ++A ++ + G +F ++ K LL+ ++ +
Sbjct: 109 TEKDVKDHYKPEIKASHILVSDENEAKEIKSKLD-AGASFEELAKQESQDLLSKDKGGDL 167
Query: 538 D-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQ 596
+ + + V + P+++ Y V K+T+ K ++ D+ + + +
Sbjct: 168 GYFNSGTMAPEFERAAYKLNVGQISN-PVKSSNGYHVIKLTDKK--DLKPYDEVKNSIRK 224
Query: 597 MMNKD------LLDSVIAYLKSQYSVTVHDN 621
+ ++ ++ + ++ ++D+
Sbjct: 225 NLEEERTADPVFSKKLLQEELKKANIKINDS 255
>gi|33519602|ref|NP_878434.1| survival protein SurA precursor [Candidatus Blochmannia floridanus]
gi|33517265|emb|CAD83649.1| survival protein SurA precursor [Candidatus Blochmannia floridanus]
Length = 426
Score = 43.7 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 23/224 (10%), Positives = 53/224 (23%), Gaps = 10/224 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V + + S N I + + L +KILD L+ +
Sbjct: 26 DRIAALVNQNIILKSDVFNKINILKKDILHS-----DQFSLENTKLYQKILDQLIINNLI 80
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKM 158
Q ++ DH + I + + + F+ L G+N K+Y +
Sbjct: 81 AQIATKNNVQIDHNNIDQVI----NYVAHCRNMTKNQFLMYLQHNLGLNFKQYYSEIYQD 136
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + + + + + + P+
Sbjct: 137 ILNKLICNHIISQRIKISTHEINQTAQKLSFINFHKQFKFIHTIIELPIPAETTQINILN 196
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
+ + + + I + K
Sbjct: 197 NFAEQLSKKKELHDNIQNIISSYYNNNIFPRITTHIQPWTAWKN 240
>gi|229091310|ref|ZP_04222528.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42]
gi|228692076|gb|EEL45817.1| Foldase protein prsA 1 [Bacillus cereus Rock3-42]
Length = 149
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 8/135 (5%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEM 559
K + V E G++F + K + Q + + +
Sbjct: 11 EKTAKEVKEKVNNGEDFAALAKQYSEDTGSKEQGGEITGFAPGQTVKEFEEAAYKLDAGQ 70
Query: 560 VKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLTQMMNKDLL----DSVIAYLKSQ 613
V P++ Y + KVT+ K + KD + Q +D V+ L
Sbjct: 71 V-SEPVKTTYGYHIIKVTDKKELKPFDEVKDSIRKDIEQQRLQDTTGKWKQQVVNELLKD 129
Query: 614 YSVTVHDNLIQRYLD 628
+ V+D + +
Sbjct: 130 ADIKVNDKEFKNTFE 144
>gi|323488239|ref|ZP_08093489.1| peptidylprolyl isomerase [Planococcus donghaensis MPA1U2]
gi|323398097|gb|EGA90893.1| peptidylprolyl isomerase [Planococcus donghaensis MPA1U2]
Length = 243
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 46/156 (29%), Gaps = 1/156 (0%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
NS ++L G V+ E + ++ L ++ L L+ + Q E+ G +AD V
Sbjct: 71 VYNSVARQLESTLAAQGQSVSDEESANL-LKEQALSVLIGNKVILQDAEEKGYKADDETV 129
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
+ + + + + E + + + +V V
Sbjct: 130 KERLEELKNQFETEEAMNKALKETGFTIEEMELQLREQLIYEQYVAEEVEVDKVTDEEVQ 189
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+ E + + R +A
Sbjct: 190 AAYDGFVESSEAEAPPLKEMEPTIRQSLEGQKTQDA 225
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 38/136 (27%), Gaps = 3/136 (2%)
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF 543
V K + + + E + + + K L + T ++ E
Sbjct: 110 NKVILQDAEEKGYKADDETVKERLEELKNQFETEEAMNKALKETGFTIEEMELQLREQLI 169
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL 603
+ +V V+ V ++ V + + L +D L
Sbjct: 170 YEQYVAEEV---EVDKVTDEEVQAAYDGFVESSEAEAPPLKEMEPTIRQSLEGQKTQDAL 226
Query: 604 DSVIAYLKSQYSVTVH 619
+ I LK + ++
Sbjct: 227 FAQIEELKKSAEIEIN 242
>gi|304313026|ref|YP_003812624.1| hypothetical protein HDN1F_34090 [gamma proteobacterium HdN1]
gi|301798759|emb|CBL46992.1| Hypothetical protein HDN1F_34090 [gamma proteobacterium HdN1]
Length = 750
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 20/155 (12%)
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
+ + + V+ +++K + + S +++ + ++G T
Sbjct: 600 ITVSSQKDADRVVDEIRKGLSFEEAVRKYSLASDKT-----------ENPPGSMGRISRT 648
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE--KD 588
++ + +S F P V T + E +
Sbjct: 649 EKNLSFLQKLTLILPAGEVSNSFRMPDGKSWEI-------LWVDSRTAVSLPKSDESVRS 701
Query: 589 KFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ L Q + +A L + V ++ +L
Sbjct: 702 EIRRTLAQEKAQTQFADQVADLWQRAEVQLNQSLF 736
>gi|207723563|ref|YP_002253962.1| isomerase rotamase protein [Ralstonia solanacearum MolK2]
gi|207743079|ref|YP_002259471.1| isomerase rotamase protein [Ralstonia solanacearum IPO1609]
gi|206588764|emb|CAQ35727.1| isomerase rotamase protein [Ralstonia solanacearum MolK2]
gi|206594476|emb|CAQ61403.1| isomerase rotamase protein [Ralstonia solanacearum IPO1609]
Length = 243
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 3/148 (2%)
Query: 239 VHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQ 298
+ K + DEL +YEK K ++ + + ++ + +A LK G F +
Sbjct: 79 FEDYVKNSPTTEDELHKQYEKIKAQFGNGKEYHAHHILVDKEADAKAIIAKLKAGGNFEE 138
Query: 299 LAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
+A+ Q K + G P + ++ L K + FG+ + + +
Sbjct: 139 IAKAQSKDKGSGANGGDLDWANPGTYVPEFSAALTGLKKGEITLTPVKTQFGWHVIRLDD 198
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEK 383
+ + +F++VK + M + ++
Sbjct: 199 TRDAKIPAFEDVKPQLLEMMMGDQNWQR 226
>gi|15888445|ref|NP_354126.1| hypothetical protein Atu1105 [Agrobacterium tumefaciens str. C58]
gi|15156137|gb|AAK86911.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 315
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 19/148 (12%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
VP + + F+ S V V + + + ++ G
Sbjct: 21 VPMAVVPYAGQAFADSTVKIV--VNKTPITNDDIARRVAFLK--LQRQSG---------- 66
Query: 83 VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
L++K + LV A + I + + V AR +NK + LA
Sbjct: 67 -NLNEKAREQLVDEALKREEIARVKMSVSTQDVDAAFAR----FAGNNKMKPEQLTKVLA 121
Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ G+ + + +S +V G
Sbjct: 122 QAGVGAEHFKAFIAVQMSWPRLVNARYG 149
>gi|332829600|gb|EGK02246.1| hypothetical protein HMPREF9455_01516 [Dysgonomonas gadei ATCC
BAA-286]
Length = 671
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 54/606 (8%), Positives = 145/606 (23%), Gaps = 51/606 (8%)
Query: 52 PFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
+S+ ++Q+ + E + K++ +N+ + ++ +
Sbjct: 81 TTASYQRQLSSYRSQMAQQYMNNTDYEDEYIEKIYKRMKENVEINHVMFP-FDNKEIVLP 139
Query: 112 HGRVWGEIARSPL--------FHGKDNKFSHDVFVSRLAREGI-----NEKEYIDHYTKM 158
+ F G + + E ++
Sbjct: 140 ADTLRMYKKAMEARAKILKGGFTGTELSTLRSGAMFYPRAESRNGYIGWVSPFMFAAKVE 199
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + V + + + + PS + +
Sbjct: 200 DAIYSLPLNEVSMPIRAARGYHIVQVLNRRPAMGAVEIEQVVFNFSHLPPSQQQIDSVGK 259
Query: 219 KYKDNYRAP----------------EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE 262
Y+ + F + + + + + EK +
Sbjct: 260 VAWREYKNIKSPADYQSLCDLFSKVHKMETNGCYFGIIKLDSNLPMDFTMAAFSLEKAGD 319
Query: 263 KYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
++ +K E+ ++ + L ++ + LSD S K Y
Sbjct: 320 ISKPVMSNYGYHIIRLLRKIPTESLDVMRNQLRERILRSDKVQELSDEKRRSL-KSYFNV 378
Query: 323 VSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDI--ANQMRITKA 380
++ L + + F +I + +I ++ R +
Sbjct: 379 TVNKEAYSKLYEITETVSPRDSVFLKMIKNGDDILFDIDGQRAYPVREFAKYINYRQKER 438
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
+ + E + + +I L L D+ + + +
Sbjct: 439 IKDTNDITIMQIEEASPYSLSSDILNEYFEGFQALLLSDYEENTLDKRFPDFARIVNEFS 498
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV--KTAEE 498
+ D + D + ++ V K AE
Sbjct: 499 DGLLYYDVQNKNVWERSKTDTEGLAACFDKNKVKYSLDGPRYKGMVVYAKSGDILKKAEA 558
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
S K + ++ + I + ++++ G
Sbjct: 559 ASKKVKSREAFIKEIDDTLNK--DSIRVKIEPGLWIKGGNAYVD-------NKIYEGATP 609
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
Y F VT + ++ + + L AYL+++Y V +
Sbjct: 610 -------PPFNGYPYFFVTGKFIDTPEDYTDVRYAVELDYQEKLEKEWAAYLQNKYKVEI 662
Query: 619 HDNLIQ 624
+ + +
Sbjct: 663 NKSALN 668
>gi|237756622|ref|ZP_04585137.1| SurA N- domain family [Sulfurihydrogenibium yellowstonense SS-5]
gi|237691220|gb|EEP60313.1| SurA N- domain family [Sulfurihydrogenibium yellowstonense SS-5]
Length = 290
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 15/157 (9%), Positives = 51/157 (32%), Gaps = 25/157 (15%)
Query: 18 LVVLFVPFLIWGLSDALFSVSG----SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
+ ++ + L++ ++ + G V+ V + V S +
Sbjct: 9 VFLMLLTVLLFTFNNKAKAEDGYRLFDKVVLVVNGEPVLKSDLEFAKN------------ 56
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
++ DK+ + +++ L Q +G+ + + +
Sbjct: 57 ------WYNIKDDKEAEEKIINSFLLAQQARRMGISVSPREIDNAVLNIA---KANGIDD 107
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ F +L GI+ + + + + ++ +++
Sbjct: 108 LETFKKKLEDSGISYSKLKEFLARDMLANRLLHLYMR 144
>gi|170698305|ref|ZP_02889381.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria IOP40-10]
gi|170136796|gb|EDT05048.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria IOP40-10]
Length = 282
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 10/94 (10%), Positives = 30/94 (31%), Gaps = 19/94 (20%)
Query: 20 VLFVPFLIWGLS-----DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+L + W ++ A + + +V +V + + +
Sbjct: 8 ILIATAIAWQMALPVQAQAQSASLPAGSVATVNGTPITDAEVNAVLQ------------- 54
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
S++ + + + I + L++ + Q E
Sbjct: 55 -ASKQPDTPQIRQAIKNQLIARVLIQQAAEKAKY 87
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 21/202 (10%), Positives = 54/202 (26%), Gaps = 21/202 (10%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL---TDVKKDWKTV 493
+Q + D P + A + + +K++I +V ++
Sbjct: 79 QQAAEKAKYGDKPEVQAAMQAAKANAEAQLYLKDNIKPAPVTDAQVKARYDEIVGSLGKE 138
Query: 494 KTAEEV----SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ---------INRMDNE 540
+ + + VL K G+ F + + + + ++
Sbjct: 139 EVKPRIIVVKDAATAATVLAQLKAGQTFDALARQYSQAPSAGAGGELPWVSFKMPLVEGN 198
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIE-NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN 599
+ + P V I + + K+ + V D S + Q +
Sbjct: 199 TQGLPLPVAQAMTKLPAGGVTADFIPLGNGARAIVKIDAKRPTQVPAYDTAQSTIRQQLQ 258
Query: 600 KDLLD----SVIAYLKSQYSVT 617
+ ++ L +
Sbjct: 259 ALAFEKATAELVGGLLKDAKIQ 280
>gi|329122338|ref|ZP_08250925.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
11116]
gi|327473620|gb|EGF19039.1| peptidyl-prolyl cis-trans isomerase [Haemophilus aegyptius ATCC
11116]
Length = 313
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 187 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSK 246
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 247 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 305
Query: 614 YSVT 617
++
Sbjct: 306 ANIQ 309
Score = 40.2 bits (91), Expect = 1.00, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 51/163 (31%), Gaps = 29/163 (17%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ +V + FL+ ++ A G V +V + S
Sbjct: 2 KMKKFVLRSFLLAALGCVAFASMAQA-----GERVVATVDGIPILESQV----------- 45
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+G + + +D ++ + + +++ G++ D + + + +G
Sbjct: 46 RANMGKKGD---------RQSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNG 96
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ F+ L +GI+ + + V +
Sbjct: 97 ----LTYGQFLDALDYQGISLNTFRQQIANQMVMGAVRNKAIQ 135
>gi|229846544|ref|ZP_04466652.1| stationary-phase survival protein SurA [Haemophilus influenzae
7P49H1]
gi|229810637|gb|EEP46355.1| stationary-phase survival protein SurA [Haemophilus influenzae
7P49H1]
Length = 311
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 185 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSK 244
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 245 QG-VVSAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 303
Query: 614 YSVT 617
++
Sbjct: 304 ANIQ 307
Score = 37.1 bits (83), Expect = 8.0, Method: Composition-based stats.
Identities = 18/154 (11%), Positives = 47/154 (30%), Gaps = 27/154 (17%)
Query: 20 VLFVPFLIWGLSDALFSVSGS---STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
+ FL+ L F+ V +V V S +G +
Sbjct: 4 FILKSFLLATLGCVAFASMAQAEERVVATVDGIPVLESQV-----------RANMGKKGD 52
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+ +D ++ + + +++ G++ D + + + +G ++
Sbjct: 53 ---------RQSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNG----LTYGQ 99
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
F+ L +GI+ + + V +
Sbjct: 100 FLDALDYQGISLNTFRQQIANQMVMGAVRNKAIQ 133
>gi|320536418|ref|ZP_08036455.1| basic membrane family protein [Treponema phagedenis F0421]
gi|320146728|gb|EFW38307.1| basic membrane family protein [Treponema phagedenis F0421]
Length = 361
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 23/295 (7%), Positives = 69/295 (23%), Gaps = 13/295 (4%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVG---RQKVPFSSFINSWKQELGMISQKIGFVVN 76
++ L + S + + R+ + K + I +++G ++
Sbjct: 4 IITAVLFFAVFLGFLTAQSALQPIAQISIQTREPITLGQ----IKSRVTAIEKELGKKLS 59
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+ ++ +D+ + Q G+ V +
Sbjct: 60 TAD------RRRFMDSFIEERLFAQAAIKEGIRITDSEVNQYFNNILSQQMGKLTTEAEF 113
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
E I+ + + M + ++ ++ F D +
Sbjct: 114 ADYIKETEKISLDQLMKKQNGMTLAEYKAFLKTQLSTQRYVMQKKSAEFQKLKGPTDSQI 173
Query: 197 LNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAE 256
+ + + + K + D +K K +++ + +
Sbjct: 174 RSYYELNKQIFFRPDTVKLFLVSIPKGNDPNAAKIKAKGFNDQLKKSGKKAMADIKSKGN 233
Query: 257 YEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
K + + D + K + E +
Sbjct: 234 TPKAGYSAGEIYLAKTSETAKQLGLSMDALLEIFKMDINTVSEVNETPLDYQNFM 288
>gi|90021693|ref|YP_527520.1| tRNA pseudouridine synthase [Saccharophagus degradans 2-40]
gi|89951293|gb|ABD81308.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Saccharophagus
degradans 2-40]
Length = 264
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 28/237 (11%), Positives = 61/237 (25%), Gaps = 10/237 (4%)
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
+A K E+ +A + L+D + DV+ E +
Sbjct: 37 EAYLNFKRIPLTDEKRVASALVVYNEREAISKAIEKSDLLDKSLIDVEVAEFKKQMLISR 96
Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
K+ + + R + + K A
Sbjct: 97 YFEAYIKKNVTPEAIKNYYNNNQDEYQNKKIHVAHILFRTNGRMSDE-------EKNARL 149
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
+ +K L+ +++ ++ + S + +D VF+
Sbjct: 150 LKAKEAHARLQQNEKFEDLAKEYSDDKLSAQKGGDLGWLDE--GSIDPVFSRTVFAMDAG 207
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
V P Y + KV + + D + + + + + LK Q
Sbjct: 208 AV-SEPFVTSYGYHIVKVIEAAKTTTKPFDAVKGDIAYKLKEQAKQAEMNRLKEQAK 263
>gi|116625220|ref|YP_827376.1| DSBA oxidoreductase [Candidatus Solibacter usitatus Ellin6076]
gi|116228382|gb|ABJ87091.1| DSBA oxidoreductase [Candidatus Solibacter usitatus Ellin6076]
Length = 344
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 18/118 (15%)
Query: 14 AKIFLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
K+ L + +P L+ LS + SGS+ VV + K+ L
Sbjct: 1 MKLSLTLSLIPLLVCALSTARASDTGTPSGSTVVVDIDGVKLTADDVEQKLPGRLLQARA 60
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD---HGRVWGEIARSPL 124
++K +D + LD+ + L D V IA+ P
Sbjct: 61 TY-----------YQTERKTVDEFIETYLLDRAAKAENLTVDALLERHVNSAIAKDPS 107
>gi|194466674|ref|ZP_03072661.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lactobacillus
reuteri 100-23]
gi|194453710|gb|EDX42607.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lactobacillus
reuteri 100-23]
Length = 311
Score = 43.3 bits (99), Expect = 0.11, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 81/301 (26%), Gaps = 40/301 (13%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
S+ +A I L +P G + V + K+ S + +S KQ
Sbjct: 2 KSKKLIAIIAGAALMMPLAACG----------NKAVATTNGGKITESEYYSSMKQTSAG- 50
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
K++L ++ L+ + G E +V + +G
Sbjct: 51 -------------------KQVLQQMILDKVLE---KQYGKEVSDKQVNAQYNTYKSEYG 88
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
D F + L + + EK L T + +
Sbjct: 89 SD-------FNAYLQSQNLTEKSLKQQIRSNLLLTAAARHYSHITTKQINKQWTKYQPKV 141
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
+ ++ ++ ++ + F+K + + + +
Sbjct: 142 QTATILVGSKSDAEDIINQLNDSSNKYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQL 201
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
S + A K E +P V + + +S Q+ +E +
Sbjct: 202 DSAYKKAAFKLKTGEYTTTPVKTDDGYQVIYMIEHPAKGKKSQHINDLKNQIVQENMNNQ 261
Query: 308 S 308
+
Sbjct: 262 N 262
>gi|118476746|ref|YP_893897.1| peptidylprolyl isomerase [Bacillus thuringiensis str. Al Hakam]
gi|225863116|ref|YP_002748494.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB102]
gi|229090207|ref|ZP_04221455.1| Foldase protein prsA 2 [Bacillus cereus Rock3-42]
gi|229183467|ref|ZP_04310692.1| Foldase protein prsA 2 [Bacillus cereus BGSC 6E1]
gi|118415971|gb|ABK84390.1| protein export protein [Bacillus thuringiensis str. Al Hakam]
gi|225789473|gb|ACO29690.1| peptidylprolyl isomerase PrsA2 [Bacillus cereus 03BB102]
gi|228600051|gb|EEK57646.1| Foldase protein prsA 2 [Bacillus cereus BGSC 6E1]
gi|228693143|gb|EEL46856.1| Foldase protein prsA 2 [Bacillus cereus Rock3-42]
Length = 285
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 29/246 (11%), Positives = 84/246 (34%), Gaps = 20/246 (8%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + I++ + D + K K + L
Sbjct: 42 DFEKQLKDRYGKDMLYEMIAQDVITKKYKVSDDDVEKEVQKVKNQYGDQFTAVLENNRLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ K L + + E +EV K + K ++A +
Sbjct: 102 DEADFKKQIKFKLAMNEAIKKSVTE---------KEVKAHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ + + N + + + V + P
Sbjct: 153 IKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGRMAPEFETAAYKLKVGQISN-P 210
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS------VIAYLKSQYSVTV 618
+++ Y + K+T+ K ++ D+ + + + ++ + ++ + ++ +
Sbjct: 211 VKSPNGYHIIKLTDKK--ELKPYDEVKDSIRKNLEEERIADPTFSHKLLQKELKKANIKI 268
Query: 619 HDNLIQ 624
+D+ ++
Sbjct: 269 NDSELE 274
>gi|308061465|gb|ADO03353.1| peptidyl-prolyl cis-trans isomerase C [Helicobacter pylori Cuz20]
Length = 299
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 20/255 (7%), Positives = 60/255 (23%), Gaps = 14/255 (5%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
M + + K E+ + ++ + + L ++ +
Sbjct: 55 KSDFDMIKQRNPNFDFDKLKEKEKEALIEQAIRTALVENEAKTEKLDQTPEFKAMMEAVK 114
Query: 430 VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKD 489
A+ F + + + K + + +E
Sbjct: 115 KQALVE-----FWAKKQAEEVKKIQIPEKEMQDFYNANKDQ-----LFVKQEAHARHILV 164
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ +S Q + + + S N + + D
Sbjct: 165 KTEDEAKRIISEIDKQPKTKKEAKFIELANRDTIDPNSKNAQNGGDLGKFQKNQMAPDFS 224
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----S 605
F+ P++ Y + + + ++ + M+ + L
Sbjct: 225 KAAFALTPGNYTKTPVKTEFGYHIIYLISKDSPVTYTYEQAKPTIKGMLQEKLFQERMNQ 284
Query: 606 VIAYLKSQYSVTVHD 620
I L+ + ++
Sbjct: 285 RIEELRKHAKIVINK 299
>gi|266620058|ref|ZP_06112993.1| putative two-component sensor kinase YesM [Clostridium hathewayi
DSM 13479]
gi|288868361|gb|EFD00660.1| putative two-component sensor kinase YesM [Clostridium hathewayi
DSM 13479]
Length = 585
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 27/313 (8%), Positives = 78/313 (24%), Gaps = 31/313 (9%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQ--KVPFSSFI------- 57
+ + I L + +PF++ LF+ S + + + K+ +
Sbjct: 259 NRTMVLMMAIILFCILIPFVLI----FLFTGSFGRRIAVIRGEMHKISEGNLDIIPLFDG 314
Query: 58 --------NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE 109
+Q + I Q + + + L + ++ L
Sbjct: 315 TDELGLLFRDMQQTINNI-QNLNRQLYENQLDRQRLMNQ--QRMIEFQMLANQ------- 364
Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
+ ++ + + +++L + + D + ++
Sbjct: 365 INPHFLFNTLETIRMNASTHKDPDTAYIITQLGKMMRYSLQTKDQLVSLAQELAYTRSYL 424
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
+ + + D L + + + + + + E
Sbjct: 425 EIQHFRYREKISYEILVSDEITQDTYYLMPLLIQPLVENAISHGISPMDGPGFLLIHIEP 484
Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
+ + E + L+ E + +Y + T + N F
Sbjct: 485 VKDYLSIVIHDNGVGMDEGALQALRESVEAPEPEYTEDPVPTERHIGLRNVSSRIRLFYG 544
Query: 290 LKKGKKFIQLAEE 302
+ G E
Sbjct: 545 REYGVDIESRPME 557
>gi|256374815|ref|YP_003098475.1| hypothetical protein Amir_0666 [Actinosynnema mirum DSM 43827]
gi|255919118|gb|ACU34629.1| hypothetical protein Amir_0666 [Actinosynnema mirum DSM 43827]
Length = 313
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 28/108 (25%), Gaps = 13/108 (12%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
L V V L+ G + VG VP + + + L
Sbjct: 10 LTVAAVALLVSGCGSGPAKIGS---AAVVGDSVVPLADIQHQLQLVLAK------EPDVK 60
Query: 78 ERARSVGLDKKILDNLVS----GATLDQFIEDIGLEADHGRVWGEIAR 121
+ ++ D LV + + + G+ V +
Sbjct: 61 VALQRERKLDQVADTLVQIKVWHELIAKAAANEGVTVTEDEVAEAVES 108
>gi|167758785|ref|ZP_02430912.1| hypothetical protein CLOSCI_01127 [Clostridium scindens ATCC 35704]
gi|167663525|gb|EDS07655.1| hypothetical protein CLOSCI_01127 [Clostridium scindens ATCC 35704]
Length = 356
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 30/306 (9%), Positives = 74/306 (24%), Gaps = 24/306 (7%)
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
KE D++ + ++ A+ + G + + +V +K+ +
Sbjct: 37 KEITADIANFYARYTQAQYETYYAGYLGEDMWNSEAMEGQTYEESVKDSVLKQLETMILL 96
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK 436
+ + + + + + + + + + + +
Sbjct: 97 EEHMGDYEVSLSDKEKNAIESTAKEFDEANALEDKEKISGSLKTVKRV-----MTLMAIQ 151
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
+++ + D D A Y+ K K A
Sbjct: 152 QKMTEAIQADADTEVSDEEAAQKSMQYVLFPYTTKDADGKSVDLSDEEKAKVKSKAEDFA 211
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
E + ++F G T D ++ D I+
Sbjct: 212 EAAKTA------------EDFGAFATEQGVEASTIT----FDKDSSTPSADLIAAADKLG 255
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
V Y V KVT+ + + DL + +
Sbjct: 256 EGEVTEMIEAENGCY-VGKVTSLFDREATDTK--KQSIVNDRKTDLYTKTCEKWLKKADI 312
Query: 617 TVHDNL 622
V+ ++
Sbjct: 313 KVNKSV 318
>gi|57168199|ref|ZP_00367338.1| probable periplasmic protein Cj1289 [Campylobacter coli RM2228]
gi|305431656|ref|ZP_07400825.1| SurA domain protein [Campylobacter coli JV20]
gi|57020573|gb|EAL57242.1| probable periplasmic protein Cj1289 [Campylobacter coli RM2228]
gi|304445251|gb|EFM37895.1| SurA domain protein [Campylobacter coli JV20]
Length = 271
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 20/190 (10%), Positives = 53/190 (27%), Gaps = 25/190 (13%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + F+ + + + ++ V V ++ + + K
Sbjct: 4 ILLSFVFFI--SLTHANTINAIAVVVDKEPITTYDIEQTMKTL----------------- 44
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L L++ I+ G+ + I + NK S + F
Sbjct: 45 --NIPKNQALGILINEKMELSQIKQFGIYTSELELDNAIGKMLA----QNKISLEDFKRD 98
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L +G N +++ ++ K + + + K F N
Sbjct: 99 LQAKGQNYEQFRSNFKKDFEKRKLYEKIASTAKTDFSDEGAKKFFEQNKNKFTLFTEINV 158
Query: 201 HVPAIADPSN 210
++ + +
Sbjct: 159 NIYRSNNAQD 168
>gi|265754204|ref|ZP_06089393.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
gi|263234913|gb|EEZ20468.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
Length = 427
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 41/468 (8%), Positives = 116/468 (24%), Gaps = 67/468 (14%)
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN---AVLTQWFEKYKDNYR 225
+GG + R ++ ++ + + + L+ + +
Sbjct: 11 IGGEPVKRTEFEYYFRKSHKHTPDSFLSSFINYKLKVHYAHDTGIDTLSAFRRQMAWYRG 70
Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAE-YEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
K + + + S LQ + + Q ++ D
Sbjct: 71 KLLKKYLVDAEKEEQTVRQLYLRSEQRLQTNDWIRIAHISKYLPQNVGRQDELRVLQQMD 130
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFS--LAKKGDFTPVI 342
+ +L+ G F LA + ++G + ++ + I +K +
Sbjct: 131 SVYAALQGGADFSALACRYSDDTTCKNMGGLLPWMPVNKNMQEWIDKLASLEKNKISAPF 190
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
+ G I + KP + E+ +E E T +
Sbjct: 191 YSPMGIHIIKWIDRKPGI-------------------SFEEKREQLLNYLEKNGNRTWQE 231
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + + ++ + + + LL +
Sbjct: 232 LSAGQRERLAFQVQEL-----------------HDGLLAACLSQKYQSGDGTWQESDLEH 274
Query: 463 YMWVQIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
+ + V + + S+ ++ +
Sbjct: 275 FFKQHKSDYSWDLPHYRGAVIHCKDKKMASAIKKQLKRKPVSQWEDVLHRLIGNASFPKA 334
Query: 520 IGKNLGASLLTTNQINRMDNENKFF-GYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+ + T I+++ + F + VF ++ K
Sbjct: 335 RIEAGVFQIGTNRYIDKLVFKCGDFQPDPALPYVFVMGKKLKKG---------------- 378
Query: 579 SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + + D+ + LK +Y V ++ +++
Sbjct: 379 -----PESYEDVKDAVIKDYQAVYQDAWLKDLKRKYKVEINQEVLKTV 421
>gi|171463490|ref|YP_001797603.1| hypothetical protein Pnec_0772 [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193028|gb|ACB43989.1| hypothetical protein Pnec_0772 [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 137
Score = 43.3 bits (99), Expect = 0.12, Method: Composition-based stats.
Identities = 10/84 (11%), Positives = 24/84 (28%), Gaps = 16/84 (19%)
Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
V +V + + + G E L + I ++L++ + Q
Sbjct: 42 VATVNGSPITQGLLNLNVRALTNQ-----GQKDTPE------LRQAIKEDLINKELIAQE 90
Query: 103 IEDIGLEADHGRVW--GEIARSPL 124
+G + +I +
Sbjct: 91 ATKLGYA---KEIDFPDQITQLKQ 111
>gi|313143878|ref|ZP_07806071.1| cell binding factor 2 [Helicobacter cinaedi CCUG 18818]
gi|313128909|gb|EFR46526.1| cell binding factor 2 [Helicobacter cinaedi CCUG 18818]
Length = 296
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 33/132 (25%), Gaps = 7/132 (5%)
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD---NENKFFGYDGIS 550
KT E +L K F ++ + N D + D +
Sbjct: 163 KTESEAKDIIKELDKAGKKAESKFIELANAKSTDPASKQAKNGGDLGTFQRNVMHPDFAN 222
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSV 606
+ P++ Y V + + K + + +
Sbjct: 223 AASNLKPGTYTQEPVQTPFGYHVIYLIKKSEPKIIPYNEAKKIIEEQIKMQNVQGGMMQK 282
Query: 607 IAYLKSQYSVTV 618
I L+ + + +
Sbjct: 283 IQALREKAKIQI 294
>gi|194289564|ref|YP_002005471.1| peptidylprolyl isomerase; exported protein [Cupriavidus taiwanensis
LMG 19424]
gi|193223399|emb|CAQ69404.1| putative Peptidylprolyl isomerase; putative exported protein
[Cupriavidus taiwanensis LMG 19424]
Length = 264
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 26/181 (14%), Positives = 66/181 (36%), Gaps = 3/181 (1%)
Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
A ++ + + + + K S+ EL+ +Y+K K ++ +
Sbjct: 69 VQEANKRGLTQRDDVQEQLEQARLNVLAGAVFEDYVKTHGASDAELRKQYDKIKSQFGNG 128
Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG---SFSKEYIPDVS 324
+ ++ + +A +K G KF A+ K + G ++
Sbjct: 129 KEYHARHILVEKEADAKAIIAKIKGGAKFEDQAKAASKDPGSAANGGDLDWANSSSYVPE 188
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
+ ++ L K + FG+ I + +++ + SF+EVK + + + ++
Sbjct: 189 FSAAMTGLKKGQMTDTPVKTQFGWHIIELVDVRDAKIPSFEEVKPQLTQMLMGDQNWQRE 248
Query: 385 K 385
+
Sbjct: 249 Q 249
Score = 41.0 bits (93), Expect = 0.66, Method: Composition-based stats.
Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 15/100 (15%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
+ F + + A + + V + +P + + G + E
Sbjct: 5 VLSFSLAAVLAAGSLPAIAQNAAVVNGKAIPSAKLDK--------LIAGTGQPDSPE--- 53
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
L + + L+ L Q GL V ++ +
Sbjct: 54 ---LRTRARNMLIDRELLVQEANKRGLTQRDD-VQEQLEQ 89
>gi|148825262|ref|YP_001290015.1| stationary-phase survival protein SurA [Haemophilus influenzae
PittEE]
gi|148715422|gb|ABQ97632.1| stationary-phase survival protein SurA [Haemophilus influenzae
PittEE]
Length = 311
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 185 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSK 244
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 245 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 303
Query: 614 YSVT 617
++
Sbjct: 304 ANIQ 307
Score = 37.5 bits (84), Expect = 7.8, Method: Composition-based stats.
Identities = 18/154 (11%), Positives = 47/154 (30%), Gaps = 27/154 (17%)
Query: 20 VLFVPFLIWGLSDALFSVSGS---STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
+ FL+ L F+ V +V V S +G +
Sbjct: 4 FILKSFLLATLGCVAFTSMAQAEERVVATVDGIPVLESQV-----------RANMGKKGD 52
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+ +D ++ + + +++ G++ D + + + +G ++
Sbjct: 53 ---------RQSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNG----LTYGQ 99
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
F+ L +GI+ + + V +
Sbjct: 100 FLDALDYQGISLNAFRQQIANQMVMGAVRNKAIQ 133
>gi|224437416|ref|ZP_03658385.1| hypothetical protein HcinC1_05580 [Helicobacter cinaedi CCUG 18818]
Length = 281
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 33/132 (25%), Gaps = 7/132 (5%)
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD---NENKFFGYDGIS 550
KT E +L K F ++ + N D + D +
Sbjct: 148 KTESEAKDIIKELDKAGKKAESKFIELANAKSTDPASKQAKNGGDLGTFQRNVMHPDFAN 207
Query: 551 QVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSV 606
+ P++ Y V + + K + + +
Sbjct: 208 AASNLKPGTYTQEPVQTPFGYHVIYLIKKSEPKIIPYNEAKKIIEEQIKMQNVQGGMMQK 267
Query: 607 IAYLKSQYSVTV 618
I L+ + + +
Sbjct: 268 IQALREKAKIQI 279
>gi|153951819|ref|YP_001397624.1| hypothetical protein JJD26997_0433 [Campylobacter jejuni subsp.
doylei 269.97]
gi|152939265|gb|ABS44006.1| conserved hypothetical protein [Campylobacter jejuni subsp. doylei
269.97]
Length = 271
Score = 43.3 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 57/188 (30%), Gaps = 25/188 (13%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + F + + + + ++ V V ++ + + K
Sbjct: 4 ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTMKALKID-------------- 47
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
K L L++ ++ +G+ + + I + NK + + F +
Sbjct: 48 -----RNKALGILINEKMEISQMKQLGIVVNDLELDDAINKM----LTQNKTTLNAFKAN 98
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L + + +++ ++ K L + + + K F + N
Sbjct: 99 LKSKNQSYEQFRANFKKDLEKRKLYEKISNMAKTDFSDDGAKKFFEQNKDKFTFYTQINA 158
Query: 201 HVPAIADP 208
++ +P
Sbjct: 159 NIYLSNNP 166
>gi|302387550|ref|YP_003823372.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
saccharolyticum WM1]
gi|302198178|gb|ADL05749.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
saccharolyticum WM1]
Length = 323
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 30/259 (11%), Positives = 74/259 (28%), Gaps = 13/259 (5%)
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI--DLPLV 418
S V + I + + L + E + K++++ V
Sbjct: 44 PQSMVIVATERNRYQEIYTSQIWGVDLPDGQTFETYLVDQVKEFLQEMKMMNLLARNKGV 103
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRK 478
+ + A+ + L +D + + E + +
Sbjct: 104 TLTSAEKEEVRKASEEFFSSLTKEDISYMGAAEEDVRTMYEEYYLSNKVVDELTKDMNLE 163
Query: 479 LEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD 538
+ + V + ++A +++L+ EG +F + + ++ R +
Sbjct: 164 ISDSEAKVIVV---EQIVMSDEAEAGEVLLKAGSEGADFSALAREYSEDGSVERKVGRGE 220
Query: 539 NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM 598
+ FS + G Y++ V + + + L Q
Sbjct: 221 D-----PGPFEDAAFSLSAGQISQVVENKGKYYIIRCVNDY---DEDATQERKAGLYQKR 272
Query: 599 NKDLLDSVIAYLKSQYSVT 617
K+ D + + K + VT
Sbjct: 273 KKEAFDQIYSQFKQENPVT 291
>gi|149280301|ref|ZP_01886423.1| peptidyl-prolyl cis-trans isomerase (survival protein) [Pedobacter
sp. BAL39]
gi|149228990|gb|EDM34387.1| peptidyl-prolyl cis-trans isomerase (survival protein) [Pedobacter
sp. BAL39]
Length = 454
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 61/495 (12%), Positives = 128/495 (25%), Gaps = 81/495 (16%)
Query: 16 IFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV 75
+ L FL + S V +G + S + Q +
Sbjct: 6 VVAGGLICLFL----NTQAQRQSVDKVVAVLGSNVILLSDINQQYAQY-----------L 50
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
NS + + IL L++ L Q E + D +V E+ + + +
Sbjct: 51 NSGNPSNESVKCLILRELLTTKLLKQQAEIDSVMVDDSQVDEEVDQRMRYQIQ-----RA 105
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
RL + + +L E +
Sbjct: 106 GGEERLEQ-----------------------------FLNRSILQYKDEIRPEIKEQMIS 136
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
++ + + ++F+ YK + S ++
Sbjct: 137 RKMKGNITQDVSVTPLEVKKYFDSYKKD-------------------------SLPDIPT 171
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI-SLGS 314
E+E + + +Q + +S + + E S D LG
Sbjct: 172 EFEVGEIVLHPTLTKAEKQRFYDKIDALRLRVKSGEDFAFLAKSYSEDPGSAPDGGDLGF 231
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
F + + + K G+ +PV GY I V + + + +
Sbjct: 232 FDRAQMVKE--FTAWAFKLKAGEISPVFETEHGYHILQVIERRGEQVQARHILIRPQNTP 289
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIP 434
+ + YK + ++ + K + ++ +A
Sbjct: 290 QSMERLKLHADSIYKNIVSKKVPFSTAASLYSDNKESQYNGGMILYADNQTARTTFIPAD 349
Query: 435 YKEQLLFRVFGKDDPLSKDHTV----ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDW 490
+ +F V + V Y + +K IP LE+ K+
Sbjct: 350 KLDPKVFTVVDTMKVGAISEPVAFTGDDGKEGYKILFLKSKIPPHKGNLEQDYAKFKEKA 409
Query: 491 KTVKTAEEVSSKANQ 505
+ K +S +
Sbjct: 410 QEAKVDRVLSEWFEK 424
>gi|153004697|ref|YP_001379022.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
gi|152028270|gb|ABS26038.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
Length = 584
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 8/189 (4%)
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE-EVL---TDVKKDWKTVKTAEE 498
G DD +A + +++ EV + +++W+
Sbjct: 125 AIGLDDLEEVKKPIADNKERIRFDLVRKHASKDVTVDPAEVKRLYDEARREWRIRSVFFG 184
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVE 558
++A + + G+ F + K + + +V
Sbjct: 185 QEAEAKKFTAALAAGGE-FDALAKKAAEDKVARSGEGSQWIRVSEIQVSVAKEVEKLAPG 243
Query: 559 MVKCFPIENGLSYVVFKVT-NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
P++ G + V ++ V + K S + L + A LK Q V
Sbjct: 244 K-ATAPLKAGPGWTVVRLDEKRSVEDEALRAKIESTVRGEAVAKALQAYYAKLKKQL-VR 301
Query: 618 VHDNLIQRY 626
+ L++
Sbjct: 302 IDTKLLRAV 310
>gi|319900080|ref|YP_004159808.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
helcogenes P 36-108]
gi|319415111|gb|ADV42222.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
helcogenes P 36-108]
Length = 518
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 53/510 (10%), Positives = 129/510 (25%), Gaps = 35/510 (6%)
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
LA + + K + R++ ++ + ++ K + V
Sbjct: 17 LATAVAQDPVLMRINGKDVLRSEFEYVYNKNNKSASARQVMPKNYVGTFIDYKLKVAEAE 76
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
+ + + + + Y + + + +
Sbjct: 77 TAGMDTT----SAFRDKLEARRRWSSISYLVDEETEERIAHRFYNRLKFARQAGKVRVSH 132
Query: 261 KEKY-FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
KY + + + K F + S+ +
Sbjct: 133 IFKYLSQNISGHALHEIEAKMDSIYQMLRKQGKNADFDACVVDFSDEKSEFWVSWLQM-- 190
Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
+ + I + G+ + G I V + F+EVK+ I +
Sbjct: 191 ---PAEFEDIVFGMQVGEISHPFFTPQGIHIVKVLERRE--LPPFEEVKEGIMHSRTYRY 245
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV------DFAGKDVKGKEVAAI 433
++ + + ++ + G++ VA
Sbjct: 246 EMDEEMDALVEKLKKEYHYIPDQAGMDELISKGKTSRVLFIFGGKTYTGREFTRFAVAHP 305
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVAL--PDGSYMWVQIKESIPARDRKLEEVLTDVKKD-- 489
+ L K ++ + P+ + KE + + EV +K D
Sbjct: 306 GGVRRQLREFVMKSVLDYENSHLEQKYPEFRLLMQAYKEELLLHEITDREVSERIKMDEA 365
Query: 490 -WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
K + + + + K + L + MD F +G
Sbjct: 366 GLKAYFDTHRSDYYWKEPRYKGIVLHCTTKRVAKQVRKFLKQIPESEWMDAIRLTFNAEG 425
Query: 549 ISQV------FSGPVEMVKCFPIENGL------SYVVFKVTNSKVGPVQEKDKFISYLTQ 596
+V F+ + G S+ + KV +E + L+
Sbjct: 426 TPEVQAEQGLFAYGDNAYVDALVFKGQEATPILSFPFTAILGRKVKGPEEFHEVSERLSV 485
Query: 597 MMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L +A L++ V ++ +++
Sbjct: 486 DYRNYLEQRWVAKLRASAKVEINQEVLKTV 515
>gi|295688302|ref|YP_003591995.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
ATCC 21756]
gi|295430205|gb|ADG09377.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Caulobacter segnis
ATCC 21756]
Length = 329
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 14/150 (9%), Positives = 45/150 (30%), Gaps = 1/150 (0%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ E + ++ L+ ++ + + ++A + V + G +F +
Sbjct: 140 VTEDAIRKLYAEQQKLSKRSEEIRARQIIVGSQAEA-ESVKKLLATGASFDALAMERSTD 198
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
T + + + P +V+ +V + +V
Sbjct: 199 QATRFNGGDLGYFTLDVMPEPYGVALKDAQKGALVGPFAAEGGWVLVRVEDKRVEEPITL 258
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + + + D + ++ L+ V
Sbjct: 259 EAARPQIVRFLTYDQVRDILEKLRGSAKVE 288
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
G + V V Q + S + G ++ S + ++ LD ++
Sbjct: 47 GDTAVARVNGQVIWASDVKRE---AVAQGLISEGEPLD----ISSEVFRQRLDEVIDQKL 99
Query: 99 LDQFIEDIGL 108
L +
Sbjct: 100 LAAEAMKRKI 109
>gi|75762890|ref|ZP_00742701.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228899846|ref|ZP_04064091.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 4222]
gi|74489622|gb|EAO53027.1| Peptidyl-prolyl cis-trans isomerase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228859750|gb|EEN04165.1| Foldase protein prsA 2 [Bacillus thuringiensis IBL 4222]
Length = 285
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 30/264 (11%), Positives = 91/264 (34%), Gaps = 20/264 (7%)
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
K + A T ++ + K+L++ + +++ + + +
Sbjct: 21 CGQKNESATVATATDSTVTKDDFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDEEVNKEV 80
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
K K+ +K+ L ++ L + I E ++V
Sbjct: 81 EKVKKQYGDQFKKVLENNGLKDEEDFKNQIKFKLAMNEAIKKSITE---------KDVKD 131
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKF 543
K + K ++A ++ + G +F ++ K LL+ ++ + +
Sbjct: 132 HYKPEIKASHILVSDENEAKEIKSKLD-AGASFEELAKQESQDLLSKDKGGDLGYFNSGT 190
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD-- 601
+ + + V + P+++ Y V K+T+ K ++ D+ + + + ++
Sbjct: 191 MAPEFETAAYKLNVGQISN-PVKSSNGYHVIKLTDKK--DLKPYDEVKKSIRKNLEEERI 247
Query: 602 ----LLDSVIAYLKSQYSVTVHDN 621
++ + ++ ++D+
Sbjct: 248 ADPIFSKKLLQEELKKANIKINDS 271
>gi|283954909|ref|ZP_06372425.1| hypothetical protein C414_000260181 [Campylobacter jejuni subsp.
jejuni 414]
gi|283793749|gb|EFC32502.1| hypothetical protein C414_000260181 [Campylobacter jejuni subsp.
jejuni 414]
Length = 271
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 57/188 (30%), Gaps = 25/188 (13%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + F + + + + ++ V V ++ + + K
Sbjct: 4 ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTMKVLKID-------------- 47
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
K L L++ ++ +G+ + + I + NK + + F +
Sbjct: 48 -----RNKALGILINEKMEISQMKQLGIVVNDLELDDAINKMLA----QNKTTLNAFKAN 98
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L + + +++ ++ K L + + + K F + N
Sbjct: 99 LKSKNQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINV 158
Query: 201 HVPAIADP 208
++ +P
Sbjct: 159 NIYLSNNP 166
>gi|1314566|gb|AAC44059.1| unknown [Sphingomonas sp. S88]
Length = 300
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 8/80 (10%), Positives = 22/80 (27%), Gaps = 11/80 (13%)
Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
G + V SV ++ + ++ + + A +
Sbjct: 19 GCGSKEGKLDKGQVVASVDGDEITIFELNAEVQAT------QVPQGTDRKLAE-----QM 67
Query: 89 ILDNLVSGATLDQFIEDIGL 108
L ++ L ++ + L
Sbjct: 68 ALQRIIERKILAKYAREQKL 87
>gi|331701588|ref|YP_004398547.1| Foldase protein prsA [Lactobacillus buchneri NRRL B-30929]
gi|329128931|gb|AEB73484.1| Foldase protein prsA [Lactobacillus buchneri NRRL B-30929]
Length = 298
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 37/299 (12%), Positives = 76/299 (25%), Gaps = 40/299 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ W+ I L + + F + TV + K+ S++ +S K
Sbjct: 6 KKWL--IVLAGIMMSFTLAACGS--------KTVATTNGGKITESAYYSSLKSTSSG--- 52
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
K++L ++ L+ + G + +V E A+ +G
Sbjct: 53 -----------------KQVLQQMILNKVLE---KQYGKDVKDSQVNSEFAKYKKQYGSS 92
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
F S L + G+ + D L V V ++ +
Sbjct: 93 -------FNSVLQQNGMTASQLKDSIRSNLLLKQAVKDNVKITDAQLETQFKSYQPKVTV 145
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
+ + + +KY + + +
Sbjct: 146 NQILVSKKSTAEKVISELKDGKSFSSLAKKYSTDTATKNKGGRIAAFDNTNTSLDANFKK 205
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
E K + V Q+V K + +S K + + S
Sbjct: 206 AAFKLKNGEYTKTPVKTQYGYQVIQMVNHPSKGTWKQHESELKDQIVTSKMSDSNTLHS 264
>gi|172064366|ref|YP_001812017.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria MC40-6]
gi|171996883|gb|ACB67801.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
ambifaria MC40-6]
Length = 282
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 17/173 (9%), Positives = 46/173 (26%), Gaps = 21/173 (12%)
Query: 466 VQIKESIPARDRKLEEVL---TDVKKDWKTVKTAEEV----SSKANQLVLEYSKEGKNFR 518
+ +K++I +V ++ + + + VL K G+ F
Sbjct: 108 LYLKDNIKPSPVTDAQVKARYDEIVGSLGKEEVKPRIIVVKDAATAATVLAQLKAGQTFE 167
Query: 519 DIGKNLGASLLTTNQ---------INRMDNENKFFGYDGISQVFSGPVEMVKCFPIE-NG 568
+ + + + ++ + + P V I
Sbjct: 168 ALARQYSQAPTAGAGGELPWVSFKMPLVEGNTQGLPLPVAQAMTKLPAGGVTADSIPLGN 227
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVT 617
+ + K+ + V D S + Q + + ++ L +
Sbjct: 228 GARAIVKIDAKRPTQVPAYDTAQSTIRQQLQALAFEKATAELVGGLLKDAKIQ 280
Score = 41.8 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 10/94 (10%), Positives = 31/94 (32%), Gaps = 19/94 (20%)
Query: 20 VLFVPFLIWGLS-----DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+L + W ++ +A + + +V +V + + +
Sbjct: 8 ILIATAIAWQMALPVQAEAQSASLPAGSVATVNGTPITDAEVNAVLQ------------- 54
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
S++ + + + I + L++ + Q E
Sbjct: 55 -ASKQPDTPQIRQAIKNQLIAHVLIQQAAEKAKY 87
>gi|260582276|ref|ZP_05850069.1| stationary-phase survival protein SurA [Haemophilus influenzae
NT127]
gi|260094644|gb|EEW78539.1| stationary-phase survival protein SurA [Haemophilus influenzae
NT127]
Length = 313
Score = 43.3 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 187 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSK 246
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 247 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 305
Query: 614 YSVT 617
++
Sbjct: 306 ANIQ 309
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 17/163 (10%), Positives = 50/163 (30%), Gaps = 29/163 (17%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ ++ K FL+ ++ A V +V + S
Sbjct: 2 KMKKFILKSFLLATLGCVAFTSMAQA-----EERVVATVDGIPILESQV----------- 45
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+G + + +D ++ + + +++ G++ D + + + +G
Sbjct: 46 RANMGKKGD---------RQSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNG 96
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ F+ L +GI+ + + V +
Sbjct: 97 ----LTYGQFLDALDYQGISLNTFRQQIANQMVMGAVRNKAIQ 135
>gi|291525353|emb|CBK90940.1| PPIC-type PPIASE domain [Eubacterium rectale DSM 17629]
gi|291527060|emb|CBK92646.1| PPIC-type PPIASE domain [Eubacterium rectale M104/1]
Length = 329
Score = 42.9 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 12/173 (6%), Positives = 45/173 (26%), Gaps = 10/173 (5%)
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ Y Q EV + + K + A+ + + +
Sbjct: 142 SDMESAYEHYAIAQKL-YNSLSKGVDTEVSDEDARVIHIQKIFVKSKESADSVSQKLLSK 200
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
++F + T + + + F + Y +
Sbjct: 201 -EDFAAVASGSSEDSQTE-----LYAAKGTLPQEVEAVAFELGDGETSDMISTDDGYYFI 254
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++ ++ ++ + Q ++ + + + +++++L
Sbjct: 255 KCISKL---DREKTEQNKVTILQKRQQEQFNDDYEHFVKKAGFSLNNDLWDSI 304
>gi|317050625|ref|YP_004111741.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
indicum S5]
gi|316945709|gb|ADU65185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfurispirillum
indicum S5]
Length = 280
Score = 42.9 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 10/124 (8%), Positives = 34/124 (27%), Gaps = 10/124 (8%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + +V ++++ + + + ++ ++LD LV
Sbjct: 26 SDTVLATVEKRQITQQDLNRAIQSLPDELRAQVRSN--------PEFKAQLLDELVRQEM 77
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ + + V + N F + ++ + KE+ +
Sbjct: 78 VYHEAQRQNFQ--ENEVVRNRLKLLERELMINAFLEEYLSRNVSVSEQDLKEFYERNKAR 135
Query: 159 LSRT 162
Sbjct: 136 FVTQ 139
>gi|145632724|ref|ZP_01788458.1| thymidylate kinase [Haemophilus influenzae 3655]
gi|145634545|ref|ZP_01790254.1| stationary-phase survival protein SurA [Haemophilus influenzae
PittAA]
gi|229844382|ref|ZP_04464522.1| stationary-phase survival protein SurA [Haemophilus influenzae
6P18H1]
gi|144986919|gb|EDJ93471.1| thymidylate kinase [Haemophilus influenzae 3655]
gi|145268090|gb|EDK08085.1| stationary-phase survival protein SurA [Haemophilus influenzae
PittAA]
gi|229812631|gb|EEP48320.1| stationary-phase survival protein SurA [Haemophilus influenzae
6P18H1]
Length = 311
Score = 42.9 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 185 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSK 244
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 245 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 303
Query: 614 YSVT 617
++
Sbjct: 304 ANIQ 307
>gi|33152289|ref|NP_873642.1| peptidyl-prolyl cis-trans isomerase [Haemophilus ducreyi 35000HP]
gi|33148512|gb|AAP96031.1| survival protein SurA-like protein [Haemophilus ducreyi 35000HP]
Length = 317
Score = 42.9 bits (98), Expect = 0.14, Method: Composition-based stats.
Identities = 11/123 (8%), Positives = 38/123 (30%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ +K ++ + F K ++ + +++ +
Sbjct: 190 KAKAKLMRIAADIKAGKTTFEQAAKANSIDYISAADGGDLGYNFLDIYDPTFAKIANKAK 249
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGP--VQEKDKFI-SYLTQMMNKDLLDSVIAYLKSQY 614
+ P ++ + + KVT ++ ++F L +++ + L+S
Sbjct: 250 QNQISAPFKSQFGWHILKVTATQKADRTEDSYNQFAYELLANQQGQEIAKDWVKILRSSA 309
Query: 615 SVT 617
+
Sbjct: 310 DIQ 312
>gi|198276169|ref|ZP_03208700.1| hypothetical protein BACPLE_02358 [Bacteroides plebeius DSM 17135]
gi|198270981|gb|EDY95251.1| hypothetical protein BACPLE_02358 [Bacteroides plebeius DSM 17135]
Length = 467
Score = 42.9 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 40/406 (9%), Positives = 105/406 (25%), Gaps = 36/406 (8%)
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
++ + E A + + I +Q V + K+
Sbjct: 64 QYEGRRFDGDPYCVIPEELAVQKLFLHQAEIDSIEVSDQEVLQQVETRISWLTDQIGSKE 123
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
++ + + L ++ + + I K + F +
Sbjct: 124 KLEEYYNKTSTQIREMLRENIRDGLTVQEMQKKIVGDIK--LTPAEVRNYFSKLPQDSIP 181
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
P+ ++ + I + +++++ R+ + +++ + + +
Sbjct: 182 FVPTQVEVQIITREPKIKEEEIERVKKELRDFTDRINKGETTFSTLARMYSEDPGSARRG 241
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
F G+ + VF DP G ++ I++
Sbjct: 242 GEYGFTGRG---------ELTPEFANVVFNLTDPKKISKVFETEYGYHIAQLIEKRGDRV 292
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG----------KNLG 525
+ + V K E +K + L + K F + N G
Sbjct: 293 SYRHILIKPRV-----DEKEIEAELNKLDTLANDIRKGKVTFDEAATWVSQDKDTRNNHG 347
Query: 526 ASLLTTNQINRM--DNENKFFGYDGISQVFSGPVEMVKC----FPIENGLSYVVFKVTNS 579
+R + V + V + + K+ N
Sbjct: 348 LLANPQTSTSRFEMQQLAGLISQEVAKTVEGMQIGEVSKPFTMINAKGKEVCAIVKLKNR 407
Query: 580 ----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K ++ + +T +++ L I + V ++ +
Sbjct: 408 IDGHKATISEDYQRLKDIVTANRSEEKLQKWIVEKQKNTYVRINPS 453
Score = 41.4 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 17/183 (9%), Positives = 46/183 (25%), Gaps = 17/183 (9%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
R+ + L +L + G + V VG + + S N
Sbjct: 8 RQKMNKLIMTGVLAILL---ALTGTVPAVAQDNVIDEVVWVVGDEAILKSDVENE----- 59
Query: 65 GMISQKI-GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
++ + G + + + + L E +E V ++
Sbjct: 60 -RLNAQYEGRRFDGDPYCVIP------EELAVQKLFLHQAEIDSIEVSDQEVLQQVETRI 112
Query: 124 LFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
+ + + ++ L+ ++ VG ++ + +
Sbjct: 113 SWLTDQIGSKEKLEEYYNKTSTQIREMLRENIRDGLTVQEMQKKIVGDIKLTPAEVRNYF 172
Query: 184 RFY 186
Sbjct: 173 SKL 175
>gi|114567543|ref|YP_754697.1| hypothetical protein Swol_2032 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338478|gb|ABI69326.1| hypothetical protein Swol_2032 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 265
Score = 42.9 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 15/169 (8%), Positives = 45/169 (26%), Gaps = 9/169 (5%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + + S++ W++ ++ + A+ IL++L+ +
Sbjct: 94 VVARVNGETITASNWY--WEKINKILQAEFNNKSIPSDAK-------ILNDLIETKVISS 144
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+G+ ++ IA + + + ++
Sbjct: 145 AARSLGIYPPEDQIKAYIADQQKYMEILKPEEITILIQTWGISEDKYFLLMEDRFADSLA 204
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
G+++ + +Q D + + S
Sbjct: 205 KINWGVYLEKYKDEAQEDEQGYVAKSFTWIGDDRIKPLLEKAQVEITSE 253
>gi|319784426|ref|YP_004143902.1| SurA domain [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170314|gb|ADV13852.1| SurA domain [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 309
Score = 42.9 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 15/209 (7%), Positives = 47/209 (22%), Gaps = 21/209 (10%)
Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE 104
V V + + + +K G ++ +
Sbjct: 36 VVNDIPVTTGDI--AHRAAFLKLQRKKGDAG---------------QEMIDQTLRMAEAK 78
Query: 105 DIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+G+ +V R NK + + G+ + + + ++
Sbjct: 79 RLGIRISDAQVDAAYQR----FASSNKMQLSQLDGVMEKSGVTKSHFKEFIRAQMAWNQA 134
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ + + +Q + + + A +
Sbjct: 135 LSARYRSGDGTGAVSEQDLVRKMLEKGGAKPSATEYMLQQVIFVVPAAERSATLGKRKRE 194
Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDEL 253
R + + I+++ +L
Sbjct: 195 ADAMRARFNGCNTTREFAKGLIDVTVRDL 223
>gi|307319050|ref|ZP_07598480.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
gi|306895157|gb|EFN25913.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
Length = 289
Score = 42.9 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 52/137 (37%), Gaps = 10/137 (7%)
Query: 487 KKDWKTVKTAEEVSSKANQLVLEYSKEGKN-FRDIGKNLGASLLTTNQINRMDNENKFFG 545
K+ + + + +++A ++ E + G++ LG +++ + FG
Sbjct: 139 KQIYFDPEHRADAAAEAKTVLTELNALGESEPASDRLLLGNRFDDASEL----AISGMFG 194
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL----TQMMNKD 601
D +VF+ + P+++G + V + + + ++ +
Sbjct: 195 ADFAREVFAVEPGQWRG-PVKSGYGLHLVFVMQRTATTPKPFETVKGDVLAEWRRLKQTE 253
Query: 602 LLDSVIAYLKSQYSVTV 618
L +A L+ +Y V +
Sbjct: 254 LSRDFLAALRKKYGVEL 270
>gi|226224827|ref|YP_002758934.1| post-translocation molecular chaperone [Listeria monocytogenes
Clip81459]
gi|254825217|ref|ZP_05230218.1| rotamase [Listeria monocytogenes FSL J1-194]
gi|254853343|ref|ZP_05242691.1| export protein [Listeria monocytogenes FSL R2-503]
gi|254992110|ref|ZP_05274300.1| post-translocation molecular chaperone [Listeria monocytogenes FSL
J2-064]
gi|255520683|ref|ZP_05387920.1| post-translocation molecular chaperone [Listeria monocytogenes FSL
J1-175]
gi|300763971|ref|ZP_07073967.1| protein export protein [Listeria monocytogenes FSL N1-017]
gi|225877289|emb|CAS06003.1| Putative post-translocation molecular chaperone [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258606707|gb|EEW19315.1| export protein [Listeria monocytogenes FSL R2-503]
gi|293594463|gb|EFG02224.1| rotamase [Listeria monocytogenes FSL J1-194]
gi|300515312|gb|EFK42363.1| protein export protein [Listeria monocytogenes FSL N1-017]
Length = 293
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 29/231 (12%), Positives = 67/231 (29%), Gaps = 2/231 (0%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + E ++ I + +DV K V
Sbjct: 34 DVTQDELYDAMKDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLA 93
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ K L + + + D+ L++ + D +KA +
Sbjct: 94 QSGLTEKSFKSQLKYNLLVQKATEANTDTSDKTLKKYYETWQPDITVSHILVADENKAKE 153
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
V + K+G F D+ K T + ++ ++ + P
Sbjct: 154 -VEQKLKDGAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAP 212
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + ++ EKDK + + ++ +++ LK +Y
Sbjct: 213 VKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263
>gi|27379215|ref|NP_770744.1| hypothetical protein bll4104 [Bradyrhizobium japonicum USDA 110]
gi|27352366|dbj|BAC49369.1| bll4104 [Bradyrhizobium japonicum USDA 110]
Length = 313
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 20/296 (6%), Positives = 65/296 (21%), Gaps = 29/296 (9%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ VV V + ++ + +++++ L+
Sbjct: 31 AQNIVVMVNGDPITDFDIDQR-------------SKLDLLTTQKTPSRQEVINELIDDRV 77
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ + G++ + + + + D L +G+ +
Sbjct: 78 KLKEGKKYGVDPGVSDINQSFEGM----AQRMRITTDQLTKSLEVKGVRPETLKARMKSE 133
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ T +V + + P + + E
Sbjct: 134 MVWTSLVRGRFKEKLMVGERDVAQAVQAQAGDKLQIEGTEYKMQPIVLIVPRGSSPAFQE 193
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ S + + + + + E T +
Sbjct: 194 TRMKEAEQYRSRVASCEEANSLFRSTPNATIRESVTKTTAELPEALRKVLDDTPIGHLTA 253
Query: 279 NQ------------KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
+ + KK + ++ +E+ + L K + +
Sbjct: 254 PEVTKAGIEMVVLCSRKPTMIDTPKKREVREKMYQEKYEKTQKAYLDELRKAAMIE 309
>gi|46908453|ref|YP_014842.1| protein export protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094429|ref|ZP_00232114.1| protein export protein [Listeria monocytogenes str. 4b H7858]
gi|254931668|ref|ZP_05265027.1| rotamase [Listeria monocytogenes HPB2262]
gi|67461025|sp|Q71XE6|PRSA2_LISMF RecName: Full=Foldase protein prsA 2; Flags: Precursor
gi|46881724|gb|AAT05019.1| protein export protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017195|gb|EAL08043.1| protein export protein [Listeria monocytogenes str. 4b H7858]
gi|293583223|gb|EFF95255.1| rotamase [Listeria monocytogenes HPB2262]
gi|328472118|gb|EGF42993.1| post-translocation molecular chaperone [Listeria monocytogenes 220]
gi|332312671|gb|EGJ25766.1| Foldase protein prsA 1 [Listeria monocytogenes str. Scott A]
Length = 293
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 29/231 (12%), Positives = 67/231 (29%), Gaps = 2/231 (0%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + E ++ I + +DV K V
Sbjct: 34 DVTQDELYDAMKDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLA 93
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ K L + + + D+ L++ + D +KA +
Sbjct: 94 QSGLTEKSFKSQLKYNLLVQKATEANTDTSDKTLKKYYETWQPDITVSHILVADENKAKE 153
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
V + K+G F D+ K T + ++ ++ + P
Sbjct: 154 -VEQKLKDGAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAP 212
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + ++ EKDK + + ++ +++ LK +Y
Sbjct: 213 VKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263
>gi|329957336|ref|ZP_08297856.1| PPIC-type PPIASE domain protein [Bacteroides clarus YIT 12056]
gi|328523049|gb|EGF50152.1| PPIC-type PPIASE domain protein [Bacteroides clarus YIT 12056]
Length = 455
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 29/287 (10%), Positives = 70/287 (24%), Gaps = 23/287 (8%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ + + ++ + K + E+ K+ + E S
Sbjct: 161 RYFKDLPQDSIPYIPTQVEVQIITQQPKVPLEEIENVKKRLRDFTDRITKGETSFSTLAR 220
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
F DP V G ++ +++
Sbjct: 221 MYSEDRGTAINGGEMPFTGRGYL-DPAFANVAFNLQDPNKVSKIVESEFGFHIIQLMEK- 278
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+V + K + ++ + + + +F + L T
Sbjct: 279 ----RGDRIKVRHILLKPHIPEEALVSGMARLDSIADDIRNGKFSFEEAASVLSQDKDTR 334
Query: 532 NQ--------INRMDNENKFFGYDGISQVFSGPVEMVKCFPI-----ENGLSYVVFKVTN 578
N N E + + V V + V+ K+ +
Sbjct: 335 NNHGLLPNPNTNTSKFEMQELPPEIAKVVDKMKVGEISEAFTMIPQKTGKEECVIVKLKS 394
Query: 579 S----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K + + + ++LD I + V +++N
Sbjct: 395 RTNGHKATVADDYQNLKEIVLEKRRDEMLDKWIREKQKHTYVRINEN 441
>gi|210620911|ref|ZP_03292328.1| hypothetical protein CLOHIR_00271 [Clostridium hiranonis DSM 13275]
gi|210155123|gb|EEA86129.1| hypothetical protein CLOHIR_00271 [Clostridium hiranonis DSM 13275]
Length = 260
Score = 42.9 bits (98), Expect = 0.16, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 40/153 (26%), Gaps = 5/153 (3%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
E + + ++A ++ E K F +
Sbjct: 101 AYYDEHQDEFKVDEMAKARHILIKAENEDEFAAAEARAKEIAEEIKAGEKTFEQAAIDYS 160
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP-- 583
+ + VFS + P++ Y + KV
Sbjct: 161 DCPSNMQGGDLGLFGKGQMVPEFEEAVFSMNEGEL-SEPVKTSFGYHLIKVEERHKAGVS 219
Query: 584 --VQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ KD+ + L Q+ + +A L+ +Y
Sbjct: 220 KFEEVKDEILGKLAQLKQLKAYEDKVAELREKY 252
Score = 37.9 bits (85), Expect = 5.9, Method: Composition-based stats.
Identities = 8/73 (10%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ ++ +++ N+ K + +S K++L++LV+
Sbjct: 4 KVLATINGREISNIDLDNAVKSMHPQQQMRF---------QSEEGKKRLLEDLVNQELFY 54
Query: 101 QFIEDIGLEADHG 113
+D ++
Sbjct: 55 LEAKDNKVDETEE 67
>gi|45658751|ref|YP_002837.1| hypothetical protein LIC12922 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45601995|gb|AAS71474.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 362
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 21/191 (10%), Positives = 59/191 (30%), Gaps = 9/191 (4%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
FL + L + S + + +VG + ++ ++ + + +
Sbjct: 34 MFVFLFF-LRSTHAAESLNRVIATVGTVSISELDLDDATEKY-NRLQKHLKH-----EDY 86
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
+I+D L+ A +D E+ ++ + RV EI + G N+ +
Sbjct: 87 RKSFRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNR--KQFEKTME 144
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
G+ + ++ + + ++ + + P+ + + +
Sbjct: 145 TSSGMPFELWVTELPYQIKKGQLLQLKIAVPPPNEQEIRSWYNQNKDKVGFEIRYRIISI 204
Query: 202 VPAIADPSNAV 212
P
Sbjct: 205 APENDSIQEEN 215
>gi|296125998|ref|YP_003633250.1| SurA domain protein [Brachyspira murdochii DSM 12563]
gi|296017814|gb|ADG71051.1| SurA domain protein [Brachyspira murdochii DSM 12563]
Length = 317
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 14/155 (9%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
S+ LF+ +S V VG + + FI+ K L + ++ IG +N + +
Sbjct: 16 SNLLFNDVVNSIVGIVGSMPITYEDFISR-KSFLTLQAKSIGQKINDDM---------VY 65
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
+LV + +++ + V + K + D F +L EGI+ +E
Sbjct: 66 KDLVEERIMYLKLKEYNYVIEENDVSRRLENI----AKQYNMTLDQFAKQLMAEGISYEE 121
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
Y + K ++ ++ G+ V ++ D+
Sbjct: 122 YRNSIRKQIAMENLNGLVVNNTEITDEEADEFYNN 156
>gi|222099866|ref|YP_002534434.1| hypothetical protein CTN_0892 [Thermotoga neapolitana DSM 4359]
gi|221572256|gb|ACM23068.1| Putative uncharacterized protein [Thermotoga neapolitana DSM 4359]
Length = 580
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 45/469 (9%), Positives = 132/469 (28%), Gaps = 22/469 (4%)
Query: 5 IRKASRTW---VAKIFLVVLFVPFLIWGLSDALFSVSG------SSTVVSV--GRQKVPF 53
+RK + W + + + W +S L S ++ + +
Sbjct: 1 MRKWMKKWQGVIIWAIAIAFVAGMIWWSVSINLRGTSRNVNYTLDQSLAYITKDGTALTD 60
Query: 54 SSFIN---SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEA 110
++ + L I D + + + E ++
Sbjct: 61 PTYWLMPWEVNDYYSNLLSSYRINSLDPLFEEPRLKALIADVFLQQKVILYYAEKNNIKP 120
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
V E+ K+++ D R + EK+Y++ ++ V VG
Sbjct: 121 SKKEVEQEVKSIIN-TIKNDQNQLDQIKRRYGSLSVYEKDYLEPQIRVQLTVKKVQEAVG 179
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
+ + + D + L + + + + + +
Sbjct: 180 AVSEDEIKQYFEENKEELQNQYDRVDLEAISFDSSSTVQEFLAKASEMGFDEAASSMGLT 239
Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI----RTVEQLVFPNQKEADEA 286
+ ++I+ + + +T L N E +A
Sbjct: 240 VQPFSNATRGIFPEEIDTALFSATPGSIVGPFYFLDQWYVFRVQTSSVLTDFNAFENSDA 299
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
+ +K + + + + + + +L + + + + ++
Sbjct: 300 YSEVKTKLEQEKFQKWLEEFMREENLSYVFNDQVLEYWWRYLKNEEGLYEKLSNLLFQED 359
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE---FLALGTSMDE 403
V +K F + +D+ Q+ E+ ++ + +E S++E
Sbjct: 360 RLVEEVSDELKSLFVLLSDTKIQDLTQQIAEMTQYEEALKNAQEPDEDLVKKYGELSLEE 419
Query: 404 ISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
++++++ + + V+ + V + P +L + +
Sbjct: 420 VAKKKQELENEKNTVESRKRTVVNYLYSNYPSSTYVLEYAYQMNPDDIN 468
>gi|228984336|ref|ZP_04144517.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|229154831|ref|ZP_04282946.1| Foldase protein prsA 2 [Bacillus cereus ATCC 4342]
gi|228628779|gb|EEK85491.1| Foldase protein prsA 2 [Bacillus cereus ATCC 4342]
gi|228775453|gb|EEM23838.1| Foldase protein prsA 2 [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 285
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 28/244 (11%), Positives = 78/244 (31%), Gaps = 16/244 (6%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + +++ + D + K K +K L
Sbjct: 42 DFEKQLKDRYGKDMLYEMMAQDVITKKYKVSEDDVDKEVQKAKSQYGDQFKNILKNNGLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ L + + E ++V K + K ++A +
Sbjct: 102 DEADFKNQIKFKLAMNEAIKKSVTE---------KDVKDHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ + + + + + + + + P
Sbjct: 153 IKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFHSGAMTPEFETAAYKLKIGQI-SDP 210
Query: 565 IENGLSYVVFKVTNSKV--GPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHD 620
+++ Y + K+T K + KD L D ++ + ++ ++D
Sbjct: 211 VQSPNGYHIIKLTGKKDLQPYNEVKDSIRKNLEAERIADPTFSHKLLQKELKKANIKIND 270
Query: 621 NLIQ 624
+ ++
Sbjct: 271 SELE 274
>gi|254463317|ref|ZP_05076733.1| peptidyl-prolyl cis-trans isomerase SurA, putative [Rhodobacterales
bacterium HTCC2083]
gi|206679906|gb|EDZ44393.1| peptidyl-prolyl cis-trans isomerase SurA, putative
[Rhodobacteraceae bacterium HTCC2083]
Length = 416
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 16/160 (10%), Positives = 39/160 (24%), Gaps = 17/160 (10%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+ L +G + +T + V + + K +G +
Sbjct: 18 ALACGALLTFGSVQYSNAQGLFATAIKVNDRSITNFEIDERVKF--------LGLLRTPG 69
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
K + L+ + +G+ V + F+
Sbjct: 70 DH-----RKLAREQLIEDRLKLGAAQSVGISPTQEEVDAGMGE----FAGRVNLETAEFI 120
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ G++E + L+ +V G +
Sbjct: 121 KAINAGGVSEDAFRAFVLSGLAWRQLVQAKFGSRITVSEE 160
>gi|302879437|ref|YP_003848001.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
capsiferriformans ES-2]
gi|302582226|gb|ADL56237.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gallionella
capsiferriformans ES-2]
Length = 261
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 44/130 (33%), Gaps = 1/130 (0%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYD 547
K++ ++A L+ + K+ K F + + + K F
Sbjct: 133 KEYSARHILVATEAEARNLIAQLGKKAK-FEKLAEKSKDTGSAERGGALGWTVPKNFVEP 191
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
+ + + P++ + V K+ + + V D+ L Q + + + +I
Sbjct: 192 FANALLNLKKGEYTKDPVQTQFGWHVIKLDDMRALKVPSFDEIKPQLLQRLQQQAIQKII 251
Query: 608 AYLKSQYSVT 617
L++ +
Sbjct: 252 TDLRAAAKID 261
Score = 41.4 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 11/79 (13%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + + + K L +A + L K ILD+L++ +
Sbjct: 25 DKSAAVVNKVAISQERVEMNVKSALAQ-----------GQADTPELRKAILDDLINREVM 73
Query: 100 DQFIEDIGLEADHGRVWGE 118
Q GL+ V
Sbjct: 74 AQAATASGLDKSADVVQQI 92
>gi|118590091|ref|ZP_01547494.1| hypothetical protein SIAM614_11273 [Stappia aggregata IAM 12614]
gi|118437063|gb|EAV43701.1| hypothetical protein SIAM614_11273 [Stappia aggregata IAM 12614]
Length = 132
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 17/131 (12%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL-DKKILDNLVSGATLDQF 102
+ V + + + + +S + K+ + LV
Sbjct: 16 IIVNDVPITDYDISQRARL------------ITMTQRKSASIAKKQAEEELVDDQVKLAE 63
Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
E +G++ V ++ K S L G+ + L+
Sbjct: 64 AERVGIDVSKSEVDNAFNNI----ARNVKMSPAQLSKALRSGGVQPDTLKERLKAQLAWN 119
Query: 163 DVVGMFVGGMR 173
V+ G
Sbjct: 120 QVLRSRFSGRI 130
>gi|46446030|ref|YP_007395.1| hypothetical protein pc0396 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399671|emb|CAF23120.1| hypothetical protein pc0396 [Candidatus Protochlamydia amoebophila
UWE25]
Length = 375
Score = 42.9 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 6/85 (7%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLD---KKILDNLVS 95
+ + + + + + ++ ++S AR K L++L++
Sbjct: 59 NNRILARINGKPISAYDLVKKMDVT---FYKQFPQYLSSTEARYQYYQFSWKYALEDLIN 115
Query: 96 GATLDQFIEDIGLEADHGRVWGEIA 120
+ ++ +E G V E+
Sbjct: 116 KELILADAQESKVEVTSGDVRQEME 140
>gi|226329058|ref|ZP_03804576.1| hypothetical protein PROPEN_02961 [Proteus penneri ATCC 35198]
gi|225202244|gb|EEG84598.1| hypothetical protein PROPEN_02961 [Proteus penneri ATCC 35198]
Length = 114
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 32/110 (29%), Gaps = 11/110 (10%)
Query: 518 RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE----NGLSYVV 573
+ K S + I + + +FS P G V+
Sbjct: 7 EEALKAANVSFGSEESIVHSSATDV-----VQTAIFSMPKPAEGKKEYGMTNVPGTKVVL 61
Query: 574 FKVTNSKV--GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
++ + ++ + + M ++ L ++ LK + + D
Sbjct: 62 IQLDSVTDGKPTSEQLEFMTNLYRAQMGEEALQLMLRDLKDNAKIEIFDK 111
>gi|194014491|ref|ZP_03053108.1| foldase protein PrsA [Bacillus pumilus ATCC 7061]
gi|194013517|gb|EDW23082.1| foldase protein PrsA [Bacillus pumilus ATCC 7061]
Length = 294
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 22/180 (12%), Positives = 47/180 (26%), Gaps = 32/180 (17%)
Query: 479 LEEVLTDVKKDWKTVKTAEE---------------------------VSSKANQLVLEYS 511
+ + VK + T K A+ K V +
Sbjct: 99 KDYIKDQVKYELLTQKAAKANIKITDKEVKAYYDDLKGKIRASHILVADKKTADEVEKKL 158
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMD--NENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
+G+ + + + Q + + + F V + P+++
Sbjct: 159 DKGEKWDAVVSEYSTDTASAAQGGDVGWFAKEGQMDENFSKAAFKLKVNEI-SKPVKSQF 217
Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
Y + K T + K L D + +++ L V V D ++
Sbjct: 218 GYHIIKKTEERGKYDDMKADLKKELLNQKQADTNEIQTILNKLVKDADVKVKDKELENTF 277
>gi|167765434|ref|ZP_02437547.1| hypothetical protein BACSTE_03824 [Bacteroides stercoris ATCC
43183]
gi|167697062|gb|EDS13641.1| hypothetical protein BACSTE_03824 [Bacteroides stercoris ATCC
43183]
Length = 518
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 41/396 (10%), Positives = 90/396 (22%), Gaps = 27/396 (6%)
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
A + + + D ++ L++ + + +
Sbjct: 124 HAGRVRVSHIFKYLPQNVSGHALRKAVAGMDSIYEYLRRNQTPEAFDACVKRFSDEKQPF 183
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
S +P + G+ + G I V SF +VK +
Sbjct: 184 WVSWLQMPVEFENVA--FELSAGEVSQPFFTPQGIHIVKVIERME--MPSFDDVKNGMEV 239
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL-VDFAGKDVKGKEV-- 430
++ E + AGK G +
Sbjct: 240 CRAYRHGTDWGVEAQVEKLKKEYGYAPDKTGMDELIRTGQTKRTLFTLAGKSYTGNDFIC 299
Query: 431 --AAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
A P + F L ++ + Q++E K+
Sbjct: 300 FAVAYPAGIRRQLDAFVMKTVLDYENVCLERKYPELRYQVEEYRNRLLLDKITGQEIQKR 359
Query: 489 DWKTVKTAEEVSSK--ANQLVLEYSKEGKNFRDIGKNL---------GASLLTTNQINRM 537
+ K ++ E +G + K + R+
Sbjct: 360 IESDEAGLQTYFEKHRSDYQWREQRYKGIVLHGVSKRIVKQARKFLKSLPEEEWKDAIRL 419
Query: 538 DNENKFFGYDGISQ-VFSGPVEMVKCFPIENG------LSYVVFKVTNSKVGPVQEKDKF 590
Q F+ + + G +S+ V KV + +
Sbjct: 420 TFNAGAQPQIQAEQGTFASGDNVYVDDLVFKGKDAAPMVSFPFTAVLGKKVKAPDDYREV 479
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ L I L++ V ++ +++
Sbjct: 480 KDRVVTDYRNCLEKQWITRLRTSAKVEINQEVLKTV 515
>gi|29840122|ref|NP_829228.1| hypothetical protein CCA00358 [Chlamydophila caviae GPIC]
gi|29834470|gb|AAP05106.1| conserved hypothetical protein [Chlamydophila caviae GPIC]
Length = 689
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 56/575 (9%), Positives = 134/575 (23%), Gaps = 42/575 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPF-LIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFIN 58
ML K + ++ + + V + WG S V SV +K F+
Sbjct: 1 MLAFFYKHQKKFIGLVIVGVCVSGIGIGWGRYPGESASNGSRKVVFSVPGKKYSEREFLA 60
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD----------------QF 102
+ + G L ++ L N + Q
Sbjct: 61 IKRFFMNEAYPFTGNPQEWNFLNEGLLTERFLTNKIGEKLFLKIYSQDYPAFNKEKRYQA 120
Query: 103 IEDIGL-EADHGRVWGE-----IARSPLFHGKDNKFSHDVFVSRLARE-------GINEK 149
VW DN S + FV+R+ K
Sbjct: 121 YRRFDTPFISSEEVWKSSAPRLYQALTTLQEIDNPVSPEGFVARVQLFLEEKKFPHYILK 180
Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
+ +++ +M + + G + + F S L + +
Sbjct: 181 QMLEYRRQMFNLPQDAALAQGKDLRLFGYKNISDWFGDAYVSAAVEALLRFVNEQKKNIA 240
Query: 210 NAVLTQWFEKYKDNYRAPEYKRISY------ILFDVHEKEKKIEISNDELQAEYEKNKEK 263
L + + ++D + K + V + +S E Y +
Sbjct: 241 MPSLKEARQDFEDKAQQAFTKLTKHAGLTLSFDQFVASYFDFLGVSKSEFFNMYREILLC 300
Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDV 323
+ + + + ++L E + + + V
Sbjct: 301 KRAFLQLEGSVTFDYRPLQEFFSMGKDSTSVEMVKLPREYQFKNREDLEAFETYISLVGV 360
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ D + + V S + E K + + + E
Sbjct: 361 PVKDCLDVPRFTLPIKTIKAKEPRLVGRRFLVSYKSIHLQDLETKVPMVEVHQWQQNPEN 420
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
+ ++ + +S D + + ++ K + + +
Sbjct: 421 FQILLQQFPKIETCNSSKDFQALKPSLLEKIYSFTRKEILRAHPKRILESLAQCKHESHE 480
Query: 444 FGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL--TDVKKDWKTVKT---AEE 498
L + + + + E V ++ + E
Sbjct: 481 IFLSSGKDSILEGILDGDKLAALLLDNELLEAYSQDGEHYYTFVVNTCFEGEEVIPYREV 540
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+ + ++ K + + L +
Sbjct: 541 LRKDLAKALVSSHKNSSHIDKVISALKSHYQEEEN 575
>gi|294827708|ref|NP_710856.2| hypothetical protein LA_0675 [Leptospira interrogans serovar Lai
str. 56601]
gi|293385551|gb|AAN47874.2| hypothetical protein LA_0675 [Leptospira interrogans serovar Lai
str. 56601]
Length = 344
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 21/191 (10%), Positives = 59/191 (30%), Gaps = 9/191 (4%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
FL + L + S + + +VG + ++ ++ + + +
Sbjct: 16 MFVFLFF-LRSTHAAESLNRVIATVGTVSISELDLDDATEKY-NRLQKHLKH-----EDY 68
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
+I+D L+ A +D E+ ++ + RV EI + G N+ +
Sbjct: 69 RKSFRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDSEIEKRMEVMGITNR--KQFEKTME 126
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
G+ + ++ + + ++ + + P+ + + +
Sbjct: 127 TSSGMPFELWVTELPYQIKKGQLLQLKIAVPPPNEQEIRSWYNQNKDKVGFEIRYRIISI 186
Query: 202 VPAIADPSNAV 212
P
Sbjct: 187 APENDSIQEEN 197
>gi|163759133|ref|ZP_02166219.1| hypothetical protein HPDFL43_05195 [Hoeflea phototrophica DFL-43]
gi|162283537|gb|EDQ33822.1| hypothetical protein HPDFL43_05195 [Hoeflea phototrophica DFL-43]
Length = 283
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 26/193 (13%), Positives = 43/193 (22%), Gaps = 17/193 (8%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
+ V +Q + + + G L K + L+ + Q
Sbjct: 8 IVVNKQAITSVDIARRV--AFLRLQRTGG-----------NLQAKAREQLIEESLKYQEA 54
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
I ++ AR GK N S L + G+ + + D +S
Sbjct: 55 LRIRAVVSQAQIDASYAR----FGKSNNLSVKQLNQVLNQAGVTPQHFKDFIRVQMSWPR 110
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDN 223
VV G D + PSN K
Sbjct: 111 VVQALEGTSGGGMSTQDLVSKMLERGDDKPSTTEYILQQVIFVVPSNKRSNATLNARKRE 170
Query: 224 YRAPEYKRISYIL 236
+
Sbjct: 171 AEQLRGRYQGCEN 183
>gi|159901534|ref|YP_001547780.1| hypothetical protein Haur_5022 [Herpetosiphon aurantiacus ATCC
23779]
gi|159894573|gb|ABX07652.1| hypothetical protein Haur_5022 [Herpetosiphon aurantiacus ATCC
23779]
Length = 261
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 17/225 (7%), Positives = 61/225 (27%), Gaps = 3/225 (1%)
Query: 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINE 148
+L+ L++ +D I +E + F + + L +G++
Sbjct: 27 VLERLIAKGLIDDAIRRDSIELSATELQEA---MDGFRRARGLLTATATEAWLTAKGLSY 83
Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + + + + A + + + +
Sbjct: 84 QRFEQLVEREAQLARLKDRVIASRMADWFTAELAGFDQVRLMILSFADVEHAQEIWRTAI 143
Query: 209 SNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPE 268
+ + + + + HE+ + + A +
Sbjct: 144 QDPDRLAYQAEEAWTRGVLNETIGVFQTWLRHERPTWLPETAFGCPAGTILPLQPLPDGG 203
Query: 269 IRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
I ++ L + + + + ++ L E++ ++ + G
Sbjct: 204 IALIKVLSYQHAQRDQATQHAFRQKLFTAWLDEQRAQATITWNWG 248
>gi|241589917|ref|YP_002979942.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
12D]
gi|240868629|gb|ACS66288.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia pickettii
12D]
Length = 278
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 9/84 (10%), Positives = 22/84 (26%), Gaps = 14/84 (16%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
++ S A +S V +V + + + + G N
Sbjct: 12 AAGLMLLAASHAWADGLPASVVATVNGTPITQAQLDRAV--------AQTGAGANP---- 59
Query: 82 SVGLDKKILDNLVSGATLDQFIED 105
+ + + L++ Q
Sbjct: 60 --NVVQALKQQLIARELFRQQAAK 81
>gi|319944662|ref|ZP_08018929.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
51599]
gi|319742101|gb|EFV94521.1| peptidyl-prolyl cis-trans isomerase [Lautropia mirabilis ATCC
51599]
Length = 248
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 11/140 (7%), Positives = 34/140 (24%), Gaps = 8/140 (5%)
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG--ASLLTTNQINRMDNEN 541
+ + + A + + + + F + S + RM
Sbjct: 98 DHILFAVNERTPLDALRLVAKETLALLQEHPERFEAMAAERSNCPSAENGGALGRMQRGE 157
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMM--- 598
+ + ++ + IE + +V G ++ + Q +
Sbjct: 158 TV--PEFEAALWRIAPGTIADSLIETRYGLHIIRVNRRHEGQQLPFEQVQEGIAQALTAA 215
Query: 599 -NKDLLDSVIAYLKSQYSVT 617
+ L + +
Sbjct: 216 SRDAAWRQYVQVLLGRAKIE 235
>gi|170759119|ref|YP_001785376.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A3
str. Loch Maree]
gi|169406108|gb|ACA54519.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A3
str. Loch Maree]
Length = 247
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 5/122 (4%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMV 560
K + E K+G +F + + + + V V+ V
Sbjct: 126 EKEANNIYEEIKDGLDFSEAAEKYSKCPSKAQGGSLGTFTRGQMVPEFEKAVLEAEVDKV 185
Query: 561 KCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY----LTQMMNKDLLDSVIAYLKSQYSV 616
I+ Y + V N K ++ D+ + L Q + + L+ +Y+V
Sbjct: 186 TEA-IKTQFGYHLIIVDNIKESMIKPFDEVKAMIDNKLLQEKQNEQYNEFTQNLRDKYTV 244
Query: 617 TV 618
+
Sbjct: 245 EI 246
>gi|145628832|ref|ZP_01784632.1| thymidylate kinase [Haemophilus influenzae 22.1-21]
gi|144979302|gb|EDJ88988.1| thymidylate kinase [Haemophilus influenzae 22.1-21]
Length = 246
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 120 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSK 179
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 180 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 238
Query: 614 YSVT 617
++
Sbjct: 239 ANIQ 242
>gi|323694481|ref|ZP_08108651.1| hypothetical protein HMPREF9475_03515 [Clostridium symbiosum
WAL-14673]
gi|323501469|gb|EGB17361.1| hypothetical protein HMPREF9475_03515 [Clostridium symbiosum
WAL-14673]
Length = 314
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 28/263 (10%), Positives = 71/263 (26%), Gaps = 14/263 (5%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + + + T V+ + L + KI+
Sbjct: 27 KSEKGYSLPEIMVIAMTEQNRYEEICTDQIWNVEIAEEGENFASYLTGQIKNFMEELKIM 86
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ--IK 469
++ + + + E+AA + + + V Y + ++
Sbjct: 87 NLLAQDRNMSLLPEERSEMAAAAAEYFGNLTAEDIEHMGVSEEDVRAVFEDYCLAEKLVE 146
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
E D ++ + V + + A L L ++E +F + G S
Sbjct: 147 ELTKGIDLEVSDSEAKVITVMQAETADRQT---AENLSLAAAQENADFEKCASDAGLSAT 203
Query: 530 TTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDK 589
T + R + + F+ V NG YV+ +++ +
Sbjct: 204 TRQ-LGRKEE-----SQEFEDAAFALSAGQVSQVIESNGTYYVIKCISDY---DEEATAA 254
Query: 590 FISYLTQMMNKDLLDSVIAYLKS 612
+ + + + +
Sbjct: 255 RKKIIFEERKRKAFKEIYDSFRE 277
>gi|317010879|gb|ADU84626.1| hypothetical protein HPSA_03125 [Helicobacter pylori SouthAfrica7]
Length = 414
Score = 42.9 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 31/231 (13%)
Query: 27 IWGLSDALFSVSGSSTVV-----SVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
I+G D + VV V + E+ +
Sbjct: 142 IFGNPDNAAGNTLEDKVVGGISLLVNGSPITLYQIQE-------------------EQEK 182
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
S + D L++ +Q IE + + D ++ E+A G D F L
Sbjct: 183 SKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MDLDHFKQML 238
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
EG + + + + + + + + R Y+ + +
Sbjct: 239 MAEGHYKLYRDQLKEHLEMQELLRNILLTN---VDTSSETKMREYYNKHKEQFSIPTEVE 295
Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ L + + ++ + ++ IS+ E
Sbjct: 296 TVRYTSTNQEDLERAMADPNLEIPGVTKANEKIEMKTLNPQIAQVFISHAE 346
>gi|91215920|ref|ZP_01252889.1| PPIC-type PPIASE domain protein [Psychroflexus torquis ATCC 700755]
gi|91185897|gb|EAS72271.1| PPIC-type PPIASE domain protein [Psychroflexus torquis ATCC 700755]
Length = 643
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 63/562 (11%), Positives = 168/562 (29%), Gaps = 48/562 (8%)
Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
+ + F + + + E + ++ Y T++ + ++ +
Sbjct: 77 DQELDTLNSYQKEFSKYYKQIADSYISNGEVTEAMVKEAYGRTRTEVRASHILLNLSKYE 136
Query: 172 MRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKR 231
+ + D+ +L ++ + N WF +K Y +
Sbjct: 137 EDTAKVYNRALVLMKRAENGEDFGMLAKQNSEDPSAQRNEGNLNWFNTFKMVYEFEDVAY 196
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
+ + E + + + + + +++ D+ + +K
Sbjct: 197 KLDVGEISKPVRSDFGYHIIKKTGERASKGKLKTAHIMVVNKDSLRDPKEQIDKIYVKVK 256
Query: 292 KGKKFIQLAEEQGKSLS----DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
G F LA++ + +F + + + F L GD+T FG
Sbjct: 257 SGDDFHDLAKQYSDDTDTASKGGYVAAFGIGGLNSKTYENEAFQLENIGDYTEPFQTKFG 316
Query: 348 YVIAHVSNIKPSFTVS----------------------FQEVKKDIANQMRITKASEKVK 385
+ I + ++P + +E + AS
Sbjct: 317 WHIVKLIEVEPIQSFQDIKEDLKKRLKSSSRSKLLVSKIKEDLEARYEVTINEVASSYFL 376
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK-------EQ 438
+ + + S E ++ ++ VDF + K +
Sbjct: 377 KALDSTFDKMKWRFSPGENLPETYVIKVEDKEVDFKTFGEYLERQQRKLSKLPKHKIVIE 436
Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
++ L+ T + +I+E + + T+V + +
Sbjct: 437 NALNDMVYNELLAHHKTQLVEIDQDFANRIEEYK-NGILIFDYMSTNVWEPISKDTLLQR 495
Query: 499 --VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNENKFFGYDGISQVFSG 555
+S ++ V + EG+ + K+ + + + +D + D I + S
Sbjct: 496 DYYTSNQDEFVADSKIEGQLYTSASKSSIKDVRSRLKEKMTLDTISIQLPDDVILEQVSI 555
Query: 556 PVEMVK-----------CFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLD 604
P K ++ Y++ K V E +K + + + +
Sbjct: 556 PKSSSKIPKALKFKEGVSKIYKHLDQYLIMNAIEVKPSFVPEFNKVSGKIISSLQEKREE 615
Query: 605 SVIAYLKSQYSVTVHDNLIQRY 626
+I+ L+ QY++ ++ +++++
Sbjct: 616 QLISNLRDQYTMKINKDILEKL 637
>gi|315644393|ref|ZP_07897533.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
V453]
gi|315280270|gb|EFU43562.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus vortex
V453]
Length = 311
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 28/138 (20%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSV-------SGSSTVVSVGRQKVPFSSFIN 58
R+ W I L + W L +FS GS V S+ + + +++
Sbjct: 3 RQEKGLWATVIVLTACVIGMGGWVLFSGIFSQEASPSLKDGSLAVASIQDRAITEDEWVD 62
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
K+ G ++L +++ + + G++ V E
Sbjct: 63 ELKKRYGR---------------------EMLMTMLNRQAVALEAKAKGIDITTAEVDAE 101
Query: 119 IARSPLFHGKDNKFSHDV 136
I +G +F ++
Sbjct: 102 IDVMSRSYGSKERFLSEM 119
>gi|148827655|ref|YP_001292408.1| thymidylate kinase [Haemophilus influenzae PittGG]
gi|148718897|gb|ABR00025.1| thymidylate kinase [Haemophilus influenzae PittGG]
Length = 311
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 34/123 (27%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ + ++ + F D L+ + +Q+
Sbjct: 185 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQIVVKSK 244
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ V P + + + +VT + G K L +D + L+ +
Sbjct: 245 QGVISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATKDWVKALRKRA 304
Query: 615 SVT 617
++
Sbjct: 305 NIQ 307
Score = 39.1 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 46/150 (30%), Gaps = 27/150 (18%)
Query: 24 PFLIWGLSDALFSVSGS---STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
FL+ L F+ V +V + S +G +
Sbjct: 8 SFLLATLGCVAFTSMAQAAERVVATVDGIPILESQV-----------RANMGKKGD---- 52
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ +D ++ + + +++ G++ D + + + +G ++ F+
Sbjct: 53 -----RQSAIDKIIDDILVQKAVQESGVKIDPREIDHIVEDTAARNG----LTYGQFLDA 103
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
L +GI+ + + V +
Sbjct: 104 LDYQGISLNTFRQQIANQMVMGAVRNKAIQ 133
>gi|160898739|ref|YP_001564321.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
SPH-1]
gi|160364323|gb|ABX35936.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Delftia acidovorans
SPH-1]
Length = 261
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 46/131 (35%), Gaps = 2/131 (1%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGY 546
K++K E +A ++ E K GK F DI K + + +
Sbjct: 132 KEYKASHILVESEDRAKAIIAEI-KAGKKFEDIAKKESKDPGSGARGGDLDWANPGNYVP 190
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ + + P++ Y + ++ +++ + + ++ + Q + + L
Sbjct: 191 EFSEALIKLEKGGMTQEPVKTQFGYHIIRLDDARQAELPKFEEVKPQIVQQLQQQKLAQF 250
Query: 607 IAYLKSQYSVT 617
L+ + +
Sbjct: 251 QESLREKAKIQ 261
>gi|217963619|ref|YP_002349297.1| foldase protein PrsA [Listeria monocytogenes HCC23]
gi|217332889|gb|ACK38683.1| foldase protein PrsA [Listeria monocytogenes HCC23]
Length = 293
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 2/231 (0%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K E ++ I + +DV K V
Sbjct: 34 DVTKDELYDAMKDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLA 93
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ K L + + + D+ L++ + D +KA +
Sbjct: 94 QSGLTEKSFKSQLKYNLLVQKATEANTDTSDKVLKKYYETWQPDITVSHILVADENKAKE 153
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
V + K+G F D+ K T ++ ++ + P
Sbjct: 154 -VEQKLKDGAKFADLAKEYSTDTATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAP 212
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + ++ EKDK + + ++ +++ LK +Y
Sbjct: 213 VKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263
>gi|99080787|ref|YP_612941.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
gi|99037067|gb|ABF63679.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
Length = 424
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 16/132 (12%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
S ++V + L ++ G + D+L+
Sbjct: 46 SPAITVNEDVITTYELEQR-ALFLSVLGSVQGDPF-----------ETARDDLIEDRLKR 93
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q ++D+GL V + + + + F++ L + G+ + D T L
Sbjct: 94 QVMKDVGLTLSEEEVTEGMREL----AQRANLTLEEFLASLNQAGVAPETVRDFTTAGLG 149
Query: 161 RTDVVGMFVGGM 172
+ V
Sbjct: 150 WREYVRGRFLSQ 161
>gi|322804319|emb|CBZ01869.1| foldase protein PrsA precursor [Clostridium botulinum H04402 065]
Length = 247
Score = 42.5 bits (97), Expect = 0.19, Method: Composition-based stats.
Identities = 24/224 (10%), Positives = 56/224 (25%), Gaps = 6/224 (2%)
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ E L+ A ++ + +
Sbjct: 25 SFPKERQTYLNTEKGREELIKQMIDFELSYNYAKDMKFDETEDFKKQLEATKKQLLIQIA 84
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ E + + + ++ + +AN + E K G +F
Sbjct: 85 VSNVLARATVSEEESKKYYEENKEEFRTQELITARHILVDSEEEANSIYEEI-KNGLDFS 143
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+ + + + V V+ V I+ Y + V N
Sbjct: 144 EAAEKYSKCPSKAQGGSLGTFTRGQMVPEFEKAVLEAEVDKVTEA-IKTQFGYHLIIVDN 202
Query: 579 SKVGPVQEKDKFISY----LTQMMNKDLLDSVIAYLKSQYSVTV 618
K ++ D+ + L Q + L+ +Y+V +
Sbjct: 203 IKESMIKPFDEVKAMIDNKLLQEKQNQQYNEFTQNLRDKYTVEI 246
>gi|320537952|ref|ZP_08037859.1| hypothetical protein HMPREF9554_02614 [Treponema phagedenis F0421]
gi|320145205|gb|EFW36914.1| hypothetical protein HMPREF9554_02614 [Treponema phagedenis F0421]
Length = 510
Score = 42.5 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 16/219 (7%), Positives = 52/219 (23%), Gaps = 10/219 (4%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV--PFSSFINSWKQELGMIS 68
T I + + F+ + SG ++ + ++ + +
Sbjct: 13 TVGGIIIFLFAVIAFVFIPGAGGFGRNSGLISLGTWDGIRIENTPDGLFAKQYAMISRAA 72
Query: 69 QKIG---FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
++ G + V Q + G + + P +
Sbjct: 73 EQYGLYPNDPAQREMIDYQIMHIAFQAAVIELASMQTTQKSGFVLTSDMLNKHL--IPFY 130
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ +S ++ + + + + + + + L
Sbjct: 131 SDSNGIYSPQIYQNTSEQVKLAR---RKEVSDAIYSSQYFQNLFSNGNDFSGLKMSENEV 187
Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
F V + ++ +++KD +
Sbjct: 188 KFIKDMTKDERSFQYIVITDKVFPAENIVKYGKEHKDLF 226
>gi|300088060|ref|YP_003758582.1| putative protein export protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527793|gb|ADJ26261.1| putative protein export protein [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 426
Score = 42.5 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 47/398 (11%), Positives = 123/398 (30%), Gaps = 21/398 (5%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
W+ + V + I ++ L V TV+++ + ++ +S+
Sbjct: 35 WIGLGVIGVAALVVSIGVIASWLIPVYLPLQKTVLTINDT-----EYKAAY------VSK 83
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ F + S +LD + + ++G+ + I + L D
Sbjct: 84 MVNFYTGGDATYSYLYIDLVLDQIEKNQLMKDGAAELGITVSDQEIKDAIKTAEL---DD 140
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
N+ + D+ + L + +N++ + + + M + + + + +
Sbjct: 141 NEVTRDIVRASLLYQKLNDEHFDAQVPASGEQRQALVMLLESQEKAETVRSRLSQGESFA 200
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
+ L+ V D F K N + + + D + +
Sbjct: 201 DIAVELSLDPTTVTLEGDMGYHPPG--FLDGKLNADGLDERVDAGQPGDTGFFYDENKSK 258
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
++ V ++ P ++A+EA Q + G+ F + EE + +S
Sbjct: 259 KGGFWIVKATERQTADDNTQVQVFGILLPTLEKAEEARQRVLDGEDFATVVEEMTQHVSS 318
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKK---GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQE 366
+ G D + F + + + I + + +
Sbjct: 319 KASGGDLGLLSADSEAPYADFIFDENTELNELSQPIFAPTADTTGGWWFYQVASVEQSRL 378
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
++ Q+ +E +++ E+ + E+
Sbjct: 379 YSEEDRTQLIEDVFTEWMEQLEAAAEDDIIRVELTQEM 416
>gi|46109434|ref|XP_381775.1| hypothetical protein FG01599.1 [Gibberella zeae PH-1]
Length = 1347
Score = 42.5 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 49/470 (10%), Positives = 113/470 (24%), Gaps = 18/470 (3%)
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
+ + + H+ + ++ + + + +
Sbjct: 471 YKHGHHNYDHNDYNYYHKHHDNKHYDHHHGDKHYGHHHEHHKHYEHHDPSYHYEHHKHYE 530
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI--------- 235
+ + ++ + H + +K+ +
Sbjct: 531 HHDPSYHHEHHKHYDHHHGDKYKHHPKRSDEHHDKHHGKHYEEPVTVYYKEKAEDVNAKA 590
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
++EK +K EI + E K +Y E Q + ++
Sbjct: 591 NHVIYEKVQKHEIPAHIYKKLAEAKKHQYDHEHKYGHEHKHAEEQYHQKKLAEAKLSKAI 650
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGS-----FGYVI 350
A GK ++ K+Y + KK + +
Sbjct: 651 EEYYALHYGKQHNEHKKHEPEKKYYEQKEFENKKEHEYKKHGPKAYYEHNKYGHLNEHKH 710
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ + + K K + S E + KI
Sbjct: 711 HDKHEEYEPERYNHAHYRHKEHKPKYDSDPYHDKKAFLKDYKYDGVNIHSTWEKLYKAKI 770
Query: 411 VSIDLPLVDFAGKDVK--GKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
+K L + + D+ + D +I
Sbjct: 771 EHDHKQKQKAYAVHFDKHPPFYKHSSFKRSALPKYYHGDEAVEIDTAKVEKYIEKAEYRI 830
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
E I K D +K +V + +V + K K I + G
Sbjct: 831 NEGISKAIYKAINSAGDDPSTGTIIKFVNKVEAAIKYIVAKNLK--KAVAHIAEIHGIEE 888
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+ +++ + + ++F+ ++ + P E + Y V KV
Sbjct: 889 PSADEVEKYIYKTAKHILKAADEIFTKTIDALGEDPNEKEVEYAVAKVEK 938
>gi|325523302|gb|EGD01656.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
TJI49]
Length = 295
Score = 42.5 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 10/68 (14%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
TV V + S+ ++ K G L I L++ L Q
Sbjct: 46 TVAVVNGVAITQSALDDAVKSVAAR----TGRPDTP------QLRDAIKRQLIAREVLRQ 95
Query: 102 FIEDIGLE 109
+
Sbjct: 96 NAMKVHFN 103
>gi|32170809|gb|AAP57685.1| GelI [Sphingomonas elodea]
Length = 300
Score = 42.5 bits (97), Expect = 0.20, Method: Composition-based stats.
Identities = 6/90 (6%), Positives = 21/90 (23%), Gaps = 11/90 (12%)
Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
G + V +V ++ + + ++
Sbjct: 19 GCGSKEGKLDKGQVVATVDGDEITVFELNAEVQ-----------AAPVPQGTDRKLAEQL 67
Query: 89 ILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
L ++ L + + L+ + +
Sbjct: 68 ALQRIIERKILSKIAREQKLDKTPSFLIQQ 97
>gi|331086144|ref|ZP_08335226.1| hypothetical protein HMPREF0987_01529 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406303|gb|EGG85817.1| hypothetical protein HMPREF0987_01529 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 353
Score = 42.5 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 31/279 (11%), Positives = 75/279 (26%), Gaps = 15/279 (5%)
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ + + V + I+K + ++ E L +++ K+ +
Sbjct: 53 QQAEYETYYSGVMGEDMWSTEISKGKSYEETVKNQILETLENMYVLEDHMGDYKVEITEE 112
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ E + KE + + L+ + + E
Sbjct: 113 EKKKISEAAKAFDEANGLEEKEAVSGTTENVERMLTLVTIQEKMQKAMVADVDTEVSDEE 172
Query: 476 DRKLEEVLTDVKKDWKTV--------KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ ++ + + + K + + KEG +F K
Sbjct: 173 AAQKSMQYVNLSLTKTKEDGSTEQMTEEEKAEAKKKAEAFQKAVKEGADFARTAKEKELE 232
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ T D E +++ V IE Y V KVT + +
Sbjct: 233 VKTMT----FDEETTTPDEGLMTKANKLGEGEV-SEVIETDSGYYVLKVT--SLLDREAT 285
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
D + + + + K + V++ + +
Sbjct: 286 DAEKESIAEERKEKQYKDLCEEWKKDVKIEVNEKVWDKI 324
>gi|290893167|ref|ZP_06556155.1| rotamase [Listeria monocytogenes FSL J2-071]
gi|290557329|gb|EFD90855.1| rotamase [Listeria monocytogenes FSL J2-071]
Length = 293
Score = 42.5 bits (97), Expect = 0.21, Method: Composition-based stats.
Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 2/231 (0%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K E ++ I + +DV K V
Sbjct: 34 DVTKDELYDAMKDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLA 93
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ K L + + + D+ L++ + D +KA +
Sbjct: 94 QSGLTEKSFKSQLKYNLLVQKATEANTDTSDKVLKKYYETWQPDITVSHILVADENKAKE 153
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
V + K+G F D+ K T ++ ++ + P
Sbjct: 154 -VEQKLKDGAKFADLAKEYSTDTATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAP 212
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + ++ EKDK + + ++ +++ LK +Y
Sbjct: 213 VKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 263
>gi|325294908|ref|YP_004281422.1| hypothetical protein Dester_0717 [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065356|gb|ADY73363.1| hypothetical protein Dester_0717 [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 238
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 12/120 (10%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVV--SVGRQKVPFSSFINSWKQELGMISQKI 71
K FL + + F GL + + S S V V + F + +K I ++
Sbjct: 4 LKKFLSMFIL-FFFVGLHNTYATNSSSDCVAYTKVDNICITIPEFKSYYKHYKAEIIKEK 62
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH------GRVWGEIARSPLF 125
G ++ L+ L E +E + I +
Sbjct: 63 GKG---NWFFTLADKIAATKELMVQKLLLHEAEKNKIETTEYFKKYQEEIKEGIKEIDNY 119
>gi|325110000|ref|YP_004271068.1| hypothetical protein Plabr_3449 [Planctomyces brasiliensis DSM
5305]
gi|324970268|gb|ADY61046.1| hypothetical protein Plabr_3449 [Planctomyces brasiliensis DSM
5305]
Length = 927
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 29/323 (8%), Positives = 76/323 (23%), Gaps = 63/323 (19%)
Query: 362 VSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP----- 416
E+ M A V + ++ + ++ + ++ P
Sbjct: 599 QKMAEMASQARGDMISINAKYAVAPEGEQAAAAEEIRKEAQAYAKANGLRYVETPLLSPS 658
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY------------- 463
++ + G + + D S ++ L Y
Sbjct: 659 ELEESEDHPIGGATEPVANPFERTEANTVVDQHFSVNNIEELARQKYRLFEAEDPSTLNR 718
Query: 464 MWVQIKESIPARDRKLEE--VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ + +E V V++ W+ K E +A++++ + K + +
Sbjct: 719 FVHWQVDYRASHVPTWDEEGVQEQVRETWRNTKAQELAKKRADEVLKMLKESDKPWSETL 778
Query: 522 KNLGASLLT------------TNQINRMDNEN------------------KFFGYDGISQ 551
+ + + + + R +
Sbjct: 779 EGVTETGKEGSQTLVVSYTGPFSWLTRSSAPQTNPFAPPPMEITQIPIIFGGVDQTFMKT 838
Query: 552 V-FSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY------------LTQMM 598
V F + + V K N +D L +
Sbjct: 839 VFFDLSPGELGTVWGADHRYVYVVKPENRTEAETVRQDFMGPQANLFSFMSPYEMLARAD 898
Query: 599 NKDLLDSVIAYLKSQYSVTVHDN 621
+++ + + +Y V D
Sbjct: 899 TREVARLWLDSVYERYEVKWKDE 921
>gi|290992041|ref|XP_002678643.1| kinesin-14 [Naegleria gruberi]
gi|284092256|gb|EFC45899.1| kinesin-14 [Naegleria gruberi]
Length = 1094
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 52/525 (9%), Positives = 140/525 (26%), Gaps = 15/525 (2%)
Query: 98 TLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ Q I L+ +V +A+ + + + KFS VF + + +Y D
Sbjct: 194 IIPQTITKENLKVSPEKVEKVVAQPAISNQGEEKFSFTVFSTITQKNYKILIKYKDVNKL 253
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ + V + +L + + S +++D + +L
Sbjct: 254 KVYKIKSNLHRVVNVPVEEQVLYASVPTQEISVSKPLEDHVTGSSLSLSDKTVLILVHIS 313
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ + + + + + + +++ E + ++
Sbjct: 314 QRKQYENQIEKRQSPNKVNQQQNDEMLLEEEQPRPPKTPSPNKLTSPSKQPLQHDSPPQQ 373
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
+ S QL+ + S S+ + + S +
Sbjct: 374 LSSPNQPYQNDSKSPSPIAKQLSPKLSSSQSEDRNEEYDLDDSFINSFINPTRDNEATKT 433
Query: 338 FTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLAL 397
+ P F K + K E + + +
Sbjct: 434 EPRNNMSMNTSSYIVSFSSSPPRDSVFSPRFKMSDVEAEREKTIRMALEKHFQNQMNDEK 493
Query: 398 GTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA 457
+ + +K + D + + E+ + + + +
Sbjct: 494 LKLSRKYASEKKEILQKANE-DRQELMTENTRLRKELLSEKDIQKTPYGTRGGAASEDIT 552
Query: 458 LPDGSYMWVQI-KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
+Q + ++E T +K + + + V ++
Sbjct: 553 KLKQQLAELQASIRERDGKIVQMENSATQLKNELVQESQVWRNKFEIEKQVAWNREKDTI 612
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
R+ + + L Q R++++N + +V + +E K F + Y + +
Sbjct: 613 LRNWAEEIEI-LKLVQQQERIESQNIIDQIETELEVANQKIESDKKFV--DSAEYAIENL 669
Query: 577 TNS---------KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
N + + L + DL L++
Sbjct: 670 KNQIGKLMRGDYDTASLIMEAAKERALIEKRYNDLYSDY-NALRN 713
>gi|168185280|ref|ZP_02619944.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Bf]
gi|237793360|ref|YP_002860912.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Ba4
str. 657]
gi|182671671|gb|EDT83632.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Bf]
gi|229264108|gb|ACQ55141.1| peptidil-prolyl isomerase family protein [Clostridium botulinum Ba4
str. 657]
Length = 247
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 24/224 (10%), Positives = 57/224 (25%), Gaps = 6/224 (2%)
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ E L+ A ++ + +
Sbjct: 25 SFPKERQTYLNTEKGREELIKQMIDFELSYNYAKDMKFDETEDFKKQLEATKKQLLIQIA 84
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ + E + + + ++ + +AN + E K G +F
Sbjct: 85 VSNALARATVSEEESKKYYEENKEEFRTQELITARHILVDSEEEANNIYEEI-KNGLDFS 143
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+ + + + V V+ V I+ Y + V N
Sbjct: 144 EAAEKYSKCPSKAQGGSLGTFTRGQMVPEFEKAVLEAEVDKVTQA-IKTQFGYHLIIVDN 202
Query: 579 SKVGPVQEKDKFISY----LTQMMNKDLLDSVIAYLKSQYSVTV 618
K ++ D+ + L Q + L+ +Y+V +
Sbjct: 203 IKESMIKPFDEVKAMIDNKLLQEKQNQQYNEFTQNLRDKYTVEI 246
>gi|167765432|ref|ZP_02437545.1| hypothetical protein BACSTE_03822 [Bacteroides stercoris ATCC
43183]
gi|167697060|gb|EDS13639.1| hypothetical protein BACSTE_03822 [Bacteroides stercoris ATCC
43183]
Length = 455
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 29/287 (10%), Positives = 76/287 (26%), Gaps = 23/287 (8%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ + + ++ + K + E+ K+ + E S +
Sbjct: 161 RYFKDLPQDSIPYIPTQVEVQIITQQPKVPLEEIENVKKRLRDFTDRITKGETSFST-LA 219
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ A + + + F DP V G ++ I++
Sbjct: 220 RMYSEDRGSAIRGGEIEFSGRGMLDPAYANVAFNLQDPNKVSKIVESEYGFHIIQLIEKR 279
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ + + ++ ++ + + + +F + L T
Sbjct: 280 GDRIKTRHILLKPHIP-----EESLTAGMARLDSIADDIRNGKFSFEEAASVLSQDKDTR 334
Query: 532 NQ--------INRMDNENKFFGYDGISQVFSGPVEMVKCFPI-----ENGLSYVVFKVTN 578
N N E + + V V + V+ K+ +
Sbjct: 335 NNHGLLPNPNTNTSKFEMQELPPEIAKVVDKMKVGEISEAFTMIPQKTGKEECVIVKLKS 394
Query: 579 S----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K + + + ++LD I + V +++N
Sbjct: 395 RTNGHKATVADDYQNLKEIVLEKRRDEMLDKWIREKQKHTYVRINEN 441
>gi|90424481|ref|YP_532851.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB18]
gi|90106495|gb|ABD88532.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB18]
Length = 346
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 13/134 (9%), Positives = 46/134 (34%), Gaps = 6/134 (4%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
K + ++ + G +F + +++ T + + + SQ+
Sbjct: 205 RKKLDDVLKKAKAPGADFAALARSVSDDAATAERDGEIGWAAEPDLKTEIRSQIVGLAKG 264
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ P+ + + K+ +++ + +D + + + +A L Q
Sbjct: 265 AI-SEPVRLDDGWHILKLLDTEASRLRSLSEVRDALVQRIRAERADANRRAYMAELLKQT 323
Query: 615 SVTVHDNLIQRYLD 628
+++ + + L+
Sbjct: 324 PPVINEIALSKLLE 337
>gi|319898023|ref|YP_004136220.1| survival protein sura homolog [Haemophilus influenzae F3031]
gi|317433529|emb|CBY81912.1| survival protein SurA homolog [Haemophilus influenzae F3031]
Length = 311
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 34/124 (27%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 185 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVMKSK 244
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + L+ +
Sbjct: 245 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATKDWVKALRKR 303
Query: 614 YSVT 617
++
Sbjct: 304 ANIQ 307
>gi|309792550|ref|ZP_07687012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
trichoides DG6]
gi|308225364|gb|EFO79130.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oscillochloris
trichoides DG6]
Length = 523
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 39/390 (10%), Positives = 94/390 (24%), Gaps = 52/390 (13%)
Query: 40 SSTVVSVGRQKVPFSSFIN----SWKQELGMISQKI----------GFVVNSERARSVGL 85
S V VG K+ + ++ +EL Q + N + +
Sbjct: 35 SRPVAQVGSAKLSRGDYWQQQRLAFARELSQNFQILALFGNNQQFAQQFANQSPLINQQI 94
Query: 86 DKK--------ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+ ++ + Q +G+ + IA
Sbjct: 95 RNQRSAEVDPAVVGQWENFQLKLQGAAQMGMSVTADEINQAIANDLALIFIPPPAVPVTP 154
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ L + + T + + L
Sbjct: 155 TATLE--LTPTVALTTTAELLPTPTATPSPTPLPSPTPSPTPGGPTSTPEPTMTPLPTPL 212
Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
+ + + ++ + + P + + + +++ + + +
Sbjct: 213 AAEANTQVGQIVDEIFRRYEVELGAVGQKPLLTKEDFRAALTAQYHEQLLNTRVQEKLVP 272
Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL------------------KKGKKFIQL 299
E P T Q++ A+ + + + G F L
Sbjct: 273 EAEFTPGDVPTKVTARQILVAVTPPAEATQEQIDALFVTAKARADALLADLRNGADFATL 332
Query: 300 AEEQGKSLS----DISLGSFSKEYIPD-----VSLADSIFSLAKKGDFTPVIHGSFGYVI 350
A E+ LGSF K+ D + + + FG+ I
Sbjct: 333 AAEESDDPGSASMGGDLGSFDKDGKADNGATYPPELVAAALALPANTLSEPVRTQFGWHI 392
Query: 351 AHVSNIK-PSFTVSFQEVKKDIANQMRITK 379
V++ P+ +E + + +
Sbjct: 393 LEVTDRTVPTEEDQLREARTKALDDWLTQQ 422
>gi|71891915|ref|YP_277645.1| peptidyl-prolyl cis-trans isomerase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|122070620|sp|Q493R5|SURA_BLOPB RecName: Full=Chaperone surA; AltName: Full=Peptidyl-prolyl
cis-trans isomerase surA; Short=PPIase surA; AltName:
Full=Rotamase surA; Flags: Precursor
gi|71796021|gb|AAZ40772.1| peptidyl-prolyl cis-trans isomerase [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 425
Score = 42.5 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 32/319 (10%), Positives = 79/319 (24%), Gaps = 6/319 (1%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S ++ I N + + +KILD L+ +
Sbjct: 26 DKIVALVNHNIILDSDIRHNIYMIQDNIL-----NGNDNILQDISHYQKILDQLIIDNLI 80
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDN-KFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q + + DH ++ I + KF ++ L E ++Y K
Sbjct: 81 FQISDQQKINIDHTQLNQMINCILNLYDMTFDKFRAYLYDIGLNYEKFYFQQYQHMLKKQ 140
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + N ++ ++ + + + + + +
Sbjct: 141 ICDHVMHDRAHILTNEINKIVKKSNIIDINKQFKLRHITFSLPIQPTPSQIDRIEYFARL 200
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
K K + + + + + + + + I + +
Sbjct: 201 LIKKKEFNNNIKELIRTYSNKNIIQIIKVHETEWVSWKDIPIIFDKYLQTINKGDVIGPI 260
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+ + K I L + + S I + L F
Sbjct: 261 ISCDGIHIVEIQDIRYKQIMLPVTKVTAKIFGIQNSCENISIVEQLLQIKENMEKSNTAF 320
Query: 339 TPVIHGSFGYVIAHVSNIK 357
+I + +
Sbjct: 321 NMMIKEKSKDICFNHYEEN 339
>gi|332878100|ref|ZP_08445830.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332684062|gb|EGJ56929.1| PPIC-type PPIASE domain protein [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 479
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 61/518 (11%), Positives = 144/518 (27%), Gaps = 52/518 (10%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+E +RK + + G+ L++ V+ + + VP S F ++
Sbjct: 1 MMETMRK----------FALWCCSLCLTGV---LYAQGNDPVVMKINGKDVPRSEFEYNF 47
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ G V +DKK +D V + L+ +
Sbjct: 48 N-------KNNGENV---------VDKKTVDEYVD------LFVNYKLKV-EAALDARYD 84
Query: 121 RSPLFHGKDNKFSHDV---FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
F + + + ++ E K Y D + ++ + +
Sbjct: 85 TLSSFKKEFRTYRDQQIRPYFVSVSAEEKELKRYYDGMKASIGPDGLIHPAHIMILVAQK 144
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + E Y L A L + K + +
Sbjct: 145 ATPEEQAKAKERIDSIYTALQQGADF-------ATLAKQCSADKGSAARGGDLGGWFAKG 197
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
++ + + S ++ + + + + + ++ + + L+
Sbjct: 198 QTMKEFEDVAFSLNKGEMSKPFQSPMGYHIVLMKDRKQLESYEELKPQLQRFLESRGLKE 257
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
++A SL S G ++E + + + + H +
Sbjct: 258 RVASMAIDSLVKGSAGKLTEEDVIEQKVRELCAKDESLKYLIQEYHDGLLLYEISTREVW 317
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
++ + K+ K E R + + + R+ ++
Sbjct: 318 DKAAKDTVGLEA----YFKAHKSKYKWDEPRYRGVVYHCKDKGLVKDVRKLLKSVDEVQW 373
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGK--DDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+D V I ++ L + D + K+ P Y + + +
Sbjct: 374 IDTLRASFNQDSVKQIRVEKNLFKKGDNAFVDHLVFKEKKEPKPSEYYPYTAVYGKKLRK 433
Query: 476 DRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ +V +V D++ AE V +E KE
Sbjct: 434 PKDWTDVRGEVVSDYQVACEAEFVRRLRETYKVEIYKE 471
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 40/353 (11%), Positives = 92/353 (26%), Gaps = 36/353 (10%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS-----LGSFSKEYIPDVSLADSIFSLAK 334
++ D + +L++G F LA++ + G F+K + +
Sbjct: 154 KERIDSIYTALQQGADFATLAKQCSADKGSAARGGDLGGWFAKGQTMKE--FEDVAFSLN 211
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
KG+ + GY I + + + + +++ K
Sbjct: 212 KGEMSKPFQSPMGYHIVLMKD----------RKQLESYEELKPQLQRFLESRGLKERVAS 261
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
+A+ + + + + + V + + Y + LL + K
Sbjct: 262 MAIDSLVKGSAGKLTEEDVIEQKVRELCAKDESLKYLIQEYHDGLLLYEISTREVWDKAA 321
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEG 514
+ +Y + R V K + + S ++ +
Sbjct: 322 KDTVGLEAYFKAHKSKYKWDEPRYRGVVYHCKDKGLVKD-VRKLLKSVDEVQWIDTLRAS 380
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS-QVFSGPVEMVKCFPIENGLSYVV 573
N + QI N K + VF E Y
Sbjct: 381 FNQDSV-----------KQIRVEKNLFKKGDNAFVDHLVFKEKKEPKPS------EYYPY 423
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
V K+ ++ + + L+ Y V ++ ++
Sbjct: 424 TAVYGKKLRKPKDWTDVRGEVVSDYQVACEAEFVRRLRETYKVEIYKEVLNTV 476
>gi|313672045|ref|YP_004050156.1| sura domain [Calditerrivibrio nitroreducens DSM 19672]
gi|312938801|gb|ADR17993.1| SurA domain [Calditerrivibrio nitroreducens DSM 19672]
Length = 298
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 33/274 (12%), Positives = 78/274 (28%), Gaps = 7/274 (2%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ + VG + + + I S+ ++ K +LD LV TL
Sbjct: 17 NRILAVVGNNIITQYEVESFNPNRVKEIYSIQDEDKRSQAIKTYY--KNVLDFLVEQYTL 74
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
++ + + I K N S LA+EGI +Y +
Sbjct: 75 EEIGKKYNVVVTEKEAEEAIDDI----IKRNNISVKDLEEALAKEGITMAQYRWQIKMDI 130
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
T + + + + + Y R++ + + ++
Sbjct: 131 LATRLKSRVINQLVVITENDIKKYVDEHQKEIGSYDEYELRYILLKDPSKLTEVRKLIKE 190
Query: 220 YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKE-KYFSPEIRTVEQLVFP 278
A ++ + IE +++ + + K + E ++ +
Sbjct: 191 KGFIAAAIQFSEDKTGKNGGYLGFVNIEHLTKDIKEKVKDLKPKELVEIESGNEVKIFYV 250
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
++ ++ K L + K + L
Sbjct: 251 ESIKSRYDLSKDQREKVIAALMDTMYKDVYKSWL 284
>gi|325292484|ref|YP_004278348.1| survival protein surA precursor / peptidyl-prolyl cis-trans
isomerase SurA [Agrobacterium sp. H13-3]
gi|325060337|gb|ADY64028.1| putative survival protein surA precursor / peptidyl-prolyl
cis-trans isomerase SurA [Agrobacterium sp. H13-3]
Length = 315
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 21/148 (14%), Positives = 42/148 (28%), Gaps = 19/148 (12%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
VP + + F+ S V V + + + ++ G
Sbjct: 21 VPMAVAPFASQAFADSTVKIV--VNKTPITNDDIARRVAFLK--LQRQSG---------- 66
Query: 83 VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
L +K + LV A + I + + V +NK + L+
Sbjct: 67 -NLAEKAREQLVDEALKREEIGRVKMSVSTQEVDAA----FARFAANNKMNPQQLTQILS 121
Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ G+ + +S +V G
Sbjct: 122 KAGVGADHFKAFIAVQMSWPRLVNARYG 149
>gi|120602307|ref|YP_966707.1| hypothetical protein Dvul_1261 [Desulfovibrio vulgaris DP4]
gi|120562536|gb|ABM28280.1| conserved hypothetical protein [Desulfovibrio vulgaris DP4]
Length = 328
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 21/182 (11%), Positives = 55/182 (30%), Gaps = 19/182 (10%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
R +A + ++ + + G +D V +V V + +
Sbjct: 9 RGVLAVLQVLAVTLLLSAGGCADDALPPG---VVATVNGHPVNMKLLQATHDAYAQSWTG 65
Query: 70 KIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
G V L + +L +LV + Q + +G + A
Sbjct: 66 AEGPSV-------EALRSQYGAVLADLVVQELVLQKLAAVGASVTDAELGAAEAEV---- 114
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ +F + L + ++ + + + + L+ T + + +L ++
Sbjct: 115 --RGDYPEGMFEAALVEDYLDLEVWREMLRRRLALTKFAQVVLRSEVAISLEEVESWYRA 172
Query: 187 FE 188
+
Sbjct: 173 HQ 174
>gi|255262339|ref|ZP_05341681.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62]
gi|255104674|gb|EET47348.1| ppic-type ppiase domain protein [Thalassiobium sp. R2A62]
Length = 281
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 32/112 (28%), Gaps = 1/112 (0%)
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
V + G +F ++ N + V V + P+
Sbjct: 151 AVQAEIEAGADFAEVAAEKSTGPSGPNGGQLGWFGPGMMVAPFEAAVVEMEVGTL-SGPV 209
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
E + + + ++V + L + + ++ I L+ +T
Sbjct: 210 ETQFGFHIITLNETRVKEAPAIETLRPELEAELQQSAIEDKITELREAAEIT 261
Score = 37.5 bits (84), Expect = 6.6, Method: Composition-based stats.
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 10/69 (14%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
+ + V ++ + + Q+ + S ILD L+
Sbjct: 26 TTADTVVATINGTDITVG----HMIITRAQLPQQY-QQFPPDVLFSG-----ILDQLIQQ 75
Query: 97 ATLDQFIED 105
L Q +++
Sbjct: 76 TLLSQSLKN 84
>gi|145636275|ref|ZP_01791944.1| stationary-phase survival protein SurA [Haemophilus influenzae
PittHH]
gi|145270440|gb|EDK10374.1| stationary-phase survival protein SurA [Haemophilus influenzae
PittHH]
Length = 290
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 164 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSK 223
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT + G K L +D + + L+ +
Sbjct: 224 QG-VISAPFKTEFGWHILEVTGVRDGDLTAEAYTQKAYERLVNTQLQDATNDWVKALRKR 282
Query: 614 YSVT 617
++
Sbjct: 283 ANIQ 286
>gi|118349652|ref|XP_001008107.1| hypothetical protein TTHERM_00006260 [Tetrahymena thermophila]
gi|89289874|gb|EAR87862.1| hypothetical protein TTHERM_00006260 [Tetrahymena thermophila
SB210]
Length = 1019
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 48/546 (8%), Positives = 160/546 (29%), Gaps = 7/546 (1%)
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR---SPLFHGKD 129
+ + + L + IL+ L+ +I ++ + + + + ++
Sbjct: 284 KQYDEQHLYNNLLSQFILEQKKEIVLLETLKSNILIQISDEIIQEAVQKFVLLENYDEEN 343
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
F + ++ + E+ + M++ + FV + L+
Sbjct: 344 IIFVLN-YIPKENFLPFLEEIFSKFTKLMVNYHYISRWFVKNDSNESNLILSTDWSQKLY 402
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
+ N ++ K + ++I + ++ + I+
Sbjct: 403 DDPSVSPEQQVDIFLDYVQKNKIIYLQDRKMLWQTIEHKVRQIINNTYQINSFSETELIT 462
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
+L +++ +Y + E + Q V + F + L+EE+ + +
Sbjct: 463 FLKLISDFIGTGIQYSNSESENIRQCVNLKIVSYYQYFIINFQKTIQKCLSEEKWEQVQQ 522
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
++ + ++ + P + + ++N + + K
Sbjct: 523 LNYNQILSDLNSIINSPLQREFINSIQYILPELKVENIESYSPINNARYIQQSTPNIRKS 582
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL-VDFAGKDVKGK 428
+ + S E + + L + + ++ +
Sbjct: 583 SLTHIDSNNPESSDTPHLLSSPEIQNKNKELNSSEFAVIQKTELKLQKCLSESAQNTPMR 642
Query: 429 EVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
+ L F T+ + G +++ + + ++ E + ++
Sbjct: 643 DSLTKKDNITTLDDQFINQIKFQSQSTIRMTQGIMNCLRLIKILWPVQLQIYEAMKEIID 702
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
+ K E + N+ ++E + +F + +
Sbjct: 703 YYFIRKFKLEHMNANNESLIETHENNMDFIMEQYLIQKKYQKSRDFIIQQYSKFGDNTIV 762
Query: 549 ISQVF-SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM-MNKDLLDSV 606
I Q + + S+ +F+ + ++ + + + + + L+ ++ S+
Sbjct: 763 IPQNYQNIDPNQKILDDQNQKRSFSLFEGLDFQLPEISQGEAYNNLLSSRIISNQSFLSL 822
Query: 607 IAYLKS 612
I+ L+
Sbjct: 823 ISLLEK 828
>gi|307571805|emb|CAR84984.1| protein export peptidyl-prolyl isomerase protein [Listeria
monocytogenes L99]
Length = 279
Score = 42.5 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 2/231 (0%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K E ++ I + +DV K V
Sbjct: 20 DVTKDELYDAMKDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLA 79
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ K L + + + D+ L++ + D +KA +
Sbjct: 80 QSGLTEKSFKSQLKYNLLVQKATEANTDTSDKVLKKYYETWQPDITVSHILVADENKAKE 139
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
V + K+G F D+ K T ++ ++ + P
Sbjct: 140 -VEQKLKDGAKFADLAKEYSTDTATKENGGQLAPFGPGKMDPAFEKAAYALKNKGDISAP 198
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + ++ EKDK + + ++ +++ LK +Y
Sbjct: 199 VKTQYGYHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYK 249
>gi|325108901|ref|YP_004269969.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
brasiliensis DSM 5305]
gi|324969169|gb|ADY59947.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
brasiliensis DSM 5305]
Length = 365
Score = 42.5 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 25/295 (8%), Positives = 86/295 (29%), Gaps = 26/295 (8%)
Query: 33 ALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
+L S + V Q + + + + +++L+N
Sbjct: 53 SLGQPQQSPALARVNGQTITYDIVARECFER---------------------IGEEVLEN 91
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
+++ + E G++ + E+ + GK N + G++ +Y
Sbjct: 92 MINRTVIHVETERRGVQVTEADINNEVTKIA---GKFNLPVDTWYQMLQTERGLSPMQYR 148
Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
+ + + +++ + + R ++ N R + + +N
Sbjct: 149 RDVIWPMIALRKLAGEEVQISQADMQRAFQRDYGPRVRCRMIMMDNVRRANEVWEKANRT 208
Query: 213 LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTV 272
++ + ++ + + + + + + + + + +
Sbjct: 209 PDEFDKLAREYSVESNSRSLGGSIPPISRYSGNQNLEDAAFRLQPGEVSGLIQVENHYVI 268
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
+ ++ + + QL EE+ + + + K D L +
Sbjct: 269 LKCEGHTEQVVTDIKDVWD--ELHAQLVEEKTQERVALVFENLKKNTRIDNYLTN 321
>gi|282891870|ref|ZP_06300349.1| hypothetical protein pah_c200o014 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498130|gb|EFB40470.1| hypothetical protein pah_c200o014 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 354
Score = 42.5 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 31/273 (11%), Positives = 72/273 (26%), Gaps = 26/273 (9%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + + + + + + V + +L +L+
Sbjct: 40 NNRVLATTNGKIITVMDVMKKMDIVFYRNFPEYASSVPARLQFYQTNWSDVLQDLIDKEL 99
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ E++ L +G V E+ F D+ + L R G+ E +
Sbjct: 100 VMADAEEMKLPLTNGDVRQEMEEI---------FGPDIIHN-LDRAGLTYDEAWNSIKGD 149
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ ++ V + + A + T +
Sbjct: 150 IIIRRMLYYRVNTKAQAQATP--------------QAIQTAYEQYAKENVRPKEWTYYMI 195
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+D K + I + + KIE D L+ N + +
Sbjct: 196 SVRDEQDEKGAKIANQIYQQLQKTPVKIETLQDNLKKWLGDNIAQ--VNVSTKFSHMENE 253
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
E + +L G +A++ + S +
Sbjct: 254 VSDENKQILATLSPGNYSKPIAQKSRATKSTVY 286
>gi|217031935|ref|ZP_03437437.1| hypothetical protein HPB128_3g54 [Helicobacter pylori B128]
gi|298736882|ref|YP_003729412.1| peptidylprolyl isomerase [Helicobacter pylori B8]
gi|216946404|gb|EEC25009.1| hypothetical protein HPB128_3g54 [Helicobacter pylori B128]
gi|298356076|emb|CBI66948.1| peptidylprolyl isomerase [Helicobacter pylori B8]
Length = 299
Score = 42.5 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 18/222 (8%), Positives = 54/222 (24%), Gaps = 9/222 (4%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + R +V + + A+ + + F + + + K
Sbjct: 83 DQAIRTALVENEAKTEKLDSTPEFKAMMEAVKKQALVEFWAKKQAEEVKKIQIPEKEMQD 142
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + +E + +S Q + + +
Sbjct: 143 FYNANKDQ-----LFVKQEAHARHILVKTEDEAKRIISEIDKQPKTKKEAKFIELANRDT 197
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
S N + + D F+ P++ Y + + +
Sbjct: 198 IDPNSKNAQNGGDLGKFQKNQMALDFSKAAFALTPGNYTKTPVKTEFGYHIIYLISKDSP 257
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTVHD 620
++ + M+ + L I L+ + ++
Sbjct: 258 VTYTYEQAKPTIKGMLQEKLFQERMNQRIEELRKHAKIVINK 299
>gi|172056725|ref|YP_001813185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium
sibiricum 255-15]
gi|259534741|sp|B1YK87|PRSA_EXIS2 RecName: Full=Foldase protein prsA; Flags: Precursor
gi|171989246|gb|ACB60168.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Exiguobacterium
sibiricum 255-15]
Length = 304
Score = 42.5 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 36/239 (15%), Positives = 72/239 (30%), Gaps = 7/239 (2%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + + + + + D + K P KEQ +
Sbjct: 39 DVQDEAYQKAGAQIAFQQTMNKLLEKEYGKKVTDKEVEAEVKKTKDQFPDKEQFNTTLQT 98
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
K+ L + D+++E+ K + K E S+A
Sbjct: 99 AGIKNEKEFEKVLRTQMLLKEAKSAKSKVTDKEIEDRFNQEKVEVKASHILVEKESEAKA 158
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564
+ + + G +F I K + + + + + F VE P
Sbjct: 159 IKKQLDEGG-DFAKIAKAKSTDTGSATKGGDLGYFTKGKMVEEFENYAFKDGVEGKISDP 217
Query: 565 IENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLL-DSVIAYLKSQYSVTV 618
I+ Y + KVT+ K +E D+ L + + + + + L +Y V V
Sbjct: 218 IKTQFGYHIIKVTDRKEKKDFTLEKESDRIKKALAEEKSAQVNPNDIYRSLMKKYDVKV 276
>gi|99082756|ref|YP_614910.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
gi|99039036|gb|ABF65648.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. TM1040]
Length = 283
Score = 42.2 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 22/101 (21%)
Query: 5 IRK---ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+RK + V + F ++ ++ V +V + + + I +
Sbjct: 1 MRKGLTFLQGVVFATAFGLAAPAFA---------ELNANTVVATVNGEDITVGNMIVARA 51
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
+ L K +LD L+ L Q
Sbjct: 52 KLPAQYQS----------LPDDLLFKALLDQLIQQTVLKQQ 82
>gi|126725343|ref|ZP_01741185.1| PPIC-type PPIASE domain [Rhodobacterales bacterium HTCC2150]
gi|126704547|gb|EBA03638.1| PPIC-type PPIASE domain [Rhodobacterales bacterium HTCC2150]
Length = 407
Score = 42.2 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 20/154 (12%), Positives = 49/154 (31%), Gaps = 17/154 (11%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+++ LI +L + + V+V + V + L ++
Sbjct: 8 ILVIGALLIAPAQISLAQSNPFAAAVTVDNRAVTYFEIEQR-AAFLDVLRA--------- 57
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
+ K + LV+ + +G++ + + +A K F+
Sbjct: 58 ---PGNVLKTARETLVNERLQLNAAQSLGIQINQEELAVGMAE----FAKRANLKTAEFI 110
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
+ ++GI + + D L+ +V G
Sbjct: 111 KAIGQDGIEPETFQDFVRAGLTWRKLVQNRFVGR 144
>gi|158423053|ref|YP_001524345.1| putative peptidyl-prolyl cis-trans isomerase [Azorhizobium
caulinodans ORS 571]
gi|158329942|dbj|BAF87427.1| putative peptidyl-prolyl cis-trans isomerase [Azorhizobium
caulinodans ORS 571]
Length = 304
Score = 42.2 bits (96), Expect = 0.26, Method: Composition-based stats.
Identities = 12/124 (9%), Positives = 33/124 (26%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+A L ++ + F ++ + + +
Sbjct: 169 AARERAQTLAAVLARAPERFAELARAQS-DCPSAGVGGSLGQIGPGDTTPEFEAALKALT 227
Query: 558 EMVKCFPIENGLSYVVFKVTN----SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P+E + +V + +D+ +YL + + +A L +
Sbjct: 228 PGVISEPVETRYGVHLIRVNRHVDGRTLPFEAVRDQIAAYLADHVTRAAHAQYVALLIGR 287
Query: 614 YSVT 617
+
Sbjct: 288 ADIQ 291
>gi|145638627|ref|ZP_01794236.1| stationary-phase survival protein SurA [Haemophilus influenzae
PittII]
gi|145272222|gb|EDK12130.1| stationary-phase survival protein SurA [Haemophilus influenzae
PittII]
Length = 311
Score = 42.2 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 185 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSK 244
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT ++ G K L +D + + L+ +
Sbjct: 245 QG-VISAPFKTEFGWHILEVTGTRDGDLTSEAYTQKAYERLVNTQLQDATNDWVKALRKR 303
Query: 614 YSVT 617
++
Sbjct: 304 ANIQ 307
>gi|111225580|ref|YP_716374.1| hypothetical protein FRAAL6236 [Frankia alni ACN14a]
gi|111153112|emb|CAJ64859.1| hypothetical protein FRAAL6236 [Frankia alni ACN14a]
Length = 247
Score = 42.2 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 26/110 (23%), Gaps = 7/110 (6%)
Query: 27 IWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM-----ISQKIGFVVNSERAR 81
+ G + + VG Q + + ++ L + Q+ G
Sbjct: 2 LVGTAGTACTTPAGD-AARVGSQSIETAQVRGIVERGLAAARTVPVQQQPGQTAPPA-LD 59
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
L + L LV L + + + +
Sbjct: 60 PAKLAVRALSTLVQLDVLSDEARRRNITVRPQDLASYYRAYAILQYGSVQ 109
>gi|328882952|emb|CCA56191.1| putative lipoprotein [Streptomyces venezuelae ATCC 10712]
Length = 214
Score = 42.2 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLVSGATLD 100
VG +++ SS + + ++ ++ G L ++ L+ ++ +D
Sbjct: 31 AAAVVGGERIDVSSLQAQVEDVRA---AQERSPQAAQLVQATGDLPRRKLNGMIFDRVVD 87
Query: 101 QFIEDIGLEADHGRVWGE 118
+ D G+ A +
Sbjct: 88 KVAADHGVTATRAELQQT 105
>gi|225627181|ref|ZP_03785219.1| Chaperone surA precursor [Brucella ceti str. Cudo]
gi|260168435|ref|ZP_05755246.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella sp. F5/99]
gi|261757897|ref|ZP_06001606.1| SurA domain-containing protein [Brucella sp. F5/99]
gi|225618016|gb|EEH15060.1| Chaperone surA precursor [Brucella ceti str. Cudo]
gi|261737881|gb|EEY25877.1| SurA domain-containing protein [Brucella sp. F5/99]
Length = 318
Score = 42.2 bits (96), Expect = 0.27, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 48/199 (24%), Gaps = 17/199 (8%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L + ++ F+ S V V + S +
Sbjct: 6 PLIASMLGAAVCLTALGTVAAPAFAAGESEVKVIVSGNAITNSDIKHRM----------- 54
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +S L++ + L ++ G+ V A NK
Sbjct: 55 --AFLKLQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAG----FASRNK 108
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + G+ + + + + +V + + +
Sbjct: 109 MTLAQLNQVMNQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKK 168
Query: 192 VDYIVLNNRHVPAIADPSN 210
+ + V + S
Sbjct: 169 PVATEYHLQQVIFVVPASK 187
>gi|312623383|ref|YP_004024996.1| hypothetical protein Calkro_2356 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203850|gb|ADQ47177.1| hypothetical protein Calkro_2356 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 237
Score = 42.2 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 14/176 (7%), Positives = 43/176 (24%), Gaps = 4/176 (2%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINS--WKQELGMISQKIGFVVNSERARS--VGLDKKILDN 92
+ S + V + + +++ + K+G + + K++L+
Sbjct: 48 SNNSDIIAKVDGIPIYKKDLEIAELYEKVRFDNTVKLGAIAKQNTLVTPYQKTKKELLNE 107
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
L+ L + + G + + Y
Sbjct: 108 LIERKALMESAKKEGYLVSKEEAEAYFNNVKKTIDDVLNGKIKGDIENAKQAKEVLDMYK 167
Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
++ V+ + + S L + + E+ + +
Sbjct: 168 TQLSENEFNEKVISAYQEILTISKYLNAKVDEYVKEHPNATPDEVKKFINDFKKKV 223
>gi|297620505|ref|YP_003708642.1| hypothetical protein wcw_0261 [Waddlia chondrophila WSU 86-1044]
gi|297375806|gb|ADI37636.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
Length = 788
Score = 42.2 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 63/642 (9%), Positives = 174/642 (27%), Gaps = 48/642 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDAL-FSVSGSSTVVS-VGRQKVPFSSFIN 58
ML I RK R ++ + V+ + F +G L + TV V V S
Sbjct: 1 MLAIFRKYQR-FLYLVITCVIVISFSFFGTYSGLQNAQPADKTVFQAVDGSDVARSELEE 59
Query: 59 SW------KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
++ ++ + G ++ + L L++ ++ ++
Sbjct: 60 MAAFIGTDNEDKMLLGGRWGPNFLNDGVVKKDFLETGLGALLAKPFMNDLRSEL------ 113
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
+ H + K F+S I E + D
Sbjct: 114 -----LTRQQRERHYQSYKHPQAQFISAENAWNILAPEMNKRLADLRKVKDPATEEGFDA 168
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
R + L ++ + + + V + + L + D++ + R+
Sbjct: 169 RVNLFLAERKFPHPALRMVLGHQQKQYKWVAPDPNLNYIDLALFGYHTADDWFGSRFIRL 228
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
+ + + + + L++
Sbjct: 229 VSEFIINSAIIAQEKGYTVSRKEALADLYRNAELSFQQNGSNPNLGVANAHQYFQEQLRR 288
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
A + L + + D + + GS + +
Sbjct: 289 MGLDANRAAALW---QKVMLFRRLFHDLGNSVWIDPYTLANFQHFAKETVEGSLYQLPEN 345
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
+ F+ +A++ ++ + +K +++ + + + +I
Sbjct: 346 LRLTDFRDLQRFEVYLSAVADRPTSGMGMLELPKTWKSVDQIVQETPELVQRRYVLEIAQ 405
Query: 413 IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESI 472
+D + + + + L + F + + + Y ++ +
Sbjct: 406 VDKKNLQAKVGVKDTWDWQVQDHSWEKLKQKFPELGVKAGSNEQE----RYAALESLD-Q 460
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK--------NFRDIGKNL 524
R R + + V ++ + V+ K+G N ++ L
Sbjct: 461 KTRSRVDAYSREQIVDEHSEWLDQALVEAEPVETVVGIRKKGNVGIIAGLLNPEELITLL 520
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF---------K 575
+ +++ + + + F + + SG + +G + +
Sbjct: 521 DQYPESRSKLEKYSADGQSFYRIAVKEKASGYETLTFEAAKNDGTLDRLVDARLKAAYPQ 580
Query: 576 VTNSKVGPVQEKD---KFISYLTQMMNKDLLDSVIAYLKSQY 614
V E+D K + Q + + +++ ++ Y
Sbjct: 581 VREDDPKAFSERDGSWKPFEQVKQKVAEYEFANILQAIRDDY 622
>gi|315649028|ref|ZP_07902122.1| hypothetical protein PVOR_27600 [Paenibacillus vortex V453]
gi|315275709|gb|EFU39063.1| hypothetical protein PVOR_27600 [Paenibacillus vortex V453]
Length = 256
Score = 42.2 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 16/185 (8%), Positives = 51/185 (27%), Gaps = 11/185 (5%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
D + S VV + + S ++ + K + + + S+ A +L
Sbjct: 73 DRIRSGPNPDWVVKDEKVNISLSDYVLAKKNRDLIYALNQVVEIPSDEA--------LLQ 124
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF---VSRLAREGINE 148
++V+ + + G+ V + + + + R I
Sbjct: 125 DMVTKQLTVNYAKQSGIVVTPEEVSEAVHFQKAALDEADPNDENHQLIRYMMENRIRITS 184
Query: 149 KEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + ++L D++ + + + + ++
Sbjct: 185 MTTEEFWNSDEVYEAYETSLYISKFLQSILTDESMKGMDSYQQLQEKLFDDFQKAHPIKV 244
Query: 209 SNAVL 213
+ +
Sbjct: 245 PDFDV 249
>gi|311233706|gb|ADP86560.1| SurA domain protein [Desulfovibrio vulgaris RCH1]
Length = 328
Score = 42.2 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 21/182 (11%), Positives = 55/182 (30%), Gaps = 19/182 (10%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
R +A + ++ + + G +D V +V V + +
Sbjct: 9 RGVLAVLQVLAVTLLLSAGGCADDALPPG---VVATVNGHPVNMKLLQATHDAYAQSWTG 65
Query: 70 KIGFVVNSERARSVGLDKK---ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
G V L + +L +LV + Q + +G + A
Sbjct: 66 AEGPSV-------EALRSQYGAVLADLVVQELVLQKLAAVGASVTDAELGAAEAEV---- 114
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ +F + L + ++ + + + + L+ T + + +L ++
Sbjct: 115 --RGDYPEGMFEAALVEDYLDLEVWREMLRRRLALTKFAQVVLRSEVAISLEEVESWYRG 172
Query: 187 FE 188
+
Sbjct: 173 HQ 174
>gi|306845285|ref|ZP_07477861.1| Chaperone surA precursor [Brucella sp. BO1]
gi|306274444|gb|EFM56251.1| Chaperone surA precursor [Brucella sp. BO1]
gi|326538427|gb|ADZ86642.1| chaperone surA precursor [Brucella melitensis M5-90]
Length = 317
Score = 42.2 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 48/199 (24%), Gaps = 17/199 (8%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L + ++ F+ S V V + S +
Sbjct: 5 PLIASMLGAAVCLTALGTVAAPAFAAGESEVKVIVSGNAITNSDIKHRM----------- 53
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +S L++ + L ++ G+ V A NK
Sbjct: 54 --AFLKLQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAG----FASRNK 107
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + G+ + + + + +V + + +
Sbjct: 108 MTLAQLNQVMNQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKK 167
Query: 192 VDYIVLNNRHVPAIADPSN 210
+ + V + S
Sbjct: 168 PVATEYHLQQVIFVVPASK 186
>gi|16078059|ref|NP_388876.1| molecular chaperone lipoprotein [Bacillus subtilis subsp. subtilis
str. 168]
gi|221308834|ref|ZP_03590681.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. 168]
gi|221313157|ref|ZP_03594962.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221318081|ref|ZP_03599375.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. JH642]
gi|221322356|ref|ZP_03603650.1| molecular chaperone [Bacillus subtilis subsp. subtilis str. SMY]
gi|131027|sp|P24327|PRSA_BACSU RecName: Full=Foldase protein prsA; Flags: Precursor
gi|39782|emb|CAA40543.1| 33kDa lipoprotein [Bacillus subtilis subsp. subtilis str. 168]
gi|2226124|emb|CAA74418.1| 33kDa lipoprotein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633331|emb|CAB12835.1| molecular chaperone lipoprotein [Bacillus subtilis subsp. subtilis
str. 168]
Length = 292
Score = 42.2 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 45/169 (26%), Gaps = 31/169 (18%)
Query: 483 LTDVKKDWKTVKTAE---------------------------EVSSKANQLVLEYSKEGK 515
VK + T K A+ K + V + K+G+
Sbjct: 102 KEQVKYELLTQKAAKDNIKVTDADIKEYWEGLKGKIRASHILVADKKTAEEVEKKLKKGE 161
Query: 516 NFRDIGKNLGASLLTTNQINRM-DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
F D+ K + + + F V P++ Y +
Sbjct: 162 KFEDLAKEYSTDSSASKGGDLGWFAKEGQMDETFSKAAFKLKTGEV-SDPVKTQYGYHII 220
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDN 621
K T + K + S + + D + + + + + V D
Sbjct: 221 KKTEERGKYDDMKKELKSEVLEQKLNDNAAVQEAVQKVMKKADIEVKDK 269
>gi|315453564|ref|YP_004073834.1| major antigenic peptide PEB3\Peptidyl-prolylcis-transisomerase C
[Helicobacter felis ATCC 49179]
gi|315132616|emb|CBY83244.1| major antigenic peptide PEB3\Peptidyl-prolylcis-transisomerase C
[Helicobacter felis ATCC 49179]
Length = 291
Score = 42.2 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 43/147 (29%), Gaps = 12/147 (8%)
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKN-----FRDIGKNLGASLLTTNQINRMD-- 538
V+++ + + + A +++ E +K K F I T N N D
Sbjct: 139 VQQEAQARHILVKTEADARRIISELNKVPKTKVEHEFIKIANRDSIDPNTKNTKNGGDLG 198
Query: 539 -NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
+ + VF P++ Y V + + + + +
Sbjct: 199 KFQKSQMTPEFSKAVFELRPGTYTKTPVKTEFGYHVVYLMHKSQPVTPTFAQAKQSIIGI 258
Query: 598 MNKDLLDSV----IAYLKSQYSVTVHD 620
+ + + L+ Q V +
Sbjct: 259 LKEQQFQEYVKGELEKLRKQVVVDIKP 285
>gi|309750126|gb|ADO80110.1| Putative survival protein SurA-like protein [Haemophilus influenzae
R2866]
Length = 313
Score = 42.2 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGP 556
+ + ++ + F D L+ N + + + V
Sbjct: 187 QAKKQLAKIRSDIIAGKTTFADAALKYSKDYLSGANGGSLGYAFPETYAPQFAQTVVKSK 246
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
V P + + + +VT ++ G K L +D + + L+ +
Sbjct: 247 QG-VISAPFKTEFGWHILEVTGTRDGDLTSEAYTQKAYERLVNTQLQDATNDWVKALRKR 305
Query: 614 YSVT 617
++
Sbjct: 306 ANIQ 309
Score = 37.1 bits (83), Expect = 9.3, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 50/163 (30%), Gaps = 29/163 (17%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ +V + FL+ ++ A V +V V S
Sbjct: 2 KMKKFVLRSFLLAALGCVAFVSMAQA-----EERVVATVDGIPVLESQV----------- 45
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+G + + +D ++ + + +++ G++ D + + + +G
Sbjct: 46 RANMGKKGD---------RQSAIDKIIDDILVQKAVQESGVKIDPREIDHVVEDTAARNG 96
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ F+ L +GI+ + + V +
Sbjct: 97 ----LTYGQFLDALDYQGISLNAFRQQIANQMMMGAVRNKAIQ 135
>gi|300022454|ref|YP_003755065.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
denitrificans ATCC 51888]
gi|299524275|gb|ADJ22744.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Hyphomicrobium
denitrificans ATCC 51888]
Length = 292
Score = 42.2 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 37/124 (29%), Gaps = 5/124 (4%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+A + + E F ++ + A T + + + + S
Sbjct: 157 AARERATSIAAVLATEPDQFAELARAWSACPSATLGGSLGQIAPGDTTEEFEAALVSLAP 216
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ P+E V ++ G +++ +YL + + IA L +
Sbjct: 217 GEI-SGPVETRYGVHVIRLNRRIEGNTLPFEAVRERIEAYLDDHVRRQATAQYIALLVGR 275
Query: 614 YSVT 617
+
Sbjct: 276 ADIR 279
>gi|213022578|ref|ZP_03337025.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 335
Score = 42.2 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 17/243 (6%), Positives = 58/243 (23%), Gaps = 8/243 (3%)
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
+ ++ + ++ + K+ D I +
Sbjct: 93 NPTSEQVNDAQRQAESIVEEARNGADFGKLAI--TYSADQQALKGGQMGWGRIQELPGIF 150
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEV 499
+ + G ++ ++ + EV + + ++
Sbjct: 151 AQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQSQSISVTEVHARHILLKPSPIMNDQQA 210
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVE 558
K ++ + F K + NQ + F +
Sbjct: 211 RLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKG 270
Query: 559 MVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ P+ + + + ++ +KD+ L + + + ++
Sbjct: 271 QI-SAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAY 329
Query: 616 VTV 618
V +
Sbjct: 330 VKI 332
>gi|86742606|ref|YP_483006.1| hypothetical protein Francci3_3927 [Frankia sp. CcI3]
gi|86569468|gb|ABD13277.1| hypothetical protein Francci3_3927 [Frankia sp. CcI3]
Length = 239
Score = 42.2 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 3/88 (3%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG---LDKKILDNLVSGAT 98
VG Q + S + L + ++S+ L ++ L LV
Sbjct: 13 AAAQVGSQTIGTSQLRGIVDRGLKAAQTVPIPQTSQSASQSLNRGELQRRTLTTLVQLEL 72
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFH 126
+ + +G+ + +
Sbjct: 73 ISGEAKRLGISLTGQDIASYYQAYAILQ 100
>gi|254249300|ref|ZP_04942620.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
PC184]
gi|124875801|gb|EAY65791.1| Parvulin-like peptidyl-prolyl isomerase [Burkholderia cenocepacia
PC184]
Length = 410
Score = 42.2 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 39/127 (30%), Gaps = 23/127 (18%)
Query: 6 RKASRTWVAKIFLVVL--FVPFL-IWGLSDALFSVSGS-----STVVSVGRQKVPFSSFI 57
R + + K + + + + G++ + + +G+ V V + S
Sbjct: 125 RSIIKDSIMKTRIQAIPAVIALVCATGMTSVVAAEAGTATLPKGVVAVVNNMPIAQSDVD 184
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
S +A + L + +L+ ++Q + V G
Sbjct: 185 AIVS--------------ASGQADTPALRDAVKRDLIVRQLVEQAADKANYG-SRPEVQG 229
Query: 118 EIARSPL 124
++R+
Sbjct: 230 IVSRARA 236
>gi|189463692|ref|ZP_03012477.1| hypothetical protein BACINT_00023 [Bacteroides intestinalis DSM
17393]
gi|189438642|gb|EDV07627.1| hypothetical protein BACINT_00023 [Bacteroides intestinalis DSM
17393]
Length = 454
Score = 42.2 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 33/287 (11%), Positives = 80/287 (27%), Gaps = 24/287 (8%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ + + ++ + K + ED KR + E +
Sbjct: 161 RYFKDLPQDSIPYIPTQVEVQIITQQPKIPLEEIEDVKRRLREYTERVNKGESFSMLARL 220
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
D G ++ + + V +K + + + +Q+ E
Sbjct: 221 YSDDRGTAINGGEMPFTGRGYL---DPAFANVAFNLQDPNKVSKIVESEYGFHIIQLMEK 277
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
R + V + K + +++ + + + +F + L T
Sbjct: 278 RGDRIK----VRHILLKPHVPEEALMAGTARLDSIADDIRNGKFSFEEAASVLSQDKDTR 333
Query: 532 NQI--------NRMDNENKFFGYDGISQVFSGPVEMVKCFPI-----ENGLSYVVFKVTN 578
N N E + + V + V + V+ K+ +
Sbjct: 334 NNHGLLPNPNNNTSKFEMQELPPEIAKVVDNMKVGEISTAFTMIPQKTGKEECVIVKLKS 393
Query: 579 S----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K ++ + + ++LD I + V ++DN
Sbjct: 394 RINGHKATISEDYQNLKEIVLEKRRDEMLDKWIREKQKHTYVRINDN 440
>gi|222839387|gb|EEE77724.1| predicted protein [Populus trichocarpa]
Length = 235
Score = 42.2 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 46/131 (35%), Gaps = 2/131 (1%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGY 546
K++K E +A ++ E K GK F DI K + + +
Sbjct: 106 KEYKASHILVESEDRAKAIIAEI-KAGKKFEDIAKKESKDPGSGARGGDLDWANPGNYVP 164
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ + + P++ Y + ++ +++ + + ++ + Q + + L
Sbjct: 165 EFSEALIKLEKGGMTQEPVKTQFGYHIIRLDDARQAELPKFEEVKPQIVQQLQQQKLAQF 224
Query: 607 IAYLKSQYSVT 617
L+ + +
Sbjct: 225 QESLREKAKIQ 235
>gi|23501571|ref|NP_697698.1| peptidyl-prolyl cis-trans isomerase [Brucella suis 1330]
gi|62289646|ref|YP_221439.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus bv. 1 str.
9-941]
gi|82699574|ref|YP_414148.1| peptidyl-prolyl cis-trans isomerase [Brucella melitensis biovar
Abortus 2308]
gi|189023896|ref|YP_001934664.1| peptidyl-prolyl cis-trans isomerase [Brucella abortus S19]
gi|225852204|ref|YP_002732437.1| chaperone SurA [Brucella melitensis ATCC 23457]
gi|237815137|ref|ZP_04594135.1| Chaperone surA precursor [Brucella abortus str. 2308 A]
gi|254697090|ref|ZP_05158918.1| Chaperone surA precursor [Brucella abortus bv. 2 str. 86/8/59]
gi|254701467|ref|ZP_05163295.1| Chaperone surA precursor [Brucella suis bv. 5 str. 513]
gi|254704014|ref|ZP_05165842.1| Chaperone surA precursor [Brucella suis bv. 3 str. 686]
gi|254707612|ref|ZP_05169440.1| Chaperone surA precursor [Brucella pinnipedialis M163/99/10]
gi|254709805|ref|ZP_05171616.1| Chaperone surA precursor [Brucella pinnipedialis B2/94]
gi|254713809|ref|ZP_05175620.1| Chaperone surA precursor [Brucella ceti M644/93/1]
gi|254717133|ref|ZP_05178944.1| Chaperone surA precursor [Brucella ceti M13/05/1]
gi|254729986|ref|ZP_05188564.1| Chaperone surA precursor [Brucella abortus bv. 4 str. 292]
gi|256031296|ref|ZP_05444910.1| Chaperone surA precursor [Brucella pinnipedialis M292/94/1]
gi|256060809|ref|ZP_05450969.1| Chaperone surA precursor [Brucella neotomae 5K33]
gi|256113220|ref|ZP_05454088.1| Chaperone surA precursor [Brucella melitensis bv. 3 str. Ether]
gi|256159410|ref|ZP_05457188.1| Chaperone surA precursor [Brucella ceti M490/95/1]
gi|256254704|ref|ZP_05460240.1| Chaperone surA precursor [Brucella ceti B1/94]
gi|256257204|ref|ZP_05462740.1| Chaperone surA precursor [Brucella abortus bv. 9 str. C68]
gi|256264288|ref|ZP_05466820.1| SurA domain-containing protein [Brucella melitensis bv. 2 str.
63/9]
gi|256369119|ref|YP_003106627.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella microti CCM
4915]
gi|260545602|ref|ZP_05821343.1| SurA domain-containing protein [Brucella abortus NCTC 8038]
gi|260757664|ref|ZP_05870012.1| SurA domain-containing protein [Brucella abortus bv. 4 str. 292]
gi|260761491|ref|ZP_05873834.1| SurA domain-containing protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260883474|ref|ZP_05895088.1| SurA domain-containing protein [Brucella abortus bv. 9 str. C68]
gi|261218948|ref|ZP_05933229.1| SurA domain-containing protein [Brucella ceti M13/05/1]
gi|261221884|ref|ZP_05936165.1| SurA domain-containing protein [Brucella ceti B1/94]
gi|261315102|ref|ZP_05954299.1| SurA domain-containing protein [Brucella pinnipedialis M163/99/10]
gi|261317343|ref|ZP_05956540.1| SurA domain-containing protein [Brucella pinnipedialis B2/94]
gi|261321553|ref|ZP_05960750.1| SurA domain-containing protein [Brucella ceti M644/93/1]
gi|261324801|ref|ZP_05963998.1| SurA domain-containing protein [Brucella neotomae 5K33]
gi|261752010|ref|ZP_05995719.1| SurA domain-containing protein [Brucella suis bv. 5 str. 513]
gi|261754669|ref|ZP_05998378.1| SurA domain-containing protein [Brucella suis bv. 3 str. 686]
gi|265988381|ref|ZP_06100938.1| SurA domain-containing protein [Brucella pinnipedialis M292/94/1]
gi|265994631|ref|ZP_06107188.1| SurA domain-containing protein [Brucella melitensis bv. 3 str.
Ether]
gi|265997847|ref|ZP_06110404.1| SurA domain-containing protein [Brucella ceti M490/95/1]
gi|294852046|ref|ZP_06792719.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. NVSL 07-0026]
gi|297248054|ref|ZP_06931772.1| peptidyl-prolyl cis-trans isomerase SurA [Brucella abortus bv. 5
str. B3196]
gi|306842051|ref|ZP_07474724.1| Chaperone surA precursor [Brucella sp. BO2]
gi|23347483|gb|AAN29613.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella suis 1330]
gi|62195778|gb|AAX74078.1| peptidyl-prolyl cis-trans isomerase, hypothetical [Brucella abortus
bv. 1 str. 9-941]
gi|82615675|emb|CAJ10662.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella melitensis
biovar Abortus 2308]
gi|189019468|gb|ACD72190.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella abortus
S19]
gi|225640569|gb|ACO00483.1| Chaperone surA precursor [Brucella melitensis ATCC 23457]
gi|237789974|gb|EEP64184.1| Chaperone surA precursor [Brucella abortus str. 2308 A]
gi|255999279|gb|ACU47678.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella microti CCM
4915]
gi|260097009|gb|EEW80884.1| SurA domain-containing protein [Brucella abortus NCTC 8038]
gi|260667982|gb|EEX54922.1| SurA domain-containing protein [Brucella abortus bv. 4 str. 292]
gi|260671923|gb|EEX58744.1| SurA domain-containing protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260873002|gb|EEX80071.1| SurA domain-containing protein [Brucella abortus bv. 9 str. C68]
gi|260920468|gb|EEX87121.1| SurA domain-containing protein [Brucella ceti B1/94]
gi|260924037|gb|EEX90605.1| SurA domain-containing protein [Brucella ceti M13/05/1]
gi|261294243|gb|EEX97739.1| SurA domain-containing protein [Brucella ceti M644/93/1]
gi|261296566|gb|EEY00063.1| SurA domain-containing protein [Brucella pinnipedialis B2/94]
gi|261300781|gb|EEY04278.1| SurA domain-containing protein [Brucella neotomae 5K33]
gi|261304128|gb|EEY07625.1| SurA domain-containing protein [Brucella pinnipedialis M163/99/10]
gi|261741763|gb|EEY29689.1| SurA domain-containing protein [Brucella suis bv. 5 str. 513]
gi|261744422|gb|EEY32348.1| SurA domain-containing protein [Brucella suis bv. 3 str. 686]
gi|262552315|gb|EEZ08305.1| SurA domain-containing protein [Brucella ceti M490/95/1]
gi|262765744|gb|EEZ11533.1| SurA domain-containing protein [Brucella melitensis bv. 3 str.
Ether]
gi|263094548|gb|EEZ18357.1| SurA domain-containing protein [Brucella melitensis bv. 2 str.
63/9]
gi|264660578|gb|EEZ30839.1| SurA domain-containing protein [Brucella pinnipedialis M292/94/1]
gi|294820635|gb|EFG37634.1| peptidyl-prolyl cis-trans isomerase [Brucella sp. NVSL 07-0026]
gi|297175223|gb|EFH34570.1| peptidyl-prolyl cis-trans isomerase SurA [Brucella abortus bv. 5
str. B3196]
gi|306287892|gb|EFM59312.1| Chaperone surA precursor [Brucella sp. BO2]
gi|326408703|gb|ADZ65768.1| peptidyl-prolyl cis-trans isomerase, putative [Brucella melitensis
M28]
Length = 318
Score = 42.2 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 48/199 (24%), Gaps = 17/199 (8%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L + ++ F+ S V V + S +
Sbjct: 6 PLIASMLGAAVCLTALGTVAAPAFAAGESEVKVIVSGNAITNSDIKHRM----------- 54
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +S L++ + L ++ G+ V A NK
Sbjct: 55 --AFLKLQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAG----FASRNK 108
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + G+ + + + + +V + + +
Sbjct: 109 MTLAQLNQVMNQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKK 168
Query: 192 VDYIVLNNRHVPAIADPSN 210
+ + V + S
Sbjct: 169 PVATEYHLQQVIFVVPASK 187
>gi|254693438|ref|ZP_05155266.1| Chaperone surA precursor [Brucella abortus bv. 3 str. Tulya]
gi|261213691|ref|ZP_05927972.1| SurA domain-containing protein [Brucella abortus bv. 3 str. Tulya]
gi|260915298|gb|EEX82159.1| SurA domain-containing protein [Brucella abortus bv. 3 str. Tulya]
Length = 318
Score = 41.8 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 48/199 (24%), Gaps = 17/199 (8%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L + ++ F+ S V V + S +
Sbjct: 6 PLIASMLGAAVFLTALGTVAAPAFAAGESEVKVIVSGNAITNSDIKHRM----------- 54
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +S L++ + L ++ G+ V A NK
Sbjct: 55 --AFLKLQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAG----FASRNK 108
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + G+ + + + + +V + + +
Sbjct: 109 MTLAQLNQVMNQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKK 168
Query: 192 VDYIVLNNRHVPAIADPSN 210
+ + V + S
Sbjct: 169 PVATEYHLQQVIFVVPASK 187
>gi|188527492|ref|YP_001910179.1| hypothetical protein HPSH_03560 [Helicobacter pylori Shi470]
gi|188143732|gb|ACD48149.1| hypothetical protein HPSH_03560 [Helicobacter pylori Shi470]
Length = 426
Score = 41.8 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 187 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 242
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 243 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 301
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 302 IPTEIETVRYTSTNQEDLERAMADHNLEIPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 361
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 362 TPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 414
>gi|150389570|ref|YP_001319619.1| hypothetical protein Amet_1789 [Alkaliphilus metalliredigens QYMF]
gi|149949432|gb|ABR47960.1| hypothetical protein Amet_1789 [Alkaliphilus metalliredigens QYMF]
Length = 213
Score = 41.8 bits (95), Expect = 0.32, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 43/161 (26%), Gaps = 26/161 (16%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGL----------SDALFSVSGSSTVVSVGRQKVPFSSFIN 58
S+ + L ++ + F L S + V +KV F
Sbjct: 9 SQRMLIITVLSLIILAFTGCTLQGKEDATELSSQNEIQEVDEDVIALVNGEKVYKEKFEL 68
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
++ L IL L+ +Q I ++G+ A +
Sbjct: 69 LYEIM----------EPTGIYEDLNKLKVNILKTLIGEKIEEQKIRELGITASNEEAKEA 118
Query: 119 IA------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYID 153
F + + F++ + ++K Y
Sbjct: 119 YEKALDDISFEEFIENNPHIDAEDFLNGMKPALKHDKLYKQ 159
>gi|296122979|ref|YP_003630757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
limnophilus DSM 3776]
gi|296015319|gb|ADG68558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
limnophilus DSM 3776]
Length = 377
Score = 41.8 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 29/239 (12%), Positives = 74/239 (30%), Gaps = 3/239 (1%)
Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
K++LD++++ + Q E G+ V EI R D + + A GI
Sbjct: 97 KEVLDDIINRTMIQQACEAAGVTVTEEEVTAEINRIAKRFNLDVN---NWYQMLQAERGI 153
Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
N ++Y + + ++ L + + ++ ++ N R +
Sbjct: 154 NPQQYRRSVIWPMLALKKLASEKIDIKEEELNRAFVRNYGPRVKARMILMDNLRRATTVW 213
Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFS 266
+ +NA + + ++ P+ + + + + + + + +
Sbjct: 214 EKANADADNFEKYAQEFSIDPQSRALGGSVPPIPKYSGNDSLEKAAFALKEGEISGVIEV 273
Query: 267 PEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
R + + +LAE++ + + K D L
Sbjct: 274 GPSRFAIIKCEGRTVPTVNELTQEIRDSLYDELAEQKTQVSVAKTFEEIQKSTRIDNYL 332
>gi|224438394|ref|ZP_03659321.1| hypothetical protein HcinC1_10416 [Helicobacter cinaedi CCUG 18818]
gi|313144836|ref|ZP_07807029.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313129867|gb|EFR47484.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 276
Score = 41.8 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 49/151 (32%), Gaps = 23/151 (15%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
+ V + S ++ + + K +D L++ D
Sbjct: 23 VAIRVNGHAITLSE-------------------ISKLQTQMKISKKAAIDMLINERLKDD 63
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
IE + D ++ EI++ + S D ++++ R+G +EY + K L
Sbjct: 64 EIERFKISIDEFKIDEEISQIAA----NANLSKDALLAKVTRDGTTLQEYRNKIKKQLQT 119
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+++ + + + + +
Sbjct: 120 KELMQRILASNISISSEDELLSYYTKHKKEF 150
>gi|42521668|ref|NP_967048.1| hypothetical protein Bd0019 [Bdellovibrio bacteriovorus HD100]
gi|39574198|emb|CAE77702.1| ppiD [Bdellovibrio bacteriovorus HD100]
Length = 269
Score = 41.8 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 19/145 (13%), Positives = 44/145 (30%), Gaps = 25/145 (17%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K+ + +L + +S F+ + V VG++ + F + +
Sbjct: 1 MKLVISILLL------ISATAFAQKSTDVVAQVGKKTITLEDFNKKYNEVKS-------- 46
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ + ++ L++LV Q E L+ I +
Sbjct: 47 -----QTINPPTKEQFLEDLVRYEMGVQEAEKRNLQ------KDPIVQDRFNQEMYKALL 95
Query: 134 HDVFVSRLAREGINEKEYIDHYTKM 158
R+ + +++ E Y K
Sbjct: 96 EKDIGQRVQKIQVSDAEMKAWYAKN 120
>gi|145218834|ref|YP_001129543.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Prosthecochloris
vibrioformis DSM 265]
gi|145204998|gb|ABP36041.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chlorobium
phaeovibrioides DSM 265]
Length = 439
Score = 41.8 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 12/165 (7%), Positives = 33/165 (20%), Gaps = 13/165 (7%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
G + S + + L ILD L++ +
Sbjct: 36 GGDVIFRSELDSRETMTRLQY---------PDLKDDRSLRSSILDGLINQKIILAKARID 86
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFS--HDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+ + + +FS D+ ++ +
Sbjct: 87 SVSISENDIAS--SADARLRQLSRRFSSKEDMERQFGKSIEGIRRDLAGEIRSQQMIETL 144
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
G+ + R + ++ + +
Sbjct: 145 RRQKFSGVTIGYGEVMSFYRDNRDAMPTLPEEVSFSQILKFPGVT 189
>gi|313632264|gb|EFR99323.1| foldase protein PrsA [Listeria seeligeri FSL N1-067]
Length = 295
Score = 41.8 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 67/233 (28%), Gaps = 6/233 (2%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + +E ++ I + V + V
Sbjct: 34 DVTQDELYEAMKDKYGNEFVQQLTFEKILGDKYKVTDEQVDSEFKKYKSQYGDQFDAVLA 93
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ + L + + + D+ L+E + D +KA +
Sbjct: 94 QSGLTEETFKSQLKYNMLVQKATEANTDTSDKALKEYYKTWQPDITVSHILVADEAKAKE 153
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
V + K+G+ F D+ K T + ++ ++ + P
Sbjct: 154 -VEQKLKDGEKFADLAKEYSTDTATKDNGGKLAPFGPGKMDPAFEKAAYALKNKGDISDP 212
Query: 565 IENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + ++ +K ++K Q ++ +++ LK +Y
Sbjct: 213 VKTQYGYHIIQMDEPATKTTFDKDKKAVKESYLQ--SQLTTENMQKTLKKEYK 263
>gi|114704310|ref|ZP_01437218.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fulvimarina pelagi
HTCC2506]
gi|114539095|gb|EAU42215.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fulvimarina pelagi
HTCC2506]
Length = 295
Score = 41.8 bits (95), Expect = 0.33, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V +VG +++ + + +IG ER +L L+ L
Sbjct: 28 SPVVATVGEEEITEADLTAA--------QAEIGGDF--ERVPEDQRRIAVLAALIDIKVL 77
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
Q E+ L+ D ++ I + F+ +
Sbjct: 78 AQAAEEATLQ-DDAQIAATIDFLRDRTLHNAYFARE 112
>gi|242309396|ref|ZP_04808551.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
gi|239523967|gb|EEQ63833.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
Length = 275
Score = 41.8 bits (95), Expect = 0.34, Method: Composition-based stats.
Identities = 22/219 (10%), Positives = 58/219 (26%), Gaps = 5/219 (2%)
Query: 406 RREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
+ I + ++ + + +V + +
Sbjct: 56 EKLHEEEIKKHKIVATELEINDEINRIARQNQATAAQVESYIRSNGGNWENYKEEIKKGI 115
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++ K L+ V + ++ E ++ + +SK+GK + ++ G
Sbjct: 116 LKKKLYQVIAQESLKMVDENELLNYYNAHKEEFSIPQSIDVTKFFSKDGKALEALIQSNG 175
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ Q + + F+ G +VVF + +
Sbjct: 176 KEVQKGVQSENEVLQTAALNPQIV-AAFTQGKIGTFTPIYPIGDDFVVFLIKAKNNPAIL 234
Query: 586 EKDKFISYLTQ----MMNKDLLDSVIAYLKSQYSVTVHD 620
+ + + Q L+ L+S V +
Sbjct: 235 PFENVRNVVLQKIMGQKEDYLIYEYFEKLRSNAKVNIIR 273
>gi|157736637|ref|YP_001489320.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri RM4018]
gi|157698491|gb|ABV66651.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri RM4018]
Length = 269
Score = 41.8 bits (95), Expect = 0.34, Method: Composition-based stats.
Identities = 15/160 (9%), Positives = 50/160 (31%), Gaps = 7/160 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++ E+ + + + ++ + ++A ++ + K +
Sbjct: 109 IKVTEADKKDFYEKNKEKFVEPETFEASHILVKTEAEAKDIISQLDKAPNKVEKFKELSK 168
Query: 526 ASLLTTNQIN---RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
SL T + N + + S V + P++ Y V + +
Sbjct: 169 KSLDTASAKNGGALGRFAVEQMVPEFGSAVKALAKGTYSKTPVKTQFGYHVIYLKDKFPS 228
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTV 618
+ + Q++ + L+ ++ L+ + +
Sbjct: 229 KTFAYTEVEKNINQVLIGNALNKKIKELVEDLRKDAKIVI 268
>gi|254688956|ref|ZP_05152210.1| Chaperone surA precursor [Brucella abortus bv. 6 str. 870]
gi|260754445|ref|ZP_05866793.1| SurA domain-containing protein [Brucella abortus bv. 6 str. 870]
gi|260674553|gb|EEX61374.1| SurA domain-containing protein [Brucella abortus bv. 6 str. 870]
Length = 318
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 48/199 (24%), Gaps = 17/199 (8%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L + ++ F+ S V V + S +
Sbjct: 6 PLIASMLGAAVCLTALGTVAAPAFAAGESEVKVIVSGNAITNSDIKHRM----------- 54
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +S L++ + L ++ G+ V A NK
Sbjct: 55 --AFLKLQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAG----FASRNK 108
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + G+ + + + + +V + + +
Sbjct: 109 MTLAQLNQVMNQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKK 168
Query: 192 VDYIVLNNRHVPAIADPSN 210
+ + V + S
Sbjct: 169 PVATEYHLQQVIFVVPASK 187
>gi|268680813|ref|YP_003305244.1| hypothetical protein Sdel_2197 [Sulfurospirillum deleyianum DSM
6946]
gi|268618844|gb|ACZ13209.1| conserved hypothetical protein [Sulfurospirillum deleyianum DSM
6946]
Length = 283
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 26/190 (13%), Positives = 59/190 (31%), Gaps = 28/190 (14%)
Query: 22 FVPFLIWGLSDALFSVSGSSTV----VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+ F+ G + LFS + + TV + + ++ + SQ+
Sbjct: 7 VLTFVTLG-ATLLFSPANAGTVDGISLIINKEPITLYDVFK--------YSQRFNLS--- 54
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
K LD LV + I+ +G+ ++ V I +N + F
Sbjct: 55 --------KKDALDILVRQKLEEAEIKKLGISVENYEVDQYIETL----ATNNNMNTTDF 102
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
++ + + ++ EY + T L R + + + +
Sbjct: 103 LAMIRSKNVDVFEYKEELTNKLKRDKLYRKIISNKLQQISDGELKAYYDENLHEFSQANG 162
Query: 198 NNRHVPAIAD 207
+ + A+
Sbjct: 163 FDVTIYTSAN 172
>gi|148378054|ref|YP_001252595.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
str. ATCC 3502]
gi|153931321|ref|YP_001382453.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
str. ATCC 19397]
gi|153936847|ref|YP_001386006.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
str. Hall]
gi|153940453|ref|YP_001389411.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F
str. Langeland]
gi|168181156|ref|ZP_02615820.1| peptidil-prolyl isomerase family protein [Clostridium botulinum
NCTC 2916]
gi|170757604|ref|YP_001779674.1| peptidil-prolyl isomerase family protein [Clostridium botulinum B1
str. Okra]
gi|226947272|ref|YP_002802363.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A2
str. Kyoto]
gi|148287538|emb|CAL81602.1| putative peptidyl-prolyl cis-trans isomerase [Clostridium botulinum
A str. ATCC 3502]
gi|152927365|gb|ABS32865.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
str. ATCC 19397]
gi|152932761|gb|ABS38260.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A
str. Hall]
gi|152936349|gb|ABS41847.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F
str. Langeland]
gi|169122816|gb|ACA46652.1| peptidil-prolyl isomerase family protein [Clostridium botulinum B1
str. Okra]
gi|182668005|gb|EDT79984.1| peptidil-prolyl isomerase family protein [Clostridium botulinum
NCTC 2916]
gi|226843846|gb|ACO86512.1| peptidil-prolyl isomerase family protein [Clostridium botulinum A2
str. Kyoto]
gi|295317521|gb|ADF97898.1| peptidil-prolyl isomerase family protein [Clostridium botulinum F
str. 230613]
Length = 247
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 24/224 (10%), Positives = 57/224 (25%), Gaps = 6/224 (2%)
Query: 399 TSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+ E L+ A ++ + +
Sbjct: 25 SFPKERQTYLNTEKGREELIKQMIDFELSYNYAKDMKFDETEDFKKQLEATKKQLLIQVA 84
Query: 459 PDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFR 518
+ + E + + + ++ + +AN + E K G +F
Sbjct: 85 VSNALARATVSEEESKKYYEENKEEFRTQELITARHILVDSEEEANNIYEEI-KNGLDFS 143
Query: 519 DIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTN 578
+ + + + V V+ V I+ Y + V N
Sbjct: 144 EAAEKYSKCPSKAQGGSLGTFTRGQMVPEFEKAVLEAEVDKVTQA-IKTQFGYHLIIVDN 202
Query: 579 SKVGPVQEKDKFISY----LTQMMNKDLLDSVIAYLKSQYSVTV 618
K ++ D+ + L Q + L+ +Y+V +
Sbjct: 203 IKESMIKPFDEVKAMIDNKLLQEKQNQQYNEFTQNLRDKYTVEI 246
>gi|332982189|ref|YP_004463630.1| hypothetical protein Mahau_1626 [Mahella australiensis 50-1 BON]
gi|332699867|gb|AEE96808.1| hypothetical protein Mahau_1626 [Mahella australiensis 50-1 BON]
Length = 249
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 9/110 (8%), Positives = 34/110 (30%), Gaps = 12/110 (10%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINS-------WKQELGMISQKIGFVVNSERARSV 83
+ ++ T+ +VG ++ + ++ + I + I + +
Sbjct: 40 AASIRGQKSDVTIATVGNTRITQKDLDLAMLMREKTYELQSKEIKESILKDPSIKEELQN 99
Query: 84 GLDKK-----ILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
+ ++ +L++L+ L Q + + + +
Sbjct: 100 VMPEQPTKEKVLNSLIEKEILYQEAVKRNCDVSLNEAKKYLEDNKKTYDD 149
>gi|315635801|ref|ZP_07891063.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
gi|315479780|gb|EFU70451.1| peptidyl-prolyl cis-trans isomerase [Arcobacter butzleri JV22]
Length = 269
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 15/160 (9%), Positives = 50/160 (31%), Gaps = 7/160 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+++ E+ + + + ++ + ++A ++ + K +
Sbjct: 109 IKVTEADKKDFYEKNKEKFVEPETFEASHILVKTEAEAKDIISQLDKASNKVEKFKELSK 168
Query: 526 ASLLTTNQIN---RMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
SL T + N + + S V + P++ Y V + +
Sbjct: 169 KSLDTASAKNGGALGRFAVEQMVPEFGSAVKALAKGTYSKTPVKTQFGYHVIYLKDKFPS 228
Query: 583 PVQEKDKFISYLTQMMNKDLLD----SVIAYLKSQYSVTV 618
+ + Q++ + L+ ++ L+ + +
Sbjct: 229 KTFAYTEVEKNINQVLIGNALNKKIKELVEDLRKDAKIVI 268
>gi|302544793|ref|ZP_07297135.1| conserved hypothetical protein [Streptomyces hygroscopicus ATCC
53653]
gi|302462411|gb|EFL25504.1| conserved hypothetical protein [Streptomyces himastatinicus ATCC
53653]
Length = 205
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 8/94 (8%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+L L+ + S + ++ S + + G +
Sbjct: 15 ALLVCAPLLTACGGTPKAGS----AAVLDDGRITESQLQAQVRDVRD---AQSGSPRADQ 67
Query: 79 R-ARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
A S L + L ++ +++ +D G+
Sbjct: 68 LVAASGQLTQNTLIRMIQFKVIERAGQDNGIGVS 101
>gi|289435560|ref|YP_003465432.1| prsA protein, protein export protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289171804|emb|CBH28350.1| prsA protein, protein export protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 295
Score = 41.8 bits (95), Expect = 0.35, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 67/233 (28%), Gaps = 6/233 (2%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + +E ++ I + V + V
Sbjct: 34 DVTQDELYEAMKDKYGNEFVQQLTFEKILGDKYKVTDEQVDSEFKKYKSQYGDQFDAVLA 93
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ + L + + + D+ L+E + D +KA +
Sbjct: 94 QSGLTEETFKSQLKYNMLVQKATEANTDTSDKALKEYYKTWQPDITVSHILVADEAKAKE 153
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
V + K+G+ F D+ K T + ++ ++ + P
Sbjct: 154 -VEQKLKDGEKFADLAKEYSTDTATKDNGGKLAPFGPGKMDPAFEKAAYALKNKGDISDP 212
Query: 565 IENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + ++ +K ++K Q ++ +++ LK +Y
Sbjct: 213 VKTQYGYHIIQMDEPATKTTFDKDKKAVKESYLQ--SQLTTENMQKTLKKEYK 263
>gi|333029339|ref|ZP_08457400.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
coprosuis DSM 18011]
gi|332739936|gb|EGJ70418.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
coprosuis DSM 18011]
Length = 462
Score = 41.8 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 30/283 (10%), Positives = 86/283 (30%), Gaps = 18/283 (6%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ + K ++ ++ + S +D K+ + E+ +
Sbjct: 169 RFFQDLPQDSIPYIPTKVEVQIITQLPRVSLAEVDDVKKRLREYTDQVNSGEMPFST-LA 227
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + A K + + + F +P V G ++ +++
Sbjct: 228 RLYSEDLGSAMKGGEIGFMGRGMLAPEYANVAFNMQEPGKVSKIVETEFGYHIIQLVEKR 287
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK------NFRDIGKNLG 525
+ + + V + K+ ++ S AN + E G+ + ++ N G
Sbjct: 288 GDRVNTRHILLKPKVSDE-DLTKSTNKLDSLANDIRDEKFSFGEAALYLSDNKETRNNSG 346
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF----PIENGLSYVVFKVTNS-- 579
+ +R E + + + V V + + ++ +
Sbjct: 347 LMPNPYDGTSR--FEMQALPPEIAKVIEKLNVGDVSNALTMIDDKGREVCAIVRLKDRIQ 404
Query: 580 --KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
K ++ + + +L + I + + V ++D
Sbjct: 405 GHKATITEDYQNLRDLVIAEKREAILHNWIVKKQKETYVRIND 447
>gi|213581625|ref|ZP_03363451.1| peptidyl-prolyl cis-trans isomerase SurA [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
Length = 139
Score = 41.8 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 11/126 (8%), Positives = 34/126 (26%), Gaps = 5/126 (3%)
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSG 555
++ K ++ + F K + NQ + F +
Sbjct: 12 QQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKL 71
Query: 556 PVEMVKCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
+ P+ + + + ++ +KD+ L + + + ++
Sbjct: 72 HKGQI-SAPVHSSFGWHLIELLDTRKVDKTDAAQKDRAYRMLMNRKFSEEAATWMQEQRA 130
Query: 613 QYSVTV 618
V +
Sbjct: 131 SAYVKI 136
>gi|326204847|ref|ZP_08194701.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
papyrosolvens DSM 2782]
gi|325985059|gb|EGD45901.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
papyrosolvens DSM 2782]
Length = 348
Score = 41.8 bits (95), Expect = 0.36, Method: Composition-based stats.
Identities = 40/348 (11%), Positives = 82/348 (23%), Gaps = 10/348 (2%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
RK VA ++ +P + + + + V VG + + K +
Sbjct: 3 RKFVSALVAVALVLTAMIPAGNTFAAATTKTATPETYVAKVGTDNISKEDYNIFLKDAIS 62
Query: 66 MISQKIG------FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
MI + S K LDN+V +
Sbjct: 63 MIQSYFNSYNVDWNANINNMKASDYAKKLALDNVVDFKIQLSKAKAAKTALTKKETDDFN 122
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ + + G ++ Y + + ++ L
Sbjct: 123 TNMNSYLNSLAATTAEQEKIIKNETGFTLSQFKSFYNNVSIVRKFSSQTQSSYKTTDTEL 182
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
+ + + + + + + + + E K + F
Sbjct: 183 KKFYDSNKDKFYKVIVG--HILFLSNDENNQSTPQKDAEAKKKAEDTLKKVNEPNCDFAA 240
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
KE + + E +Y K + PE + S +
Sbjct: 241 LVKELSEDPGSVEKGGKYTVMKNHQYVPEFENWAVDSSRKVGDTGIVKTSYGYHVMKLMK 300
Query: 300 AEEQGKSLSDISLGSFSK--EYIPDVSLADSIFSLAKKGDFTPVIHGS 345
+ DI G SK + + D + L K I
Sbjct: 301 VYSFTQLKDDIKSGYISKRYDDDLNAWRKDKKYKLVKNESVFNAIKVP 348
>gi|224543042|ref|ZP_03683581.1| hypothetical protein CATMIT_02242 [Catenibacterium mitsuokai DSM
15897]
gi|224524067|gb|EEF93172.1| hypothetical protein CATMIT_02242 [Catenibacterium mitsuokai DSM
15897]
Length = 321
Score = 41.8 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 76/225 (33%), Gaps = 14/225 (6%)
Query: 415 LPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPA 474
L + + K G++ +K L + + K +L + +K
Sbjct: 85 LDSIKNSYKSKYGEDSYEKQFKSDLKSAGYTSESEYKKKLIYSLQYAELVKHYVKTHYDT 144
Query: 475 RDRKLEEVLT-----DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+V T +K + + + V E K+GK+F D+ K+
Sbjct: 145 VFEDYYKVATPRMISMIKISVSDPSNPTDSEKEKLKEVQELLKDGKSFGDVAKDYSDDST 204
Query: 530 TTNQ------INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP 583
T + ++ N +G FS + Y + K T++
Sbjct: 205 TKSAKGSLGVVDTTSNLTNTYGSTINEAAFSLTEGQT-SDVLTGNDGYYILKCTSTSKEK 263
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
+++K K ++ + ++ D +A+ Y + D I++ ++
Sbjct: 264 IKKKLKNVTIQSPLLTYDDQIIYLAF--KTYDIEYKDAKIKKAVN 306
>gi|15611671|ref|NP_223322.1| hypothetical protein jhp0604 [Helicobacter pylori J99]
gi|4155156|gb|AAD06185.1| putative [Helicobacter pylori J99]
Length = 413
Score = 41.8 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 27/261 (10%), Positives = 68/261 (26%), Gaps = 24/261 (9%)
Query: 46 VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
V + E+ +S + D L++ +Q IE
Sbjct: 165 VNGSPITLYQIQE-------------------EQEKSKVSKAQARDRLIAERIKNQEIER 205
Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
+ + D ++ E+A G D F L EG + K Y D + L +++
Sbjct: 206 LKIHVDDDKLDQEMAMMAQQQG----MDLDHFKQMLMAEG-HYKLYRDQLKEHLEMQELL 260
Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
+ ++ + + + + +
Sbjct: 261 RNILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLEVPGV 320
Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
+ ++I + + I ++ + I+ + +A +
Sbjct: 321 SKANEKIEMKTLNPQIAQVFISHEQGSFTPVMNGGGGQFITFYIKEKRGKNEVSFSQAKQ 380
Query: 286 AFQSLKKGKKFIQLAEEQGKS 306
+ ++ EE +
Sbjct: 381 FIAQKLVEESKDKILEEHFEK 401
>gi|313901026|ref|ZP_07834514.1| putative lipoprotein [Clostridium sp. HGF2]
gi|312953984|gb|EFR35664.1| putative lipoprotein [Clostridium sp. HGF2]
Length = 292
Score = 41.8 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 35/179 (19%), Positives = 63/179 (35%), Gaps = 14/179 (7%)
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+ K L +K A V + E S K
Sbjct: 109 NLEQYKEKSIYPGLQQKELNKKYVKAKEKAMFDSYYPVKAQIL---------EADSKKKA 159
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
+ L+ K+GK+F+ + K G++ T + N ++ S + +
Sbjct: 160 ENALKALKDGKDFKAVVKEYGST-TTYKGTEEIYNSKSGLPTTVFDKIKSTNKKGLIESV 218
Query: 565 IENGLS--YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+E+ S Y V KVTN+ +E I+ + + + D+ + AY +Y TV+D
Sbjct: 219 MEDTSSKKYYVVKVTNATPKDFEEDA--INSIVEKASTDIEPAATAYYLKKYDFTVYDK 275
>gi|296209973|ref|XP_002751793.1| PREDICTED: laminin subunit beta-1 [Callithrix jacchus]
Length = 1788
Score = 41.8 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 26/273 (9%), Positives = 73/273 (26%), Gaps = 29/273 (10%)
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV-DFAGKDVKGKEVAAIPYKE 437
K + ++ K E+ L + + + V + K +
Sbjct: 1487 KTNATKEKMDKSNEDLRNLIKQIRNFLTEDSADLDSIEAVANEVLKMEMPSTPQQLQNLT 1546
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR------KLEEVLTDVKKDWK 491
+ + + + D + + ++E+ A + V +++ K
Sbjct: 1547 EDIRERVESLSQVEVILQQSAADIARAEMLLEEAKRASKSATDVKVTADTVKEALEEAEK 1606
Query: 492 TVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
AE+ +A++ + E + + + + + + R +
Sbjct: 1607 AQVAAEKAIKQADEDIQGTQNLLTSIESETAASEETLFNASQRISELERNVEDLKRKAAQ 1666
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVGPVQEKDKFISYLTQ 596
N V+S +G V + K + + L
Sbjct: 1667 NSGEAEYIEKVVYSVKQSAEDVKKTLDGELDEKYRKVENLIAKKTEESADARRKAEMLQN 1726
Query: 597 MMNKDLLDS-----VIAYLKSQYSVTVHDNLIQ 624
L + ++ L+ +Y + ++
Sbjct: 1727 EAKTLLAQANSKLQLLKDLERKY--EDNQKYLE 1757
>gi|298480175|ref|ZP_06998373.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
D22]
gi|298273456|gb|EFI15019.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
D22]
Length = 460
Score = 41.8 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 28/291 (9%), Positives = 72/291 (24%), Gaps = 27/291 (9%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ + + ++ K ED K+ + EI
Sbjct: 161 RYFKDLPQDSIPYIPTQVEVQIITLQPKIPISEIEDVKKTLRDYTDRVTKGEIDFSTLAR 220
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
G + F DP V G ++ I++
Sbjct: 221 LYSEDKASAIKGGECGFMGRGM-MDPAYANVAFSLQDPKKVSKIVESEFGFHIIQLIEKR 279
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG------ 525
+ + + V + K E ++ + + + F D +
Sbjct: 280 GDRVNTRHILLRPKV-----SEKELTEACARLDSIADDIRANKFTFDDAAAVISQDKDTR 334
Query: 526 ------ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-----PIENGLSYVVF 574
++ + + + + D V V + + +
Sbjct: 335 NNHGIMVNINENSGVTTSKFQMQDLPQDVAKVVDKMNVGEISKAFTMINEKDGKEVCAIV 394
Query: 575 KVTNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K+ K ++ + + +++L I + V +++N
Sbjct: 395 KLKAKINGHKATIAEDYQDLKEIVMEKRREEMLQKWILDKQKHTYVRINEN 445
>gi|163737941|ref|ZP_02145357.1| preprotein translocase ATPase subunit [Phaeobacter gallaeciensis
BS107]
gi|161388557|gb|EDQ12910.1| preprotein translocase ATPase subunit [Phaeobacter gallaeciensis
BS107]
Length = 283
Score = 41.8 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 16/98 (16%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+RK V L +P ++ V +V +++
Sbjct: 1 MRKGLTYLSGLALTVALTLPI------STAAEPHANTVVATVNGEEITIG----HMIIAR 50
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
+ Q+ ++ L ILD L+ +L Q
Sbjct: 51 ATLPQQY------QQLPDDVLYDAILDQLIQQTSLKQE 82
>gi|157691720|ref|YP_001486182.1| peptidylprolyl isomerase PrsA [Bacillus pumilus SAFR-032]
gi|157680478|gb|ABV61622.1| peptidylprolyl isomerase PrsA [Bacillus pumilus SAFR-032]
Length = 292
Score = 41.8 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 22/180 (12%), Positives = 47/180 (26%), Gaps = 32/180 (17%)
Query: 479 LEEVLTDVKKDWKTVKTAEE---------------------------VSSKANQLVLEYS 511
+ + VK + T K A+ K V +
Sbjct: 99 KDYIKDQVKYELLTQKAAKANIKITDKEVKAYYDDLKGKIRASHILVADKKTADEVEKKL 158
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMD--NENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
+G+ + + + Q + + + F V + P+++
Sbjct: 159 DKGEKWDAVVSEYSTDTASAAQGGDVGWFAKEGQMDENFSKAAFKLKVNEI-SKPVKSQF 217
Query: 570 SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYL 627
Y + K T + K L D + +++ L V V D ++
Sbjct: 218 GYHIIKKTEERGKYDDMKADLKKELLDQKQADTNEIQTILNKLVKDADVKVKDKELENTF 277
>gi|145589158|ref|YP_001155755.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145047564|gb|ABP34191.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 263
Score = 41.8 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 18/153 (11%), Positives = 43/153 (28%), Gaps = 7/153 (4%)
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ V V+ + ++ K G NF DI K +
Sbjct: 111 EADLQAAYDSVKNQYAGKEYHVEHILVEKEGDAKAIIVQVKSGGNFEDIAKTKSKDPGSA 170
Query: 532 NQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ K + + + P+++ + V K+ + ++
Sbjct: 171 ANGGDLGWVTEKALVPEFSKSMVQLKNGQMTDKPVKSQFGWHVIKMVEVRDTKAPSYEEL 230
Query: 591 ISYLTQMM------NKDLLDSVIAYLKSQYSVT 617
L QM+ K ++ L+++ +
Sbjct: 231 KPQLKQMIVSDQNWQKAKFSEMMQKLRAKAKIQ 263
>gi|262278898|ref|ZP_06056683.1| ppic-type ppiase domain-containing protein [Acinetobacter
calcoaceticus RUH2202]
gi|262259249|gb|EEY77982.1| ppic-type ppiase domain-containing protein [Acinetobacter
calcoaceticus RUH2202]
Length = 351
Score = 41.8 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 23/283 (8%), Positives = 78/283 (27%), Gaps = 5/283 (1%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ I +F + + A + E +++
Sbjct: 65 QQQVMSRIKISDQDVENFLKSPQGQAALGNQVRVIHMRIAGENPQEVQSVAQEVRSNLAQ 124
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
I ++ + + L +++ DG ++
Sbjct: 125 SNDINALKKLSTANVKVEGADMGFRPLSDIPAELAARITPLQDGQTTDLISVRDGVHVLK 184
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
I+ + + + T + + E + + + + K G +F +
Sbjct: 185 LIERKQNEQKALVPQFQTRHILIQPSEVVSLENAKQIIDNIYKRLKAGDDFATLAATYSN 244
Query: 527 SLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV- 584
+ + + + ++ PV + P + + + +VT + +
Sbjct: 245 DTGSARDGGSLGWVTPGMMVPEFDKKMQEIPVGEI-SEPFQTQFGWHILQVTEKREKDMT 303
Query: 585 -QEKDKFISYLTQMMN-KDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ +++ + +DS + +++ V + D + +
Sbjct: 304 HEYQERMARQILGERQFNTEIDSWLREVRANAYVEIKDPSLDK 346
>gi|323343304|ref|ZP_08083531.1| hypothetical protein HMPREF0663_10066 [Prevotella oralis ATCC
33269]
gi|323095123|gb|EFZ37697.1| hypothetical protein HMPREF0663_10066 [Prevotella oralis ATCC
33269]
Length = 475
Score = 41.8 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 46/352 (13%), Positives = 94/352 (26%), Gaps = 41/352 (11%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADSIFSLAKK 335
++ D + LKK F +LA++ + L K D KK
Sbjct: 150 KQRVDSIYNILKKDGDFAELAKKYSSDVASARNGGELPWIEKGQTLKE--FDEKIFSMKK 207
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
G+ + GY I + + + ++ DI + +++
Sbjct: 208 GELSKPFLTPAGYHIVILKD--KGKFFPYDSLRADILKFIDQRGLRDEIINHRLDSLAKA 265
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
A + EK + ++ G Y + LL + K
Sbjct: 266 AGNGKSPDDVLAEKRIEMESKD--------AGLRNLIREYHDGLLLYEISNREVWDKAAK 317
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK 515
SY K R A ++ ++ +
Sbjct: 318 DEAGIESYFKKHKKRYKWDTPRFKG--------------IAYYTKEASDIKAVKECIKNI 363
Query: 516 NFRDIGKNLGASLLTTNQINRMDNENKFF----GYDGISQVFSGPVEMVKCFPIENGLSY 571
F + L + + I R+ E F +VF + Y
Sbjct: 364 PFDKWAEQLRKAFNN-DSILRIRVEKGVFKIGDNALVDREVFKKDT------VVAEVKGY 416
Query: 572 VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
V K+ ++ + + ++L + L+ +Y V + ++
Sbjct: 417 PYTAVYGEKLKTPKDYNDVRGLVLSDYQEELEKLWLEKLRKKYPVVIVKEVL 468
>gi|161618653|ref|YP_001592540.1| chaperone surA precursor [Brucella canis ATCC 23365]
gi|260566737|ref|ZP_05837207.1| SurA domain-containing protein [Brucella suis bv. 4 str. 40]
gi|161335464|gb|ABX61769.1| Chaperone surA precursor [Brucella canis ATCC 23365]
gi|260156255|gb|EEW91335.1| SurA domain-containing protein [Brucella suis bv. 4 str. 40]
Length = 318
Score = 41.8 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 48/199 (24%), Gaps = 17/199 (8%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L + ++ F+ S V V + S +
Sbjct: 6 PLIASMLGAAVCLTALGTVTAPAFAAGESEVKVIVSGNAITNSDIKHRM----------- 54
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +S L++ + L ++ G+ V A NK
Sbjct: 55 --AFLKLQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAG----FASRNK 108
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + G+ + + + + +V + + +
Sbjct: 109 MTLAQLNQVMNQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKK 168
Query: 192 VDYIVLNNRHVPAIADPSN 210
+ + V + S
Sbjct: 169 PVATEYHLQQVIFVVPASK 187
>gi|150014949|ref|YP_001307203.1| 3D domain-containing protein [Clostridium beijerinckii NCIMB 8052]
gi|149901414|gb|ABR32247.1| 3D domain protein [Clostridium beijerinckii NCIMB 8052]
Length = 350
Score = 41.8 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 54/147 (36%), Gaps = 18/147 (12%)
Query: 1 MLEIIR-----KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS 55
M+E +R S AKI + + + F++ ++ + V+S+ ++ F
Sbjct: 1 MIEKLRQFIRQSFSNGPKAKIIIGTIAIAFVV--VTAVTIMSIRKTLVISIDGKEATF-- 56
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKI--LDNLVSGATLDQFIEDIGLEA--- 110
++K + + Q+ G V+ + L+ K+ + + + I+ G+E
Sbjct: 57 --VTYKGTVKGVLQENGIEVSPKDKVQPSLESKVSEKETIKVKKAVPVDIKAGGMEVQLQ 114
Query: 111 -DHGRVWGEIARSPL-FHGKDNKFSHD 135
V + + +F D
Sbjct: 115 TAEDTVEDMLDAEKNTLKDQGIEFDKD 141
>gi|121591803|ref|ZP_01678995.1| survival protein SurA [Vibrio cholerae 2740-80]
gi|121546332|gb|EAX56604.1| survival protein SurA [Vibrio cholerae 2740-80]
Length = 244
Score = 41.8 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 15/239 (6%)
Query: 385 KEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVF 444
+ +L L G +++ L D+ + +F
Sbjct: 8 ETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMP---------TIFADQ 58
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKA 503
K + ++I + + EV + + + E +
Sbjct: 59 IKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQL 118
Query: 504 NQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG-YDGISQVFSGPVEMVKC 562
N+ V F ++ + + Q + + + Q+ + PV +
Sbjct: 119 NEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQI-S 177
Query: 563 FPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
P + + + +V + K+K L + + + L++ V V
Sbjct: 178 EPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEV 236
>gi|145588566|ref|YP_001155163.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145046972|gb|ABP33599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 279
Score = 41.8 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 26/97 (26%), Gaps = 14/97 (14%)
Query: 21 LFVPFLIWGLSDALFSVSGS---STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
L ++ G + F+ + SV + K + G +
Sbjct: 15 LITSSILLGCFGSAFAQQSGLPINAAASVNGAIITNDMVEQGIKVAISQ-----GQKDSP 69
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
E L K ++ V L Q E GL
Sbjct: 70 E------LRKAVIQKFVEVMLLSQQAEKDGLANSEKA 100
>gi|254466473|ref|ZP_05079884.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales
bacterium Y4I]
gi|206687381|gb|EDZ47863.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacterales
bacterium Y4I]
Length = 273
Score = 41.8 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 37/118 (31%), Gaps = 2/118 (1%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+A ++ E +G +F + K + + + V
Sbjct: 138 EEEALDVIKELD-DGADFATLAKERSTGPSGPSGGDLGWFTTGRMVPEFEEAVIKLRSGE 196
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
V P++ + V + + E D+ + L + + +++ + L + +
Sbjct: 197 V-SGPVQTQFGWHVILLNERRKTEAPEFDEVRAQLADELQQKAVEARVNELTAASEIE 253
Score = 37.5 bits (84), Expect = 6.5, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
++ V +V +++ I + + Q L ILD LV
Sbjct: 19 ANTVVATVNGEEITIGHMIMARENLPEQYKQ----------LPDDVLFNAILDQLVQQTA 68
Query: 99 LDQF 102
L Q
Sbjct: 69 LKQQ 72
>gi|260912727|ref|ZP_05919213.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Pasteurella
dagmatis ATCC 43325]
gi|260633105|gb|EEX51270.1| chaperone/peptidyl-prolyl cis-trans isomerase SurA [Pasteurella
dagmatis ATCC 43325]
Length = 311
Score = 41.8 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 50/161 (31%), Gaps = 29/161 (18%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+T K L F I + + + V +V V S
Sbjct: 3 KTLNIKSIFFALVGLFAI-----STTTQAAERVVATVNGIPVLESQV-----------KA 46
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
G G + LD + + Q I++ G++ ++ +V I
Sbjct: 47 NSGKK---------GNRQAALDKAIDDILVQQAIQNSGVKVNYAQVDQIIEGIAA----Q 93
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
N ++ F+ L +GI+ Y L T+V +G
Sbjct: 94 NGLTYGQFLDALDYQGISYNTYRQQIANQLLMTEVRNQAIG 134
Score = 41.0 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ ++ +Q+ + F D L+ + +
Sbjct: 186 QAKAQLSQIRADIMAGKMTFADAALKYSKDYLSGANGGSLGFAFPETYVGPFQKTVITSK 245
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGP---VQEKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ V P + + + +VTN++ G + + L KD + L+
Sbjct: 246 QGVISAPFKTEFGWHILEVTNTRDGDRTLDAYRQQAYEQLINSQVKDAEKDWVKALRKNA 305
Query: 615 SVT 617
+
Sbjct: 306 DIQ 308
>gi|95929247|ref|ZP_01311991.1| hypothetical protein Dace_1864 [Desulfuromonas acetoxidans DSM 684]
gi|95134745|gb|EAT16400.1| hypothetical protein Dace_1864 [Desulfuromonas acetoxidans DSM 684]
Length = 539
Score = 41.8 bits (95), Expect = 0.40, Method: Composition-based stats.
Identities = 45/509 (8%), Positives = 117/509 (22%), Gaps = 22/509 (4%)
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
+ + G +P + + +
Sbjct: 27 FWQDPPLVAINDQSWNRQDFLNWWQEWKEPGMEQPQSPDDFIDWILLSDEAEQMQLYDEP 86
Query: 200 RHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEK 259
R + + + + + ++ S + E
Sbjct: 87 RFKQKVHTFLKVRSLMMLKNEEVDEKISVSDEEIDRIYHRDYTPLLKLRSIELDSEEQCA 146
Query: 260 NKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEY 319
+ S + + E L P + + + D
Sbjct: 147 AFMQAVSQGLSSDEVLADPLLQLPQTGLSEPIVQRPNQLPPHVRTLYEQDPQTRYLPAYS 206
Query: 320 IPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK 379
D I D + + + +M
Sbjct: 207 YQDRWFILEIMQRDPGNDNDRANVAESISYTLRKDKQRELTGQLNMRLMEKYQVKMDEQG 266
Query: 380 ASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAG----KDVKGKEVAAIPY 435
++ + A+ T D + + L G KD +E+
Sbjct: 267 MKRIHEDGPEEDVAEAAMITFPDFTITGQILYKNALSHYQRFGGKEMKDTSFEEIVQRVA 326
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ----IKESIPARDRKLEEVLTDVKKDWK 491
+ + + + + Y + Q I+E +V + +
Sbjct: 327 NDIVAQSLTSMEALNRHYESKPPFQSVYFFYQRHRLIRELESKLILPYTQVSDEELSHYY 386
Query: 492 TVKTAEEV----------SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNEN 541
+ ++ ++ L+ ++ + D + S L+ I
Sbjct: 387 NEHREDYAYPVRVRYASVETRNEKMALKLREDLRQGADFYQT--LSPLSPAGIETKTTPL 444
Query: 542 KFFGYDGISQVFSGPVEMVKCFPIENGLSYV-VFKVTNSKVGPVQE-KDKFISYLTQMMN 599
+ + ++ ++ + + P + +D + LTQ
Sbjct: 445 AHLIPEMQDLIDRLQPGQSDMLEVDGYFHFIRLIEEPKVDYKPFDQIRDALKAQLTQAKF 504
Query: 600 KDLLDSVIAYLKSQYSVTVHDNLIQRYLD 628
++A L+ + ++TV+ N QR L+
Sbjct: 505 SQRRAELVAQLRQRTTITVNQNQWQRCLN 533
>gi|253576879|ref|ZP_04854204.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251843746|gb|EES71769.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 376
Score = 41.8 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 30/301 (9%), Positives = 81/301 (26%), Gaps = 2/301 (0%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ + V+ F G + + S + + ++ + F ++ + + ++
Sbjct: 2 LLIALVTVLAFSVMAGCGKNASSGGKDTSKVIATYEGGEITENEFDRE-QRIVLALQPQM 60
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ E R + ++I + D+ ++ G + + + + K+
Sbjct: 61 EQFMQMEDFRQYLVKQEIAYEYLEAKA-DEKTKEAGKKKAEEQFDLMKSSYGEENFKNML 119
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ V + + ++ + +S DV F + + F +
Sbjct: 120 DAQKVSEAEFKDYMVRIYTVMEGERQKISEDDVKKEFEATKQDYTTASVRHILINFTDPD 179
Query: 192 VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISND 251
A + + F Y + + L++ E +E
Sbjct: 180 GKERTEEETLKLAKEVKAKLDKGEDFAALAKQYSEDPGSKDNGGLYENVEVSNWVEAFKQ 239
Query: 252 ELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS 311
+ E V ++ E +K LA +
Sbjct: 240 AALTQPLNQIGDPVKTEYGYHIIRVESRTEKKFEDLTQEQKDMIQTTLASNKLDEFMAGD 299
Query: 312 L 312
L
Sbjct: 300 L 300
>gi|158312660|ref|YP_001505168.1| hypothetical protein Franean1_0804 [Frankia sp. EAN1pec]
gi|158108065|gb|ABW10262.1| conserved hypothetical protein [Frankia sp. EAN1pec]
Length = 251
Score = 41.4 bits (94), Expect = 0.42, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 28/99 (28%), Gaps = 2/99 (2%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
G+S + VG + S+ + +S ++ L +
Sbjct: 16 TGISGTACTTHAG-AAAQVGSSTIETSTVRGIVDRGFEAVSAVPAQQA-AQSLDRAELQR 73
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
+ L LV L+ + +G+ V +
Sbjct: 74 RTLTTLVQLQVLESEADRLGVTLSGQDVDAYYQAYAVLQ 112
>gi|326790212|ref|YP_004308033.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
lentocellum DSM 5427]
gi|326540976|gb|ADZ82835.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
lentocellum DSM 5427]
Length = 337
Score = 41.4 bits (94), Expect = 0.43, Method: Composition-based stats.
Identities = 29/292 (9%), Positives = 75/292 (25%), Gaps = 13/292 (4%)
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA---SEKVKEDYKR 390
+ ++ F + ++ + +A ++
Sbjct: 34 NSEKVSEPLYRIFLWSTQRGLESILPDIWDVDPIEGKTPEEFAKERALKSITYYVAVKQK 93
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
EE + +E S ++ + + K+ + E
Sbjct: 94 AEEAGINKLTKEEKSAIKESAKNYVETNKEFVTNYGIKQKDYEKFLEYGKLEEKVVSQLG 153
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEV----LTDVKKDWKTVKTAEEVSSKANQL 506
M V +E + V + + K AE +A +
Sbjct: 154 GTYIPNEEELKEAMKVLEEEGEFTSSATITHVLIKNKDEQGNTLPSDKDAE-AKKRAEDV 212
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS-GPVEMVKCFPI 565
+ + G++ + + + + + VF+ + V I
Sbjct: 213 LNQALN-GEDLTILARKYSEDAAVSTNDGQYTFKKGEMEESLEEVVFNEAKIGAVYPKLI 271
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
E + Y + KV + + + +D ++ ++ L + Y V
Sbjct: 272 ETSMGYEIVKVEELNDMDEVTMKEAA---IRKIQQDFVNHELSELSATYKVE 320
Score = 37.1 bits (83), Expect = 8.6, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 13 VAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
+++ ++++ + +G L + + V +V +KV + + +
Sbjct: 4 ISRTLIMLVLASIIAFG----LTGCAKETIVATVNSEKVSEPLYRIFLWSTQRGLESILP 59
Query: 73 FVVNSERAR----SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK 128
+ + + ++ L ++ + Q E+ G+ I S + +
Sbjct: 60 DIWDVDPIEGKTPEEFAKERALKSITYYVAVKQKAEEAGINKLTKEEKSAIKESAKNYVE 119
Query: 129 DNK 131
NK
Sbjct: 120 TNK 122
>gi|297568735|ref|YP_003690079.1| hypothetical protein DaAHT2_0756 [Desulfurivibrio alkaliphilus
AHT2]
gi|296924650|gb|ADH85460.1| hypothetical protein DaAHT2_0756 [Desulfurivibrio alkaliphilus
AHT2]
Length = 544
Score = 41.4 bits (94), Expect = 0.44, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMN----KDLLDS 605
Q +G V P+ +V ++ + + + + L + + + L
Sbjct: 191 QQALAGAVPGDVVGPLPGTHGAIVLQIIAAVESTSADLEPHRAGLERDLRRREEQRLTSE 250
Query: 606 VIAYLKSQYSVTVHDNLIQRY 626
++A L+++++V ++ L+ R
Sbjct: 251 LVARLRAKFAVEINHELLARL 271
Score = 40.6 bits (92), Expect = 0.74, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 32/106 (30%), Gaps = 7/106 (6%)
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK-CFPIENGLSYVVFKVTNSKV--- 581
S + R + V FP+ N Y + +++
Sbjct: 429 ISRHSPGGAPRQRLAVTELDPAVAAVAAELAPGEVSRLFPLHN--HYALLRLSGRHPGRL 486
Query: 582 -GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+++ L + +++ +I L+ ++ ++ QR
Sbjct: 487 QPLAAVREEIRQTLQEQKEQEVRAELINRLRQHAAIEINQPAWQRL 532
>gi|210622772|ref|ZP_03293347.1| hypothetical protein CLOHIR_01295 [Clostridium hiranonis DSM 13275]
gi|210154056|gb|EEA85062.1| hypothetical protein CLOHIR_01295 [Clostridium hiranonis DSM 13275]
Length = 166
Score = 41.4 bits (94), Expect = 0.44, Method: Composition-based stats.
Identities = 20/165 (12%), Positives = 43/165 (26%), Gaps = 6/165 (3%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVV-NSERAR 81
+ + ++ + TV V ++ + + K G + +
Sbjct: 6 LAIALGMVAVLSLTACSKGTVAKVNDTEITADDLKVAKAIITSVNEYKTGKDAEDMSKEE 65
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
L+K LV + Q G+ + ++ KF D L
Sbjct: 66 EEELEKNAATFLVDSEVVYQQAIADGITVKSEDNDSRTSELKEALKENPKFKKD-----L 120
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
G+ E+ + K F S+ + +
Sbjct: 121 EDNGVTEEALENFIAKDNVINAYRDAFNEKQTVSDAEISAYYAKH 165
>gi|325662341|ref|ZP_08150950.1| hypothetical protein HMPREF0490_01689 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471343|gb|EGC74566.1| hypothetical protein HMPREF0490_01689 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 353
Score = 41.4 bits (94), Expect = 0.44, Method: Composition-based stats.
Identities = 36/276 (13%), Positives = 78/276 (28%), Gaps = 9/276 (3%)
Query: 356 IKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ + + V + I+K + ++ E L +++ K+ +
Sbjct: 53 QQAEYETYYSGVMGEDMWSTEISKGKSYEETVKNQILETLENMYVLEDHMGDYKVEITEE 112
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ E + KE + + L+ + + E
Sbjct: 113 EKKKISEAAKAFDEANGLEEKEAVSGTTENVERMLTLVTIQEKMQKAMVADVDTEVSDEE 172
Query: 476 DRKLEEVL-----TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
+ T K+D T + EE ++A + + K K D K L
Sbjct: 173 AAQKSMQYVNLSLTKTKEDGSTEQMTEEEKAEAKKKAEAFQKAVKEEADFAKTAKEKELE 232
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ D E +++ V IE Y V KVT + + D
Sbjct: 233 VKTMT-FDEETTTPDEGLMTKANKLGEGEV-SEVIETDSGYYVLKVT--SLLDREATDAE 288
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + + K + V++ + +
Sbjct: 289 KESIAEERKEKQYKDLCEEWKKDVKIEVNEKVWDKI 324
>gi|326792525|ref|YP_004310346.1| copper amine oxidase-like domain-containing protein [Clostridium
lentocellum DSM 5427]
gi|326543289|gb|ADZ85148.1| copper amine oxidase-like domain-containing protein [Clostridium
lentocellum DSM 5427]
Length = 444
Score = 41.4 bits (94), Expect = 0.44, Method: Composition-based stats.
Identities = 36/297 (12%), Positives = 80/297 (26%), Gaps = 10/297 (3%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV---VNSERARS--VGLDKKIL 90
++G + V VG + + E+ M+ + + +E A+ +++
Sbjct: 143 GITGHAVVAKVGDLTITAKEILTQLDYEMMMLQYQYQYDDSFFETEEAKQYMEQRKGELV 202
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150
D ++ ++ LE V E ++ + +F + S L EG +
Sbjct: 203 DYIIKNKVALIKGRELKLEPTVTEVNNEFNKTKEDYETAAEFEKALVNSGLTTEGYKTQI 262
Query: 151 YIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+++ + V + + + +L A A +
Sbjct: 263 KDSLTISNVAKYISKNIPVTDAEIKAYYESNSGNYTMPPGAEMAHILVATEEEAKAIKAE 322
Query: 211 AVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIR 270
F + Y K L + + + E+ +
Sbjct: 323 YDKGTSFAELAKKYGTDGTKDTGGELGYIAYDSSYYDQDFLDGAKTLEEGQVSNPVKTQF 382
Query: 271 TVEQLVFPNQKEAD-----EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPD 322
+ N + E + K + A E S D + E D
Sbjct: 383 GWHLIKVLNVHKEAYKVLLEEIKEDLKNIIISEKATEFIYSQLDEWGKEMTIEKYED 439
>gi|237714321|ref|ZP_04544802.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
gi|262408154|ref|ZP_06084701.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294645120|ref|ZP_06722845.1| PPIC-type PPIASE domain protein [Bacteroides ovatus SD CC 2a]
gi|294809728|ref|ZP_06768415.1| PPIC-type PPIASE domain protein [Bacteroides xylanisolvens SD CC
1b]
gi|229445485|gb|EEO51276.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
gi|262353706|gb|EEZ02799.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292639544|gb|EFF57837.1| PPIC-type PPIASE domain protein [Bacteroides ovatus SD CC 2a]
gi|294443062|gb|EFG11842.1| PPIC-type PPIASE domain protein [Bacteroides xylanisolvens SD CC
1b]
gi|295088067|emb|CBK69590.1| Parvulin-like peptidyl-prolyl isomerase [Bacteroides xylanisolvens
XB1A]
Length = 460
Score = 41.4 bits (94), Expect = 0.44, Method: Composition-based stats.
Identities = 28/291 (9%), Positives = 71/291 (24%), Gaps = 27/291 (9%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ + + ++ K ED K+ + EI
Sbjct: 161 RYFKDLPQDSIPYIPTQVEVQIITLQPKIPISEIEDVKKTLRDYTDRVTKGEIDFSTLAR 220
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
G + F DP V G ++ I++
Sbjct: 221 LYSEDKASAIKGGECGFMGRGM-MDPAYANVAFSLQDPKKVSKIVESEFGFHIIQLIEKR 279
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG------ 525
+ + + V + K E ++ + + + F D +
Sbjct: 280 GDRVNTRHILLRPKV-----SEKELTEACARLDSIADDIRANKFTFDDAAAVISQDKDTR 334
Query: 526 ------ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-----PIENGLSYVVF 574
++ + + + + D V V + + +
Sbjct: 335 NNHGIMVNINENSGVTTSKFQMQDLPQDVAKVVDKMNVGEISKAFTMINEKDGKEVCAIV 394
Query: 575 KVTNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K+ K ++ + +++L I + V +++N
Sbjct: 395 KLKAKINGHKATIAEDYQDLKEIVMDKRREEMLQKWILDKQKHTYVRINEN 445
>gi|332143233|ref|YP_004428971.1| Parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str.
'Deep ecotype']
gi|327553255|gb|AEA99973.1| Parvulin-like peptidyl-prolyl isomerase [Alteromonas macleodii str.
'Deep ecotype']
Length = 264
Score = 41.4 bits (94), Expect = 0.44, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 5/136 (3%)
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
+ D K ++ E + A L+ + ++ K + +
Sbjct: 117 IASDPKDLEHRAESHALAVNLIHKLQGGESTLGELAKQFSSCPSKDVDGSLGQLSYGQTV 176
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL--- 602
+ QVF+ ++ P+E Y V V G D + Q +N +
Sbjct: 177 REFERQVFAASEGLMPQ-PVETRYGYHVVLVARKVDGKPLSFDMVREKIKQYLNDKVHRK 235
Query: 603 -LDSVIAYLKSQYSVT 617
L + L S+ +
Sbjct: 236 ALSQYLHRLVSEADIQ 251
>gi|186470963|ref|YP_001862281.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phymatum STM815]
gi|184197272|gb|ACC75235.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phymatum STM815]
Length = 259
Score = 41.4 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 17/158 (10%), Positives = 38/158 (24%), Gaps = 4/158 (2%)
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
Y P +L V + L + + G+ F
Sbjct: 87 RYYAANPGRHAPGERVHARHILFAVTPGVDIEALRRLAEASLVDLRCDAVEHGERFARAA 146
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
K L + ++F P V + + + V +
Sbjct: 147 KELSNCPTGDAGGELGWFTAAECVPELARELFGLPYVGVLPRLVATRFGFHIVDVLARER 206
Query: 582 GPVQEKDKFISYLTQMMNK----DLLDSVIAYLKSQYS 615
+ + + Q + + + L ++ L +Q
Sbjct: 207 ANTPPFETVRAAIAQTLRQHAFANALRQYVSLLAAQAE 244
>gi|326330421|ref|ZP_08196729.1| LigA [Nocardioidaceae bacterium Broad-1]
gi|325951696|gb|EGD43728.1| LigA [Nocardioidaceae bacterium Broad-1]
Length = 345
Score = 41.4 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 31/122 (25%), Gaps = 6/122 (4%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGAS-LLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
K Q V++ +++G++F + + D F
Sbjct: 204 DKDAQAVVQRARKGEDFAALARANSLDDATRDQGGALGVVPASSLAGDYAKAAFGARSGA 263
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY----LTQMMNKDLLDSVIAYLKSQYS 615
V P+ + V +V G D+ + + + +
Sbjct: 264 VFG-PVRTQFGWNVGQVVRIVPGKEPTFDQVEDQALDVVRSERALETWRDWLEGRIKKAD 322
Query: 616 VT 617
V
Sbjct: 323 VE 324
>gi|53803327|ref|YP_114963.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Methylococcus capsulatus str. Bath]
gi|53757088|gb|AAU91379.1| PpiC-type peptidylprolyl isomerase domain protein [Methylococcus
capsulatus str. Bath]
Length = 312
Score = 41.4 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 28/239 (11%), Positives = 63/239 (26%), Gaps = 7/239 (2%)
Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP 449
+ + + DE I L+ + A + F+ K+
Sbjct: 68 QRNQAYVQKSMTDEGKAEVIREIIGNQLLKDDIIKKGLAKKDATAAELGEAFQKLAKEHF 127
Query: 450 LSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
Y + ++ ++ V + + A + L
Sbjct: 128 PLPPVPEEDAVYKYYLDHQNDYGIPEMVRISQIQFRVPDNATAEQKAAARQRA--EAALR 185
Query: 510 YSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGL 569
+ G+ F + L + + + V + V IE+
Sbjct: 186 RLEAGEPFPKVAGELTENPSAKPPQGDIGFLPREGDPWLTEAVRNLKVGE-HTKVIESPA 244
Query: 570 SYVVFKVTNSK----VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQ 624
Y + +T+ + V +DK I + L D+ I L + + ++
Sbjct: 245 GYEILMLTDVRKALITPYVNVRDKVIQRMRGAEQARLRDAYIRDLAKHAKIEIVQEELK 303
>gi|15613740|ref|NP_242043.1| protein secretion (post-translocation chaperonin) [Bacillus
halodurans C-125]
gi|46397037|sp|Q9KDN4|PRSA_BACHD RecName: Full=Foldase protein prsA; Flags: Precursor
gi|10173793|dbj|BAB04896.1| protein secretion (post-translocation chaperonin) [Bacillus
halodurans C-125]
Length = 333
Score = 41.4 bits (94), Expect = 0.45, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 46/149 (30%), Gaps = 26/149 (17%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
L+ I G + + S VV V ++ + F + M+ ++ G
Sbjct: 6 LLIAGLACMTILGACNNDDAGSSGQAVVEVDGHEISDAEF-------VDMLKERYG---- 54
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
+ IL LV + Q + +E + E+ F + + D
Sbjct: 55 ----------EAILQELVQRHLISQAADS--VEIPQEEIDEELET---FKSQIGVETDDE 99
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVV 165
+ L+ + E + + +V
Sbjct: 100 MLDALSNQFGITVENKEEFVNEYILPPLV 128
>gi|332654773|ref|ZP_08420515.1| putative mucin-2 (MUC-2) (Intestinal mucin-2) [Ruminococcaceae
bacterium D16]
gi|332516116|gb|EGJ45724.1| putative mucin-2 (MUC-2) (Intestinal mucin-2) [Ruminococcaceae
bacterium D16]
Length = 426
Score = 41.4 bits (94), Expect = 0.46, Method: Composition-based stats.
Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 15/196 (7%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELG---MISQKIGF-----VVNSERARSVGLDK 87
+SG + V +VG ++ S + + +G ++E + +
Sbjct: 53 GLSGDTVVATVGDTEITADSLLYWLAATVDGTAQYYAMMGMSASDLPWDTEMEDGSTMAE 112
Query: 88 KILDNLVSGATLDQF----IEDIGLEADHG---RVWGEIARSPLFHGKDNKFSHDVFVSR 140
L+N + A L + GL + I G D H ++ S
Sbjct: 113 GFLNNALQTAALYALVPVIAQQEGLSVSDESAQTIQQAIDSFAQQAGGDAMVDHMLWSSV 172
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L R+ L + +++L + ++ ++
Sbjct: 173 LTRDLYTRMMQAGDLNTQLMNRYYGDGAPDAPKDADILTYVSDNLQIAYKAKHILLKTVD 232
Query: 201 HVPAIADPSNAVLTQW 216
I D ++
Sbjct: 233 TSKPIKDADGKATGEY 248
>gi|83815316|ref|YP_446773.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Salinibacter ruber DSM 13855]
gi|83756710|gb|ABC44823.1| PPIC-type PPIASE domain protein [Salinibacter ruber DSM 13855]
Length = 342
Score = 41.4 bits (94), Expect = 0.46, Method: Composition-based stats.
Identities = 28/273 (10%), Positives = 78/273 (28%), Gaps = 17/273 (6%)
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
+ + +A + ED + + + + R + + +L +
Sbjct: 66 QRYQQQVRMSMKRQAPSQQSEDQMQETHRQLIRGFARQHALRGEAKAQNLEVDPTQVNAR 125
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT- 484
K +EQ ++ + + ++ +Q + + + ++V
Sbjct: 126 LEKLKQRYESEEQFQKQLARNNMTVDSVRSLLADQFRQQQLQRQMAENYEEPSSDDVTAY 185
Query: 485 -----DVKKDWKTVKTAEEV--------SSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
++ +K E A LV E +F ++ +
Sbjct: 186 SEKNRRIRAQHILIKAGENAPESEVDSARKAAAALVDSAKMEDVDFAELARRHSQGPSAQ 245
Query: 532 NQINRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ ++ V P+ + V ++TN G + K
Sbjct: 246 KGGDLGFFTRDRMVDKFAEAAYALSDSGDVAPEPVRTRFGFHVIRLTN--AGEPMDTTKA 303
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+T+ + ++ I L +V + +++
Sbjct: 304 RKQMTKERRQQAVEDQINALLEDATVRTNPDIV 336
>gi|329942658|ref|ZP_08291437.1| hypothetical protein G5Q_0326 [Chlamydophila psittaci Cal10]
gi|332287253|ref|YP_004422154.1| putative exported protein [Chlamydophila psittaci 6BC]
gi|313847839|emb|CBY16833.1| putative exported protein [Chlamydophila psittaci RD1]
gi|325507071|gb|ADZ18709.1| putative exported protein [Chlamydophila psittaci 6BC]
gi|328814918|gb|EGF84907.1| hypothetical protein G5Q_0326 [Chlamydophila psittaci Cal10]
gi|328914499|gb|AEB55332.1| conserved hypothetical protein [Chlamydophila psittaci 6BC]
Length = 361
Score = 41.4 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 15/167 (8%), Positives = 42/167 (25%), Gaps = 10/167 (5%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
V I ++ + + +L++++ + +
Sbjct: 61 DDTVVTTLDVIQKLNLLFASSYPQLMESYPARSQYYTAMWPVVLESVIDEFLMVADAKAK 120
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
++ D V E+ F D+ + + + + L V+G
Sbjct: 121 KIQVDPTTVNQEVEAM---------FGRDLSFFYV-HFDMTPDDVFKVVHRTLVAQRVMG 170
Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
M V + + + Y + ++ + L
Sbjct: 171 MMVRSKVMLKITPGKIREHYNQLAEEAAKTTLWKYRVVTIKAATESL 217
>gi|238020925|ref|ZP_04601351.1| hypothetical protein GCWU000324_00822 [Kingella oralis ATCC 51147]
gi|237867905|gb|EEP68911.1| hypothetical protein GCWU000324_00822 [Kingella oralis ATCC 51147]
Length = 290
Score = 41.4 bits (94), Expect = 0.47, Method: Composition-based stats.
Identities = 26/262 (9%), Positives = 58/262 (22%), Gaps = 8/262 (3%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
TVV+V K+ S + + ++ S L + I V +
Sbjct: 22 QTVVTVNGTKIDSSELDRRVQAVVAGSQGQVQ--------DSPELRQFIAQQTVLETVVT 73
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
Q + GL+ E + D + + +
Sbjct: 74 QAAKKQGLDKSKEYKDAESESMKQAKAQGADKQADFKQQWADYQNQLLMQVYARDVINKN 133
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
+ + + E + + + A S A + + +
Sbjct: 134 PVTDAQVQQRYNEIKQRYDNTDEVQIGEIITDNAEQIKAAERDLKAKKSFAEVARKYSID 193
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
+ L D+ E I + L+
Sbjct: 194 PNIKAGGAVFSDYISLRDLQEARPNIYQAIGSLKKGQYSKPISGDKLHAVYYINDKRKIS 253
Query: 281 KEADEAFQSLKKGKKFIQLAEE 302
E + + + + +E
Sbjct: 254 IEPLDKIKEGLRAGLANERVQE 275
>gi|192360509|ref|YP_001982979.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
japonicus Ueda107]
gi|190686674|gb|ACE84352.1| putative peptidyl-prolyl cis-trans isomerase D [Cellvibrio
japonicus Ueda107]
Length = 284
Score = 41.4 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 9/66 (13%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+S V +V + + ++ + + + E L K+LD+L++
Sbjct: 32 SASVVATVNGEAITREQVDYMLERM---LGAQPLVPITRE------LRGKVLDSLIASKA 82
Query: 99 LDQFIE 104
+ ++
Sbjct: 83 MTLQVK 88
>gi|317014080|gb|ADU81516.1| hypothetical protein HPGAM_03410 [Helicobacter pylori Gambia94/24]
Length = 415
Score = 41.4 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 21/165 (12%), Positives = 45/165 (27%), Gaps = 24/165 (14%)
Query: 46 VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
V + E+ +S + D L++ +Q IE
Sbjct: 167 VNGSPITLYQIQE-------------------EQEKSKVSKAQARDRLIAERIKNQEIER 207
Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
+ + D ++ E+A G D F L EG + K Y D + L +++
Sbjct: 208 LKIHVDDDKLDQEMAMMAQQQG----MDLDHFKQMLMAEG-HYKLYRDQLKEHLEMQELL 262
Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSN 210
+ ++ + + + +
Sbjct: 263 RNILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQED 307
>gi|163842954|ref|YP_001627358.1| chaperone surA precursor [Brucella suis ATCC 23445]
gi|163673677|gb|ABY37788.1| Chaperone surA precursor [Brucella suis ATCC 23445]
Length = 318
Score = 41.4 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 48/199 (24%), Gaps = 17/199 (8%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ L + ++ F+ S V V + S +
Sbjct: 6 PLIASMLGAAVCLTALGTVAAPAFAAGESEVKVIVSGNAITNSDIKHRM----------- 54
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
+ +S L++ + L ++ G+ V A NK
Sbjct: 55 --AFLKLQRKSGNLNQLARNELTEEMLKRIEMKSRGINISDKEVDDAYAG----FASRNK 108
Query: 132 FSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRS 191
+ + + G+ + + + + +V + + +
Sbjct: 109 MTLAQLNQVMNQSGVTPEHFKKYIMVQMGWGRLVSARFRATGMVSEQEAVQRMLKNGGKK 168
Query: 192 VDYIVLNNRHVPAIADPSN 210
+ + V + S
Sbjct: 169 PVATEYHLQQVIFVLPASK 187
>gi|15614832|ref|NP_243135.1| hypothetical protein BH2269 [Bacillus halodurans C-125]
gi|10174889|dbj|BAB05988.1| BH2269 [Bacillus halodurans C-125]
Length = 245
Score = 41.4 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 8/65 (12%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG--LDKKILDNLVSGAT 98
V +V + + +++ +Q++ + + G + E + + ++++ ++ L++
Sbjct: 55 DPVATVNGESIDKETYVMVLEQQMMTM-AQYGISLEGEEGKQMISLIEEQTIEQLINEQL 113
Query: 99 LDQFI 103
L Q
Sbjct: 114 LQQAA 118
>gi|104781012|ref|YP_607510.1| trigger factor [Pseudomonas entomophila L48]
gi|122403882|sp|Q1ICA9|TIG_PSEE4 RecName: Full=Trigger factor; Short=TF
gi|95109999|emb|CAK14704.1| trigger factor [Pseudomonas entomophila L48]
Length = 437
Score = 41.4 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + E+ + +++ +V G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPEQLPAELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D V I + + + + + + +
Sbjct: 358 ELKPDEAEVRKVIEEMASAYQEPEQVVAWYYKNDQQLNEVRSVVLEEQ 405
>gi|311898042|dbj|BAJ30450.1| putative lipoprotein [Kitasatospora setae KM-6054]
Length = 207
Score = 41.4 bits (94), Expect = 0.50, Method: Composition-based stats.
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 5/79 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
VG ++ + + + GL + + +L+ G +
Sbjct: 33 QGAAAVVGTDRISIAQVEARVAAVRDGAAASG-----AATEEQPGLARHAVSDLILGKLI 87
Query: 100 DQFIEDIGLEADHGRVWGE 118
Q + D L V
Sbjct: 88 AQALADRQLGVSQAEVDRA 106
>gi|254457621|ref|ZP_05071049.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Campylobacterales
bacterium GD 1]
gi|207086413|gb|EDZ63697.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Campylobacterales
bacterium GD 1]
Length = 275
Score = 41.4 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 7/134 (5%), Positives = 41/134 (30%), Gaps = 13/134 (9%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
++T+++V ++ + ++ + K++L+ L++
Sbjct: 19 SATTLITVNGTQITQQDVDTALMNATQGRFNQVPAE------KQAEFRKQVLEQLIAKEL 72
Query: 99 LDQFIEDIGLEADHG------RVWGEIARSPLFHG-KDNKFSHDVFVSRLAREGINEKEY 151
+ + G+ +V + + + + + + ++ +
Sbjct: 73 VFGDAQKTGVLNSKDFKDEFVQVQERVKKELAIQVWQKQQLDKVEVSDKELKNYYDKNKD 132
Query: 152 IDHYTKMLSRTDVV 165
+ + + ++
Sbjct: 133 EFNEKETVHARHIL 146
>gi|149201836|ref|ZP_01878810.1| PPIC-type PPIASE domain [Roseovarius sp. TM1035]
gi|149144884|gb|EDM32913.1| PPIC-type PPIASE domain [Roseovarius sp. TM1035]
Length = 414
Score = 41.4 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 16/152 (10%), Positives = 41/152 (26%), Gaps = 18/152 (11%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
L + L+W LS + S + V Q + +
Sbjct: 8 LIAALTLAVTGLLVWPLSGGMAQAQNLFSPQIYVNDQAITGYELQQ-----RARLLTLFR 62
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ +R + L+ GL + V +
Sbjct: 63 APGDPQRLAR--------EQLIEERIKIDAARASGLVLEEDLVRDGMEE----FAGRANM 110
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDV 164
+ D ++ L G++++ + + ++ ++
Sbjct: 111 TADQLIAALGDSGVSQESFREFVRAGITWREL 142
>gi|260220319|emb|CBA27737.1| hypothetical protein Csp_A03780 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 347
Score = 41.4 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 31 SDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKIL 90
D + VG +++ +S+ + E +++G K++L
Sbjct: 27 GDKDGKKVATQVAAKVGSEEISVHQINQV-------LSRTNTNGASPEAVQAMG--KEVL 77
Query: 91 DNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ L+ + L V
Sbjct: 78 EKLIDQQLAVDQATENKLHRSPEVVAQI 105
>gi|317475721|ref|ZP_07934980.1| ppic-type ppiase domain-containing protein [Bacteroides eggerthii
1_2_48FAA]
gi|316908104|gb|EFV29799.1| ppic-type ppiase domain-containing protein [Bacteroides eggerthii
1_2_48FAA]
Length = 455
Score = 41.4 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 31/305 (10%), Positives = 86/305 (28%), Gaps = 31/305 (10%)
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
+ + F + P+ ++ I +++++ R+ +
Sbjct: 151 EIKITPAEVRRYFKDLPQDSIPYIPTQVEVQIITQQPKVPLEEIENVKKRLRDFTDRITK 210
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
+++ + ++ +I ++F+G+ + A + + Q +K
Sbjct: 211 GETSFSTLARMYSEDRASAIRGGEIEFSGRGMLDPAYANVAFNLQ----------DPNKV 260
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ + + +Q+ E R + + K S+ + + +
Sbjct: 261 SKIVESEYGFHIIQLIEKRGDRIKT----RHILLKPHIPEAALTAGMSRLDSIADDIRNG 316
Query: 514 GKNFRDIGKNLGASLLTTNQI--------NRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+F + L T N N E + + V V +
Sbjct: 317 KFSFEEAASVLSQDKDTRNNHGLLPNPNNNTSKFEMQELPPEIAKVVDKMKVGEISEAFT 376
Query: 566 -----ENGLSYVVFKVTNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
V+ K+ + K + + + +LD I + V
Sbjct: 377 MIPQKTGKEECVIVKLKSRTNGHKATVADDYQNLKEIVLEKRRDQMLDKWIREKQKHTYV 436
Query: 617 TVHDN 621
+++N
Sbjct: 437 RINEN 441
>gi|154246774|ref|YP_001417732.1| putative peptidyl-prolyl cis-trans isomerase SurA [Xanthobacter
autotrophicus Py2]
gi|154160859|gb|ABS68075.1| putative peptidyl-prolyl cis-trans isomerase SurA [Xanthobacter
autotrophicus Py2]
Length = 303
Score = 41.4 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 18/162 (11%), Positives = 45/162 (27%), Gaps = 17/162 (10%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+V V + + ++ Q I S + + L++L+
Sbjct: 26 AQQIIVMVNGDPITTFDV-----SQRQLMHQMIERKSVSAQ--------QALEDLIDERI 72
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q + +E + V A G+ + ++G+N++ +
Sbjct: 73 KIQQAIRLKMEVEQKDVDRLYASVAERSGRT----PEQLTEGFKQQGLNDRTFKQKLFAD 128
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
V G + + + A + E + +
Sbjct: 129 YVWGQYVRARSGTVNVRDADVVAALQKRGETQMIATEYTLMP 170
>gi|241203946|ref|YP_002975042.1| peptidyl-prolyl cis-trans isomerase protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240857836|gb|ACS55503.1| putative peptidyl-prolyl cis-trans isomerase protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 314
Score = 41.4 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 19/164 (11%), Positives = 38/164 (23%), Gaps = 18/164 (10%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + A++ + L+ A Q +
Sbjct: 35 AVVNGTAITSGDVAKR--------QAFLRLQHTKADAKAAE------EQLIDEALKRQEV 80
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + V AR NK S + L R G+ + +S
Sbjct: 81 TRVHMSVSQQDVDASFAR----FSSGNKLSPEQMSQILDRAGVGVDHFKGFIAVQMSWPR 136
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
VV G + ++ + + V +
Sbjct: 137 VVNARYGSTSRLSNYDLVSRMMQNNKQKPVTTEYMLQQVIFVIP 180
>gi|296128759|ref|YP_003636009.1| hypothetical protein Cfla_0901 [Cellulomonas flavigena DSM 20109]
gi|296020574|gb|ADG73810.1| conserved hypothetical protein [Cellulomonas flavigena DSM 20109]
Length = 184
Score = 41.4 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 9/103 (8%), Positives = 27/103 (26%), Gaps = 15/103 (14%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ ++ G T V + + + +++Q E
Sbjct: 1 MVAAAVVAG-GLLAGCAGQPGTAAVVDGRTITTAELATTYEQL--------------EPI 45
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSP 123
+ + +L L++ Q + G+ + +
Sbjct: 46 FNGAGAQDVLGVLITEPFAAQVAAEKGVGVNDDEALELLRSVA 88
>gi|293690|gb|AAA39407.1| laminin B1 [Mus musculus]
Length = 1834
Score = 41.4 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 28/323 (8%), Positives = 91/323 (28%), Gaps = 29/323 (8%)
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ ++ + V + + + K A + ++ K++E
Sbjct: 1488 AWQKAMDFDRDVLSALAEVEQLSKMVSEAKVRADEAKQNAQDVLLKTNATKEKVDKSNED 1547
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
++ K++ FL ++ + + I ++ ++ + + + +
Sbjct: 1548 LRNLIKQIRNFLT-----EDSADLDSIEAVANEVLKSGNASTPQQLQNLTEDIRERVETL 1602
Query: 444 FGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+ L + + + +S + V +++ K AE+
Sbjct: 1603 SQVEVILQQSAADIARAELLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIK 1662
Query: 502 KANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+A++ + E + + + + + ++ R +N
Sbjct: 1663 QADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQNSGEAEYIEK 1722
Query: 551 QVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS- 605
V+S +G V + K + + L L +
Sbjct: 1723 VVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQNEAKTLLAQAN 1782
Query: 606 ----VIAYLKSQYSVTVHDNLIQ 624
++ L+ +Y + ++
Sbjct: 1783 SKLQLLEDLERKY--EDNQKYLE 1803
>gi|126367|sp|P02469|LAMB1_MOUSE RecName: Full=Laminin subunit beta-1; AltName: Full=Laminin B1 chain;
AltName: Full=Laminin-1 subunit beta; AltName:
Full=Laminin-10 subunit beta; AltName: Full=Laminin-12
subunit beta; AltName: Full=Laminin-2 subunit beta;
AltName: Full=Laminin-6 subunit beta; AltName:
Full=Laminin-8 subunit beta; Flags: Precursor
Length = 1786
Score = 41.4 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 28/323 (8%), Positives = 91/323 (28%), Gaps = 29/323 (8%)
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ ++ + V + + + K A + ++ K++E
Sbjct: 1440 AWQKAMDFDRDVLSALAEVEQLSKMVSEAKVRADEAKQNAQDVLLKTNATKEKVDKSNED 1499
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
++ K++ FL ++ + + I ++ ++ + + + +
Sbjct: 1500 LRNLIKQIRNFLT-----EDSADLDSIEAVANEVLKSGNASTPQQLQNLTEDIRERVETL 1554
Query: 444 FGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+ L + + + +S + V +++ K AE+
Sbjct: 1555 SQVEVILQQSAADIARAELLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIK 1614
Query: 502 KANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+A++ + E + + + + + ++ R +N
Sbjct: 1615 QADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQNSGEAEYIEK 1674
Query: 551 QVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS- 605
V+S +G V + K + + L L +
Sbjct: 1675 VVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQNEAKTLLAQAN 1734
Query: 606 ----VIAYLKSQYSVTVHDNLIQ 624
++ L+ +Y + ++
Sbjct: 1735 SKLQLLEDLERKY--EDNQKYLE 1755
>gi|116492445|ref|YP_804180.1| peptidylprolyl isomerase [Pediococcus pentosaceus ATCC 25745]
gi|122266091|sp|Q03GD4|PRSA_PEDPA RecName: Full=Foldase protein prsA; Flags: Precursor
gi|116102595|gb|ABJ67738.1| Parvulin-like peptidyl-prolyl isomerase [Pediococcus pentosaceus
ATCC 25745]
Length = 295
Score = 41.4 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 29/117 (24%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K+ + + + G+ TV + K+ + +S K
Sbjct: 3 KVLIGFASIAMAFT------LAACGNKTVATTSGGKITQDEYYSSLKNTTSG-------- 48
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNK 131
K++L ++ L+ + G + V + +G K
Sbjct: 49 ------------KQVLQEMIVNKVLE---KQYGDKVSKKTVTKQYNSYKDQYGSSFK 90
>gi|218961587|ref|YP_001741362.1| putative Parvulin-like peptidyl-prolyl isomerase [Candidatus
Cloacamonas acidaminovorans]
gi|167730244|emb|CAO81156.1| putative Parvulin-like peptidyl-prolyl isomerase [Candidatus
Cloacamonas acidaminovorans]
Length = 281
Score = 41.0 bits (93), Expect = 0.54, Method: Composition-based stats.
Identities = 16/215 (7%), Positives = 42/215 (19%), Gaps = 15/215 (6%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V ++ + A + L L+ L
Sbjct: 2 QIIAKVFEFEISEQELERECAKV--------------SLAEREKCLEGALKRLIDRCLLL 47
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
+ G++ I K +E + K ++
Sbjct: 48 YKAMESGIKISDTEYENAIWELLDEEDP-LKLWSTSLEQLTPQEMEKLLKQRLMINKYIN 106
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
+ + + +Q + F + +L + + +
Sbjct: 107 SIFPQNIPITNAKIKEFYDEQKEFFLKPEQVRCSHILIRNDNEEAKAKAEQIRREIHNAD 166
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
Y +Y E++
Sbjct: 167 DFTYFCQKYSDCPSNNVCGDLGWFPRGKMIPEIEE 201
>gi|294508706|ref|YP_003572765.1| Foldase protein prsA [Precursor] [Salinibacter ruber M8]
gi|294345035|emb|CBH25813.1| Foldase protein prsA [Precursor] [Salinibacter ruber M8]
Length = 342
Score = 41.0 bits (93), Expect = 0.56, Method: Composition-based stats.
Identities = 28/273 (10%), Positives = 78/273 (28%), Gaps = 17/273 (6%)
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
+ + +A + ED + + + + R + + +L +
Sbjct: 66 QRYQQQVRMSMKRQAPSQQSEDQMQETHRQLIRGFARQHALRGEAKAQNLDVDPTQVNAR 125
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT- 484
K +EQ ++ + + ++ +Q + + + ++V
Sbjct: 126 LEKLKQRYESEEQFQKQLARNNMTVDSVRSLLADQFRQQQLQRQMAENYEEPSSDDVTAY 185
Query: 485 -----DVKKDWKTVKTAEEV--------SSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
++ +K E A LV E +F ++ +
Sbjct: 186 SEKNRRIRAQHILIKAGENAPESEVDSARKAAAALVDSAKMEDVDFAELARRHSQGPSAQ 245
Query: 532 NQINRMDNENKFFGYDGISQVFSG-PVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
+ ++ V P+ + V ++TN G + K
Sbjct: 246 KGGDLGFFTRDRMVDKFAEAAYALSDSGDVAPEPVHTRFGFHVIRLTN--AGEPMDTTKA 303
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+T+ + ++ I L +V + +++
Sbjct: 304 RKQMTKERRQQAVEDQINALLEDATVRTNPDIV 336
>gi|210134866|ref|YP_002301305.1| hypothetical protein HPP12_0672 [Helicobacter pylori P12]
gi|210132834|gb|ACJ07825.1| hypothetical protein HPP12_0672 [Helicobacter pylori P12]
Length = 414
Score = 41.0 bits (93), Expect = 0.56, Method: Composition-based stats.
Identities = 28/261 (10%), Positives = 69/261 (26%), Gaps = 24/261 (9%)
Query: 46 VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
V + E+ RS + D L++ +Q IE
Sbjct: 166 VNGSPITLYQIQE-------------------EQERSKVSKAQARDRLIAERIKNQEIER 206
Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
+ + D ++ E+A G D F L EG + K Y D + L +++
Sbjct: 207 LKIHVDDDKLDQEMAMMAQQQG----MDLDHFKQMLMAEG-HYKLYRDQLKEHLEMQELL 261
Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
+ ++ + + + + +
Sbjct: 262 RNILLTNVDTSSETKMREYYNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLEIPGV 321
Query: 226 APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADE 285
+ ++I + + I ++ + I+ + + +A +
Sbjct: 322 SKANEKIEMKTLNPQIAQVFISHEQGSFTPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQ 381
Query: 286 AFQSLKKGKKFIQLAEEQGKS 306
+ ++ EE +
Sbjct: 382 FIAQKLVEESKDKILEEHFEK 402
>gi|116329122|ref|YP_798842.1| hypothetical protein LBL_2545 [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116330269|ref|YP_799987.1| hypothetical protein LBJ_0534 [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116121866|gb|ABJ79909.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116123958|gb|ABJ75229.1| Conserved hypothetical protein [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 359
Score = 41.0 bits (93), Expect = 0.56, Method: Composition-based stats.
Identities = 21/190 (11%), Positives = 58/190 (30%), Gaps = 9/190 (4%)
Query: 24 PFLIWGLSDALFSVSG-SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
F+ L + + + + + +VG + ++ ++ +
Sbjct: 31 TFVFLFLQNPIQTAESLNRVIATVGTISISELDLDDASEKYTKLQKHLKHEDF------R 84
Query: 83 VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLA 142
L +I+D L+ A +D E+ ++ + RV EI + G N+ +
Sbjct: 85 KSLRTRIIDFLIDRAIVDVVAEEESIQVNEQRVDAEIEKRMEVMGITNR--KQFEKAMET 142
Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHV 202
G+ + ++ + + ++ + + PS + + +
Sbjct: 143 SSGMPFELWVTELPYQIKKGQLLQLKIAVPPPSEQEIKSWYNQNRDKVGFEIRYRIISIA 202
Query: 203 PAIADPSNAV 212
P
Sbjct: 203 PENDSIQEEN 212
>gi|330996061|ref|ZP_08319955.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT
11841]
gi|329574058|gb|EGG55636.1| PPIC-type PPIASE domain protein [Paraprevotella xylaniphila YIT
11841]
Length = 479
Score = 41.0 bits (93), Expect = 0.56, Method: Composition-based stats.
Identities = 47/356 (13%), Positives = 93/356 (26%), Gaps = 42/356 (11%)
Query: 280 QKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS-----LGSFSKEYIPDVSLADSIFSLAK 334
++ D + +L++G F LA++ + G F+K + +
Sbjct: 154 KERIDSIYTALQQGADFATLAKQCSADKGSAARGGDLGGWFAKGQTLKE--FEDVAFSLN 211
Query: 335 KGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITK---ASEKVKEDYKRL 391
KG+ + GY I + + K + + + R K AS + K
Sbjct: 212 KGEMSKPFLSPMGYHIVWMKDRKQLEPYEELKPQLQRFLESRGLKERVASIAIDSLVKSS 271
Query: 392 EEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLS 451
L +++ +R L Y + LL +
Sbjct: 272 SGQLTEEDVIEQKARELCAKDESLK-------------YLVQEYHDGLLLYEISTREVWD 318
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
K + +Y + R V K + + S ++
Sbjct: 319 KAAKDTVGLEAYFKAHRSKYKWDEPRYRGVVYHCKDKGLVKD-VRKLLKSVDEAQWIDTL 377
Query: 512 KEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS-QVFSGPVEMVKCFPIENGLS 570
+ N + QI N K + VF E +
Sbjct: 378 RASFNQDSV-----------KQIRVEKNLFKKGDNAFVDHLVFKEKKEPKAS------QA 420
Query: 571 YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
Y V K+ +E + + L+ Y V ++ ++
Sbjct: 421 YPYTAVYGKKLKKPKEWTDVRGEVVSDYQAACEAEFVRRLRETYKVEIYKEVLNTV 476
Score = 40.2 bits (91), Expect = 0.98, Method: Composition-based stats.
Identities = 59/519 (11%), Positives = 141/519 (27%), Gaps = 54/519 (10%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M++++RK + + G+ L++ V+ + + V S F ++
Sbjct: 1 MMKMMRK----------FALWCCSLCLTGI---LYAEGNDPVVMKINGKDVSRSEFEYNF 47
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ G V +DKK +D V + L+ +
Sbjct: 48 N-------KNNGENV---------VDKKTVDEYVD------LFVNYKLKV-EAALDARYD 84
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
F + + I + R GM +
Sbjct: 85 TLSSFKKE---------FRTYRDQQIRPYFVSLSAEEKELRRYYDGMKASIGPDGLVHPA 135
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
+ + + + +I + + R +
Sbjct: 136 HIMILVAQKATPEEQAKAKERIDSIYTALQQGADFATLAKQCSADKGSAARGGDLGGWFA 195
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
+ + E + + + + SP + + Q E E + + +
Sbjct: 196 KGQTLKEFEDVAFSLNKGEMSKPFLSPMGYHIVWMKDRKQLEPYEELKPQLQRFLESRGL 255
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLAD--SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKP 358
+E+ S++ SL S + + + + + AK ++ ++ + + +
Sbjct: 256 KERVASIAIDSLVKSSSGQLTEEDVIEQKARELCAKDESLKYLVQEYHDGLLLYEISTRE 315
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
+ + ++ A ++ K E R + + + R+ + +
Sbjct: 316 VWDKAAKDTVGLEAYFKAH-RSKYKWDEPRYRGVVYHCKDKGLVKDVRKLLKSVDEAQWI 374
Query: 419 DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDP----LSKDHTVALPDGSYMWVQIKESIPA 474
D V I ++ L + K A Y V
Sbjct: 375 DTLRASFNQDSVKQIRVEKNLFKKGDNAFVDHLVFKEKKEPKASQAYPYTAVY--GKKLK 432
Query: 475 RDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ ++ +V +V D++ AE V +E KE
Sbjct: 433 KPKEWTDVRGEVVSDYQAACEAEFVRRLRETYKVEIYKE 471
>gi|317177476|dbj|BAJ55265.1| hypothetical protein HPF16_0668 [Helicobacter pylori F16]
Length = 419
Score = 41.0 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 180 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 235
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 236 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 294
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 295 IPTEIETVRYTSTNQEDLERAMSNPNLEVPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 354
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 355 TPIMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 407
>gi|294507825|ref|YP_003571883.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
gi|294344153|emb|CBH24931.1| conserved hypothetical protein, secreted [Salinibacter ruber M8]
Length = 289
Score = 41.0 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
GL+ S V VG + + +G V +S A K
Sbjct: 21 AGLAGCQTEAPPDSYVARVGTHYLTGADLDRML--------AGMGPVRDSTEA-----RK 67
Query: 88 KILDNLVSGATLDQFIEDIGLEADHG 113
+ +D V+ L + E + L ++
Sbjct: 68 QAIDQWVTRTLLYREAERLNLSSNDE 93
>gi|163784187|ref|ZP_02179121.1| hypothetical protein HG1285_05540 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880547|gb|EDP74117.1| hypothetical protein HG1285_05540 [Hydrogenivirga sp. 128-5-R1-1]
Length = 288
Score = 41.0 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 24/182 (13%), Positives = 50/182 (27%), Gaps = 21/182 (11%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V+ V + V S + ++ ++ DK+ L+ L
Sbjct: 28 DKIVIIVNDRPVLKSEVELA------------------KKWFNISSDKEAAQKLIDHILL 69
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q G++ + I R + S + F L ++GI E+ D + +
Sbjct: 70 YQEARKKGIKVMPQEIKAAIERIS---KANKVSSIEEFKKLLQKQGIAYNEFYDLIKREI 126
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK 219
+ V + N + + + +N + E
Sbjct: 127 AINKYVQFVIKPKILENSKEAVEETYRKVRIIYLDKKDPDFKNKYEIIKNNLTKNTFEEL 186
Query: 220 YK 221
K
Sbjct: 187 AK 188
>gi|217032492|ref|ZP_03437984.1| hypothetical protein HPB128_156g22 [Helicobacter pylori B128]
gi|298736357|ref|YP_003728883.1| hypothetical protein HPB8_862 [Helicobacter pylori B8]
gi|216945838|gb|EEC24459.1| hypothetical protein HPB128_156g22 [Helicobacter pylori B128]
gi|298355547|emb|CBI66419.1| conserved hypothetical protein [Helicobacter pylori B8]
Length = 408
Score = 41.0 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 169 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 224
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 225 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 283
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 284 IPTEIETVRYTSTNQEDLERAMADPNLEIPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 343
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 344 TPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 396
>gi|117923758|ref|YP_864375.1| DSBA oxidoreductase [Magnetococcus sp. MC-1]
gi|117607514|gb|ABK42969.1| DSBA oxidoreductase [Magnetococcus sp. MC-1]
Length = 335
Score = 41.0 bits (93), Expect = 0.57, Method: Composition-based stats.
Identities = 31/271 (11%), Positives = 73/271 (26%), Gaps = 38/271 (14%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S V +G KV S EL + + K LD+++ L
Sbjct: 26 SPVVGQMGTWKVTLEELDKSIAGELFELEN-----------KIYETRAKALDSMMVEHLL 74
Query: 100 DQFIEDIGLE---------------ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
D + G+ V I ++ + +
Sbjct: 75 DTEAKKQGITIDALEKREVTDKVTPVSDAEVAQFIEQNS-----------ERLPNAGEGL 123
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
K Y+ R ++ + + + L + + Y N ++ +
Sbjct: 124 EERIKSYLTEQRAAKFRRALLAQLMSQVEVTTNLPEPEEPRYTFNSTMTPSLGAADAPVT 183
Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEY-EKNKEK 263
I + S+ + H +++ +A +++++
Sbjct: 184 IVEFSDFECPYCRRVQPALKQLKTKYGDKIQFVFRHYPLSFHKLAPLASKAAMCGEDQQQ 243
Query: 264 YFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
+++ E+ V ++ D+ LK
Sbjct: 244 FWAFHDALFEEGVDLSRAGLDKVAADLKLDM 274
>gi|226941162|ref|YP_002796236.1| peptidyl-prolyl cis-trans isomerase [Laribacter hongkongensis
HLHK9]
gi|226716089|gb|ACO75227.1| Probable peptidyl-prolyl cis-trans isomerase [Laribacter
hongkongensis HLHK9]
Length = 243
Score = 41.0 bits (93), Expect = 0.58, Method: Composition-based stats.
Identities = 10/95 (10%), Positives = 23/95 (24%), Gaps = 22/95 (23%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
++V ++ ++ + + + LV L Q
Sbjct: 3 ITVNGVEIT--------EEMIKAQQDNFADASDP--------RDATIQQLVLHTLLLQKA 46
Query: 104 EDIGLEADHGR------VWGEIARSPLFHGKDNKF 132
+ GL+ + I P +F
Sbjct: 47 REAGLDTSDEAAAINALLEQSIRYEPATEATCREF 81
>gi|254511943|ref|ZP_05124010.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium KLH11]
gi|221535654|gb|EEE38642.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium KLH11]
Length = 417
Score = 41.0 bits (93), Expect = 0.58, Method: Composition-based stats.
Identities = 22/195 (11%), Positives = 52/195 (26%), Gaps = 18/195 (9%)
Query: 19 VVLFVPFLIWGLSDALFSVSGS-STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
++ + + ++ S + V + V + + +G +S
Sbjct: 19 ILPVMALALTAMATPQAQGQSLFSPAIRVNQDIVTWYELEQ-----RQQFLELLGAPNSS 73
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
E ++ + L+ Q + + G+EA V I S + F
Sbjct: 74 EI--------EVREALIDDRLRKQVMREAGIEAAPEAVETGIDDIAA----RGNLSSEEF 121
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ L G++ + D L+ D + + + ++
Sbjct: 122 LQLLNDAGVSRETVRDFVADQLTWRDYISARFLSQARPSEDEINRALGQGGGGGLQVLLS 181
Query: 198 NNRHVPAIADPSNAV 212
S A
Sbjct: 182 EIIIPVTPQTLSQAE 196
Score = 37.9 bits (85), Expect = 4.8, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 36/119 (30%), Gaps = 4/119 (3%)
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTT-NQINRMDNENKFFGYDGISQVFSGPVEMV 560
++ + E ++ + G + + R+ D ++
Sbjct: 296 RSADTLAEAARLKEEIDTCDDLYGLAKEQPPEVLERISASPSEIPRDVALELAKLDPNEA 355
Query: 561 KCFPIENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
N +VF + +G + + LTQ + DS++ L+S +
Sbjct: 356 STALTRNNGQTLVFLMLCSRTRDLGENTTRVDVANALTQQRLQAFADSLLEQLRSDAVI 414
>gi|209543390|ref|YP_002275619.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531067|gb|ACI51004.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 308
Score = 41.0 bits (93), Expect = 0.58, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 34/129 (26%), Gaps = 11/129 (8%)
Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
V SV + + + + + Q + + +L+ L+ +
Sbjct: 50 VASVNGEDIHLADVRQAAANMPAQLRQ-----LPPNM-----IFPMLLNQLIDQKAIQAA 99
Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
GL+ V ++ + + ++ S V + K +
Sbjct: 100 ATHAGLDKQPD-VQQQMHAAAMNALQNAYLSQQVTPTLTDAAVQAYYTQHYANKKPEAEI 158
Query: 163 DVVGMFVGG 171
+ V
Sbjct: 159 HARHILVAT 167
>gi|329120541|ref|ZP_08249205.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria
bacilliformis ATCC BAA-1200]
gi|327461280|gb|EGF07612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Neisseria
bacilliformis ATCC BAA-1200]
Length = 290
Score = 41.0 bits (93), Expect = 0.58, Method: Composition-based stats.
Identities = 28/234 (11%), Positives = 58/234 (24%), Gaps = 21/234 (8%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
+ L + T+V+V K+ S K N + S + ++
Sbjct: 11 VLAVLSGSLAAQTLVTVNGSKIDSSEVDRYVKALRAQ---------NPQVPDSPEIRSEL 61
Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK 149
L ++V+ + Q + L+ + A + K
Sbjct: 62 LGDIVTRTIVVQEARRLKLDQGKEYKAAIENARKAAQKEG------------ADKKPGFK 109
Query: 150 EYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
+ + Y L V V S+ + V + D +
Sbjct: 110 QQWEDYQNELLNQAFVAHIVRTQPVSDAEARKNYEEMQNFYKGSSEVQIGEILTQKKDDA 169
Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
+ A +Y + ++ + + E A N K
Sbjct: 170 EKAIKDLKANKPFVETARKYSADPQVKQTGGINKEYDPLKDLEAAAPPVYNAVK 223
>gi|108563069|ref|YP_627385.1| hypothetical protein HPAG1_0644 [Helicobacter pylori HPAG1]
gi|107836842|gb|ABF84711.1| hypothetical protein HPAG1_0644 [Helicobacter pylori HPAG1]
Length = 414
Score = 41.0 bits (93), Expect = 0.58, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 55/179 (30%), Gaps = 7/179 (3%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 175 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 230
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + + + + + + + + R Y+
Sbjct: 231 LDHFKQMLMAEGHYKLYRDQLKEHLEMQELLRNILLTN---VDTSSETKMREYYNKHKEQ 287
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ + S L + + ++ + ++ IS+++
Sbjct: 288 FSIPTEIETVRYTSTSQEDLERAMADPNLEIPGVSKANEKIEMKTLNPQIAQVFISHEQ 346
>gi|332829602|gb|EGK02248.1| hypothetical protein HMPREF9455_01518 [Dysgonomonas gadei ATCC
BAA-286]
Length = 461
Score = 41.0 bits (93), Expect = 0.59, Method: Composition-based stats.
Identities = 21/219 (9%), Positives = 54/219 (24%), Gaps = 18/219 (8%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K L+ + + GL + VG + + S + + L + G
Sbjct: 6 GKFILLAILLS---SGLLCKAQDNIIDQIIWVVGDEAILKSDVEKARQMMLSRGERIEGD 62
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
I + L + ++ V + R + S
Sbjct: 63 PY-----------CLIPEQLAVQKLFLDQAKIDSIDVPTAEVSRGVTRQENMVIANLG-S 110
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ L + + + + + +V + L ++ + +
Sbjct: 111 KEKVEEYLQASM---SQLREEWREEIRNGYLVSEVKKKLVGKKSSLTPSEVRRYYAQLPQ 167
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
+ + +N + E K R ++
Sbjct: 168 DSLPYIPTTVEVQIITNEPIVPLAEIDKVKERLRDFTNR 206
>gi|308061989|gb|ADO03877.1| hypothetical protein HPCU_03575 [Helicobacter pylori Cuz20]
Length = 403
Score = 41.0 bits (93), Expect = 0.59, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 164 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 219
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 220 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 278
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 279 IPTEIETVRYTSTNQEDLERAMADPNLEIPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 338
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 339 TPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 391
>gi|291277475|ref|YP_003517247.1| hypothetical protein HMU12700 [Helicobacter mustelae 12198]
gi|290964669|emb|CBG40524.1| putative periplasmic protein [Helicobacter mustelae 12198]
Length = 300
Score = 41.0 bits (93), Expect = 0.59, Method: Composition-based stats.
Identities = 24/267 (8%), Positives = 73/267 (27%), Gaps = 22/267 (8%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
++V + + K++ ++K +D LV+ +Q
Sbjct: 46 IAITVNGDPITLYQIKQTAKEQK-------------------LTEEKAIDFLVAQKIKEQ 86
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
I+ + + D ++ EI +G D K + + ++E+E+ H + +
Sbjct: 87 EIKRLKINIDEEKIDNEIQNMAYRNGMDTK---TFLSAIKKEQHMSEREFKKHLKEQMET 143
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+++ + S + + + +
Sbjct: 144 QELMRSVLMSNGNSAGEEEMRDYYNKHRGEFNMPKEVLVVRYSAKSSELLEEAIKHPDTA 203
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+++S + +E + + I+ +
Sbjct: 204 MRGVERVQEKMSLASLAPQIGQVFATTKINEFTTILNAGNNTFVTFLIKEKIGEEQITFQ 263
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLS 308
+A K+ ++ E+ + +
Sbjct: 264 QAKNFITQKLIEKRQDKILEDHFEKIK 290
>gi|307637349|gb|ADN79799.1| hypothetical protein hp908_0672 [Helicobacter pylori 908]
gi|325995941|gb|ADZ51346.1| hypothetical protein hp2018_0650 [Helicobacter pylori 2018]
gi|325997535|gb|ADZ49743.1| hypothetical protein hp2017_0649 [Helicobacter pylori 2017]
Length = 414
Score = 41.0 bits (93), Expect = 0.60, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 5/137 (3%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 175 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 230
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 231 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 289
Query: 194 YIVLNNRHVPAIADPSN 210
+ +
Sbjct: 290 IPTEIETVRYTSTNQED 306
>gi|212639198|ref|YP_002315718.1| putative GTPase [Anoxybacillus flavithermus WK1]
gi|212560678|gb|ACJ33733.1| Predicted GTPase [Anoxybacillus flavithermus WK1]
Length = 1210
Score = 41.0 bits (93), Expect = 0.60, Method: Composition-based stats.
Identities = 36/478 (7%), Positives = 112/478 (23%), Gaps = 24/478 (5%)
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL----DQFIEDIGLEAD-- 111
E + + + + + + R + +D ++ Q E+ +
Sbjct: 247 EHVHNEFDELKKLLQSLFDEKEERLHQNIRIAVDQMIDDHMQIVIAQQEEEERNIRQSLS 306
Query: 112 ----------HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ I + + L + E ++ L
Sbjct: 307 FDHEHELLAKLEEIERAIDHIHTTWTNAKQHIEQQLETTLHNAYVMPYETREYARAYLEA 366
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
++ KR + + + + ++
Sbjct: 367 CQPDFKVGFLFTKQKTEEERKKRLHAFYEDLHQKIESQLEWHIRDLLKQFYQQYDVHDHE 426
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+R + + V K+ + ++ D + + QLV +
Sbjct: 427 LLHRIQQLTVPFSEQWIVERKQNQPVVTGDYVLTYTNDIANEMKRLYRDVAIQLVEQIIE 486
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ + ++ +L E+ + + +E+ + D
Sbjct: 487 KGKVQQKLSMYQQQLNKLMGER-ACWEQLKQLAREREHTRQQLQKVVENANPLSDDAVHP 545
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ N + + + + I + +E++ E + + + +A M
Sbjct: 546 FVHETFTIRTIGKNKEEVPPENESKKEDVIPKTQIENETTEQMIEKLRTISQMIAPIKGM 605
Query: 402 DEISRREKIVSI-------DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
+++ ++ + L A I +
Sbjct: 606 KQLANEMEVKVQQLQRRTFTIALFGAFSAGKSSFANALIGEHVLPVSPHPTTATINKIVP 665
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
+ VQ+K + + + + EE ++ +
Sbjct: 666 PTDEFPHGTVVVQVKTEQQLLNDLQHSLRFFGMQVHSLQEAIEESKKAIRNEAVDAKE 723
>gi|311086454|gb|ADP66535.1| survival protein SurA precursor [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
Length = 399
Score = 41.0 bits (93), Expect = 0.60, Method: Composition-based stats.
Identities = 32/412 (7%), Positives = 105/412 (25%), Gaps = 16/412 (3%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+ + S + L + + + +S L +K+L+ L+ + + Q
Sbjct: 2 NDEIILNSD----VNEILVFLKKSKKKFIIP--LKSDFLKEKVLEKLIVDSLILQEANSK 55
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+ ++ I L L R N Y + K+ +
Sbjct: 56 NINITKEQIDTVIKNIALKKHISVN---HFKKQILLRNIKNPSYYDNFIKKIEILLKMKT 112
Query: 167 MFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRA 226
+ + + +Q F+ D ++ I PS + + +
Sbjct: 113 IQDYELHKRINISEQEVNTIFKKLIKDNEKFKKINLSYILLPSFKQDSDNAVRNRIKIAE 172
Query: 227 PEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
++ + + + + + + Q
Sbjct: 173 NIVYKLKKGYDFEKLLIECEKNKSTFIVKKMFWKPLLDIQNSFFKTLNIFKKGQILGPIV 232
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
K + ++ +++ + + ++ ++ + I+ +
Sbjct: 233 GDKGLYILKVNDIHHKKENIVTEFYMQHCLIKPSVILTNTEAKKKIFN-------IYENI 285
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
I + + + + K ++ + + + +
Sbjct: 286 KKGIYTFDDAVKNLSDDYYSSNKKGDLGWISKESLGFDLNKKFLILDKNEISEPVKSNWG 345
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVAL 458
+D VD K K + + ++ + + +D + + +
Sbjct: 346 WHIFKILDRRQVDAFYKLKKNQAFNIVLNQKIISEKNHWIEDLKNTAYIEII 397
>gi|224025969|ref|ZP_03644335.1| hypothetical protein BACCOPRO_02720 [Bacteroides coprophilus DSM
18228]
gi|224019205|gb|EEF77203.1| hypothetical protein BACCOPRO_02720 [Bacteroides coprophilus DSM
18228]
Length = 457
Score = 41.0 bits (93), Expect = 0.61, Method: Composition-based stats.
Identities = 38/360 (10%), Positives = 96/360 (26%), Gaps = 32/360 (8%)
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ E + + + + E+ + + + +E + + + +
Sbjct: 96 QEVETYTAWLIEQIGTKEKMEEYYNKTSTQIREMLRENMRNKQIVQEMQRKIVGDIKLTP 155
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
Y ++ P + + ++ + E + + T+
Sbjct: 156 AEVRN-YFSKLPADSIPYILPQVEVQIITLEPKVTEEEKERIKSELREFTDRINKGETTF 214
Query: 402 DEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG 461
++R G +G+ V + VF D G
Sbjct: 215 STLARMYSEDPGSARQGGEYGFMGRGQLVP------EFANVVFNLTDTKKISKVFETEFG 268
Query: 462 SYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
++ I++ + + + K +E +K + L + K NF D
Sbjct: 269 FHIAQLIEKRGDRVSYRHILLKPRI-----DQKEIDEALAKLDTLANDIRKGKVNFDDAA 323
Query: 522 KNLGASLLTTNQINRMDNE------------NKFFGYDGISQVFSGPVEMVKC----FPI 565
+ T N + N + D V + V
Sbjct: 324 TWVSQDKETRNNHGLLANPQTGTARFEMGQLSSLISQDVAKVVDGLQIGEVSQPFTMTTS 383
Query: 566 ENGLSYVVFKVTNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ + K+ N K ++ + S +T +++ L I + + V ++
Sbjct: 384 KGKEVCAIVKLKNRIDGHKATITEDYQRLKSIVTAKRSEEKLQKWIVEKQKKTYVRINPE 443
>gi|254779354|ref|YP_003057459.1| hypothetical protein HELPY_0712 [Helicobacter pylori B38]
gi|254001265|emb|CAX29242.1| Conserved hypothetical protein [Helicobacter pylori B38]
Length = 420
Score = 41.0 bits (93), Expect = 0.62, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 55/179 (30%), Gaps = 7/179 (3%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 181 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 236
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + + + + + + + + R Y+
Sbjct: 237 LDHFKQMLMAEGHYKLYRDQLKEHLEMQELLRNILLTN---VDTSSETKMREYYNKHKEQ 293
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ + S L + + ++ + ++ IS+++
Sbjct: 294 FSIPTEIETVRYTSTSQEDLERAMADPNLEIPGVSKANEKIEMKTLNPQIAQVFISHEQ 352
>gi|317181972|dbj|BAJ59756.1| hypothetical protein HPF57_0682 [Helicobacter pylori F57]
Length = 411
Score = 41.0 bits (93), Expect = 0.63, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 228 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 286
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 287 IPTEIETVRYTSTNQEDLERAMSNPNLEVPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 346
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 347 TPIMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 399
>gi|328544014|ref|YP_004304123.1| SurA N-terminal domain family protein [polymorphum gilvum
SL003B-26A1]
gi|326413758|gb|ADZ70821.1| SurA N-terminal domain family protein [Polymorphum gilvum
SL003B-26A1]
Length = 307
Score = 41.0 bits (93), Expect = 0.64, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 15/118 (12%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V V Q + + + + +K G + + LV +
Sbjct: 31 VVVNEQAITSYDIAQR-ARLITLTQRKSGETA----------RRMAQEELVDDVLKLKEA 79
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ IG+ G V A + K S + L + G++ ++
Sbjct: 80 QRIGISVSKGDVDDAFASI----AQRVKMSPANLAAALRQSGVDPDTLRARLRAEVAW 133
Score = 40.2 bits (91), Expect = 0.96, Method: Composition-based stats.
Identities = 21/282 (7%), Positives = 70/282 (24%), Gaps = 3/282 (1%)
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLA 396
+ + + + ++ + Q + A +M + + V + + ++
Sbjct: 26 QTSIKVVVNEQAITSYDIAQRARLITLTQRKSGETARRMAQEELVDDVLKLKEAQRIGIS 85
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
+ + + + + + A + + + V
Sbjct: 86 VSKGDVDDAFASIAQRVKMSPANLAAALRQSGVDPDTLRARLRAEVAWSRAVGQRFRAQV 145
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKN 516
+ D + K ++ +E L V K + + ++ + ++ KE +
Sbjct: 146 KVSDSDVIAALQKSEDKNKNLSIEFELRQVIF-VVPQKASSGLKAQRKREADQFRKEFTS 204
Query: 517 FRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM-VKCFPIENGLSYVVFK 575
+L + V GL +
Sbjct: 205 CETGAAQAR-TLNEVVVRAIGHRLETELPPALRDTIVKTEVGRLTPPEQTSRGLEMIAVC 263
Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L Q + + + L+ + ++
Sbjct: 264 GKREIQSDIAARTAIEDELRQKEGEQMSRRYLQELRRRATIE 305
>gi|308184447|ref|YP_003928580.1| hypothetical protein HPSJM_03355 [Helicobacter pylori SJM180]
gi|308060367|gb|ADO02263.1| hypothetical protein HPSJM_03355 [Helicobacter pylori SJM180]
Length = 400
Score = 41.0 bits (93), Expect = 0.64, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 5/137 (3%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 161 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 216
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 217 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 275
Query: 194 YIVLNNRHVPAIADPSN 210
+ +
Sbjct: 276 IPTEIETVRYTSTNQED 292
>gi|162146617|ref|YP_001601076.1| peptidylprolyl isomerase [Gluconacetobacter diazotrophicus PAl 5]
gi|161785192|emb|CAP54738.1| Peptidylprolyl isomerase [Gluconacetobacter diazotrophicus PAl 5]
Length = 308
Score = 41.0 bits (93), Expect = 0.64, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 34/129 (26%), Gaps = 11/129 (8%)
Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
V SV + + + + + Q + + +L+ L+ +
Sbjct: 50 VASVNGEDIHLNDVRQAAANMPAQLRQ-----LPPNM-----IFPMLLNQLIDQKAIQAA 99
Query: 103 IEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRT 162
GL+ V ++ + + ++ S V + K +
Sbjct: 100 ATHAGLDKQPD-VQQQMHAAAMNALQNAYLSQQVTPTLTDAAVQAYYTQHYANKKPEAEI 158
Query: 163 DVVGMFVGG 171
+ V
Sbjct: 159 HARHILVAT 167
>gi|304405851|ref|ZP_07387509.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
curdlanolyticus YK9]
gi|304345094|gb|EFM10930.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paenibacillus
curdlanolyticus YK9]
Length = 403
Score = 41.0 bits (93), Expect = 0.65, Method: Composition-based stats.
Identities = 27/266 (10%), Positives = 67/266 (25%), Gaps = 12/266 (4%)
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
+ + + + + E K+ + K + + + T +
Sbjct: 103 EFTKYTTFYSLFDQSFAMYLQIPEAKEQYLKEYVGYKTLYDRSSEDDKKSADTEVATFIK 162
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + + + VD AG K + G
Sbjct: 163 QYNEQLTSNAEMKKTVDAAGLTEKD-VSGFYKQIVTIRKYWERNVSDADIKAEYEKNKGG 221
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
Y V ++ + + + + EE A ++ + K G +
Sbjct: 222 YNLVSVRHILISTVDPSTG---------EEKRKDEEALKIAKEVKAKLDKGGDWKALANQ 272
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
N + + + + PV V P+++ Y V KV +
Sbjct: 273 YSDDEGSKGNGGLYENASPNSWVAEFKEAAITQPVGTVGE-PVKSQYGYHVMKVEKRESK 331
Query: 583 PVQEKDK-FISYLTQMMNKDLLDSVI 607
+E + + + + +
Sbjct: 332 KFEELSEDVKTQVKTGAINTKMGDFM 357
>gi|76789081|ref|YP_328167.1| hypothetical protein CTA_0384 [Chlamydia trachomatis A/HAR-13]
gi|237802780|ref|YP_002887974.1| hypothetical protein JALI_3531 [Chlamydia trachomatis B/Jali20/OT]
gi|237804702|ref|YP_002888856.1| hypothetical protein CTB_3531 [Chlamydia trachomatis B/TZ1A828/OT]
gi|76167611|gb|AAX50619.1| hypothetical protein CTA_0384 [Chlamydia trachomatis A/HAR-13]
gi|231273002|emb|CAX09914.1| putative exported protein [Chlamydia trachomatis B/TZ1A828/OT]
gi|231274014|emb|CAX10807.1| putative exported protein [Chlamydia trachomatis B/Jali20/OT]
Length = 353
Score = 41.0 bits (93), Expect = 0.65, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 11/116 (9%)
Query: 18 LVVLFVPFLIWGLSDALFSVS---GSSTVV-------SVG-RQKVPFSSFINSWKQELGM 66
L + + +G A S S S V V V I
Sbjct: 13 LGITIFSGIAFGYEGAFSSGSFEQNPSGVAIHNRVLFKVDEDTVVTTLDVIRKLNILFYS 72
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
++ V++ + +L+ +++ + + + D V EI
Sbjct: 73 TCPQLVDSVSARSQYYSAMWPVVLETVINEFLMAADAKAKKIFIDPTSVNQEIEAM 128
>gi|224417667|ref|ZP_03655673.1| hypothetical protein HcanM9_00172 [Helicobacter canadensis MIT
98-5491]
gi|253827018|ref|ZP_04869903.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313141212|ref|ZP_07803405.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|253510424|gb|EES89083.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
gi|313130243|gb|EFR47860.1| conserved hypothetical protein [Helicobacter canadensis MIT
98-5491]
Length = 282
Score = 41.0 bits (93), Expect = 0.65, Method: Composition-based stats.
Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 8/239 (3%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ ++E+ LA+ ++E E+I + + D + L
Sbjct: 46 QQRDKVEQNLAVDILINEKLHEEEIKKHKIVATELELNDEISAIARQNQTTPEQLESYIR 105
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ +++ + ++ K L+ V + + + E ++
Sbjct: 106 TNGGNWENYKEEIKKR---ILKRKLYQIISQESLKMVDENQLRSYYDTHKEEFSIPQSID 162
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+ +SKEG + K+ G + + +S F+
Sbjct: 163 VTKFFSKEGAALETLIKSGGKDIPKGIGQENEVLQTTALNPQIVS-AFTQGKIGSFTPIY 221
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFI----SYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
G +V F + + + + L+ L+S V++
Sbjct: 222 PIGEDFVTFLIKAKNNPTLAPFENVRDIVLQKIMSQKEDYLIYEYFEKLRSNAKVSIIR 280
Score = 38.7 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 18/198 (9%), Positives = 50/198 (25%), Gaps = 29/198 (14%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ ++ L + + G + V V Q+ + Q
Sbjct: 2 KKYLLTSLLSFVVISHAF-GAPSLVNG-----IAFFVNGNPVTLLDVYKV--QQRDKVEQ 53
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ +D L++ ++ I+ + A + EI+ +
Sbjct: 54 NL-----------------AVDILINEKLHEEEIKKHKIVATELELNDEISAI----ARQ 92
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
N+ + + S + G N + Y + K + + + + +
Sbjct: 93 NQTTPEQLESYIRTNGGNWENYKEEIKKRILKRKLYQIISQESLKMVDENQLRSYYDTHK 152
Query: 190 RSVDYIVLNNRHVPAIAD 207
+ +
Sbjct: 153 EEFSIPQSIDVTKFFSKE 170
>gi|208434581|ref|YP_002266247.1| hypothetical protein HPG27_621 [Helicobacter pylori G27]
gi|208432510|gb|ACI27381.1| hypothetical protein HPG27_621 [Helicobacter pylori G27]
Length = 415
Score = 41.0 bits (93), Expect = 0.65, Method: Composition-based stats.
Identities = 22/179 (12%), Positives = 55/179 (30%), Gaps = 7/179 (3%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 176 QIQEEQKKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 231
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + + + + + + + + R Y+
Sbjct: 232 LDHFKQMLMAEGHYKLYRDQLKEHLEMQELLRNILLTN---VDTSSETKMREYYNKHKEQ 288
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
+ + S L + + ++ + ++ IS+++
Sbjct: 289 FSIPTEIETVRYTSTSQEDLERAMADPNLEIPGVSKANEKIEMKTLNPQIAQVFISHEQ 347
>gi|28378171|ref|NP_785063.1| peptidylprolyl isomerase [Lactobacillus plantarum WCFS1]
gi|254556379|ref|YP_003062796.1| peptidylprolyl isomerase [Lactobacillus plantarum JDM1]
gi|300767131|ref|ZP_07077043.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308180351|ref|YP_003924479.1| peptidylprolyl isomerase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|46396873|sp|Q88X05|PRSA1_LACPL RecName: Full=Foldase protein prsA 1; Flags: Precursor
gi|28271006|emb|CAD63911.1| peptidylprolyl isomerase [Lactobacillus plantarum WCFS1]
gi|254045306|gb|ACT62099.1| peptidylprolyl isomerase [Lactobacillus plantarum JDM1]
gi|300494950|gb|EFK30106.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus plantarum subsp.
plantarum ATCC 14917]
gi|308045842|gb|ADN98385.1| peptidylprolyl isomerase [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 298
Score = 41.0 bits (93), Expect = 0.65, Method: Composition-based stats.
Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 40/212 (18%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ W+ I L + + F + G TV S K+ S + +S K
Sbjct: 2 KKWL--IALAGVLLTFTLAGCGS--------KTVASTSGGKITESQYYSSMKGTSSG--- 48
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
K++L ++ L+ +D G + +V + +G
Sbjct: 49 -----------------KQVLQQMILNKVLE---KDYGSKVSTKQVTKQYNTYKSQYGS- 87
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
F + L++ G+ K + + L + V V + ++
Sbjct: 88 ------SFSTVLSQNGLTTKTFKEQLRSNLLLKEAVKDKVKITDKALKKQWKSYEPKVTV 141
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ + A ++ + + K
Sbjct: 142 QHILVAKSATADKVLDALKKDSSQANFTKLAK 173
>gi|261838101|gb|ACX97867.1| hypothetical protein KHP_0662 [Helicobacter pylori 51]
Length = 411
Score = 41.0 bits (93), Expect = 0.66, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 228 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 286
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 287 IPTEIETVRYTSTNQEDLERAMADPNLEIPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 346
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 347 TPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 399
>gi|302671608|ref|YP_003831568.1| peptidyl-prolyl cis-trans isomerase PpiC-type [Butyrivibrio
proteoclasticus B316]
gi|302396081|gb|ADL34986.1| peptidyl-prolyl cis-trans isomerase PpiC-type [Butyrivibrio
proteoclasticus B316]
Length = 356
Score = 41.0 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 10/120 (8%), Positives = 29/120 (24%), Gaps = 9/120 (7%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDA-----LFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
+ + ++L V G D + + + +
Sbjct: 8 HIKRISMILIGMILVVSLTACGSLDGTRKVVFTTGFSDDEIFRIEDSVCSIQEIMAYLIN 67
Query: 63 ELGMISQKIGFVV----NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
G + + + L + IL + ++ ++G+ D +
Sbjct: 68 TQNGYEGTFGREIWETQTDDGTVAQQLKESILAKVAQIKAMNLLAGEMGIVLDDNELSMA 127
>gi|222148150|ref|YP_002549107.1| hypothetical protein Avi_1539 [Agrobacterium vitis S4]
gi|221735138|gb|ACM36101.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 315
Score = 41.0 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 38/151 (25%), Gaps = 17/151 (11%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ V V + + + + + G + KK L+
Sbjct: 35 DTGVAVVVNKTAITNTDLARRIAFLK--LRHETGD-----------VAKKARQELIDEQL 81
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
Q I +G+ V R NK S L + G+ + + +
Sbjct: 82 KRQEIARVGMSVSTMDVDQAFGRFAA----SNKLSTQQMGQILDKAGVGVEHFKAYIAVQ 137
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+S +V + + +
Sbjct: 138 MSWPRLVNARYASRSKMSNQDMVTRLLENKQ 168
>gi|219847928|ref|YP_002462361.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
aggregans DSM 9485]
gi|219542187|gb|ACL23925.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Chloroflexus
aggregans DSM 9485]
Length = 302
Score = 41.0 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQEL-GMISQKIGFVVNSERARS----VGLDKKILDN 92
+ S +G Q + N K+ + I+ + E+ L ++I +
Sbjct: 28 TDSPVAFRLGTQVYTVADVNNEIKRAIGDGIANALASGQTREQIEQIVVENDLRRQIFEQ 87
Query: 93 LVSGATLDQFIEDIGLEAD----HGRVWGEIARSPL 124
++ L + G+ D V+ I+
Sbjct: 88 MIQNELLLYYARQHGIGVDPVALDAVVFNRISNDAS 123
>gi|15645283|ref|NP_207453.1| hypothetical protein HP0659 [Helicobacter pylori 26695]
gi|2313789|gb|AAD07729.1| predicted coding region HP0659 [Helicobacter pylori 26695]
Length = 414
Score = 41.0 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 175 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 230
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 231 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 289
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 290 IPTEIETVRYTSTNQEDLERAMADPNLEIPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 349
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 350 TPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 402
>gi|301609987|ref|XP_002934538.1| PREDICTED: LOW QUALITY PROTEIN: apolipoprotein B-100-like [Xenopus
(Silurana) tropicalis]
Length = 4625
Score = 41.0 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 40/530 (7%), Positives = 130/530 (24%), Gaps = 39/530 (7%)
Query: 49 QKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
+ + ++ +K L I +++ +N+ ++ + L+ +
Sbjct: 2075 KSINIDQYVKKYKMTLNKIPEQMNDYINNLDLERR--INELKEQLI--------ALTKDV 2124
Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
+ ++ I+ + ++ + E+ T + + V
Sbjct: 2125 KLSSEELYKAISSTLQTARENLMSYLSGIQQYIQENYDLERLTKAIETLLQQFIENVKSL 2184
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+D K + ++ L I + + Q +
Sbjct: 2185 EKQYNIREKAIDMVKGLQNQVEKININELGESLAAWIKNVDDLYQIQANLRQILQKIQSL 2244
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
+ I+ ++ +E I E + + Q E +
Sbjct: 2245 IQSINIEQIAINVREYFQSIDFSEYRQRLMRALPINEINTAAEYIQDYIVILLMEYEVTE 2304
Query: 289 SLKKGKKF-IQLAEEQGKSLSDISL--------------GSFSKEYIPDVSLADSIFSLA 333
+ E +L + K ++ ++
Sbjct: 2305 KFNAVVDKLQDVVSEYEIDKKVQTLLENFIQLLNQQKVKETIKKVTDMLTNIDIKMYYRR 2364
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
+ Y + + F K + + + ++E + + +
Sbjct: 2365 LMAFIQDSVKKVKEYDFKKLVDDINEFLNVCVMKLKSFNYEKFVDDVNNWIQEVRQTIND 2424
Query: 394 FLALGT-SMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + ++ + + + ++ + + A + + E ++ +
Sbjct: 2425 NMKALELPQKAQALKQYMNDVSVMATEYVQQVRDTRLSAVMQWYEDIMSSAILNELRTRI 2484
Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
+ + + IK+ I +KL + + + +S K E
Sbjct: 2485 LQYLEDVRDTINSMNIKQEIQIYLQKLSQAYQRIVTYVTNE--WKNMSEKIEMFAKE--- 2539
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGY------DGISQVFSGP 556
+ + + + + M+ F P
Sbjct: 2540 --HSIEEWAERFKLFIEEGFPVPEMNLGLMTIPPFEVSLRALKDATFKTP 2587
>gi|296271661|ref|YP_003654292.1| SurA domain-containing protein [Arcobacter nitrofigilis DSM 7299]
gi|296095836|gb|ADG91786.1| SurA domain protein [Arcobacter nitrofigilis DSM 7299]
Length = 283
Score = 41.0 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 26/203 (12%), Positives = 51/203 (25%), Gaps = 29/203 (14%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
++ AK L L F + + ++V + + S
Sbjct: 1 MKDKQIKLFAKRVLFTLMATFTF------SNAQMIDALALTVNDEPITTSDINQ------ 48
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
+ A + + L+ Q +E + D V + +
Sbjct: 49 -------------KMAETHLKKADAVSELIDQILYKQELEKQNITVDIFEVNDYLEKLAA 95
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
+G F S L ++ N E+ K L + + + G P D
Sbjct: 96 SNG----MDLYTFKSILRQKNKNFDEFEAQTKKELMKKKLAAKLIRGNIPVATEEDLKIY 151
Query: 185 FYFENRSVDYIVLNNRHVPAIAD 207
+ N A +
Sbjct: 152 YDNNKSMFTTASKINVTQYASKN 174
>gi|271969773|ref|YP_003343969.1| hypothetical protein Sros_8584 [Streptosporangium roseum DSM 43021]
gi|270512948|gb|ACZ91226.1| hypothetical protein Sros_8584 [Streptosporangium roseum DSM 43021]
Length = 206
Score = 41.0 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG-LDKKILDNLV 94
S + + VG ++ + + ++ +++ V+ + G L + +L L
Sbjct: 23 SPTQAGAAAVVGGDRISSNELDGNVREFEAALAK---ANVSVADLKFPGSLPQVVLFQLA 79
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIA 120
+ + E G+ + IA
Sbjct: 80 TAKQYTKVAESKGVTVTDAEIDQVIA 105
>gi|255690563|ref|ZP_05414238.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides
finegoldii DSM 17565]
gi|260624024|gb|EEX46895.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides
finegoldii DSM 17565]
Length = 460
Score = 41.0 bits (93), Expect = 0.69, Method: Composition-based stats.
Identities = 28/291 (9%), Positives = 72/291 (24%), Gaps = 27/291 (9%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ + + ++ K ED K+ + EI
Sbjct: 161 RYFKDLPQDSIPYIPTQVEVQIITLQPKIPISEIEDVKKKLRDYTDRVTKGEIDFSTLAR 220
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
G + F DP V G ++ I++
Sbjct: 221 LYSEDKASAIKGGECGFMGRGM-MDPAYANVAFSLQDPKKVSKIVESEFGYHIIQLIEKR 279
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG------ 525
+ + + V + K E ++ + + + +F + +
Sbjct: 280 GDRVNTRHILLRPKV-----SEKELTEACARLDSIADDIRANKFSFDEAAAVISQDKDTR 334
Query: 526 ------ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-----PIENGLSYVVF 574
++ + I + + D V V + + +
Sbjct: 335 NNHGIMVNVNEHSGITTSKFQMQDLPQDVAKVVDKMNVGEISKAFTMINEKDGKEVCAIV 394
Query: 575 KVTNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K+ K ++ + +++L I + V +++N
Sbjct: 395 KLKTKINGHKATIAEDYQDLKEIVMDKRREEMLQKWILDKQKHTYVRINEN 445
>gi|163856017|ref|YP_001630315.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii DSM
12804]
gi|163259745|emb|CAP42046.1| putative peptidyl-prolyl cis-trans isomerase [Bordetella petrii]
Length = 258
Score = 41.0 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V +V + + S K + + L +++ +++
Sbjct: 20 QNVATVNGKAISQQSLDQFVKLLVSQ-----------GATDTPQLREQVKQEMINRQIFV 68
Query: 101 QFIEDIGL 108
Q E G+
Sbjct: 69 QAAEKDGV 76
>gi|322436235|ref|YP_004218447.1| hypothetical protein AciX9_2642 [Acidobacterium sp. MP5ACTX9]
gi|321163962|gb|ADW69667.1| hypothetical protein AciX9_2642 [Acidobacterium sp. MP5ACTX9]
Length = 257
Score = 41.0 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 16/193 (8%), Positives = 39/193 (20%), Gaps = 20/193 (10%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + S ++ G ++ + L+ + +
Sbjct: 57 DQVVAVVNGDLILESDVAEE---------RRFGAFQPFSNPEGTYSREETVQRLIDRSLI 107
Query: 100 DQFIEDIGLEADHG--------RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
Q L+ D + P + A+ +
Sbjct: 108 LQQAR---LQPDDAVTKEQATSELNELRGVIPACKQYRCETDAGWQKFVEAQGFTVAELT 164
Query: 152 IDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNA 211
+M + F G+R + + +
Sbjct: 165 KHWQQRMQVLKFIEVRFRMGIRITQQEIKDYYDKTLLPAYAKRKATAPKLDTISDRIQEI 224
Query: 212 VLTQWFEKYKDNY 224
+L Q ++
Sbjct: 225 LLQQQVSNLLGDW 237
>gi|291563932|emb|CBL42748.1| PPIC-type PPIASE domain [butyrate-producing bacterium SS3/4]
Length = 324
Score = 40.6 bits (92), Expect = 0.71, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 48/172 (27%), Gaps = 7/172 (4%)
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
Q + + + D V W K EV K +
Sbjct: 119 QYMKELKNAGESSEIDKDVVESLYEDYWKTEKLVETLTGSVNLEVSDSEAKVITVDEIVL 178
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+A++ + + EG +F + K + +I+R +
Sbjct: 179 SDKDQADEALKKVQMEGTDFMTVAKEVSEDQEIEKKISR-----GLRPEAYEKAAYVLAT 233
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAY 609
+ +G Y++ V + + + + + + N+ ++ Y
Sbjct: 234 GEISDVIEADGKYYILRCVNDYDEAATKVRKE--EMVREKRNEVFYETYSEY 283
>gi|86157718|ref|YP_464503.1| hypothetical protein Adeh_1292 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774229|gb|ABC81066.1| hypothetical protein Adeh_1292 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 226
Score = 40.6 bits (92), Expect = 0.71, Method: Composition-based stats.
Identities = 7/63 (11%), Positives = 24/63 (38%)
Query: 563 FPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNL 622
+ + V + + ++ + L + + ++I L+++ + V D
Sbjct: 158 VRVGDDEVDAVLRARGAAAPSPGSREAVRAGLAEERARAQAQALIRELRARAEIRVLDPA 217
Query: 623 IQR 625
++R
Sbjct: 218 LRR 220
>gi|219685280|ref|ZP_03540099.1| conserved hypothetical protein [Borrelia garinii Far04]
gi|219673053|gb|EED30073.1| conserved hypothetical protein [Borrelia garinii Far04]
Length = 500
Score = 40.6 bits (92), Expect = 0.71, Method: Composition-based stats.
Identities = 30/209 (14%), Positives = 59/209 (28%), Gaps = 10/209 (4%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSV--SGSSTVVSVGRQKVPF---SSFINSW 60
R+ L+++ F+I L +F S S Q + + S F
Sbjct: 18 REKKVGIWGIFALILIVFGFIIAPLLPGIFDNAHSSGLKFGSYKGQPIYYKKDSKFAKYV 77
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ S+ G V N V I+ + +
Sbjct: 78 NYYSNLYSRLQGNVKNIN--IDYNAWYLAFMKYVEDIAFFDLIKKYNFYISKEMLNKNLL 135
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
RSP + + FS + + + D + + ++V + + L +
Sbjct: 136 RSPEYLDSNGNFSSKRYN---KASDYQKVKIYDDMVENILFSNVKIFLNSNLIFPDSLFN 192
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPS 209
K R + Y+ L+ + S
Sbjct: 193 LIKDMSTVERHISYLSLSYQDFSNKEAIS 221
>gi|311028971|ref|ZP_07707061.1| hypothetical protein Bm3-1_00161 [Bacillus sp. m3-13]
Length = 402
Score = 40.6 bits (92), Expect = 0.72, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG--RQKVPFSSFIN 58
ML ++K +++ L + F+++ G+ V+V ++V
Sbjct: 1 MLHSMKKLFSGKLSRTKLAITLTSFIVFSTILGFGVFHGTKAAVTVNVDGEEVTV----R 56
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+ + + I +++ V+ E D + D++ + +++ L D
Sbjct: 57 THAKTVADILKELDIEVHPEDKLEPSKDTVVSDSM---QIVWDPAKEVKLVIDDEE 109
>gi|317180456|dbj|BAJ58242.1| hypothetical protein HPF32_0660 [Helicobacter pylori F32]
Length = 411
Score = 40.6 bits (92), Expect = 0.73, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 228 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 286
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 287 IPTEIETVRYTSTNQEDLERAMSNPNLEVPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 346
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 347 TPIMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 399
>gi|313205229|ref|YP_004043886.1| hypothetical protein Palpr_2772 [Paludibacter propionicigenes WB4]
gi|312444545|gb|ADQ80901.1| hypothetical protein Palpr_2772 [Paludibacter propionicigenes WB4]
Length = 571
Score = 40.6 bits (92), Expect = 0.73, Method: Composition-based stats.
Identities = 46/568 (8%), Positives = 134/568 (23%), Gaps = 60/568 (10%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQK 70
+ L + + ++ + T++ +G KV + + +
Sbjct: 18 SIFLISLLGFILLI-------ESCTGYGSNDTLLQIGDYKVTVADYEYMRNENNERYK-- 68
Query: 71 IGFVVNSERARSVGLDKKILDNL-------------------------VSGATLDQFIED 105
+ + +D+ ++ V +
Sbjct: 69 ----LTDADLKKKIIDEGYINAYALENKYDTIASLKTRLDYAIRFYAAVQDGYMWNKKYK 124
Query: 106 IGLEADHGRVWGEIARSPLFHGKDNKF--SHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
L ++ + L + + + + + K +
Sbjct: 125 QALVVSETQLREAYEKQKLEYNIEFILFPDKGLLDKYCSSHSAGLSSSDFNSIKSRIGSK 184
Query: 164 VVGMFVGGMRPSNLLLDQAKRF------YFENRSVDYIVLNNRHVPAIADPSNAVLTQWF 217
+ L + + + +
Sbjct: 185 SGVYSSSTYQRYPFNLPGLDYDKLIQCKKGDVWGPVQTPEGYFIYRMVESRNTFKVPYNT 244
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQ--- 274
K Y E +K + + Y + + + V++
Sbjct: 245 LKPNLQKILEHKLAQKYDNERKKEVLQKAKPVMSDETINYMLSVCDMKARKWNYVDRSKV 304
Query: 275 -LVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
+ + + + G + + G + ++++
Sbjct: 305 LMNYSLDGKTKAFTIADFIGFVENEPLFFGSLTQLSGIKGMLESNILDIYLYSEALKIGM 364
Query: 334 KKGDFTPVIHGSFGYVI----AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389
+ + I +N+ P V+ E +K + K +
Sbjct: 365 LNDPEFLTFKRNRQFKIYTQHYKETNVIPKVVVTEAESRKFYNQNIDKFKTFGSCEVLIY 424
Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ-----LLFRVF 444
+ ++ G SM I+ R + + D A + A +
Sbjct: 425 KFKDSQTAGNSMPPIAVRYTQKPVPQEIQDRAKSIKIPEPTPATLKISDKTLSANIKSAI 484
Query: 445 GKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKAN 504
+ P + + +G Y + +K EEV +++ + + + + + +
Sbjct: 485 IRLMPTQVSMPIQMNNG-YWVIYLKSKSDLIIIPYEEVKSEIAAKLPEILSNQILEQQIS 543
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTN 532
+L L Y + D G +++
Sbjct: 544 KLKLSYKIKTDKIDDYLTEKGKAVIKQK 571
>gi|325474757|gb|EGC77943.1| hypothetical protein HMPREF9353_00790 [Treponema denticola F0402]
Length = 510
Score = 40.6 bits (92), Expect = 0.74, Method: Composition-based stats.
Identities = 20/196 (10%), Positives = 60/196 (30%), Gaps = 8/196 (4%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKV---PFSSFINSWKQ 62
+K + + I V+ + F+ + + G V G ++ S FI+ ++
Sbjct: 5 KKIAASIGGIIVFVLGVIAFVAAPMITD-RASQGFKVVGKWGNVRIDNSSSSPFIDQYQF 63
Query: 63 ELGMISQKIGFVVNSERARSV--GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ ++ +S+ + V ++ + + G RV ++
Sbjct: 64 LANYVERQKMEPEDSQMREYFWQQISYLAFRAAVVQVAMEDEVVNAGYRVPQFRVNKDLI 123
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+ ++ +S + + + ++ I+ Y K + + G +
Sbjct: 124 N--YYLDENGVYSESKYQNTPETTRVTYRKEIEKYIKDNRYIEDLFGNGSGYGLKTSSKE 181
Query: 181 QAKRFYFENRSVDYIV 196
+ +
Sbjct: 182 TDFIVDMAKKERSFKY 197
>gi|258543673|ref|YP_003189106.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
pasteurianus IFO 3283-01]
gi|256634751|dbj|BAI00727.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
pasteurianus IFO 3283-01]
gi|256637807|dbj|BAI03776.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
pasteurianus IFO 3283-03]
gi|256640861|dbj|BAI06823.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
pasteurianus IFO 3283-07]
gi|256643916|dbj|BAI09871.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
pasteurianus IFO 3283-22]
gi|256646971|dbj|BAI12919.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
pasteurianus IFO 3283-26]
gi|256650024|dbj|BAI15965.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
pasteurianus IFO 3283-32]
gi|256653014|dbj|BAI18948.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256656068|dbj|BAI21995.1| peptidyl-prolyl cis-trans isomerase precursor [Acetobacter
pasteurianus IFO 3283-12]
Length = 352
Score = 40.6 bits (92), Expect = 0.74, Method: Composition-based stats.
Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 10/67 (14%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V +V +K+ S + + Q + + +++ L +
Sbjct: 93 VVATVNGEKITLSDVQTAMISLPPQMRQ-----LPPNL-----IFPMLVNQLADQKAILI 142
Query: 102 FIEDIGL 108
+ GL
Sbjct: 143 TAQKEGL 149
>gi|218128453|ref|ZP_03457257.1| hypothetical protein BACEGG_00021 [Bacteroides eggerthii DSM 20697]
gi|217989344|gb|EEC55657.1| hypothetical protein BACEGG_00021 [Bacteroides eggerthii DSM 20697]
Length = 455
Score = 40.6 bits (92), Expect = 0.74, Method: Composition-based stats.
Identities = 30/305 (9%), Positives = 85/305 (27%), Gaps = 31/305 (10%)
Query: 334 KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEE 393
+ + F + P+ ++ I +++++ R+ +
Sbjct: 151 EIKITPAEVRRYFKDLPQDSIPYIPTQVEVQIITQQPKVPLEEIENVKKRLRDFTDRITK 210
Query: 394 FLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKD 453
+++ + ++ +I ++F+G+ + A + + Q +K
Sbjct: 211 GETSFSTLARMYSEDRASAIRGGEIEFSGRGMLDPAYANVAFNLQ----------DPNKV 260
Query: 454 HTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE 513
+ + + +Q+ E R + + K + + + +
Sbjct: 261 SKIVESEYGFHIIQLIEKRGDRIKT----RHILLKPHIPEAALTAGMLRLDSIADDIRNG 316
Query: 514 GKNFRDIGKNLGASLLTTNQI--------NRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+F + L T N N E + + V V +
Sbjct: 317 KFSFEEAASVLSQDKDTRNNHGLLPNPNNNTSKFEMQELPPEIAKVVDKMKVGEISEAFT 376
Query: 566 -----ENGLSYVVFKVTNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
V+ K+ + K + + + +LD I + V
Sbjct: 377 MIPQKTGKEECVIVKLKSRTNGHKATVADDYQNLKEIVLEKRRDQMLDKWIREKQKHTYV 436
Query: 617 TVHDN 621
+++N
Sbjct: 437 RINEN 441
>gi|308182851|ref|YP_003926978.1| hypothetical protein HPPC_03490 [Helicobacter pylori PeCan4]
gi|308065036|gb|ADO06928.1| hypothetical protein HPPC_03490 [Helicobacter pylori PeCan4]
Length = 405
Score = 40.6 bits (92), Expect = 0.75, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 5/137 (3%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 166 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 221
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 222 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKDQFS 280
Query: 194 YIVLNNRHVPAIADPSN 210
+ +
Sbjct: 281 IPTEVETVRYTSTNQED 297
>gi|261839514|gb|ACX99279.1| peptidoglycan-associated lipoprotein precursor [Helicobacter pylori
52]
Length = 426
Score = 40.6 bits (92), Expect = 0.75, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 187 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 242
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 243 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 301
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 302 IPTEIETVRYTSTNQEDLERAMSNPNLEVPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 361
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 362 TPIMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 414
>gi|114704782|ref|ZP_01437690.1| survival protein sura precursor (peptidyl-prolyl cis-trans
isomerase sura) [Fulvimarina pelagi HTCC2506]
gi|114539567|gb|EAU42687.1| survival protein sura precursor (peptidyl-prolyl cis-trans
isomerase sura) [Fulvimarina pelagi HTCC2506]
Length = 308
Score = 40.6 bits (92), Expect = 0.75, Method: Composition-based stats.
Identities = 16/146 (10%), Positives = 32/146 (21%), Gaps = 4/146 (2%)
Query: 87 KKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGI 146
+K D L+ A Q I+ G+ V K N S L G
Sbjct: 62 QKATDELIDEALKRQEIQRQGVNIPDEEVNAAYLN----FAKGNNLSEAQLAEVLGSAGF 117
Query: 147 NEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIA 206
+ + + D+ + + + + V +
Sbjct: 118 SPQAFKDYIRVQMGWGQAASRRIQREERLTEQDAVQRMLAQGGEKPSTTEYTLQQVIFVI 177
Query: 207 DPSNAVLTQWFEKYKDNYRAPEYKRI 232
K + ++
Sbjct: 178 PNGQRGAMLANRKREAQAMRQRFQSC 203
>gi|317012477|gb|ADU83085.1| hypothetical protein HPLT_03295 [Helicobacter pylori Lithuania75]
Length = 419
Score = 40.6 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 180 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 235
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 236 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 294
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 295 IPTEIETVRYTSTNQEDLERAMTDPNLEIPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 354
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 355 TPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 407
>gi|297379859|gb|ADI34746.1| Hypothetical protein HPV225_0667 [Helicobacter pylori v225d]
Length = 411
Score = 40.6 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 228 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 286
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 287 IPTEIETVRYTSTNQEDLERAMSNPNLEIPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 346
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 347 TPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 399
>gi|225163766|ref|ZP_03726066.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
gi|224801636|gb|EEG19932.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
Length = 568
Score = 40.6 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 40/276 (14%), Positives = 75/276 (27%), Gaps = 23/276 (8%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVG-RQKVPFSSFINS 59
M+ I+ + +FL +L V + + S S+ V G KV F
Sbjct: 1 MISWIQNTFQKHFKWLFLTLLVVV----IIGFVFVTGSTSNIVG--GRGHKVARRDFFGI 54
Query: 60 WKQELGMISQKIGFV-------VNSERARSVGLDKKILDNLVSGATLDQFIEDIGL-EAD 111
+ G + L L S + I L
Sbjct: 55 NLNSKDGQERVFGDASLSVTLRYGYIQISEEQLQPFALSRWASIHL----ADTIKLPAPT 110
Query: 112 HGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEK----EYIDHYTKMLSRTDVVGM 167
+ I LF F + + N + + + V +
Sbjct: 111 TDEIIEHIRSLGLFRNAQGAFDPKRYSDFRDQLKTNPRTSEADVDRVIVDDIRVEKVQKL 170
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
G + + ++D ++ L ++FE Y+ P
Sbjct: 171 LAGPGYTLPADVIEQLSQLETRWTLDVASVDYASFSPAVKVGEDTLKKYFEDNALRYQIP 230
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
+I YI F + + +++DE + Y N +
Sbjct: 231 AKVQIRYIDFPTSARLAETSVTDDEAREYYLANTHR 266
>gi|149912930|ref|ZP_01901464.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
AzwK-3b]
gi|149813336|gb|EDM73162.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
AzwK-3b]
Length = 285
Score = 40.6 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 11/95 (11%)
Query: 11 TWVAKIFLVVLFVPFLIWG-LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
T+ K+F + V + + A S + + +V + +
Sbjct: 2 TFRTKLFPALAIVAAVGFAQAPAAQDSPDIDTVLATVNGTDITLG----HMIALRASLPA 57
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIE 104
+ G + E L ILD L+ L Q E
Sbjct: 58 QYGQ-LPPEI-----LFNGILDQLIQQTLLMQSFE 86
>gi|73542615|ref|YP_297135.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
JMP134]
gi|72120028|gb|AAZ62291.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ralstonia eutropha
JMP134]
Length = 272
Score = 40.6 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 25/105 (23%), Gaps = 21/105 (20%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
+V + + F L + + SV +P S + +Q
Sbjct: 8 LIVTIALAF-------GLQAGLSVAHAASVNGVAIPDSQVTATLQQSR------------ 48
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
A + I L++ Q V I
Sbjct: 49 --LADTPQARSAITQQLIARELFRQEAAKDKSLESRPDVQQAIRD 91
>gi|320450789|ref|YP_004202885.1| peptidyl-prolyl cis-trans isomerase [Thermus scotoductus SA-01]
gi|320150959|gb|ADW22337.1| peptidyl-prolyl cis-trans isomerase [Thermus scotoductus SA-01]
Length = 307
Score = 40.6 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 12/124 (9%), Positives = 38/124 (30%), Gaps = 3/124 (2%)
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEM 559
A +++ +K G+ F + + + + + + + +
Sbjct: 186 EAAKEVLARLAK-GEAFAQVAREVSQDPGSKEAGGDLGCEPEGTYIPAFEKALLALKPGE 244
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
V P+ + V + ++ L Q + + ++ +L Y +T+
Sbjct: 245 V-SPPVGTEFGFHVILLERLVPPGRYPLEEVAEELAQGVKDKAWERLVRFLIRPYPITLF 303
Query: 620 DNLI 623
+
Sbjct: 304 PERL 307
>gi|296532547|ref|ZP_06895259.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC
49957]
gi|296267124|gb|EFH13037.1| peptidyl-prolyl cis-trans isomerase [Roseomonas cervicalis ATCC
49957]
Length = 330
Score = 40.6 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 11/90 (12%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V V ++ S + Q G + ++ +LD L++ L
Sbjct: 53 NPVVARVDGAELRRSDIEAALSQLPGELRAAPPQMLFP----------LVLDQLIAQQAL 102
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
GL+ V I R+ +
Sbjct: 103 VNAARAQGLD-KDPEVQAAIRRAEEEQLQQ 131
>gi|99036063|ref|ZP_01315098.1| hypothetical protein Wendoof_01000044 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 63
Score = 40.6 bits (92), Expect = 0.76, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 29 GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK 88
G+ + L V VG++ + + + ++ IS G + E+ + L
Sbjct: 2 GIGNLLSGDDEKEEVARVGKEVITSDEYKSLYQNYGKQIS---GSDASREQVKK--LKYD 56
Query: 89 ILDNLVS 95
+L+ L+
Sbjct: 57 LLNALIE 63
>gi|207109059|ref|ZP_03243221.1| hypothetical protein HpylH_06914 [Helicobacter pylori
HPKX_438_CA4C1]
Length = 240
Score = 40.6 bits (92), Expect = 0.78, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 5/137 (3%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 79 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 134
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 135 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 193
Query: 194 YIVLNNRHVPAIADPSN 210
+ +
Sbjct: 194 IPTEIETVRYTSTNQED 210
>gi|116334085|ref|YP_795612.1| peptidylprolyl isomerase [Lactobacillus brevis ATCC 367]
gi|122269231|sp|Q03QE1|PRSA_LACBA RecName: Full=Foldase protein prsA; Flags: Precursor
gi|116099432|gb|ABJ64581.1| Parvulin-like peptidyl-prolyl isomerase [Lactobacillus brevis ATCC
367]
Length = 305
Score = 40.6 bits (92), Expect = 0.78, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 41/143 (28%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW------KQE 63
+ W + ++L V GS TV + K+ S++ +S KQ
Sbjct: 2 KKWFIALAGLLLTVTLA----------GCGSQTVATTNGGKITESAYYSSLKGTSSGKQV 51
Query: 64 LGMI------SQKIGFVVNSERARSV-------------------GLDKKILDNLVSGAT 98
L + ++ G V+ G+ + L +
Sbjct: 52 LQQMILNKVLEKQYGDKVSKSAVTKQFDKYKSQYGSSFSSVLSQSGMTQSSLKTEIRSNL 111
Query: 99 LDQFIEDIGLEADHGRVWGEIAR 121
L + + ++ +
Sbjct: 112 LLKEAVKDNVTVTDAQLKKQFKS 134
>gi|315928902|gb|EFV08160.1| surA N-terminal domain protein [Campylobacter jejuni subsp. jejuni
305]
Length = 186
Score = 40.6 bits (92), Expect = 0.78, Method: Composition-based stats.
Identities = 19/188 (10%), Positives = 57/188 (30%), Gaps = 25/188 (13%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + F + + + + ++ V V ++ + + K
Sbjct: 4 ILLSFAFF--ASLASANTINAIAVVVDKEPITTYDIDQTMKALKID-------------- 47
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
K L L++ ++ +G+ + + I + NK + + F +
Sbjct: 48 -----RNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLA----QNKTTLNAFKAN 98
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L + + +++ ++ K L + + + K F + N
Sbjct: 99 LKSKNQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINA 158
Query: 201 HVPAIADP 208
++ +P
Sbjct: 159 NIYLSNNP 166
>gi|255530404|ref|YP_003090776.1| hypothetical protein Phep_0490 [Pedobacter heparinus DSM 2366]
gi|255343388|gb|ACU02714.1| hypothetical protein Phep_0490 [Pedobacter heparinus DSM 2366]
Length = 197
Score = 40.6 bits (92), Expect = 0.78, Method: Composition-based stats.
Identities = 15/171 (8%), Positives = 48/171 (28%), Gaps = 9/171 (5%)
Query: 458 LPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNF 517
+ + ++W K + +++ + + + Y E +++
Sbjct: 30 ISNKEFIWFYKKNHLGNTGVAYKDLDAYLNQYINFKLKVLDAKEMGLDKDTAYLAEVQHY 89
Query: 518 RDIGKNLGASLLTTNQ--INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFK 575
T + + R + + +F+ + + VF
Sbjct: 90 ETALAAQKRPAKTNPEYELIRNEYRDAAL-------MFNVSEIKIWDKAQNDDAQLRVFY 142
Query: 576 VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
N ++ + L I L+ +Y+V ++ +++
Sbjct: 143 DKNKSSYLPGSFEEVKGKVIADYQDRLEKEWINTLRKKYTVKINQAEVKKL 193
>gi|332673506|gb|AEE70323.1| SurA domain protein [Helicobacter pylori 83]
Length = 411
Score = 40.6 bits (92), Expect = 0.79, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 228 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 286
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 287 IPTEIETVRYTSTNQEDLERAMADPNLEVPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 346
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 347 TPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 399
>gi|224536050|ref|ZP_03676589.1| hypothetical protein BACCELL_00914 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522333|gb|EEF91438.1| hypothetical protein BACCELL_00914 [Bacteroides cellulosilyticus
DSM 14838]
Length = 454
Score = 40.6 bits (92), Expect = 0.79, Method: Composition-based stats.
Identities = 32/281 (11%), Positives = 78/281 (27%), Gaps = 24/281 (8%)
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
P ++ + + ++ + K + ED K + E + D
Sbjct: 167 PQDSIPYIPTQVEVQIITQQPKIPLEEIEDVKSRLREYTDRVNKGESFSMLARLYSDDRG 226
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
G ++ + + V +K + + + +Q+ E R +
Sbjct: 227 TAINGGEMPFTGRGYL---DPAFANVAFNLQDPNKVSKIVESEYGFHIIQLMEKRGDRIK 283
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTN----- 532
V + K + +++ + + + F + L T N
Sbjct: 284 ----VRHILLKPHVPEEALMAGTARLDSIADDIRNGKFTFEEAASVLSQDKDTRNNHGLL 339
Query: 533 ---QINRMDNENKFFGYDGISQVFSGPVEMVKCFPI-----ENGLSYVVFKVTNS----K 580
Q N E + + V V + V+ K+ + K
Sbjct: 340 PNPQTNTSKFEMQELPPEIAKVVDKMKVGEISEAFTMIPQKTGKEECVIVKLKSRINGHK 399
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
++ + + ++LD I + V +++N
Sbjct: 400 ATISEDYQNLKEIVLEKRRDEMLDKWIREKQKHTYVRINEN 440
>gi|313201571|ref|YP_004040229.1| EpsD family peptidyl-prolyl cis-trans isomerase [Methylovorus sp.
MP688]
gi|312440887|gb|ADQ84993.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Methylovorus sp.
MP688]
Length = 276
Score = 40.6 bits (92), Expect = 0.80, Method: Composition-based stats.
Identities = 8/76 (10%), Positives = 23/76 (30%), Gaps = 11/76 (14%)
Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
+ V +++ + K + S + + K++LD L+ +
Sbjct: 2 IAKVDGKEISLLQLNQAIKNVPNVNSSNV-----------DQVRKQLLDKLIDQQIVLNV 50
Query: 103 IEDIGLEADHGRVWGE 118
+ ++ V
Sbjct: 51 ALEQKIDRSADVVASI 66
>gi|315586661|gb|ADU41042.1| SurA domain protein [Helicobacter pylori 35A]
Length = 405
Score = 40.6 bits (92), Expect = 0.80, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 166 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 221
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 222 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 280
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 281 IPTEIETVRYTSTNQEDLERAMSNPNLEVPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 340
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 341 TPIMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 393
>gi|83815274|ref|YP_445915.1| hypothetical protein SRU_1798 [Salinibacter ruber DSM 13855]
gi|83756668|gb|ABC44781.1| hypothetical protein SRU_1798 [Salinibacter ruber DSM 13855]
Length = 304
Score = 40.6 bits (92), Expect = 0.82, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Query: 28 WGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK 87
GL+ S V VG + + +G V +S A K
Sbjct: 36 AGLAGCQTEAPPDSYVARVGTHYLTGADLDRML--------AGMGPVRDSTEA-----RK 82
Query: 88 KILDNLVSGATLDQFIEDIGLEADHG 113
+ +D V+ L + E + L ++
Sbjct: 83 QAVDQWVTRTLLYREAERLNLSSNDE 108
>gi|166154567|ref|YP_001654685.1| hypothetical protein CTL0609 [Chlamydia trachomatis 434/Bu]
gi|166155442|ref|YP_001653697.1| hypothetical protein CTLon_0607 [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|255348719|ref|ZP_05380726.1| hypothetical protein Ctra70_01875 [Chlamydia trachomatis 70]
gi|255503259|ref|ZP_05381649.1| hypothetical protein Ctra7_01885 [Chlamydia trachomatis 70s]
gi|255506937|ref|ZP_05382576.1| hypothetical protein CtraD_01865 [Chlamydia trachomatis D(s)2923]
gi|301335830|ref|ZP_07224074.1| hypothetical protein CtraL_03350 [Chlamydia trachomatis L2tet1]
gi|165930555|emb|CAP04050.1| putative exported protein [Chlamydia trachomatis 434/Bu]
gi|165931430|emb|CAP07004.1| putative exported protein [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|289525396|emb|CBJ14873.1| putative exported protein [Chlamydia trachomatis Sweden2]
gi|296434948|gb|ADH17126.1| hypothetical protein E150_01860 [Chlamydia trachomatis E/150]
gi|296438668|gb|ADH20821.1| hypothetical protein E11023_01850 [Chlamydia trachomatis E/11023]
Length = 353
Score = 40.6 bits (92), Expect = 0.82, Method: Composition-based stats.
Identities = 25/209 (11%), Positives = 53/209 (25%), Gaps = 21/209 (10%)
Query: 18 LVVLFVPFLIWGLSDALFSVS---GSSTVV-------SVG-RQKVPFSSFINSWKQELGM 66
L + + +G A S S S V V V I
Sbjct: 13 LGITIFSGIAFGYEGAFSSGSFEQNPSGVAIHNRVLFKVDEDTVVTTLDVIRKLNILFYS 72
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
++ V++ + +L+ +++ + + + D V EI
Sbjct: 73 TCPQLVDSVSARSQYYSAMWPVVLETVINEFLMAADAKAKKIFIDPTSVNQEIEAM---- 128
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
F D + ++ + ++L V GM V + + +Y
Sbjct: 129 -----FGRD-LSPFAKFFDMTPEDVFNVVHRILVAQRVEGMMVRSRVMLKVTPGMVREYY 182
Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ + + L
Sbjct: 183 QKLADEAAQITQWTYRVLTIKAGLEFLAH 211
>gi|15605078|ref|NP_219863.1| hypothetical protein CT355 [Chlamydia trachomatis D/UW-3/CX]
gi|255311160|ref|ZP_05353730.1| hypothetical protein Ctra62_01835 [Chlamydia trachomatis 6276]
gi|255317461|ref|ZP_05358707.1| hypothetical protein Ctra6_01830 [Chlamydia trachomatis 6276s]
gi|14195434|sp|O84359|Y355_CHLTR RecName: Full=Uncharacterized protein CT_355; Flags: Precursor
gi|3328776|gb|AAC67950.1| hypothetical protein CT_355 [Chlamydia trachomatis D/UW-3/CX]
gi|296435874|gb|ADH18048.1| hypothetical protein G9768_01825 [Chlamydia trachomatis G/9768]
gi|296436800|gb|ADH18970.1| hypothetical protein G11222_01830 [Chlamydia trachomatis G/11222]
gi|296437734|gb|ADH19895.1| hypothetical protein G11074_01825 [Chlamydia trachomatis G/11074]
gi|297140233|gb|ADH96991.1| hypothetical protein CTG9301_01825 [Chlamydia trachomatis G/9301]
gi|297748485|gb|ADI51031.1| Hypothetical protein CTDEC_0355 [Chlamydia trachomatis D-EC]
gi|297749365|gb|ADI52043.1| Hypothetical protein CTDLC_0355 [Chlamydia trachomatis D-LC]
Length = 353
Score = 40.6 bits (92), Expect = 0.82, Method: Composition-based stats.
Identities = 25/209 (11%), Positives = 53/209 (25%), Gaps = 21/209 (10%)
Query: 18 LVVLFVPFLIWGLSDALFSVS---GSSTVV-------SVG-RQKVPFSSFINSWKQELGM 66
L + + +G A S S S V V V I
Sbjct: 13 LGITIFSGIAFGYEGAFSSGSFEQNPSGVAIHNRVLFKVDEDTVVTTLDVIRKLNILFYS 72
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
++ V++ + +L+ +++ + + + D V EI
Sbjct: 73 TCPQLVDSVSARSQYYSAMWPVVLETVINEFLMAADAKAKKIFIDPTSVNQEIEAM---- 128
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
F D + ++ + ++L V GM V + + +Y
Sbjct: 129 -----FGRD-LSPFAKFFDMTPEDVFNVVHRILVAQRVEGMMVRSRVMLKVTPGMVREYY 182
Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQ 215
+ + + L
Sbjct: 183 QKLADEAAQITQWTYRVLTIKAGLEFLAH 211
>gi|317178978|dbj|BAJ56766.1| hypothetical protein HPF30_0669 [Helicobacter pylori F30]
Length = 416
Score = 40.6 bits (92), Expect = 0.83, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 177 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 232
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 233 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 291
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 292 IPTEIETVRYTSTNQEDLERAMSNPNLEVPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 351
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 352 TPIMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 404
>gi|168335025|ref|ZP_02693139.1| putative peptidyl-prolyl cis-trans isomerase, PpiC-type
[Epulopiscium sp. 'N.t. morphotype B']
Length = 525
Score = 40.6 bits (92), Expect = 0.83, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 40/121 (33%), Gaps = 2/121 (1%)
Query: 492 TVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQ 551
+ + E + AN+L+ + K G++ + + +
Sbjct: 234 SDEVKAEKLALANELL-DRIKAGEDIGKXAAEYSEDPGSKATNGEYTFGRGEMVPEFEAA 292
Query: 552 VFSGPVEMVKCFPIENGLSYVVFK-VTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL 610
F + P+E Y + + + + + +D++I+Y + + S +
Sbjct: 293 AFDNADGAIWAEPVETSYGYHIGQTIDHIEADEDAIRDEYIAYAQMNFAGEEIMSFVEAA 352
Query: 611 K 611
K
Sbjct: 353 K 353
>gi|209548668|ref|YP_002280585.1| peptidyl-prolyl cis-trans isomerase protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209534424|gb|ACI54359.1| putative peptidyl-prolyl cis-trans isomerase protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 314
Score = 40.6 bits (92), Expect = 0.84, Method: Composition-based stats.
Identities = 17/164 (10%), Positives = 38/164 (23%), Gaps = 18/164 (10%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + +++ A + L+ Q +
Sbjct: 35 AVVNGTAITSGDVAK-----RQAFMRLQHTKADAKAAE---------EQLIDETLKRQEV 80
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + V AR NK S + L R G+ + +S
Sbjct: 81 SRVHMSVSQQDVDASFARFSA----GNKLSVEQMSQILDRAGVGVDHFKGFIAVQMSWPR 136
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
VV G + ++ + + + +
Sbjct: 137 VVNARYGSTSRLSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIP 180
>gi|291286199|ref|YP_003503015.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
acetiphilus DSM 12809]
gi|290883359|gb|ADD67059.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Denitrovibrio
acetiphilus DSM 12809]
Length = 318
Score = 40.6 bits (92), Expect = 0.84, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 37/123 (30%), Gaps = 15/123 (12%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGS-------STVVSVGRQKVPFSSFINSWKQELGMI 67
KI ++ + + + +T V++ +++ +
Sbjct: 5 KILIITIVLCLSLVSCFPGKAGKKNGLTEEEIANTFVTINGERITKDEYE--------AF 56
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
V+++E + + + + + + L Q G+ D G+ + G
Sbjct: 57 ISYSNSVMDTETRTNPAVVEALHKDFIEHRLLLQKAVAEGVVVDEGKFKDIVESFQTIKG 116
Query: 128 KDN 130
+
Sbjct: 117 QKM 119
>gi|217033711|ref|ZP_03439138.1| hypothetical protein HP9810_5g53 [Helicobacter pylori 98-10]
gi|216943900|gb|EEC23337.1| hypothetical protein HP9810_5g53 [Helicobacter pylori 98-10]
Length = 411
Score = 40.6 bits (92), Expect = 0.84, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 228 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 286
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 287 IPTEIETVRYTSTNQEDLERAMSNPNLEVPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 346
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 347 TPIMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 399
>gi|254451174|ref|ZP_05064611.1| foldase protein PrsA [Octadecabacter antarcticus 238]
gi|198265580|gb|EDY89850.1| foldase protein PrsA [Octadecabacter antarcticus 238]
Length = 284
Score = 40.6 bits (92), Expect = 0.84, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 15 KIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
K+ F + DA ++ + V SV + + Q Q
Sbjct: 6 KLLASAALFTFTASFAYGDAHTDMTAETVVASVNGSDITLGQLVMLRSQLPEQYQQL--- 62
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
++ GL +++++ + G TL+ + +G+ +
Sbjct: 63 ---ADDVVFNGLIEQLVNQQLLGDTLEVEPKRVGIAIANE 99
>gi|119897994|ref|YP_933207.1| putative cell binding factor [Azoarcus sp. BH72]
gi|119670407|emb|CAL94320.1| putative cell binding factor [Azoarcus sp. BH72]
Length = 260
Score = 40.6 bits (92), Expect = 0.85, Method: Composition-based stats.
Identities = 17/163 (10%), Positives = 49/163 (30%), Gaps = 9/163 (5%)
Query: 463 YMWVQIKESIPARDRKLEEVLTDVK--------KDWKTVKTAEEVSSKANQLVLEYSKEG 514
+ +++ + E+ + K++K E A +++ + G
Sbjct: 99 LIRAYLQDYVKNNPVTDAELKKEYDSIKSRMGDKEYKPRHVLVESEEHAKEIIGKL-NGG 157
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
F D+ K + F + P+++ + V
Sbjct: 158 AKFDDLAKESRDPGSKDKGGDLGWTTPDRFVKPFSDAMVKLEKGKYTAAPVKSDYGFHVI 217
Query: 575 KVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + + ++ L Q + + ++ I L+++ V
Sbjct: 218 MLDDVRELKAPPFEEVKPQLQQRLQQQKVEKHILDLRTKAKVQ 260
>gi|42780354|ref|NP_977601.1| peptidylprolyl isomerase [Bacillus cereus ATCC 10987]
gi|42736273|gb|AAS40209.1| protein export protein prsA [Bacillus cereus ATCC 10987]
Length = 285
Score = 40.6 bits (92), Expect = 0.85, Method: Composition-based stats.
Identities = 34/265 (12%), Positives = 84/265 (31%), Gaps = 16/265 (6%)
Query: 365 QEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKD 424
K D T ++ + K+L++ + +++ + D +
Sbjct: 21 CGQKNDSDTVATATDSTITKSDFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDDDVDKEL 80
Query: 425 VKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLT 484
K K +K L + L + I E ++V
Sbjct: 81 QKAKNQYGDQFKNVLKNNGLKDEADFKNQIKFKLAMNEAIKKSITE---------KDVKD 131
Query: 485 DVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF- 543
K + K ++A ++ + G +F ++ K LL+ + + N
Sbjct: 132 HYKPEIKASHILVSDENEAKEIKKKLD-AGASFEELAKQESQDLLSKEKGGDLGYFNSGR 190
Query: 544 FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYLTQMMNKD 601
+ + + V + P+ + Y + K+T+ K + KD L + D
Sbjct: 191 MAPEFETAAYKLKVGQISN-PVASPNGYHIIKLTDKKALKPYDEVKDSIRKNLEEERISD 249
Query: 602 --LLDSVIAYLKSQYSVTVHDNLIQ 624
++ + ++ ++D+ ++
Sbjct: 250 PIFGKKLLQKELKKANIKINDSELK 274
>gi|68160702|gb|AAY86797.1| lr0370 [Lactobacillus reuteri]
Length = 312
Score = 40.6 bits (92), Expect = 0.86, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 81/301 (26%), Gaps = 40/301 (13%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
S+ +A I L +P G + V + K+ S + +S KQ
Sbjct: 2 KSKKLIAIIAGAALMMPLAACG----------NKAVATTSGGKITESEYYSSMKQTSAG- 50
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
K++L ++ L+ + G E +V + +G
Sbjct: 51 -------------------KQVLQQMILDKVLE---KQYGKEVSDKQVNAQYNTYKNEYG 88
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
D F + L + + EK L T + +
Sbjct: 89 AD-------FNAYLQSQNLTEKSLKQQIRSNLLLTAAARHYSHITNKQINKQWTKYQPKV 141
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
+ ++ ++ ++ + F+K + + + +
Sbjct: 142 QTATILVGSKSDAEDIINQLNDSSNKYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQL 201
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
S + A K E +P V + + +S Q+ +E +
Sbjct: 202 DSAYKKAAFKLKTGEYTTTPVKTDDGYQVIYMIEHPAKGKKSQHINDLKNQIVQENMNNQ 261
Query: 308 S 308
+
Sbjct: 262 N 262
>gi|148544489|ref|YP_001271859.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lactobacillus
reuteri DSM 20016]
gi|184153854|ref|YP_001842195.1| peptidylprolyl isomerase [Lactobacillus reuteri JCM 1112]
gi|227363083|ref|ZP_03847219.1| peptidylprolyl isomerase [Lactobacillus reuteri MM2-3]
gi|325682810|ref|ZP_08162326.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus reuteri MM4-1A]
gi|148531523|gb|ABQ83522.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lactobacillus
reuteri DSM 20016]
gi|183225198|dbj|BAG25715.1| peptidylprolyl isomerase [Lactobacillus reuteri JCM 1112]
gi|227071904|gb|EEI10191.1| peptidylprolyl isomerase [Lactobacillus reuteri MM2-3]
gi|324977160|gb|EGC14111.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus reuteri MM4-1A]
Length = 312
Score = 40.6 bits (92), Expect = 0.86, Method: Composition-based stats.
Identities = 38/301 (12%), Positives = 82/301 (27%), Gaps = 40/301 (13%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
S+ +A I V L +P G + V + K+ S + +S KQ
Sbjct: 2 KSKKLIAIIAGVALMMPLAACG----------NKAVATTSGGKITESEYYSSMKQTSAG- 50
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
K++L ++ L+ + G E +V + +G
Sbjct: 51 -------------------KQVLQQMILDKVLE---KQYGKEVSDKQVNAQYNTYKNEYG 88
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
D F + L + + EK L T + +
Sbjct: 89 SD-------FNAYLQSQNLTEKSLKQQIRSNLLLTAAARHYSHITTKQINKQWTKYQPKV 141
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
+ ++ ++ ++ + F+K + + + +
Sbjct: 142 QTATILVGSKSDAEDIINQLNDSSNKYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQL 201
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
S + A K E +P V + + +S Q+ +E +
Sbjct: 202 DSAYKKAAFKLKTGEYTTTPVKTDDGYQVIYMIEHPAKGKKSQHINDLKNQIVQENMNNQ 261
Query: 308 S 308
+
Sbjct: 262 N 262
>gi|227543912|ref|ZP_03973961.1| peptidylprolyl isomerase [Lactobacillus reuteri CF48-3A]
gi|300909659|ref|ZP_07127120.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus reuteri SD2112]
gi|227186113|gb|EEI66184.1| peptidylprolyl isomerase [Lactobacillus reuteri CF48-3A]
gi|300893524|gb|EFK86883.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus reuteri SD2112]
Length = 312
Score = 40.6 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 37/301 (12%), Positives = 81/301 (26%), Gaps = 40/301 (13%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
S+ +A I L +P G + V + K+ S + +S KQ
Sbjct: 2 KSKKLIAIIAGAALMMPLAACG----------NKAVATTSGGKITESEYYSSMKQTSAG- 50
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
K++L ++ L+ + G E +V + +G
Sbjct: 51 -------------------KQVLQQMILDKVLE---KQYGKEVSDKQVNAQYNTYKNEYG 88
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
D F + L + + EK L T + +
Sbjct: 89 SD-------FNAYLQSQNLTEKSLKQQIRSNLLLTAAARHYSHITNKQINKQWTKYQPKV 141
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
+ ++ ++ ++ + F+K + + + +
Sbjct: 142 QTATILVGSKSDAEDIINQLNDSSNKYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQL 201
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
S + A K E +P V + + +S Q+ +E +
Sbjct: 202 DSAYKKAAFKLKTGEYTTTPVKTDDGYQVIYMIEHPAKGKKSQHINDLKNQIVQENMNNQ 261
Query: 308 S 308
+
Sbjct: 262 N 262
>gi|223462235|gb|AAI50810.1| Laminin B1 subunit 1 [Mus musculus]
Length = 1834
Score = 40.6 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 28/323 (8%), Positives = 91/323 (28%), Gaps = 29/323 (8%)
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ ++ + V + + + K A + ++ K++E
Sbjct: 1488 AWQKAMDFDRDVLSALAEVEQLSKMVSEAKVRADEAKQNAQDVLLKTNATKEKVDKSNED 1547
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
++ K++ FL ++ + + I ++ ++ + + + +
Sbjct: 1548 LRNLIKQIRNFLT-----EDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVETL 1602
Query: 444 FGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+ L + + + +S + V +++ K AE+
Sbjct: 1603 SQVEVILQQSAADIARAELLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIK 1662
Query: 502 KANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+A++ + E + + + + + ++ R +N
Sbjct: 1663 QADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQNSGEAEYIEK 1722
Query: 551 QVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS- 605
V+S +G V + K + + L L +
Sbjct: 1723 VVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQNEAKTLLAQAN 1782
Query: 606 ----VIAYLKSQYSVTVHDNLIQ 624
++ L+ +Y + ++
Sbjct: 1783 SKLQLLEDLERKY--EDNQKYLE 1803
>gi|148704971|gb|EDL36918.1| laminin B1 subunit 1 [Mus musculus]
Length = 1849
Score = 40.6 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 28/323 (8%), Positives = 91/323 (28%), Gaps = 29/323 (8%)
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ ++ + V + + + K A + ++ K++E
Sbjct: 1503 AWQKAMDFDRDVLSALAEVEQLSKMVSEAKVRADEAKQNAQDVLLKTNATKEKVDKSNED 1562
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
++ K++ FL ++ + + I ++ ++ + + + +
Sbjct: 1563 LRNLIKQIRNFLT-----EDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVETL 1617
Query: 444 FGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+ L + + + +S + V +++ K AE+
Sbjct: 1618 SQVEVILQQSAADIARAELLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIK 1677
Query: 502 KANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+A++ + E + + + + + ++ R +N
Sbjct: 1678 QADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQNSGEAEYIEK 1737
Query: 551 QVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS- 605
V+S +G V + K + + L L +
Sbjct: 1738 VVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQNEAKTLLAQAN 1797
Query: 606 ----VIAYLKSQYSVTVHDNLIQ 624
++ L+ +Y + ++
Sbjct: 1798 SKLQLLEDLERKY--EDNQKYLE 1818
>gi|114326497|ref|NP_032508.2| laminin subunit beta-1 [Mus musculus]
Length = 1834
Score = 40.6 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 28/323 (8%), Positives = 91/323 (28%), Gaps = 29/323 (8%)
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ ++ + V + + + K A + ++ K++E
Sbjct: 1488 AWQKAMDFDRDVLSALAEVEQLSKMVSEAKVRADEAKQNAQDVLLKTNATKEKVDKSNED 1547
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
++ K++ FL ++ + + I ++ ++ + + + +
Sbjct: 1548 LRNLIKQIRNFLT-----EDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVETL 1602
Query: 444 FGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+ L + + + +S + V +++ K AE+
Sbjct: 1603 SQVEVILQQSAADIARAELLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIK 1662
Query: 502 KANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+A++ + E + + + + + ++ R +N
Sbjct: 1663 QADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQNSGEAEYIEK 1722
Query: 551 QVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS- 605
V+S +G V + K + + L L +
Sbjct: 1723 VVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQNEAKTLLAQAN 1782
Query: 606 ----VIAYLKSQYSVTVHDNLIQ 624
++ L+ +Y + ++
Sbjct: 1783 SKLQLLEDLERKY--EDNQKYLE 1803
>gi|12851534|dbj|BAB29079.1| unnamed protein product [Mus musculus]
Length = 911
Score = 40.6 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 28/323 (8%), Positives = 91/323 (28%), Gaps = 29/323 (8%)
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ ++ + V + + + K A + ++ K++E
Sbjct: 565 AWQKAMDFDRDVLSALAEVEQLSKMVSEAKVRADEAKQNAQDVLLKTNATKEKVDKSNED 624
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
++ K++ FL ++ + + I ++ ++ + + + +
Sbjct: 625 LRNLIKQIRNFLT-----EDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVETL 679
Query: 444 FGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+ L + + + +S + V +++ K AE+
Sbjct: 680 SQVEVILQQSAADIARAELLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIK 739
Query: 502 KANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+A++ + E + + + + + ++ R +N
Sbjct: 740 QADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQNSGEAEYIEK 799
Query: 551 QVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS- 605
V+S +G V + K + + L L +
Sbjct: 800 VVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQNEAKTLLAQAN 859
Query: 606 ----VIAYLKSQYSVTVHDNLIQ 624
++ L+ +Y + ++
Sbjct: 860 SKLQLLEDLERKY--EDNQKYLE 880
>gi|21595540|gb|AAH32276.1| Lamb1-1 protein [Mus musculus]
Length = 984
Score = 40.6 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 28/323 (8%), Positives = 91/323 (28%), Gaps = 29/323 (8%)
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ ++ + V + + + K A + ++ K++E
Sbjct: 638 AWQKAMDFDRDVLSALAEVEQLSKMVSEAKVRADEAKQNAQDVLLKTNATKEKVDKSNED 697
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
++ K++ FL ++ + + I ++ ++ + + + +
Sbjct: 698 LRNLIKQIRNFLT-----EDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVETL 752
Query: 444 FGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+ L + + + +S + V +++ K AE+
Sbjct: 753 SQVEVILQQSAADIARAELLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIK 812
Query: 502 KANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+A++ + E + + + + + ++ R +N
Sbjct: 813 QADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQNSGEAEYIEK 872
Query: 551 QVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS- 605
V+S +G V + K + + L L +
Sbjct: 873 VVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQNEAKTLLAQAN 932
Query: 606 ----VIAYLKSQYSVTVHDNLIQ 624
++ L+ +Y + ++
Sbjct: 933 SKLQLLEDLERKY--EDNQKYLE 953
>gi|74181151|dbj|BAE27840.1| unnamed protein product [Mus musculus]
Length = 1834
Score = 40.6 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 28/323 (8%), Positives = 91/323 (28%), Gaps = 29/323 (8%)
Query: 324 SLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEK 383
+ ++ + V + + + K A + ++ K++E
Sbjct: 1488 AWQKAMDFDRDVLSALAEVEQLSKMVSEAKVRADEAKQNAQDVLLKTNATKEKVDKSNED 1547
Query: 384 VKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRV 443
++ K++ FL ++ + + I ++ ++ + + + +
Sbjct: 1548 LRNLIKQIRNFLT-----EDSADLDSIEAVANEVLKMEMPSTPQQLQNLTEDIRERVETL 1602
Query: 444 FGKDDPLSKDHTVALPDGSYM--WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSS 501
+ L + + + +S + V +++ K AE+
Sbjct: 1603 SQVEVILQQSAADIARAELLLEEAKRASKSATDVKVTADMVKEALEEAEKAQVAAEKAIK 1662
Query: 502 KANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+A++ + E + + + + + ++ R +N
Sbjct: 1663 QADEDIQGTQNLLTSIESETAASEETLTNASQRISKLERNVEELKRKAAQNSGEAEYIEK 1722
Query: 551 QVFSGPVEMVKCFPIENGL----SYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS- 605
V+S +G V + K + + L L +
Sbjct: 1723 VVYSVKQNADDVKKTLDGELDEKYKKVESLIAQKTEESADARRKAELLQNEAKTLLAQAN 1782
Query: 606 ----VIAYLKSQYSVTVHDNLIQ 624
++ L+ +Y + ++
Sbjct: 1783 SKLQLLEDLERKY--EDNQKYLE 1803
>gi|308063548|gb|ADO05435.1| hypothetical protein HPSAT_03485 [Helicobacter pylori Sat464]
Length = 416
Score = 40.6 bits (92), Expect = 0.87, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 177 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 232
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 233 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 291
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 292 IPTEIETVRYTSTNQEDLERAMSNPNLEIPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 351
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 352 TPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 404
>gi|304439703|ref|ZP_07399603.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371809|gb|EFM25415.1| peptidyl-prolyl cis-trans isomerase [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 261
Score = 40.6 bits (92), Expect = 0.88, Method: Composition-based stats.
Identities = 7/85 (8%), Positives = 21/85 (24%), Gaps = 9/85 (10%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
+ + V +++ Q + +++D
Sbjct: 5 SHIGGNMNKEILAKVNDREITNEDLNIFLSQL---------DPNTRMYFTQNNMMDQVVD 55
Query: 92 NLVSGATLDQFIEDIGLEADHGRVW 116
L+ + + G++ D V
Sbjct: 56 ELIYQEMIYMEAIEKGMDKDEDFVK 80
>gi|70731347|ref|YP_261088.1| trigger factor [Pseudomonas fluorescens Pf-5]
gi|118574080|sp|Q4K9J5|TIG_PSEF5 RecName: Full=Trigger factor; Short=TF
gi|68345646|gb|AAY93252.1| trigger factor [Pseudomonas fluorescens Pf-5]
Length = 436
Score = 40.6 bits (92), Expect = 0.89, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 36/108 (33%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ +V G + + ++
Sbjct: 298 NPIEVPKALLDNEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDEDRVRELIQEMASAYQEPEQVVSWYYKNEQQLNEVRSVVLEEQ 405
>gi|219667062|ref|YP_002457497.1| hypothetical protein Dhaf_1001 [Desulfitobacterium hafniense DCB-2]
gi|219537322|gb|ACL19061.1| hypothetical protein Dhaf_1001 [Desulfitobacterium hafniense DCB-2]
Length = 255
Score = 40.6 bits (92), Expect = 0.89, Method: Composition-based stats.
Identities = 24/246 (9%), Positives = 55/246 (22%), Gaps = 34/246 (13%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ---------------------E 63
LS + V + + + + + +
Sbjct: 1 MAALILSGCASQNYPENVVAVINGETITQEEIDEAINEGKLHIDLTEALRLLNGENSMSQ 60
Query: 64 LGMISQKIG---FVVNSERARSVGLDKK----------ILDNLVSGATLDQFIEDIGLEA 110
+ Q G + S + R ++ L++L+ L Q G EA
Sbjct: 61 RDAMLQAFGVDEGNMTSGQKRFFEGIERSSAKIPTANDALNSLLVEEVLYQEAVKQGHEA 120
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
RV + S + + + Y + M
Sbjct: 121 SIDRVKQILEESKRINLEAMSQDEEALREYNEYVEKTASIYHQYGFTSEEDYLSKRMDRT 180
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
+ ++ ++ A D +L++ K ++
Sbjct: 181 AQAMAINTMNYEFDKVMADKLPGVDSAQIERGNAWEDYGEYLLSKAKVKILKPEYQIQHY 240
Query: 231 RISYIL 236
S+
Sbjct: 241 GESWSH 246
>gi|226323667|ref|ZP_03799185.1| hypothetical protein COPCOM_01442 [Coprococcus comes ATCC 27758]
gi|225207851|gb|EEG90205.1| hypothetical protein COPCOM_01442 [Coprococcus comes ATCC 27758]
Length = 347
Score = 40.6 bits (92), Expect = 0.89, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 13/125 (10%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP-----------FSSFINSWKQELG 65
+ + I L+ +G TVV VG +KV + F ++ LG
Sbjct: 5 VVACILAVACIASLNGCGSKFNGQDTVVEVGDEKVTADVANFFARYQQAQFETTYSSYLG 64
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
G V + I+D+L LD+ +D + + F
Sbjct: 65 D--DFWGKEVTDGKTYEENYKDSIMDSLEEMYILDEHKDDYKVSLSDDEEKSIEDAAKKF 122
Query: 126 HGKDN 130
++
Sbjct: 123 TDSND 127
>gi|312143970|ref|YP_003995416.1| Tetratricopeptide TPR_1 repeat-containing protein [Halanaerobium
sp. 'sapolanicus']
gi|311904621|gb|ADQ15062.1| Tetratricopeptide TPR_1 repeat-containing protein [Halanaerobium
sp. 'sapolanicus']
Length = 404
Score = 40.6 bits (92), Expect = 0.91, Method: Composition-based stats.
Identities = 10/72 (13%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
+ + V ++ F + +Q+ ++S S +ILD+++
Sbjct: 46 TSENPGVIAEVNNHEISEEEFFSVLQQQAPQ------RALSSSEIISF--RYEILDSIIE 97
Query: 96 GATLDQFIEDIG 107
+ + +DI
Sbjct: 98 RHLILEKADDIN 109
>gi|260576192|ref|ZP_05844185.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sp. SW2]
gi|259021672|gb|EEW24975.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodobacter sp. SW2]
Length = 285
Score = 40.2 bits (91), Expect = 0.92, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 13/95 (13%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K ++ W + ++ L + V +V + M
Sbjct: 3 KFAKFWPTVALGAACAFGMALPVSAEDLT---AETVVATVNGTNITLG----------HM 49
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
I + G L K ILD L+ + L+Q
Sbjct: 50 IVLRDGLPAQYSDLPDDVLFKGILDQLIQQSALEQ 84
>gi|237753051|ref|ZP_04583531.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229375318|gb|EEO25409.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 284
Score = 40.2 bits (91), Expect = 0.93, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 27/152 (17%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K+ + + + + +L S V V + ++E
Sbjct: 7 KVLITSIILSVSAVSAAPSLVSG----IAFFVNGDPVTLVELYKTQQREKVS-------- 54
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+D L++ ++ I+ L + + EI R K NK +
Sbjct: 55 -----------QDVAVDRLINERLHEEEIKKRKLSVNDLEIEDEIRRV----AKQNKTTL 99
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+ + G N Y + K + + +
Sbjct: 100 EKVRKYVEGNGGNWNTYKEDIKKEILKRKLYQ 131
>gi|224824910|ref|ZP_03698016.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
2002]
gi|224602581|gb|EEG08758.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
2002]
Length = 244
Score = 40.2 bits (91), Expect = 0.93, Method: Composition-based stats.
Identities = 11/135 (8%), Positives = 40/135 (29%), Gaps = 4/135 (2%)
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFG 545
+ + + ++A ++ + + F ++ + + + +
Sbjct: 99 ILLQVTERTPIQPLLARAEAILHQAQADASRFAELAREMSNCPSAQVGGSLGQLQRGDTV 158
Query: 546 YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLL-- 603
+ + +F+ V + + + KV + G + + + + + L
Sbjct: 159 PEFEAVLFADGSVGVLPRVVRTRYGFHIVKVERREPGKLLPLEMARDRVASDLAEQSLSR 218
Query: 604 --DSVIAYLKSQYSV 616
+ L S V
Sbjct: 219 SLQQYLERLASNAEV 233
>gi|188995416|ref|YP_001929668.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
gingivalis ATCC 33277]
gi|188595096|dbj|BAG34071.1| putative peptidyl-prolyl cis-trans isomerase [Porphyromonas
gingivalis ATCC 33277]
Length = 460
Score = 40.2 bits (91), Expect = 0.93, Method: Composition-based stats.
Identities = 16/191 (8%), Positives = 43/191 (22%), Gaps = 11/191 (5%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+ ++ + L W L V VG + + S + G +
Sbjct: 8 ICIIMLSLLFWALPSMGQKNVIDEVVWMVGDEPILRSDIEAT-----KRFLLSSGRPL-- 60
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
D I + + + +E + V + + + +
Sbjct: 61 ----EGNADCYIPEQIAVQKLFLNQAKIDSIEVNEADVNRYVDMYLADYIQQFGSKEKME 116
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ +E + ++ + + Q ++
Sbjct: 117 EYFNRKYTQIREEQRVEVRNSEIVRMMRKKIDENVKVTPSEIRQYFASLPQDSLPYIPTT 176
Query: 198 NNRHVPAIADP 208
+ AI
Sbjct: 177 VEVQLLAIKPV 187
>gi|170739823|ref|YP_001768478.1| hypothetical protein M446_1543 [Methylobacterium sp. 4-46]
gi|168194097|gb|ACA16044.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
Length = 303
Score = 40.2 bits (91), Expect = 0.94, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLT-- 595
+ FG F+ PV P+E+ + V++ G ++ D+ + ++
Sbjct: 199 QALSSLFGPAFARAAFALPVGSW-SGPVESAYGTHLVLVSSRAQGALRGYDEVRNLVSED 257
Query: 596 --QMMNKDLLDSVIAYLKSQYSV 616
+ ++L D+ + L+ +Y V
Sbjct: 258 WHRAKERELKDAYLGRLRDKYGV 280
>gi|56697307|ref|YP_167673.1| peptidyl-prolyl cis-trans isomerase domain-containing protein
[Ruegeria pomeroyi DSS-3]
gi|56679044|gb|AAV95710.1| PPIC-type PPIASE domain [Ruegeria pomeroyi DSS-3]
Length = 412
Score = 40.2 bits (91), Expect = 0.94, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 19/148 (12%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+ + + G + + S S + V + + + + + +
Sbjct: 16 MGAAALTLTLAG--GPVAAQSLFSPAIRVNQGVITHFELEQRI-----RLMEVLRIPGDP 68
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
+ K +L+ A Q +E+ G+E V I + S D F
Sbjct: 69 Q--------KDARRSLIEEALKMQAVEEAGIEVAPEDVQLGIDDFAA----RARLSTDEF 116
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVV 165
++ LA EG++ + D +K ++ D V
Sbjct: 117 LAALANEGVSAETVRDFVSKQMAWRDYV 144
Score = 40.2 bits (91), Expect = 0.99, Method: Composition-based stats.
Identities = 24/233 (10%), Positives = 63/233 (27%), Gaps = 12/233 (5%)
Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE-QLLFRVFGKDD 448
+ + + + S V A G + IP + + +
Sbjct: 185 QTVDQVDEVAQQIAALTSYEAFSSAAIQVSAAETRENGGRMPWIPLAQLPPALQPVILEL 244
Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL-TDVKKDWKTVKTAEEVSSKANQLV 507
+ + Q++ A ++ E + KA +
Sbjct: 245 EPGEISDPITLPNAVALFQMRGLREAAVGTPRYAAIDYAAYRMAGGRSPETL--KAATEL 302
Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
+ + + K A + + R+ + D ++ N
Sbjct: 303 RQRVDTCDDLYGVAKGQPAEV-----LERISAKPAEIPQDIALELAKLDPGETSLALTRN 357
Query: 568 GLS---YVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+++ +G ++ + LTQ + L +S++ L++ +T
Sbjct: 358 NGQTLLFLMMCTRTRDLGGDASREDVANALTQQRLQTLAESLVEQLRADAIIT 410
>gi|160882392|ref|ZP_02063395.1| hypothetical protein BACOVA_00341 [Bacteroides ovatus ATCC 8483]
gi|237719065|ref|ZP_04549546.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
gi|260172001|ref|ZP_05758413.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D2]
gi|293369504|ref|ZP_06616083.1| PPIC-type PPIASE domain protein [Bacteroides ovatus SD CMC 3f]
gi|299148148|ref|ZP_07041210.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
3_1_23]
gi|315920314|ref|ZP_07916554.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156112205|gb|EDO13950.1| hypothetical protein BACOVA_00341 [Bacteroides ovatus ATCC 8483]
gi|229451444|gb|EEO57235.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_2_4]
gi|292635389|gb|EFF53902.1| PPIC-type PPIASE domain protein [Bacteroides ovatus SD CMC 3f]
gi|298512909|gb|EFI36796.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
3_1_23]
gi|313694189|gb|EFS31024.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 460
Score = 40.2 bits (91), Expect = 0.95, Method: Composition-based stats.
Identities = 30/291 (10%), Positives = 71/291 (24%), Gaps = 27/291 (9%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ + + ++ K ED KR + EI
Sbjct: 161 RYFKDLPQDSIPYIPTQVEVQIITLQPKIPVSEIEDVKRTLRDYTDRVTKGEIDFSTLAR 220
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
G + F DP V G ++ I++
Sbjct: 221 LYSEDKASAIKGGECGFMGRGM-MDPAYANVAFSLQDPKKVSKIVESEFGFHIIQLIEKR 279
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG------ 525
+ + + V + K E ++ + + + F D +
Sbjct: 280 GDRVNTRHILLRPKV-----SEKELTEACARLDSIADDIRANKFTFDDAAAVISQDKDTR 334
Query: 526 ------ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-----PIENGLSYVVF 574
++ + I + + D V V + + +
Sbjct: 335 NNHGIMVNINEHSGITTSKFQMQDLPQDVAKVVDKMNVGEISKAFTMINEKDGKEVCAIV 394
Query: 575 KVTNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K+ K ++ + +++L I + V +++N
Sbjct: 395 KLKTKINGHKATIAEDYQDLKEIVMDKRREEVLQKWILNKQKHTYVRINEN 445
>gi|313499615|gb|ADR60981.1| Tig [Pseudomonas putida BIRD-1]
Length = 437
Score = 40.2 bits (91), Expect = 0.97, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + E+ +++ +V G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPEQLPVELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D +V I + + + + + + +
Sbjct: 358 ELKPDDAKVREMIEEMASAYQEPEQVIAWYYKNDQQLNEVRSVVLEEQ 405
>gi|91779927|ref|YP_555135.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
[Burkholderia xenovorans LB400]
gi|91692587|gb|ABE35785.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
[Burkholderia xenovorans LB400]
Length = 313
Score = 40.2 bits (91), Expect = 0.97, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 18/83 (21%), Gaps = 15/83 (18%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V + + + L I + L++ Q
Sbjct: 68 VVARVNNISITQDQVDQIVH--------------TTNAPDTPALRANIKEQLIARELFRQ 113
Query: 102 FIEDIGLEADHGRVWGEIARSPL 124
E A V I ++
Sbjct: 114 AAEKDHY-ATKPEVQAAIDQAKN 135
>gi|82701375|ref|YP_410941.1| hypothetical protein Nmul_A0241 [Nitrosospira multiformis ATCC
25196]
gi|82409440|gb|ABB73549.1| hypothetical protein Nmul_A0241 [Nitrosospira multiformis ATCC
25196]
Length = 330
Score = 40.2 bits (91), Expect = 0.98, Method: Composition-based stats.
Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 8/81 (9%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLV 94
S S V ++ + + + E A + +++LD LV
Sbjct: 36 SSQPASQVAAKVNSGEISVHQLNYVLARATRNSAN------SPENASR--IRREVLDRLV 87
Query: 95 SGATLDQFIEDIGLEADHGRV 115
+ + L+ +
Sbjct: 88 DQELAVEQAINKKLDRSPEVL 108
>gi|229161287|ref|ZP_04289272.1| Foldase protein prsA 1 [Bacillus cereus R309803]
gi|228622101|gb|EEK78942.1| Foldase protein prsA 1 [Bacillus cereus R309803]
Length = 256
Score = 40.2 bits (91), Expect = 0.99, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 9/151 (5%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 96 TEKDVKENYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 154
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV------QEKDKF 590
+ + V PI+ Y + K T+ K + +
Sbjct: 155 PGFAPGQTVKEFEEAAYKLDAGQV-SEPIKTTYGYHIIKATDKKELKPFDEVKGEIRKDL 213
Query: 591 ISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
Q V+ L + V+D
Sbjct: 214 EEQRLQDTTGKWKQQVVTDLLKAADIKVNDK 244
>gi|147678019|ref|YP_001212234.1| ABC-type sugar transport system, periplasmic component
[Pelotomaculum thermopropionicum SI]
gi|146274116|dbj|BAF59865.1| ABC-type sugar transport system, periplasmic component
[Pelotomaculum thermopropionicum SI]
Length = 386
Score = 40.2 bits (91), Expect = 1.00, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 40/113 (35%), Gaps = 17/113 (15%)
Query: 1 MLEIIRKASRTWV------AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP-- 52
M +++ + +I +V L FL+ G + +++
Sbjct: 1 MFNALQRKRKGNFSVTTKHLRIVIVALLAVFLLSGCASKQAGQKTPEQAG--NGKQITFG 58
Query: 53 ------FSSFINSWKQELGMISQKIGFVVNSERARSVGLD-KKILDNLVSGAT 98
+ F+ ++ ++++G V+ + ++ L +++DN +
Sbjct: 59 MIVKEPTAPFVQAFINGAEQKAKELGVKVDIKDGQADSLKIMELMDNFIVQKV 111
>gi|317009325|gb|ADU79905.1| hypothetical protein HPIN_03345 [Helicobacter pylori India7]
Length = 411
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 172 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 227
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 228 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 286
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 287 IPTEIETVRYTSTNQEDLERAMSNPNLEVPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 346
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 347 TPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 399
>gi|218778291|ref|YP_002429609.1| hypothetical protein Dalk_0433 [Desulfatibacillum alkenivorans
AK-01]
gi|218759675|gb|ACL02141.1| hypothetical protein Dalk_0433 [Desulfatibacillum alkenivorans
AK-01]
Length = 192
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 21/168 (12%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVV-SVGRQKVPFSSFINSWKQELGMISQKIGF 73
K+ L ++ I+ +S A VV V + F + QE+
Sbjct: 3 KVLLCLITAAVCIYVVSCASEEQPDQGPVVLRVNDYCLCQKEFRDLLAQEMR-------- 54
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
++ ++ K+ L +LV+ L Q + + E+ P F +F
Sbjct: 55 -LDEHYKLTLDAQKQFLGDLVARQVLIQEAKRL-----------ELDSRPGFVLSVQRFW 102
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQ 181
+ L E E T+ +
Sbjct: 103 ESTLIRDLMDMKAREIEANTLVTQEEVLDLYRKQKQDDPYLPAFEDMR 150
>gi|15603073|ref|NP_246145.1| hypothetical protein PM1208 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721561|gb|AAK03292.1| SurA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 311
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 37/123 (30%), Gaps = 3/123 (2%)
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ ++ Q+ + +F D + L+ + +
Sbjct: 186 QAKAQLTQIRADIIAGKMSFADAALHYSKDYLSGANGGSLGFAFPEAYVGAFQKAILTTK 245
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQ---EKDKFISYLTQMMNKDLLDSVIAYLKSQY 614
+ V P + + + +VTN++ G + K L KD+ + L+
Sbjct: 246 KGVISAPFKTEFGWHILEVTNTREGDKTIDVYRQKAYEQLVNQQVKDVEKDWVKALRKNA 305
Query: 615 SVT 617
+
Sbjct: 306 EIR 308
Score = 38.7 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 20/170 (11%), Positives = 52/170 (30%), Gaps = 36/170 (21%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
M+++I ++ L + + + V +V V S +
Sbjct: 1 MMKMI--NVKSIF-WAILGLFI---------YVSTAQAAERVVATVNGVPVLESQVKKNM 48
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
++ + LD ++ + Q I++ G++ ++ +V I
Sbjct: 49 GKKGQY--------------------QVALDKVIDDILVQQAIQNSGIKVNYAQVDQIIE 88
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
N ++ + L +GI+ Y + ++ +G
Sbjct: 89 GIAA----QNGLTYGQLLDALDYQGISYNAYRQQIANQILMGEIRNQAIG 134
>gi|148548678|ref|YP_001268780.1| trigger factor [Pseudomonas putida F1]
gi|166229921|sp|A5W636|TIG_PSEP1 RecName: Full=Trigger factor; Short=TF
gi|148512736|gb|ABQ79596.1| trigger factor [Pseudomonas putida F1]
Length = 437
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + E+ +++ +V G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPEQLPVELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D +V I + + + + + + +
Sbjct: 358 ELKPDDAKVREMIEEMASAYQEPEQVIAWYYKNDQQLNEVRSVVLEEQ 405
>gi|118574081|sp|Q88KJ1|TIG_PSEPK RecName: Full=Trigger factor; Short=TF
Length = 437
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + E+ +++ +V G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPEQLPVELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D +V I + + + + + + +
Sbjct: 358 ELKPDDAKVREMIEEMASAYQEPEQVIAWYYKNDQQLNEVRSVVLEEQ 405
>gi|294669050|ref|ZP_06734136.1| putative PPIC-type PPIASE domain protein [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309042|gb|EFE50285.1| putative PPIC-type PPIASE domain protein [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 291
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 31/209 (14%), Positives = 63/209 (30%), Gaps = 25/209 (11%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
FL + + T+++V K+ K N + S
Sbjct: 6 FLPALIMALFSGSLMAETLLTVNGNKIDSGEIDRQIKLIRQD---------NPQIPDSPE 56
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
L ++L N V+ ++Q + LE G++ K + + +
Sbjct: 57 LRNQLLSNTVTRMLVNQEARRLKLE----------------QGQEFKTASENARKSAKEQ 100
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
G ++ ++ FV + +N + DQ R ++ Y + +
Sbjct: 101 GADKHADFKQQWDDYQAALLIQAFVSHIIKTNPISDQEIRRAYDESRKYYQGSSEVQLGE 160
Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
I P+ A Q + K + R
Sbjct: 161 ILTPNKADAEQAIKDLKAKKPFTDTARKY 189
>gi|222824289|ref|YP_002575863.1| hypothetical protein Cla_1294 [Campylobacter lari RM2100]
gi|222539510|gb|ACM64611.1| conserved hypothetical protein [Campylobacter lari RM2100]
Length = 275
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 20/189 (10%), Positives = 57/189 (30%), Gaps = 26/189 (13%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ F ++ L++ + + V Q + + K+
Sbjct: 5 LISCCFA----ANVLYAQTLGGVAMIVENQPITLYDIEQTMKEL---------------- 44
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
+K + LV + +G+ + ++ + KDNK + +
Sbjct: 45 --KTNDKQKAIAFLVDDKIQQSEAKKLGIYVSTFELNEKLDQI----AKDNKTDINGLQA 98
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
R+ ++G++ + + + K L R + + + + + +
Sbjct: 99 RMEKDGLSFEVFKNKVRKNLEREKLYRSIMQNAKINIDDETLKHFYESNLDKFSTFSNID 158
Query: 200 RHVPAIADP 208
V +P
Sbjct: 159 LVVYNSTNP 167
>gi|323490390|ref|ZP_08095605.1| foldase protein PrsA [Planococcus donghaensis MPA1U2]
gi|323396060|gb|EGA88891.1| foldase protein PrsA [Planococcus donghaensis MPA1U2]
Length = 288
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 34/109 (31%), Gaps = 26/109 (23%)
Query: 12 WVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKI 71
+ I + VL + L + +G TV VG +++ + G
Sbjct: 3 KMIYISIGVLAATAIF-----ILAAFNGDETVAKVGDKEITKEALYEKLVATSGA----- 52
Query: 72 GFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
LD ++S ++Q E +E + E+A
Sbjct: 53 ----------------ATLDAMISNEVVNQEAEKAEVEVTQEEIDAEMA 85
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 16/156 (10%), Positives = 46/156 (29%), Gaps = 7/156 (4%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
++I + + + + + E +A+++ + +G +F ++
Sbjct: 129 IEITDEQISTYFEENKETFAQASKVEANHILVETQEEADEVKAKLD-DGDDFAELAAEYS 187
Query: 526 ASLLTTN-QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
+ + FS V+ + P+E + + +VT
Sbjct: 188 VDTSNAEDGGALGEFGAGEMTPEFEEAAFSLKVDEI-SDPVETDYGFHIIQVTGKTEATE 246
Query: 585 ----QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSV 616
K++ L + +A Y++
Sbjct: 247 ANLEDSKEQIKETLFDEALNTQYAAWLAEKTESYNI 282
>gi|307730260|ref|YP_003907484.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1003]
gi|307584795|gb|ADN58193.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1003]
Length = 304
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 9/84 (10%), Positives = 24/84 (28%), Gaps = 15/84 (17%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V V + + ++ + S + L I + +++
Sbjct: 57 NAVARVNNVVITQAQLDDAVR--------------ASNAPDTPTLRASIKNQMIARELFR 102
Query: 101 QFIEDIGLEADHGRVWGEIARSPL 124
Q E E +V + ++
Sbjct: 103 QAAEKQHYE-SRPQVVAAVEQAKS 125
>gi|237803597|ref|ZP_04591182.1| trigger factor [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331025579|gb|EGI05635.1| trigger factor [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 436
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP S N + Q+ G + ++ + +++ + G + + ++
Sbjct: 298 NPIEVPKSLLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDDARVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 405
>gi|94969502|ref|YP_591550.1| hypothetical protein Acid345_2475 [Candidatus Koribacter versatilis
Ellin345]
gi|94551552|gb|ABF41476.1| hypothetical protein Acid345_2475 [Candidatus Koribacter versatilis
Ellin345]
Length = 234
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 25/216 (11%), Positives = 61/216 (28%), Gaps = 10/216 (4%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V SV + S + + E ++ +++L +LV +
Sbjct: 28 DRLVASVDSTPILQSDWDEAVAFEALQ-QGRLISSFTEND------RREVLQHLVDQRLI 80
Query: 100 DQFIEDIGLEADHG-RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
I D + A + + + + + + + S L G++++ T
Sbjct: 81 QAQIGDSQIAAAEEREITKSLDDLRKLYPQAT--TDEAWRSLLQTYGLDQETVRRKTTAQ 138
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L + + + ++ V + ++ +L Q
Sbjct: 139 LEALRFINLRLRPESRIARADVESYYKNNYVPEVQKRGEKPEELTVVSPKIEEILRQQRM 198
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
E + I + V + +N E+Q
Sbjct: 199 ATLLTNWLQELHNHADIRWIVPSAAPAAQAANREVQ 234
>gi|328948669|ref|YP_004366006.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Treponema
succinifaciens DSM 2489]
gi|328448993|gb|AEB14709.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Treponema
succinifaciens DSM 2489]
Length = 505
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 40/139 (28%), Gaps = 7/139 (5%)
Query: 7 KASRTWVAKIFL----VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
K + + + + ++F+PF + ++F+ +ST S + + + +
Sbjct: 13 KKDSSKIGAVIILVISALVFLPFGASAVFQSIFNKQKASTFGSYNGKNITYEPGTKFFIT 72
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+ + + ++ V ++ G V +
Sbjct: 73 VSNLAQSYQAGGYKVDENSYYRIMREAFYQTVINMAFTDSVKKSGYIVPKEAVNRFV--I 130
Query: 123 PLFHGKDN-KFSHDVFVSR 140
F KFS +
Sbjct: 131 ESFTDPSTGKFSQKAYNQT 149
>gi|37993071|gb|AAP97044.1| putative peptidylprolyl isomerase [Lactobacillus reuteri DSM 20016]
Length = 128
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 46/152 (30%), Gaps = 40/152 (26%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
S+ +A I V L +P G + V + K+ S + +S KQ
Sbjct: 2 KSKKLIAIIAGVALMMPLAACG----------NKAVATTSGGKITESEYYSSMKQTSAG- 50
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
K++L ++ L+ + G E +V + +G
Sbjct: 51 -------------------KQVLQQMILDKVLE---KQYGKEVSDKQVNAQYNTYKNEYG 88
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
D F + L + + EK L
Sbjct: 89 SD-------FNAYLQSQNLTEKSLKQQIRSNL 113
>gi|26989023|ref|NP_744448.1| trigger factor [Pseudomonas putida KT2440]
gi|24983846|gb|AAN67912.1|AE016423_7 trigger factor [Pseudomonas putida KT2440]
Length = 443
Score = 40.2 bits (91), Expect = 1.0, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + E+ +++ +V G + + ++
Sbjct: 304 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPEQLPVELFEEQAKRRVVLGLIVAEVVKQF 363
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D +V I + + + + + + +
Sbjct: 364 ELKPDDAKVREMIEEMASAYQEPEQVIAWYYKNDQQLNEVRSVVLEEQ 411
>gi|163781565|ref|ZP_02176565.1| hypothetical protein HG1285_01743 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882785|gb|EDP76289.1| hypothetical protein HG1285_01743 [Hydrogenivirga sp. 128-5-R1-1]
Length = 289
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 18/84 (21%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V +V + + S + + V K+++ L+ +
Sbjct: 35 DRVVANVNGEPILESELKVA------------------QMFYGVKDRDKLIELLIQKHLI 76
Query: 100 DQFIEDIGLEADHGRVWGEIARSP 123
QF+ D GL+ G V I
Sbjct: 77 AQFLRDNGLKVPEGYVDTLIEDIA 100
>gi|58038776|ref|YP_190740.1| peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H]
gi|58001190|gb|AAW60084.1| Peptidyl-prolyl cis-trans isomerase [Gluconobacter oxydans 621H]
Length = 387
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 6/149 (4%)
Query: 60 WKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
+ G ++ E + +I+ L+ Q I + + + ++ G I
Sbjct: 1 MDNRAKLFVLSTGLPISPEIMNR--MRGQIIHQLIDERLKTQEILKLHINVEPDQIAGAI 58
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
+ + N + RLA +G++ ID + V+ +G
Sbjct: 59 SNIE----QRNGMPKNALRDRLASDGVSLTTLIDQIRVQIGWMQVLREKLGEEGRVTATQ 114
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADP 208
+ + + +ADP
Sbjct: 115 ISQREQALQAEQGRPQYFMSEIFVPVADP 143
>gi|291320289|ref|YP_003515551.1| hypothetical protein MAGa3820 [Mycoplasma agalactiae]
gi|290752622|emb|CBH40595.1| Hypothetical protein, predicted lipoprotein [Mycoplasma agalactiae]
Length = 514
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 30/343 (8%), Positives = 87/343 (25%), Gaps = 2/343 (0%)
Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
++ + A +W + + + + + ++ E
Sbjct: 137 ENTMDLLEALKEAEDERKLNTPIEEANYKEWARQDAFRRKRNKEFKERKLGYEFFEFLSP 196
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
N+E + ++ + ++ +P Q + + + + K +
Sbjct: 197 NWAHNEEHEKQWAEWEKIVNTPLEEKAYQ-KWLLDQWYKQRAEKDFKETPISGEYLDFIS 255
Query: 306 SLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQ 365
L+ + + + D A + + F + +T +
Sbjct: 256 PLNAADIRAEIEAEFKDPEFKKLDGEAATERITNAPVEEEFYRAWQGAEEERIYWTKLEE 315
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
E + ++ K K + ++ ++ +
Sbjct: 316 EFYDEKEAEILADKEMATNTIKEKEFFDEKLAEIDAEKEMMINTVIETENYEDWLNFPKT 375
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
+ + + F + + V D K A + +D
Sbjct: 376 LEEAIIEEYHNSPYEKAYFDSELERLTNTPVEYEDYEDWLEFPKAFAEANAEYEKFAKSD 435
Query: 486 VKKDWKTVKTAEEVSSKANQLVLEYSKEGKN-FRDIGKNLGAS 527
K W+ + A E K + + + K ++ + G S
Sbjct: 436 ETKKWEKAEKAAEFKKKYDVDLEKLEKNSESVLDNSAAANGIS 478
>gi|78063929|ref|YP_373837.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
383]
gi|77971814|gb|ABB13193.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
383]
Length = 236
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 23/201 (11%), Positives = 51/201 (25%), Gaps = 20/201 (9%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL----TDVKKDWKT 492
+Q + D P K + + + +++++ E+V V K
Sbjct: 35 QQAAEKANYADKPEVKAAVQQAKANAEVQLYLRDNVKPEPVTEEQVKARYDELVATLGKN 94
Query: 493 VKTAEEVSSK---ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ-----INRMDNEN--- 541
+ + VL K GK+F + + + ++
Sbjct: 95 EYKPRLIIVQDPVTAATVLSELKAGKSFEGLARQYSMAPSRDTGGELPWVSFHTPVTEGK 154
Query: 542 -KFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
+ V I + K+ + V L Q +
Sbjct: 155 TSGLPLPIAQALEKLKVGAATSDSIPVDGVRAIVKLDAKRPTQVPGFATAKPGLQQQLQA 214
Query: 601 DLLD----SVIAYLKSQYSVT 617
++ +I L +T
Sbjct: 215 AAVEKASAQMIGNLLKDAKIT 235
>gi|257459731|ref|ZP_05624840.1| foldase protein PrsA 2 [Campylobacter gracilis RM3268]
gi|257443156|gb|EEV18290.1| foldase protein PrsA 2 [Campylobacter gracilis RM3268]
Length = 274
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 89/236 (37%), Gaps = 11/236 (4%)
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ + L + E + + L + + + A + + ++
Sbjct: 33 ITDEDVAPFLAQGMQHGGQEPTADEKKKLIDDLIKYKLLIAEAKKSGIENSDEYKHQLEL 92
Query: 229 YKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQ 288
K E+ K + +S++E + Y++NK+ + P+ T ++ ++K A A
Sbjct: 93 AKDGIAFNLWQREQAKDVSVSDEEAKKIYDENKQNFMQPDSVTASHILVADEKAAKNAIA 152
Query: 289 S----------LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+ K +++ + + LGSF K + + F+L
Sbjct: 153 KLSKVKKENLKEEFNKLAKEISIDPSAKENGGDLGSFGKGMMV-PEFEKAAFALKDGEMS 211
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ FGY + + + K + T+ F++VK I NQ+ +K ++K+ + L
Sbjct: 212 KTPVKTQFGYHVIYKESSKKAETMPFEKVKDLIKNQLLPSKVNKKIDDKANELFGK 267
Score = 38.3 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 10/92 (10%)
Query: 22 FVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERAR 81
+ F ++ S + + + + + L Q G ++
Sbjct: 4 ILSFSF--VAAMAISSLNAGVLATAKDANITITD--EDVAPFLAQGMQHGGQEPTADE-- 57
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
KK++D+L+ L + G+E
Sbjct: 58 ----KKKLIDDLIKYKLLIAEAKKSGIENSDE 85
>gi|312129915|ref|YP_003997255.1| ppic-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
byssophila DSM 17132]
gi|311906461|gb|ADQ16902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Leadbetterella
byssophila DSM 17132]
Length = 768
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 59/596 (9%), Positives = 159/596 (26%), Gaps = 43/596 (7%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQK---------VPFSSFINSWKQEL 64
KI + L PFL++ + + S +V + + + +
Sbjct: 3 FKIKYIPLLSPFLLFSCAKPTTTSDKSQVLVVKEEEPKVVELASGGITRKELSIDLENMV 62
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG-------RVWG 117
+ G ++IL L+ G++ +
Sbjct: 63 KL---------------DSGSHEEILQELLQRKLFIAEARSQGMDTTENFREQIQSHLSL 107
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+A + H + K ++ + L ++ + +
Sbjct: 108 AVASALEDHSEIRKLENEAYERYLKE-VNASHLFVPISPYAAPADTLKLYNELLQIRNMA 166
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ ++ + S D ++ V YK + + +
Sbjct: 167 IQNKDFETQAKRWSKDPKTASSGGQLGWFSVFYLVYPLESAVYKVPKDSISLPVRTPAGY 226
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + + S ++ K+ PE E L E L
Sbjct: 227 HLIKVNDIRKSSGM----VQIQHIFKHIGPESEDKETLRKQLDSLRTEILNGLPFETAVE 282
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
Q +++ + L F + +++ KKG+ + I S G + V +
Sbjct: 283 QHSDDFNSKPNKGILQPFGVGKT-EPGFEEAV-FALKKGEISMPIQSSTGLHLVKVIDRL 340
Query: 358 PS--FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+ ++ + I R K D++ ++D + + +
Sbjct: 341 KPLTRSQFIEQNRAKITTDSRGEYLRLKQINDFRAKNNVSFSDEALDNALKFASVRILTR 400
Query: 416 PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPAR 475
+ + + + +D + + + + + A
Sbjct: 401 NWQKPNTVLLTDPLLKINEHTITIGSFYDFVEDKQEFEKWPSENPNEIFKMLFDKFVEAE 460
Query: 476 DRKLEEVLT-DVKKDWKTVKTAEEVSSKANQLVLE--YSKEGKNFRDIGKNLGASLLTTN 532
K ++ T D + A+E + + K ++ + + A+
Sbjct: 461 IVKYQQAQTYQQDPDLQRWMKAQEENILYTEFYTRNILEKSLQDTVALKRFYDANKSLFP 520
Query: 533 QINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKD 588
+ + F + F K + + G++ ++++ + V ++
Sbjct: 521 VVETGNLSVMSFADEETYAKFKAMAAEPKPYKLYRGIAPILYEQNTYTLSEVDQRK 576
>gi|323339608|ref|ZP_08079882.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus ruminis ATCC
25644]
gi|323093003|gb|EFZ35601.1| peptidyl-prolyl cis-trans isomerase [Lactobacillus ruminis ATCC
25644]
Length = 304
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 26/274 (9%), Positives = 72/274 (26%), Gaps = 40/274 (14%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ W V++ + G S TV + KV S + +S K+
Sbjct: 6 NMKKWFVAAASVLMTLSLAACG----------SKTVATTSGGKVTESEYYSSLKKTSSG- 54
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
K++L ++ LD ++ G + +V E + +G
Sbjct: 55 -------------------KQVLQEMILNKILD---KEYGDKVTDKKVDAEYNKYKKQYG 92
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
F + LA+ + + + L + + +
Sbjct: 93 SS-------FSTVLAQNNYTKSSFKKNIRSSLLLHEALVANTKITDKMLEAQWKEYEPKI 145
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
+ ++ + + + K+ K L + ++
Sbjct: 146 TVAHILVAKKSDAEAIINELKKDGSYKNFAKLAKEKSTDTGTKSNGGKLSAFDNTDTSLD 205
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ + + ++ + +++ +
Sbjct: 206 STFKKAAFKLKQGTFTTEPVKTSYGYHIIYSVKN 239
>gi|207093124|ref|ZP_03240911.1| hypothetical protein HpylHP_10109 [Helicobacter pylori
HPKX_438_AG0C1]
Length = 331
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 5/233 (2%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ +S + D L++ +Q IE + + D ++ E+A G
Sbjct: 92 QIQEEQEKSKVSKAQARDRLIAERIKNQEIERLKIHVDDDKLDQEMAMMAQQQG----MD 147
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F L EG + K Y D + L +++ + ++ + +
Sbjct: 148 LDHFKQMLMAEG-HYKLYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 206
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + + + ++I + + I
Sbjct: 207 IPTEIETVRYTSTNQEDLERAMADPNLEIPGVSKANEKIEMKTLNPQIAQVFISHEQGSF 266
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
++ + I+ + + +A + + ++ EE +
Sbjct: 267 TPVMNGGGGQFITFYIKEKKGKNEVSFSQAKQFIAQKLVEESKDKILEEHFEK 319
>gi|29840067|ref|NP_829173.1| hypothetical protein CCA00302 [Chlamydophila caviae GPIC]
gi|29834415|gb|AAP05051.1| conserved hypothetical protein [Chlamydophila caviae GPIC]
Length = 360
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 16/175 (9%), Positives = 46/175 (26%), Gaps = 11/175 (6%)
Query: 40 SSTVVSVG-RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + V I ++ + + +L++++
Sbjct: 52 DRVLFKIDEDNVVTTLDVIQKLNLLFASSYPQLMDSYPARSQYYTAMWPVVLESVIDEFL 111
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ + ++ D V EI F D+ + + ++ + +
Sbjct: 112 MVADAKTKKIQVDSTTVNEEIEAM---------FGRDLSPLYV-HFDMTPEDVFNVVNRT 161
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
L V+GM V + + + Y + ++ + L
Sbjct: 162 LIAQRVMGMMVRSKVMLKVTPGKIREHYNQLAEDAANTTVWKYRVVTIKAATESL 216
>gi|206562085|ref|YP_002232848.1| putative peptidylprolyl isomerase [Burkholderia cenocepacia J2315]
gi|198038125|emb|CAR54073.1| putative peptidylprolyl isomerase [Burkholderia cenocepacia J2315]
Length = 280
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 15/78 (19%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + S + + G V E L + L++ ++Q
Sbjct: 41 AVVNDTPIARSDVDSMIEAT--------GQTVTPE------LRAQAKRELIAQHLVEQAA 86
Query: 104 EDIGLEADHGRVWGEIAR 121
E V + R
Sbjct: 87 EKANYG-SRPEVNRVVMR 103
>gi|327438758|dbj|BAK15123.1| parvulin-like peptidyl-prolyl isomerase [Solibacillus silvestris
StLB046]
Length = 282
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 17/166 (10%), Positives = 55/166 (33%), Gaps = 10/166 (6%)
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ + D ++E+ ++ E A ++ + G++F + K
Sbjct: 117 KDVEVTDEEIEKYYNQASQELNARHILVEDEETAKEIKAKLD-AGEDFAKLAKEFSTDPG 175
Query: 530 T-TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----- 583
+ + + ++ ++ + P+++ + + +VT +
Sbjct: 176 SGAQGGDLGWFTVGTMVPEFNDAAYALEIDEI-SEPVQSEHGFHIIQVTEKRDVKDYGKL 234
Query: 584 VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRYLDG 629
+K++ + ++ +A L + V V D ++ G
Sbjct: 235 EDKKEEIRESIAATKAD--WNTKMAELIKEADVKVKDKDLKDAFSG 278
>gi|312143391|ref|YP_003994837.1| DNA methylase N-4/N-6 domain protein [Halanaerobium sp.
'sapolanicus']
gi|311904042|gb|ADQ14483.1| DNA methylase N-4/N-6 domain protein [Halanaerobium sp.
'sapolanicus']
Length = 982
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 42/459 (9%), Positives = 122/459 (26%), Gaps = 8/459 (1%)
Query: 57 INSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
+ I + + ++ E + V DK++L+ + + E++G++ + +
Sbjct: 31 NQRKDEIEKFIEKDLVQTIDKEMNQLVNKDKELLEEKIEK--IKNEAEELGVDFKDSKKY 88
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+ +++ K Y D+ + R
Sbjct: 89 QKAKEQLNSLSSSTNIDTNIYNDIYNDIYRFFKRYYDNGDFLSKRRYSKDEKYAIPYNGE 148
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ N + V+ EK + +Y +
Sbjct: 149 EVHMHWANKDQYYVKTTEEFDNYSFKNNWVTVNFKVVQAEEEKNNNKSDEDQYFLLKKEN 208
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
+ ++ E K E ++ +K +KY + + + ++ E Q+
Sbjct: 209 YFDYDNENKELNIYFEYRSLTKKENQKYKNRNTQADIRDKTFDKLENKIKKQTKDIYDLG 268
Query: 297 IQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNI 356
+ ++ + S + I + A +
Sbjct: 269 WLIDGDKKANPPLKSQLYKYTTKNKSDYFIHKDLKGFLNRELDFFIKNEIMNIDAIGTED 328
Query: 357 KPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP 416
+ S +V+ +I + +++ K+L E + +K+ +
Sbjct: 329 EKSVDSYLNKVRVIKNVSKKIIEFLAQIENFQKKLFEKKKFVIDDEYCLTLDKVPEVIQD 388
Query: 417 LVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK----ESI 472
+ + K + + + + D ++K + V K +
Sbjct: 389 EIFEEVLNNKKQINEWKVFFNEKIET--KDDLFINKSKLFNERKLKNLVVDTKYFNNDFK 446
Query: 473 PARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS 511
V ++K + + ++ + +
Sbjct: 447 EKLLDSYNNVNDEIKGLMINSENFQTLNLIMEKYKGKVK 485
>gi|294672825|ref|YP_003573441.1| peptidylprolyl isomerase domain-containing protein [Prevotella
ruminicola 23]
gi|294471979|gb|ADE81368.1| peptidylprolyl isomerase domain protein [Prevotella ruminicola 23]
Length = 452
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 38/487 (7%), Positives = 108/487 (22%), Gaps = 79/487 (16%)
Query: 40 SSTVVSVGRQKVPFSSFIN-SWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
V VG + + S + + + +
Sbjct: 25 DEVVWVVGDEAILRSDVEALRMQSAMEGVKWSGNPDCTIPE------------QIAVQKL 72
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ +E V E+ + + + S + +
Sbjct: 73 FKHQAQIDSIEVTDADVAQEVEQQISYWLEMVDGSRERLEEYKHQN-------------- 118
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
L E + + + + + A + ++F
Sbjct: 119 -------------------LTQIRADLREEMKDRQMVQKMKQKLVEDIAVTPAEVRRYFS 159
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
+ + E+Q K + E
Sbjct: 160 ALPQD-------------------SLPFVPTEVEVQIVQLTPKIEQEELNRVKDE----L 196
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+ +E+ G + LG + + D + A F+L
Sbjct: 197 RNYTERVNKGETRFQTLAQLYSEDPGSARRGGELGLMGRGTL-DPAFAAVAFNLTDPKKV 255
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA----SEKVKEDYKRLEEF 394
+ ++ FG+ I + + ++K + +Q + +A + F
Sbjct: 256 SKIVESEFGFHIIQLIEKRGDKVNVRHILRKPVVSQESVDRALGRLDSIAADLRAEKFSF 315
Query: 395 LALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDH 454
+ + + + GK + +P + + +
Sbjct: 316 EDAASLISDDKDTRNAKGLLSTDQMRTGKTSSKFRMQDLPAEIAKAVDTLKVGEISNAFQ 375
Query: 455 TVALPDGSYMWV-----QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLE 509
+ + + + + + + + V + + + V K
Sbjct: 376 MINQRGKTVCVIAKLKSRTEGHKASVTEDFQIMKDVVLNKRREDRIHQWVVDKIKSTYTR 435
Query: 510 YSKEGKN 516
+ + K+
Sbjct: 436 LNDDYKD 442
>gi|167032909|ref|YP_001668140.1| trigger factor [Pseudomonas putida GB-1]
gi|189035948|sp|B0KJG5|TIG_PSEPG RecName: Full=Trigger factor; Short=TF
gi|166859397|gb|ABY97804.1| trigger factor [Pseudomonas putida GB-1]
Length = 437
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + E+ +++ +V G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPEQLPVELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D +V I + + + + + + +
Sbjct: 358 ELKPDDAKVREMIEEMASAYQEPEQVIAWYYKNDQQLNEVRSVVLEEQ 405
>gi|116251332|ref|YP_767170.1| hypothetical protein RL1566 [Rhizobium leguminosarum bv. viciae
3841]
gi|115255980|emb|CAK07061.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 314
Score = 40.2 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 19/164 (11%), Positives = 38/164 (23%), Gaps = 18/164 (10%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + +Q + +E L+ A Q +
Sbjct: 35 AVVNGTAITSGDVAK--RQAFLRLQHTKADAKTAEE------------QLIDEALKRQEV 80
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + V AR NK S + L R G+ + +S
Sbjct: 81 ARVRMSVSQQDVDASFAR----FSSGNKLSPEQMSQILDRAGVGVDHFKGFIAVQMSWPR 136
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
VV G + ++ + + + +
Sbjct: 137 VVNARYGSTSRLSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIP 180
>gi|301612259|ref|XP_002935632.1| PREDICTED: LOW QUALITY PROTEIN: structural maintenance of
chromosomes protein 5-like [Xenopus (Silurana)
tropicalis]
Length = 1068
Score = 40.2 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 37/482 (7%), Positives = 127/482 (26%), Gaps = 16/482 (3%)
Query: 59 SWKQELGMISQKIGF-VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
++ + + + + + L+ + Q D ++ +
Sbjct: 253 EYENVRQQYEEVKKRCNNIKDELKKLQELQAPLNQKIQQIEKRQRAIDEKIKNKAVEIKE 312
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
+ + + ++ + K + + + +
Sbjct: 313 TSRNCKQKQDELEQKDKKIEEV---QQALRMKRDEEQDRQKKIGNIRKMIEDWKKELGTM 369
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
+ + ++ + D + N ++ S+ + + ++ + +A K+ ++
Sbjct: 370 TNQENLQPEMDSITTDLRHIQNEKANIESEMSDLRMERDIQEREKKDKANRIKQFDNLMN 429
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
EK K++ ++NK+++ + + + + + ++
Sbjct: 430 FKEEKLKRMFTDTYNAVVWLKENKDRFKKRVCQPMMLEINMRDQYHAKYVENHISMNDMK 489
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA----HV 353
E + + K+ + ++ A + P+ V ++
Sbjct: 490 AFVFESKEDMEVFLREVRDKQKLRVNTVCSPEEPYATRRPTRPISDLQXVMVWVGFLDYL 549
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
+ + + + K ++E E K
Sbjct: 550 RELFDAPDPVMNYLCYQYNVHDVPVGTEQTRSMIEKVIQETKLRHMYTAEEKYTTKTSVY 609
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
L+ + + E+ + K ++ G Q+ E
Sbjct: 610 SQKLISSNVSLKGAQFLTVTVDAEERRQVEEQLKEIQRKCSSLDASMG-----QLTERQR 664
Query: 474 ARDRKLEE---VLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
DR+ E ++ K E+ S + + ++ N ++ + +
Sbjct: 665 LLDRRDNELRMRKKEISDMKIKKKQLEQRISTKYDSLKQLEQDNLNVEEVEQQAENKIKN 724
Query: 531 TN 532
N
Sbjct: 725 IN 726
>gi|311032843|ref|ZP_07710933.1| hypothetical protein Bm3-1_20284 [Bacillus sp. m3-13]
Length = 180
Score = 40.2 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 9/115 (7%), Positives = 29/115 (25%), Gaps = 22/115 (19%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KIF ++ + + + V + + +
Sbjct: 3 KIFCSIIVIYLIFLSGCSNSPKYNDEDVAAIVKGEDITIGELRFLY-------------- 48
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
E ++ LD + + + + + ++ + I + +D
Sbjct: 49 -PDEEIFNM------LDGTIKAKLVIEEAKKMNIDVS-KEINETIKALEDYPPED 95
>gi|269125278|ref|YP_003298648.1| hypothetical protein Tcur_1024 [Thermomonospora curvata DSM 43183]
gi|268310236|gb|ACY96610.1| hypothetical protein Tcur_1024 [Thermomonospora curvata DSM 43183]
Length = 226
Score = 40.2 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQ------------KIGFVVNSERARSVGLDKKI 89
+ V +G +++ +S + +Q G + + +
Sbjct: 29 SAVIIGDERITTASLDRTVRQWNEQFRADPEANMKRSRTSAPGQQLPLDSVSESEMR-LA 87
Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
L +LV D+ + G++A + RV I +
Sbjct: 88 LSHLVRIRISDRVAREQGIDAGNSRVDRLIEQ 119
>gi|90961451|ref|YP_535367.1| peptidylprolyl isomerase [Lactobacillus salivarius UCC118]
gi|227890540|ref|ZP_04008345.1| peptidylprolyl isomerase [Lactobacillus salivarius ATCC 11741]
gi|122449241|sp|Q1WUQ1|PRSA_LACS1 RecName: Full=Foldase protein prsA; Flags: Precursor
gi|90820645|gb|ABD99284.1| Peptidyl-prolyl cis-trans isomerase [Lactobacillus salivarius
UCC118]
gi|227867478|gb|EEJ74899.1| peptidylprolyl isomerase [Lactobacillus salivarius ATCC 11741]
Length = 296
Score = 40.2 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 22/196 (11%), Positives = 51/196 (26%), Gaps = 30/196 (15%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
I G+ + S TV + K+ S + +S K+
Sbjct: 8 AISGIVLTFGLAACSKTVATTSGGKITESEYYSSMKKTSSG------------------- 48
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
K++L ++ L+ ++ G + +V + +G F S LA+
Sbjct: 49 -KQVLQQMILNKVLE---KEYGSKVSDKKVNEQYNTYKKQYGSS-------FDSVLAQND 97
Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
+ + + L + V + + +
Sbjct: 98 MTKSSFKQEIRSNLLLKEAVKDNTKITNKQLKAQWKEYEPKVTVAHILVSKKSTAEDIIN 157
Query: 206 ADPSNAVLTQWFEKYK 221
+ + + K
Sbjct: 158 KLKEDGSYANFKKLAK 173
>gi|325274288|ref|ZP_08140399.1| trigger factor [Pseudomonas sp. TJI-51]
gi|324100571|gb|EGB98306.1| trigger factor [Pseudomonas sp. TJI-51]
Length = 437
Score = 39.8 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 9/99 (9%), Positives = 32/99 (32%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
N + Q+ G + ++ + +++ +V G + + ++ L+ D +V
Sbjct: 307 LENEINRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVVLGLIVAEVVKQFELKPDDAKV 366
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
I + + + + + + +
Sbjct: 367 REMIEEMASAYQEPEQVIAWYYKNDQQMNEVRSVVLEEQ 405
>gi|269103549|ref|ZP_06156246.1| peptidyl-prolyl cis-trans isomerase SurA [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163447|gb|EEZ41943.1| peptidyl-prolyl cis-trans isomerase SurA [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 357
Score = 39.8 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 4/114 (3%)
Query: 96 GATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHY 155
Q + +G+ D ++ I + K+ S D +LA+ GI+ ++ D
Sbjct: 2 ETLQVQQAKQMGIRIDDSQLEQAIGQI----AKERNMSIDQLRQQLAQYGISFADFRDQI 57
Query: 156 TKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPS 209
+ L ++ V + ++ N + D S
Sbjct: 58 RRDLMASEARTAIVRRRINILPQEVENLAQQLGQQTQQNTEYNISQIQIRVDES 111
Score = 38.3 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 21/236 (8%), Positives = 58/236 (24%), Gaps = 7/236 (2%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
E EE L +++ + K+ G + +F
Sbjct: 116 ERDAAKEEADKLVKDLNDGADFAKLAYTYSKGPKALKGGEWGWMSK---EEMPTIFADQI 172
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD-VKKDWKTVKTAEEVSSKAN 504
K++ Y ++I + + + EV + + + +
Sbjct: 173 KNNGKGAIIGPFRSGVGYHILKINDVKGLQTVSVMEVKARHILLKPSVILSDAGAKQELE 232
Query: 505 QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFP 564
Q+ + + F K + + + + P
Sbjct: 233 QVRQKILSGKETFAQAAKAISQDPGSAANGGELGWQTPDLYVPAFKDKVETLPVDTISQP 292
Query: 565 IENGLSYVVFKVT---NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + + +V N K++ L + + + L++ +
Sbjct: 293 FKTVHGWHIVEVEGRRNVDRTDAALKNRAYRILFNRKFNEEAQTWLQELRASAYID 348
>gi|158605272|gb|ABW74882.1| conserved hypothetical protein [Sphingomonas sp. ATCC 53159]
Length = 290
Score = 39.8 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
V SV +++ + + ++ + + A + L ++ L
Sbjct: 31 QVVASVDGEEITVFELNAELQ------ASQVPPGTDRKLAEQL-----ALQRIIERKILA 79
Query: 101 QFIEDIGLEADHGRVWGE 118
+ + L+ + E
Sbjct: 80 KVAREQKLDKTPAFLIQE 97
>gi|330808571|ref|YP_004353033.1| trigger factor [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327376679|gb|AEA68029.1| trigger factor [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 436
Score = 39.8 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 36/108 (33%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ +V G + + ++
Sbjct: 298 NPIEVPKALLDNEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 ELKPDEARVRELIQEMASAYQEPEQVVSWYYKNDQQLNEVRSVVLEEQ 405
>gi|260172707|ref|ZP_05759119.1| DSBA oxidoreductase [Bacteroides sp. D2]
gi|315920999|ref|ZP_07917239.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313694874|gb|EFS31709.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 330
Score = 39.8 bits (90), Expect = 1.2, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 14/104 (13%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + V V +++ S + KQE+ I + + ++L L+
Sbjct: 22 NKNDVVTEVNGEQILLSELASQSKQEIFDILNT-----------AYEIKSRVLAGLIKQK 70
Query: 98 TLDQFIEDIGLEAD---HGRVWGEIARSPLFHGKDNKFSHDVFV 138
L+ ++ + + V +I K F+ F
Sbjct: 71 LLEDAAKEENMSLEEFIDWFVQQKICVGQDSLKKRYGFNTQSFY 114
>gi|119195457|ref|XP_001248332.1| DNA repair protein homolog [Coccidioides immitis RS]
Length = 1126
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 55/596 (9%), Positives = 156/596 (26%), Gaps = 30/596 (5%)
Query: 57 INSWKQELGMI-------SQKIGFVVNSERARSVGLDKKILDNLVSGA-TLDQFIEDI-G 107
+ + ++I + E ++ +L+ V + L Q + G
Sbjct: 305 RARLRNLRAQMAWVQVEEQERIRDSFDEEIIKATQ-KITVLEGEVERSDALYQDADSACG 363
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ + + R S SR + E + +
Sbjct: 364 IAVN-------LVREAKSELDTLHHSKKEIQSRYDSDVQERHELQATQRTIRDHIKAAEV 416
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+ ++ Q + A+ N L + +
Sbjct: 417 RIEDVKQQIAQEIQRLEDINGGSKAQRLSELEEMNAAVEAARNRHLEHKKDISRLQREIV 476
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ + + K+++ + K++ + + T+ +L+ Q E
Sbjct: 477 QAENKVKDTGEPITKQRQEIHQAEHHLRILMKDRLQQENALPETMSKLIRAIQGENSFCQ 536
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSF 346
+ + + L + Q S+ + S G+ ++ + + + ++ D T I
Sbjct: 537 KPIGPLGIHVTLLKPQWSSVLEKSFGNTLSGFVVTSKRDMNILSGIMQRVDCTFPIFIGN 596
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
S +P I N +R E +E+ + M +
Sbjct: 597 EAGTMDTSAHEPETKFDTALRILKIDNDLVRRQLIINHSIEQMLLIEDLREASSVMFTNA 656
Query: 406 RREKIVS-IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY- 463
+ + + D G P + L + + +
Sbjct: 657 PPKNVRRCYCIDARDRRRGIHLGFSRTGDPTQSPLGAYTGRARMKTDIEIQIRMQHDVIN 716
Query: 464 ----MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK--NF 517
+++ L++ + + + + KA + + + + +
Sbjct: 717 TLKDALRELESEHRNALNNLQKCKQALVRHERRERDLHLEVQKAEDFIEQLKEAIERDSV 776
Query: 518 RD-IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
D L +L + R+ + G + + + + + ++ + +
Sbjct: 777 EDGRLDWLKVALTESEDDKRVAEASYEDGINALDAMMEKLKSIKRELAAKDAEIVAIDRK 836
Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH-DNLIQRYLDGEK 631
N + V A ++ + + + + R +D +
Sbjct: 837 VRILESEESRASARRRKALDEKNAAI-SQVEAAIRDKIEIERNRQETVARVIDFSE 891
>gi|324999487|ref|ZP_08120599.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudonocardia sp.
P1]
Length = 353
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 23/226 (10%), Positives = 64/226 (28%), Gaps = 10/226 (4%)
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ A +++ + + +V + + D + V+ + + L + + L+
Sbjct: 102 QATAASLVVEQAAAEQNVVGPETEVQDALARIVEREFPGGRADFVRALGNLGVSEPDLTA 161
Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE------VSSKANQL 506
+ L P D+ + + + + + E KA+ L
Sbjct: 162 ELHRQLVTSRLFEQVTAGVPPVTDQDVRTAFDERRDQMQVPEQRELRNIVVDSRDKADDL 221
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTN-QINRMDNENKFFGYDGISQVFSGPVEMVKCFPI 565
+G +F + + T F+ P + P+
Sbjct: 222 RRRLD-DGADFATLARADSMDESTKQAGGALGKLPATALDQPFADAAFTTPSGGLFG-PV 279
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD-LLDSVIAYL 610
+ + + +V ++ L + + D+ +L
Sbjct: 280 QTRFGWNLGQVAGITPAVPLTFEQVAENLRATLTDERAGDAWREWL 325
Score = 38.3 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 19/162 (11%), Positives = 42/162 (25%), Gaps = 7/162 (4%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
R A + + + L + V+ V + + F + +
Sbjct: 25 RGRTAALMVGIAVAATSGGHLVVDRLTGLPEGAVLRVNDVVLSEADFQGQVDEIKALYGV 84
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ + +LV ++Q + + V +AR
Sbjct: 85 EQPSEDADRDRFRRDAAQATAASLV----VEQAAAEQNVVGPETEVQDALARIVEREFPG 140
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGG 171
FV L G++E + + L + + G
Sbjct: 141 G---RADFVRALGNLGVSEPDLTAELHRQLVTSRLFEQVTAG 179
>gi|240143523|ref|ZP_04742124.1| phosphonate ABC transporter, permease protein PhnE [Roseburia
intestinalis L1-82]
gi|257204559|gb|EEV02844.1| phosphonate ABC transporter, permease protein PhnE [Roseburia
intestinalis L1-82]
gi|291537163|emb|CBL10275.1| phosphonate ABC transporter, permease protein PhnE [Roseburia
intestinalis M50/1]
Length = 269
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 1 MLEIIRKAS----RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVP 52
M E I+K +TW AKI + ++ L W LS + S S + SV + +
Sbjct: 1 MNESIKKMYEQEPKTWYAKIIVALIVAALLAWSLSTVQSTGSNGSGL-SVAGKIIS 55
>gi|153809076|ref|ZP_01961744.1| hypothetical protein BACCAC_03384 [Bacteroides caccae ATCC 43185]
gi|149128409|gb|EDM19628.1| hypothetical protein BACCAC_03384 [Bacteroides caccae ATCC 43185]
Length = 460
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 27/291 (9%), Positives = 72/291 (24%), Gaps = 27/291 (9%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ + + ++ K ED K+ + EI
Sbjct: 161 RYFKDLPQDSIPYIPTQVEVQIITLQPKIPVAEIEDVKKRLRDYTDRVTKGEIDFSTLAR 220
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
G + F DP V G ++ I++
Sbjct: 221 LYSEDKASAIKGGECGFMGRGM-MDPSYANVAFSLQDPKKVSKIVESEFGYHIIQLIEKR 279
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG------ 525
+ + + V + K E ++ + + + +F + +
Sbjct: 280 GDRVNTRHILLRPKV-----SEKELTEACARLDSIADDIRANKFSFDEAAAVISHDKDTR 334
Query: 526 ------ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-----PIENGLSYVVF 574
++ + + + + D V V + + +
Sbjct: 335 NNHGIMVNINENSGVTTSKFQMQDLPQDVAKVVDKMNVGEISKAFTMINEKDGKEVCAIV 394
Query: 575 KVTNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K+ K ++ + +++L I + V +++N
Sbjct: 395 KLKAKINGHKATIAEDYQDLKEIVMDKRREEMLHKWILDKQKHTYVRINEN 445
>gi|66044991|ref|YP_234832.1| trigger factor [Pseudomonas syringae pv. syringae B728a]
gi|75502668|sp|Q4ZVM8|TIG_PSEU2 RecName: Full=Trigger factor; Short=TF
gi|63255698|gb|AAY36794.1| Trigger factor [Pseudomonas syringae pv. syringae B728a]
Length = 436
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ + G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDDARVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 405
>gi|15606785|ref|NP_214165.1| hypothetical protein aq_1694 [Aquifex aeolicus VF5]
gi|2984020|gb|AAC07564.1| hypothetical protein aq_1694 [Aquifex aeolicus VF5]
Length = 237
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 25/211 (11%), Positives = 56/211 (26%), Gaps = 10/211 (4%)
Query: 409 KIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQI 468
I + + G + + K +A +
Sbjct: 34 DIPDEKVDEIVQQIAKANGMTPQELARELSKYGLTLQDFREFVKKELIATEGLREYLRRK 93
Query: 469 KESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASL 528
E + VK K ++ + K +L+ E N +++ + LG
Sbjct: 94 VELSEIELELAKLKEGKVKTK-KRIELVTILKDKGKELLREIESGNLNLKELAEKLGGEY 152
Query: 529 LTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS-KVGPVQEK 587
+ E + QV+ V E+ V KV +
Sbjct: 153 QSLE------VEKGDLIKELDEQVWKSKEGDV--IFAEDKDQIYVVKVGKILTEVSGVNE 204
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
++ + ++ + ++ LK +T+
Sbjct: 205 EELKRKILAKKFQEEYEKLLKELKKNSVITI 235
>gi|39934430|ref|NP_946706.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris CGA009]
gi|39648279|emb|CAE26799.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris CGA009]
Length = 347
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 43/133 (32%), Gaps = 9/133 (6%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
+ + + G +F I G + + + + ++V
Sbjct: 213 RKSVDDIQRKLKAPGADFSAIASEAGDA--NAGALGWV--VENQIRPEIRTKVMELAKNA 268
Query: 560 VKCFPIENGLSYVVFKVTNSKVG----PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ PI+ + KV ++K + +D + + + L + +A L Q
Sbjct: 269 I-SEPIKLDDGWHFIKVLDTKAPYTRTLPEVRDGLVQQIRSERSAALRRAYLAELLKQQP 327
Query: 616 VTVHDNLIQRYLD 628
+++ + L+
Sbjct: 328 PVINELALAGLLN 340
>gi|300214306|gb|ADJ78722.1| Foldase protein prsA [Lactobacillus salivarius CECT 5713]
Length = 296
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 30/134 (22%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
I G+ + S TV + K+ S + +S K+
Sbjct: 8 AISGIVLTFGLAACSKTVATTSGGKITESEYYSSMKKTSSG------------------- 48
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
K++L ++ L+ ++ G + +V + +G F S LA+
Sbjct: 49 -KQVLQQMILNKVLE---KEYGSKVSDKKVNEQYNTYKKQYGSS-------FDSVLAQND 97
Query: 146 INEKEYIDHYTKML 159
+ + + L
Sbjct: 98 MTKSSFKQEIRSNL 111
>gi|289679414|ref|ZP_06500304.1| trigger factor [Pseudomonas syringae pv. syringae FF5]
gi|302187984|ref|ZP_07264657.1| trigger factor [Pseudomonas syringae pv. syringae 642]
gi|330897795|gb|EGH29214.1| trigger factor [Pseudomonas syringae pv. japonica str. M301072PT]
gi|330939705|gb|EGH43000.1| trigger factor [Pseudomonas syringae pv. pisi str. 1704B]
gi|330952796|gb|EGH53056.1| trigger factor [Pseudomonas syringae Cit 7]
Length = 436
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ + G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDDARVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 405
>gi|327188010|gb|EGE55240.1| putative peptidyl-prolyl cis-trans isomerase protein [Rhizobium
etli CNPAF512]
Length = 314
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 17/164 (10%), Positives = 38/164 (23%), Gaps = 18/164 (10%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + +++ A+ + L+ Q +
Sbjct: 35 AVVNGTAITSGDVAK-----RQAFLRLQHTAADAKTAK---------EQLIDETLKRQEV 80
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + V AR NK S L R G+ + +S
Sbjct: 81 ARVHMSVSQQDVDASFARFSA----GNKLSVAQMSQILDRAGVGVDHFKGFIAVQMSWPR 136
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
VV G + ++ + + + +
Sbjct: 137 VVNARYGSTTRLSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIP 180
>gi|320327655|gb|EFW83663.1| trigger factor [Pseudomonas syringae pv. glycinea str. race 4]
gi|330882126|gb|EGH16275.1| trigger factor [Pseudomonas syringae pv. glycinea str. race 4]
Length = 436
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ + G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDDARVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 405
>gi|34557645|ref|NP_907460.1| cell binding factor 2 precursor major antigen PEB4A [Wolinella
succinogenes DSM 1740]
gi|34483362|emb|CAE10360.1| CELL BINDING FACTOR 2 PRECURSOR MAJOR ANTIGEN PEB4A [Wolinella
succinogenes]
Length = 271
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL-----KK 292
+ ++ ++S +++ Y++NKEK+ PE+ + ++ N+KEA E + K
Sbjct: 102 WMRQQMNNAKVSEGDMRKFYDENKEKFVQPELVKAKHILVQNEKEAKEVIAEIGKAGAKA 161
Query: 293 GKKFIQLAEEQGKS---LSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+KF +LA+ + + LG FSK+ + A++ F+L K + FGY
Sbjct: 162 SEKFSELAKSKSIDPAGQNGGELGWFSKDQMV-PEFANAAFALQKGSYSKTPVKTQFGYH 220
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEF 394
+ + + K + +++VK I ++I K + V K+L E
Sbjct: 221 VIYAEDKKAQAVLPYEDVKPQIEQNLKIQKFRDSVSSTAKKLREK 265
>gi|261344779|ref|ZP_05972423.1| hypothetical protein PROVRUST_06044 [Providencia rustigianii DSM
4541]
gi|282567224|gb|EFB72759.1| peptidylprolyl cis-trans isomerase SurA [Providencia rustigianii
DSM 4541]
Length = 440
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 31/195 (15%), Positives = 58/195 (29%), Gaps = 11/195 (5%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + + + V V S N ++ G V ++
Sbjct: 7 LILGLVFASSASLAAPQQMDKVAAVVNNGVVLESDVQNMINTVKLN-ARNSGQQVPDDQT 65
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
L +I++ LV + Q + L V I + N + R
Sbjct: 66 ----LRSQIIERLVMDNIMLQMANQMQLNIPEEAVNATIEDI----ARQNGLTLAQMEKR 117
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L +GIN +Y K + +V V A ++++ + +N
Sbjct: 118 LVADGINMAKYRSEIRKEMLLAEVRNNEVRRRITILPQEVDALSNQMDSQANAEMGVNLS 177
Query: 201 H--VPAIADPSNAVL 213
H +P +P+ L
Sbjct: 178 HILIPLPENPTPEQL 192
>gi|71735514|ref|YP_273934.1| trigger factor [Pseudomonas syringae pv. phaseolicola 1448A]
gi|118574079|sp|Q48KZ1|TIG_PSE14 RecName: Full=Trigger factor; Short=TF
gi|71556067|gb|AAZ35278.1| trigger factor [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 436
Score = 39.8 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ + G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDDARVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 405
>gi|304382089|ref|ZP_07364600.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
gi|304336687|gb|EFM02912.1| peptidyl-prolyl cis-trans isomerase [Prevotella marshii DSM 16973]
Length = 473
Score = 39.8 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 14/147 (9%), Positives = 33/147 (22%), Gaps = 11/147 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ VG + + S + + G + D I + L
Sbjct: 49 DEVIWVVGDEPILKSDVE-----MMRQQGEAEGMKFPGDP------DCSIPEQLAVQKLF 97
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ + I + + + + R +E D +
Sbjct: 98 LHQAALDSISVTETEINQSIDQQINYWIQMIGSREKLEEYRKQSITQIRQELHDDFKNRQ 157
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFY 186
+ V G+ + + R
Sbjct: 158 MIHKMREKLVEGISVTPGEVRAYFRDM 184
>gi|257483816|ref|ZP_05637857.1| trigger factor [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|289627503|ref|ZP_06460457.1| trigger factor [Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289649946|ref|ZP_06481289.1| trigger factor [Pseudomonas syringae pv. aesculi str. 2250]
gi|298486262|ref|ZP_07004325.1| Cell division trigger factor [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|298159269|gb|EFI00327.1| Cell division trigger factor [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|320325360|gb|EFW81427.1| trigger factor [Pseudomonas syringae pv. glycinea str. B076]
gi|330868376|gb|EGH03085.1| trigger factor [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330889998|gb|EGH22659.1| trigger factor [Pseudomonas syringae pv. mori str. 301020]
gi|330985638|gb|EGH83741.1| trigger factor [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 436
Score = 39.8 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ + G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDDARVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 405
>gi|330975105|gb|EGH75171.1| trigger factor [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 436
Score = 39.8 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ + G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + S + +
Sbjct: 358 DLKPDDARVREMIQEMASAYQEPEQVVAWYYKSEQQMNEVRSVVLEEQ 405
>gi|330959386|gb|EGH59646.1| trigger factor [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 436
Score = 39.8 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ + G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDDARVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 405
>gi|291279157|ref|YP_003495992.1| hypothetical protein DEFDS_0758 [Deferribacter desulfuricans SSM1]
gi|290753859|dbj|BAI80236.1| hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 325
Score = 39.8 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 1/82 (1%)
Query: 548 GISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVI 607
I ++F P N Y++ KV + K V D+ + + ++M
Sbjct: 245 PIKEIFKLKKGDFGG-PYRNIYGYLIVKVIDIKPSEVLPFDEIKNEIERLMKLKKFKDYY 303
Query: 608 AYLKSQYSVTVHDNLIQRYLDG 629
L + + ++
Sbjct: 304 KNLLKRAKDEANIKILDNNFSN 325
>gi|218661101|ref|ZP_03517031.1| peptidyl-prolyl cis-trans isomerase protein [Rhizobium etli IE4771]
Length = 295
Score = 39.8 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 17/164 (10%), Positives = 39/164 (23%), Gaps = 18/164 (10%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + +++ A+ + L+ Q +
Sbjct: 16 AVVNGTAITSGDVAK-----RQAFLRLQHTKADAKTAK---------EQLIDETLKRQEV 61
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + V AR NK S + L R G+ + +S
Sbjct: 62 ARVRMSVSQQDVDASFARFSA----GNKLSVEQMSQILDRAGVGVDHFKGFIAVQMSWPR 117
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
VV G + ++ + + + +
Sbjct: 118 VVNARYGSTSRLSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIP 161
>gi|126340557|ref|XP_001363841.1| PREDICTED: similar to laminin, beta 1 [Monodelphis domestica]
Length = 1786
Score = 39.8 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 28/273 (10%), Positives = 77/273 (28%), Gaps = 29/273 (10%)
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV-DFAGKDVKGKEVAAIPYKE 437
K + ++ K E+ L + ++ + V + K +
Sbjct: 1485 KTNATKEKVDKSNEDLRNLIKQIRNFLTQDSADLDSIEAVANEVLKMEMPSTPQQLQNLT 1544
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR------KLEEVLTDVKKDWK 491
+ + + + D + + + E+ A + V +++ K
Sbjct: 1545 EDIRERVESLSQVEVILQQSAGDIARAEMLLDEAKRASKSATDIKVTTDMVKEALEEAEK 1604
Query: 492 TVKTAEEVSSKANQ-----------LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
AE+ +A++ + E + + + + + ++ R +
Sbjct: 1605 AQIAAEKAIKQADEDIQGTQNLLTSIESETAASEETLYNASQRISELERNVEELKRKAAQ 1664
Query: 541 NKFFGY---DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQM 597
N + V + K E Y + +K + + + Q
Sbjct: 1665 NAGEAEYIGQVVDTVKQSADHVKKVLDSELSGKYKRVENLIAKKTEESVDARKKAEMLQN 1724
Query: 598 MNKDLLD------SVIAYLKSQYSVTVHDNLIQ 624
K LL ++ L+ +Y + ++
Sbjct: 1725 EAKMLLAQANSKLQLLKDLEQKY--EDNQKYLE 1755
>gi|331019228|gb|EGH99284.1| trigger factor [Pseudomonas syringae pv. lachrymans str. M302278PT]
Length = 422
Score = 39.8 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ + G + + ++
Sbjct: 284 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 343
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 344 DLKPDDARVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 391
>gi|190891133|ref|YP_001977675.1| peptidyl-prolyl cis-trans isomerase [Rhizobium etli CIAT 652]
gi|218517103|ref|ZP_03513943.1| probable peptidyl-prolyl cis-trans isomerase protein [Rhizobium
etli 8C-3]
gi|190696412|gb|ACE90497.1| probable peptidyl-prolyl cis-trans isomerase protein [Rhizobium
etli CIAT 652]
Length = 314
Score = 39.8 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 17/164 (10%), Positives = 38/164 (23%), Gaps = 18/164 (10%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + +++ A+ + L+ Q +
Sbjct: 35 AVVNGTAITSGDVAK-----RQAFLRLQHTAADAKTAK---------EQLIDETLKRQEV 80
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + V AR NK S L R G+ + +S
Sbjct: 81 ARVHMSVSQQDVDASFARFSA----GNKLSVAQMSQILDRAGVGVDHFKGFIAVQMSWPR 136
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
VV G + ++ + + + +
Sbjct: 137 VVNARYGSTSRLSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIP 180
>gi|330963321|gb|EGH63581.1| trigger factor [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 436
Score = 39.8 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ + G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDDARVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 405
>gi|308810048|ref|XP_003082333.1| Salt-sensitive 3'-phosphoadenosine-5'-phosphatase HAL2/SAL1 (ISS)
[Ostreococcus tauri]
gi|116060801|emb|CAL57279.1| Salt-sensitive 3'-phosphoadenosine-5'-phosphatase HAL2/SAL1 (ISS)
[Ostreococcus tauri]
Length = 587
Score = 39.8 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 2/129 (1%)
Query: 35 FSVSGSSTVVSVGRQKVPFSSF--INSWKQELGMISQKIGFVVNSERARSVGLDKKILDN 92
F + + V + V + F L + +G V + +L
Sbjct: 284 FELRNNEKVAKLDDSPVTVADFAAQAVVSLVLERAAPSVGLVAEESASDMRSDGGAVLRR 343
Query: 93 LVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI 152
V+ + E+ V I R G F + + +++
Sbjct: 344 RVTEKVNETLAEEFERTFSEDEVMDAIDRGQTEGGASGSFGFWIQSTVRKVSSMDDNTPS 403
Query: 153 DHYTKMLSR 161
++ R
Sbjct: 404 RWHSWKEVR 412
>gi|62184980|ref|YP_219765.1| putative inner membrane protein [Chlamydophila abortus S26/3]
gi|62148047|emb|CAH63799.1| putative inner membrane protein [Chlamydophila abortus S26/3]
Length = 690
Score = 39.8 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 42/358 (11%), Positives = 82/358 (22%), Gaps = 25/358 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPF-LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
L K + ++ + + V + WG S V SV +K F+
Sbjct: 4 LAFFYKHQKKFMGFVIVGVCVSGIGIGWGRYPGESSRGSKKIVFSVPGKKYSEREFLAFK 63
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ G L ++ L N + +
Sbjct: 64 RFFTNEAYPFTGNPQAWNFLNEGLLTERFLTNKLGEKLFLKVYS---------------Q 108
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM----RPSN 176
P F + N S+ F S K + L + V R
Sbjct: 109 DYPAFKKEKNYQSYRRFDSLFISSEEVWKSSAPRLYQALVALQEIHDPVSPEGFVARVQL 168
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
L ++ Y + ++Y L + + ++ Y +
Sbjct: 169 FLEEKKFPHYILKQMLEYRRQMFNLPQDPVLAQGKDLHLFGYRNIADWFGDAYVSAAVEA 228
Query: 237 FDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKF 296
E+K ++ L+ + ++K + + + A G
Sbjct: 229 LLRFVNEQKKNVAMPSLKEAQQDFQDKAKQAFTKLSKHAGLTLSFDQFVASYFDFMGVSE 288
Query: 297 IQLAEEQG-----KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
+ K GS + +Y P F
Sbjct: 289 SEFFNIYREILLCKRAFLQLEGSVTFDYRPLQEFFSMGKDSTSVEMVKLPREYQFKNK 346
>gi|89898508|ref|YP_515618.1| hypothetical protein CF0701 [Chlamydophila felis Fe/C-56]
gi|89331880|dbj|BAE81473.1| hypothetical protein [Chlamydophila felis Fe/C-56]
Length = 360
Score = 39.8 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 17/175 (9%), Positives = 47/175 (26%), Gaps = 11/175 (6%)
Query: 40 SSTVVSVG-RQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ V V I+ ++ + + +L++++
Sbjct: 52 DRVLFKVDEDNVVTTLDVIHKLNLLFASSYPQLVDSYPARSQYYTAMWPVVLESVIDEFL 111
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ + ++ D V EI F D+ + + ++ + +
Sbjct: 112 MVADAKAKKIQVDSTTVNQEIEAM---------FGRDLSQFYV-HFEMTPEDIFNVVNRT 161
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
L V+GM V + + + Y + ++ + L
Sbjct: 162 LIAQRVMGMMVRSKVMLKVTPGKIREHYNQLAEDAAKTTVWKYRVVTIKAATESL 216
>gi|212711199|ref|ZP_03319327.1| hypothetical protein PROVALCAL_02271 [Providencia alcalifaciens DSM
30120]
gi|212686367|gb|EEB45895.1| hypothetical protein PROVALCAL_02271 [Providencia alcalifaciens DSM
30120]
Length = 451
Score = 39.8 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 31/213 (14%), Positives = 62/213 (29%), Gaps = 17/213 (7%)
Query: 3 EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
+ R + W + L ++F + V+ + +
Sbjct: 6 QFYRTIMKNWR-TLILGLMFASSASLAAPQQMDKVAAVVN---------NGVVLESDVQN 55
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARS 122
+ + N + L ++I+D LV + Q + + V IA
Sbjct: 56 MINTVKLNA-RNANQQVPDDQTLRQQIIDRLVMDNIMLQMANQMQINIPEEAVNTTIADI 114
Query: 123 PLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQA 182
+ N + RL +GIN +Y K + +V V A
Sbjct: 115 ----ARQNNLTLPQMEKRLTADGINIAKYRSEIRKEMLLAEVRNNEVRRRITILPQEVDA 170
Query: 183 KRFYFENRSVDYIVLNNRH--VPAIADPSNAVL 213
+++ +N H +P +P+ L
Sbjct: 171 LADQMDSQMNAQKGVNLSHILIPLPENPTPEQL 203
>gi|28870882|ref|NP_793501.1| trigger factor [Pseudomonas syringae pv. tomato str. DC3000]
gi|213968833|ref|ZP_03396974.1| trigger factor [Pseudomonas syringae pv. tomato T1]
gi|301384121|ref|ZP_07232539.1| trigger factor [Pseudomonas syringae pv. tomato Max13]
gi|302059516|ref|ZP_07251057.1| trigger factor [Pseudomonas syringae pv. tomato K40]
gi|302135033|ref|ZP_07261023.1| trigger factor [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|41018205|sp|Q87YR5|TIG_PSESM RecName: Full=Trigger factor; Short=TF
gi|28854131|gb|AAO57196.1| trigger factor [Pseudomonas syringae pv. tomato str. DC3000]
gi|213926436|gb|EEB59990.1| trigger factor [Pseudomonas syringae pv. tomato T1]
Length = 436
Score = 39.8 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ + G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDDARVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 405
>gi|164688476|ref|ZP_02212504.1| hypothetical protein CLOBAR_02121 [Clostridium bartlettii DSM
16795]
gi|164602889|gb|EDQ96354.1| hypothetical protein CLOBAR_02121 [Clostridium bartlettii DSM
16795]
Length = 250
Score = 39.8 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 39/121 (32%), Gaps = 20/121 (16%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ VG +++ N+ + +Q+ ++ K +L++LV+ L
Sbjct: 3 KKILAKVGDKEISNIDIDNAIQGLDPYQAQQF---------QTEEGRKYVLEDLVNQELL 53
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ +D +I F + + +V + + + + D +
Sbjct: 54 YMYAKD-----------NKIDEDEAFKKEMAEIEKNVLKQYVINQILTSVKLTDEEKQAF 102
Query: 160 S 160
Sbjct: 103 Y 103
>gi|89896969|ref|YP_520456.1| hypothetical protein DSY4223 [Desulfitobacterium hafniense Y51]
gi|89336417|dbj|BAE86012.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 368
Score = 39.8 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 24/267 (8%), Positives = 71/267 (26%), Gaps = 30/267 (11%)
Query: 3 EIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
+ +K R + A ++ + G+ + TV ++ + + K+
Sbjct: 67 DTFKKWLRRFRAGAIAGLIVLILAAVGIGVVSYKAG---TVAE--KETISTKDVVRVLKK 121
Query: 63 ELGMISQKIGFVVNSE-------RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
+ V++ + + GLD++ L L +I + +
Sbjct: 122 AGLSLKASPSPVIDPSKCVLGDVQPKVYGLDEEGLGQL--------YIYEFDSTLARRSI 173
Query: 116 WGEIA----------RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVV 165
I + P ++ ++ + I T+ L +T
Sbjct: 174 LESIKSMEDDPFTSSQIPSVAYAAKNMVIVAVLNISEENWQSDYDKIAPMTQTLGKTIFY 233
Query: 166 GMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR 225
+ G + + ++ + + + L + ++
Sbjct: 234 DLNQGEKWVLYGEGKDWEAKLVVSTYEEWWTGEDGYKKFKLYMTKTPLVNYKGNPEEIKN 293
Query: 226 APEYKRISYILFDVHEKEKKIEISNDE 252
+ E++ ++E
Sbjct: 294 INYSFEYLNGKSTLTEEDYHQGNFDEE 320
>gi|269962890|ref|ZP_06177230.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832444|gb|EEZ86563.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 1207
Score = 39.8 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 30/115 (26%), Gaps = 17/115 (14%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSF----INSWKQELGMISQKIGFVVNSE 78
+ F+ L ++ V + + F ++ +
Sbjct: 258 LTFVAPTQGQTLMVGQATTIKARVDGELISKLEFWANDRKLGQRNIAAGQTTYSQSWTPN 317
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ L +LD + ++Q + I +P F + FS
Sbjct: 318 EVGNATLKVVVLDQ--NNQMVEQ-----------RSIAVAIEAAPSFVKPEVSFS 359
>gi|238024223|ref|YP_002908455.1| putative PpiC-type peptidyl-prolyl cis-trans isomerase
[Burkholderia glumae BGR1]
gi|237878888|gb|ACR31220.1| Putative PpiC-type peptidyl-prolyl cis-trans isomerase
[Burkholderia glumae BGR1]
Length = 319
Score = 39.8 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 6/64 (9%), Positives = 16/64 (25%), Gaps = 14/64 (21%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
V V + + V + + + + + + L++ L
Sbjct: 72 EGVVARVNGVAITRDQLEQA--------------RVAANQPDTASVRAALKNQLITRELL 117
Query: 100 DQFI 103
Q
Sbjct: 118 RQAA 121
>gi|224532043|ref|ZP_03672675.1| conserved hypothetical protein [Borrelia valaisiana VS116]
gi|224511508|gb|EEF81914.1| conserved hypothetical protein [Borrelia valaisiana VS116]
Length = 500
Score = 39.8 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 43/343 (12%), Positives = 96/343 (27%), Gaps = 14/343 (4%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV--VSVGRQKVPF---SSFINSWKQELG 65
L+++ F+I L +F + SS++ S Q + + S F
Sbjct: 23 GVWGIFTLILIVFGFIIAPLLPGMFDNANSSSLKFGSYKGQPIYYKKDSKFAKYVNYYSN 82
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
+ S+ G N + V I+ + + RSP +
Sbjct: 83 LYSRLQGNAKNIN--IDYNVWYLAFMKYVEDIAFFDLIKKYNFYISKEMLNKNLLRSPEY 140
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
+ FS + + + D + + ++V + + L + K
Sbjct: 141 LDSNGNFSSKRYN---KASDYQKVKIYDDMVENMLFSNVKIFLNSNLIFPDSLFNTIKDM 197
Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
R + Y+ L+ + A K+ K
Sbjct: 198 STVERQISYLSLSYQDFSNKEAIFYAEKNLNLFKHLSLASIRFKNMNDARNAYDKLVNKT 257
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL----AE 301
+L ++ N + S + + + +KE + SL++G+ +
Sbjct: 258 PFEELAKLYSDDIANFKGVVSLDKYYFDLDLNVEKKEDLNSIFSLREGEFSKPIKIKNKN 317
Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
E + ++ F K D++ + +
Sbjct: 318 EYQIYKAFGNVHDFDKNSDRDINSVKDYIETYEPSVIEGYLEN 360
>gi|213521158|gb|ACJ50515.1| trigger factor [Pseudomonas fluorescens]
Length = 436
Score = 39.5 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 36/108 (33%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ +V G + + ++
Sbjct: 298 NPIEVPKALLSNEVDRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDEDRVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 405
>gi|46580311|ref|YP_011119.1| hypothetical protein DVU1902 [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449728|gb|AAS96378.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
Hildenborough]
Length = 312
Score = 39.5 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 44/150 (29%), Gaps = 16/150 (10%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKK---ILDNLVSGAT 98
V +V V + + G V L + +L +LV
Sbjct: 22 VVATVNGHPVNMKLLQATHDAYAQSWTGAEGPSV-------EALRSQYGAVLADLVVQEL 74
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ Q + +G + A + +F + L + ++ + + + +
Sbjct: 75 VLQKLAAVGASVTDAELGAAEAEV------RGDYPEGMFEAALVEDYLDLEVWREMLRRR 128
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
L+ T + + +L ++ +
Sbjct: 129 LALTKFAQVVLRSEVAISLEEVESWYRGHQ 158
>gi|15835249|ref|NP_297008.1| hypothetical protein TC0634 [Chlamydia muridarum Nigg]
gi|270285421|ref|ZP_06194815.1| hypothetical protein CmurN_03208 [Chlamydia muridarum Nigg]
gi|270289435|ref|ZP_06195737.1| hypothetical protein CmurW_03303 [Chlamydia muridarum Weiss]
gi|301336818|ref|ZP_07225020.1| hypothetical protein CmurM_03265 [Chlamydia muridarum MopnTet14]
gi|14195471|sp|Q9PK39|Y634_CHLMU RecName: Full=Uncharacterized protein TC_0634; Flags: Precursor
gi|7190673|gb|AAF39463.1| conserved hypothetical protein [Chlamydia muridarum Nigg]
Length = 353
Score = 39.5 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 24/252 (9%), Positives = 71/252 (28%), Gaps = 20/252 (7%)
Query: 18 LVVLFVPFLIWGLSDALFSVS---GSSTVV-------SVG-RQKVPFSSFINSWKQELGM 66
L + + +G + S S S V + V I+
Sbjct: 13 LGITIFSGIAFGYEGSFPSSSLEQNPSGVAIHNRVLFKIDEDTVVTTLDVIHKLNILFYS 72
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
++ V++ + +L+++++ + ++ + D V EI
Sbjct: 73 TCPQLVDSVSARSQYYSAMWPVVLESVINEFLMAADAKEKKIFIDPTSVNQEIEAM---- 128
Query: 127 GKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFY 186
F D+ + + + ++++ M + R+
Sbjct: 129 -----FGRDLSPFAKFFDMTPGDIFNVVHRVLVAQRIEGMMVRSRVMLKVTPGMVRDRYQ 183
Query: 187 FENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKI 246
+ V I S + + K ++ + + V + ++
Sbjct: 184 KLVEDASQVSQWTYRVLTIKAGSELLANKIAGKVQERLNEGDSWDKERLAAMVLSQGGQL 243
Query: 247 EISNDELQAEYE 258
S++ ++ + +
Sbjct: 244 ICSDEFIREDAQ 255
>gi|254281981|ref|ZP_04956949.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
gi|219678184|gb|EED34533.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
Length = 307
Score = 39.5 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 30/295 (10%), Positives = 83/295 (28%), Gaps = 11/295 (3%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
FLI G +F ++ + S ++ + + L S+ + +++ ++
Sbjct: 15 FLIMGAFLFVFYLAITDDEASEDGHRIVVDE--PTLLRFLQYRSKSFDPNMAAQKLSALN 72
Query: 85 L--DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR-----SPLFHGKDNKFSHD-V 136
+ +++L LV L + +GL D + + + + F + + V
Sbjct: 73 MSKREQLLMQLVREEALYREAGRLGLHRDDYVIKQRMVQKVEYLARGFGEAEQLIDRNAV 132
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ E+ I + + R L + F D V
Sbjct: 133 ATYYVENISRYEEPSIATFAHVFVRGLDDNARQRIKGLQQALSREDIAFSSAMGRGDRFV 192
Query: 197 LNNRHVPAIADPSNAVL-TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQA 255
+ +V D ++ ++ K + + + + + + +
Sbjct: 193 YHANYVERSRDMIDSHFGERFGAKLFEMSPDQKRWQGPVASDHGYHLVMLFKRDPASVPS 252
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
++Q + ++ +G + + Q
Sbjct: 253 LDSIYPRVAEDARRVALDQQTEQALTDIVSNYEVTFEGLPWAETLAWQTSDSDAG 307
>gi|323489424|ref|ZP_08094653.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planococcus
donghaensis MPA1U2]
gi|323396918|gb|EGA89735.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planococcus
donghaensis MPA1U2]
Length = 296
Score = 39.5 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 23/245 (9%), Positives = 66/245 (26%), Gaps = 13/245 (5%)
Query: 397 LGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV 456
+E+ +I + L++ D + + G+
Sbjct: 39 KNDLYEEMKTSIGEQAIQILLIEKVLADKYEVTDKEVDAEYDSNKEELGESFDEFLAQNN 98
Query: 457 ALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE-------VSSKANQLVLE 509
+ +++ + EV + +D+ + E + + +
Sbjct: 99 QTEESYKKVIRLNLLQEKALTEGVEVTDEEIQDYYDRQGTELNARHILVADEETANSLKK 158
Query: 510 YSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
EG +F + + + N N + + V+ +
Sbjct: 159 QLDEGADFAKLAEENSTDTGSGANGGNLDWFGPGAMVPEFEEAAYGLEVDEISEPVASEY 218
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV-----IAYLKSQYSVTVHDNLI 623
+++ + ++ + L + D +A L + +V + D +
Sbjct: 219 GFHIIQVLEKRQIEDQPALEDQKEELRTELALSKADQTTLLPKVAELMKEANVKIKDEDL 278
Query: 624 QRYLD 628
+ LD
Sbjct: 279 EGALD 283
>gi|227510549|ref|ZP_03940598.1| peptidylprolyl isomerase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190201|gb|EEI70268.1| peptidylprolyl isomerase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 293
Score = 39.5 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 30/280 (10%), Positives = 66/280 (23%), Gaps = 42/280 (15%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ W+ I L + + F + +V + K+ S++ +S K
Sbjct: 2 KKWL--IVLAGVLMSFTLAACGS--------KSVATTNGGKITESAYYSSLKGTSSG--- 48
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
K++L ++ L+ + G + V + + +G
Sbjct: 49 -----------------KQVLQQMILNKVLE---KQYGKKVKDSAVNKDFNKYKKQYGSS 88
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
F + L + G+ + D L V L Q K + +
Sbjct: 89 -------FNAVLQQNGMTASQLKDSIRSNLLLQQAVRD--NTKFTDAQLKAQFKSYQPKV 139
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
+V + A + K + + I +
Sbjct: 140 TVNQILVSKKSTAETVIKQLKAGKSFSSLAKKYSTDTATKNKGGRISAFDNTNTSLDSNF 199
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
+ K + + N
Sbjct: 200 KKAAFKLKNGDYTKTPVKTQYGYQVIQMVNHPAKGTYKDH 239
>gi|290988454|ref|XP_002676936.1| predicted protein [Naegleria gruberi]
gi|284090541|gb|EFC44192.1| predicted protein [Naegleria gruberi]
Length = 1745
Score = 39.5 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 51/520 (9%), Positives = 119/520 (22%), Gaps = 35/520 (6%)
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ +V I LF S D+ + + + +
Sbjct: 479 INISEYQV---IEDVGLFTDGCGFISPDLAREIYRKIK------QAESREKVHVFENAQY 529
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
V S I + +P+ + K N
Sbjct: 530 MVDVQMIYQDSDPVEDDMDDNVPSAFQIRFRGAKGMLLQNPNVKGIVLRESMVKFNVDLD 589
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
E E SN E ++ K+
Sbjct: 590 EDLDEEDESLSNIHVVGYSEPSNFAFANSTILYMMSGCVDGGEKFEGIIMNMWKDYVNDI 649
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ QL ++ K +L F ++ + + + I +
Sbjct: 650 LKTYSNEDTSQLMKKYFKEGDFHALNIFGLTKDVALAFL-AGPFRTQLLNLKLPIQNARR 708
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
F ++ + + KE + L E
Sbjct: 709 VYGVCDPLEVLEPDEVFVRIRMEDGTLKTLEGTIAITKEPCLHRGDLRLLKAKKIESLEY 768
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + + + + + + ++ L + +
Sbjct: 769 --LSEVIVFPIKGEKRPIPNMITGSDLDGDKYLVIWDEPLVSSFVQQFEPGNFDEEIEGE 826
Query: 468 IKESIPARDRKLEEVL----TDVKKDWKTVKTAEEVSSKAN--QLVLEYSKEGKNFRDIG 521
+ P + + +W + + + ++ + ++ K+GK F+
Sbjct: 827 KRNFEPDVFKDWIGLRHSYVDSYGYEWSKGENWKTMQRLSDIVNMAVDAPKKGKTFKAGA 886
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS-K 580
I R + F + V + + + +VT K
Sbjct: 887 ME--------KDIVRNFPKYPHFHNSKTKEAVR-----VSTSVVGKMYDFAIDRVTERFK 933
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHD 620
PV +K + T LD++ L+ ++V+
Sbjct: 934 FQPVTDKRQTS---TDDKEYLFLDNLYQVLRRNKDISVNQ 970
>gi|297582706|ref|YP_003698486.1| hypothetical protein Bsel_0380 [Bacillus selenitireducens MLS10]
gi|297141163|gb|ADH97920.1| hypothetical protein Bsel_0380 [Bacillus selenitireducens MLS10]
Length = 175
Score = 39.5 bits (89), Expect = 1.7, Method: Composition-based stats.
Identities = 14/145 (9%), Positives = 40/145 (27%), Gaps = 28/145 (19%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
FLI A + S + ++ + + + +
Sbjct: 9 FLIALTGCAANAEDPSYVIATLDGETITMEDYFFRYT----------------------- 45
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF----SHDVFVSR 140
D +++ + + + ED+G+ V + + +
Sbjct: 46 -DPSMIEEYLKERVMIKEAEDLGITVSEDEVNASRQMLFPDSDAEERLAFWEDRAFIDEQ 104
Query: 141 LAREGINEKEYIDHYTKMLSRTDVV 165
R ++E Y + + + R+ +
Sbjct: 105 AERLDMDELAYFKEWEEKMYRSQLF 129
>gi|255011717|ref|ZP_05283843.1| putative exported peptidyl-prolyl cis-trans isomerase [Bacteroides
fragilis 3_1_12]
gi|313149552|ref|ZP_07811745.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
gi|313138319|gb|EFR55679.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis 3_1_12]
Length = 456
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 29/287 (10%), Positives = 71/287 (24%), Gaps = 23/287 (8%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ + + ++ + K ED KR + E +
Sbjct: 161 RYFKDLPQDSIPYVPTQVEVQIITQQPKVPISEIEDVKRRLREYTDRINKGESDFST-LA 219
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ A K + + + F D V G ++ I++
Sbjct: 220 LLYSEDRGSAIKGGETGFMGKGQMVPEYANVAFNLQDTKKISKIVESEYGFHIIQLIEKR 279
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ + + V + K E +++ + + + + F L T
Sbjct: 280 GDRINTRHILLKPKV-----SDKELNEANARLDSIANDIRSDKFTFDQAAAALSQDKDTR 334
Query: 532 NQINR--------MDNENKFFGYDGISQVFSGPVEMVKCF-----PIENGLSYVVFKVTN 578
N E + + V + + P + + K+
Sbjct: 335 NNHGLMQNPMNQTAKFEMQDLPQEIAKVVDKMNIGEISKAFTMVNPKDGKEVCAIVKLKA 394
Query: 579 S----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K + + ++ L I + V ++
Sbjct: 395 RINGHKATITDDYQNLKEIVLDKRREEALQKWIVEKQKHTYVRINPA 441
>gi|261401822|ref|ZP_05987947.1| conserved hypothetical protein [Neisseria lactamica ATCC 23970]
gi|269208029|gb|EEZ74484.1| conserved hypothetical protein [Neisseria lactamica ATCC 23970]
Length = 288
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + S +LF+ T+ +V QK+ S NS
Sbjct: 5 ILTSVALLACSGSLFA----QTLATVNGQKIDSSVIDAQVAAFRAE---------NSSAE 51
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
S L + +L+ ++ + Q ++ + L+ +A+ K F +
Sbjct: 52 DSPQLRRALLNQEITHTVVAQEVKRLKLDRS-AEFKDMLAKLRAEAEKSGDDKKPSFKTV 110
Query: 141 LAR 143
Sbjct: 111 WQA 113
>gi|16801386|ref|NP_471654.1| hypothetical protein lin2322 [Listeria innocua Clip11262]
gi|46396988|sp|Q929F4|PRSA2_LISIN RecName: Full=Foldase protein prsA 2; Flags: Precursor
gi|16414834|emb|CAC97550.1| lin2322 [Listeria innocua Clip11262]
Length = 291
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 29/231 (12%), Positives = 65/231 (28%), Gaps = 2/231 (0%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + E ++ I + +DV K V
Sbjct: 34 DVTQDELYDAMKDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFKEYKSQYGDQFSAVLA 93
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ K L + + + D+ L+E + D +KA +
Sbjct: 94 QSGLTEKSFKSQLKYNLLVQKATEANADTSDKALKEYYKTWQPDITVSHILVADENKAKE 153
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
V + K+G F D+ K T ++ ++ + P
Sbjct: 154 -VEQKLKDGAKFADLAKEYSTDTATKENGGQLAPFGSGKMDPAFEKAAYALKNKGDISAP 212
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + ++ +KDK + ++ +++ LK +Y
Sbjct: 213 VKTQYGYHIIQMDKPATKTTFDKDKKAVKEAYLASQLTTENMQKTLKKEYK 263
>gi|53715356|ref|YP_101348.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
gi|60683325|ref|YP_213469.1| putative exported peptidyl-prolyl cis-trans isomerase [Bacteroides
fragilis NCTC 9343]
gi|265767843|ref|ZP_06095375.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
gi|52218221|dbj|BAD50814.1| peptidyl-prolyl cis-trans isomerase [Bacteroides fragilis YCH46]
gi|60494759|emb|CAH09565.1| putative exported peptidyl-prolyl cis-trans isomerase [Bacteroides
fragilis NCTC 9343]
gi|263252515|gb|EEZ24043.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_16]
gi|301164814|emb|CBW24374.1| putative exported peptidyl-prolyl cis-trans isomerase [Bacteroides
fragilis 638R]
Length = 456
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 30/287 (10%), Positives = 74/287 (25%), Gaps = 23/287 (8%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ + + ++ + K ED KR + E +
Sbjct: 161 RYFKELPQDSIPYVPTQVEVQIITQQPKIPVAEIEDVKRRLREYTDRINKGESDFST-LA 219
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ A K + + + F D V G ++ I++
Sbjct: 220 LLYSEDRGSAIKGGETGFMGKGQMVPEYANVAFNLQDTKKISKIVESEYGFHIIQLIEKR 279
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ + + V + K +E +++ + + + + F L T
Sbjct: 280 GDRINTRHILLKPKV-----SDKELDEANARLDSIANDIRSDKFTFDQAASALSQDKDTR 334
Query: 532 NQINRMDNEN--------KFFGYDGISQVFSGPVEMVKCF-----PIENGLSYVVFKVTN 578
N M N + + V + + P + + K+ +
Sbjct: 335 NNHGLMQNPQNQTAKFEMQDLPQEIAKVVDKMNIGEISKAFTMVNPKDGKEVCAIVKLKS 394
Query: 579 S----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K + + ++ L I + V ++
Sbjct: 395 RINGHKATITDDYQNLKEIVLDKRREEALQKWIVEKQKHTYVRINPA 441
>gi|116492398|ref|YP_804133.1| phosphoglycerol transferase/alkaline phosphatase superfamily
protein [Pediococcus pentosaceus ATCC 25745]
gi|116102548|gb|ABJ67691.1| Phosphoglycerol transferase related protein, alkaline phosphatase
superfamily [Pediococcus pentosaceus ATCC 25745]
Length = 724
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 51/506 (10%), Positives = 137/506 (27%), Gaps = 29/506 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+ I+R + V+ + F + + F + S V +V V ++ ++
Sbjct: 123 MGILRTTDFLVFIDVIFVIAILAFGFVKIDQSKFKLMNSFAV-TVLSIGVLAANLALAYS 181
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH-GRVWGEIA 120
G++++ + +GL L + V + + + + + I
Sbjct: 182 NRSGLLTRTFDNNY---IVKYLGLQSFTLYDGV--KSFENSNKKKEAKGSQLDPIKKFIK 236
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK--MLSRTDVVGMFVGGMRPSNLL 178
+ + + K + ++ I+ K ++ +
Sbjct: 237 ENNVPANVEYKGVAKGKNVIIIHLESLQQFVINKKWKGEEITPNINKFYKDKNTLAYDNF 296
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYR------------- 225
+Q + + + A ++ + +
Sbjct: 297 FNQVGQGKTADAEMMLENSLFGLAEGSAMVTDGTTNTFQSMPALMQQNGYSTAAFHGDVA 356
Query: 226 -APEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
+ K+ + Y + + + +EQL P +
Sbjct: 357 SFWNRDNAYKSFGYQYFFSKQYYTLKKGYVSGYGMKDKLFLQQSAKYLEQLPQPFYAKLI 416
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
G + ++ ++ + + D S+ + + L K G +
Sbjct: 417 TVSNHYPYGIEKKNVSIDKWDTGDSTVDPYVQTAHYLDQSIGELLNYLKKTGLYNKSTIM 476
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
+G +N KP+ + K + + +D +
Sbjct: 477 MYGDHYGISNNHKPAIAKILGLKGVTNYDLAMFQKVPFMIHSPGLKGGVNHNYSGEIDVM 536
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
++ I P G D+ K+ I F + A +
Sbjct: 537 PTLLNLLGIKTPGAYQFGHDINSKQYNQIVAFRNGDFVSKKYTKYGGDLYLTATGE---- 592
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDW 490
Q+ + PA+ ++++++ V K+
Sbjct: 593 --QVTDETPAQKQEVKKIQDYVNKEL 616
>gi|296313595|ref|ZP_06863536.1| hypothetical protein NEIPOLOT_00406 [Neisseria polysaccharea ATCC
43768]
gi|296839829|gb|EFH23767.1| hypothetical protein NEIPOLOT_00406 [Neisseria polysaccharea ATCC
43768]
Length = 288
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + S +LF+ T+ +V QK+ S S+
Sbjct: 5 ILTSAALLACSGSLFA----QTLATVNGQKIDSSVIDAQVAAFRAENSRA---------E 51
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
S L + +L+ ++ + Q ++ + L+ +A+ K F +
Sbjct: 52 DSPQLRRALLNQEITNTVVAQEVKRLKLDRS-AEFKDMLAKLRAEAEKSGDDKKPSFKTV 110
Query: 141 LAR 143
Sbjct: 111 WQA 113
>gi|261378344|ref|ZP_05982917.1| conserved hypothetical protein [Neisseria cinerea ATCC 14685]
gi|269145450|gb|EEZ71868.1| conserved hypothetical protein [Neisseria cinerea ATCC 14685]
Length = 252
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 6/151 (3%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
++ S + +L + + K + +A Q + +G +F + K +
Sbjct: 106 LERSETVSESELHQFYDRQTRMIKLQQVGFATEDEARQ-AQQLLLKGLSFEGLMKRYPNN 164
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNS-KVGPVQE 586
+ + S++ V P++ G Y +FK++ K Q
Sbjct: 165 EQAFDDFI----MAQQLPEPLSSRLADMNRGDVTRDPVKLGERYYLFKLSEVGKNPDAQP 220
Query: 587 KDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ + L Q + ++ + I L + +
Sbjct: 221 FELVRNQLEQGLKQEKVRLKIDALLEENGIK 251
>gi|78185901|ref|YP_373944.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium luteolum DSM
273]
gi|78165803|gb|ABB22901.1| peptidyl-prolyl cis-trans isomerase SurA [Chlorobium luteolum DSM
273]
Length = 439
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 52/505 (10%), Positives = 128/505 (25%), Gaps = 80/505 (15%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
++KA + A I ++++ P +V V VG + + S +
Sbjct: 1 MKKALHSVFAVIAVLLIMPP-------TLSAAVVADKVVAVVGSEVIFKSELDSRELMTR 53
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
L ILDN++ + + + D V
Sbjct: 54 MQY---------PGLKDEASLRSTILDNIIDQKIILTKAKIDSVSIDENAVTSM--AVDR 102
Query: 125 FHGKDNKF-SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAK 183
F +F S + RL R +D + L+ + ++
Sbjct: 103 FRQLSGRFTSKEDMERRLGRS-------VDAIRRDLADELRGQQMIETLKRKKFSSVTIG 155
Query: 184 RFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKE 243
+ Y + S + + ++ +
Sbjct: 156 YGEVMSF---YRSNQASMPNLPEEVSVSQILKF-------------------PGVNSASK 193
Query: 244 KKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQ 303
+ E+Q + + R + +
Sbjct: 194 AEALKKIQEIQKKQGSGFLSFEELARR----------------------------YSMDP 225
Query: 304 GKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
G + LG + + + K G + ++ +GY I + S
Sbjct: 226 GSAPLGGDLGFVQRGELVKPFEDAA--YALKDGHVSGIVETRYGYHIIQRLGREGSSIHV 283
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
+ + +A+ + ++ +M + + + LV +G
Sbjct: 284 RHILVAFERSGSDDGEAAAFLDAIRSKVLAGKVDFATMAGSYSDDPVSASLGGLVLASGT 343
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTV--ALPDGSYMWVQIKESIPARDRKLEE 481
K + + + + + + +S+ + D + ++ + I E+
Sbjct: 344 AGKYLDPSMLRPQLRDIVNALRTPGDISRPTKITPPKGDPFFGIFRLNDRIVPHVLDPEK 403
Query: 482 VLTDVKKDWKTVKTAEEVSSKANQL 506
+++ K E + L
Sbjct: 404 DYPLLEQLALDNKKQELFDAWVKGL 428
>gi|77459920|ref|YP_349427.1| trigger factor [Pseudomonas fluorescens Pf0-1]
gi|119370921|sp|Q3K9W8|TIG_PSEPF RecName: Full=Trigger factor; Short=TF
gi|77383923|gb|ABA75436.1| trigger factor [Pseudomonas fluorescens Pf0-1]
Length = 436
Score = 39.5 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 36/108 (33%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ +V G + + ++
Sbjct: 298 NPIEVPKALLSNEVDRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDEARVREMIQEMASAYQEPEQVVSWYYKNEQQLNEVRSVVLEEQ 405
>gi|331086426|ref|ZP_08335506.1| hypothetical protein HMPREF0987_01809 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406192|gb|EGG85715.1| hypothetical protein HMPREF0987_01809 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 246
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 9/75 (12%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + V +++ + + + ++ L+ L+S
Sbjct: 2 SNEVLAVVAGKEITNAELDAFLQNAPREQQA---------YVTNPQFRQQYLEQLISLHL 52
Query: 99 LDQFIEDIGLEADHG 113
Q ED LE
Sbjct: 53 FAQAGEDAKLEETEE 67
>gi|160878273|ref|YP_001557241.1| hypothetical protein Cphy_0113 [Clostridium phytofermentans ISDg]
gi|160426939|gb|ABX40502.1| hypothetical protein Cphy_0113 [Clostridium phytofermentans ISDg]
Length = 377
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 9/132 (6%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG----- 84
+ + TV++V V + + + I + G V S G
Sbjct: 68 VPEVPAQEKQGKTVLTVNNLTVSYEEAVLYLQSRKEEIEELYGKDVWSLVVDEDGTTYEQ 127
Query: 85 -LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
L + + + + E++G+ + + FS +
Sbjct: 128 LLKDSVYEEIEYLMLVCSKAEELGITLSEDELLDA---DEFTADFTSNFSPEALDYYNVN 184
Query: 144 EGINEKEYIDHY 155
+G+ K Y D+
Sbjct: 185 KGVVNKIYRDNM 196
>gi|323467068|gb|ADX70755.1| IS204/IS1001/IS1096/IS1165 family transposase [Lactobacillus
helveticus H10]
Length = 443
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 24/279 (8%), Positives = 66/279 (23%), Gaps = 14/279 (5%)
Query: 82 SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF--------S 133
S + ++++ L + + +++G+ V I F + +
Sbjct: 110 SQAIKQQVMIQLTTNESQIDIAKELGI--SDWTVRRVIFNLDQFFKPNYHWLPRHIAFDD 167
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + +H T + + + A R +
Sbjct: 168 FKSGRFAPSGMSMILMNIENHRTIDIILSRRNRYLRNYFLRYDRAARLAVRTVTVDLYTP 227
Query: 194 YIVLNNRHVPAIADPSNAV---LTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISN 250
Y L + P ++ + K +A + + K+ ++
Sbjct: 228 YRHLIHELFPHAIIIADHFHVVAQAYRALNKIRVKAMNQAGNGSHQWRALKHFWKLILTP 287
Query: 251 DELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDI 310
L + F T + V ++ + + + + LA
Sbjct: 288 AGLLKYDNYWSRRNFGYTQLTDVE-VIQRLLAFNDDLKQAYRYYQDLILAINHRSKDELN 346
Query: 311 SLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
L + +P + +
Sbjct: 347 HLLAIKWTQLPQSLQKVQRTLRRHRKEIITSFKYGDYTN 385
>gi|313622749|gb|EFR93091.1| foldase protein PrsA [Listeria innocua FSL J1-023]
Length = 291
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 2/231 (0%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + E ++ I + +DV K V
Sbjct: 34 DVTQDELYDAMKDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFKEYKSQYGDQFSAVLA 93
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ K L + + + D+ L+E + D +KA +
Sbjct: 94 QSGLTEKSFKSQLKYNLLVQKATEANADTSDKALKEYYKTWQPDITVSHILVADENKAKE 153
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
V + K+G F D+ K T ++ ++ + P
Sbjct: 154 -VEQKLKDGAKFADLAKEYSTDTATKENGGQLAPFGSGKMDPAFEKAAYALKNKGDISAP 212
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + ++ +KDK + + ++ +++ LK +Y
Sbjct: 213 VKTQYGYHIIQMDKPATKTTFDKDKKAVKESYLASQLTTENMQKTLKKEYK 263
>gi|254281870|ref|ZP_04956838.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
gi|219678073|gb|EED34422.1| conserved hypothetical protein [gamma proteobacterium NOR51-B]
Length = 294
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 11/110 (10%), Positives = 29/110 (26%), Gaps = 5/110 (4%)
Query: 62 QELGMISQKIGFVVNSERARSV-----GLDKKILDNLVSGATLDQFIEDIGLEADHGRVW 116
Q + Q+ + ++++D V L + +GL +
Sbjct: 40 QLIAFYQQQFRIPDSINATERFMTLPDKARQQVIDQWVQEEVLYREALRLGLLEGDTVIR 99
Query: 117 GEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVG 166
+A+ F + ++E +S + +
Sbjct: 100 KRLAQKMRFIAEAEAVPALDITPADLSAYVDEHRDRYRTPAQISFSHLYF 149
>gi|330972590|gb|EGH72656.1| trigger factor [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 436
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 10/108 (9%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ + G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ + RV I + + + + + + +
Sbjct: 358 DLKPNDARVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 405
>gi|145500938|ref|XP_001436452.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403591|emb|CAK69055.1| unnamed protein product [Paramecium tetraurelia]
Length = 1204
Score = 39.5 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 16/202 (7%), Positives = 55/202 (27%)
Query: 50 KVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE 109
+ F + N + I Q+I +++ L+++ D ++ + E +
Sbjct: 76 PLTFERYQNITRMTEIPIRQQISTPQPPQKSILERLNEQEEDKMIRELIDNYKPEQYDVM 135
Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
++ ++ E +FS+ + + + + + +
Sbjct: 136 MENDQLEIERQNDEAHANSMKQFSYQDYSPQRMNLIKKHQHHHHKSNPSHLKNNQRYDEQ 195
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
+ L Y+ + S + +++ ++
Sbjct: 196 KQLYMQQLEYKGDINQELHTDRGKYLRKFRLANKNLNKVSQEDFRKTIKQFNKLDDYAQF 255
Query: 230 KRISYILFDVHEKEKKIEISND 251
+ + L+ K +
Sbjct: 256 YKQTPNLYMQLNKSSHQQQIFQ 277
>gi|325662683|ref|ZP_08151280.1| hypothetical protein HMPREF0490_02020 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471022|gb|EGC74249.1| hypothetical protein HMPREF0490_02020 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 246
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 9/75 (12%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ + V +++ + + + ++ L+ L+S
Sbjct: 2 SNEVLAVVAGKEITNAELDAFLQNAPREQQA---------YVTNPQFRQQYLEQLISLHL 52
Query: 99 LDQFIEDIGLEADHG 113
Q ED LE
Sbjct: 53 FAQAGEDAKLEETEE 67
>gi|296162711|ref|ZP_06845496.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
Ch1-1]
gi|295887027|gb|EFG66860.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
Ch1-1]
Length = 250
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 10/111 (9%), Positives = 29/111 (26%), Gaps = 20/111 (18%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ +V + + V S FI + G + +++ +V
Sbjct: 2 TAIVRIDDEVVDVSEFIR--------------------LLKLTGQFESLIEQIVRDKLTV 41
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+ G+ + + G + ++ L + +
Sbjct: 42 HAAKKQGITVSADEIQQRADQFRRVRGLHRATDMNQYLDALNVSLDEFEAF 92
>gi|303310495|ref|XP_003065259.1| hypothetical protein CPC735_044840 [Coccidioides posadasii C735
delta SOWgp]
gi|240104921|gb|EER23114.1| hypothetical protein CPC735_044840 [Coccidioides posadasii C735
delta SOWgp]
Length = 1126
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 56/578 (9%), Positives = 154/578 (26%), Gaps = 23/578 (3%)
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGA-TLDQFIEDI-GLEADHGRVWGEIARSPLF 125
++I + E ++ +L+ V + L Q + G+ + + R
Sbjct: 323 QERIRDSFDEEIIKATQ-KITVLEGEVERSDALYQDADSACGIAVN-------LVREAKS 374
Query: 126 HGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRF 185
S SR + E + + + M+ Q
Sbjct: 375 ELDTLHHSKKEIQSRYDSDVQERHELQATQRTIRDHIKAAEVRIEDMKQQIAQEIQRLED 434
Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
+ A+ N L + + + + + K+++
Sbjct: 435 INGGSKAQRLSELEEMNAAVEAVRNRHLEHKKDISRLQREIVQAENKVKDTGEPITKQRQ 494
Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGK 305
+ K++ + + T+ +L+ Q E + + + L + Q
Sbjct: 495 EIHQAEHHLRILMKDRLQQENALPETMSKLIRAIQGENSFCQKPIGPLGIHVTLLKPQWS 554
Query: 306 SLSDISLGSFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSF 364
S+ + S G+ ++ + + + ++ D T I S +P
Sbjct: 555 SILEKSFGNTLSGFVVTSKRDMNILSGIMQRVDCTFPIFIGNEAGTMDTSAYEPETKFDT 614
Query: 365 QEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS-IDLPLVDFAG 422
I N +R E +E+ + M + + + + D
Sbjct: 615 ALRILKIDNDLVRRQLIINHSIEQMLLIEDLREASSVMFTNAPPKNVRRCYCIDARDRRR 674
Query: 423 KDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY-----MWVQIKESIPARDR 477
G P + L + + + +++
Sbjct: 675 GIHLGFSRTGDPTQSPLGAYTGRARMKTDIEMQIRMQHDVINTLKDALRELESEHRNALN 734
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK--NFRD-IGKNLGASLLTTNQI 534
L++ + + + + KA + + + + + D L +L +
Sbjct: 735 NLQKCKQALVRHERRERDLHLEVQKAEDFIEQLKEAIERDSVEDGRLDWLKVALTESEDD 794
Query: 535 NRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYL 594
R+ + G + + + + + ++ + +
Sbjct: 795 KRVAEASYEDGINALDAMMEKLKSIKRELAAKDAEIVAIDRKVRMLESEESRASARRRKA 854
Query: 595 TQMMNKDLLDSVIAYLKSQYSVTVH-DNLIQRYLDGEK 631
N + V A ++ + + + + R +D +
Sbjct: 855 LDEKNAAI-SQVEAAIRDKIEIERNRQETVARVIDFSE 891
>gi|312961790|ref|ZP_07776288.1| Trigger factor [Pseudomonas fluorescens WH6]
gi|311284049|gb|EFQ62632.1| Trigger factor [Pseudomonas fluorescens WH6]
Length = 436
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 36/108 (33%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ +V G + + ++
Sbjct: 298 NPIEVPKALLSNEVDRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVVLGLVVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDEDRVREMIQEMASAYQEPEQVVAWYYKNDQQLNEVRSVVLEEQ 405
>gi|301631501|ref|XP_002944836.1| PREDICTED: probable parvulin-type peptidyl-prolyl cis-trans
isomerase-like [Xenopus (Silurana) tropicalis]
Length = 262
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 46/131 (35%), Gaps = 1/131 (0%)
Query: 488 KDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGY 546
K++K E +A ++ + F DI K + + +
Sbjct: 132 KEYKVSHILVEKEDEAKSIIASIKQGSAKFEDIAKKQSKDPGSGARGGDLDWANPNSYVS 191
Query: 547 DGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSV 606
+ + + P+++ + V ++ + + + ++++ +TQ + + L
Sbjct: 192 EFTEAMLKLKKGEMTAEPVKSQFGWHVIRLDDERQAQLPKQEEVKPQITQQLQQQKLGQF 251
Query: 607 IAYLKSQYSVT 617
L+++ V
Sbjct: 252 QENLRTKAKVE 262
Score = 38.7 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + + A+ + + V + VP + L ++ G + E
Sbjct: 5 LLSGLVATAVWGAVALPVAAQNLAIVNGKPVPKER-----AELLKQQVERSGRPITPE-- 57
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
++ +I + +++ Q + GLEA
Sbjct: 58 ----IEGQIKEEVIAREIFLQEAKKRGLEASKD 86
>gi|253567245|ref|ZP_04844695.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
gi|251944076|gb|EES84595.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_2_5]
Length = 456
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 30/287 (10%), Positives = 74/287 (25%), Gaps = 23/287 (8%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ + + ++ + K ED KR + E +
Sbjct: 161 RYFKELPQDSIPYVPTQVEVQIITQQPKIPVAEIEDVKRRLREYTDRINKGESDFST-LA 219
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ A K + + + F D V G ++ I++
Sbjct: 220 LLYSEDRGSAIKGGETGFMGKGQMVPEYANVAFNLQDTKKISKIVESEYGFHIIQLIEKR 279
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ + + V + K +E +++ + + + + F L T
Sbjct: 280 GDRINTRHILLKPKV-----SDKELDEANARLDSIANDIRSDKFTFDQAASALSQDKDTR 334
Query: 532 NQINRMDNEN--------KFFGYDGISQVFSGPVEMVKCF-----PIENGLSYVVFKVTN 578
N M N + + V + + P + + K+ +
Sbjct: 335 NNHGLMQNPQNQTAKFEMQDLPQEIAKVVDKMNIGEISKAFTMVNPKDGKEVCAIVKLKS 394
Query: 579 S----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K + + ++ L I + V ++
Sbjct: 395 RINGHKATITDDYQNLKEIVLDKRREEALQKWIVEKQKHTYVRINPA 441
>gi|227511814|ref|ZP_03941863.1| peptidylprolyl isomerase [Lactobacillus buchneri ATCC 11577]
gi|227084904|gb|EEI20216.1| peptidylprolyl isomerase [Lactobacillus buchneri ATCC 11577]
Length = 295
Score = 39.5 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 22/283 (7%), Positives = 67/283 (23%), Gaps = 31/283 (10%)
Query: 26 LIWGLS-DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
++ G+ + S S +V ++ + ++ +
Sbjct: 9 ILAGIGAGLILSACSSQSVATINGSNITKDAYYQ--------------------EMKESP 48
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
++ L ++ L+ + G + + V ++ +G F + L +
Sbjct: 49 SGQQALGQMILDKGLE---KQYGNKVKNTAVTRQLNTVKKQYG-------ASFSAFLTQN 98
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
G+ +Y + + L + + + +
Sbjct: 99 GLTASQYKRNLKEDLLLKAAIKANTKFTPGMLKQQFKHYQPKVTVNQILVSKKATAQKVI 158
Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
+ + Y + + + + + K
Sbjct: 159 DQLNAGHSFAKLATAYSTDAATKKKSGRISPFDNTNTTLDPNFKKAAFKLKTGQYTKTPV 218
Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
+ V Q+V K + + K + A +
Sbjct: 219 KTQYGYEVIQMVNHPAKGTHQNHKEALKNQIVDTKAADNNTVH 261
>gi|256556951|gb|ACU83573.1| FKBP-type peptidyl-prolyl cis-trans isomerase [uncultured bacterium
HF130_AEPn_2]
Length = 436
Score = 39.1 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 36/108 (33%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ +V G + + ++
Sbjct: 298 NPIEVPKALLSNEVDRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDEDRVREMIQEMASAYQEPEQVVAWYYKNDQQLNEVRSVVLEEQ 405
>gi|320034927|gb|EFW16870.1| DNA repair protein Rad18 [Coccidioides posadasii str. Silveira]
Length = 1126
Score = 39.1 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 56/596 (9%), Positives = 156/596 (26%), Gaps = 30/596 (5%)
Query: 57 INSWKQELGMI-------SQKIGFVVNSERARSVGLDKKILDNLVSGA-TLDQFIEDI-G 107
+ + ++I + E ++ +L+ V + L Q + G
Sbjct: 305 RARLRNLRAQMAWVQVEEQERIRDSFDEEIIKATQ-KITVLEGEVERSDALYQDADSACG 363
Query: 108 LEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGM 167
+ + + R S SR + E + +
Sbjct: 364 IAVN-------LVREAKSELDTLHHSKKEIQSRYDSDVQERHELQATQRTIRDHIKAAEV 416
Query: 168 FVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAP 227
+ M+ Q + A+ N L + +
Sbjct: 417 RIEDMKQQIAQEIQRLEGINGGSKAQRLSELEEMNAAVEAVRNRHLEHKKDISRLQREIV 476
Query: 228 EYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ + + K+++ + K++ + + T+ +L+ Q E
Sbjct: 477 QAENKVKDTGEPITKQRQEIHQAEHHLRILMKDRLQQENALPETMSKLIRAIQGENSFCQ 536
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP-DVSLADSIFSLAKKGDFTPVIHGSF 346
+ + + L + Q S+ + S G+ ++ + + + ++ D T I
Sbjct: 537 KPIGPLGIHVTLLKPQWSSILEKSFGNTLSGFVVTSKRDMNILSGIMQRVDCTFPIFIGN 596
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQ-MRITKASEKVKEDYKRLEEFLALGTSMDEIS 405
S +P I N +R E +E+ + M +
Sbjct: 597 EAGTMDTSAYEPETKFDTALRILKIDNDLVRRQLIINHSIEQMLLIEDLREASSVMFTNA 656
Query: 406 RREKIVS-IDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSY- 463
+ + + D G P + L + + +
Sbjct: 657 PPKNVRRCYCIDARDRRRGIHLGFSRTGDPTQSPLGAYTGRARMKTDIEMQIRMQHDVIN 716
Query: 464 ----MWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGK--NF 517
+++ L++ + + + + KA + + + + +
Sbjct: 717 TLKDALRELESEHRNALNNLQKCKQALVRHERRERDLHLEVQKAEDFIEQLKEAIERDSV 776
Query: 518 RD-IGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKV 576
D L +L + R+ + G + + + + + ++ + +
Sbjct: 777 EDGRLDWLKVALTESEDDKRVAEASYEDGINALDAMMEKLKSIKRELAAKDAEIVAIDRK 836
Query: 577 TNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH-DNLIQRYLDGEK 631
N + V A ++ + + + + R +D +
Sbjct: 837 VRMLESEESRASARRRKALDEKNAAI-SQVEAAIRDKIEIERNRQETVARVIDFSE 891
>gi|229591363|ref|YP_002873482.1| trigger factor [Pseudomonas fluorescens SBW25]
gi|259533637|sp|C3JYK1|TIG_PSEFS RecName: Full=Trigger factor; Short=TF
gi|229363229|emb|CAY50312.1| trigger factor [Pseudomonas fluorescens SBW25]
Length = 436
Score = 39.1 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 36/108 (33%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ +V G + + ++
Sbjct: 298 NPIEVPKALLSNEVDRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDEDRVREMIQEMASAYQEPEQVVAWYYKNDQQLNEVRSVVLEEQ 405
>gi|223040718|ref|ZP_03610986.1| ferric receptor CfrA [Campylobacter rectus RM3267]
gi|222878002|gb|EEF13115.1| ferric receptor CfrA [Campylobacter rectus RM3267]
Length = 278
Score = 39.1 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 24/292 (8%), Positives = 74/292 (25%), Gaps = 28/292 (9%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI F+ F + S + V + + + + + Q
Sbjct: 4 KISFAAFFLSFCMA-----NASQISNGIAVIIENEPITVNEVRKAAAQLQTN-------- 50
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ L+ L+ I+++ +EA + + + ++ S
Sbjct: 51 -----------EANALNLLIRDRLETAQIKNLKIEASDYELNQRLQKIAS----ESGMSA 95
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
S + +G + ++ D K + + + + + F +
Sbjct: 96 SDLRSAVLSKGGDYAQFKDDVAKTIKQEKLYQSIFADAKINISENAARAYFEQNRDLFAH 155
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
+ + + + N+ + + + D
Sbjct: 156 FTDASVTRYVASSAQLLEVARHSSPMNTNHNVHMDVLDLKSEQIPPQLRTIFQQTPDGTF 215
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
+ + E + + + + P E + + + ++ E
Sbjct: 216 TQIFQTPEGFEMFYVASKKGQTMPEFDEVRDEAMNALYKLEQDRVIGEYFNK 267
>gi|172056099|ref|YP_001812559.1| hypothetical protein Exig_0055 [Exiguobacterium sibiricum 255-15]
gi|171988620|gb|ACB59542.1| hypothetical protein Exig_0055 [Exiguobacterium sibiricum 255-15]
Length = 103
Score = 39.1 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 30/108 (27%), Gaps = 36/108 (33%)
Query: 9 SRTWVAKIFLVVLFV------PFLIWG---------LSDALFSVSGSSTVVSVGRQKVPF 53
+ + + +L + + G + V +VG +++
Sbjct: 4 VNSKYLWMLIFILLLTNFMTGAYAFMGELPKVDSPKIVQDSIGGPLEDVVATVGDEEITR 63
Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
+ + ++ G +K+ LD L+ A Q
Sbjct: 64 ADLYQTMRK---------------------GHEKETLDRLIREAVEKQ 90
>gi|309378643|emb|CBX22714.1| putative cell-binding factor [Neisseria lactamica Y92-1009]
Length = 288
Score = 39.1 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + S +LF+ T+ +V QK+ S NS
Sbjct: 5 ILTSVALLACSGSLFA----QTLATVNGQKIDSSVIDAQVAAFRAE---------NSSAE 51
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
S L + +L+ ++ + Q ++ + L+ +A+ K F +
Sbjct: 52 DSPQLRRALLNQEITHTVVAQEVKRLKLDRS-AEFKDMLAKLRAEAEKSGDDKKPSFKTV 110
Query: 141 LAR 143
Sbjct: 111 WQA 113
>gi|313636759|gb|EFS02412.1| foldase protein PrsA [Listeria seeligeri FSL S4-171]
Length = 167
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 5/120 (4%)
Query: 499 VSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPV 557
+ V + K+G+ F D+ K T + ++ ++
Sbjct: 37 ADEAKAKEVEQKLKDGEKFADLAKEYSTDTATKDNGGKLAPFGPGKMDPAFEKAAYALKN 96
Query: 558 EMVKCFPIENGLSYVVFKVTN--SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ P++ Y + ++ +K ++K Q ++ +++ LK +Y
Sbjct: 97 KGDISDPVKTQYGYHIIQMDEPATKTTFDKDKKAVKESYLQ--SQLTTENMQKTLKKEYK 154
>gi|218461597|ref|ZP_03501688.1| probable peptidyl-prolyl cis-trans isomerase protein [Rhizobium
etli Kim 5]
Length = 313
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 17/164 (10%), Positives = 39/164 (23%), Gaps = 18/164 (10%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + +++ A+ + L+ Q +
Sbjct: 34 AVVNGTAITSGDVAK-----RQAFLRLQHTKADAKTAK---------EQLIDETLKRQEV 79
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + V AR NK S + L R G+ + +S
Sbjct: 80 ARVRMSVSQQDVDASFARFSA----GNKLSVEQMSQILDRAGVGVDHFKGFIAVQMSWPR 135
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
VV G + ++ + + + +
Sbjct: 136 VVNARYGSTSRLSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIP 179
>gi|210620774|ref|ZP_03292241.1| hypothetical protein CLOHIR_00184 [Clostridium hiranonis DSM 13275]
gi|210155168|gb|EEA86174.1| hypothetical protein CLOHIR_00184 [Clostridium hiranonis DSM 13275]
Length = 339
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 35/280 (12%), Positives = 81/280 (28%), Gaps = 5/280 (1%)
Query: 343 HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMD 402
F V + E + + K Y++ +E T +
Sbjct: 62 KLRFNEVEKRAEETFYIDKNNTIENLGSDTYKKELIKYVVYEDILYRKAKEENIHVTKQE 121
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+ + + K K + + + L + V+ +
Sbjct: 122 IEDTYCSVEKFITSKFNLDDAEFKNKYADDKNKLVKSMRKSIKAYKYLDEKTRVSDSEAR 181
Query: 463 -YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
Y + R + D + + + ++AN++ + +EG F D+
Sbjct: 182 AYYDAHKDKFREGVYRDIFISTVDSSGKKLSKEEIDNAENRANEIYRKL-EEGCKFEDLE 240
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ T D E F +++ + V P+ + Y + K ++
Sbjct: 241 DEYSEDIEGTIPGGLGDLEMSFTDQKLRNKISTLKVGECIEKPLRSAYGYHIIKRVGTEE 300
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
P + + I + + +I L +Y+V + D
Sbjct: 301 EPFDKVKEEIKSMLSYKKQI---KLIESLMKEYNVEIKDK 337
Score = 38.3 bits (86), Expect = 4.1, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 5/112 (4%)
Query: 32 DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILD 91
D+ V + +K+ F+ ++ I E S K+++
Sbjct: 44 DSNIKNDSKEIVAYIDGEKLRFNEVEKRAEETF-----YIDKNNTIENLGSDTYKKELIK 98
Query: 92 NLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAR 143
+V L + ++ + + F F ++ A
Sbjct: 99 YVVYEDILYRKAKEENIHVTKQEIEDTYCSVEKFITSKFNLDDAEFKNKYAD 150
>gi|317128176|ref|YP_004094458.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
cellulosilyticus DSM 2522]
gi|315473124|gb|ADU29727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacillus
cellulosilyticus DSM 2522]
Length = 293
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 4/134 (2%)
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
+A +++L LV ++Q E++G+ V +I G DN + +
Sbjct: 50 QALKDIYGEEVLTGLVQLRIIEQKAEELGI--TDEDVQQQIDDLKEGVGIDN--DEEFYN 105
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
+++ E + + + L + G L + + + Y
Sbjct: 106 FLASQQVRGEDDLKERFLSHLVLEHLAGHVGDPTDEDLQELYEKGEEVEASHILVYTEEE 165
Query: 199 NRHVPAIADPSNAV 212
+ +
Sbjct: 166 ALDIYERIENGEDF 179
>gi|307243271|ref|ZP_07525442.1| PPIC-type PPIASE domain protein [Peptostreptococcus stomatis DSM
17678]
gi|306493399|gb|EFM65381.1| PPIC-type PPIASE domain protein [Peptostreptococcus stomatis DSM
17678]
Length = 255
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 9/78 (11%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ + VG + + + G Q+ + K+IL ++++
Sbjct: 5 NFLAKVGDKVITQEDLEAAVASLDGYQRQQF---------DNEEGRKRILADMINQELFY 55
Query: 101 QFIEDIGLEADHGRVWGE 118
+ ++ D V
Sbjct: 56 LDAIENKMDQDEIFVNEM 73
>gi|261886000|ref|ZP_06010039.1| foldase protein PrsA [Campylobacter fetus subsp. venerealis str.
Azul-94]
Length = 268
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
++ + +V Q + ++ +G + + K +LD ++
Sbjct: 18 NAAVLATVNGQNITDED-----------LAPVLGPHGSETSNVPADMKKNLLDRVIERKL 66
Query: 99 LDQFIEDIGLEADHG 113
+ + G+E D
Sbjct: 67 MLDQAKKDGIEKDDE 81
>gi|195383918|ref|XP_002050672.1| GJ22287 [Drosophila virilis]
gi|194145469|gb|EDW61865.1| GJ22287 [Drosophila virilis]
Length = 1051
Score = 39.1 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 26/239 (10%), Positives = 68/239 (28%), Gaps = 5/239 (2%)
Query: 379 KASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ 438
+ + ED E L ++ +LP +D + E+ E
Sbjct: 410 RKNPNTTEDQPSPEMNLRRRLTIATAEDNLPDDGEELPPLDDDEYSEEEIEIEEEIEVEI 469
Query: 439 LLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
+ ++ + + + K + + + + + T K +E
Sbjct: 470 SDLEESDDNVAITASYVPETFEQLSAMFRPKTELKTSEATETLAAKEPEPEPTTDKLEQE 529
Query: 499 VSSK-----ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ A + +EY + ++ + + D ++ ++
Sbjct: 530 AELEPEATTATDIYVEYEDGDIEDYEHDESDDELISDEEEDEISDVDDAELMSRLEAKYG 589
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
P + + P + ++ K E D F L Q + + ++ L+
Sbjct: 590 RLPAKEYESDPDSDDPTWTQIKPKQPTGAQSAEDDLFEQQLRQANAEMINENYAKALRD 648
>gi|281492060|ref|YP_003354040.1| alpha-1,2-mannosidase [Lactococcus lactis subsp. lactis KF147]
gi|161702317|gb|ABX75773.1| Alpha-1,2-mannosidase [Lactococcus lactis subsp. lactis KF147]
Length = 717
Score = 39.1 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 36/402 (8%), Positives = 97/402 (24%), Gaps = 26/402 (6%)
Query: 73 FVVNSERARSVGLDKKILDNLVSGA---TLDQFIEDIGLE----------------ADHG 113
N + + L +I L+ L +++GL+ D
Sbjct: 101 SNFNPTQLKITQLRYQITSQLIPSMYGGILSMNYQNLGLKDNGLMLHLPGSYELQQLDDY 160
Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
+ I ++ F ++ A + + + V
Sbjct: 161 SLELSIINFAGCEDENFTF----YLKFTADQPFVLSGNLSDEDSSVRLDFKAAKQVQIHF 216
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD--PSNAVLTQWFEKYKDNYRAPEYKR 231
++ + + E + + + + S + ++ + Y+
Sbjct: 217 ATSFISKEQAALNLEREQDNSAETYLENAESAWNNLFSRIEIEHHNQQEVSTFYHNLYRS 276
Query: 232 ISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLK 291
+ ++ +I D +K + T + A + + +
Sbjct: 277 FLFPQTFYEFDQEHQKIHYDTSSKTVKKGPLYTNNGFWDTFRTVYPLYSLIAVDEYGDML 336
Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
+G A + D +AD+ + + +
Sbjct: 337 EGFLNSYRATGFLPKWLSPDERGLMPGTLIDAVIADAASKNIRPDLMPEFLEAMKKGATS 396
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRL-EEFLALGTSMDEISRREKI 410
N + +K + + + +A T EIS
Sbjct: 397 QSENSNYGRRGTKDYLKLGYVPLTHHESVNHTLDYAFSDYCISQVAKQTGDKEISDFYAH 456
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ + + + + A ++ L +G+D
Sbjct: 457 QAKNYQNIFDSETGFMRAKDADGNFRPDFLDIRWGRDYAEGS 498
>gi|218671035|ref|ZP_03520706.1| probable peptidyl-prolyl cis-trans isomerase protein [Rhizobium
etli GR56]
Length = 314
Score = 39.1 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 17/164 (10%), Positives = 39/164 (23%), Gaps = 18/164 (10%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + + +++ A+ + L+ Q +
Sbjct: 35 AVVNGTAITSGDVAK-----RQAFLRLQHTKADAKTAK---------EQLIDETLKRQEV 80
Query: 104 EDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
+ + V AR NK S + L R G+ + +S
Sbjct: 81 ARVRMSVSQQDVDASFARFSA----GNKLSVEQMSQILDRAGVGVDHFKGFIAVQMSWPR 136
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
VV G + ++ + + + +
Sbjct: 137 VVNARYGSTSRLSNYDLVSRMMQNNKQKPVTTEYMLQQIIFVIP 180
>gi|21220873|ref|NP_626652.1| sugar transport permease [Streptomyces coelicolor A3(2)]
gi|256787973|ref|ZP_05526404.1| sugar transport permease [Streptomyces lividans TK24]
gi|289771860|ref|ZP_06531238.1| sugar transport permease [Streptomyces lividans TK24]
gi|6562807|emb|CAB62738.1| putative sugar transport permease [Streptomyces coelicolor A3(2)]
gi|289702059|gb|EFD69488.1| sugar transport permease [Streptomyces lividans TK24]
Length = 414
Score = 39.1 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV 43
ML+ +R+ R + + L ++ V F +W D L + S+ V
Sbjct: 30 MLDGMRRNMRQYGMLMALGLIVVLFAVWSDGDLLLPRNVSNLV 72
>gi|307176878|gb|EFN66219.1| Membrane metallo-endopeptidase-like 1 [Camponotus floridanus]
Length = 780
Score = 39.1 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 32/381 (8%), Positives = 94/381 (24%), Gaps = 8/381 (2%)
Query: 61 KQELGMISQKIGFVVNSERARS-VGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEI 119
++ + ++ E + +++ N +S + G + + +I
Sbjct: 224 ERRKETLETTTSQIITEETSDEGDKTAQQVYANYISEVA-RAIAKARGADVSEEHINKDI 282
Query: 120 ARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLL 179
F K + + + L + + + D ++ + + ++ +
Sbjct: 283 EDMIKFQVKLAQITIESEEDALELTLNDFQVWYDEKESKIANSKIDWVYKITELFDEAHV 342
Query: 180 DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDV 239
E +S DY + + + W R Y +
Sbjct: 343 SVNGDLNLEVQSPDYFEALVSLLDETSKRTIVNYIHWQFLSTMIEATTSEMRNLYYTW-- 400
Query: 240 HEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
++ +I S +E E E++ E + ++ E + + F
Sbjct: 401 --EKWEISESEEEEDDEDEEDDEDEEEESEEEWRESQCMSKLELHDILAYEYVKRHFSDN 458
Query: 300 AEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPS 359
+ + + D + I + D G + + I
Sbjct: 459 ITKTAEDMVDDIQKEV-EYQIKESDWLDEDTKDYVFGKLVNMKKFIGYPDWYRNNTIVKR 517
Query: 360 FTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVD 419
+ N + + + + + + + + + P +
Sbjct: 518 YFQGLIITNSYYENTLSYFRYRKWKQLRQIKQKGDDDDDDDIW-WMSPLTVNAFFSPWSN 576
Query: 420 FAGKDVKGKEVAAIPYKEQLL 440
+ Y
Sbjct: 577 AISLSAADFQSPFFAYSRPQA 597
>gi|189461628|ref|ZP_03010413.1| hypothetical protein BACCOP_02287 [Bacteroides coprocola DSM 17136]
gi|189431658|gb|EDV00643.1| hypothetical protein BACCOP_02287 [Bacteroides coprocola DSM 17136]
Length = 457
Score = 39.1 bits (88), Expect = 2.3, Method: Composition-based stats.
Identities = 36/371 (9%), Positives = 78/371 (21%), Gaps = 15/371 (4%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
L+ G+S + V VG + + S N G
Sbjct: 15 LLLAGVSVYAQNNVIDEVVWVVGDEAILKSDVENERLNAQYENRHFDGDPY--------- 65
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
I + L E + V E+ + + S + +
Sbjct: 66 --CVIPEELAIQKLYLHQAEIDSVMVSDQEVIQEVEQRIAWLADQIG-SKEKMEEYYNKS 122
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
+ + + + V + L R YF D I V
Sbjct: 123 ---YTQIREMLRENVKSQKTVVQMQQKIVGDIKLTPAEVRNYFSKLPQDSIPFIPTQVEV 179
Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
+++ + + R++ + + E
Sbjct: 180 QIITQEPKISEEEIERVKSQLREYADRVNKGETSFSTLARFYSEDPGTARRGGEGGFTGR 239
Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVS 324
+ + + G QL E++G ++ + K D+
Sbjct: 240 GELVPEFANVVFNLTDTKKVSKVFETEFGYHIAQLIEKRGDRVNYRHILLRPKVDQKDID 299
Query: 325 LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKV 384
A + + + + A
Sbjct: 300 AALARLDSIADDIRKNKFTFDDAATWISQDKDTRNNHGLLANPQSSTSRFEMQQLAGLIS 359
Query: 385 KEDYKRLEEFL 395
++ K +E
Sbjct: 360 QDVAKVVENMQ 370
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 31/309 (10%), Positives = 76/309 (24%), Gaps = 33/309 (10%)
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
V+ V + + I + +E EE + +
Sbjct: 140 VVQMQQKIVGDIKLTPAEVRNYFSKLPQDSIPFIPTQVEVQIITQEPKISEEEIERVKSQ 199
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYK--------EQLLFRVFGKDDPLSK 452
+ E + R + + G + VF D
Sbjct: 200 LREYADRVNKGETSFSTLARFYSEDPGTARRGGEGGFTGRGELVPEFANVVFNLTDTKKV 259
Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
G ++ I++ + + + V K + ++ + + + K
Sbjct: 260 SKVFETEFGYHIAQLIEKRGDRVNYRHILLRPKV-----DQKDIDAALARLDSIADDIRK 314
Query: 513 EGKNFRDIG----------KNLGASLLTTNQINRM--DNENKFFGYDGISQVFSGPVEMV 560
F D N G + +R D V + + +
Sbjct: 315 NKFTFDDAATWISQDKDTRNNHGLLANPQSSTSRFEMQQLAGLISQDVAKVVENMQIGEI 374
Query: 561 KC----FPIENGLSYVVFKVTNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
+ + K+ N K ++ + + +T +++ L I +
Sbjct: 375 SKPFTMINSKGKQVCAIVKLKNRIDGHKATITEDYQRLKAMVTAKRSEEKLQKWIVEKQK 434
Query: 613 QYSVTVHDN 621
V ++ +
Sbjct: 435 NTYVRINPD 443
>gi|313617659|gb|EFR89948.1| foldase protein PrsA [Listeria innocua FSL S4-378]
Length = 291
Score = 39.1 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 2/231 (0%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ + E ++ I + +DV K V
Sbjct: 34 DVTQDELYDAMKDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFKEYKSQYGDQFSAVLA 93
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ K L + + + D+ L+E + D +KA +
Sbjct: 94 QSGLTEKSFKSQLKYNLLVQKATEANADTSDKALKEYYKTWQPDITVSHILVADENKAKE 153
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFP 564
V + K+G F D+ K T ++ ++ + P
Sbjct: 154 -VEQKLKDGAKFADLAKEYSTDTATKENGGQLAPFGSGKMDPAFEKAAYALKNKGDISAP 212
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++ Y + ++ +KDK + + ++ +++ LK +Y
Sbjct: 213 VKTQYGYHIIQMDKPATKTTFDKDKKAVKESYLASQLTTENMQKTLKKEYK 263
>gi|224534873|ref|ZP_03675442.1| conserved hypothetical protein [Borrelia spielmanii A14S]
gi|224513813|gb|EEF84138.1| conserved hypothetical protein [Borrelia spielmanii A14S]
Length = 500
Score = 39.1 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 24/209 (11%), Positives = 53/209 (25%), Gaps = 16/209 (7%)
Query: 10 RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVGRQKVPFS---SFINSW 60
+ ++ + F G+ D S S Q + + F
Sbjct: 20 KKVGMWGIFALILIVFGFIIAPLLPGMFDNAHSSGLK--FGSYKGQPIYYEKDNKFAKYV 77
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ S+ G N V I+ + +
Sbjct: 78 NYYSNLYSRLQGNAKNIN--IDYNAWYLAFMKYVEDVAFLDLIKKYNFYISKEMLDKNLL 135
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
RSP + + FS + + + D + + +++ + + L +
Sbjct: 136 RSPEYLDPNGNFSSKRYNKV---SDYRKVKIYDDMVESILFSNIKTFLNSNLIFPDSLFN 192
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPS 209
K R + Y+ L+ + S
Sbjct: 193 MIKDMSTVERHISYLSLSYHNFSNKEAMS 221
>gi|301299775|ref|ZP_07206018.1| PPIC-type PPIASE domain protein [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852630|gb|EFK80271.1| PPIC-type PPIASE domain protein [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 206
Score = 39.1 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 30/134 (22%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
I G+ + S TV + K+ S + +S K+
Sbjct: 8 AISGIVLTFGLAACSKTVATTSGGKITESEYYSSMKKTSSG------------------- 48
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
K++L ++ L+ ++ G + +V + +G F S LA+
Sbjct: 49 -KQVLQQMILNKVLE---KEYGSKVSDKKVNEQYNTYKKQYGSS-------FDSVLAQND 97
Query: 146 INEKEYIDHYTKML 159
+ + + L
Sbjct: 98 MTKSSFKQEIRSNL 111
>gi|91202462|emb|CAJ72101.1| similar to peptidyl-prolyl cis-trans isomerase (survival protein
surA precursor) [Candidatus Kuenenia stuttgartiensis]
Length = 328
Score = 39.1 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 25/196 (12%), Positives = 52/196 (26%), Gaps = 6/196 (3%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
V+L +L G D L + V + I + K ++
Sbjct: 9 VMLSCSYLFCG-EDVLNKNNLGFIRAVVDEAIITQDEVIKRSAAAIREARSKYSEEEFAK 67
Query: 79 RARSVGLDKKILDNLVSGATLDQFIED-IGLEAD-HGRVWGEIARSPLFHGKDNKFSHDV 136
+ + L+ L+ L + + G + V E+ ++ S
Sbjct: 68 NIEK--ILEYTLEELIDRKLLVKEAQKVFGTDISMMDEVQKELDYFLKGAVENVG-SLSK 124
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
F +GIN E + + ++ V L + +
Sbjct: 125 FYEIAESQGINPIERKTELKEDIMIDKIIKENVNNKVKVPPKLLRRYYMENMDEFCQKKE 184
Query: 197 LNNRHVPAIADPSNAV 212
+ RH+ +
Sbjct: 185 IKLRHIMIKFSTHDND 200
Score = 38.3 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 27/254 (10%), Positives = 74/254 (29%), Gaps = 7/254 (2%)
Query: 370 DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKE 429
+ + I + + + + E+ K ++ + + + +
Sbjct: 74 EYTLEELIDRKLLVKEAQKVFGTDISMMDEVQKELDYFLKGAVENVGSLSKFYEIAESQG 133
Query: 430 VAAIPYKEQLLFRVFGKDDPLSK-DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
+ I K +L + ++ V +P ++ +K ++ + K
Sbjct: 134 INPIERKTELKEDIMIDKIIKENVNNKVKVPPKLLRRYYMENMDEFCQKKEIKLRHIMIK 193
Query: 489 DWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDG 548
+ + A +++ G++F + ++ +E + +
Sbjct: 194 FSTHDNDKAKTYAFAEKIMT-LLSTGEDFSSVARSYSEGPNAEKGGEWSFDEIQGLRKEL 252
Query: 549 ISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP----VQEKDKFISYLTQMMNKDLLD 604
V S E+ + Y +FKV + +D+ L + L
Sbjct: 253 RDVVNSLKDNEY-SKITESPVGYHIFKVELIRPEVVKKFEDVQDEIYKKLYREEIGRLKK 311
Query: 605 SVIAYLKSQYSVTV 618
I L+ + V
Sbjct: 312 KYILDLREDAFIKV 325
>gi|312194536|ref|YP_004014597.1| hypothetical protein FraEuI1c_0649 [Frankia sp. EuI1c]
gi|311225872|gb|ADP78727.1| hypothetical protein FraEuI1c_0649 [Frankia sp. EuI1c]
Length = 254
Score = 39.1 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 10/121 (8%), Positives = 31/121 (25%), Gaps = 12/121 (9%)
Query: 9 SRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMIS 68
R + + ++ + + G + V + + + + + +
Sbjct: 2 KRARMLGAVVGLVAL--AVAGCTSHAG------AAAQVDDKTIGTDTVRGIVDRGMSAYT 53
Query: 69 QKIGFVVNSERARSV----GLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
++ ++ L ++ L NLV G+ +
Sbjct: 54 AFAAAHPDAASQQTPVTRDDLQRRTLGNLVEYQLDLTEARKRGITLSPQEADAYYQSYAI 113
Query: 125 F 125
F
Sbjct: 114 F 114
>gi|254409963|ref|ZP_05023743.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
gi|196182999|gb|EDX77983.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
Length = 1525
Score = 39.1 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 16/247 (6%), Positives = 61/247 (24%), Gaps = 14/247 (5%)
Query: 2 LEIIRKASRTWVAKIFLVVLF-----VPFLIWGLSDALFSVSGSSTVVSVGRQ-----KV 51
L+ I +++ + + ++ + W + ++ + + +V
Sbjct: 317 LDHIHNNTKSTILLCLVALIIATGVGISTAHWIIQPIQRLNQAANAIA--NGEWEQKIEV 374
Query: 52 PFSSFINSWKQELGMISQKIGFVVNS--ERARSVGLDKKILDNLVSGATLDQFIEDIGLE 109
P ++ + S ++ ++ + ++ + + L + +
Sbjct: 375 PRNAELGSLSAAFNQMAAQLNQSFATLKDQNEQMNRLNEALAKSERQLAQILETVPVAIV 434
Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
+ F+ D D + V +
Sbjct: 435 VVDAQGRFHYTNDKAQQFIGGAFTPDAIADNFCAVHHWYIAGTDQFYPTEELPIVRALQG 494
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
N+ + Q + I+ + N + + + + + E
Sbjct: 495 QRSIVHNIEIHQDDQIIPIETWSKPILDEQGEIIYAIAVLNDITDRKKAEAERMHFTQEL 554
Query: 230 KRISYIL 236
+ +
Sbjct: 555 EFKDHQN 561
>gi|312864592|ref|ZP_07724823.1| putative foldase protein PrsA [Streptococcus downei F0415]
gi|311099719|gb|EFQ57932.1| putative foldase protein PrsA [Streptococcus downei F0415]
Length = 357
Score = 39.1 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 74/248 (29%), Gaps = 12/248 (4%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ Y R + A ++ E + + V + + +E A
Sbjct: 89 DLYNRQKGNQATKEALLETILSDILEDKYGKKVSQDEVNKQYQESAQKAGSNFSSMLDQY 148
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
S + + L ++ ++KL+ + D D + SKAN
Sbjct: 149 GYTQDSYKNLIRLQLLQNYALKTAAKKDLTEKKLKSLYKDYNPDITISFVKTDDESKANS 208
Query: 506 LVLEYSKEGKNFRDIGKNLGASLL---TTNQINRMDNENKFFGYDGISQVFSGPVEMVK- 561
L + + +G +F I K+ + + + D F + V
Sbjct: 209 LHDQATADGADFSQIVKDNNGQENVSFDSGDKYDSNKSSSLPPEDVQKAAFKLDKDGVSD 268
Query: 562 ---CFPIENGLSYVVFKVTNSKVGPVQ---EKDKFISYLTQMM--NKDLLDSVIAYLKSQ 613
+N SY V KVT K + N VI+ L +
Sbjct: 269 TIKVQETDNSTSYYVVKVTAKNEKNPDWKNYKKRLTDIYVNQKNSNSSFKTQVISDLLKE 328
Query: 614 YSVTVHDN 621
Y+VTV D
Sbjct: 329 YNVTVKDK 336
>gi|110833403|ref|YP_692262.1| peptidyl-prolyl isomerase [Alcanivorax borkumensis SK2]
gi|110646514|emb|CAL15990.1| peptidylprolyl isomerase [Alcanivorax borkumensis SK2]
Length = 269
Score = 39.1 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 17/83 (20%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
+++VG Q + + + +A+ LV L Q
Sbjct: 16 PLITVGDQTITQDEIAQEM---------QYHPATDLNQAQHNAAR-----ALVVRQLLLQ 61
Query: 102 FIEDIGLEAD---HGRVWGEIAR 121
+ +GL D V +
Sbjct: 62 QAQTMGLAIDCEGDEAVISALLE 84
>gi|313204245|ref|YP_004042902.1| ppic-type peptidyL-prolyl cis-trans isomerase [Paludibacter
propionicigenes WB4]
gi|312443561|gb|ADQ79917.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Paludibacter
propionicigenes WB4]
Length = 451
Score = 39.1 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 23/225 (10%), Positives = 66/225 (29%), Gaps = 14/225 (6%)
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIK 469
+ + + A + + + + F DP V G ++ I+
Sbjct: 214 LARLYSEDSESAKRGGELGFMGRGQLVPEFSAVAFNLLDPKKVSRIVQTEFGFHIIQLIE 273
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
+ + + + + + K + S ANQ+ + K + + ++
Sbjct: 274 KRGDRINCRHILLKPRIAAE-DKEKAIHVLDSIANQIREDKITFEKAVLNFSMDKNTAMN 332
Query: 530 TTNQINRMDNEN----KFFGYDGISQVFSGPVEMVK-----CFPIENGLSYVVFKVTNS- 579
+N + + + +V+ V V N V K+ +
Sbjct: 333 AGLMLNEKSGTSKFEYQDLPPEVAKKVYDMNVGEVSKPFSMIDKSTNKEVVAVVKLKSKV 392
Query: 580 ---KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K + ++ ++ + + IA + + +++
Sbjct: 393 DVHKANLTDDYQMLRNFYESKKKQEFISTWIAKKQKETYISIDPA 437
>gi|150389495|ref|YP_001319544.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
metalliredigens QYMF]
gi|149949357|gb|ABR47885.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Alkaliphilus
metalliredigens QYMF]
Length = 249
Score = 39.1 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 25/156 (16%), Positives = 50/156 (32%), Gaps = 6/156 (3%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
I +S + + + + KA ++ E KEG +F + +
Sbjct: 95 ITDSEITNYYTENKAQFEQPAQVQASHILVDSEEKAQGVLAEL-KEGLSFEEAATKHSSC 153
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ + F+ V+ V P++ Y + KV + K +
Sbjct: 154 PSNAKGGDLGLFAQGQMVPEFEEAAFNMEVDTV-SEPVKTQFGYHIIKVVDQKPAQEKSL 212
Query: 588 DKFISYLTQMMNKDLLDSV----IAYLKSQYSVTVH 619
+ L Q + I LK Q++VT++
Sbjct: 213 AEVKDQLNQQLLSQKQQKAYFDKIEALKGQFTVTLN 248
>gi|88857634|ref|ZP_01132277.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
tunicata D2]
gi|88820831|gb|EAR30643.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Pseudoalteromonas
tunicata D2]
Length = 274
Score = 39.1 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 26/200 (13%), Positives = 62/200 (31%), Gaps = 16/200 (8%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF 73
KI + + + ++ G L S+ V VG + V N ++
Sbjct: 1 MKIIIKKISLVTVLIGSVLTLGCSEPSNEVAKVGEKVVTAQELANYFE------------ 48
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
A++ L + ++ L Q IE E ++ E+ + F+
Sbjct: 49 -FKRLDAKNTALVESAKKQYLNNLALVQAIESQT-EYSDEKLAFELFEIKKDLLLNRYFN 106
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
++ ++ E Y + + S+ V + + P++ + ++ +
Sbjct: 107 Q--YLEQVVTETDMRNYYAQNQEQYQSQQAKVSHILLRVNPADDETTRQAKYSKAVEAYS 164
Query: 194 YIVLNNRHVPAIADPSNAVL 213
I + S +
Sbjct: 165 KINTGSDFSVVAQSLSEDRV 184
>gi|313667751|ref|YP_004048035.1| periplasmic hypothetical protein [Neisseria lactamica ST-640]
gi|313005213|emb|CBN86646.1| putative periplasmic hypothetical protein [Neisseria lactamica
020-06]
Length = 288
Score = 39.1 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + S +LF+ T+ +V QK+ S NS
Sbjct: 5 ILTSVALLACSGSLFA----QTLATVNGQKIDSSVIDAQVAAFRAE---------NSSAE 51
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
S L + +L+ ++ + Q ++ + L+ +A+ K F +
Sbjct: 52 DSPQLRRALLNQEITHTVVAQEVKRLKLDRS-AEFKDMLAKLRAEAEKSGDDKKPSFKTV 110
Query: 141 LAR 143
Sbjct: 111 WQA 113
>gi|192361586|ref|YP_001982980.1| peptidyl-prolyl cis-trans isomerase D [Cellvibrio japonicus
Ueda107]
gi|190687751|gb|ACE85429.1| peptidyl-prolyl cis-trans isomerase D [Cellvibrio japonicus
Ueda107]
Length = 270
Score = 39.1 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
L+ L S S ++ SV + + F K I ++ V+ +
Sbjct: 12 LAALLMGCSDSGSIASVNGKGISQEEFNAYLK--FKRIPEQDKARVD-----------RA 58
Query: 90 LDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
LD V+ A L IE G + D + E+ F
Sbjct: 59 LDEYVNRAALAAAIEKTG-KLDAAVIQAELEEFKRQMLIGRYFEE 102
>gi|126734461|ref|ZP_01750208.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
CCS2]
gi|126717327|gb|EBA14191.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseobacter sp.
CCS2]
Length = 280
Score = 39.1 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
FL + ++ V+ + V +VG ++ I + + +
Sbjct: 7 FLGATAMATVLS-TGAFAQDVTAETVVATVGDTEITMGEIIIA----RTQLPPQY----- 56
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIE 104
+ + L ++D L+ L +
Sbjct: 57 -AQLPADALFNGLVDQLIQQQLLADEAD 83
>gi|157164911|ref|YP_001467478.1| putative periplasmic protein [Campylobacter concisus 13826]
gi|112801060|gb|EAT98404.1| putative periplasmic protein [Campylobacter concisus 13826]
Length = 276
Score = 39.1 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 22/190 (11%), Positives = 51/190 (26%), Gaps = 26/190 (13%)
Query: 23 VPFLIWGLSDALFSVSGS---STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+ FL G+ AL S V + + + +Q
Sbjct: 4 LLFLAAGVLSALNLYSAQMINGIAAIVENEPITLYEVYSLKEQLKTT------------- 50
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
++ L+ L+ D I+++ L + I K N ++ F +
Sbjct: 51 ------EQDALNLLIRDRLEDAQIKNLNLSVTPFELNDRIEAI----AKQNGMTNSQFRN 100
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
+ +G++ ++ ++ + + + + F
Sbjct: 101 SIQAQGMDFLDFKNNLEHKMLQEKLYKSIAAEAGKNINEQKAKAYFDANPDKFKVFSTAR 160
Query: 200 RHVPAIADPS 209
V DP
Sbjct: 161 VVVYRAKDPD 170
>gi|167383167|ref|XP_001736433.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901220|gb|EDR27338.1| hypothetical protein EDI_276490 [Entamoeba dispar SAW760]
Length = 485
Score = 39.1 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 18/190 (9%), Positives = 51/190 (26%)
Query: 49 QKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
+K+ + + ++ N ++A + +++ L+ V ++ E + L
Sbjct: 66 EKIEETEKKMKNNKTTKKSKEQKRNERNEKKAEKLRKEEEALNQKVEQTLIEPSSEKVQL 125
Query: 109 EADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMF 168
E V + +F + V + E +
Sbjct: 126 EVIEEEVSTVVKEEIHESNALEEFDTENEVKEKKVKKNKPVELEIKERNGKINLKGLPKE 185
Query: 169 VGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPE 228
+ N + + + + ++ ++ N L Q + + R
Sbjct: 186 IRKKNIINEEEKLEMLKQYFEQWNEQVNMDYYPFNHLSAADNKDLNQILNQISASKRKNY 245
Query: 229 YKRISYILFD 238
K+
Sbjct: 246 LKQYKNDSSF 255
>gi|332968862|gb|EGK07909.1| hypothetical protein HMPREF0476_1616 [Kingella kingae ATCC 23330]
Length = 318
Score = 39.1 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 9/85 (10%), Positives = 23/85 (27%), Gaps = 8/85 (9%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+S ++ V + + + ++ ++ L + LV + L
Sbjct: 29 NSVLMEVNSSIITYGDVSRTVRELKSR--------PTNKDIPEAQLVQAAKMQLVERSLL 80
Query: 100 DQFIEDIGLEADHGRVWGEIARSPL 124
L + E+ R
Sbjct: 81 ADAARQQQLRVPEAGIDEELQRRAA 105
>gi|328718803|ref|XP_003246583.1| PREDICTED: hypothetical protein LOC100574370 [Acyrthosiphon pisum]
Length = 1076
Score = 39.1 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 30/409 (7%), Positives = 106/409 (25%), Gaps = 5/409 (1%)
Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
+ + ++Q+ + + +SE + + + T+ Q D
Sbjct: 618 NEYETDYQQQFNNKNDSVEKQNSSETIQPYNAVNDSTNEIDITNTVTQVSSDFKTIPKDQ 677
Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
+I+ + L + + H + +H +
Sbjct: 678 EPLHDISNNDLTNNTNYYQDHPDDDDTKEPPTHEYETQPEHVANDEHFYTDELVDGNKEV 737
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
N ++ ++ F++++ + ++ LT+ + D+ K+ +
Sbjct: 738 VINNNIEPIQQDEFDDKNNVHDGYYYQNPADDKK---ENLTENQYENPDSQVKDVEKQQA 794
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAF--QSLK 291
+ + E Q + +Y + + + ++ +
Sbjct: 795 DDDYYYQNYSNVDQQEQPENQYSKPAVEGEYTDEHVEHDDYYYQNHARDEIKEQQGDQQY 854
Query: 292 KGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351
+ + +Q + D ++S +G++ +
Sbjct: 855 VDPNYQENYVDQPPAHDDYYYQNYSNGDPKTQPENQYTTESDHQGEYVAEQNMVHDDYYY 914
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ + ++ + ED + DE +++E
Sbjct: 915 QNHPKEGKNENQVDQHYQEHQGNYANGEQDNYYYEDNSNVNTERHPEDQYDENAQQETYT 974
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ ++ +P ++ + +D + + +
Sbjct: 975 GDQHTNDGYYYQEGNTNYDKTVPKEQYDGYVDNNQDANAAYYTDPNVEN 1023
>gi|118385676|ref|XP_001025965.1| Dynein heavy chain family protein [Tetrahymena thermophila]
gi|89307732|gb|EAS05720.1| Dynein heavy chain family protein [Tetrahymena thermophila SB210]
Length = 4364
Score = 39.1 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 53/529 (10%), Positives = 145/529 (27%), Gaps = 52/529 (9%)
Query: 41 STVVSVGRQKVPF--SSFINSWKQELGMISQKIGFVV----NSERARSVGLDKKILDNLV 94
+ V + I+ +++EL +++ + ++ S + + + D+L+
Sbjct: 644 KNITEVKNHLISEWHKDVIDIYQEELNQMNKNKRQAILFFNSNATLMSNQIRQLVSDSLI 703
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
Q + L + E + F H + R + Y
Sbjct: 704 LYKEFFQRFKKNKLLTPKDIIEREKNHNNSIED---VFLHVKLTAEDRRIEFADDLYESI 760
Query: 155 YTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE-------------NRSVDYIVLNNRH 201
+ +++ D + G + ++ + N ++
Sbjct: 761 HKELIKIIDDIIATTQGFPRPENTIARSVVKSLWAVPRDDEIFLNVKEEIDSILERNLKN 820
Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
V + + EK + ++ ++++ +K + N E+ N
Sbjct: 821 VQEVVKVYDKYSYLLEEKQRVEAWTRTPRKREEFTAEMNKYKKLYDEINKEIPFYVRTNM 880
Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
+++ + + + + K ++A+E I + + E +
Sbjct: 881 VLVDGVDVKKIFLQICQDIVIILQTSIHHYLLSKNAEIAKEINTIQEFIKSKAENYEKMK 940
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
D+ + + + + +++ + +
Sbjct: 941 DLEITIDKIKKTDHKRIQGDYQDVKVWFNLLYNTVHKVSEDDLKQLYITASLVYNLMNVV 1000
Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLP----LVDFAGKDVKGKEVAAIPYKE 437
E+ + ++ +E L + I I +A + K + AI
Sbjct: 1001 EQEESRLQKEKEELEQRLKRKKDEFELNIQDIHQKIDQLNTTYANEYSKEEACKAIEGYS 1060
Query: 438 QLLFRVFGKDDPLS-------------------KDHTVALPDGSYMWVQI-------KES 471
Q L + ++ +++ + D ++ K+
Sbjct: 1061 QTLKEYTAEMKEINLREELIGWTQSEFPKLQEAENNLLPYQDLWFLIRDKSDKIDLWKKV 1120
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
EE+ DVK + + SKA +V D+
Sbjct: 1121 KSVFTLDPEEIERDVKTMLNKATKLKIMFSKAKNMVNPLELTHTVLEDL 1169
>gi|300694578|ref|YP_003750551.1| isomerase [Ralstonia solanacearum PSI07]
gi|299076615|emb|CBJ35952.1| putative isomerase [Ralstonia solanacearum PSI07]
Length = 278
Score = 38.7 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 6/69 (8%), Positives = 14/69 (20%), Gaps = 14/69 (20%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
+ +V V + G N + + + L++
Sbjct: 27 GLPPGVIATVNGTPVTQEQLDRVI--------AQSGVQANP------QIAQALKQQLIAR 72
Query: 97 ATLDQFIED 105
Q
Sbjct: 73 ELFRQQAAK 81
>gi|146307077|ref|YP_001187542.1| trigger factor [Pseudomonas mendocina ymp]
gi|166229920|sp|A4XTZ4|TIG_PSEMY RecName: Full=Trigger factor; Short=TF
gi|145575278|gb|ABP84810.1| trigger factor [Pseudomonas mendocina ymp]
Length = 436
Score = 38.7 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 36/108 (33%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ +V G + + ++
Sbjct: 298 NPVEVPKALIGNEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDEARVRELIEEMASAYQEPEQVVAWYYKNDQQMNEVRSVVLEEQ 405
>gi|325300050|ref|YP_004259967.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
salanitronis DSM 18170]
gi|324319603|gb|ADY37494.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Bacteroides
salanitronis DSM 18170]
Length = 457
Score = 38.7 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 36/290 (12%), Positives = 76/290 (26%), Gaps = 26/290 (8%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
+ N P ++ F + ++ + K E E K A + E S
Sbjct: 160 NYFNKLPQDSIPFVPTQVEVQIITQEPKIPETEIERVKAQLREYADRVNKGETSFSTLAR 219
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
G + VF D G ++ I++
Sbjct: 220 FYSEDPGTARRGGEGGFTGRGELV-PEFANVVFNLTDTKKVSKVFETEFGFHIAQLIEKR 278
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG---------- 521
+ + + V K + ++ + + + KE +F D
Sbjct: 279 GDRVNYRHILLRPKV-----DQKAIDASLARLDSIADDIRKEKFSFDDAATWISQDKDTR 333
Query: 522 KNLGASLLTTNQINRM--DNENKFFGYDGISQVFSGPVEMVKC----FPIENGLSYVVFK 575
N G + +R D V + + + + K
Sbjct: 334 NNHGLLANPQSNTSRFEMQQLAGLISQDVAKVVEGMQIGEISKPFTMINSKGKQVCAIVK 393
Query: 576 VTNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
+ N K ++ + S +T +++ L I + V ++ N
Sbjct: 394 LKNRIDGHKATITEDYQRLKSMVTAKRSEEKLQKWIVDKQKNTYVRINPN 443
Score = 37.9 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 36/445 (8%), Positives = 91/445 (20%), Gaps = 17/445 (3%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + + G+S V VG + + S N G
Sbjct: 11 VCLLLSLAGVSVFAQDNVIDEVVWVVGDEAILKSDVENERLNAQYENRHFDGDPY----- 65
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
I + L E + V ++ + + + S +
Sbjct: 66 ------CVIPEELAVQKLFLHQAELDSIIVSDQEVIQQVEQRISWLTEQIG-SREKMEEY 118
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
+ + + + + V + L R YF D I
Sbjct: 119 YNK---TYTQIREMLRENIRDGLTVQQMQQEIVGDIKLTPAEVRNYFNKLPQDSIPFVPT 175
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
V + + + R++ + + E
Sbjct: 176 QVEVQIITQEPKIPETEIERVKAQLREYADRVNKGETSFSTLARFYSEDPGTARRGGEGG 235
Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYI 320
+ + + G QL E++G ++ + K
Sbjct: 236 FTGRGELVPEFANVVFNLTDTKKVSKVFETEFGFHIAQLIEKRGDRVNYRHILLRPKVDQ 295
Query: 321 PDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380
+ + + + + + + A
Sbjct: 296 KAIDASLARLDSIADDIRKEKFSFDDAATWISQDKDTRNNHGLLANPQSNTSRFEMQQLA 355
Query: 381 SEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLL 440
++ K +E + + + + + G + ++L
Sbjct: 356 GLISQDVAKVVEGM--QIGEISKPFTMINSKGKQVCAIVKLKNRIDGHKATITEDYQRLK 413
Query: 441 FRVFGKDDPLSKDHTVALPDGSYMW 465
V K + +
Sbjct: 414 SMVTAKRSEEKLQKWIVDKQKNTYV 438
>gi|205371976|ref|ZP_03224794.1| hypothetical protein Bcoam_00391 [Bacillus coahuilensis m4-4]
Length = 128
Score = 38.7 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 21/85 (24%)
Query: 30 LSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKI 89
+ + F + + +VG +++ + ++ + E+G +K
Sbjct: 36 IQEQSFLAANEEVIATVGEERITRNDWLYRLESEVG---------------------EKS 74
Query: 90 LDNLVSGATLDQFIEDIGLEADHGR 114
L LV LD E L
Sbjct: 75 LQELVDERVLDLAAERYDLNVXKEE 99
>gi|159046106|ref|YP_001534900.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
shibae DFL 12]
gi|157913866|gb|ABV95299.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Dinoroseobacter
shibae DFL 12]
Length = 280
Score = 38.7 bits (87), Expect = 2.7, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+ IIRK +A++ L + + + + + + + +VG +++ I
Sbjct: 1 MNIIRK----PLARLALGLTLLSPVA------VQAQDADTVLATVGGEEITLGHLIAVAS 50
Query: 62 QELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
Q L +L+ ++ L Q
Sbjct: 51 SLPTQFQQ----------LADDRLYSGLLEQMIRQVALAQ 80
>gi|153005187|ref|YP_001379512.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
gi|152028760|gb|ABS26528.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anaeromyxobacter sp.
Fw109-5]
Length = 288
Score = 38.7 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 55/203 (27%), Gaps = 7/203 (3%)
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVL 483
D A + + + D L++ L Y + + R
Sbjct: 83 DDDPTVKARLAAARREILAAEYLDRELAQADREDLLRERY-AARKDQLARRRIHVAHVAF 141
Query: 484 TDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENK 542
+ + A+ +S+A + G F + K + +T +
Sbjct: 142 LARDGEPRAKAAAQSKASRAYARLA----GGDAFEAVAKEMSEDPVTGAKGGDLGPLLEG 197
Query: 543 FFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDL 602
+ PIE + V K D S L ++
Sbjct: 198 EVDQGFFEAAAALTAGEF-SKPIETPYGFHVVKALERVETVTPSFDDVRSALAAEARRET 256
Query: 603 LDSVIAYLKSQYSVTVHDNLIQR 625
++ L+ SV V+ + ++R
Sbjct: 257 QVKLLERLREDVSVRVYPDRVKR 279
>gi|327480672|gb|AEA83982.1| trigger factor [Pseudomonas stutzeri DSM 4166]
Length = 436
Score = 38.7 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + ++ +V G + + ++
Sbjct: 298 NPIEVPKALVDNEVNRLRVQAVQQFGGNIKPDQLPAELFQEQAKRRVVLGLIVAEVVKQK 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 ELKPDEARVRELIEEMASAYQEPEQVVAWYYKNAEQLNEVRSVVLEEQ 405
>gi|270290459|ref|ZP_06196684.1| foldase prsA [Pediococcus acidilactici 7_4]
gi|304384659|ref|ZP_07367005.1| peptidyl-prolyl cis-trans isomerase [Pediococcus acidilactici DSM
20284]
gi|270281240|gb|EFA27073.1| foldase prsA [Pediococcus acidilactici 7_4]
gi|304328853|gb|EFL96073.1| peptidyl-prolyl cis-trans isomerase [Pediococcus acidilactici DSM
20284]
Length = 300
Score = 38.7 bits (87), Expect = 2.8, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 37/145 (25%), Gaps = 36/145 (24%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K+ L + + GS TV + K+ + +S K
Sbjct: 6 KVLLGFASIAMAFT------LAACGSKTVATTSGGKITQDEYYSSLKDTSNG-------- 51
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
K++L ++ L+ + G + V + +G
Sbjct: 52 ------------KQVLQEMIVNKVLE---KQYGDKVTKKVVDKQYNAYKDQYGSS----- 91
Query: 135 DVFVSRLAREGINEKEYIDHYTKML 159
F LA G+ E
Sbjct: 92 --FKDILASNGMTEASLRKQIRSNA 114
>gi|58040109|ref|YP_192073.1| peptidyl-prolyl cis-trans isomerase precursor [Gluconobacter
oxydans 621H]
gi|58002523|gb|AAW61417.1| Peptidyl-prolyl cis-trans isomerase precursor [Gluconobacter
oxydans 621H]
Length = 308
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 10/67 (14%)
Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
+ +V K+ + Q V+ I++ LV +
Sbjct: 51 IATVNGAKITLGDVQRAAGNLPPQARQIQPSVLVP----------LIVNQLVDQKAVQFA 100
Query: 103 IEDIGLE 109
E GL
Sbjct: 101 AEKEGLN 107
>gi|311067484|ref|YP_003972407.1| molecular chaperone lipoprotein [Bacillus atrophaeus 1942]
gi|310868001|gb|ADP31476.1| molecular chaperone lipoprotein [Bacillus atrophaeus 1942]
Length = 284
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 23/179 (12%), Positives = 48/179 (26%), Gaps = 32/179 (17%)
Query: 483 LTDVKKDWKTVKTAE---------------------------EVSSKANQLVLEYSKEGK 515
VK + T K AE + V + K+G+
Sbjct: 102 KEQVKYELLTQKAAEDNIKVTDDDVKEYWEGLKGKIHTSHILVADKDTAEEVEKKLKKGE 161
Query: 516 NFRDIGKNLGA--SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
F D+ K S + + ++ F V P++ Y +
Sbjct: 162 KFEDLAKEYSTDSSANNGGDLGWISKDDTQLDATFSKAAFKLKKGEV-SDPVKTQFGYHI 220
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKD--LLDSVIAYLKSQYSVTVHDNLIQRYLDGE 630
K T + K + + D + + + + + + V D ++ +
Sbjct: 221 IKNTEERGKYDDMKKDLKKDVKEQKLSDTSAVQAAVEKVIKKADIDVKDKDLKDTFNTS 279
Score = 37.5 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 9/161 (5%)
Query: 204 AIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEK 263
++ + + ++YK D +++ K E+ + + K +
Sbjct: 65 KKYKVTDKEIDKKLKEYKTQLGDQYSALKEQYGEDYLKEQVKYELLTQKAAEDNIKVTDD 124
Query: 264 YFSPEIR------TVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS---LSDISLGS 314
++ ++ A+E + LKKG+KF LA+E + LG
Sbjct: 125 DVKEYWEGLKGKIHTSHILVADKDTAEEVEKKLKKGEKFEDLAKEYSTDSSANNGGDLGW 184
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN 355
SK+ + KKG+ + + FGY I +
Sbjct: 185 ISKDDTQLDATFSKAAFKLKKGEVSDPVKTQFGYHIIKNTE 225
>gi|296271089|ref|YP_003653721.1| hypothetical protein Tbis_3134 [Thermobispora bispora DSM 43833]
gi|296093876|gb|ADG89828.1| hypothetical protein Tbis_3134 [Thermobispora bispora DSM 43833]
Length = 201
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 9/84 (10%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
V + T VG ++ S ++ +++ + + + L + +L + +
Sbjct: 23 GVQQAGTAAYVGNYRISSSELDAQVREFHKALAR--NGMTERQLGFGLSLPQMVLYRMAN 80
Query: 96 GATLDQFIEDIGLEADHGRVWGEI 119
++ + G+ +V +
Sbjct: 81 AKQFIEYGKRAGVTITQRQVDDTV 104
>gi|146282417|ref|YP_001172570.1| trigger factor [Pseudomonas stutzeri A1501]
gi|166229922|sp|A4VL77|TIG_PSEU5 RecName: Full=Trigger factor; Short=TF
gi|145570622|gb|ABP79728.1| trigger factor [Pseudomonas stutzeri A1501]
Length = 436
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + ++ +V G + + ++
Sbjct: 298 NPIEVPKALVDNEVNRLRVQAVQQFGGNIKPDQLPAELFQEQAKRRVVLGLIVAEVVKQK 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 ELKPDEARVRELIEEMASAYQEPEQVVAWYYKNAEQLNEVRSVVLEEQ 405
>gi|288818384|ref|YP_003432732.1| hypothetical protein HTH_1073 [Hydrogenobacter thermophilus TK-6]
gi|288787784|dbj|BAI69531.1| hypothetical protein HTH_1073 [Hydrogenobacter thermophilus TK-6]
gi|308751977|gb|ADO45460.1| SurA domain protein [Hydrogenobacter thermophilus TK-6]
Length = 290
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 58/183 (31%), Gaps = 9/183 (4%)
Query: 437 EQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTA 496
++L DD L KE + E L + +
Sbjct: 107 KELAKEELTLDDLKRFLEKELLSTQGLSIYLSKEIKVSDLDVELEKLKRGEVKLRRDIDL 166
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGP 556
+ K + +L+ +E K +DI + A + + + E +V+ P
Sbjct: 167 LVLDKKDGEKLLKMMEERKTLQDIARAFSAKVES------LSVEKGDLVEPLDKEVWKAP 220
Query: 557 VEMVKCFPIENGLSYVVFKVTNSKVG-PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
+ + E+G + +V + K +D+ + ++ ++ LK +
Sbjct: 221 LNTL--VVAEDGEHIYLAQVKDQKEIYSGVSEDELRKEILAKKIEEKRRELLENLKKKSF 278
Query: 616 VTV 618
V +
Sbjct: 279 VKI 281
Score = 37.9 bits (85), Expect = 5.6, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 39/141 (27%), Gaps = 25/141 (17%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
+L + ++ A + SV + + S + E
Sbjct: 12 GILLLA---TLVASAFAQKLVDKVIASVNGEPILESDVKLA------------------E 50
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
K+++ LV L QF+E G + + K N +
Sbjct: 51 LFYGTQDRHKVINKLVDVYLLAQFLESRGGRVPEEYISATLMDI----AKANNTDLEGLA 106
Query: 139 SRLAREGINEKEYIDHYTKML 159
LA+E + + K L
Sbjct: 107 KELAKEELTLDDLKRFLEKEL 127
>gi|237714319|ref|ZP_04544800.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
gi|229445483|gb|EEO51274.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D1]
Length = 514
Score = 38.7 bits (87), Expect = 2.9, Method: Composition-based stats.
Identities = 25/279 (8%), Positives = 69/279 (24%), Gaps = 35/279 (12%)
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
S+ + + + T+ + + S + + ++ +
Sbjct: 257 SWQYTPNQAAMEELLTKGRTEQNLFTIDGQAYTGAMFTQFASSHPQAAKRQLEGFIAKSL 316
Query: 419 -DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG----SYMWVQIKESIP 473
D+ +++ K + K+ K A+ D +Y +
Sbjct: 317 LDYESRNIDKKHPEIRIALRESDENYLVKEITRQKIELPAINDRAGLATYFKFHSSDYRW 376
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
R V KTA++ ++ + +Q
Sbjct: 377 ESPRYRG-----VVLHCVDKKTAKQAKKMLKKVPEK-------------------EWVDQ 412
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS------YVVFKVTNSKVGPVQEK 587
+ + N + +F+ + Y V K+ +
Sbjct: 413 LRQTFNTSGTEKIQVEQGIFADGDNKYIDKLVFKKGGFEPVMSYPFTIVVGEKMKGPDDY 472
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ I + + L L+ V ++ +++
Sbjct: 473 REVIEQVRKDYRSYLDTCWARELREFGKVEINQEVLKTV 511
>gi|74002304|ref|XP_535677.2| PREDICTED: similar to centromere protein E [Canis familiaris]
Length = 1297
Score = 38.7 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 45/491 (9%), Positives = 146/491 (29%), Gaps = 8/491 (1%)
Query: 50 KVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE 109
++ + ++ + + + L +++ + L + Q IE L+
Sbjct: 199 EITNNELQKKIQELHEKQQFMSTKEITETQEKMSEL-EQLKEQLRVKDSSLQNIESEKLK 257
Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
+ + + + ++ + ++ R+ + + +
Sbjct: 258 LTEK-LQESQDKIKIVIKERDELKRVQELLQMERDQLKANIKEIVAEEYQQTISTRNISK 316
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
+ +N+ + + + + S ++ N +
Sbjct: 317 KTDQEANIERVIESSDAESQEKIQELQEKEHQLLKMKTVSETQEKICEMEHLKNQFEAQK 376
Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKN--KEKYFSPEIRTVEQLVFPNQKEADEAF 287
+ I + +++ + +E+++ ++ +QL ++
Sbjct: 377 STLENIEMENARLTQRLHENLEEMRSVTKERDDLRSIEETLKVERDQLKENLRETVIRDL 436
Query: 288 QSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFG 347
+ ++ + +E +++ + K D + +
Sbjct: 437 EKQEELRIARMHVKEHQETIDKLRGLVSEKTDELSNMQIDLENTNDALKTQIQELQEKEH 496
Query: 348 YVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
++ ++++ + + Q ++ A + + ++L E L + E
Sbjct: 497 QLLKVKNDLRENMYQTEQLKEQLQAQHSTLESVETERLRLSQKLHENLEEIKCVTEERDT 556
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
K L + ++ ++ A K++ L V K+H + + +
Sbjct: 557 LKRAERTLRMEQCQLRESLREKEAQDLEKQEELRIVCMH----VKEHQETIDKLRGLVSE 612
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ I LE +++ + +K E K + V E K+ + K L
Sbjct: 613 KTDEIANMQMDLENSNAKLQEKIQQLKANEHQLFKLKEDVSETQKKTSEIERLKKQLKGQ 672
Query: 528 LLTTNQINRMD 538
LT ++I +
Sbjct: 673 SLTLDKIEMEN 683
>gi|299069905|emb|CBJ41188.1| putative isomerase [Ralstonia solanacearum CMR15]
Length = 270
Score = 38.7 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 6/86 (6%), Positives = 21/86 (24%), Gaps = 14/86 (16%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
++ + + A + V ++ ++ + G N
Sbjct: 1 MVALALAAFTTLPAQADTLPPGVIAIVNGTRITQEQLDHAI--------AQSGAQANP-- 50
Query: 80 ARSVGLDKKILDNLVSGATLDQFIED 105
+ + + L++ Q
Sbjct: 51 ----QVAQALKQQLIARELFRQQAAK 72
>gi|162449966|ref|YP_001612333.1| peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum 'So ce
56']
gi|161160548|emb|CAN91853.1| peptidyl-prolyl cis-trans isomerase [Sorangium cellulosum 'So ce
56']
Length = 302
Score = 38.7 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 16/66 (24%), Gaps = 6/66 (9%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
VG + S Q Q G E R ++L V L Q
Sbjct: 2 ARVGDAAITASEVERRLAQVPPFQLQTFGR--TPEEIRK-NFVNQVL---VRELLLAQGA 55
Query: 104 EDIGLE 109
L
Sbjct: 56 AAQKLT 61
>gi|154415996|ref|XP_001581021.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915245|gb|EAY20035.1| hypothetical protein TVAG_365430 [Trichomonas vaginalis G3]
Length = 3556
Score = 38.7 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 2/120 (1%)
Query: 502 KANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVK 561
K+++L + S+ K S L+ + F D ++++F+ V +
Sbjct: 1553 KSDELASKLSEIANTSIMAFKEPLCSALSYVSLAYFIQMAPVFSNDPVTEIFTRIVSNLA 1612
Query: 562 CFPIENGLSYVVFKVTNS--KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
+ V+ +++ K V +D+ I D L+ + LK V ++
Sbjct: 1613 DLFGADDAKEVIDYISSVFGKTADVTTEDQVIQMHKDPEFNDKLNQLNEALKKHSGVIIN 1672
>gi|24215168|ref|NP_712649.1| hypothetical protein LA_2468 [Leptospira interrogans serovar Lai
str. 56601]
gi|24196240|gb|AAN49667.1|AE011414_9 hypothetical protein LA_2468 [Leptospira interrogans serovar Lai
str. 56601]
Length = 444
Score = 38.7 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 27/263 (10%), Positives = 76/263 (28%), Gaps = 20/263 (7%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALF---SVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ I + L + FL + F S + +G +P + + K+E
Sbjct: 51 GFFLFILVGGLIITFLPGDAEKSFFDVISGKSNVNAGKIGDYSIPM-DYYQAAKRECYFQ 109
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL--- 124
+ I + + + + + +LV +Q + G A + E++
Sbjct: 110 YRNIAPSLAEDPSTLQSCAFQTIRSLV---VTEQIAKATGFSASETGIREELSDEARRIY 166
Query: 125 --------FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+ + + ++ L + + ID + ++ +
Sbjct: 167 RESVNGAGYSDDEVRKPEVIYKQILNSAPMQYR--IDRKNASIIYDTLLNSDLKKTDGEI 224
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ ++ F R V Y + P + + + + + +
Sbjct: 225 AVQKESTSARFRLRIVSYTDDQLSKLAEKEAPISEEILRAKYENEKKEGKLPKNTDGKEI 284
Query: 237 FDVHEKEKKIEISNDELQAEYEK 259
K E++++ ++
Sbjct: 285 SFEERKNFLKSKLLLEIRSKSQE 307
>gi|291459856|ref|ZP_06599246.1| putative PPIC-type PPIASE domain protein [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291417646|gb|EFE91365.1| putative PPIC-type PPIASE domain protein [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 342
Score = 38.7 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 33/301 (10%), Positives = 76/301 (25%), Gaps = 13/301 (4%)
Query: 317 KEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMR 376
+E ++ L+ FG ++ + + R
Sbjct: 5 RESEIGPKRGEARRMLSLLLSLLFSALLLFGCKGIQITGKTEDVPGFTEAQAMVLLGSER 64
Query: 377 ITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV-----KGKEVA 431
+ E + + + R K D+ +D ++ + +
Sbjct: 65 NRYQNVFGPELWSLPISGQQEENYGEYFTARMKEFLQDVKTLDLLAEEKGIVVTSTEMES 124
Query: 432 AIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL--EEVLTDVKKD 489
+ + +D + TV Y+ + EV K
Sbjct: 125 IRRASTEFYNALSEEDRSFMGNCTVKDVTDIYVNYFLACKTAEYLLSNINSEVSDAEAKV 184
Query: 490 WKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGI 549
+ A +L + G NF + + R + E+ ++
Sbjct: 185 ISIQQIVVSDEESAKKLHESVTASGANFSYFARQFSEDPEIDRTLYRKEEEDAYY----- 239
Query: 550 SQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE-KDKFISYLTQMMNKDLLDSVIA 608
FS + ++G Y++ V + +E K + + + DS
Sbjct: 240 QAAFSLEDGQISDVISQDGKFYIIKCVDSYDEKATEERKKRLEEAIRSGAFRRSYDSYAE 299
Query: 609 Y 609
Sbjct: 300 Q 300
>gi|154503863|ref|ZP_02040923.1| hypothetical protein RUMGNA_01689 [Ruminococcus gnavus ATCC 29149]
gi|153795462|gb|EDN77882.1| hypothetical protein RUMGNA_01689 [Ruminococcus gnavus ATCC 29149]
Length = 350
Score = 38.7 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 33/288 (11%), Positives = 74/288 (25%), Gaps = 22/288 (7%)
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ SF + D + + + + E L + + +
Sbjct: 49 NFYARMQQAQYESFYAGLMGMSADTMWSQEVEEGKTYEENMKDSILESLENMYLVKQHAS 108
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQ------------LLFRVFGKDDPLSKDH 454
K+ D + E + KE L + K D K+
Sbjct: 109 EYKVELTDEEKKKIDKAAEEFVEDNTLEDKEVVSGYKKYVKEYLELATIQQKMDAPMKEG 168
Query: 455 TVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKE- 513
+ E + K ++ V+ K + KA + S +
Sbjct: 169 VDENVSDEDAAQKKIEYVQFSYTKKDDSGQSVQMTDDEKKAEK---EKAQTFLDTVSADP 225
Query: 514 GKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVV 573
K+ + + T D+E+ D + + IE V
Sbjct: 226 DKDMNAAAASAEKEVQTAT----FDSESSTLNADLLKAADALENVGDVTSLIETDDGIYV 281
Query: 574 FKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K+T+ + D+ + + + + + + + + V
Sbjct: 282 AKLTSK--LDREATDQKKKEIVEERKQKQYEDQVETWRKETDIKVDKK 327
Score = 37.1 bits (83), Expect = 8.9, Method: Composition-based stats.
Identities = 27/334 (8%), Positives = 79/334 (23%), Gaps = 15/334 (4%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ------- 69
+ + ++ + +TVV+VG +KV + + +
Sbjct: 9 VITAVAGILAAVTITGCSAAPDNDATVVTVGTEKVSYGVANFYARMQQAQYESFYAGLMG 68
Query: 70 -----KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL 124
V + + IL++L + + Q + +E +
Sbjct: 69 MSADTMWSQEVEEGKTYEENMKDSILESLENMYLVKQHASEYKVELTDEEKKKIDKAAEE 128
Query: 125 FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKR 184
F + +V ++ + + + + + +
Sbjct: 129 FVEDNTLEDKEVVSGYKK---YVKEYLELATIQQKMDAPMKEGVDENVSDEDAAQKKIEY 185
Query: 185 FYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEK 244
F D + + + + + + +V
Sbjct: 186 VQFSYTKKDDSGQSVQMTDDEKKAEKEKAQTFLDTVSADPDKDMNAAAASAEKEVQTATF 245
Query: 245 KIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQG 304
E S + + +E + +K ++ EE+
Sbjct: 246 DSESSTLNADLLKAADALENVGDVTSLIETDDGIYVAKLTSKLDREATDQKKKEIVEERK 305
Query: 305 KSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+ + + ++ KE V + +
Sbjct: 306 QKQYEDQVETWRKETDIKVDKKEWKKVDFEDQGV 339
>gi|156938560|gb|ABU97261.1| MSL1 [Drosophila simulans]
Length = 1044
Score = 38.7 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 41/542 (7%), Positives = 138/542 (25%), Gaps = 21/542 (3%)
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
++ ++ L ++ + + A + + A+ + ++ + V
Sbjct: 99 ADMVTLIVENNNLKRMIVLHLKLMQEQTDSIAAKDKELDDQSAKMSVVMAQNMELKQAVA 158
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
A E ++++ + + + D + P LL R +
Sbjct: 159 QLEAANEDLSKQLRRKNQRRNDNDDDDDDPSLPPAAPQQKLLRCHAETQTVLREREQGTQ 218
Query: 198 NNRHVPAIADPSNAVLTQWFEKYKDNY--RAPEYKRISYILFDVHEKEKKIEISNDELQA 255
P +A+ + + + ++S LQ
Sbjct: 219 TIDAQPQLANALPRGINMEESSAVYQHAGAVTNQPASKRSESKGRGEFNGKKVSTFILQR 278
Query: 256 EYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSF 315
+ + E + ++++ + L + +Q+ E + + +
Sbjct: 279 MNQDFEHHIHDQTEVVEEHEMEAHKEQLSQEEDQLVAEEDHLQMQEVHTEEVVGGDIFHD 338
Query: 316 SKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQM 375
+ E I + + + + + G + + + + + ++ Q
Sbjct: 339 ALESIEMEVVTEELVDMDEHGQS---VEANGHIEEDDDEDDEDEENSDKDDDSEEDDYQW 395
Query: 376 RITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPY 435
A+ + + + + + + P +
Sbjct: 396 MDNDANVNARTEEELWQNQNYFLELDPTEEKTCAPSAHSTPNHQQKSSTQAEIRMKGNQN 455
Query: 436 KEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKT 495
+ + D A S++ ++ K+ + EV
Sbjct: 456 WITEKMLQLKPEPMEAGDAIEAPIILSWVGLKKKDKEHESVPEPPEVPKQQTHQEDATVD 515
Query: 496 AEEVSSKAN----------QLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKF-F 544
+ + +K Q E ++G+ + + + + +
Sbjct: 516 HKAIKNKLEVPKSDLKPKDQPKEEQRQDGQQDVRVEQQEDVRKEQKETLKKQPEDAPKHL 575
Query: 545 GYDGISQVFSGPVEMVKCFPIENGLSYVVF-----KVTNSKVGPVQEKDKFISYLTQMMN 599
+V S P + + + + K+ + + + + Q+
Sbjct: 576 PNAVAPKVASVPKTSSRESTLPKANTADIKDAPAQKIIANHQSTKTQTEPVKTQRLQVKI 635
Query: 600 KD 601
+
Sbjct: 636 RQ 637
>gi|149177450|ref|ZP_01856054.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris
DSM 8797]
gi|148843783|gb|EDL58142.1| probable peptidyl-prolyl cis-trans isomerase [Planctomyces maris
DSM 8797]
Length = 407
Score = 38.7 bits (87), Expect = 3.0, Method: Composition-based stats.
Identities = 31/293 (10%), Positives = 80/293 (27%), Gaps = 16/293 (5%)
Query: 337 DFTPVIHGSFGYVIAHVSNIKPSFTVSFQEV------KKDIANQMRITKASEKVKEDYKR 390
+ +I + + P + K I Q+ I + +K++
Sbjct: 105 FVSDIIGVYDFQLKQAEQRMPPEEYQKLRRALVKRDLKSHIERQLLIHEMKTTLKKEQLA 164
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
+ + +E + + K + + KE + +
Sbjct: 165 MLQEHLDKAFDEERIPELQKAVGASSPQELEEKL-NQQGRSLYYEKELFMKQQSALQFMA 223
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
K + + + K ++ + ++ + ++ ++++ +
Sbjct: 224 VKAKSKNDFSREEVLARYKSNLDEYAYPAKARWQRIRISYAKHGGKDKAVGVLDEVIHKL 283
Query: 511 SKEGKNFRDIGKNL--GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENG 568
+ G+NF + + G Q + + +F PV E
Sbjct: 284 -QAGENFGTLAEKYSDGPRAEKKGQWGWTGR-GSLADSEVEAALFELPVGQTSQV-FETD 340
Query: 569 LSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKD----LLDSVIAYLKSQYSVT 617
S+ + KV + K + L Q M D + L + +
Sbjct: 341 DSFQIVKVIDRKEAGHTPFADVQAQLEQSMVNDARMKATRETLDQLFKKAIIE 393
>gi|262408152|ref|ZP_06084699.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_22]
gi|294645122|ref|ZP_06722847.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294809726|ref|ZP_06768413.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
gi|262353704|gb|EEZ02797.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 2_1_22]
gi|292639546|gb|EFF57839.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a]
gi|294443060|gb|EFG11840.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b]
Length = 515
Score = 38.7 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 25/279 (8%), Positives = 69/279 (24%), Gaps = 35/279 (12%)
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
S+ + + + T+ + + S + + ++ +
Sbjct: 258 SWQYTPNQAAMEELLTKGRTEQNLFTIDGQAYTGAMFTQFASSHPQAAKRQLEGFIAKSL 317
Query: 419 -DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG----SYMWVQIKESIP 473
D+ +++ K + K+ K A+ D +Y +
Sbjct: 318 LDYESRNIDKKHPEIRIALRESDENYLVKEITRQKIELPAINDRAGLATYFKFHSSDYRW 377
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
R V KTA++ ++ + +Q
Sbjct: 378 ESPRYRG-----VVLHCVDKKTAKQAKKMLKKVPEK-------------------EWVDQ 413
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLS------YVVFKVTNSKVGPVQEK 587
+ + N + +F+ + Y V K+ +
Sbjct: 414 LRQTFNTSGTEKIQVEQGIFADGDNKYIDKLVFKKGGFEPVMSYPFTIVVGEKMKGPDDY 473
Query: 588 DKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ I + + L L+ V ++ +++
Sbjct: 474 REVIEQVRKDYRSYLDTCWARELREFGKVEINQEVLKTV 512
>gi|269467952|gb|EEZ79687.1| parvulin-like peptidyl-prolyl isomerase [uncultured SUP05 cluster
bacterium]
Length = 298
Score = 38.7 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 9/112 (8%), Positives = 26/112 (23%), Gaps = 2/112 (1%)
Query: 507 VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
+ + G +F + K N + + +
Sbjct: 184 LSDKINNGTSFSSLAKLYSQDPSYKNGGESGWLDKDRLPPIFKQNLQGLKKNELSKPFKT 243
Query: 567 NGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
++ + V + L Q +S + L+ + + +
Sbjct: 244 AQGWRIIKNINKRNVDTH--LASIKAQLIQKKKNTFFNSWVKGLREKAYIEI 293
>gi|297588598|ref|ZP_06947241.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516]
gi|297573971|gb|EFH92692.1| peptidyl-prolyl cis-trans isomerase [Finegoldia magna ATCC 53516]
Length = 250
Score = 38.7 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 16/156 (10%), Positives = 53/156 (33%), Gaps = 6/156 (3%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++ + + + V+ + E AN++ + +G +F ++ K
Sbjct: 94 VRVSDEDLKEYYENHKDNFKVQPTFTASHILVESEDLANEIKEKIDNDG-DFAELAKEYS 152
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + + + + + + P++ Y + + + G V+
Sbjct: 153 TCPSKEQGGDLGTFQQGQMVKEFENALIENEIGDI-VGPVKTQFGYHIINIKDKTEGKVK 211
Query: 586 EKDKFISYLTQMMNKDLLD-SVIAY---LKSQYSVT 617
++ + + Q + + + I L+ +Y +
Sbjct: 212 SFEEAKNEVKQTLLQLKQQQAYIDATDKLQKEYKIE 247
>gi|328714736|ref|XP_001947075.2| PREDICTED: neurobeachin-like [Acyrthosiphon pisum]
Length = 3079
Score = 38.7 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 40/510 (7%), Positives = 118/510 (23%), Gaps = 14/510 (2%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDK----KILDNLVSG-ATLDQ 101
+ + ++ ++ ISQ+I + + E + L+ K++ L+ +Q
Sbjct: 758 NEETITLPTYNVLYEILTERISQQILYTRHPEPDSNCRLENPMILKVVATLIRQAKPSEQ 817
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+E L + + + + S +A I+ + + +
Sbjct: 818 LLEVKKLFLSDMTI--LCSNNRENRRTVLQMSVWQ-EWLIAMAYIHPRTCEEQKVSDMVY 874
Query: 162 TDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYK 221
+ ++ S + + + +
Sbjct: 875 NLFTMLLHHAIKHEYGGWRVWVDTLAIVHSKVSFEEFKLQFALMYEHYERQRSDNITDPR 934
Query: 222 DNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQK 281
+ P + E EQ + N +
Sbjct: 935 LRQQRPISTISGWENQPPAPPINHSPSETPESTISTPVEDVPVLKECKEKDEQELPTNSE 994
Query: 282 EADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPV 341
+ + + + + K L+ +I + + +
Sbjct: 995 TTLRESEIDNQESLNLSETTKLETFTDSKKENNTLKTQTQSNELSSTIEIVKSNEEISK- 1053
Query: 342 IHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSM 401
+ N + + +I + K + + +
Sbjct: 1054 -EYDNKFEDVFKENENENLDSPNETTIDEIVPTVIENKQDLLDLNKKNENDIIEQVNDVI 1112
Query: 402 DEISRREKIVSIDL-PLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ +++ + VK E+ L D +
Sbjct: 1113 PLKGVEDVKTHLNISEEIKMLDTAVKNSIQLDNSITEKYLQ--VNGDILPVDHESTERNF 1170
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ I + K E+ + ++ K N + G N +
Sbjct: 1171 DVTIENHIISNGEDIVSKDIEIHNSINTLLSEDLKDNSITEKENIEIAIMIDSGSN-ESV 1229
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGIS 550
+ + ++ L + I+ + + +
Sbjct: 1230 KEKINSNDLNQDSISNSSDSETIINSECLQ 1259
>gi|288800857|ref|ZP_06406314.1| putative PPIC-type PPIASE domain protein [Prevotella sp. oral taxon
299 str. F0039]
gi|288332318|gb|EFC70799.1| putative PPIC-type PPIASE domain protein [Prevotella sp. oral taxon
299 str. F0039]
Length = 461
Score = 38.7 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 43/421 (10%), Positives = 103/421 (24%), Gaps = 36/421 (8%)
Query: 218 EKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
++ ++N K++ + + + Y K + S Q +
Sbjct: 64 QQQQENAVENRNKKVVSSASILKNDVVVSADIEQQARNIYNKIASEVSSKGGLVKLQDIH 123
Query: 278 PNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGD 337
+ + + + L + + + LAK
Sbjct: 124 IYLSQRASKADEKNAKDQIEAIYNKVKAGEDFGKLAQLYTQNTLYRATKGELPWLAKGQT 183
Query: 338 FTPVIHGSFGYVIAHVSNIKPSF--TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
+ + +F VS S KK +A+ +++ + +
Sbjct: 184 LSEFENVAFALSPGEVSKPFMSVDGYHLLYLQKKVDFLSYNEVRANIIDFILKEKVRKGI 243
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
+ + D A ++ + + +
Sbjct: 244 DIQHVFASGEMGNTPSLTTISTTDEAFNTSSVASISNTLDAQSSSNEQLLTYLNNNLWNG 303
Query: 456 VALPD---GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
V Y K+ R V + +K+ +L+ E K
Sbjct: 304 VEADSRALERYFEANKKKYRFDEPRFKGYV----------------LYAKSAELLKELEK 347
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCF-------PI 565
+ K+ + A++ +R + +FS V
Sbjct: 348 KAKH-APLLNLNKAAIEDAVGGSRESFKID-------EGIFSLGENTVVDKEFYKQHNTN 399
Query: 566 ENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQR 625
+ K+ KV K + + + L +A LK +S+ ++ +
Sbjct: 400 SGASEFPFTKIVGKKVKQPDLKSEVTWQVLADYKEYLEQQWLAKLKKSHSIVINKKELST 459
Query: 626 Y 626
Sbjct: 460 I 460
>gi|168699139|ref|ZP_02731416.1| hypothetical protein GobsU_06435 [Gemmata obscuriglobus UQM 2246]
Length = 938
Score = 38.7 bits (87), Expect = 3.1, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 37/127 (29%), Gaps = 21/127 (16%)
Query: 449 PLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVL 508
P + + + E + A+ + V+ WK +K E +A +
Sbjct: 678 PPDDRSSFGSEGRARYVYWVTEDVQAKKTNYLTMKDQVRATWKRIKARELAQQRAEAVAE 737
Query: 509 EYSKEGKNF-----RDIGKNLG---------------ASLLTTNQINRMDNEN-KFFGYD 547
K+ + + + + A + ++ + + +
Sbjct: 738 AIRKDPASSSVTLHQAVAEQANKLQSEIPAGNKAYFRAKAFEIDNVSPLTPIDLASLSPE 797
Query: 548 GISQVFS 554
+ Q+FS
Sbjct: 798 VLQQMFS 804
>gi|254469068|ref|ZP_05082474.1| foldase protein PrsA, putative [beta proteobacterium KB13]
gi|207087878|gb|EDZ65161.1| foldase protein PrsA, putative [beta proteobacterium KB13]
Length = 257
Score = 38.7 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 54/166 (32%), Gaps = 5/166 (3%)
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYS---K 512
+ + Y+ IKE + + K+ + + + K +
Sbjct: 92 MEMAYTEYLKKYIKEHPISNEDIDLAYKNFTKQFNEQEYKGQHILVKTKNEAESLIGKIE 151
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSY 571
G F ++ KN + + +D + +++ + + + + +
Sbjct: 152 NGNEFSELAKNFSIDKASAEKGGDLDWFRLEDMVESFANEIKNLQINEL-SGAFQTQFGW 210
Query: 572 VVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
VFK+T+ K E + L + K L + I LK ++
Sbjct: 211 HVFKLTDKKPLTPPELSEIKKRLEDDLKKRKLKNHIKELKQNAEIS 256
>gi|89067389|ref|ZP_01154902.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanicola
granulosus HTCC2516]
gi|89046958|gb|EAR53012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Oceanicola
granulosus HTCC2516]
Length = 280
Score = 38.7 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 15/102 (14%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+L L GLS A + S V +V + I K ++
Sbjct: 7 LLASATLAAGLSTAAVAQEASDVVATVNGTDITLGEL----------IIAKAQLPQQYQQ 56
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
L ++D L+ L L+A RV +
Sbjct: 57 LPDDVLFDGLVDQLIQQQLLSDQ-----LDASPERVQLALKN 93
>gi|315500239|ref|YP_004089042.1| ppic-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
excentricus CB 48]
gi|315418251|gb|ADU14891.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Asticcacaulis
excentricus CB 48]
Length = 332
Score = 38.7 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 11/100 (11%)
Query: 17 FLVVLFVPFLIWGLS----DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
V+ V I G D G V + + S + + IG
Sbjct: 10 VAVLALVTLTIAGCDKPTLDERPPEPGDVAVARIDGHTIWASDV-----RYEAVQQGLIG 64
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
+ A L ++ L+ ++ L Q G++
Sbjct: 65 DGEPFDLA--SPLFRRTLEEVIDQKLLAQAALKKGIDRTE 102
>gi|187918726|ref|YP_001887757.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phytofirmans PsJN]
gi|187717164|gb|ACD18387.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phytofirmans PsJN]
Length = 250
Score = 38.7 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 9/111 (8%), Positives = 29/111 (26%), Gaps = 20/111 (18%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ +V + + V + FI + G + +++ +V
Sbjct: 2 TAIVRIDDEVVDVAEFIR--------------------LLKLTGQFESLIEQIVRDKLTV 41
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+ G+ + + G + ++ L + +
Sbjct: 42 HAAKKQGITVTADEIQQRADQFRRVRGLHRATDMNQYLDALNVSLDEFEAF 92
>gi|325981959|ref|YP_004294361.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Nitrosomonas sp.
AL212]
gi|325531478|gb|ADZ26199.1| peptidyl-prolyl cis-trans isomerase, EpsD family [Nitrosomonas sp.
AL212]
Length = 322
Score = 38.7 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 8/104 (7%), Positives = 30/104 (28%), Gaps = 13/104 (12%)
Query: 11 TWVAKIFLVVLFVP-FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ ++F+ + + ++VSV ++ + ++ Q
Sbjct: 5 HIRMISIIGLVFITVLTLTACDKESNTKKSGQSIVSVNGSEITMLQLNDEIRRSNIRADQ 64
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
+++L++L++ + L+
Sbjct: 65 Y------------ESAREQLLESLIARQLIVDEAIRNKLDRTPE 96
>gi|163743160|ref|ZP_02150542.1| PPIC-type PPIASE domain [Phaeobacter gallaeciensis 2.10]
gi|161383577|gb|EDQ07964.1| PPIC-type PPIASE domain [Phaeobacter gallaeciensis 2.10]
Length = 421
Score = 38.7 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 33/124 (26%), Gaps = 17/124 (13%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V+V V + + + KK ++L+
Sbjct: 47 PAVTVNDAVVTNYELQQ-----RARFLTLLRDPGDPQ--------KKAREDLILDRLKLD 93
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G+E + + S F++ L + G+ + D ++
Sbjct: 94 VLAQAGIEPTEEEIVEGMTEL----AGRANLSLQEFLNVLGQNGVAPETLRDFTRVGIAW 149
Query: 162 TDVV 165
+ V
Sbjct: 150 REYV 153
>gi|59801983|ref|YP_208695.1| hypothetical protein NGO1656 [Neisseria gonorrhoeae FA 1090]
gi|194099536|ref|YP_002002666.1| Cell-binding factor, putative [Neisseria gonorrhoeae NCCP11945]
gi|239999742|ref|ZP_04719666.1| Cell-binding factor, putative [Neisseria gonorrhoeae 35/02]
gi|240014900|ref|ZP_04721813.1| Cell-binding factor, putative [Neisseria gonorrhoeae DGI18]
gi|240017348|ref|ZP_04723888.1| Cell-binding factor, putative [Neisseria gonorrhoeae FA6140]
gi|240081490|ref|ZP_04726033.1| Cell-binding factor, putative [Neisseria gonorrhoeae FA19]
gi|240113770|ref|ZP_04728260.1| Cell-binding factor, putative [Neisseria gonorrhoeae MS11]
gi|240116505|ref|ZP_04730567.1| Cell-binding factor, putative [Neisseria gonorrhoeae PID18]
gi|240118728|ref|ZP_04732790.1| Cell-binding factor, putative [Neisseria gonorrhoeae PID1]
gi|240121970|ref|ZP_04734932.1| Cell-binding factor, putative [Neisseria gonorrhoeae PID24-1]
gi|240124267|ref|ZP_04737223.1| Cell-binding factor, putative [Neisseria gonorrhoeae PID332]
gi|240126477|ref|ZP_04739363.1| Cell-binding factor, putative [Neisseria gonorrhoeae SK-92-679]
gi|240128940|ref|ZP_04741601.1| Cell-binding factor, putative [Neisseria gonorrhoeae SK-93-1035]
gi|254494530|ref|ZP_05107701.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|260439738|ref|ZP_05793554.1| Cell-binding factor, putative [Neisseria gonorrhoeae DGI2]
gi|268595556|ref|ZP_06129723.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268597591|ref|ZP_06131758.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268599842|ref|ZP_06134009.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268602176|ref|ZP_06136343.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268604442|ref|ZP_06138609.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682896|ref|ZP_06149758.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268685062|ref|ZP_06151924.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268687326|ref|ZP_06154188.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291042988|ref|ZP_06568726.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|293398329|ref|ZP_06642520.1| cell-binding factor [Neisseria gonorrhoeae F62]
gi|59718878|gb|AAW90283.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193934826|gb|ACF30650.1| Cell-binding factor, putative [Neisseria gonorrhoeae NCCP11945]
gi|226513570|gb|EEH62915.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548945|gb|EEZ44363.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268551379|gb|EEZ46398.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268583973|gb|EEZ48649.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268586307|gb|EEZ50983.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268588573|gb|EEZ53249.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268623180|gb|EEZ55580.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268625346|gb|EEZ57746.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268627610|gb|EEZ60010.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291013127|gb|EFE05096.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291611253|gb|EFF40337.1| cell-binding factor [Neisseria gonorrhoeae F62]
Length = 288
Score = 38.7 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + S +LF+ T+ +V QK+ S S+
Sbjct: 5 ILTSVALLACSGSLFA----QTLATVNGQKIDSSVIDAQVAAFRAENSRA---------E 51
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L + +L+N V + Q ++ + L+ +A+ K F +
Sbjct: 52 DTPQLRQSLLENEVVNTVVAQEVKRLKLDRS-AEFKDALAKLRAEAKKSGDDKKPSFKTV 110
Query: 141 LAR 143
Sbjct: 111 WQA 113
>gi|257458242|ref|ZP_05623392.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
gi|257444352|gb|EEV19445.1| conserved hypothetical protein [Treponema vincentii ATCC 35580]
Length = 506
Score = 38.7 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 21/227 (9%), Positives = 81/227 (35%), Gaps = 15/227 (6%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSS---FIN 58
+ ++K + + I LV + F+ + + + + +++ +++ F+
Sbjct: 1 MAGVKKNTLAIGSIIILVFSVITFVFIPAAGGQAGSNAKTMLGKWKNKRLDYTADGLFLR 60
Query: 59 SWKQELGMISQKIGFVVNSERARSVGLDKKILD-----NLVSGATLDQFIEDIGLEADHG 113
+ ++L ++ G++ + +A+ ++++I+ +++ A + + G +
Sbjct: 61 EY-RQLRSSAEMRGYLRSDNKAQQEFMERQIMRTAFNASMIQLAAQE-EALNAGFYLPNK 118
Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
+ + + +S ++ ++ + Y L+ + G
Sbjct: 119 NINRAL--ISFYTDSTGAYSEKLYNETSEQQRL---AYRRQVIDYLTAQRYIEDNFGTYD 173
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKY 220
L + F + + + N V + + ++ E++
Sbjct: 174 NIFGLKTSSAETAFVQKMAEKERIFNYVVFEESQFPQEKIREYGEEH 220
>gi|109947398|ref|YP_664626.1| hypothetical protein Hac_0844 [Helicobacter acinonychis str.
Sheeba]
gi|109714619|emb|CAJ99627.1| conserved hypothetical protein [Helicobacter acinonychis str.
Sheeba]
Length = 404
Score = 38.7 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 44/137 (32%), Gaps = 5/137 (3%)
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ E+ + + D L++ +Q IE + + D R+ E+A G
Sbjct: 165 QIQEEQEKFKVSKNQARDRLIADRIKNQEIERLKIHIDDDRLDQEMAMMAQQQG----MD 220
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
D F + EG + K Y D + L +++ + ++ + +
Sbjct: 221 LDHFKQMIMAEG-HYKTYRDQLKEHLEMQELLRNILLTNVDTSSETKMREYYNKHKEQFS 279
Query: 194 YIVLNNRHVPAIADPSN 210
+ + +
Sbjct: 280 IPMEVETVRYSSTSQED 296
>gi|88803460|ref|ZP_01118986.1| peptidyl-prolyl cis-trans isomerase [Polaribacter irgensii 23-P]
gi|88781026|gb|EAR12205.1| peptidyl-prolyl cis-trans isomerase [Polaribacter irgensii 23-P]
Length = 460
Score = 38.7 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 36/125 (28%), Gaps = 13/125 (10%)
Query: 6 RKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELG 65
+K + + K+ L + I+ + + G V V + + + +
Sbjct: 3 QKKTTSKYTKVLLTAVLFSVSIFQVHAQKIKIDG---VAVVIGKNIV---LDSDIAKFKQ 56
Query: 66 MISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLF 125
I + + L+ L+ L + V ++ RS F
Sbjct: 57 EIELRSEGKITITDCEM-------LEELMQQKLLSHHAVIDSVTVSDAEVSNKVERSIQF 109
Query: 126 HGKDN 130
++
Sbjct: 110 FTQEY 114
>gi|315648622|ref|ZP_07901719.1| hypothetical protein PVOR_25368 [Paenibacillus vortex V453]
gi|315276001|gb|EFU39349.1| hypothetical protein PVOR_25368 [Paenibacillus vortex V453]
Length = 1051
Score = 38.7 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 29/412 (7%), Positives = 107/412 (25%), Gaps = 9/412 (2%)
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFV 169
+ I + KF + + + + Y + + ++
Sbjct: 549 SDEHIQKVIHKIFRPDNAYIKFDFQNGRPQKSAILTTSSIDIAKRYYQAIKEMTQDPEWL 608
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
+ + + V + + + + A
Sbjct: 609 TREFAGHPIRTGRTIEDPDFPRVAITYSMQENEENSKQIQDEMKGIIKDYNDYYRTAWSI 668
Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
+ I D++ + + + +L + + +
Sbjct: 669 EDIERYNGDINNRLARKKAEFKQLGKQIDLVIVVDRLLTGFDAPTIQTLFVDRNLSYANL 728
Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
++ + + + +F K + ++ D+ + + + +++ ++
Sbjct: 729 IQAFSRTNRT----YPDKKKGLIVTFRKPASMEQNVKDATKLYSHAQEESTLVYPTYDES 784
Query: 350 IAHVSNIKPSFTVSFQEVKK--DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ T + ++ + + +E E + DE+ +
Sbjct: 785 KKRFQKAHKTLTKLVPNPYDINEHSDLEARIEFVKAFQELNNSFEALITYDDYNDEMEKS 844
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ L ++ G K + + D D+T+ + D
Sbjct: 845 TALKEQAKTLEEYIGVYNTVKGSLIVEGDDDEGPGPNFSDIEFYGDNTIKIYDIDST--Y 902
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRD 519
I + + + + +++K + +K +E V ++ + + +
Sbjct: 903 IDRLLESYLANNQNIRDEIEKALQKLKKSEIVKGVYRAILNAIDTKEIDAEE 954
>gi|163739707|ref|ZP_02147115.1| leucyl aminopeptidase [Phaeobacter gallaeciensis BS107]
gi|161386937|gb|EDQ11298.1| putative chaperone surA [Phaeobacter gallaeciensis BS107]
Length = 421
Score = 38.7 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 33/124 (26%), Gaps = 17/124 (13%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V+V V + + + KK ++L+
Sbjct: 47 PAVTVNDAVVTNYELQQ-----RARFLTLLRDPGDPQ--------KKAREDLILDRLKLD 93
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSR 161
+ G+E + + S F++ L + G+ + D ++
Sbjct: 94 VLAQAGIEPTEEEIVEGMTEL----AGRANLSLQEFLNVLGQNGVAPETLRDFTRVGIAW 149
Query: 162 TDVV 165
+ V
Sbjct: 150 REYV 153
>gi|330991867|ref|ZP_08315816.1| Cell-binding factor 2 [Gluconacetobacter sp. SXCC-1]
gi|329760888|gb|EGG77383.1| Cell-binding factor 2 [Gluconacetobacter sp. SXCC-1]
Length = 305
Score = 38.7 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 8/71 (11%), Positives = 19/71 (26%), Gaps = 10/71 (14%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + SV Q + + + + + + +L+ LV
Sbjct: 46 DQNPVLASVNGQDIRLNDVRQAMASMPEQLRK----------LPDNIIVPILLNQLVDQR 95
Query: 98 TLDQFIEDIGL 108
+ GL
Sbjct: 96 AIQIAAAKAGL 106
>gi|327402946|ref|YP_004343784.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
DSM 16823]
gi|327318454|gb|AEA42946.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Fluviicola taffensis
DSM 16823]
Length = 459
Score = 38.3 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 13/103 (12%)
Query: 21 LFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
L + FL +F+ + VG V +S + + Q + +
Sbjct: 5 LLISFLFTLAFTNVFAQPKMIDKVIGQVGDNIVLYSELE----GQKQSLKQNSAVPESID 60
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
+ +L+ ++ L E ++ +V E+
Sbjct: 61 QCV-------LLEQMLYNFLLVNQAELDSIQISDEQVDAEMEN 96
>gi|167616017|ref|ZP_02384652.1| peptidylprolyl isomerase [Burkholderia thailandensis Bt4]
gi|257142572|ref|ZP_05590834.1| peptidylprolyl isomerase [Burkholderia thailandensis E264]
Length = 265
Score = 38.3 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 4/107 (3%)
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+ F + + L + N + + VF P V + + +
Sbjct: 146 QTFETLARELSNCPSSAVGGNLGQLLRGDSVPEFDAAVFDTPELGVLPRLVNTRFGFHIV 205
Query: 575 KVTNSKVGPVQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ G D ++L Q + + + L S +
Sbjct: 206 RIERRVPGDPVPFDAVAADIAAFLAQRVRHKAIQQYVTILASGARIE 252
>gi|167577892|ref|ZP_02370766.1| peptidylprolyl isomerase [Burkholderia thailandensis TXDOH]
Length = 265
Score = 38.3 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 4/107 (3%)
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+ F + + L + N + + VF P V + + +
Sbjct: 146 QTFETLARELSNCPSSAVGGNLGQLLRGDSVPEFDAAVFDTPELGVLPRLVNTRFGFHIV 205
Query: 575 KVTNSKVGPVQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ G D ++L Q + + + L S +
Sbjct: 206 RIERRVPGDPVPFDAVAADIAAFLAQRVRHKAIQQYVTILASGARIE 252
>gi|83717644|ref|YP_439449.1| peptidylprolyl isomerase [Burkholderia thailandensis E264]
gi|83651469|gb|ABC35533.1| peptidylprolyl isomerase [Burkholderia thailandensis E264]
Length = 250
Score = 38.3 bits (86), Expect = 3.5, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 4/107 (3%)
Query: 515 KNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVF 574
+ F + + L + N + + VF P V + + +
Sbjct: 131 QTFETLARELSNCPSSAVGGNLGQLLRGDSVPEFDAAVFDTPELGVLPRLVNTRFGFHIV 190
Query: 575 KVTNSKVGPVQEKDK----FISYLTQMMNKDLLDSVIAYLKSQYSVT 617
++ G D ++L Q + + + L S +
Sbjct: 191 RIERRVPGDPVPFDAVAADIAAFLAQRVRHKAIQQYVTILASGARIE 237
>gi|269215647|ref|ZP_06159501.1| trigger factor [Slackia exigua ATCC 700122]
gi|269131134|gb|EEZ62209.1| trigger factor [Slackia exigua ATCC 700122]
Length = 555
Score = 38.3 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 2/96 (2%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
++ L L + + + +F +S ++ Q + + A +
Sbjct: 318 ALFELGGRLEGEAPEGMIAEATDD--LYRTFWDSLQRNGVTFDQYLANNGLTVDAFREDV 375
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
K+ D +V LD + G+ V E
Sbjct: 376 KKQAKDTVVQNLALDAYARHAGISVTDDEVRDEFKN 411
>gi|91779615|ref|YP_554823.1| putative peptidyl-prolyl isomerase [Burkholderia xenovorans LB400]
gi|91692275|gb|ABE35473.1| putative peptidyl-prolyl isomerase [Burkholderia xenovorans LB400]
Length = 250
Score = 38.3 bits (86), Expect = 3.6, Method: Composition-based stats.
Identities = 9/111 (8%), Positives = 28/111 (25%), Gaps = 20/111 (18%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ +V + + V FI + G + +++ +V
Sbjct: 2 TAIVRIDDEVVDVGEFIR--------------------LLKLTGQFESLIEQIVRDKLTV 41
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+ G+ + + G + ++ L + +
Sbjct: 42 HAAKKQGITVSADEIQQRADQFRRVRGLHRATDMNQYLDALNVSLDEFEAF 92
>gi|152991687|ref|YP_001357408.1| hypothetical protein SUN_0091 [Sulfurovum sp. NBC37-1]
gi|151423548|dbj|BAF71051.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 273
Score = 38.3 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 12/164 (7%), Positives = 45/164 (27%), Gaps = 25/164 (15%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
++ ++V + + + + + +K G ++ +D L+
Sbjct: 22 NAVALTVDGEAITTNE--------IKKVQRKTGMS-----------KQQAIDLLIQDRLQ 62
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
+ ++ ++ + +IA+ + S L ++G + +Y + + L
Sbjct: 63 KEAMKS--IKISEETIDAKIAQIANLNNI----SIPKMQKMLKKQGTSWSKYRESIRQAL 116
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVP 203
+ + + +
Sbjct: 117 KKERFFKEKISRNITPPSEDQLKLYYETHKEAFAMPTSIRMTEY 160
>gi|29349256|ref|NP_812759.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
VPI-5482]
gi|253570398|ref|ZP_04847807.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
gi|298384796|ref|ZP_06994355.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
1_1_14]
gi|29341164|gb|AAO78953.1| peptidyl-prolyl cis-trans isomerase [Bacteroides thetaiotaomicron
VPI-5482]
gi|251840779|gb|EES68861.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 1_1_6]
gi|298261940|gb|EFI04805.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Bacteroides sp.
1_1_14]
Length = 460
Score = 38.3 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 14/181 (7%), Positives = 44/181 (24%), Gaps = 12/181 (6%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
F+V L + + + V VG + + S + L + G
Sbjct: 9 FIVTLVLA-VFANVVTYAQDNVIDEVVWVVGDEAILKSDVEEARMDALYNGRRFEGDPY- 66
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDV 136
I + + + +E + + + + +
Sbjct: 67 ----------CVIPEEIAVQKLFLHQAKLDSIEVSEAEIIQRVDMMTNMYIQQIGSKEKM 116
Query: 137 FVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIV 196
+ ++ L+ + VG ++ + + + + ++
Sbjct: 117 EEYFNKTATQIRETLRENARDGLTVQKMQQKLVGDIKVTPAEVRRYFKDLPQDSIPYIPT 176
Query: 197 L 197
Sbjct: 177 Q 177
>gi|194208939|ref|XP_001914691.1| PREDICTED: centromere protein E, 312kDa [Equus caballus]
Length = 2700
Score = 38.3 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 45/481 (9%), Positives = 132/481 (27%), Gaps = 9/481 (1%)
Query: 52 PFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEAD 111
++ Q I NSE + +++ + L + + IE LE
Sbjct: 1514 TNEELQKKIQEFHEEQEQFISIEENSETQEKMSELEQLKEQLKAEELSLRSIEGERLELT 1573
Query: 112 H--GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
EI + + + + R + ++ + ++ M V
Sbjct: 1574 ERLQESQEEIKVIMKERDELKRVQEALQMERDQLKENIKEIVAEIQELQEEEYQLLKMKV 1633
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
+ + + E + + +V + + +
Sbjct: 1634 VSEIQEKMCEMEYLKKQSEAQKSTLENIEMENVRLTQRLQENLEEMRCVTKERDDLRSVE 1693
Query: 230 KRISYILFDVHEKEKKIEISNDELQAE---YEKNKEKYFSPEIRTVEQLVFPNQKEADEA 286
+ + + E ++ + E Q E + +++ + E + + +
Sbjct: 1694 ETLKVERDQLKENLRETITRDLEKQEELKIAHMHLKEHQETIDKLREVVSEKTDEILNMQ 1753
Query: 287 FQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSF 346
E+ + L + + I D + + + S
Sbjct: 1754 IHLENTNTALKAQNLEKQEELRIAHMHLKEHQEIIDKLRGIVSEKTDEIANMQMDLENSN 1813
Query: 347 GYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISR 406
+ + +K + F+ + Q ++++ K+ + + +++
Sbjct: 1814 TKLQEKIQELKANEHQLFKLKEDVSETQKKMSEIERLKKQFKAQSLTLDKIEMENLNLAQ 1873
Query: 407 REKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWV 466
+ ++ V +D K A+ + L + + L +
Sbjct: 1874 KLHENLEEMKSV-MKERDNLRKVEEALKLERDQLKANLQETIARDLETQQEL---KIARM 1929
Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+KE D+ E V + K + + + + E K+ + +++
Sbjct: 1930 HLKEHQETIDKFRERVSEKTTQISNIQKDLNKAKDELQEKIRELQKKELQLLKVKEDVSK 1989
Query: 527 S 527
+
Sbjct: 1990 T 1990
>gi|330722348|gb|EGH00205.1| hypothetical protein imdm_1574 [gamma proteobacterium IMCC2047]
Length = 260
Score = 38.3 bits (86), Expect = 3.7, Method: Composition-based stats.
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 14/66 (21%)
Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
+V+V + + G + L + LVS L Q
Sbjct: 8 LVTVNGVVITREQIERELQSA-------TGDDPDK-------LRDNAIRALVSRELLLQE 53
Query: 103 IEDIGL 108
+ GL
Sbjct: 54 AVNWGL 59
>gi|297296382|ref|XP_001113236.2| PREDICTED: centrosomal protein of 152 kDa-like [Macaca mulatta]
Length = 1656
Score = 38.3 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 45/549 (8%), Positives = 152/549 (27%), Gaps = 21/549 (3%)
Query: 76 NSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
+ L ++ L L +L + +G+ I + + K
Sbjct: 463 TMSENMNKALQEE-LTELKDEISLYESAAKLGIHPSDSEGELNIELTESYVDLGIK--KV 519
Query: 136 VFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYI 195
+ + +++ + +K + + +++ + + +
Sbjct: 520 NWKKSKVNSIVQQEDPNEELSKDEFILKLKAEVQRLLGSNSMKRRLVSQLQNDLKDCHKK 579
Query: 196 VLNNRHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + V + N + I + + E ++ ++
Sbjct: 580 IEDLHQVKRDEKSIEVETKTDTSEKPKNQLWLESSTSDIVRDDILLLKNEIQVLQQQNQE 639
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
E E+ + Q+V + EA ++ + A + S ++
Sbjct: 640 LKETEEKLRNTNQDLCNQMRQMVQDFDHDKREAVDRCERTYQQHHEAMKTQIRESLLAKH 699
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
+ K+ + + + ++ ++ V + ++K
Sbjct: 700 ALEKQQLFEAYERTHLQLRSELDK----VNKEMTAVQECYLEVCREKDHLESTLRKTTEK 755
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ + + ++ E L ++ + + V + K + I
Sbjct: 756 EQQTQEKIKEKLIQQLEKEWQSKLDQTIKAMKTKTSDRGSQTDQVTTSDVISKKEMAIMI 815
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
++ ++ + ++ ++ + + + + ++ +
Sbjct: 816 EEQKCIIQQHLEQEKDIAIKGAMKKLEIELELKHCENIAKQVEIAVQNARQRWLGELP-E 874
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
+ +A Q E E + I + + +N G + ++
Sbjct: 875 LAEYQALVRAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMKKNILPGTELEEKIH 934
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPV--QEKDKFISYLTQMMNKDLLDSVIAYLK 611
S + ++N VV + +K +EK + I + Q N+ + +
Sbjct: 935 SLQ----RELELKNEEVPVVIRAELAKARSEWNKEKQEEIRRI-QEQNEQDYRQFLDDHR 989
Query: 612 SQYSVTVHD 620
+ +++
Sbjct: 990 N----KINE 994
>gi|85705703|ref|ZP_01036800.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. 217]
gi|85669693|gb|EAQ24557.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Roseovarius sp. 217]
Length = 304
Score = 38.3 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 24/83 (28%), Gaps = 10/83 (12%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+L + + A + S + + +VG + + ++
Sbjct: 31 ILVTGLALTSPATAQDTPSPETVMATVGGTDITLG----HMLAVRAALPEQFDQTPPDA- 85
Query: 80 ARSVGLDKKILDNLVSGATLDQF 102
L +L+ L+ L Q
Sbjct: 86 -----LFSGVLEQLIQQELLVQA 103
>gi|121608769|ref|YP_996576.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
eiseniae EF01-2]
gi|121553409|gb|ABM57558.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Verminephrobacter
eiseniae EF01-2]
Length = 261
Score = 38.3 bits (86), Expect = 3.8, Method: Composition-based stats.
Identities = 10/119 (8%), Positives = 38/119 (31%), Gaps = 1/119 (0%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLT-TNQINRMDNENKFFGYDGISQVFSGPVE 558
+ ++ K+G F DI K + + + + +
Sbjct: 143 KEADAKAIIAAIKKGAKFEDIAKKQSKDPGSGAKGGDLGWASPASYVSEFTEALIKLDQG 202
Query: 559 MVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
+ P+++ + V ++ + + + + + + Q + + L+++ +
Sbjct: 203 KMTDAPVKSQFGWHVIRLDDMRPIQLPKLEDVKPQVAQQLLQQKQAKYQEELRAKAKIE 261
>gi|325186815|emb|CCA21360.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 2058
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 48/559 (8%), Positives = 138/559 (24%), Gaps = 32/559 (5%)
Query: 54 SSFINSWKQELGMISQKI--GFVVNSERARSVGLDKKILDNLVSGAT-LDQFIEDIGLEA 110
Q+ + +I + + + + + Q E +
Sbjct: 637 EEQKERLNQQRKREAAQIVRRENATTRFRALEARKESETERMEREKSRFLQQAEATHILY 696
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ ++ + + +++ + L
Sbjct: 697 FDKEQDAFVRNQ-----EEENLAKEKIEFTKSKDMFQSDTTEWNTNMALWSKHRANWSEH 751
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
+ + F + N A ++ + + + P +
Sbjct: 752 HNPAVSKDIANEWILKFYGIYYSKVDNINGTEGIDAQVPPELVKLHAKMVELQEQEPGFL 811
Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
D + E + K +++ E +Q KE + +
Sbjct: 812 DEEGTAVDDEWSKLAKEREHWASDRANMKREDEMCKDEDVRYKQEHEYVSKEVEAREAKI 871
Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
+K +Q+ ++Q S I + D K I
Sbjct: 872 AVVEKDMQMLQQQIHSRHKIIAQRLQRHQALDQEFEKEWQVSLKNRTNGTKIRLGAHQTR 931
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ + + + ++ + +A+ LEE +E +
Sbjct: 932 ISRTEKRCELFLDQLQRQQQSQRMLLFKRATL--------LEERSQDTQMFEEHQEDSHV 983
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKE 470
+ + A + + + L V + P S++ +M +
Sbjct: 984 ALEACQNARALTPEYINRMEADMKNRSEELKSVMESNKPTSQEGGDLDERDGFM----NK 1039
Query: 471 SIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLT 530
R E+ ++ + K + + + +E ++ ++
Sbjct: 1040 VRQQRTEYQNELKQQLEALEREGKLCVSLLERIQKYQAALDEEIED---------GAIED 1090
Query: 531 TNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKF 590
T N + ++K +V + I + ++V+ + +E +
Sbjct: 1091 TLIANFVSLKSKEEKLLKEEEVLREEKKRSIQTLINDAGTWVLKAIHEHSKRKKEEASRL 1150
Query: 591 ISYLTQMMNKDLLDSVIAY 609
+ Q L ++ +
Sbjct: 1151 ---VGQAQRAAELQKLVQH 1166
>gi|308388554|gb|ADO30874.1| hypothetical protein NMBB_0386 [Neisseria meningitidis alpha710]
gi|325136920|gb|EGC59517.1| hypothetical protein NMBM0579_0318 [Neisseria meningitidis M0579]
Length = 288
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + S +LF+ T+ +V QK+ S S+
Sbjct: 5 ILTSVALLACSGSLFA----QTLATVNGQKIDSSVIDAQVAAFRAENSRA---------E 51
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L + +L+N V + Q ++ + L+ +A+ K F +
Sbjct: 52 DTPQLRQSLLENEVVNTVVAQEVKRLKLDRS-AEFKNALAKLRAEAKKSGDDKKPSFKTV 110
Query: 141 LAR 143
Sbjct: 111 WQA 113
>gi|302670035|ref|YP_003829995.1| hypothetical protein bpr_I0668 [Butyrivibrio proteoclasticus B316]
gi|302394508|gb|ADL33413.1| hypothetical protein bpr_I0668 [Butyrivibrio proteoclasticus B316]
Length = 229
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 41/145 (28%), Gaps = 20/145 (13%)
Query: 5 IRKASRTWVAKIFLV-VLFVPFLIWG--LSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
++K++ VA I + + + F G S +S V++V + + F +
Sbjct: 1 MKKSAGKAVAVIIIANIFLIMFAFCGHIFSKFTYSDHLDEKVITVDDKDITLREFG-YYI 59
Query: 62 QELGMISQKIGFVVNSE----------------RARSVGLDKKILDNLVSGATLDQFIED 105
E+ Q + + E + K ++ ++ +
Sbjct: 60 YEVEAFVQNQALLYDPENPGLWWNTHFSAGMDSQFVCDYAKKVAINMCIADEIYYRQALS 119
Query: 106 IGLEADHGRVWGEIARSPLFHGKDN 130
GL + +
Sbjct: 120 QGLSLTSNEEAQVLDDVSNLINNMD 144
>gi|295700334|ref|YP_003608227.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1002]
gi|295439547|gb|ADG18716.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1002]
Length = 250
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 9/111 (8%), Positives = 28/111 (25%), Gaps = 20/111 (18%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ +V + + V FI + G + +++ +V
Sbjct: 2 TAIVRIDDEVVDVDEFIR--------------------LLKLTGQFESLIEQIVRDKLTV 41
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+ G+ + + G + ++ L + +
Sbjct: 42 HAAKKQGVTVSADEIQQRADQFRRVRGLHRAADMNHYLDALHVSLDEFEVF 92
>gi|212639747|ref|YP_002316267.1| Hybrid signal transduction histidine kinase [Anoxybacillus
flavithermus WK1]
gi|212561227|gb|ACJ34282.1| Hybrid signal transduction histidine kinase [Anoxybacillus
flavithermus WK1]
Length = 962
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 37/563 (6%), Positives = 136/563 (24%), Gaps = 29/563 (5%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ ++ + + + + + + + +++L+N+V
Sbjct: 274 NEELLAQQDELEIQQAELEQALEAMQAREKELKRYNDFIQGLSNSLDRQEVLNNIVHNIA 333
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKM 158
+ G+ F I + + +
Sbjct: 334 RVMEADR-GMIV-----------LMNAEKTHASFGLSASGVEQFLTYIYNGLHQRLFEQK 381
Query: 159 LSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFE 218
+ + F + + + S+ + ++
Sbjct: 382 KPFMLKRELTASEKGYHEETMFVHDVFLPVLSNENDVQAILVFSRFGGPFSDEDMQEYVG 441
Query: 219 KYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP 278
K + + + E + I + E + +
Sbjct: 442 LTKQISISLQKIALYEQSEQARETVQHILNTVQEGIHFVDSKGHSVMVNKQMVALLQKET 501
Query: 279 NQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDF 338
+ +++ +G A ++ + F+ + + + +
Sbjct: 502 IAELEGASYEQWARGLVEQSDAGKKLCDYLRAII--FNGDEDVEPFVYHLPQKRKVIQVY 559
Query: 339 TPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASE---------KVKEDYK 389
++ + + + ++K + + + + +
Sbjct: 560 AKPLYRNGERQGTVFVHRDITKQFEVDQMKSEFVSTVSHELRTPLSSVLGFTELMLTKEL 619
Query: 390 RLEEFLALGTSMDEISRREKIVSIDLPLVDF--AGKDVKGKEVAAIPYKEQLLFRVFGKD 447
+ E T++ + ++R + D V +GK K+ I + + +
Sbjct: 620 KPERQKKYLTTIYQEAKRLTALINDFLDVQRMESGKQTYDKKYEDIVSIIENVIETQKVN 679
Query: 448 DPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLV 507
+ + H + + + + + + +K + + + +L
Sbjct: 680 TKIHQFHVQKETNNTTV---LGDRDKLAQVFTNLISNAIKYSPEGGNITVRIYERGTRLC 736
Query: 508 LEYSKEGKNF-RDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIE 566
++ EG + NL + +R G + ++ V
Sbjct: 737 VDVQDEGLGIPEEAIPNLFTKFYRVDNSDRRRIGGTGLGLAIVKEIVKAHEGEVSVTSEL 796
Query: 567 NGLSYVVFKVTNSKVGPVQEKDK 589
S + + +E ++
Sbjct: 797 KKGSTFTVSLPLVVLASEEEGER 819
>gi|45657364|ref|YP_001450.1| hypothetical protein LIC11489 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45600603|gb|AAS70087.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 444
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 28/263 (10%), Positives = 76/263 (28%), Gaps = 20/263 (7%)
Query: 11 TWVAKIFLVVLFVPFLIWGLSDALF---SVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
+ I + L V FL + F S + +G +P + + K+E
Sbjct: 51 GFFLFILVGGLIVTFLPGDAEKSFFDVISGKSNVNAGKIGDYSIPM-DYYQAAKRECYFQ 109
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPL--- 124
+ I + + + + + +LV +Q + G A + E++
Sbjct: 110 YRNIAPSLAEDPSTLQSCAFQTIRSLV---VTEQIAKATGFSASETGIREELSDEARRIY 166
Query: 125 --------FHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSN 176
+ + + ++ L + + ID + ++ +
Sbjct: 167 RESVNGAGYSDDEVRKPEVIYKQILNSAPMQYR--IDRKNASIIYDTLLNSDLKKTDGEI 224
Query: 177 LLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYIL 236
+ ++ F R V Y + P + + + + + +
Sbjct: 225 AVQKESTSARFRLRIVSYTDDQLSKLAEKEAPISEEILRAKYENEKKEGKLPKNTDGKEI 284
Query: 237 FDVHEKEKKIEISNDELQAEYEK 259
K E++++ ++
Sbjct: 285 SFEERKNFLKSKLLLEIRSKSQE 307
>gi|153872834|ref|ZP_02001612.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beggiatoa sp. PS]
gi|152070703|gb|EDN68391.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Beggiatoa sp. PS]
Length = 253
Score = 38.3 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 9/93 (9%), Positives = 23/93 (24%), Gaps = 13/93 (13%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
F + + + + + + + + K ++ +
Sbjct: 11 FSGVLFMTVAVHATPNEPLAIINGEVLTQQDYDDYVKARTTQTQRRATPEI--------- 61
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+L+ LV L Q LE +
Sbjct: 62 ----LLEELVQRELLKQDALKKKLEQHPDFIRK 90
>gi|146339244|ref|YP_001204292.1| putative peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
gi|146192050|emb|CAL76055.1| putative Peptidylprolyl isomerase [Bradyrhizobium sp. ORS278]
Length = 308
Score = 38.3 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
S + +V ++ S M+ + +G + ++ IL ++
Sbjct: 37 QASADPVIATVNGSEIHESEL--------AMVDEIVGRNLPTQDRIER--RDTILKMMID 86
Query: 96 GATLDQFIEDIGLEADHGRVWGE 118
L + + D +
Sbjct: 87 TILLSDIARERKI-VDEADIARR 108
>gi|167756723|ref|ZP_02428850.1| hypothetical protein CLORAM_02264 [Clostridium ramosum DSM 1402]
gi|167702898|gb|EDS17477.1| hypothetical protein CLORAM_02264 [Clostridium ramosum DSM 1402]
Length = 332
Score = 38.3 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 29/256 (11%), Positives = 70/256 (27%), Gaps = 17/256 (6%)
Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
+ + E + + VD + + + Q G +
Sbjct: 63 KSSYFNAVLQQLMDQKFPIDEDMETDANETVDQIQTYYENQYGDNAETQLQTALSSSGFN 122
Query: 448 DPLSKDHTVALPDG--SYMWVQIKE-----SIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
+ +++ +++ + + +K V+
Sbjct: 123 SLDEYRENMVRVYQRCNFLLAYVEKNFDEVFDDYYTQASPREASLIKVSMTDVENPTADE 182
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ------INRMDNENKFFGYDGISQVFS 554
+ V K+F DI K+ T ++ ++ FG D +++ +
Sbjct: 183 TAKLSEVTALLSSSKSFGDIAKDYSDDTNTNKNKGKLGIVDTTSGLSQTFGSDVETKILA 242
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL-KSQ 613
I+ Y KVT K + L+ D ++Y+
Sbjct: 243 LASGETSEA-IKGTDGYYFVKVT--STDKDSIKKEIKKDLSIDTPLIAYDKYMSYIVYQS 299
Query: 614 YSVTVHDNLIQRYLDG 629
Y+V D ++ ++
Sbjct: 300 YNVKYDDKNTEKIINN 315
>gi|257413404|ref|ZP_04742945.2| hypothetical protein ROSINTL182_06154 [Roseburia intestinalis
L1-82]
gi|257203688|gb|EEV01973.1| hypothetical protein ROSINTL182_06154 [Roseburia intestinalis
L1-82]
Length = 267
Score = 38.3 bits (86), Expect = 4.1, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 41/134 (30%), Gaps = 15/134 (11%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPF--SSFINSWKQ--E 63
SR A + + + ++ G + TV ++ + V ++F + Q
Sbjct: 16 NSRKITALLLSSAMALS-VLTGCGGV----NKDKTVATLNGEPVKLGVANFAARFGQAGA 70
Query: 64 LGMISQKIGFVVNSERAR------SVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
+ G V + ++D+L L +++ +
Sbjct: 71 DDFYTAYFGKNVWTSDLYGNGTTGQDNFKDSVMDSLEDMYVLQLHMDEYNVSITDDEKAA 130
Query: 118 EIARSPLFHGKDNK 131
A + F ++K
Sbjct: 131 LTAAAAQFMEDNSK 144
>gi|75910422|ref|YP_324718.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anabaena variabilis
ATCC 29413]
gi|75704147|gb|ABA23823.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Anabaena variabilis
ATCC 29413]
Length = 252
Score = 38.3 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
A +L L+ ++ G +F + K L M ++ D +
Sbjct: 138 RELAEELQLQIAEGG-SFEQLAKEYSV-LDDRLVNGMMGPISRGTMPDKLRAAIDVATPG 195
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
PIE Y +F+V + + L Q + +L + +A + +V +
Sbjct: 196 QLVGPIEIDGRYGLFRVEQFLPASLDDI-----QLKQALQNELFEKWLAEKIQKLTVKL 249
>gi|325132900|gb|EGC55577.1| hypothetical protein NMBM6190_0280 [Neisseria meningitidis M6190]
Length = 288
Score = 38.3 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + S +LF+ T+ +V QK+ S S+
Sbjct: 5 ILTSVALLACSGSLFA----QTLATVNGQKIDSSVIDAQVAAFRAENSRA---------E 51
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L + +L+N V + Q ++ + L+ +A+ K F +
Sbjct: 52 DTPQLRQSLLENEVVNTVVAQEVKRLKLDRS-AEFKNALAKLRAEAKKSGDDKKPSFKTV 110
Query: 141 LAR 143
Sbjct: 111 WQA 113
>gi|313903082|ref|ZP_07836476.1| trigger factor [Thermaerobacter subterraneus DSM 13965]
gi|313466584|gb|EFR62104.1| trigger factor [Thermaerobacter subterraneus DSM 13965]
Length = 493
Score = 38.3 bits (86), Expect = 4.3, Method: Composition-based stats.
Identities = 11/94 (11%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 56 FINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRV 115
N +++ + + + + L + ++++ + LD + G+EA +
Sbjct: 320 LENRLRRQGDSLESYLQATNQTREQLAESLRPQAVEDVRTDLVLDAVAKAEGIEATDAEI 379
Query: 116 WGEIARSPL-----FHGKDNKFSHDVFVSRLARE 144
E+ + +F+ V +A
Sbjct: 380 EAELRSLAAAMGQPYQRVRQQFTRSGLVLDVAEN 413
>gi|303304991|ref|NP_001181927.1| centrosomal protein of 152 kDa isoform 1 [Homo sapiens]
Length = 1710
Score = 38.3 bits (86), Expect = 4.3, Method: Composition-based stats.
Identities = 49/544 (9%), Positives = 144/544 (26%), Gaps = 18/544 (3%)
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
A ++ L L +L + +G+ I + + K +
Sbjct: 464 ANMNKALQEELTELKDEISLYESAAKLGIHPSDSEGELNIELTESYVDLGIK--KVNWKK 521
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
+ E++ + +K + + +++ + + + + +
Sbjct: 522 SKVTSIVQEEDPNEELSKDEFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDL 581
Query: 200 RHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
V + N + + + + E ++ ++ E
Sbjct: 582 HQVKKDEKSIEVETKTDTSEKPKNQLWPESSTSDVVRDDILLLKNEIQVLQQQNQELKET 641
Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
E + Q+V + EA ++ + A + S ++ + K
Sbjct: 642 EGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKTQIRESLLAKHALEK 701
Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
+ + + + ++ + + + K Q
Sbjct: 702 QQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREK---DNLELTLRKTTEKEQQTQ 758
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
K EK+ + ++ + T + S V + K + I ++
Sbjct: 759 EKIKEKLIQQLEKEWQSKLDQTIKAMKKKTLDCGSQT-DQVTTSDVISKKEMAIMIEEQK 817
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
+ + ++ ++ + + + + ++ +
Sbjct: 818 CTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEIAVQNAHQRWLGELP-ELAEY 876
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ KA Q E E + I + + +N G + ++ S
Sbjct: 877 QALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMRKNILPGKELEEKIHSLQK 936
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-LTQMMNKDLLDSVIAYLKSQYSV 616
E ++N VV + +K K+K Q N+ + ++
Sbjct: 937 E----LELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHRN---- 988
Query: 617 TVHD 620
+++
Sbjct: 989 KINE 992
>gi|325265262|ref|ZP_08131987.1| hypothetical protein HMPREF0240_04276 [Clostridium sp. D5]
gi|324029441|gb|EGB90731.1| hypothetical protein HMPREF0240_04276 [Clostridium sp. D5]
Length = 354
Score = 38.3 bits (86), Expect = 4.3, Method: Composition-based stats.
Identities = 22/198 (11%), Positives = 46/198 (23%), Gaps = 19/198 (9%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWK 61
+ RK + ++ F + L+ S++ + V VG K+ +
Sbjct: 1 MGQFRKR-------VMIMAAAGLFAVSSLTGCGRSMNNDAVVAEVGEDKIALGVANFYAR 53
Query: 62 QELGMIS------------QKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLE 109
+ V ++ IL+ L + L Q D +E
Sbjct: 54 MQQAQYETYYAGMMGTTGEAMWAQEVEEDKDYEDTTKASILEALENMYLLKQHAADYKVE 113
Query: 110 ADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFV 169
+ F + +V + + V V
Sbjct: 114 LTDDDKKAINKAAETFVEDNTLEDKEVVSGYEKYVKTFLELATIQTRMNAPMKEGVDEEV 173
Query: 170 GGMRPSNLLLDQAKRFYF 187
+ + Y
Sbjct: 174 SDEEAAQKSMQYVLFSYN 191
>gi|301595770|ref|ZP_07240778.1| peptidyl-prolyl cis-trans isomerase [Acinetobacter baumannii AB059]
Length = 91
Score = 38.3 bits (86), Expect = 4.3, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 11/99 (11%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
K + + L VL S F+ V V + S +
Sbjct: 4 KHLKQFFKATTLAVLISS------SMHSFAQPTDEVVAIVDNSVILKSDLEQGMAEAAHE 57
Query: 67 ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIED 105
+ + V L ++LD L+ + ++
Sbjct: 58 LQAQKKEVPP-----QQYLQFQVLDQLILRQAQLEQVKK 91
>gi|237734442|ref|ZP_04564923.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229382262|gb|EEO32353.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 332
Score = 38.3 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 29/256 (11%), Positives = 70/256 (27%), Gaps = 17/256 (6%)
Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
+ + E + + VD + + + Q G +
Sbjct: 63 KSSYFNAVLQQLMDQKFPIDEDMETDANETVDQIQTYYENQYGDNAETQLQTALSSSGFN 122
Query: 448 DPLSKDHTVALPDG--SYMWVQIKE-----SIPARDRKLEEVLTDVKKDWKTVKTAEEVS 500
+ +++ +++ + + +K V+
Sbjct: 123 SLDEYRENMVRVYQRCNFLLAYVEKNFDEVFDDYYTQASPREASLIKVSMTDVENPTADE 182
Query: 501 SKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ------INRMDNENKFFGYDGISQVFS 554
+ V K+F DI K+ T ++ ++ FG D +++ +
Sbjct: 183 TAKLSEVTALLSSSKSFGDIAKDYSDDTNTNKNKGKLGIVDTTSGLSQTFGSDVETKILA 242
Query: 555 GPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYL-KSQ 613
I+ Y KVT K + L+ D ++Y+
Sbjct: 243 LASGETSEA-IKGTDGYYFVKVT--STDKDSIKKEIKKDLSIDTPLIAYDKYMSYIVYQS 299
Query: 614 YSVTVHDNLIQRYLDG 629
Y+V D ++ ++
Sbjct: 300 YNVKYDDKNTEKIINN 315
>gi|171463167|ref|YP_001797280.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171192705|gb|ACB43666.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 270
Score = 38.3 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 11/96 (11%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
F+ V G + A S + SV + K L
Sbjct: 5 FIAVGIFAGASLGHTWAQQSGLPINAAASVNGVIITNDMVEQGIKAALSQ---------- 54
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
+ S L K +++ + L Q E GL
Sbjct: 55 -GQKDSPELRKAVVEKFIKVLLLSQQAEKDGLANSE 89
>gi|17547900|ref|NP_521302.1| signal peptide protein [Ralstonia solanacearum GMI1000]
gi|17430206|emb|CAD16969.1| putative peptidyl-prolyl isomerase signal peptide protein
[Ralstonia solanacearum GMI1000]
Length = 281
Score = 38.3 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 6/64 (9%), Positives = 15/64 (23%), Gaps = 14/64 (21%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
V V ++ + + G N + + + L++ Q
Sbjct: 35 VVALVNGTRITQEQLDRAI--------AQSGAQANP------QVAQALKQQLIARELFRQ 80
Query: 102 FIED 105
Sbjct: 81 QAAK 84
>gi|325521604|gb|EGD00389.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
TJI49]
Length = 207
Score = 38.3 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 11/68 (16%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ V +P S Q + + S L + + LV+ L
Sbjct: 23 QNIAVVNGTPIPKSRADAMVAQLVQQ-----------GQTDSPQLQQAVRQELVNREILM 71
Query: 101 QFIEDIGL 108
Q G+
Sbjct: 72 QEAIRRGI 79
>gi|227513558|ref|ZP_03943607.1| peptidylprolyl isomerase [Lactobacillus buchneri ATCC 11577]
gi|227083431|gb|EEI18743.1| peptidylprolyl isomerase [Lactobacillus buchneri ATCC 11577]
Length = 293
Score = 38.3 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 30/280 (10%), Positives = 66/280 (23%), Gaps = 42/280 (15%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ W+ I L + + F + +V + K+ S++ +S K
Sbjct: 2 KKWL--IVLAGVLMSFTLAACGS--------KSVATTNGGKITESAYYSSLKGTSSG--- 48
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
K++L ++ L+ + G + V + + +G
Sbjct: 49 -----------------KQVLQQMILNKVLE---KQYGKKVKESAVNKDFNKYKKQYGSS 88
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
F + L + G+ + D L V L Q K + +
Sbjct: 89 -------FNAVLQQNGMTASQLKDSIRSNLLLQQAVRD--NTKFTDAQLKAQFKSYQPKV 139
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
+V + A + K + + I +
Sbjct: 140 TVNQILVSKKSTAETVIKQLKAGKSFSSLAKKYSTDTATKNKGGRISAFDNTNTSLDSNF 199
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
+ K + + N
Sbjct: 200 KKAAFKLKNGDYTKTPVKTQYGYQVIQMVNHPAKGTYKDH 239
>gi|15676260|ref|NP_273394.1| putative cell-binding factor [Neisseria meningitidis MC58]
gi|121635519|ref|YP_975764.1| hypothetical protein NMC1825 [Neisseria meningitidis FAM18]
gi|161870724|ref|YP_001599897.1| cell-binding factor, putative [Neisseria meningitidis 053442]
gi|218768879|ref|YP_002343391.1| putative periplasmi hypothetical protein [Neisseria meningitidis
Z2491]
gi|254805619|ref|YP_003083840.1| Parvulin-like peptidyl-prolyl isomerase [Neisseria meningitidis
alpha14]
gi|304386526|ref|ZP_07368814.1| conserved hypothetical protein [Neisseria meningitidis ATCC 13091]
gi|7225566|gb|AAF40788.1| putative cell-binding factor [Neisseria meningitidis MC58]
gi|120867225|emb|CAM10994.1| putative periplasmi hypothetical protein [Neisseria meningitidis
FAM18]
gi|121052887|emb|CAM09239.1| putative periplasmi hypothetical protein [Neisseria meningitidis
Z2491]
gi|161596277|gb|ABX73937.1| cell-binding factor, putative [Neisseria meningitidis 053442]
gi|254669161|emb|CBA07861.1| Parvulin-like peptidyl-prolyl isomerase [Neisseria meningitidis
alpha14]
gi|254670178|emb|CBA05266.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
meningitidis alpha153]
gi|254671970|emb|CBA04400.1| putative peptidyl-prolyl cis-trans isomerase [Neisseria
meningitidis alpha275]
gi|261391870|emb|CAX49329.1| conserved hypothetical periplasmic protein [Neisseria meningitidis
8013]
gi|304339355|gb|EFM05427.1| conserved hypothetical protein [Neisseria meningitidis ATCC 13091]
gi|316984350|gb|EFV63324.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|319411180|emb|CBY91585.1| conserved hypothetical periplasmic protein [Neisseria meningitidis
WUE 2594]
gi|325128931|gb|EGC51785.1| hypothetical protein NMXN1568_0307 [Neisseria meningitidis N1568]
gi|325130875|gb|EGC53605.1| hypothetical protein NMBOX9930304_0328 [Neisseria meningitidis
OX99.30304]
gi|325134926|gb|EGC57558.1| hypothetical protein NMBM13399_0343 [Neisseria meningitidis M13399]
gi|325138885|gb|EGC61435.1| hypothetical protein NMBES14902_0329 [Neisseria meningitidis
ES14902]
gi|325140994|gb|EGC63500.1| hypothetical protein NMBCU385_0305 [Neisseria meningitidis CU385]
gi|325143031|gb|EGC65383.1| hypothetical protein NMB9615945_0390 [Neisseria meningitidis
961-5945]
gi|325145140|gb|EGC67422.1| hypothetical protein NMBM01240013_0366 [Neisseria meningitidis
M01-240013]
gi|325198965|gb|ADY94421.1| conserved hypothetical protein [Neisseria meningitidis G2136]
gi|325199539|gb|ADY94994.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
gi|325202835|gb|ADY98289.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
gi|325203458|gb|ADY98911.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
gi|325205422|gb|ADZ00875.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
Length = 288
Score = 38.3 bits (86), Expect = 4.6, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + S +LF+ T+ +V QK+ S S+
Sbjct: 5 ILTSVALLACSGSLFA----QTLATVNGQKIDSSVIDAQVAAFRAENSRA---------E 51
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L + +L+N V + Q ++ + L+ +A+ K F +
Sbjct: 52 DTPQLRQSLLENEVVNTVVAQEVKRLKLDRS-AEFKNALAKLRAEAKKSGDDKKPSFKTV 110
Query: 141 LAR 143
Sbjct: 111 WQA 113
>gi|283954124|ref|ZP_06371649.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
414]
gi|283794403|gb|EFC33147.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. jejuni
414]
Length = 273
Score = 37.9 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 8/87 (9%), Positives = 27/87 (31%), Gaps = 9/87 (10%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
++ L + ++TV +V + + + + + + + +
Sbjct: 4 FSLVVAALIAGVALNVNAATVATVNGKSISDAEVSEFFASM---LRGQDFKTLPDNQ--- 57
Query: 83 VGLDKKILDNLVSGATLDQFIEDIGLE 109
K ++ + + Q + LE
Sbjct: 58 ---KKALIQQYIMQDLILQDAKKQNLE 81
>gi|254476741|ref|ZP_05090127.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. R11]
gi|214030984|gb|EEB71819.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Ruegeria sp. R11]
Length = 283
Score = 37.9 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 16/98 (16%)
Query: 5 IRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQEL 64
+RK FL L + + A + + V +V +++
Sbjct: 1 MRKGLT------FLSGLALATALTLPLQATAAPHADTIVATVNGEEITIG----HMIIAR 50
Query: 65 GMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
+ Q+ ++ L ILD L+ L Q
Sbjct: 51 ATLPQQY------QQLPDDVLFDAILDQLIQQTALKQQ 82
>gi|219684780|ref|ZP_03539722.1| conserved hypothetical protein [Borrelia garinii PBr]
gi|219671725|gb|EED28780.1| conserved hypothetical protein [Borrelia garinii PBr]
Length = 500
Score = 37.9 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 26/209 (12%), Positives = 54/209 (25%), Gaps = 16/209 (7%)
Query: 10 RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVGRQKVPF---SSFINSW 60
+ ++ + F G+ D S S Q + + S F
Sbjct: 20 KKVGIWGIFALILIVFGFIIAPLLPGIFDNAHSSGLK--FGSYKGQPIYYKKDSKFAKYV 77
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ S+ G N V I+ + +
Sbjct: 78 NYYSNLYSRLQGNAKNIN--IDYNAWYLAFMKYVEDIAFFDLIKKYNFYISKEMLNKNLL 135
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
RSP + + FS + + + D + + ++V + + L +
Sbjct: 136 RSPEYLDSNGNFSSKRYN---KASDYQKVKIYDDMVENILFSNVKIFLNSNLIFPDSLFN 192
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPS 209
K R + Y+ L+ + S
Sbjct: 193 LIKDMSTVERHISYLSLSYQDFSNKEAIS 221
>gi|149185664|ref|ZP_01863980.1| hypothetical protein ED21_21604 [Erythrobacter sp. SD-21]
gi|148830884|gb|EDL49319.1| hypothetical protein ED21_21604 [Erythrobacter sp. SD-21]
Length = 285
Score = 37.9 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 10/97 (10%), Positives = 28/97 (28%), Gaps = 13/97 (13%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
+ +L L+ ++ +V +++ + + Q
Sbjct: 4 VITLLLCSTLL--VACEGGEAPTGQVAATVDGREITVGQINDELRASGIQADQS------ 55
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
+ L + LD +++ + L D L+
Sbjct: 56 -----NEELANRALDAIINRSILAAEARDRELDTTPA 87
>gi|294775655|ref|ZP_06741163.1| PPIC-type PPIASE domain protein [Bacteroides vulgatus PC510]
gi|294450499|gb|EFG18991.1| PPIC-type PPIASE domain protein [Bacteroides vulgatus PC510]
Length = 441
Score = 37.9 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 42/479 (8%), Positives = 125/479 (26%), Gaps = 73/479 (15%)
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ M G ++ + KR FE + + D
Sbjct: 13 LEMRAQGEVVLSIDGEPVKRSEFEYYFRKSSHRTPLSFLPSFINYKLKVRYAHDMGIDTL 72
Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-------- 276
+ Y + E + Y + +++ + + + +
Sbjct: 73 SVFRRQVDWYRGKLLRTYLADAEKEEQAARRLYLQGEQRLQANDWIKIAHISKYLSQNAS 132
Query: 277 ----FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
+++ D +++L++G F LA + ++G + ++ + I L
Sbjct: 133 RQEEMRVRQQMDSVYEALREGADFATLARRYSDDEACKNVGGVLPWMPVNKNMQEWIDKL 192
Query: 333 A--KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
++ + + G I + + + E+ +E
Sbjct: 193 ESLERNKISAPFYSPMGIHIVKWIDRRQGV-------------------SFEEKREQLLN 233
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
E T + + +++ + + + ++ LL +
Sbjct: 234 YLEKNGNCTWKELSAEQKEELEFRVQEL-----------------QDGLLAAYLSQKYQS 276
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQLV 507
+ + + V + ++ S+ ++
Sbjct: 277 GDEAWNEDDLERFFKQHKSDYAWELPHYRGAVIHCKDRKTASAIKKQLKKKPVSQWKDIL 336
Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
+ + + + + + T I+++ + F +
Sbjct: 337 HTLTGDDASSKVRMEAGVFQIGTNRYIDKLVFKCGSFQPEP------------------- 377
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L Y K GP + + + D+ + LK +Y V ++ +++
Sbjct: 378 DLPYTFVMGKKLKKGPES-YEDVREAVVKDYLTVYEDAWLKDLKQKYKVEINQEVLKTV 435
>gi|310817118|ref|YP_003965082.1| PPIc-type PPIase domain protein [Ketogulonicigenium vulgare Y25]
gi|308755853|gb|ADO43782.1| PPIc-type PPIase domain protein [Ketogulonicigenium vulgare Y25]
Length = 297
Score = 37.9 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 8/101 (7%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG--- 96
+ + SV + + ++ Q V+ + + +++L V+
Sbjct: 39 DTVIASVNGTDITLGEMLLAYSALPQQYRQLPADVLLPSLVDQM-VQQQLLAEQVTEVPA 97
Query: 97 ----ATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
A +Q E + EA + + L D F
Sbjct: 98 AVEMALANQRRELLSYEAVQDLLADAVTDETLQAAYDRAFD 138
>gi|325208828|gb|ADZ04280.1| conserved hypothetical protein [Neisseria meningitidis NZ-05/33]
Length = 288
Score = 37.9 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
+ + S +LF+ T+ +V QK+ S S+
Sbjct: 5 ILTSVALLACSGSLFA----QTLATVNGQKIDSSVIDAQVAAFRAENSRA---------E 51
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSR 140
+ L + +L+N V + Q ++ + L+ +A+ K F +
Sbjct: 52 DTPQLRQSLLENEVVNTVVAQEVKRLKLDRS-AEFKNALAKLRAEAKKSGDDKKPSFKTV 110
Query: 141 LAR 143
Sbjct: 111 WQA 113
>gi|297193962|ref|ZP_06911360.1| lipoprotein [Streptomyces pristinaespiralis ATCC 25486]
gi|197723093|gb|EDY67001.1| lipoprotein [Streptomyces pristinaespiralis ATCC 25486]
Length = 216
Score = 37.9 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 42 TVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
T VG Q++ S+ + + S L + L +L+ + +
Sbjct: 33 TAAVVGGQRIEVSTVQAKVRDVREAQQAAPQSAQLIKD--SGQLGRAKLYDLIVDRVVAK 90
Query: 102 FIEDIGLEADHGRVWG 117
+D G+ +
Sbjct: 91 AAQDAGVSVSRKEIQD 106
>gi|330503116|ref|YP_004379985.1| trigger factor [Pseudomonas mendocina NK-01]
gi|328917402|gb|AEB58233.1| trigger factor [Pseudomonas mendocina NK-01]
Length = 436
Score = 37.9 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 36/108 (33%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ +V G + + ++
Sbjct: 298 NPVEVPKALIGNEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 358 DLKPDETRVRELIEEMASAYQEPEQVVAWYYKNDQQMNEVRSVVLEEQ 405
>gi|28210315|ref|NP_781259.1| exonuclease sbcC [Clostridium tetani E88]
gi|28202751|gb|AAO35196.1| exonuclease sbcC [Clostridium tetani E88]
Length = 1045
Score = 37.9 bits (85), Expect = 4.7, Method: Composition-based stats.
Identities = 59/514 (11%), Positives = 165/514 (32%), Gaps = 9/514 (1%)
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVG 170
++ + I + L + ++ + +E K+ + + + + + +
Sbjct: 217 NNEELSKIIDKENLNFKEIILGIEEIIENDEIQEQNLSKKIEEINGEEIKIQNEIVLLEE 276
Query: 171 GMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230
+ + K++ + + + + K K+NY + K
Sbjct: 277 VNKKIKEKEEYEKKYKELIFQKEEYENKKDKLYQGRKALEVTMLENNFKEKENYFQLKEK 336
Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290
+ V+ KK+E S +L+ E K +E+ + T+ + ++ +E +
Sbjct: 337 EYIEVEQRVNLYRKKVEESIKKLKEEESKEEERKETSNKLTILKSFQNKVRDYEEKKNRI 396
Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVI 350
++ K ++ +++ SL +K + + +K + +
Sbjct: 397 EQIKGELEKKQKEYSSLGSKIKNDRTKLNNLNKEFVELQKCEVEKEKILSKVE-EKEVIC 455
Query: 351 AHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKI 410
+ + + +KK ++ K +K E + E + +
Sbjct: 456 NDMRDFYKYYNSYLINIKKHGNLKINFDKIEKKYMETKLKYEIMEDNFKKGQAGILAKDL 515
Query: 411 VSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG---SYMWVQ 467
V + E+ E+ L ++ + D + + + L + + +
Sbjct: 516 KDGVKCPVCGSKHHPSPAEMIKGVPTEEKLNQIKYEFDEIKEQRDMILQNMSDLNGVITS 575
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
E I KLE+ L + +++ +S K ++ LE + + I ++
Sbjct: 576 SNEIISDYKLKLEKSLGKIIEEYWKKDILNFISIKGKEIALEVENLKEKLKQIEEDNKKK 635
Query: 528 LLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEK 587
+ N + +++ E + E F + + +
Sbjct: 636 INIKNSLIKLEEEIEENNILLE----KLNEEYKDSFAKVKSEESSILAIEKEIPEKFRSV 691
Query: 588 DKFISYLTQMMNKDL-LDSVIAYLKSQYSVTVHD 620
+ + + NK L L+ ++ + +Y V ++
Sbjct: 692 PELNKKIKNIENKLLELNQLLEKARKEYEVINNE 725
>gi|224369655|ref|YP_002603819.1| hypothetical protein HRM2_25610 [Desulfobacterium autotrophicum
HRM2]
gi|223692372|gb|ACN15655.1| hypothetical protein HRM2_25610 [Desulfobacterium autotrophicum
HRM2]
Length = 256
Score = 37.9 bits (85), Expect = 4.8, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 43/137 (31%), Gaps = 17/137 (12%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM----------- 66
+ +L + I S F V S + + + + +
Sbjct: 8 IGILVLVTAILAFSSTHFKVEVSKPAIVINDRVITQKELDGLLSESTSSNHTAGIIDSVI 67
Query: 67 -----ISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIAR 121
I + + +N E + V ++K +L+ +D+ + + E + + I
Sbjct: 68 TNELLIQEALAQGINKEESFRVSVEKFYEQSLI-KILIDRRFKSLEPEISNQTIDRMIDH 126
Query: 122 SPLFHGKDNKFSHDVFV 138
G+D +S +
Sbjct: 127 YTGLAGRDLVYSKISYD 143
>gi|182417449|ref|ZP_02948776.1| peptidil-prolyl cis-trans isomerase [Clostridium butyricum 5521]
gi|237665664|ref|ZP_04525652.1| peptidil-prolyl isomerase family protein [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182378618|gb|EDT76145.1| peptidil-prolyl cis-trans isomerase [Clostridium butyricum 5521]
gi|237658611|gb|EEP56163.1| peptidil-prolyl isomerase family protein [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 252
Score = 37.9 bits (85), Expect = 4.8, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
++ + + +++ N Q + + +KILD LVS +
Sbjct: 3 NNVLAIINGKEITEFDVENIISQYSEADQKSVNTD---------NGREKILDQLVSCELM 53
Query: 100 DQFIEDIGLEADHG 113
F +D LE
Sbjct: 54 YNFAQDEKLEETDE 67
>gi|23097538|ref|NP_691004.1| protein secretion protein [Oceanobacillus iheyensis HTE831]
gi|22775761|dbj|BAC12039.1| protein secretion (post-translocation molecular chaperone)
[Oceanobacillus iheyensis HTE831]
Length = 303
Score = 37.9 bits (85), Expect = 4.8, Method: Composition-based stats.
Identities = 19/272 (6%), Positives = 62/272 (22%), Gaps = 38/272 (13%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + V +V +++ + ++ + G L ++
Sbjct: 43 NRNEAVATVAGEEISYDEWMTGLRNMQGQKH---------------------LKQMIDKE 81
Query: 98 TLDQFIEDIGLEADHGRVWGE----------IARSPLFHGKDNKFSHDVFVSRLAREGIN 147
++ E G+E + E + ++ + +L +
Sbjct: 82 VVNTLAEQEGIEVSEKIIDREVSFLYTMQGILTEDDAVEEEERWREEIKYRYQLEQLLTK 141
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
E + + T + +L + + + R +
Sbjct: 142 NIEIPEEELRSYYDTYGNQYDFSSSVKLSHILVEDMETAEQVYQELEDGASFRLLAREYS 201
Query: 208 PSNAVLTQ-------WFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKN 260
+ + + + ++ L +
Sbjct: 202 IDDETRQNGGYMGSIYTSSQFLLDSYETQAANMENHTYSEPFQAENGVAIMYLHRKLPAI 261
Query: 261 KEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
K Y + ++ + EA Q ++
Sbjct: 262 KFTYDEVQPYVHSEVAMHEEGLTLEADQLWEE 293
>gi|302380403|ref|ZP_07268872.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3]
gi|303235180|ref|ZP_07321799.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4]
gi|302311807|gb|EFK93819.1| PPIC-type PPIASE domain protein [Finegoldia magna ACS-171-V-Col3]
gi|302493667|gb|EFL53454.1| PPIC-type PPIASE domain protein [Finegoldia magna BVS033A4]
Length = 250
Score = 37.9 bits (85), Expect = 4.9, Method: Composition-based stats.
Identities = 15/156 (9%), Positives = 51/156 (32%), Gaps = 6/156 (3%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++ + + + V+ + E A ++ + +G +F + K
Sbjct: 94 VRVSDDELKEYYESHKDNFKVQPTFTASHILVESEDLAKEIKEKIDNDG-DFAQLAKEYS 152
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + + + + + + P++ Y + + + G V+
Sbjct: 153 TCPSKEQGGDLGTFQQGQMVKEFENALIENEIGDI-VGPVKTQFGYHIINIKDKTEGKVK 211
Query: 586 EKDKFISYLTQMMNKDLLD-SVIAY---LKSQYSVT 617
++ + + Q + + + I L+ +Y +
Sbjct: 212 SFEEAKNEVKQTLLQLKQQQAYIDATDRLQKEYKIE 247
>gi|169824601|ref|YP_001692212.1| peptidil-prolyl cis-trans isomerase [Finegoldia magna ATCC 29328]
gi|167831406|dbj|BAG08322.1| peptidil-prolyl cis-trans isomerase [Finegoldia magna ATCC 29328]
Length = 250
Score = 37.9 bits (85), Expect = 4.9, Method: Composition-based stats.
Identities = 15/156 (9%), Positives = 51/156 (32%), Gaps = 6/156 (3%)
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
V++ + + + V+ + E A ++ + +G +F + K
Sbjct: 94 VRVSDDELKEYYENHKDNFKVQPTFTASHILVESEDLAKEIKEKIDNDG-DFAQLAKEYS 152
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + + + + + + P++ Y + + + G V+
Sbjct: 153 TCPSKEQGGDLGTFQQGQMVKEFENALIENEIGDI-VGPVKTQFGYHIINIKDKTEGKVK 211
Query: 586 EKDKFISYLTQMMNKDLLD-SVIAY---LKSQYSVT 617
++ + + Q + + + I L+ +Y +
Sbjct: 212 SFEEAKNEVKQTLLQLKQQQAYIDATDRLQKEYKIE 247
>gi|315924379|ref|ZP_07920601.1| peptidyl-prolyl cis-trans isomerase [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315622258|gb|EFV02217.1| peptidyl-prolyl cis-trans isomerase [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 266
Score = 37.9 bits (85), Expect = 5.0, Method: Composition-based stats.
Identities = 7/87 (8%), Positives = 25/87 (28%), Gaps = 9/87 (10%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
+ +V +++ S +Q + R+ +++L+ +++
Sbjct: 15 KDQVLATVEGKEITQSQLDLLIEQAPQDQQMQF---------RTHEGRRQLLNEMIAQEL 65
Query: 99 LDQFIEDIGLEADHGRVWGEIARSPLF 125
+ +E + F
Sbjct: 66 FYLKGKAEKIEETEEYQKEFAEMTEKF 92
>gi|298480667|ref|ZP_06998863.1| response regulator receiver domain-containing protein [Bacteroides
sp. D22]
gi|298273101|gb|EFI14666.1| response regulator receiver domain-containing protein [Bacteroides
sp. D22]
Length = 1347
Score = 37.9 bits (85), Expect = 5.0, Method: Composition-based stats.
Identities = 49/524 (9%), Positives = 140/524 (26%), Gaps = 41/524 (7%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFS--VSGSSTVVSV----GRQKV-PFSSFINSWKQ 62
+ VA I +++ + + ++ ++ + + + + ++ F + Q
Sbjct: 765 NSKVAIIIYILICMALVFGIITYSIMHHVQKKKNRIAKIKYVREKTRIETELQFFFNLAQ 824
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKI-------------LDNLVSGATLDQFIE-DIGL 108
E+ I +N E A L + I L NL + I ++ +
Sbjct: 825 EIRTPIMLINNPIN-EIASIENLPENIAQKISIIQNSSKKLSNLADEILDLKKINAEVNI 883
Query: 109 EADH-----GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTD 163
++ + F D F ++ + +A I+ I ++ +
Sbjct: 884 YPTPIIDLTSQIVNTFKANNSFLDVDIVFIDEIKKNVVANLNIDAWNKIMNHLLSNALRF 943
Query: 164 VVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEK---- 219
+ + + S D I + + +
Sbjct: 944 TNNLIEVRAKIYKNNIIITIHDNGIGISQDDIKNVFNAFWHYDKTNRVNVPGFGLGLTIS 1003
Query: 220 ----YKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQL 275
YK + ++ + +E E ++ +P + + Q
Sbjct: 1004 KLLLYKMDMTINIESEVNKFTTFTISIPIYEKSIANETILERIQDLNSLDTPSVANINQS 1063
Query: 276 VFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKK 335
+ + + + I S +E + +S+ + + +
Sbjct: 1064 EIDSYLRKHNRILIVDNDRDLQLYLADALSKEYKIYTASNGEEAMEILSIGEKPDIIICE 1123
Query: 336 GDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFL 395
+ + + +N+ + F + I +E E ++
Sbjct: 1124 VMIPKMNGINLCKRLKKDANLYNIPIIMFADNTDINTKSYCIQNGAEAFIEKPINVDYLK 1183
Query: 396 ALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHT 455
++ E + ++ + + + + ++ + K D D
Sbjct: 1184 IRIKNILEKRKLLQLFFSKHSFITLSEPSDNNVDDCFLKQFSDIVVQCISKHDLTVDDVA 1243
Query: 456 VALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEV 499
+ + + + I + K + K AE +
Sbjct: 1244 KEMCMSRSVLFKKVKEITEMTP------NNYIKAIRLQKAAELL 1281
>gi|238922966|ref|YP_002936479.1| hypothetical protein EUBREC_0555 [Eubacterium rectale ATCC 33656]
gi|238874638|gb|ACR74345.1| Hypothetical protein EUBREC_0555 [Eubacterium rectale ATCC 33656]
Length = 220
Score = 37.9 bits (85), Expect = 5.1, Method: Composition-based stats.
Identities = 14/176 (7%), Positives = 41/176 (23%), Gaps = 27/176 (15%)
Query: 2 LEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTV---------VSVGRQKVP 52
+ IRK T + + +I G+ + + V V+V +++
Sbjct: 1 MRKIRKHITTIILAVLA-------VIAGVYAYNYHDMKQNIVYNEHLEDVAVNVNGKELT 53
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGL-----------DKKILDNLVSGATLDQ 101
E + ++ + + + K + + +
Sbjct: 54 LRDMAFYVAYEEMNVEKQALVYDSDNPNKYWNIHTNGEFVRVAARKAAMSMAIHDEIFYE 113
Query: 102 FIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
+ + F + + ++ + E K
Sbjct: 114 MAKKESITLTDDEKAALKNSEKDFWYDLSDIDGAKKLGVEKKDIYSSMEKSAIARK 169
>gi|303249762|ref|ZP_07335966.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307245230|ref|ZP_07527321.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307251950|ref|ZP_07533851.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307254177|ref|ZP_07536022.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307258641|ref|ZP_07540376.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307260875|ref|ZP_07542561.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|302651329|gb|EFL81481.1| survival SurA-like protein [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306853874|gb|EFM86088.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306860642|gb|EFM92654.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306862877|gb|EFM94826.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306867298|gb|EFM99151.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306869442|gb|EFN01233.1| Survival protein SurA-like protein [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 316
Score = 37.9 bits (85), Expect = 5.2, Method: Composition-based stats.
Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 24/184 (13%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ AK LV L G+S ++ V V V S +
Sbjct: 2 KLISAKSLLVALVTA---IGISQTAIAI-EERVVALVDGVPVMESQVQRAL--------- 48
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
++A S K L+ ++ + + +++ G++ ++ +V I +G
Sbjct: 49 -------GKKANSEANHKAALEQIIDDLLVQKAVKEAGVKVNYAKVDQVIEDIAARNGIT 101
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
+ L +GI ++Y + ++ V + +G + A
Sbjct: 102 Y----GQLLDALDYQGITLEQYRQQIAQQMAMEQVRHISIGKSIQVDPKDVHAYAKELLE 157
Query: 190 RSVD 193
+
Sbjct: 158 KDKA 161
>gi|293345711|ref|XP_001077739.2| PREDICTED: centromere protein E [Rattus norvegicus]
Length = 2532
Score = 37.9 bits (85), Expect = 5.2, Method: Composition-based stats.
Identities = 53/572 (9%), Positives = 165/572 (28%), Gaps = 20/572 (3%)
Query: 59 SWKQELGMISQKIGFVVNSERARSVGL--DKKILDNLVSG-ATLDQFIEDIGLEADHGRV 115
K+ + +S + N + L K++ +L Q I + D +
Sbjct: 653 ELKERINELSDSCKQMENGIQMYQRQLEAKKQVQADLEKELQLAFQEISKLSALVDGKGL 712
Query: 116 WGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPS 175
+ + + +V ++ ++ + +
Sbjct: 713 LSNLELEKRITDLQKELNKEVEEKETLQKEVHLLSELKSLPSEVETLRRELHEKSEELCV 772
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ ++ L D + + L+Q + + + +
Sbjct: 773 ITTEREKLFSEMAHKDSRIQGLLEEIGNTKDDLAASQLSQRSSDEECQALKSLHVELKHR 832
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+V E+ ++++ L E E + QL Q+ A + + + +
Sbjct: 833 QEEVLEESERVKQEVGTLSKETESLALSLDTGSGLLFFQLSQKTQELAQKTAEGQEMLNQ 892
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
+L E+ + S + K + + +L + +K D +
Sbjct: 893 MEELREKLERRDSSLQSAEKEKNLLTEKLQQTLEEVRALTQEKNDLKQLQESLQTERDQL 952
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVS 412
S+I+ + ++ ++ + + + E + + E ++ + V
Sbjct: 953 RSDIQDTVNMNIDTQEQLLNALESLKQHQETINMLKMKATEEMSDHLPIKGREGSSDEVE 1012
Query: 413 IDLPLVDFAGKDVKGKE-------VAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMW 465
L +D + +++ + + ++ L + + + +
Sbjct: 1013 QKLDGIDEENLLAESAHTVVGSGEDHGETEEQRKIDSLLQENSRLQQTLESIIAEKEQLK 1072
Query: 466 VQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLG 525
+ +KE+I EE+ + + + A + A + E S+ + +I + L
Sbjct: 1073 MDLKENIEMSVENQEELRILRDELKRQQEIAAQEKDHATEKSEELSRAHERLAEIEEKLK 1132
Query: 526 ASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQ 585
+ + + + ++ ++N + + ++
Sbjct: 1133 EKNQKLQETQQQLVSIQ-------EAMSEMQAKVTDVENLQNEFRNQALALERVETERLE 1185
Query: 586 EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVT 617
K +M + + + L+ + +
Sbjct: 1186 LAQKLHENYEKMESITKERNYLKELQESFEIE 1217
>gi|229028936|ref|ZP_04185035.1| Foldase protein prsA 2 [Bacillus cereus AH1271]
gi|228732216|gb|EEL83099.1| Foldase protein prsA 2 [Bacillus cereus AH1271]
Length = 285
Score = 37.9 bits (85), Expect = 5.2, Method: Composition-based stats.
Identities = 25/246 (10%), Positives = 83/246 (33%), Gaps = 20/246 (8%)
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
+ K+L++ + +++ + D + K K+ + L
Sbjct: 42 DFEKQLKDRYGKDMLYEMMAQDVITKKYKVSDDDVDREVQKAKKQYGDQFTAVLENNRLK 101
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
+ L + + E ++V K + K ++A +
Sbjct: 102 DEADFKNQIKFKLAMNEAIKKSVTE---------KDVKDHYKPEIKASHILVSDENEAKE 152
Query: 506 LVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFP 564
+ + G +F ++ K LL+ ++ + + + + + ++ + P
Sbjct: 153 IKKKLD-AGASFEELAKQESQDLLSKDKGGDLGYFHSGTMTPEFETAAYKLNIDQI-SEP 210
Query: 565 IENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDS------VIAYLKSQYSVTV 618
+++ Y + K+T K +Q D+ + + + + + ++ + ++ +
Sbjct: 211 VKSPNGYHIIKLTGKK--DLQPYDEVKGSIRKNLEAERIADPTFSHKLLQKELKKANIKI 268
Query: 619 HDNLIQ 624
D+ ++
Sbjct: 269 KDSDLE 274
>gi|86136812|ref|ZP_01055390.1| PPIC-type PPIASE domain protein [Roseobacter sp. MED193]
gi|85826136|gb|EAQ46333.1| PPIC-type PPIASE domain protein [Roseobacter sp. MED193]
Length = 283
Score = 37.9 bits (85), Expect = 5.5, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 10/64 (15%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGAT 98
++ + +V +++ I + Q L ILD LV
Sbjct: 29 ANTVIATVNGEEITLGHMIMARDSLPDQYKQ----------LPDDVLYNAILDQLVQQTA 78
Query: 99 LDQF 102
L Q
Sbjct: 79 LKQE 82
>gi|330817346|ref|YP_004361051.1| Putative PpiC-type peptidyl-prolyl cis-trans isomerase
[Burkholderia gladioli BSR3]
gi|327369739|gb|AEA61095.1| Putative PpiC-type peptidyl-prolyl cis-trans isomerase
[Burkholderia gladioli BSR3]
Length = 325
Score = 37.9 bits (85), Expect = 5.6, Method: Composition-based stats.
Identities = 7/83 (8%), Positives = 21/83 (25%), Gaps = 15/83 (18%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ + V + F + + E + + L++ L
Sbjct: 79 NAIARVNDVLITRDQFEQA--------RRVANTPDTPEA------RAALKNQLIAREVLR 124
Query: 101 QFIEDIGLEADHGRVWGEIARSP 123
Q + +V + ++
Sbjct: 125 QAAVKAHYD-TQAQVLAVVEQAK 146
>gi|325522151|gb|EGD00807.1| putative peptidylprolyl isomerase [Burkholderia sp. TJI49]
Length = 280
Score = 37.9 bits (85), Expect = 5.6, Method: Composition-based stats.
Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 15/78 (19%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
V + S + + S +A + L + L++ L+Q
Sbjct: 41 AVVNDTPIARSDVDSMIE--------------ASGQAVTPALRAQAKRELIARQLLEQTA 86
Query: 104 EDIGLEADHGRVWGEIAR 121
E V + R
Sbjct: 87 EKADYG-SRPEVNRVVTR 103
>gi|293400822|ref|ZP_06644967.1| putative foldase protein PrsA [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305848|gb|EFE47092.1| putative foldase protein PrsA [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 333
Score = 37.9 bits (85), Expect = 5.6, Method: Composition-based stats.
Identities = 29/335 (8%), Positives = 105/335 (31%), Gaps = 31/335 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDA------LFSVSGSSTVVSVGRQKVPFS 54
M++ ++K W + + ++F+ F ++ + D S +G + ++ + +
Sbjct: 1 MIDTLKKQ---WFV-VLIALIFIGFTVFIIYDTNKGKLPGKSENGKDVIATINGKSISAD 56
Query: 55 SFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGR 114
+S G + R ++ +D+ + IE +
Sbjct: 57 DLYDSM------YKSNGGNTLLYLRFQAAVIDESVKST--------DEIEK-----TADQ 97
Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174
+ + + + S + ++ + +++ +D++ + ++ +
Sbjct: 98 LKEYLNSNAQNQASSSGQSAEEYLKTELAKYGFQEDELDYFCNVQAKMSKMQKDYIDKHM 157
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
L ++ + R+V +I++ + + + + K A K+
Sbjct: 158 EELFTPLYEK--NKGRTVSHILVKMKDANNPTEEEMKTVKAIEKDLKTMSFAEVAKKYKD 215
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGK 294
++ D + K++ + V V + + +
Sbjct: 216 KGDTSSAEKGGFLGYMDSTTGFVDSFKKQALKMKKGEVSNWVKESNDNYNGWHMIKVEET 275
Query: 295 KFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI 329
+ +++ S S + + +++++
Sbjct: 276 DKDAILKDKKAKDSIYSAIENANSDLASKYISEAM 310
>gi|237725280|ref|ZP_04555761.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D4]
gi|265754206|ref|ZP_06089395.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
gi|229436546|gb|EEO46623.1| peptidyl-prolyl cis-trans isomerase [Bacteroides dorei 5_1_36/D4]
gi|263234915|gb|EEZ20470.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_33FAA]
Length = 456
Score = 37.9 bits (85), Expect = 5.6, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 74/289 (25%), Gaps = 25/289 (8%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ F + ++ K ++ E K+ + EI+
Sbjct: 160 RYFKDLPQDSIPFIPTQVEVQIITMEPKIPQEEIERVKKTLRDYTERVTSGEIAFSTLAR 219
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + + + F DP V G ++ I++
Sbjct: 220 LYSEDEGSRR-RGGELGFMGRAELVPEYANVAFNLQDPNKVSKIVESEFGFHIIQLIEKR 278
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ + + V K E + + + + E F D + T
Sbjct: 279 GDRINTRHILLKPKV-----DEKDLEAALLRLDSIANDIRNEKFTFDDAATYISHDKDTR 333
Query: 532 NQINRMDNENKF-----------FGYDGISQVFSGPVEMVKC----FPIENGLSYVVFKV 576
N M N + V V + + + K+
Sbjct: 334 NNHGLMANPQTGTARFEMQQLAQVSQEAAKMVEGMNVGEISTPFTMINAKGKEICAIVKL 393
Query: 577 TNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K ++ + + + +++ LD I + V +++
Sbjct: 394 KTRLNGHKATITEDYQRLKGIVMEKRSEEKLDKWIKDKQKHTYVRINEK 442
>gi|228984125|ref|ZP_04144311.1| Magnesium transporter [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|228775653|gb|EEM24033.1| Magnesium transporter [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 1052
Score = 37.9 bits (85), Expect = 5.7, Method: Composition-based stats.
Identities = 29/424 (6%), Positives = 112/424 (26%), Gaps = 10/424 (2%)
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFV 169
+ I + KF + + N + Y + + + ++
Sbjct: 551 SDEHIQKVIHKIFRPDNAYTKFDFQNGRPQKSAILTTNSIDMAKRYYQAIKKMTKDPNWL 610
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
+ + + + + + + + + A
Sbjct: 611 MKEFAEHPIRKGRTIEDIDFPRIAITYSIQENEDGSKQIQDEMKEIIKDYNDYYHTAWSI 670
Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
+ I D++ + + + E + + +
Sbjct: 671 EDIERYNGDINNRLARKKAEFKEFGKQIDLVIVVDRLLTGFDAPTIQTLFVDRNLSYANL 730
Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
++ + + + ++ K + ++ ++ + ++ + + +++ ++
Sbjct: 731 IQAFSRTNRT----YPGKKKGLIVTYRKPSTMEHNVKEATKTYSEAQEESNLVYPTYDES 786
Query: 350 IAHVSNIKPSFTVSFQEVKK--DIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
TV + + + + +E E + D++ +
Sbjct: 787 KKRFKKAHKELTVLVSSPDDINEHSPLEIRVEFVKAFQELNNAYEALVTYDDYNDDMEKS 846
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + L ++ G K + L F + ++ S +
Sbjct: 847 KALQEQVNTLEEYIGVYNTVKGSLVDEEGKDGLGPDFSNIEFYGENAINIYDIDSTYIDR 906
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ + A ++ +++K + +K +E V ++ + + + S
Sbjct: 907 LLGTYSANNQST---RDEIEKALQKLKKSEVVKEIYRDILSAIDNKEIDSNKDIFEVKRS 963
Query: 528 LLTT 531
TT
Sbjct: 964 FFTT 967
>gi|255322964|ref|ZP_05364100.1| ferric receptor CfrA [Campylobacter showae RM3277]
gi|255299826|gb|EET79107.1| ferric receptor CfrA [Campylobacter showae RM3277]
Length = 278
Score = 37.9 bits (85), Expect = 5.7, Method: Composition-based stats.
Identities = 23/292 (7%), Positives = 72/292 (24%), Gaps = 28/292 (9%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
KI F+ F + S + V + + + + + Q
Sbjct: 4 KISFAAFFLSFCMA-----NASQISNGIAVIIENEPITVNEVRKAAAQLQTS-------- 50
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSH 134
+ L+ L+ I+++ +EA + + + ++ S
Sbjct: 51 -----------EANALNLLIRDRLETAQIKNLKIEASDYELNQRLQKIAS----ESGMSA 95
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
S + +G + ++ D K + + + + + F +
Sbjct: 96 SDLRSAVLSKGGDYAQFKDDVAKTIKQEKLYQSIFAEAKINISENAARAYFEQNRDLFAH 155
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ 254
+ + N+ + + + D
Sbjct: 156 FTDVSVTRYVAPSMQLLEAARHSSPMNTNHSVHMDVLDLKSEQIPPQLRTIFQQTADGTF 215
Query: 255 AEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS 306
+ + + + + + + P E + + + ++ E
Sbjct: 216 TQIFQTPQGFEMFYVASKKGQTMPEFDEVRDEAMNALYKLEQDRVIGEYFNK 267
>gi|17229105|ref|NP_485653.1| hypothetical protein alr1613 [Nostoc sp. PCC 7120]
gi|17135433|dbj|BAB77979.1| alr1613 [Nostoc sp. PCC 7120]
Length = 252
Score = 37.9 bits (85), Expect = 5.7, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 500 SSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEM 559
A +L L+ ++ G +F + K L M ++ D +
Sbjct: 138 RELAEELQLQIAEGG-SFEQLAKEYSI-LDDRLVNGMMGPISRGTMPDKLRAAIDVATPG 195
Query: 560 VKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTV 618
PIE Y +F+V + + L Q + +L + +A + +V +
Sbjct: 196 QLVGPIEIDGRYGLFRVEQFLPASLDDI-----QLKQALQNELFEKWLAEKIQKLTVKL 249
>gi|325294667|ref|YP_004281181.1| hypothetical protein Dester_0468 [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065115|gb|ADY73122.1| hypothetical protein Dester_0468 [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 426
Score = 37.9 bits (85), Expect = 5.8, Method: Composition-based stats.
Identities = 41/381 (10%), Positives = 115/381 (30%), Gaps = 51/381 (13%)
Query: 38 SGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGA 97
+ + + V + + + I I V + + +L ++
Sbjct: 35 TSETPLAKVDGKTITVA--------YYKGIEDTIPEWVINRYYSGEEGKENLLKKIIDRQ 86
Query: 98 TLDQFIEDIGL------------------------------EADHGRVWGEIARSPLFHG 127
+ +D G+ + V I + +
Sbjct: 87 LILLSAQDEGIFEKPNVKKRIESFKIRQLAYRYLNSQVGEVKVSDEEVKKAIEK----YY 142
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
K K + ++ + + + + + +P++++ +
Sbjct: 143 KGKKVTPELEKAVRINLEAQKFQSKRNEILKNIENKIEFKEKKSYKPNDVVATYNGITIY 202
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY------ILFDVHE 241
I N + VL++ +K + + + + +
Sbjct: 203 YKDIEPIIPKNMPKERLKEAVTYYVLSKLAQKEGIDKKTDFQLTYNRLLEDLAVKDFEKK 262
Query: 242 KEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAE 301
K+++++ E++ YEK+K + +PE +E F ++ +A +A ++KGK ++
Sbjct: 263 ILSKVKVTDKEIKEYYEKHKSELKTPERADIEVFEFSDENKAKKALLDIEKGKSPKEVIP 322
Query: 302 EQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFT 361
+ S D + ++ K + ++ ++ V P+ T
Sbjct: 323 KNVYSTGKEWK---VTSADIDRNPVSALVFKEKNKNVNVLVMPDGRALLIVVKKRYPAGT 379
Query: 362 VSFQEVKKDIANQMRITKASE 382
+ + + I + KA +
Sbjct: 380 LPYGDAYSQIKRMLTSEKARK 400
>gi|71065023|ref|YP_263750.1| hypothetical protein Psyc_0453 [Psychrobacter arcticus 273-4]
gi|71038008|gb|AAZ18316.1| hypothetical protein Psyc_0453 [Psychrobacter arcticus 273-4]
Length = 176
Score = 37.9 bits (85), Expect = 5.9, Method: Composition-based stats.
Identities = 8/74 (10%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 7 KASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGM 66
+ + + L+ + +P ++W + + + S V V ++V S + ++ +
Sbjct: 28 NKQTSIITWLALIFIGIP-VLWSVFSGAANDTPSEPVAEV--EEVSLSETLETFDLDQDN 84
Query: 67 ISQKIGFVVNSERA 80
++ + +
Sbjct: 85 FDKRAWAAASYSQM 98
>gi|319654014|ref|ZP_08008107.1| hypothetical protein HMPREF1013_04726 [Bacillus sp. 2_A_57_CT2]
gi|317394336|gb|EFV75081.1| hypothetical protein HMPREF1013_04726 [Bacillus sp. 2_A_57_CT2]
Length = 290
Score = 37.9 bits (85), Expect = 5.9, Method: Composition-based stats.
Identities = 27/192 (14%), Positives = 62/192 (32%), Gaps = 6/192 (3%)
Query: 443 VFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSK 502
+ + K+ L + + + I D++L+E + K + K E
Sbjct: 97 LMQNNIKDEKELKEILKEQLLVEKAAIQDIKVTDKELKESYENYKPEIKARHILLEDEKT 156
Query: 503 ANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVK 561
A + +G+ F D+ K + + + + ++ V
Sbjct: 157 AKDIKNRL-NDGEKFEDLAKEFSKDPGSAEDGGDLGWFGSGKMVPEFEEAAYALEVNKF- 214
Query: 562 CFPIENGLSYVVFKVTNSKVGPVQEK--DKFISYLT-QMMNKDLLDSVIAYLKSQYSVTV 618
PI+ Y + +VT K E + L ++ ++ V+ V +
Sbjct: 215 SDPIKTQNGYHIIQVTEKKEKESFEYMRKELEYQLKVSKIDNSKIEEVMKKEFEDAKVKI 274
Query: 619 HDNLIQRYLDGE 630
+D ++ L+
Sbjct: 275 NDKELKGILETS 286
>gi|322514871|ref|ZP_08067889.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
25976]
gi|322119175|gb|EFX91320.1| peptidyl-prolyl cis-trans isomerase [Actinobacillus ureae ATCC
25976]
Length = 314
Score = 37.5 bits (84), Expect = 6.0, Method: Composition-based stats.
Identities = 21/175 (12%), Positives = 52/175 (29%), Gaps = 22/175 (12%)
Query: 20 VLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSER 79
+L G+S + + V +V V S G + +
Sbjct: 9 LLLTLVAAVGISQSAMAW-EERVVATVDGVPVMESDVQRLL-----------GKNATAAQ 56
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
K ++ + + + +++ G++ ++ V I + +G +
Sbjct: 57 ------HKSAVEQAIDDVLIQKAVKEAGVKVNYAHVDQAIEQIAARNGITY----GQLLD 106
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
L +GI +Y + ++ V + +G QA+ +
Sbjct: 107 ALDYQGITLNQYRQQIAQQMAMEQVRNISIGKSIQVQPQDVQARAQELLAQDKAI 161
>gi|293369502|ref|ZP_06616081.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|292635387|gb|EFF53900.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
Length = 515
Score = 37.5 bits (84), Expect = 6.0, Method: Composition-based stats.
Identities = 37/406 (9%), Positives = 94/406 (23%), Gaps = 18/406 (4%)
Query: 221 KDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQ 280
+ + I E+EK S + +Q +
Sbjct: 125 RVQVMQIFKRLPQTITSRHLEEEKTRMDSIYQAIQNQPDLNFNRLVEIYSDDKQSRWIEC 184
Query: 281 KEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTP 340
E F+++ ++ L +E + +
Sbjct: 185 LETTSEFENVAFSLAKGMASQPFFTPEGIHILKVMDREETAAYENVSARLMERLRRK--- 241
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTS 400
A + +K ++ + + + T+ + + S
Sbjct: 242 --EILDKGTGAVLERLKKAWQYAPNQAAMEELLAKGRTEQTLFTIDGQAYTGTMFTHFAS 299
Query: 401 MDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPD 460
+ + ++ + K+ IPY + + ++ + + +
Sbjct: 300 SHPQAVKRQLEGFIAKSLLDYESRNIDKKHPEIPYALRESDENYLVEEITRQKIDLPAAN 359
Query: 461 GSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDI 520
+ + R V KTA++ + V E K +
Sbjct: 360 DWAGLATYFKFHSSDYRWESPRYRGVVLHCVDKKTAKQAKKMLKK-VPEKEWADKLRQTF 418
Query: 521 GKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSK 580
+ + I VF +SY V K
Sbjct: 419 NTSGEEKIQVEQGI-----FADGDNKYIDKLVF--KKGDFDPL-----MSYPFTIVVGEK 466
Query: 581 VGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + + I + + L + L V ++ +++
Sbjct: 467 MKGPDDYREVIDRVRKDYRSYLDTCWMRELSESGKVEINQEVLKTV 512
>gi|294789088|ref|ZP_06754327.1| putative PPIC-type PPIASE domain protein [Simonsiella muelleri ATCC
29453]
gi|294482829|gb|EFG30517.1| putative PPIC-type PPIASE domain protein [Simonsiella muelleri ATCC
29453]
Length = 315
Score = 37.5 bits (84), Expect = 6.1, Method: Composition-based stats.
Identities = 18/169 (10%), Positives = 44/169 (26%), Gaps = 13/169 (7%)
Query: 41 STVVS-VGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + V + + + + S + L K L+ A L
Sbjct: 27 NGVATEVNASIITYGDIERTVRLLRS--------NPASASISNEELAKTAKQQLMERALL 78
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
++ GL+ + E+ R + + ++ + G + Y K L
Sbjct: 79 VYAAKEQGLKVTSAEIDAELNR----RATAAHTTVENLFNQTKKLGWSRDAYRLEVAKDL 134
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADP 208
++ + S+ + ++ V
Sbjct: 135 LVGRMIDRMNESVEVSDNDIQAYINQAQKDGQVVPSGNPYTVYNVRRIV 183
>gi|227485475|ref|ZP_03915791.1| possible LPXTG anchored adhesin [Anaerococcus lactolyticus ATCC
51172]
gi|227236605|gb|EEI86620.1| possible LPXTG anchored adhesin [Anaerococcus lactolyticus ATCC
51172]
Length = 2025
Score = 37.5 bits (84), Expect = 6.1, Method: Composition-based stats.
Identities = 19/200 (9%), Positives = 44/200 (22%), Gaps = 17/200 (8%)
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
G + + + + + P Y + K+ P +
Sbjct: 1073 NGSVTAPTPTRDGFTFKGWAADKNATEADANILNNITAPKTVYAVWEKKDKEPLQLNDPT 1132
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
V K + + + + A K G +T +
Sbjct: 1133 PVEVKDTKSLSSDEIDKVKKAVAE---ANKDKGITEADITVAEDGTVTVTKDGKTGTLAP 1189
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
K + F+ P E KV +E + +
Sbjct: 1190 EKTVKQKEVQNEFNPPKEP--------------VKVDKIGELKPEEIAEIKKAVKDANPD 1235
Query: 601 DLLDSVIAYLKSQYSVTVHD 620
+++ +V ++
Sbjct: 1236 RNFKDEDITVEADGTVKINQ 1255
>gi|110347568|ref|NP_055800.2| centrosomal protein of 152 kDa isoform 2 [Homo sapiens]
gi|218512101|sp|O94986|CE152_HUMAN RecName: Full=Centrosomal protein of 152 kDa; Short=Cep152
gi|109658816|gb|AAI17183.1| CEP152 protein [Homo sapiens]
Length = 1654
Score = 37.5 bits (84), Expect = 6.1, Method: Composition-based stats.
Identities = 49/544 (9%), Positives = 144/544 (26%), Gaps = 18/544 (3%)
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
A ++ L L +L + +G+ I + + K +
Sbjct: 464 ANMNKALQEELTELKDEISLYESAAKLGIHPSDSEGELNIELTESYVDLGIK--KVNWKK 521
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
+ E++ + +K + + +++ + + + + +
Sbjct: 522 SKVTSIVQEEDPNEELSKDEFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDL 581
Query: 200 RHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
V + N + + + + E ++ ++ E
Sbjct: 582 HQVKKDEKSIEVETKTDTSEKPKNQLWPESSTSDVVRDDILLLKNEIQVLQQQNQELKET 641
Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
E + Q+V + EA ++ + A + S ++ + K
Sbjct: 642 EGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKTQIRESLLAKHALEK 701
Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
+ + + + ++ + + + K Q
Sbjct: 702 QQLFEAYERTHLQLRSELDKLNKEVTAVQECYLEVCREK---DNLELTLRKTTEKEQQTQ 758
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
K EK+ + ++ + T + S V + K + I ++
Sbjct: 759 EKIKEKLIQQLEKEWQSKLDQTIKAMKKKTLDCGSQT-DQVTTSDVISKKEMAIMIEEQK 817
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
+ + ++ ++ + + + + ++ +
Sbjct: 818 CTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEIAVQNAHQRWLGELP-ELAEY 876
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ KA Q E E + I + + +N G + ++ S
Sbjct: 877 QALVKAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMRKNILPGKELEEKIHSLQK 936
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-LTQMMNKDLLDSVIAYLKSQYSV 616
E ++N VV + +K K+K Q N+ + ++
Sbjct: 937 E----LELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHRN---- 988
Query: 617 TVHD 620
+++
Sbjct: 989 KINE 992
>gi|315304396|ref|ZP_07874697.1| peptidylprolyl isomerase PrsA1 [Listeria ivanovii FSL F6-596]
gi|313627234|gb|EFR96066.1| peptidylprolyl isomerase PrsA1 [Listeria ivanovii FSL F6-596]
Length = 245
Score = 37.5 bits (84), Expect = 6.2, Method: Composition-based stats.
Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 6/216 (2%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
E ++ I + V + V + + L
Sbjct: 1 EFVQQLTFEKILGDKYKVTDEQVNSEFKKYKSQYGDQFDAVLAQSGLTEETFKSQLKYNL 60
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
+ + + D+ L+E + D +KA + V + K+G F D+ K
Sbjct: 61 LVQKATEANTDTSDKALKEYYKTWQPDITVSHILVADEAKAKE-VEQKLKDGAKFADLAK 119
Query: 523 NLGASLLTTNQINRMDNENKF-FGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
T + + ++ + P++ Y + ++
Sbjct: 120 EYSTDTATKDNGGELAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYGYHIIQMDKPAT 179
Query: 582 GP--VQEKDKFISYLTQMMNKDLLDSVIAYLKSQYS 615
++K Q ++ +++ LK +Y
Sbjct: 180 KTTYDKDKKAVKESYLQ--SQLTTENMQKTLKKEYK 213
>gi|239627468|ref|ZP_04670499.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517614|gb|EEQ57480.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 335
Score = 37.5 bits (84), Expect = 6.2, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 43/142 (30%), Gaps = 8/142 (5%)
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EV K + + + +A ++ + + +F +I + + +
Sbjct: 174 EVSDAEAKVIQVQQIVLDSRERAEDILSQVQQANADFANIASRSSRDVQINHTLEWSSQM 233
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
+ FS + +G Y+ + + + S L Q
Sbjct: 234 DTRE-----EVAFSLEQNEISDILELDGKYYI---LKCTNAYDEEATAARKSMLAQEKKT 285
Query: 601 DLLDSVIAYLKSQYSVTVHDNL 622
++ +++V + DNL
Sbjct: 286 RAFLAIYEPFVKEHTVKLKDNL 307
>gi|300776240|ref|ZP_07086098.1| signal peptide peptidase SppA [Chryseobacterium gleum ATCC 35910]
gi|300501750|gb|EFK32890.1| signal peptide peptidase SppA [Chryseobacterium gleum ATCC 35910]
Length = 585
Score = 37.5 bits (84), Expect = 6.2, Method: Composition-based stats.
Identities = 25/283 (8%), Positives = 67/283 (23%), Gaps = 22/283 (7%)
Query: 5 IRKASRTWVAKI--FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
+R + +A I +++ + F+ + + ++ +V +
Sbjct: 1 MRSFFKNVLANIVAIIILCALFFIFFIMMLVFSAMGNDKSVAVKKNSVLTI--------- 51
Query: 63 ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD-QFIED----IGLEADHGRVWG 117
+ I E G+ + L+ A + G+ + +
Sbjct: 52 ---NLKTNIIDSPTEEEMGLFGIGAQNKSILIYDAVEAINKAKTDDNIKGISIEADDLNA 108
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYI---DHYTKMLSRTDVVGMFVGGMRP 174
+ + F G+++ Y L ++ +
Sbjct: 109 GLTQIDDLRNAIEDFKKSGKFVYAYGNGVSQSAYYLGSVADKYYLHPAGMIELKGLSTEV 168
Query: 175 SNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISY 234
+ K + D S Q D ++ K +
Sbjct: 169 TFFKDFADKYGIGIEVIRHGKFKSAVEPFLRNDISPENKEQLSTLLNDLWKNTSNKMAAS 228
Query: 235 ILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVF 277
D + + + + + K + E L+
Sbjct: 229 RKIDTAQFRTITDSLYGMIPEQSLQYKLADKLMQKSEYENLIR 271
>gi|218133092|ref|ZP_03461896.1| hypothetical protein BACPEC_00954 [Bacteroides pectinophilus ATCC
43243]
gi|217991965|gb|EEC57969.1| hypothetical protein BACPEC_00954 [Bacteroides pectinophilus ATCC
43243]
Length = 345
Score = 37.5 bits (84), Expect = 6.2, Method: Composition-based stats.
Identities = 18/237 (7%), Positives = 56/237 (23%), Gaps = 10/237 (4%)
Query: 9 SRTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQ 62
++ + +I + + + G + G ++ G QK +
Sbjct: 20 TQKRLVRIIAALAVLALIFIYKGMFNGKGLYFTTGFGRHEILQAGSQKAYDYEASILFAD 79
Query: 63 ELGMISQKIGFVVNSERARSVGL----DKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
G V S +++ L+ A +++ + G+ +
Sbjct: 80 VRKQYESLFGSNVWSREIDGQSFETYARQQVRTKLIRVAYMNELADKRGVVLNREESTNI 139
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ + + S + ++ T + V +
Sbjct: 140 SKAAKEYLACVDDASAKRLGLTQEQIEQMFTKFAIASRLYNDMTANLQTEVSADYARVIT 199
Query: 179 LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ + L+ + + + E++ +Y
Sbjct: 200 IQYISADSENLINSAKARLDGGESFFYVARDINNGGDYECELRRGEMEKEFEEAAYN 256
>gi|170736613|ref|YP_001777873.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia MC0-3]
gi|169818801|gb|ACA93383.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
cenocepacia MC0-3]
Length = 278
Score = 37.5 bits (84), Expect = 6.3, Method: Composition-based stats.
Identities = 10/94 (10%), Positives = 27/94 (28%), Gaps = 20/94 (21%)
Query: 21 LFVPFL-IWGLSDALFSVSGS-----STVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+ + G++ + + +G+ V V + S
Sbjct: 10 AVIALVCATGMTSVVAAEAGTATLPKGVVAVVNNMPIAQSDVDAIVS------------- 56
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGL 108
S +A + L + +L+ ++Q +
Sbjct: 57 -ASGQADTPALRDAVKRDLIVRQLVEQAADKANY 89
>gi|330878771|gb|EGH12920.1| trigger factor [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
Length = 212
Score = 37.5 bits (84), Expect = 6.4, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 35/108 (32%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + ++ + +++ + G + + ++
Sbjct: 74 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVELGLIVAEVVKQF 133
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D RV I + + + + + + +
Sbjct: 134 DLKPDDARVREMIQEMASAYQEPEQVVAWYYKNEQQMNEVRSVVLEEQ 181
>gi|291546534|emb|CBL19642.1| hypothetical protein CK1_15290 [Ruminococcus sp. SR1/5]
Length = 419
Score = 37.5 bits (84), Expect = 6.4, Method: Composition-based stats.
Identities = 24/302 (7%), Positives = 76/302 (25%), Gaps = 12/302 (3%)
Query: 315 FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQ 374
+K+ IP ++ + + + ++ G ++ S + +
Sbjct: 39 VNKQEIPFGVVSLAARMQQAQAEAMYKMYLGGGSDMSIWSTKMDDDSDETYGENAVTTSV 98
Query: 375 MRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKG-KEVAAI 433
+ K + + + E E + + + + + D K +
Sbjct: 99 ETVEKMCLEKEHASEYDVEITDDEQKALEEAAKNFMAANSDETIAELAVDEDMVKTFLEL 158
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTV 493
+ + + D D +++ +++K + V
Sbjct: 159 ETYDVKMKDAIEAKADVKLDEKEYQQMSFSYASAKVSGDDLSDDDIKKNKENLQKFYDKV 218
Query: 494 KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553
K +++ G + + T + + + + + +
Sbjct: 219 K---------EDPAADFNTLGDKISEDMTATTGTCPTYEEGDDSAANGTTYPDEVRTALR 269
Query: 554 SGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQ 613
+ I+ + V ++ + E LT D + K +
Sbjct: 270 KLDEGALNEEIIKTDSVWYVVRLDSKNDKTATESK--KESLTNTKKDDFYNDTTDGWKKK 327
Query: 614 YS 615
Sbjct: 328 AD 329
>gi|289423524|ref|ZP_06425325.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
gi|289156026|gb|EFD04690.1| foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
Length = 252
Score = 37.5 bits (84), Expect = 6.4, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 25/78 (32%), Gaps = 9/78 (11%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ + +G +++ + + Q+ + K+IL +L++
Sbjct: 5 NYLAKIGDKEITAADVEAAISSIDPYQRQQF---------DNEEGRKRILADLINQELFY 55
Query: 101 QFIEDIGLEADHGRVWGE 118
+ L+ D V
Sbjct: 56 LDAIENKLDQDENFVKEM 73
>gi|226329059|ref|ZP_03804577.1| hypothetical protein PROPEN_02962 [Proteus penneri ATCC 35198]
gi|225202245|gb|EEG84599.1| hypothetical protein PROPEN_02962 [Proteus penneri ATCC 35198]
Length = 63
Score = 37.5 bits (84), Expect = 6.5, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 452 KDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQ 505
V L + S V+++ P+ + L++V V K K ++ ++++A +
Sbjct: 2 NSDMVTLGNDSAFIVRVEGYKPSASQPLDKVRDQVVMLVKQQKASQAMNAEAQK 55
>gi|145491608|ref|XP_001431803.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398909|emb|CAK64405.1| unnamed protein product [Paramecium tetraurelia]
Length = 769
Score = 37.5 bits (84), Expect = 6.5, Method: Composition-based stats.
Identities = 42/446 (9%), Positives = 103/446 (23%), Gaps = 25/446 (5%)
Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIGFVV-------NSERARSVGLDKKILDNLVSGA 97
+ +Q++ + K L + + N S + L++
Sbjct: 277 KINKQELMTQEYDEQVKNVLENKDTQFNLKLLYHFGKTNLNWLLSNIAHNQQNQELITEM 336
Query: 98 -------------TLDQFIEDI---GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRL 141
+LDQ E L + +I +
Sbjct: 337 RRFLRLYSQIDNFSLDQKDEKFTDEDLFVSLVYLDEKIENLQNSQNQKPHLIMSEEEQVC 396
Query: 142 AREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRH 201
K + + + E + N +
Sbjct: 397 RNLKQFLKNEYKRLNNLNKNQFKFNKIQDNDVQILKFDEGDFQKNSEVIKTETDERQNDN 456
Query: 202 VPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNK 261
V P+ + + + + I D + + L Y N+
Sbjct: 457 VQNDQQPNEIEQQNDQQHNQFEQQNEQQPSIQNRQQDNQNVLPNMWQQSYILIPIYSINE 516
Query: 262 EKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
+ + TV+ + + K+ + + L+ I LG
Sbjct: 517 QTNQQILLETVKSNFNSSSLQNYFEINKCICSKQIVCRLFKYKDDLNVICLGEIKGNDFE 576
Query: 322 DVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKAS 381
+ + + + + H NI+ S +I +Q++ K
Sbjct: 577 GEVMQLEVKQINQNNSIKTIFHYVNVKTTLEYWNIQNIEQKSSIFQYLEINSQLKFKKCK 636
Query: 382 EKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLF 441
+ + + + + E + S + K + + + +
Sbjct: 637 DYQGQILNGKKNGKGIEKNFIENMIYDG--SWKDGYITDGTKKLINTDQILQNAPYKWIG 694
Query: 442 RVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ T L +W++
Sbjct: 695 NFEKNELHGDNIKTYLLNYNKVVWLE 720
>gi|34540238|ref|NP_904717.1| PPIC-type peptidyl-prolyl cis-trans isomerase [Porphyromonas
gingivalis W83]
gi|34396550|gb|AAQ65616.1| peptidyl-prolyl cis-trans isomerase, PPIC-type [Porphyromonas
gingivalis W83]
Length = 460
Score = 37.5 bits (84), Expect = 6.6, Method: Composition-based stats.
Identities = 16/191 (8%), Positives = 43/191 (22%), Gaps = 11/191 (5%)
Query: 18 LVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNS 77
+ ++ + L W L V VG + + S + G +
Sbjct: 8 ICIIMLSLLYWALPSMGQKNVIDEVVWMVGDEPILRSDIEAT-----KRFLLSSGRPL-- 60
Query: 78 ERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVF 137
D I + + + +E + V + + + +
Sbjct: 61 ----EGNADCYIPEQIAVQKLFLNQAKIDSIEVNEADVNRYVDMYLADYIQQFGSKEKME 116
Query: 138 VSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVL 197
+ +E + ++ + + Q ++
Sbjct: 117 EYFNRKYTQIREEQRVEVRNSEIVRMMRKKIDENVKVTPSEIRQYFASLPQDSLPYIPTT 176
Query: 198 NNRHVPAIADP 208
+ AI
Sbjct: 177 VEVQLLAIKPV 187
>gi|186472670|ref|YP_001860012.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phymatum STM815]
gi|184195002|gb|ACC72966.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia
phymatum STM815]
Length = 250
Score = 37.5 bits (84), Expect = 6.7, Method: Composition-based stats.
Identities = 13/145 (8%), Positives = 38/145 (26%), Gaps = 23/145 (15%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ +V + + V FI + G + +++ +V
Sbjct: 2 TAIVRIDDEVVDVGEFIR--------------------LLKLTGQFESLIEQMVRDKLAV 41
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLS 160
+ G+ + + G + ++ L I+ ++ T L
Sbjct: 42 HAAKKHGVTVSADEIQERADQFRRVRGLHRAADMNQYLDTLK---ISLDDFEAFITDGLF 98
Query: 161 RTDVVGMFVGGMRPSNLLLDQAKRF 185
+ ++ + +F
Sbjct: 99 QEKMLDQVGSDSEIEEYFSMNSPKF 123
>gi|90424494|ref|YP_532864.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB18]
gi|90106508|gb|ABD88545.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Rhodopseudomonas
palustris BisB18]
Length = 310
Score = 37.5 bits (84), Expect = 6.8, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 36 SVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVS 95
S + +V + S + + IG + + R +L ++
Sbjct: 41 SAPADPVIATVNGAPIHESDLQLA--------DEMIGRNLPVQEKRER--RDALLTLVID 90
Query: 96 GATLDQFIEDIGLEADHGRVWGE 118
L Q +D + AD +
Sbjct: 91 SMVLAQVAKDRKI-ADEADLQRR 112
>gi|149926466|ref|ZP_01914727.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
MED105]
gi|149824829|gb|EDM84043.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Limnobacter sp.
MED105]
Length = 260
Score = 37.5 bits (84), Expect = 6.9, Method: Composition-based stats.
Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 4/215 (1%)
Query: 176 NLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYI 235
+ ++ + ++ + + AV + Y+ +
Sbjct: 40 DFIMAEQEKRGQAASPEMRATIRQELINQEVMKQEAVKKGLGSSPEVKYQVQMMNQAILA 99
Query: 236 LFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKK 295
+ K ++++ E++ Y + + E ++ + EA L KG K
Sbjct: 100 NALREDFYKNTKLTDKEVETAYAEIAKMMGGSEF-RASHILVEQEAEAKAIIDQLGKGGK 158
Query: 296 FIQLAEEQGKSLSDISLGSFSKEYIPD---VSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
F +A+ + K G P+ + ++ L K + FGY +
Sbjct: 159 FADIAKAKSKDPGSAPNGGDLDWANPNSFVPEFSQAMVGLKKGEYTKTPVKSQFGYHVIL 218
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
+++ + + +E++ + +M K E +
Sbjct: 219 LADTRQATPPKLEEIRPQLEQKMINDKWEEYQGKL 253
>gi|146184030|ref|XP_001027639.2| Peptidase family M1 containing protein [Tetrahymena thermophila]
gi|146143374|gb|EAS07397.2| Peptidase family M1 containing protein [Tetrahymena thermophila
SB210]
Length = 921
Score = 37.5 bits (84), Expect = 6.9, Method: Composition-based stats.
Identities = 29/441 (6%), Positives = 103/441 (23%), Gaps = 24/441 (5%)
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF------SH 134
+ +L++L+ L+Q + + L + ++ + F H
Sbjct: 469 KKFAFKNAVLNDLIIH--LEQEFKKLHLGFTINEWQRQWIQTAGLNECQPIFNPQDRSDH 526
Query: 135 DVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDY 194
+ H ++ + + ++ +
Sbjct: 527 AKLKIIQKSTLTQHQTLRRHKIQVAFFDQNANITTYPILINDYQETILTYDASKTEYKAV 586
Query: 195 IVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE-- 252
++ + + + + I + +D+ K E
Sbjct: 587 LLNYADQGYIKINFDDVSFNFFKKNVCKINDILTRTLIWGVFYDLVRDGKISSEEFVEIF 646
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDIS- 311
++ + E + ++ + QL E + + + K +
Sbjct: 647 IENIPNEQSEDIITNQVENITQLYSQYTPEKYKLALGERIFNFLLMYLLSIPKDNKNRII 706
Query: 312 -----LGSFSKEYIPDVS---LADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVS 363
L SF++ + + K + + + +
Sbjct: 707 CVRDSLDSFARSEVHIIKLVNWLKKEDQDLKHIEIGLALSWRIVALAHKCKKYTREEKNA 766
Query: 364 FQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGK 423
+ +K+ K +E L S + + ++ F
Sbjct: 767 LFQKQKERDPSDTSQYNQHLCKALDLSPDERETLWKFYISSSNKLSVKNLTYSWSGFNST 826
Query: 424 DVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVA-----LPDGSYMWVQIKESIPARDRK 478
+ + ++ + + D + +++ + D
Sbjct: 827 FNRTDLMPYFDKFFGVIKTIIDTKSQEFASEFFSYLLPVTEDFQRLIQNLEQLLSNLDED 886
Query: 479 LEEVLTDVKKDWKTVKTAEEV 499
+++ ++ ++
Sbjct: 887 HSYFKVLIEEQLDDIQRQQKA 907
>gi|212640109|ref|YP_002316629.1| Parvulin-like peptidyl-prolyl isomerase (molecular chaperone)
[Anoxybacillus flavithermus WK1]
gi|212561589|gb|ACJ34644.1| Parvulin-like peptidyl-prolyl isomerase (molecular chaperone)
[Anoxybacillus flavithermus WK1]
Length = 288
Score = 37.5 bits (84), Expect = 6.9, Method: Composition-based stats.
Identities = 23/162 (14%), Positives = 56/162 (34%), Gaps = 6/162 (3%)
Query: 470 ESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLL 529
E I D +L++ + K K + A + + K G++F + K
Sbjct: 126 EDIKVTDEELKKYYNEYKPKVKASHILVDDEKTAKDIKAKLEK-GEDFAKLAKEYSKDTG 184
Query: 530 TTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGP--VQE 586
+ + + ++ V + P++ Y + KVT+ + +
Sbjct: 185 SAQNGGDLGWFGPGKMVEEFEKAAYALNVGEI-SDPVKTQFGYHIIKVTDKEKKKSFDEM 243
Query: 587 KDKFISYLTQMMNK-DLLDSVIAYLKSQYSVTVHDNLIQRYL 627
K++ + + + S + L + +V + D ++ L
Sbjct: 244 KEEIEFEVKKSKLDTSKVQSKLDELMKEANVDIKDKSLKDAL 285
>gi|114656899|ref|XP_523070.2| PREDICTED: centrosomal protein of 152 kDa isoform 2 [Pan
troglodytes]
Length = 1710
Score = 37.5 bits (84), Expect = 7.0, Method: Composition-based stats.
Identities = 44/544 (8%), Positives = 146/544 (26%), Gaps = 18/544 (3%)
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
A ++ L L +L + +G+ I + + K +
Sbjct: 464 ANMNKALQEELTELKDEISLYESAAKLGIHPSDSEGELNIELTESYVDLGIK--KVNWKK 521
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
+ E++ + +K + + +++ + + + + +
Sbjct: 522 SKVTSSVQEEDPNEELSKDEFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDL 581
Query: 200 RHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
V + N + + + + E ++ ++ E
Sbjct: 582 HQVKKDEKSIEVETKTDTSEKPKNQLWPESSTSDVVRDDILLLKNEIQVLQQQNQELKET 641
Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
E + Q+V + EA ++ + A + S ++ + K
Sbjct: 642 EGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKTQIRESLLAKHALEK 701
Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
+ + + + ++ + + + K Q
Sbjct: 702 QQLFEAYERTHLQLRSELDKLNKEMTAVQECYLEVCREK---DNLELTLRKTTEKEQQTQ 758
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
K EK+ + ++ + T + + ++ V + K + I ++
Sbjct: 759 EKIKEKLIQQLEKEWQSKLDQT-IKAMKKKTSDCGSQTDQVTTSDVISKKEMAIMIEEQK 817
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
+ + ++ ++ + + + + ++ +
Sbjct: 818 CTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEIAVQNARQRWLGELP-ELAEY 876
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ +A Q + E + + + + +N G + ++ S
Sbjct: 877 QALVRAEQKKWKEQHEVSVNKRVSFAVSEAKEKWKSELENMRKNILPGKELEEKIHSLQ- 935
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-LTQMMNKDLLDSVIAYLKSQYSV 616
+ ++N VV + +K K+K Q N+ + ++
Sbjct: 936 ---RELELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHRN---- 988
Query: 617 TVHD 620
+++
Sbjct: 989 KINE 992
>gi|307726909|ref|YP_003910122.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1003]
gi|307587434|gb|ADN60831.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Burkholderia sp.
CCGE1003]
Length = 250
Score = 37.5 bits (84), Expect = 7.1, Method: Composition-based stats.
Identities = 9/111 (8%), Positives = 29/111 (26%), Gaps = 20/111 (18%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ +V + + V + FI + G + +++ +V
Sbjct: 2 TAIVRIDDEVVDVAEFIR--------------------LLKLTGQFESLIEQIVRDKLTV 41
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEY 151
+ G+ + + G + ++ L + +
Sbjct: 42 HAAKKQGIVVTADEIQERADQFRRVRGLHRATDMNQYLDVLNVSLDEFEAF 92
>gi|218779881|ref|YP_002431199.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
alkenivorans AK-01]
gi|218761265|gb|ACL03731.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Desulfatibacillum
alkenivorans AK-01]
Length = 327
Score = 37.5 bits (84), Expect = 7.1, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 7/85 (8%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+ V + + G S L K+IL N++ L
Sbjct: 32 GEVLARVNGVNIYGWQITLAENLL-------FGSRNPHVHTESQTLKKEILKNVIDMEVL 84
Query: 100 DQFIEDIGLEADHGRVWGEIARSPL 124
Q + G+E D V G +
Sbjct: 85 FQDAQKRGIEPDKRLVDGFVWNYKA 109
>gi|195398931|ref|XP_002058074.1| GJ15883 [Drosophila virilis]
gi|194150498|gb|EDW66182.1| GJ15883 [Drosophila virilis]
Length = 2703
Score = 37.5 bits (84), Expect = 7.1, Method: Composition-based stats.
Identities = 51/584 (8%), Positives = 138/584 (23%), Gaps = 20/584 (3%)
Query: 53 FSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADH 112
++ + Q+ E+ + ++ L L L+Q ++ + ++ +
Sbjct: 1552 TRELTQQLERAQEQLQQR------DEQLAQLNME---LSELERERLLEQQVQQLRMQ-SN 1601
Query: 113 GRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGM 172
+ + + + R E + ++
Sbjct: 1602 QELRALQQQIAELGTHNQTDDQVHIETETNRLVEKLAELNEQTEQLTRHQASPAPVPAAA 1661
Query: 173 RPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
+ L + + + P+
Sbjct: 1662 VADDWLAWSQPDSVPVPAPGPGPMAHTEQNVPLPAPAMFFGGDAAAAPSPFDEIVAQPVR 1721
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKK 292
+ + E S ++LQ + ++ E + + + E
Sbjct: 1722 MSTQNVGVAQHESSEASIEQLQRKVCDLEKHAKELESQLLAHNQALAEHEERRVQLERAL 1781
Query: 293 GKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAH 352
++ +LA+ + L + + P A + G T +
Sbjct: 1782 AEREQELAQLHTAAEERERLAAIEQLIQPTADAAVAPTLDMFFGGETVPDAAVASFQQEL 1841
Query: 353 VSNIKPSFTVSFQEVKKDIANQMRITKASEKVKE----------DYKRLEEFLALGTSMD 402
KK Q + ++ E +
Sbjct: 1842 GLPQSEPVVEPLITPKKAYLCQPEQEEPDQQPASDWAVDVDEDPWANAGAEQQLTDATAA 1901
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGS 462
+R E++ + L K +K + +++ + D + + L
Sbjct: 1902 LHARIEQLEAQKAKLQTKTAKLMKCVKEYRSKEQQEQARKDNNNDLDGAIIDELKLQLQL 1961
Query: 463 YMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGK 522
Q K + + LE+ + D T K Q + + K
Sbjct: 1962 QETRQAKTEELLQQQTLEKEKLTKRIDVLTAGNERMAELKERQDREVQMYQTRIRELQQK 2021
Query: 523 NLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVG 582
+ + + + + + ++ ++ K
Sbjct: 2022 LQQLESWDEVAATPTAPASGEDAAAAAAARATIENLQAENQELNSECQELLAQLQQEKQR 2081
Query: 583 PVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+E+++ + L + A L+ Q + V Q+
Sbjct: 2082 AQREREQLQAQLEAHDQQAEQVKQQAELEKQLAEQVKQQAEQQV 2125
>gi|224824918|ref|ZP_03698024.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
2002]
gi|224602589|gb|EEG08766.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Lutiella nitroferrum
2002]
Length = 244
Score = 37.5 bits (84), Expect = 7.3, Method: Composition-based stats.
Identities = 11/96 (11%), Positives = 25/96 (26%), Gaps = 22/96 (22%)
Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
++V ++ + A + + L+ L Q
Sbjct: 2 AITVNGVEITEAMVQAELANH----------------ADAPSPRDAAIQQLILHELLLQK 45
Query: 103 IEDIGLEADHG------RVWGEIARSPLFHGKDNKF 132
+ GL+ + + E+A +P F
Sbjct: 46 AKASGLDTSNEGQAIGALLDKELAFTPADEATCLAF 81
>gi|150003020|ref|YP_001297764.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
8482]
gi|149931444|gb|ABR38142.1| peptidyl-prolyl cis-trans isomerase [Bacteroides vulgatus ATCC
8482]
Length = 446
Score = 37.5 bits (84), Expect = 7.3, Method: Composition-based stats.
Identities = 42/479 (8%), Positives = 125/479 (26%), Gaps = 73/479 (15%)
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ M G ++ + KR FE + + D
Sbjct: 18 LEMRAQGEVVLSIDGEPVKRSEFEYYFRKSSHRTPLSFLPSFINYKLKVRYAHDMGIDTL 77
Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLV-------- 276
+ Y + E + Y + +++ + + + +
Sbjct: 78 SVFRRQVDWYRGKLLRTYLADAEKEEQAARRLYLQGEQRLQANDWIKIAHISKYLSQNAS 137
Query: 277 ----FPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSL 332
+++ D +++L++G F LA + ++G + ++ + I L
Sbjct: 138 RQEEMRVRQQMDSVYEALREGADFATLARRYSDDEACKNVGGVLPWMPVNKNMQEWIDKL 197
Query: 333 A--KKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKR 390
++ + + G I + + + E+ +E
Sbjct: 198 ESLERNKISAPFYSPMGIHIVKWIDRRQGV-------------------SFEEKREQLLN 238
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
E T + + +++ + + + ++ LL +
Sbjct: 239 YLEKNGNCTWKELSAEQKEELEFRVQEL-----------------QDGLLAAYLSQKYQS 281
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQLV 507
+ + + V + ++ S+ ++
Sbjct: 282 GDEAWNEDDLERFFKQHKSDYAWELPHYRGAVIHCKDRKTASAIKKQLKKKPVSQWKDIL 341
Query: 508 LEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIEN 567
+ + + + + + T I+++ + F +
Sbjct: 342 HTLTGDDASSKVRMEAGVFQIGTNRYIDKLVFKCGSFQPEP------------------- 382
Query: 568 GLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
L Y K GP + + + D+ + LK +Y V ++ +++
Sbjct: 383 DLPYTFVMGKKLKKGPES-YEDVREAVVKDYLTVYEDAWLKDLKRKYKVEINQEVLKTV 440
>gi|327289131|ref|XP_003229278.1| PREDICTED: protein OS-9-like [Anolis carolinensis]
Length = 581
Score = 37.5 bits (84), Expect = 7.4, Method: Composition-based stats.
Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 11/159 (6%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTV-KTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGA 526
+E +++ + ++ +VK + +T E +A++ + + + D GK
Sbjct: 348 KEEVKSEMEKEFDHIINEVKDELETEGLKGEFDRKQASKSLASTLNKLIDKLDSGKAPNK 407
Query: 527 SLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQE 586
Q D E + DG S + + N V +VT K G ++
Sbjct: 408 GDKEQEQKPEEDEEEEETPLDGGD---SAKEDAARAASDGNADGRVKVRVTKVKPGSARQ 464
Query: 587 KDKFISYLTQMMNK-----DLLDSVI--AYLKSQYSVTV 618
K+ + +++ + ++ ++ LK++ + +
Sbjct: 465 KELRVQEMSRDNPQLRHIESVVKDLLEKEGLKAEGKIEI 503
>gi|49457774|ref|YP_031718.1| hypothetical protein pRH45II_p02 [Lactobacillus brevis]
gi|49257020|dbj|BAD24807.1| hypothetical protein [Lactobacillus brevis]
Length = 428
Score = 37.5 bits (84), Expect = 7.4, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQK 50
M ++IR R W+A + + + V F G+ +++ V V K
Sbjct: 1 MFDVIRSK-RYWLALLLVGAIIGIVSFAFIGIRNSV--KVKQIPVALVNEDK 49
>gi|298480173|ref|ZP_06998371.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D22]
gi|298273454|gb|EFI15017.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. D22]
Length = 515
Score = 37.5 bits (84), Expect = 7.5, Method: Composition-based stats.
Identities = 29/273 (10%), Positives = 75/273 (27%), Gaps = 23/273 (8%)
Query: 359 SFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLV 418
S+ + + + T+ + + + S S + ++ +
Sbjct: 258 SWQYTPNQAAMEELLTKGRTEQNLFMIDGQAYTGAMFTRFASSHPQSVKRQLEGFIAKSL 317
Query: 419 -DFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDG----SYMWVQIKESIP 473
D+ +++ K + K+ K A+ D +Y +
Sbjct: 318 LDYESRNIDKKHPEIRIALRESDENYLVKEITRQKIELPAINDRAGLATYFKFHSSDYRW 377
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
R V KTA++ ++ + + L + T+
Sbjct: 378 ESPRYRG-----VVLHCVDKKTAKQAKKMLKKVPEK---------EWADQLRQTFNTSGT 423
Query: 534 INRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY 593
++ E F + + P+ +SY V K+ + + I
Sbjct: 424 -EKIQVEQGIFADGDNKYIDKLVFKKGGFEPV---MSYPFTIVVGEKMKGPDDYREVIEQ 479
Query: 594 LTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
+ + L L+ V ++ +++
Sbjct: 480 VRKDYRSYLDTCWARELREFGKVEINQEVLKTV 512
>gi|289422879|ref|ZP_06424710.1| putative foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
gi|289156709|gb|EFD05343.1| putative foldase protein PrsA [Peptostreptococcus anaerobius 653-L]
Length = 325
Score = 37.5 bits (84), Expect = 7.5, Method: Composition-based stats.
Identities = 31/312 (9%), Positives = 80/312 (25%), Gaps = 15/312 (4%)
Query: 4 IIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQE 63
I+K T++ + L+++ + FL V S + V S ++ K
Sbjct: 2 SIKKNKFTFICALILILMPITFLAC---------KQDEIVASTDKFDVRLSEVNDNIKLA 52
Query: 64 LGMISQKIGFV-----VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
+ G V S + K ++D L+ D+ + G +
Sbjct: 53 KFEYNSIFGDDSWKSVVVSSDGSTEQFKKSVIDYLIMSHYKDEENKKNGYSYSEEELNDM 112
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ + +D S++ + + + + +
Sbjct: 113 LDSAKQNIEEDKIKSNEYKSLNIDDHVLKKYIRDKMIENKNQEEFNKRVKIKEEDIKKYY 172
Query: 179 LDQAKRFYFENRS-VDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
D+ F + + N + + + + + +
Sbjct: 173 KDKINEFKEKEFDCYQIWIKNPNDKIKAENAYKDLKKGMDFSTVVKKYSEDENSKNKGGY 232
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
K++ + E + + NQ+ + S + K
Sbjct: 233 IGKIKKENLIPELREKALIMRDKEYTGVVKSKDGYFIIKIDNQRNLTKTLDSCRTKIKDD 292
Query: 298 QLAEEQGKSLSD 309
L + ++
Sbjct: 293 LLEKLYQENNKK 304
>gi|216264902|ref|ZP_03436894.1| conserved hypothetical protein [Borrelia burgdorferi 156a]
gi|215981375|gb|EEC22182.1| conserved hypothetical protein [Borrelia burgdorferi 156a]
gi|312148333|gb|ADQ30992.1| conserved hypothetical protein [Borrelia burgdorferi JD1]
Length = 500
Score = 37.5 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 25/209 (11%), Positives = 52/209 (24%), Gaps = 16/209 (7%)
Query: 10 RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVGRQKVPF---SSFINSW 60
+ ++ + F G+ D S S Q + + S F
Sbjct: 20 KKVGMWGIFALILIVFGFIIAPLLPGIFDNAHSSGLK--FGSYKGQPIYYKKDSKFAKYV 77
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ S+ G N V ++ + +
Sbjct: 78 NYYSNLYSRLQGNAKNIN--TDYNAWYLAFMKYVEDVAFLDLVKKYNFYISKEMLNKNLL 135
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+SP + FS + + + D + + ++V + + L D
Sbjct: 136 KSPEYLDSSGNFSSKRYN---KASDYQKVKIYDDMVENILFSNVKIFLNSNLIFPDSLFD 192
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPS 209
K R + Y L+ + S
Sbjct: 193 MIKNMSTVERHISYFSLSYQDFSNKEVIS 221
>gi|86133091|ref|ZP_01051673.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
gi|85819954|gb|EAQ41101.1| peptidylprolyl isomerase [Polaribacter sp. MED152]
Length = 459
Score = 37.5 bits (84), Expect = 7.6, Method: Composition-based stats.
Identities = 56/504 (11%), Positives = 126/504 (25%), Gaps = 76/504 (15%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
RT + K + V F +S + V V + + S I +KQE+ +
Sbjct: 4 RTTILKFIKSAILVAF-FGLVSTYTSAQIKIDGVAVVIGKNIVLDSDIEKFKQEVEV--- 59
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
+ D ++L+ L+ L + + + RS F +
Sbjct: 60 -------RSEGKIKISDCEMLEELMQQKLLAHHAVIDSVTVSDEEISSRVERSVAFFTEQ 112
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
V N L D K Y
Sbjct: 113 FG---------------------------------SVDKVIKAYGFNDLDDLKKELYSVQ 139
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
I + D + + ++ K++ P
Sbjct: 140 SENVLIEKEQLKITDKIDVTPEEVRLYYVGLKEDGELP---------------------- 177
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSD 309
E AE E + + Q + E + + K + + ++
Sbjct: 178 --EFSAEIELAQLVIKAKPTEEENQRIINKLNELKKEIEDGANFKMKAIINSDDPGVTNN 235
Query: 310 ISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSN----IKPSFTVSFQ 365
+KE + + G + FGY + + ++ + + Q
Sbjct: 236 GGRYEVTKESQFIKEFKE-MAFSLDVGQVSKPFKSDFGYHLMQLHEIKGNMRIASHILMQ 294
Query: 366 EVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDV 425
+ KA + + F + + + +
Sbjct: 295 PNVPESLLTETKEKAIKIANDIKLGKITFTEAVRKYSDDEDTKNDDGLLMNPYTGENTWD 354
Query: 426 KGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTD 485
+ A+ + L + D ++ + Y ++ +++ L
Sbjct: 355 LTRMDPALYARVAELQKGELSDVYFDEN---RSGEKMYKFIIMRDRTNTHTADLVNDYVK 411
Query: 486 VKKDWKTVKTAEEVSSKANQLVLE 509
V++ K E ++ A + + +
Sbjct: 412 VQELALAKKKEEAITKWAKEKISD 435
>gi|295099529|emb|CBK88618.1| PPIC-type PPIASE domain. [Eubacterium cylindroides T2-87]
Length = 339
Score = 37.5 bits (84), Expect = 7.7, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 14/111 (12%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALF------SVSGSSTVVSVGRQKVPFS 54
M E +R W + + V+ + F+ + + DA ++ G V S+ V
Sbjct: 1 MGEFLRNN---WFV-VVIAVILISFIGYFIFDANRYNVSGKTMDGKEVVASIDGTDVTAD 56
Query: 55 SFINSWKQ----ELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQ 101
N + L + + E S+ D L++ +
Sbjct: 57 DLYNELESFDSTLLYNMYRNAVINQTIETTDSLREDASTLESTIRTNAQSN 107
>gi|294509086|ref|YP_003565975.1| hypothetical protein BMQ_pBM70172 [Bacillus megaterium QM B1551]
gi|294352390|gb|ADE72712.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
Length = 434
Score = 37.5 bits (84), Expect = 7.7, Method: Composition-based stats.
Identities = 33/445 (7%), Positives = 108/445 (24%), Gaps = 26/445 (5%)
Query: 26 LIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGL 85
++ G + + V V +++ + + ++
Sbjct: 15 IVLGFFSLKYFSTNYQVVAEVNGKEIHKKDVNKLLEDKYFDNAR---------------- 58
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145
DN + +D I + ++ L K + +
Sbjct: 59 -----DNYIDQQLIDLEKAKIN-PPTNKQLKESFRYYQLVDRKAT--DLESKKGEVGNFY 110
Query: 146 INEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAI 205
N + K V + L + + + +D + + + I
Sbjct: 111 YNNALIKKYTVKNKELNSYVEEQEETLGDKVYNLYKLEGDHTLINDIDKAIKQGKSIEDI 170
Query: 206 ADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYF 265
N + KDN + + + E ++ +++ +
Sbjct: 171 QKEKNISFKKDIVFSKDNIYDVDLSQYKKGDSIHIHSSMEDEHTSHDMEGMNMDEHTSHD 230
Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSL 325
+ E + E + + + + E + +++ + + +++
Sbjct: 231 MEGMNMDEH--TSHDMEGMNMDEHTSHDMEGMNMDEHTSHDMEGMNMDEHTSHDMEGMNM 288
Query: 326 ADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVK 385
+ + + + ++ E M + + +
Sbjct: 289 DEHTSHDMEGMNMDEHTSHDMEGMNMDEHTSHDMEGMNMDEHTSHDMEGMNMDEHASHDM 348
Query: 386 EDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFG 445
E E M +++ ++ + + K+ + KE
Sbjct: 349 EGMNMDEHTSHDMEGMKDMNAQDNDNNEENTETHTLLIISDIKDNYKLNLKENKQEITNN 408
Query: 446 KDDPLSKDHTVALPDGSYMWVQIKE 470
+ L + +I++
Sbjct: 409 YIANNYYKEQIDLNNYLRAKYEIRK 433
>gi|227524701|ref|ZP_03954750.1| peptidylprolyl isomerase [Lactobacillus hilgardii ATCC 8290]
gi|227088185|gb|EEI23497.1| peptidylprolyl isomerase [Lactobacillus hilgardii ATCC 8290]
Length = 293
Score = 37.5 bits (84), Expect = 7.8, Method: Composition-based stats.
Identities = 29/280 (10%), Positives = 64/280 (22%), Gaps = 42/280 (15%)
Query: 10 RTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQ 69
+ W+ I L + + F + +V + K+ S++ +S K
Sbjct: 2 KKWL--IVLAGVLMSFTLAACGS--------KSVATTNGGKITESAYYSSLKGTSSG--- 48
Query: 70 KIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKD 129
K++ ++ L+ + G + V + + +G
Sbjct: 49 -----------------KQVFQQMILNKVLE---KQYGKKVKDSAVNKDFNKYKKQYGSS 88
Query: 130 NKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFEN 189
F + L + G+ + D L V L Q K + +
Sbjct: 89 -------FNAVLQQNGMTASQLKDSIRSNLLLQQAVRD--NTKFTDAQLKAQFKSYQPKV 139
Query: 190 RSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEIS 249
+V + A + K + + I +
Sbjct: 140 TVNQILVSKKSTAETVIKQLKAGKSFSSLAKKYSTDTATKNKGGRISAFDNTNTSLDSNF 199
Query: 250 NDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
K + + N
Sbjct: 200 KKAAFKLKNGEYTKTPVKTQYGYQVIQMVNHPAKGTYKDH 239
>gi|315924902|ref|ZP_07921119.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621801|gb|EFV01765.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
23263]
Length = 509
Score = 37.1 bits (83), Expect = 7.8, Method: Composition-based stats.
Identities = 18/159 (11%), Positives = 51/159 (32%), Gaps = 1/159 (0%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
+V +V ++KV + + ++ G ++RA +++ + + + +
Sbjct: 190 DKSVGTVDKKKVTHGEYYYYYVGKVLSTYASTGSAPATDRATQKRINQSVFKTIGTYRGM 249
Query: 100 DQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKML 159
Q+ +D ++ V + + K S L G+ + + +
Sbjct: 250 IQYCKDHHIKISSDAVAAQ-QKLLNMTLKMYFPKDSTLDSYLQNYGMTAAIFRKYQKEEA 308
Query: 160 SRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
+ + +Q + Y+E+ Y
Sbjct: 309 KGRAAQAAIRSALAKDVKVSNQDVKEYYESHESTYNPKT 347
>gi|56783603|dbj|BAD81049.1| hypothetical membrane protein [Lactobacillus brevis]
Length = 428
Score = 37.1 bits (83), Expect = 7.8, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 1 MLEIIRKASRTWVAKIFLVVL--FVPFLIWGLSDALFSVSGSSTVVSVGRQK 50
M ++IR R W+A + + + V F G+ +++ V V K
Sbjct: 1 MFDVIRSK-RYWLALLLVGAIIGIVSFAFIGIRNSV--KVKQIPVALVNEDK 49
>gi|23098603|ref|NP_692069.1| post-translocation molecular chaperone [Oceanobacillus iheyensis
HTE831]
gi|46396906|sp|Q8CXK4|PRSA_OCEIH RecName: Full=Foldase protein prsA; Flags: Precursor
gi|22776830|dbj|BAC13104.1| protein secretion (post-translocation molecular chaperone)
[Oceanobacillus iheyensis HTE831]
Length = 299
Score = 37.1 bits (83), Expect = 7.8, Method: Composition-based stats.
Identities = 29/240 (12%), Positives = 81/240 (33%), Gaps = 12/240 (5%)
Query: 391 LEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPL 450
EEF ++ S +++V++ + ++ D + +E + + F
Sbjct: 37 KEEFYEELKDVNGESTLQQLVTVKVLEDNYEVTDEELEEEISTMKEGFPSEEDFNTTVEQ 96
Query: 451 SKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEY 510
L + Y+ + +++ EE L ++ + T A+ + + + V E
Sbjct: 97 QFGGEEQLREIMYVSMLQEKAAAEDVEITEEDLQELYERKNTEIQAQHILLENEEDVAEV 156
Query: 511 SKE---GKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSGPVEMVKCFPIE 566
++ G++F ++ + + + + FS + P++
Sbjct: 157 QQKIEDGEDFGELAQEYSTDTGSAENGGDLGYFSAGSMVPEFEEAAFSLEAGEI-SDPVQ 215
Query: 567 NGLSYVVFKVTNSKVGPVQ-------EKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVH 619
+ + KV + + +K+ L +++ + I L V ++
Sbjct: 216 STHGTHIIKVNDVREKEESIGEFEDVKKELEREILLNRVDQTQIQEKINKLIQDAGVQIN 275
>gi|293556277|ref|ZP_06674862.1| foldase protein PrsA [Enterococcus faecium E1039]
gi|291601536|gb|EFF31803.1| foldase protein PrsA [Enterococcus faecium E1039]
Length = 336
Score = 37.1 bits (83), Expect = 8.0, Method: Composition-based stats.
Identities = 29/311 (9%), Positives = 82/311 (26%), Gaps = 37/311 (11%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
++ + + + S + + ++ + S F
Sbjct: 2 KKKSIILAATSALAVLTLAAC-------SGDTNKDIATMKGGTITVSDFY---------- 44
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+ A+ ++ ++ ++ + G + +V E +
Sbjct: 45 ----------DEAKLESSNQSLVQRMIIYKVFNN---KYGDKVTDKQVDAE-------YD 84
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
K K D F S+L G + Y ++ L+ + V ++
Sbjct: 85 KQAKSLGDTFESQLEAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAWKSFHPEV 144
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
E + + + + ++ + + E +++
Sbjct: 145 EAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTIPAEVK 204
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
+ +L+ + +P E V K ++ K + +A E S
Sbjct: 205 EAAFKLKDGEISDVITTTNPTSYATEYYVVKMVKNQNKGNDMDKYKDQLKDIATEIKLSD 264
Query: 308 SDISLGSFSKE 318
+ + +E
Sbjct: 265 NAFTTKVIGEE 275
>gi|126649428|ref|ZP_01721669.1| peptidylprolyl isomerase [Bacillus sp. B14905]
gi|126593753|gb|EAZ87676.1| peptidylprolyl isomerase [Bacillus sp. B14905]
Length = 326
Score = 37.1 bits (83), Expect = 8.0, Method: Composition-based stats.
Identities = 30/186 (16%), Positives = 67/186 (36%), Gaps = 7/186 (3%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADS 328
++ ++K A EA + +K G KF +A+E + LG FS + D +
Sbjct: 141 RHILVADEKTAKEAIEKIKGGAKFADVAKEYSTDTASAQNGGELGWFSVGSMVDEFNDAA 200
Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
+ + + SFGY + +++ + V + +++ ++K ++ E
Sbjct: 201 --YALELNTLSEPVKSSFGYHVIEITDKRDVKDVGAFKDEEEKIRTSMLSKLNQTG-EAQ 257
Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
L++ +A + +K + L ++ A E+ + D
Sbjct: 258 TILKDIVAKMAKDANVKTSDKDLKDSLEFFTTTSEEQAKAAEEAAKKAEENAAKEESSDK 317
Query: 449 PLSKDH 454
D
Sbjct: 318 AEDTDK 323
>gi|227508896|ref|ZP_03938945.1| peptidylprolyl isomerase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227191657|gb|EEI71724.1| peptidylprolyl isomerase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 295
Score = 37.1 bits (83), Expect = 8.0, Method: Composition-based stats.
Identities = 24/267 (8%), Positives = 67/267 (25%), Gaps = 33/267 (12%)
Query: 26 LIWGLS-DALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
++ G+ + S + +V ++ + ++ +
Sbjct: 9 ILAGIGAGLILSACSNQSVATINGSNITKDAYYQ--------------------EMKDSP 48
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE 144
++ L ++ L+ + G + + V ++ +G F + L +
Sbjct: 49 SGQQALGQMILDKGLE---KQYGNKVKNTAVTRQLNTVKKQYG-------ASFGAFLTQN 98
Query: 145 GINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPA 204
G+ +Y + + L + ++L Q K + + +V
Sbjct: 99 GLTASQYKRNLKEDLLLRAAIK--ADTKFTPDMLKQQFKHYQPKVTVNQILVSKKATAQK 156
Query: 205 IADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKY 264
+ + NA + + K+ I + K
Sbjct: 157 VINQLNAGHSFAKLAAAYSTDTATKKKSGRISPFDNTNTTLDPNFKKAAFKLKTGQYTKT 216
Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLK 291
E + N +
Sbjct: 217 PVKTQYGYEVIQMVNHPAKGTYQNHKE 243
>gi|225025209|ref|ZP_03714401.1| hypothetical protein EIKCOROL_02106 [Eikenella corrodens ATCC
23834]
gi|224941967|gb|EEG23176.1| hypothetical protein EIKCOROL_02106 [Eikenella corrodens ATCC
23834]
Length = 288
Score = 37.1 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 41 STVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
TVV+V ++ S + Q++ +I+++ V S L + I LV+ +
Sbjct: 22 QTVVTVNNTRIDSS----AIDQQVKIINEQSNGQVT----DSPELRENIARRLVTRELMI 73
Query: 101 QFIEDIGLEADHG 113
Q + L
Sbjct: 74 QESRRLRLNESPE 86
>gi|69244418|ref|ZP_00602834.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
DO]
gi|258614785|ref|ZP_05712555.1| rotamase family protein [Enterococcus faecium DO]
gi|293560739|ref|ZP_06677218.1| foldase protein PrsA [Enterococcus faecium E1162]
gi|293566174|ref|ZP_06678577.1| foldase protein PrsA [Enterococcus faecium E1071]
gi|314938540|ref|ZP_07845824.1| putative foldase protein PrsA [Enterococcus faecium TX0133a04]
gi|314940885|ref|ZP_07847791.1| putative foldase protein PrsA [Enterococcus faecium TX0133C]
gi|314948094|ref|ZP_07851496.1| putative foldase protein PrsA [Enterococcus faecium TX0082]
gi|314952022|ref|ZP_07855045.1| putative foldase protein PrsA [Enterococcus faecium TX0133A]
gi|314991903|ref|ZP_07857358.1| putative foldase protein PrsA [Enterococcus faecium TX0133B]
gi|314995161|ref|ZP_07860275.1| putative foldase protein PrsA [Enterococcus faecium TX0133a01]
gi|68196359|gb|EAN10787.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Enterococcus faecium
DO]
gi|291590100|gb|EFF21892.1| foldase protein PrsA [Enterococcus faecium E1071]
gi|291605330|gb|EFF34785.1| foldase protein PrsA [Enterococcus faecium E1162]
gi|313590570|gb|EFR69415.1| putative foldase protein PrsA [Enterococcus faecium TX0133a01]
gi|313593487|gb|EFR72332.1| putative foldase protein PrsA [Enterococcus faecium TX0133B]
gi|313595812|gb|EFR74657.1| putative foldase protein PrsA [Enterococcus faecium TX0133A]
gi|313600243|gb|EFR79086.1| putative foldase protein PrsA [Enterococcus faecium TX0133C]
gi|313642097|gb|EFS06677.1| putative foldase protein PrsA [Enterococcus faecium TX0133a04]
gi|313645510|gb|EFS10090.1| putative foldase protein PrsA [Enterococcus faecium TX0082]
Length = 336
Score = 37.1 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 29/311 (9%), Positives = 82/311 (26%), Gaps = 37/311 (11%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
++ + + + S + + ++ + S F
Sbjct: 2 KKKSIILAATSALAVLTLAAC-------SGDTNKDIATMKGGTITVSDFY---------- 44
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+ A+ ++ ++ ++ + G + +V E +
Sbjct: 45 ----------DEAKLESSNQSLVQRMIIYKVFNN---KYGDKVTDKQVDAE-------YD 84
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
K K D F S+L G + Y ++ L+ + V ++
Sbjct: 85 KQAKSLGDTFESQLEAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAWKSFHPEV 144
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
E + + + + ++ + + E +++
Sbjct: 145 EAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTIPAEVK 204
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
+ +L+ + +P E V K ++ K + +A E S
Sbjct: 205 EAAFKLKDGEISDVITTTNPTSYATEYYVVKMVKNQNKGNDMDKYKDQLKDIATETKLSD 264
Query: 308 SDISLGSFSKE 318
+ + +E
Sbjct: 265 NAFTTKVIGEE 275
>gi|119582244|gb|EAW61840.1| transcription elongation regulator 1, isoform CRA_a [Homo sapiens]
Length = 860
Score = 37.1 bits (83), Expect = 8.2, Method: Composition-based stats.
Identities = 44/423 (10%), Positives = 113/423 (26%), Gaps = 13/423 (3%)
Query: 214 TQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVE 273
++ + E + + EK K+ E E +E I+ ++
Sbjct: 423 KTYYYNNRTLESTWEKPQELKEKEKLEEKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIK 482
Query: 274 QLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLA 333
+ + +E K + + F +S+ D L
Sbjct: 483 EEPKEEEMTEEEKAAQKAKPVATAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDLI 542
Query: 334 KKGDFTPVI-HGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLE 392
+ D +I + + ++ K + + + +
Sbjct: 543 GRADVDKIIQEPPHKKGMEELKKLRHPTPTMLSIQKWQFSMSAIKEEQELMEEINEDEPV 602
Query: 393 EFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSK 452
+ ++ EK +++ + + + E +K+ LL R K
Sbjct: 603 KAKKRKRDDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKDMLLERGVSAFSTWEK 662
Query: 453 DHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSK 512
+ + D Y+ + KE D+ ++ + +++ K K + +
Sbjct: 663 ELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERRE-KKNKIMQAKEDFKKMMEEAKFN 721
Query: 513 EGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYV 572
F + I +M + F + ++ E K + +
Sbjct: 722 PRATFSEFAAKHAKD-SRFKAIEKMKDREALF-NEFVAAARKKEKEDSKTRGEKIKSDFF 779
Query: 573 VFKVT---------NSKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLI 623
+ V+ ++ + + M +DL I + L
Sbjct: 780 ELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYIEKIAKNLDSEKEKELE 839
Query: 624 QRY 626
++
Sbjct: 840 RQA 842
>gi|153951254|ref|YP_001398165.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. doylei
269.97]
gi|152938700|gb|ABS43441.1| major antigenic peptide PEB4 [Campylobacter jejuni subsp. doylei
269.97]
Length = 273
Score = 37.1 bits (83), Expect = 8.3, Method: Composition-based stats.
Identities = 8/87 (9%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
+ L + ++TV +V + + + + + + + +
Sbjct: 4 FSLVAAALIAGVALNVNAATVATVNGKSISDTEVSEFFASM---LRGQDFKTLPDNQ--- 57
Query: 83 VGLDKKILDNLVSGATLDQFIEDIGLE 109
K ++ + + Q + LE
Sbjct: 58 ---KKALIQQYIMQDLILQDAKKQNLE 81
>gi|223039645|ref|ZP_03609931.1| foldase protein PrsA [Campylobacter rectus RM3267]
gi|222879028|gb|EEF14123.1| foldase protein PrsA [Campylobacter rectus RM3267]
Length = 270
Score = 37.1 bits (83), Expect = 8.4, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 25 FLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVG 84
FL LS A ++ +V + + G+ +++
Sbjct: 4 FLFATLSLAAAMSLNAAVHATVNGSDITDKDIAFTLAAMPGVTLEQLPKDT--------- 54
Query: 85 LDKKILDNLVSGATLDQFIEDIGLEADHG 113
KK++D +S L + GLE
Sbjct: 55 -QKKVIDETISRKLLLDEAKKSGLEKTDE 82
>gi|187251883|ref|YP_001876365.1| hypothetical protein Emin_1480 [Elusimicrobium minutum Pei191]
gi|186972043|gb|ACC99028.1| hypothetical protein Emin_1480 [Elusimicrobium minutum Pei191]
Length = 286
Score = 37.1 bits (83), Expect = 8.4, Method: Composition-based stats.
Identities = 17/176 (9%), Positives = 43/176 (24%), Gaps = 12/176 (6%)
Query: 40 SSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATL 99
S+ + +VG + F N+ I +N + + +++ LV +
Sbjct: 30 SNALANVGGVFITQKDFDNAV----------IDETLNRKYLETSFGKNALINALVREQLI 79
Query: 100 DQFIEDIGLEADHGRVWGE--IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTK 157
Q G + I ++ K + + E + K
Sbjct: 80 QQASLKSGSAQSEEFIKTITDIQNDFSKRLEETKKEVATKIWIDSLRNKGEISVTEDEIK 139
Query: 158 MLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVL 213
+ M + M ++ + + + +
Sbjct: 140 DYHKKYSYEMTIRQMLLTDPDTANLVLRELKATNNSNREKRFIELAKRYSIDLDDV 195
>gi|52079178|ref|YP_077969.1| Type 1 site specific deoxyribonuclease protein HsdRI [Bacillus
licheniformis ATCC 14580]
gi|52784545|ref|YP_090374.1| hypothetical protein BLi00746 [Bacillus licheniformis ATCC 14580]
gi|52002389|gb|AAU22331.1| Type 1 Site Specific deoxyribonuclease protein HsdRI [Bacillus
licheniformis ATCC 14580]
gi|52347047|gb|AAU39681.1| putative protein [Bacillus licheniformis ATCC 14580]
Length = 1052
Score = 37.1 bits (83), Expect = 8.4, Method: Composition-based stats.
Identities = 26/424 (6%), Positives = 107/424 (25%), Gaps = 10/424 (2%)
Query: 111 DHGRVWGEIARSPLFHGKDNKFSHDVFVSRLARE-GINEKEYIDHYTKMLSRTDVVGMFV 169
+ I + KF + + + + Y + + ++
Sbjct: 551 SDDHIQKVIHKIFRPDNAYTKFDFQNGRPQKSAILTTSSIDMAKRYYRAIKEMMKDSDWL 610
Query: 170 GGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEY 229
+ + + + + + + E + A
Sbjct: 611 TKEFAGHPIRTGRTIEDPDFPRIAITYSIQENEDNSKQIQDEMKEIIKEYNDYYHTAWSI 670
Query: 230 KRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQS 289
+ I D++ + + + E + + +
Sbjct: 671 EDIERYNGDINNRLARKKAEFKEFGKQIDLVIVVDRLLTGFDAPTIQTLFVDRNLSYANL 730
Query: 290 LKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYV 349
++ + + + + +F K + ++ ++ ++ + + +++ ++
Sbjct: 731 IQAFSRTNRT----YPGKTKGLVVTFRKPSTMEQNVKNATKLYSQAQEESSLVYPTYDES 786
Query: 350 IAHVSNIKPSFTVSFQEVK--KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRR 407
+ T + + + + +E E + D++ +
Sbjct: 787 KKRFKKAHKALTTLVPNPTDIDENTSLETRIEFVKAFQELNNSYEALVTYNDYNDDMKKS 846
Query: 408 EKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ L ++ G K + F + ++ S +
Sbjct: 847 PALQEQVKTLEEYIGIYNTVKGSLEDEGNQDGPGPDFSDIEFYGENAVKIYDIDSTYIDR 906
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGAS 527
+ E + + +++ + +K +E V +++ + + + S
Sbjct: 907 LLE---TYSANNQNIRDEIENALQKLKKSEIVKGVYRKMLNAIDANEIDAEEDILAVKRS 963
Query: 528 LLTT 531
T
Sbjct: 964 FFTK 967
>gi|67600850|ref|XP_666359.1| T10G3.5 [Cryptosporidium hominis TU502]
gi|54657342|gb|EAL36131.1| T10G3.5 [Cryptosporidium hominis]
Length = 1206
Score = 37.1 bits (83), Expect = 8.5, Method: Composition-based stats.
Identities = 36/484 (7%), Positives = 124/484 (25%), Gaps = 14/484 (2%)
Query: 54 SSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG 113
F K+ S N+E + L + + +D+ ++
Sbjct: 600 KEFEEKLKRVQDEFSS--NEASNNELLHQYYSYIQDLQHRFEEMQENMQGKDLKIKISEE 657
Query: 114 RVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMR 173
+ + + +L + + + +
Sbjct: 658 EIQKLKSEI------------EELRIKLEEKKREFMLASEKLEGYERENQRLRESNEELI 705
Query: 174 PSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRIS 233
+ L ++ + ++ + + + E S
Sbjct: 706 SLSKLNEENSKQERIVLIEEHKQELELMEKFSREQDEHINQLQKSIGDLSEERSELLNQS 765
Query: 234 YILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKG 293
L + K + E +++ E+ S +++ E+ +
Sbjct: 766 EQLRNEIMIIKAQVENLVEEKSKIEEEVLTLSSQNQDKSSRIIELESMIGTESQRMETVS 825
Query: 294 KKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHV 353
++ +L + + I K I + S+ + + + +
Sbjct: 826 REMEELKGLKSQMEQKIEEIEKEKIQIESELRLEKESSVENFEKLSKELEEMTLKSQSLM 885
Query: 354 SNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSI 413
K +++K+++ ++ E + + E++ +
Sbjct: 886 EASKDEMESERRKLKEELESKTEEYNKHINWLESEISRVDEEWRTRQTHIEANYEQLYAQ 945
Query: 414 DLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIP 473
+ L G+ +E E++ + + + + S + ++K+
Sbjct: 946 YMDLSSREGELGTLQERVNELESEKVNRNEYISELETKLNESQNDNRVSELEERLKKIEI 1005
Query: 474 ARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQ 533
+++ ++ + + E+ ++ + + G L +
Sbjct: 1006 QNQDNSDKLKESEEEILRGKMSISELEARLESETGRNKSLSDEVESLQNSNGTYLARIEE 1065
Query: 534 INRM 537
+ R
Sbjct: 1066 LERR 1069
>gi|154148224|ref|YP_001407264.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
gi|153804233|gb|ABS51240.1| foldase protein PrsA [Campylobacter hominis ATCC BAA-381]
Length = 271
Score = 37.1 bits (83), Expect = 8.6, Method: Composition-based stats.
Identities = 37/197 (18%), Positives = 71/197 (36%), Gaps = 11/197 (5%)
Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
+ A + + K + ++ I++S+ E++ Y KNK+K+ P
Sbjct: 69 INEAKKNGIEKDELYKKQLEIAKDNIALRTWQEKEFNNIKVSDKEIEDFYNKNKDKFIEP 128
Query: 268 EIRTVEQLVFPNQKEADEAFQS------LKKGKKFIQLAEEQGKS----LSDISLGSFSK 317
++ + A + KKF ++A+E+ + LG F K
Sbjct: 129 ASIAASHILVEKEDNAKKIIADLSKLKGDALKKKFAEIAKEKSLDPSGKQNGGDLGYFVK 188
Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
E + ++ L K + FGY I ++ K + EVK I N ++
Sbjct: 189 EQMV-PEFGEAANKLKKGELTKTPVKTKFGYHIILKNDAKDKKQLDLAEVKDHIKNIVKQ 247
Query: 378 TKASEKVKEDYKRLEEF 394
K ++ K L+
Sbjct: 248 EKFQADFEKKIKDLKSK 264
>gi|320102100|ref|YP_004177691.1| hypothetical protein Isop_0549 [Isosphaera pallida ATCC 43644]
gi|319749382|gb|ADV61142.1| hypothetical protein Isop_0549 [Isosphaera pallida ATCC 43644]
Length = 549
Score = 37.1 bits (83), Expect = 8.7, Method: Composition-based stats.
Identities = 21/162 (12%), Positives = 53/162 (32%), Gaps = 14/162 (8%)
Query: 465 WVQIKESIPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNL 524
Q +E + + + +VL ++++ +K E S+ Q + +K D+ K
Sbjct: 194 LAQRREQLDEKQAETAKVLAEIEQGLDRLKKPEAPQSQ-EQALANLNK----LIDVAKQR 248
Query: 525 GASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV 584
L + + R +G ++ + + + +V K+T
Sbjct: 249 REQLESVENMARQMERMAALSQEGPAEQLAKDLANGDPEKAAETVKTLVEKLTKPNEMSA 308
Query: 585 QEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
++K + L + L+ Q ++ +
Sbjct: 309 RDKQALTNQL---------QEMSKELRKQANLEEKRKQLDEA 341
>gi|15594385|ref|NP_212173.1| hypothetical protein BB0039 [Borrelia burgdorferi B31]
gi|195941779|ref|ZP_03087161.1| hypothetical protein Bbur8_02719 [Borrelia burgdorferi 80a]
gi|218249405|ref|YP_002374573.1| hypothetical protein BbuZS7_0039 [Borrelia burgdorferi ZS7]
gi|223889087|ref|ZP_03623676.1| conserved hypothetical protein [Borrelia burgdorferi 64b]
gi|226320786|ref|ZP_03796342.1| conserved hypothetical protein [Borrelia burgdorferi 29805]
gi|226322046|ref|ZP_03797571.1| conserved hypothetical protein [Borrelia burgdorferi Bol26]
gi|3915328|sp|O51068|Y039_BORBU RecName: Full=Uncharacterized protein BB_0039
gi|2687915|gb|AAC66424.1| predicted coding region BB0039 [Borrelia burgdorferi B31]
gi|218164593|gb|ACK74654.1| conserved hypothetical protein [Borrelia burgdorferi ZS7]
gi|223885336|gb|EEF56437.1| conserved hypothetical protein [Borrelia burgdorferi 64b]
gi|226232636|gb|EEH31390.1| conserved hypothetical protein [Borrelia burgdorferi Bol26]
gi|226233841|gb|EEH32566.1| conserved hypothetical protein [Borrelia burgdorferi 29805]
Length = 500
Score = 37.1 bits (83), Expect = 8.7, Method: Composition-based stats.
Identities = 25/209 (11%), Positives = 53/209 (25%), Gaps = 16/209 (7%)
Query: 10 RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVGRQKVPF---SSFINSW 60
+ ++ + F G+ D S S Q + + S F
Sbjct: 20 KKVGMWGIFALILIVFGFIIAPLLPGIFDNAHSSGLK--FGSYKGQPIYYKKDSKFAKYV 77
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ S+ G N V ++ + +
Sbjct: 78 NYYSNLYSRLQGNAKNIN--TDYNAWYLAFMKYVEDVAFLDLVKKYNFYISKEMLNKNLL 135
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+SP + FS + + + D + + ++V + + L D
Sbjct: 136 KSPEYLDSSGNFSSKRYN---KASDYQKVKIYDDMVENILFSNVKIFLNSNLIFPDSLFD 192
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPS 209
K R + Y+ L+ + S
Sbjct: 193 MIKNMSTVERHISYLSLSYQDFSNKEVIS 221
>gi|225549707|ref|ZP_03770672.1| conserved hypothetical protein [Borrelia burgdorferi 118a]
gi|225369667|gb|EEG99115.1| conserved hypothetical protein [Borrelia burgdorferi 118a]
Length = 500
Score = 37.1 bits (83), Expect = 8.8, Method: Composition-based stats.
Identities = 53/479 (11%), Positives = 122/479 (25%), Gaps = 16/479 (3%)
Query: 10 RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVGRQKVPF---SSFINSW 60
+ ++ + F G+ D S S Q + + S F
Sbjct: 20 KKVGMWGIFALILIVFGFIIAPLLPGIFDNAHSSGLK--FGSYKGQPIYYKKDSKFAKYV 77
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ S+ G N V ++ + +
Sbjct: 78 NYYSNLYSRLQGNAKNIN--TDYNAWYLAFMKYVEDVAFLDLVKKYNFYISKEMLNKNLL 135
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+SP + FS + + + D + + +++ + + L D
Sbjct: 136 KSPEYLDSSGNFSSKRYN---KASDYQKVKIYDDMVENILFSNIKIFLNSNLIFPDSLFD 192
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K R + Y+ L+ + S A K
Sbjct: 193 MIKNMSTVERHISYLSLSYQDFSNKEVISYAEKNLNLFKRLSLASIRFKNMNDARNAHDK 252
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
K +L ++ N + S + + + +KE + SL++G+ +
Sbjct: 253 LLNKTPFEELAKLYSDDIANFKGVVSLDKYYFDLDLNVEKKEDLNSIFSLREGEFSKPIK 312
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ S ++ + S + VI G ++
Sbjct: 313 IKNKNEYQIYKAFSNVHDFDKNSDRDISSVKNYIETYEPSVIEGYLENKLSDFLGDVKFS 372
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
++S K ++ + I S + L+E + S +
Sbjct: 373 SLSQVLEKYQLSLKEEIVNLSYNINVYPNTLKELVEFNNSKSFYDIIFGLKENSWSKPFV 432
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
A K V + ++ + L + L + + + K+ + +
Sbjct: 433 ANKKVYLFFLNSVKKRSNQLKDEIKNEKILDNFNIANSGLITDFLLNKKDFVNNFNESF 491
>gi|160890578|ref|ZP_02071581.1| hypothetical protein BACUNI_03021 [Bacteroides uniformis ATCC 8492]
gi|270295715|ref|ZP_06201915.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317479880|ref|ZP_07938997.1| ppic-type ppiase domain-containing protein [Bacteroides sp. 4_1_36]
gi|156859577|gb|EDO53008.1| hypothetical protein BACUNI_03021 [Bacteroides uniformis ATCC 8492]
gi|270273119|gb|EFA18981.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|290769660|gb|ADD61440.1| putative protein [uncultured organism]
gi|316903954|gb|EFV25791.1| ppic-type ppiase domain-containing protein [Bacteroides sp. 4_1_36]
Length = 455
Score = 37.1 bits (83), Expect = 8.8, Method: Composition-based stats.
Identities = 39/497 (7%), Positives = 113/497 (22%), Gaps = 85/497 (17%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSG--SSTVVSVGRQKVPFSSFINSWKQELGMISQKI-GF 73
F+++ + L + ++ V VG + + S + +S G
Sbjct: 9 FVILFALTLL---VGSTVYGQDNVIDEVVWVVGDEAILKSEVEEA------RMSALYEGR 59
Query: 74 VVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFS 133
+ + + + + +E V + + +
Sbjct: 60 KFDRDPYCVIP------EEIAVQKLYLHQAALDSIEVSESEVIQRVDYMTNMYIANIGSR 113
Query: 134 HDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVD 193
+ + ++ + L + VG
Sbjct: 114 EKMEEYFNKTSSQIRETLRENAREGLKVQKMQQKLVG----------------------- 150
Query: 194 YIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ A + ++F+ + + E+
Sbjct: 151 -----------EIKITPAEVRRYFKDLPQD-------------------SIPYIPTQVEV 180
Query: 254 QAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLG 313
Q ++ K E +E + + +L E S
Sbjct: 181 QIITQQPKVPLEEIEDVKRR------LREYTDRVNKGESFSMLARLYSEDRGSAMRGGEI 234
Query: 314 SFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIAN 373
FS + D + A+ F+L + ++ +G+ I + + + + +
Sbjct: 235 EFSGRGMLDPAYANVAFNLQDPSKVSKIVESEYGFHIIQLIEKRGDRIKTRHIL---LKP 291
Query: 374 QMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAI 433
+ + ++ S +E + +
Sbjct: 292 HIPEEALAAGCARLDSIADDIRNNKFSFEEAASVLSQDKDTRNNHGLLPNPNTNTSRFEM 351
Query: 434 PYKEQLLFRVFGKDDPLSKDHTVA-----LPDGSYMWVQIKESIPARDRKLEEVLTDVKK 488
+ +V K + V++K + + ++K+
Sbjct: 352 QELPPEIAKVVDKMKVGEISEAFTMIPQKTGKEECVIVKLKSRTTGHKATIADDYQNLKE 411
Query: 489 DWKTVKTAEEVSSKANQ 505
+ E + +
Sbjct: 412 IVLEKRRDEVLDKWIRE 428
>gi|226327126|ref|ZP_03802644.1| hypothetical protein PROPEN_00991 [Proteus penneri ATCC 35198]
gi|225204344|gb|EEG86698.1| hypothetical protein PROPEN_00991 [Proteus penneri ATCC 35198]
Length = 135
Score = 37.1 bits (83), Expect = 8.9, Method: Composition-based stats.
Identities = 11/133 (8%), Positives = 40/133 (30%), Gaps = 6/133 (4%)
Query: 497 EEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMD-NENKFFGYDGISQVFSG 555
E+ +K Q+ + F D + + + + + + +
Sbjct: 4 EQAYAKLQQISADIRSGKITFADAAREYSEDPGSALRGGELGWSMPDVYDPAFRDALMRL 63
Query: 556 PVEMVKCFPIENGLSYVVFKVTN---SKVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKS 612
+ P+ + + + ++ + K++ L + + + + L+
Sbjct: 64 NKNELSQ-PVRSNFGWHLIELEDTRSVDKTDAANKEQAYRLLFNRKFNEEVQNWMQELRV 122
Query: 613 QYSVTV-HDNLIQ 624
V + ++N
Sbjct: 123 GAYVKIMNENNAN 135
>gi|224533031|ref|ZP_03673637.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23]
gi|224533908|ref|ZP_03674493.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a]
gi|224512025|gb|EEF82420.1| conserved hypothetical protein [Borrelia burgdorferi WI91-23]
gi|224512911|gb|EEF83277.1| conserved hypothetical protein [Borrelia burgdorferi CA-11.2a]
gi|312149053|gb|ADQ29124.1| conserved hypothetical protein [Borrelia burgdorferi N40]
Length = 500
Score = 37.1 bits (83), Expect = 8.9, Method: Composition-based stats.
Identities = 54/479 (11%), Positives = 122/479 (25%), Gaps = 16/479 (3%)
Query: 10 RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVGRQKVPF---SSFINSW 60
+ ++ + F G+ D S S Q + + S F
Sbjct: 20 KKVGMWGIFALILIVFGFIIAPLLPGIFDNAHSSGLK--FGSYKGQPIYYKKDSKFAKYV 77
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ S+ G N V ++ + +
Sbjct: 78 NYYSNLYSRLQGNAKNIN--TDYNAWYLAFMKYVEDVAFLDLVKKYNFYISKEMLNKNLL 135
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+SP + FS + + + D + + ++V + + L D
Sbjct: 136 KSPEYLDSSGNFSSKRYN---KASDYQKVKIYDDMVENILFSNVKIFLNSNLIFPDSLFD 192
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K R + Y+ L+ + S A K
Sbjct: 193 MIKNMSTVERHISYLSLSYQDFSNKEVISYAEKNLNLFKRLSLASIRFKNMNDARNAHDK 252
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
K +L ++ N + S + + + +KE + SL++G+ +
Sbjct: 253 LLNKTPFEELAKLYSDDIANFKGVVSLDKYYFDLDLNVEKKEDLNSIFSLREGEFSKPIK 312
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ S ++ + S + VI G ++
Sbjct: 313 IKNKNEYQIYKAFSNVHDFDKNSDRDISSVKNYIETYEPSVIEGYLENKLSDFLGDVKFS 372
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
++S K ++ + I S + L+E + S +
Sbjct: 373 SLSQVLEKYQLSLKEEIVNLSYNINVYPNTLKELVEFNNSKSFYDIIFGLKENSWSKPFV 432
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
A K V + ++ + L + L + + + K+ + +
Sbjct: 433 ANKKVYLFFLNSVKKRSNQLKDEIKNEKILDNFNIANSGLITDFLLNKKDFVNNFNESF 491
>gi|119478393|ref|ZP_01618401.1| hypothetical protein GP2143_12169 [marine gamma proteobacterium
HTCC2143]
gi|119448602|gb|EAW29848.1| hypothetical protein GP2143_12169 [marine gamma proteobacterium
HTCC2143]
Length = 277
Score = 37.1 bits (83), Expect = 8.9, Method: Composition-based stats.
Identities = 9/165 (5%), Positives = 43/165 (26%), Gaps = 5/165 (3%)
Query: 86 DKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGK-----DNKFSHDVFVSR 140
+++D V L + + + L+ + + R F + + + D +
Sbjct: 59 RNQLIDQYVREEALYREAKSLKLDRSDYTIRQRLIRQLEFINEGFIATNIDITDDDLLRY 118
Query: 141 LAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNR 200
L + + L + + ++++ +
Sbjct: 119 LTENKQRYLVDQKITFTHIFFSADKHQGKELNSAHLKLNELNRSKVSFHQALPHGDRFLY 178
Query: 201 HVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245
+ + + + + + + ++ + + +
Sbjct: 179 NRNYVEKNAATIASHFGDDFQQQVFSTGANDMQWQGPFSSPFGSH 223
>gi|299537572|ref|ZP_07050865.1| foldase protein prsA 1 precursor [Lysinibacillus fusiformis ZC1]
gi|298726941|gb|EFI67523.1| foldase protein prsA 1 precursor [Lysinibacillus fusiformis ZC1]
Length = 326
Score = 37.1 bits (83), Expect = 9.0, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 66/186 (35%), Gaps = 7/186 (3%)
Query: 273 EQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKS----LSDISLGSFSKEYIPDVSLADS 328
++ ++K A E + +K G KF +A+E LG FS + D +
Sbjct: 141 RHILVADEKTAKEVIEKIKGGAKFEDVAKEYSTDTGSAQKGGELGWFSVGSMVDEFNDAA 200
Query: 329 IFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDY 388
+ + + SFGY + +++ + V + +++ + K ++ E
Sbjct: 201 --YALELNTLSEPVKSSFGYHVIEITDKRDVKGVGSFKDEEENIRSTMLNKLNQTG-EAQ 257
Query: 389 KRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDD 448
L++ +A ++ +K + L ++ A E+ + +D
Sbjct: 258 TILKDIVAKMAKDADVKTSDKDLKEPLKFFTTTSEEQAKAAEEAAKKAEENAPKEDSEDK 317
Query: 449 PLSKDH 454
D
Sbjct: 318 AEDTDK 323
>gi|212690536|ref|ZP_03298664.1| hypothetical protein BACDOR_00018 [Bacteroides dorei DSM 17855]
gi|237708008|ref|ZP_04538489.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
gi|212666885|gb|EEB27457.1| hypothetical protein BACDOR_00018 [Bacteroides dorei DSM 17855]
gi|229457994|gb|EEO63715.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 9_1_42FAA]
Length = 456
Score = 37.1 bits (83), Expect = 9.0, Method: Composition-based stats.
Identities = 31/289 (10%), Positives = 74/289 (25%), Gaps = 25/289 (8%)
Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIV 411
P ++ F + ++ K ++ E K+ + EI+
Sbjct: 160 RYFKDLPQDSIPFIPTQVEVQIITMEPKIPQEEIERVKKTLRDYTERVTSGEIAFSTLAR 219
Query: 412 SIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKES 471
+ + + + F DP V G ++ I++
Sbjct: 220 LYSEDEGSRR-RGGELGFMGRAELVPEYANVAFNLQDPNKVSKIVESEFGFHIIQLIEKR 278
Query: 472 IPARDRKLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTT 531
+ + + V K E + + + + E F D + T
Sbjct: 279 GDRINTRHILLKPKV-----DEKDLEAALLRLDSIANDIRNEKFTFDDAATYISHDKDTR 333
Query: 532 NQINRMDNENKF-----------FGYDGISQVFSGPVEMVKC----FPIENGLSYVVFKV 576
N M N + V V + + + K+
Sbjct: 334 NNHGLMANPQTGTARFEMQQLAQVSQEAAKMVEGMNVGEISKPFTMINAKGKEICAIVKL 393
Query: 577 TNS----KVGPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDN 621
K ++ + + + +++ LD I + V +++
Sbjct: 394 KTRLNGHKATITEDYQRLKGIVMEKRSEEKLDKWIKDKQKHTYVRINEK 442
>gi|315931794|gb|EFV10749.1| major antigenic factor PEB4A [Campylobacter jejuni subsp. jejuni
327]
Length = 194
Score = 37.1 bits (83), Expect = 9.1, Method: Composition-based stats.
Identities = 8/87 (9%), Positives = 26/87 (29%), Gaps = 9/87 (10%)
Query: 23 VPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARS 82
+ L + ++TV +V + + + + + + + +
Sbjct: 4 FSLVAAALIAGVALNVNAATVATVNGKSISDTEVSEFFAPM---LRGQDFKTLPDNQ--- 57
Query: 83 VGLDKKILDNLVSGATLDQFIEDIGLE 109
K ++ + + Q + LE
Sbjct: 58 ---KKALIQQYIMQDLILQDAKKQNLE 81
>gi|125975115|ref|YP_001039025.1| hypothetical protein Cthe_2633 [Clostridium thermocellum ATCC
27405]
gi|256003230|ref|ZP_05428222.1| hypothetical protein ClothDRAFT_0189 [Clostridium thermocellum DSM
2360]
gi|281418466|ref|ZP_06249485.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum JW20]
gi|125715340|gb|ABN53832.1| hypothetical protein Cthe_2633 [Clostridium thermocellum ATCC
27405]
gi|255992921|gb|EEU03011.1| hypothetical protein ClothDRAFT_0189 [Clostridium thermocellum DSM
2360]
gi|281407550|gb|EFB37809.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum JW20]
gi|316939281|gb|ADU73315.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Clostridium
thermocellum DSM 1313]
Length = 364
Score = 37.1 bits (83), Expect = 9.1, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 28/108 (25%), Gaps = 11/108 (10%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMIS--QKIGFVVNSERARSVGL---------DK 87
+S V +V +K+ F + ++ + E + +
Sbjct: 36 ATSYVGTVAGEKITTKEFKYFLGYVKIQMENDAQLQDQASKEAFWDSKIEGVDAKELAKQ 95
Query: 88 KILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHD 135
K LD+ + GL + + + +F
Sbjct: 96 KALDSCKEFKIQLLKARERGLFLNDKDMQEIENSITTLLNQMAQFDQA 143
>gi|300779152|ref|ZP_07089010.1| peptidyl-prolyl cis-trans isomerase [Chryseobacterium gleum ATCC
35910]
gi|300504662|gb|EFK35802.1| peptidyl-prolyl cis-trans isomerase [Chryseobacterium gleum ATCC
35910]
Length = 455
Score = 37.1 bits (83), Expect = 9.2, Method: Composition-based stats.
Identities = 52/495 (10%), Positives = 121/495 (24%), Gaps = 74/495 (14%)
Query: 14 AKIFLVVLFVPFLIWGLSDALFSVS-GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIG 72
L + + F ++ L +G + V S I ++ G
Sbjct: 7 ITFLLGIFIMIFSSNMMNAQLKQGDLVDGIAAVIGDEIVLESDVIEQMN-----YGKQQG 61
Query: 73 FVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKF 132
+ L+NL+S L + + A
Sbjct: 62 AANTD--------KCEFLENLISNKLLVYEAKK------DTLIENRSAAIKEQANAK--- 104
Query: 133 SHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSV 192
+ L++ + + + +
Sbjct: 105 ----YRQLLSQFPDEKTLLAAYKFRNAYEMK-------------------NAIEKIDTDQ 141
Query: 193 DYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDE 252
Y + V AD + +T ++ YK +
Sbjct: 142 YYGQAKYQRVTDKADVTPNEVTDFYNMYKTQLPQVK------------------------ 177
Query: 253 LQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISL 312
Y S + L+ +K + + +E++G + +
Sbjct: 178 -DEVTLAQIMIYPSLTEAHKQDLINRLKKIKQDILAGETFESQARIYSEDEGSAANGGLY 236
Query: 313 GSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIA 372
+ +K + ++ ++ + + + FG+ I + + + K
Sbjct: 237 KNINKGQMVKP--FEAAALNLQENEISDPVESEFGFHIIQLVKRSGKVYDARHILLKATP 294
Query: 373 NQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAA 432
I A K+ + + +K + ++ E +
Sbjct: 295 TDEEIKTAKAKLDSIRGLIIDGKMTFKDAAFKFSDDKRTKFNAGVIP-GADGSDKIERES 353
Query: 433 IPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKT 492
IP K D + ++I++ IP+ LE + +K+
Sbjct: 354 IPGTISYELAGLNKGDITTAFEDEENKRKQIKIIKIEDVIPSHQITLETDFSRIKQMALN 413
Query: 493 VKTAEEVSSKANQLV 507
K +E V N +
Sbjct: 414 KKKSEMVEKFVNSKL 428
>gi|154505337|ref|ZP_02042075.1| hypothetical protein RUMGNA_02852 [Ruminococcus gnavus ATCC 29149]
gi|153794380|gb|EDN76800.1| hypothetical protein RUMGNA_02852 [Ruminococcus gnavus ATCC 29149]
Length = 750
Score = 37.1 bits (83), Expect = 9.3, Method: Composition-based stats.
Identities = 40/478 (8%), Positives = 118/478 (24%), Gaps = 40/478 (8%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
K+ +++ ++ G TV Q + + +++ + +
Sbjct: 4 KVIALLVICVMVLSGCGKTTPEEKSEETV-----QDIQQKEIADDFEELMEGTRELYEKA 58
Query: 75 VNSERARSVGLDKKILD----------------NLVSGATLDQFIEDIGLEADHGRVWGE 118
++ S+ K+++D ++V ++ + E V
Sbjct: 59 AENKLLDSLEFQKQVIDYLGQKGYAAVDMKDQVDMVHSEQVETYCEKAKRGESADVVIYS 118
Query: 119 IARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLL 178
+ + D + ++ + + Y G
Sbjct: 119 VIEQGGVVRYELHTDGDDMDAIVSTVRWTDNKPCMIYYHKFKVHSWKYTEKGYFFIEEYH 178
Query: 179 ------LDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRI 232
K F + LN ++V I N +L +++ +
Sbjct: 179 LPGFDGPPGEKGFRVKPLDQKLRELNQKYVLPIGYRLNNMLITNWKEEDYSNLNFYDLYE 238
Query: 233 SYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFP--NQKEADEAFQSL 290
++ E Q E+ + + T EQ+ +
Sbjct: 239 LKYPSIYGKEIPYAMKEGVEYQIPKEEFESVLQTLFPITSEQIQKNAVYNPDTQRYRYRP 298
Query: 291 KKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSI-FSLAKKGDFTPVIHGSFGYV 349
+ E + +S LG + + + + + + G +
Sbjct: 299 RGLHDCEFPYEPYSEVISYEELGDGKLKLVVEAVWKIEMLDQAFRSELVVEPLEGGKIHY 358
Query: 350 IAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREK 409
++ + ++D E+ +E Y++ ++ +
Sbjct: 359 VS----------NTILSPEEDEPRWYVPRLTDEQWREAYEKGYHLPIKKEEREKAEKDSI 408
Query: 410 IVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQ 467
+ + V + + ++ G+ +Y ++
Sbjct: 409 AALKLVQDIYAEADKGDASNVVLTDSVMEQMKKILGRGGVPVISSEEYSVMENYQVME 466
>gi|170720926|ref|YP_001748614.1| trigger factor [Pseudomonas putida W619]
gi|229558051|sp|B1J691|TIG_PSEPW RecName: Full=Trigger factor; Short=TF
gi|169758929|gb|ACA72245.1| trigger factor [Pseudomonas putida W619]
Length = 437
Score = 37.1 bits (83), Expect = 9.3, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 36/108 (33%)
Query: 47 GRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDI 106
+VP + N + Q+ G + E+ + +++ +V G + + ++
Sbjct: 298 NPIEVPKALLENEVNRLRVQAVQQFGGNIKPEQLPAELFEEQAKRRVVLGLIVAEVVKQF 357
Query: 107 GLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDH 154
L+ D G+V I + + + + + +
Sbjct: 358 ELKPDEGKVREMIEEMASAYQEPEQVIAWYLKNDQQMNEVRSVVLEEQ 405
>gi|256389422|ref|YP_003110986.1| lipoprotein [Catenulispora acidiphila DSM 44928]
gi|256355648|gb|ACU69145.1| lipoprotein [Catenulispora acidiphila DSM 44928]
Length = 250
Score = 37.1 bits (83), Expect = 9.3, Method: Composition-based stats.
Identities = 12/102 (11%), Positives = 31/102 (30%)
Query: 17 FLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVN 76
V+ + + + A + V Q+ ++ + + ++ +
Sbjct: 9 LAAVIVLGGAVALATSACGGPMQAGAAAVVQGQRTTDATVQDQVASIVSLVQHNNLQQGD 68
Query: 77 SERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGE 118
L K ++ LV A + +D G++ E
Sbjct: 69 VTDEERSALAKAQINLLVQQAVWQKVADDNGVKVTAADDAKE 110
>gi|209547141|ref|YP_002279059.1| hypothetical protein Rleg2_5108 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538385|gb|ACI58319.1| conserved hypothetical protein [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 315
Score = 37.1 bits (83), Expect = 9.3, Method: Composition-based stats.
Identities = 23/225 (10%), Positives = 61/225 (27%), Gaps = 24/225 (10%)
Query: 43 VVSVGRQKV--PFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLD 100
+ + R+K+ L + + R++ +D V+ L
Sbjct: 43 LATADREKIALTKDDVRQLAVTWLA----QGRSAPTPDELRTL------MDQKVTEEILF 92
Query: 101 QFIEDIGLEADHGRVWGEIARSPLFHG--------KDNKFSHDVFVSRLAREGINEKEYI 152
+ +GL+ D + +A+ F +N + + R R ++
Sbjct: 93 REAVSLGLDRDDEIIKRRLAQKMDFLAADLAKLEEPNNAQLEEWYAKRSDRFALSPHLSF 152
Query: 153 DHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAV 212
H + ++ A + + ++ N +
Sbjct: 153 RHLYFSFDKHGAAAREAADAALPSVAGKPADSPEVGSVADPFMFRNFYGDATPEQMAKEF 212
Query: 213 LTQWFEK----YKDNYRAPEYKRISYILFDVHEKEKKIEISNDEL 253
+ + +++ P + L V E + +E+
Sbjct: 213 GPDFAKALFTLKPGSWQGPIQSGYGWHLIWVDSIEPGRVPAFEEI 257
>gi|221217375|ref|ZP_03588846.1| conserved hypothetical protein [Borrelia burgdorferi 72a]
gi|221192653|gb|EEE18869.1| conserved hypothetical protein [Borrelia burgdorferi 72a]
Length = 500
Score = 37.1 bits (83), Expect = 9.3, Method: Composition-based stats.
Identities = 53/479 (11%), Positives = 122/479 (25%), Gaps = 16/479 (3%)
Query: 10 RTWVAKIFLVVLFVPFLIW------GLSDALFSVSGSSTVVSVGRQKVPF---SSFINSW 60
+ ++ + F G+ D S S Q + + S F
Sbjct: 20 KKVGMWGIFALILIVFGFIIAPLLPGIFDNAHSSGLK--FGSYKGQPIYYKKDSKFAKYV 77
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
+ S+ G N V ++ + +
Sbjct: 78 NYYSNLYSRLQGNAKNIN--TDYNAWYLAFMKYVEDVAFLDLVKKYNFYISKEMLNKNLL 135
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
+SP + FS + + + D + + +++ + + L D
Sbjct: 136 KSPEYLDSSGNFSSKRYN---KASDYQKVKIYDDMVENILFSNIKIFLNSNLIFPDSLFD 192
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
K R + Y+ L+ + S A K
Sbjct: 193 MIKNMSTVERHISYLSLSYQDFSNKEVISYAEKNLNLFKRLSLASIRFKNMNDARNAHDK 252
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
K +L ++ N + S + + + +KE + SL++G+ +
Sbjct: 253 LLNKTPFEELAKLYSDDIANFKGVVSLDKYYFDLDLNVEKKEDLNSIFSLREGEFSKPIK 312
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
+ S ++ + S + VI G ++
Sbjct: 313 IKNKNEYQIYKAFSNVHDFDKNSDRDISSVKNYIETYEPSVIEGYLENKLSDFLGDVKFS 372
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
++S K ++ + I S + L+E + S +
Sbjct: 373 SLSQVLEKYQLSLKEEIVNLSYNINVYPNTLKELVEFNNSKSFYDIIFGLKENSWSKPFV 432
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKL 479
A K V + ++ + L + L + + + K+ + +
Sbjct: 433 ANKKVYLFFLNSVKKRSNQLKDEIKNEKILDNFNIANSGLITDFLLNKKDFVNNFNESF 491
>gi|311244786|ref|XP_001925892.2| PREDICTED: centrosomal protein of 152 kDa-like [Sus scrofa]
Length = 1721
Score = 37.1 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 57/565 (10%), Positives = 151/565 (26%), Gaps = 19/565 (3%)
Query: 58 NSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWG 117
Q + Q V SE ++ L L +L + +G+
Sbjct: 450 QEVAQLQLQLHQAHKAHVMSENMNKA--LQEELKELKDEISLYESAAKLGILPSDSEGEL 507
Query: 118 EIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNL 177
I + + K ++ + + +++ + + G
Sbjct: 508 NIELTESYMDLGIKKANWKKSKVKSPVQQEDPGEELSKDEVIVKLKAEVQRLLGSNSVKR 567
Query: 178 LLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILF 237
L + ++ L + + + + + L
Sbjct: 568 HLVCQLQSDLKDCQKKIEDLQVEKDEKSNEVEFMKIDASEKPANQIWPGSLDVIVKDDLL 627
Query: 238 DVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFI 297
+ + + ++ N EL+ EK + + Q+V ++ EA ++ +
Sbjct: 628 RLKNEIQVLQQQNQELKETEEKLRNT-NQDLCNQMRQMVQDFDRDKQEAVDRCERTYQQH 686
Query: 298 QLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIK 357
A + S ++ + K+ + + + + + +
Sbjct: 687 HEAMKAQIRESLLAKHALEKQQLFEAYEGTRLQLRSDLDKVNKEMAAVQECYLEVCREKD 746
Query: 358 PSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPL 417
+ V+K+ Q +I + + E + + + + S +
Sbjct: 747 NLEAALRKTVEKEQEAQEKIKQELTQQFEKEWQSKLDQTIKAMKKKTSDYCSQTDQET-T 805
Query: 418 VDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDR 477
D K + K Q + + +I + + R
Sbjct: 806 TDVISKKEMAVLIEEQKRKIQQNSEQEKDMAVKGALEKLEVELELKYCEKIAKQVETAVR 865
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
+ + K+ K + + E S K + + I +
Sbjct: 866 NARHRWLEELPELAEYKSLVRAEQKKWEELQEQSVA-KRISFAVSEAKETWKSEIAIMKK 924
Query: 538 DNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPV--QEKDKFISYLT 595
+ G + ++ S + ++N VV + +K +EK + I L
Sbjct: 925 NAIP---GKELEEKIHSLQ----RELELKNEEVPVVVRAELAKARSEWNKEKQEEIHRL- 976
Query: 596 QMMNKDLLDSVIAYLKSQYSVTVHD 620
Q N+ + ++ +++
Sbjct: 977 QEQNEQDYRQFLDDHRN----KINE 997
>gi|224373789|ref|YP_002608161.1| putative periplasmic protein [Nautilia profundicola AmH]
gi|223588950|gb|ACM92686.1| putative periplasmic protein [Nautilia profundicola AmH]
Length = 270
Score = 37.1 bits (83), Expect = 9.4, Method: Composition-based stats.
Identities = 24/281 (8%), Positives = 69/281 (24%), Gaps = 24/281 (8%)
Query: 19 VVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSE 78
++ + +I +L S + +V +
Sbjct: 4 ILFVLSLII-----SLHSEVIDKIIATVNNIPITSYEVDKLASSLKIS------------ 46
Query: 79 RARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFV 138
K L L+ + I+ G++ D + + + +G ++ +
Sbjct: 47 -------KDKALQYLLDQKLIQSEIQKRGIDVDDFEIENAMEKIAKQNGLSLFEFKNILM 99
Query: 139 SRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLN 198
+ + + K D + L V + K + +V
Sbjct: 100 QKGQYQQLRNKIKDDLLKEKLFNQIVQTKLKISQDELKNFYENNKDQFKIFSTVQVTKYT 159
Query: 199 NRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYE 258
+ ++ + L K + + + + K + ++ A
Sbjct: 160 ANNKKSLNEIKKNPLANANVKTETKVYSYNELPLGLLFLFKQTKVGEFTPIINDGLAYSM 219
Query: 259 KNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299
+ E++ + + + F +L
Sbjct: 220 YYVARKDGSVYIPFEKVKNAIANKLAAQKREMILKDYFNKL 260
>gi|17549753|ref|NP_523093.1| signal peptide protein [Ralstonia solanacearum GMI1000]
gi|17432008|emb|CAD18685.1| putative ppic-type peptidyl-prolyl cis-trans isomerase signal
peptide protein [Ralstonia solanacearum GMI1000]
Length = 282
Score = 37.1 bits (83), Expect = 9.6, Method: Composition-based stats.
Identities = 5/69 (7%), Positives = 15/69 (21%), Gaps = 14/69 (20%)
Query: 37 VSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSG 96
+ V ++ + + G N + + + L++
Sbjct: 30 GLPPGVIALVNGTRITQEQLDRAI--------AQSGVQANP------QVAQALKQQLIAR 75
Query: 97 ATLDQFIED 105
Q
Sbjct: 76 ELFRQQAAK 84
>gi|32490767|ref|NP_871021.1| hypothetical protein WGLp018 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25165973|dbj|BAC24164.1| surA [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 452
Score = 37.1 bits (83), Expect = 9.6, Method: Composition-based stats.
Identities = 41/407 (10%), Positives = 101/407 (24%), Gaps = 13/407 (3%)
Query: 15 KIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFV 74
+ + F+ F ++ + +S + V ++ + S +
Sbjct: 34 ILLFKIFFISFCLFFNVNKSYSKEIDKIISIVNKKVILKSDVERIISDKNFNFENYFNS- 92
Query: 75 VNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHG---RVWGEI---ARSPLFHGK 128
S L +L+ L+ + + + V I L K
Sbjct: 93 ------ESESLKNLVLNKLIIDEVIKNKLNEYETFFSSDLLFNVNQNIFLEKYINLNKKK 146
Query: 129 DNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFE 188
+ +Y K+ + + N + Y
Sbjct: 147 KEITDKSILKLEPNNFLYWNIQYEKLKKKIYISEKEINYLSTILFLKNNNIKININHYIL 206
Query: 189 NRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEI 248
+ N I + +L K ++ + +I F K+
Sbjct: 207 ENPKIFSKKNIIEYKQIVNNLFKLLKNDKLSEKLIFKYLKNNKIVLGNFIGWNNLIKLPK 266
Query: 249 SNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLS 308
+ +K K+ + + L + D+ ++ K K + + E +
Sbjct: 267 YFRIFLFDLQKRKKIFGLFFLNKNLHLFQIKNIKYDKKIETEIKIKHILLIPSENRDENN 326
Query: 309 DISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVK 368
K I ++ S + D + G + + K
Sbjct: 327 TYFYLKQIKNQISSKEISFSNAAKKYSEDLYSALQGGEIDYDYKKIFDNFTLNKINKIKK 386
Query: 369 KDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDL 415
+I +R + VK ++ + + + ++
Sbjct: 387 GEITGPIRSLQGWHLVKLMNIKIVDNTYKIYKENAYKILFEKKLSEV 433
>gi|329113840|ref|ZP_08242611.1| Cell-binding factor 2 [Acetobacter pomorum DM001]
gi|326696850|gb|EGE48520.1| Cell-binding factor 2 [Acetobacter pomorum DM001]
Length = 260
Score = 37.1 bits (83), Expect = 9.7, Method: Composition-based stats.
Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 10/66 (15%)
Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQF 102
V +V +K+ S + + Q + + +++ L +
Sbjct: 2 VATVNGEKITLSDVQTAMISLPPQMRQ-----LPPNL-----IFPMLVNQLADQKAILIT 51
Query: 103 IEDIGL 108
+ GL
Sbjct: 52 AQKEGL 57
>gi|294618799|ref|ZP_06698326.1| foldase protein PrsA [Enterococcus faecium E1679]
gi|291594987|gb|EFF26337.1| foldase protein PrsA [Enterococcus faecium E1679]
Length = 336
Score = 37.1 bits (83), Expect = 9.7, Method: Composition-based stats.
Identities = 29/311 (9%), Positives = 82/311 (26%), Gaps = 37/311 (11%)
Query: 8 ASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMI 67
++ + + + S + + ++ + S F
Sbjct: 2 KKKSIILAATSALAVLTLAAC-------SGDTNKDIATMKGGTITVSDFY---------- 44
Query: 68 SQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHG 127
+ A+ ++ ++ ++ + G + +V E +
Sbjct: 45 ----------DEAKLKSSNQSLVQRMIIYKVFNN---KYGDKVTDKQVDAE-------YD 84
Query: 128 KDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYF 187
K K D F S+L G + Y ++ L+ + V ++
Sbjct: 85 KQAKSLGDTFESQLEAAGYTKDTYKEYIRNNLAFEAGLKAHVDITDDDLKTAWKSFHPEV 144
Query: 188 ENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIE 247
E + + + + ++ + + E +++
Sbjct: 145 EAQIIKLSSEDEAKDVKKSADDGDDFSKLAKDKSTDTETKEDGGKVKFDSTTTTIPAEVK 204
Query: 248 ISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSL 307
+ +L+ + +P E V K ++ K + +A E S
Sbjct: 205 EAAFKLKDGEISDVITTTNPTSYATEYYVVKMVKNQNKGNDMDKYKDQLKDIATETKLSD 264
Query: 308 SDISLGSFSKE 318
+ + +E
Sbjct: 265 NAFTTKVIGEE 275
>gi|255321569|ref|ZP_05362727.1| trimethylamiNe-N-oxide reductase 1 [Campylobacter showae RM3277]
gi|255301425|gb|EET80684.1| trimethylamiNe-N-oxide reductase 1 [Campylobacter showae RM3277]
Length = 270
Score = 37.1 bits (83), Expect = 9.7, Method: Composition-based stats.
Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 10/70 (14%)
Query: 44 VSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFI 103
+V + + G+ +++ KK++D ++ L
Sbjct: 23 ATVNGTAITDKDVAFTLAAMPGVTLEQLPKDT----------QKKVIDETINRKLLLDEA 72
Query: 104 EDIGLEADHG 113
+ GL+
Sbjct: 73 KKSGLDKSDE 82
>gi|254883668|ref|ZP_05256378.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA]
gi|319642194|ref|ZP_07996854.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
gi|254836461|gb|EET16770.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 4_3_47FAA]
gi|317386180|gb|EFV67099.1| peptidyl-prolyl cis-trans isomerase [Bacteroides sp. 3_1_40A]
Length = 446
Score = 37.1 bits (83), Expect = 9.7, Method: Composition-based stats.
Identities = 38/465 (8%), Positives = 117/465 (25%), Gaps = 45/465 (9%)
Query: 165 VGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNY 224
+ M G ++ + KR FE + + D
Sbjct: 18 LEMRAQGEVVLSIDGEPVKRSEFEYYFRKSSHRTPLSFLPSFINYKLKVRYAHDMGIDTL 77
Query: 225 RAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEAD 284
+ Y + E + Y + +++ + + + + +
Sbjct: 78 SVFRRQVDWYRGKLLRTYLADAEKEEQAARRLYLQGEQRLQANDWIKIAHISKYLSQN-- 135
Query: 285 EAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344
++ + Q+ + ++ Y D ++ ++ + PV
Sbjct: 136 --ASRQEEMRVRQQMDSVYEALWEGADFATLARRYSDD----EACKNVGGVLPWMPVNKN 189
Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEI 404
++ S + + F + + +E ++L +L
Sbjct: 190 MQEWIDKLESLERNKISAPFYSPMGIHIVKWIDRRQGVSFEEKREQLLNYLEKNG----- 244
Query: 405 SRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYM 464
+ + + + + E ++ LL + + +
Sbjct: 245 ---------NCTWKELSAEQKEELEFRVQELQDGLLAAYLSQKYQSGDEAWNEDDLERFF 295
Query: 465 WVQIKESIPARDRKLEEV---LTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIG 521
+ V + ++ S+ ++ + + + +
Sbjct: 296 KQHKSDYAWELPHYRGAVIHCKDRKTASAIKKQLKKKPVSQWKDILHTLTGDDASSKVRM 355
Query: 522 KNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV 581
+ + T I+++ + F + L Y K
Sbjct: 356 EAGVFQIGTNRYIDKLVFKCGSFQPEP-------------------DLPYTFVMGKKLKK 396
Query: 582 GPVQEKDKFISYLTQMMNKDLLDSVIAYLKSQYSVTVHDNLIQRY 626
GP + + + D+ + LK +Y V ++ +++
Sbjct: 397 GPES-YEDVREAVVKDYLTVYEDAWLKDLKQKYKVEINQEVLKTV 440
>gi|145491680|ref|XP_001431839.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398945|emb|CAK64441.1| unnamed protein product [Paramecium tetraurelia]
Length = 725
Score = 37.1 bits (83), Expect = 9.8, Method: Composition-based stats.
Identities = 32/446 (7%), Positives = 114/446 (25%), Gaps = 20/446 (4%)
Query: 45 SVGRQKVPFSSFINSWKQELGMISQKIGFVV----------NSERARSVGLDKKILDNLV 94
+ +Q++ + K+ L + + + + + +K++++ +
Sbjct: 277 KINKQELMTQEYDEQVKKVLANKDTQFNLKLLYHFNIKNLIDCQSIANNQENKELIEEIT 336
Query: 95 SGATLDQFIEDIGLEADHGRVWGEIARSPLF-------HGKDNKFSHDVFVSRLAREGIN 147
L I+D+ L+ + ++ + S + + E
Sbjct: 337 RFQLLYSQIDDLSLDTTEEHINQFTNEDLFILLVYLDEKIENLQDSQNKLPHLIMSEEEQ 396
Query: 148 EKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNNRHVPAIAD 207
+ K + L ++ K + ++ ++ +
Sbjct: 397 RYRNLKQSLKKQYQRLNSLSKNQFTFNKILEKEEIKVNRNSVENNSHLNTDDIQHGVVIH 456
Query: 208 PSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSP 267
+ + + + E+ ++ ++K +
Sbjct: 457 QPIEYEQDQCFTPIYQI-DDQSSKQNLLETVRSTFNNSTLQIYFEINKCLQQRQKKAWIY 515
Query: 268 EIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIPDVSLAD 327
+++ +K+ + + + ++ ++ I L S++ + I S
Sbjct: 516 MHIDHPNVIYFGEKKDNVFEGEVMQFQEVKKIKMISHYVHVKIQLDSWNIQDIEKKSSIY 575
Query: 328 SIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKED 387
F V S F E I ++ +K+
Sbjct: 576 YYIENRTPQKFQKVKEYSGQIKNGKNDG--EGKEKDFIENMVYIGQWRDGQMFNQGIKQL 633
Query: 388 YKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
+ + + K+ ++ + + + ++ V
Sbjct: 634 INTDQILQNAPYKWEGNFEKNKLHGQNIKTYLLNYNNKEVWLEGSYQDGQKSGLHVCYMK 693
Query: 448 DPLSKDHTVALPDGSYMWVQIKESIP 473
+++ S +V + +
Sbjct: 694 RGINQQVQPFTLYRSLFFVFLNKERE 719
>gi|114656901|ref|XP_001166117.1| PREDICTED: centrosomal protein 152kDa isoform 1 [Pan troglodytes]
Length = 1654
Score = 37.1 bits (83), Expect = 9.8, Method: Composition-based stats.
Identities = 44/544 (8%), Positives = 146/544 (26%), Gaps = 18/544 (3%)
Query: 80 ARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVS 139
A ++ L L +L + +G+ I + + K +
Sbjct: 464 ANMNKALQEELTELKDEISLYESAAKLGIHPSDSEGELNIELTESYVDLGIK--KVNWKK 521
Query: 140 RLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLDQAKRFYFENRSVDYIVLNN 199
+ E++ + +K + + +++ + + + + +
Sbjct: 522 SKVTSSVQEEDPNEELSKDEFILKLKAEVQRLLGSNSMKRHLVSQLQNDLKDCHKKIEDL 581
Query: 200 RHVPAIADPSNAVLTQWFEKYKDN--YRAPEYKRISYILFDVHEKEKKIEISNDELQAEY 257
V + N + + + + E ++ ++ E
Sbjct: 582 HQVKKDEKSIEVETKTDTSEKPKNQLWPESSTSDVVRDDILLLKNEIQVLQQQNQELKET 641
Query: 258 EKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSK 317
E + Q+V + EA ++ + A + S ++ + K
Sbjct: 642 EGKLRNTNQDLCNQMRQMVQDFDHDKQEAVDRCERTYQQHHEAMKTQIRESLLAKHALEK 701
Query: 318 EYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRI 377
+ + + + ++ + + + K Q
Sbjct: 702 QQLFEAYERTHLQLRSELDKLNKEMTAVQECYLEVCREK---DNLELTLRKTTEKEQQTQ 758
Query: 378 TKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKE 437
K EK+ + ++ + T + + ++ V + K + I ++
Sbjct: 759 EKIKEKLIQQLEKEWQSKLDQT-IKAMKKKTSDCGSQTDQVTTSDVISKKEMAIMIEEQK 817
Query: 438 QLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLEEVLTDVKKDWKTVKTAE 497
+ + ++ ++ + + + + ++ +
Sbjct: 818 CTIQQNLEQEKDIAIKGAMKKLEIELELKHCENITKQVEIAVQNARQRWLGELP-ELAEY 876
Query: 498 EVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFSGPV 557
+ +A Q + E + + + + +N G + ++ S
Sbjct: 877 QALVRAEQKKWKEQHEVSVNKRVSFAVSEAKEKWKSELENMRKNILPGKELEEKIHSLQ- 935
Query: 558 EMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISY-LTQMMNKDLLDSVIAYLKSQYSV 616
+ ++N VV + +K K+K Q N+ + ++
Sbjct: 936 ---RELELKNEEVPVVIRAELAKARSEWNKEKQEEIHRIQEQNEQDYRQFLDDHRN---- 988
Query: 617 TVHD 620
+++
Sbjct: 989 KINE 992
>gi|296123565|ref|YP_003631343.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
limnophilus DSM 3776]
gi|296015905|gb|ADG69144.1| PpiC-type peptidyl-prolyl cis-trans isomerase [Planctomyces
limnophilus DSM 3776]
Length = 415
Score = 37.1 bits (83), Expect = 9.9, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 39 GSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGF---VVNSERARSVGLDKKILDNLVS 95
G+ V V + S + + + L +K+ + E + L + L+
Sbjct: 98 GAQVVARVNGAPIFASEVLERYGEVLAQAREKLPPDKFNLLRENIIAQNLRAHVERQLIV 157
Query: 96 GA 97
Sbjct: 158 ER 159
>gi|27368132|gb|AAN87191.1| LipA [Bacillus cereus]
Length = 248
Score = 37.1 bits (83), Expect = 9.9, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 5/127 (3%)
Query: 478 KLEEVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRM 537
++V + K + K + A + V E G++F + K + Q +
Sbjct: 116 TEKDVKNNYKPEMKVSHILVKDEKTAKE-VKEKVNNGEDFAALAKQYSEDTGSKEQGGEI 174
Query: 538 DNENKFFG-YDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKV--GPVQEKDKFISYL 594
+ + V P++ Y + KVT+ K + K+K L
Sbjct: 175 SGFAPGQTVKEFEEAAYKLDAGQV-SDPVKTTYGYHIIKVTDKKELKPFDEVKEKIRKDL 233
Query: 595 TQMMNKD 601
Q +D
Sbjct: 234 EQQRLQD 240
>gi|254511296|ref|ZP_05123363.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium KLH11]
gi|221535007|gb|EEE37995.1| ppic-type ppiase domain protein [Rhodobacteraceae bacterium KLH11]
Length = 282
Score = 37.1 bits (83), Expect = 10.0, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 28/106 (26%), Gaps = 11/106 (10%)
Query: 21 LFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA 80
L + ++ A S+ V V ++ I + Q
Sbjct: 11 LALTAVLALPLAAETKPDASTVVARVNGDEITLGHVIATASALPAQYQQ----------L 60
Query: 81 RSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIARSPLFH 126
L IL+ LV L E++ A R+ E
Sbjct: 61 EDDVLFDFILEQLVQQHLLGLEQEELN-TASALRLENEARSLRAVQ 105
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.306 0.0905 0.193
Lambda K H
0.267 0.0281 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,810,120,949
Number of Sequences: 14124377
Number of extensions: 56808590
Number of successful extensions: 615980
Number of sequences better than 10.0: 7037
Number of HSP's better than 10.0 without gapping: 2828
Number of HSP's successfully gapped in prelim test: 4209
Number of HSP's that attempted gapping in prelim test: 600219
Number of HSP's gapped (non-prelim): 12923
length of query: 631
length of database: 4,842,793,630
effective HSP length: 146
effective length of query: 485
effective length of database: 2,780,634,588
effective search space: 1348607775180
effective search space used: 1348607775180
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 83 (37.1 bits)