RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] (631 letters) >gnl|CDD|182731 PRK10788, PRK10788, periplasmic folding chaperone; Provisional. Length = 623 Score = 130 bits (330), Expect = 9e-31 Identities = 100/396 (25%), Positives = 194/396 (48%), Gaps = 30/396 (7%) Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60 M++ +R A+ + V KI L ++ + F++ G+ L S + V Q++ + ++ Sbjct: 1 MMDNLRTAANSVVLKIILALIILSFILTGVGGYLIGGSNNY-AAKVNGQEISRAQLEQAF 59 Query: 61 KQELGMISQKIG--FVVNSERARSVG----LDKKILDNLVSGATLDQFIEDIGLEADHGR 114 + E + Q++G F SE A + G L +++L+ L+ A LDQ+ ++GL + Sbjct: 60 QSERNRLQQQLGDQF---SELAANEGYMKQLRQQVLNRLIDEALLDQYARELGLGISDEQ 116 Query: 115 VWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRP 174 V I +P F D KF ++ +++ L + G+ +Y + L+ ++ G Sbjct: 117 VKQAIFATPAFQ-TDGKFDNNKYLAILNQMGMTADQYAQALRQQLTTQQLINGVAG---- 171 Query: 175 SNLLL----DQAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYK 230 ++ +L D+ + R V ++ + A ++ + ++++ K+N+ APE Sbjct: 172 TDFMLPGETDELAALVAQQRVVREATIDVNALAAKQTVTDEEIKSYYDQNKNNFMAPEQF 231 Query: 231 RISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSL 290 ++SYI D ++KI +S+ ++QA Y+++++++ PE + + + EA L Sbjct: 232 KVSYIKLDAATMQQKITVSDADIQAYYDQHQDQFTQPERKRYSIIQTKTEAEAKAVLDEL 291 Query: 291 KKGKKFIQLAEEQGKSLSDIS------LGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHG 344 KKG F LA+E KS IS LG PD L ++ L +KG + VI Sbjct: 292 KKGADFATLAKE--KSTDIISARNGGDLGWLEPATTPD-ELKNA--GLKEKGQLSGVIKS 346 Query: 345 SFGYVIAHVSNIKPSFTVSFQEVKKDIANQMRITKA 380 S G++I + +I+P+ EV+ DIA +++ KA Sbjct: 347 SVGFLIVRLDDIQPAKVKPLSEVRDDIAAKVKQEKA 382 >gnl|CDD|178832 PRK00059, prsA, peptidylprolyl isomerase; Provisional. Length = 336 Score = 54.3 bits (131), Expect = 9e-08 Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 19/158 (12%) Query: 244 KKIEISNDELQAEYEKNKEKYF-SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE 302 K +++++ + Q Y +NK K+ P + ++ + EA + + L KG+ F ++A+E Sbjct: 170 KDVKVTDKDAQKYYNENKSKFTEKPNTMHLAHILVKTEDEAKKVKKRLDKGEDFAKVAKE 229 Query: 303 ---------QGKSLSDISLGS--FSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIA 351 +G L D+ + KE+ D +L K+G+ + + FGY I Sbjct: 230 VSQDPGSKDKGGDLGDVPYSDSGYDKEF------MDGAKAL-KEGEISAPVKTQFGYHII 282 Query: 352 HVSNIKPSFTVSFQEVKKDIANQMRITKASEKVKEDYK 389 K F VK+DI Q+ K SE K+ + Sbjct: 283 KAIKKKEYPVKPFDSVKEDIKKQLLQEKQSEVFKKKIE 320 >gnl|CDD|129009 smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1. Length = 241 Score = 32.4 bits (74), Expect = 0.34 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 8/87 (9%) Query: 186 YFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKK 245 Y + S Y N V A+ P + + + KDNY + L +V++K KK Sbjct: 143 YLGDLSTPYHANN---VTAVDSPGHRKFENFVQTRKDNYSLNT-EGEKKFLENVNKKAKK 198 Query: 246 IEISNDELQAEYEKNKEKYFSPEIRTV 272 + S+ + K+++ + + Sbjct: 199 LYYSHATMS----KSEKDWDYAAGEAL 221 >gnl|CDD|102061 PRK05922, PRK05922, type III secretion system ATPase; Validated. Length = 434 Score = 30.6 bits (69), Expect = 1.3 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Query: 266 SPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEE-QGKS--LSDISLGS 314 SP R Q +FP +A +AF +L KG++ +E GKS LS I+ GS Sbjct: 130 SPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 >gnl|CDD|178730 PLN03188, PLN03188, kinesin-12 family protein; Provisional. Length = 1320 Score = 29.5 bits (66), Expect = 2.4 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%) Query: 474 ARDRKLEEVLTDVKKDWKT--VKTAEE-----VSSKANQLVLEYSKEGKNFRDIGKNLGA 526 AR R+++E + DVKK V+ AE ++++ + L +E KE + RD K+L A Sbjct: 1128 ARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQA 1187 Query: 527 SLLTT 531 L T Sbjct: 1188 QLRDT 1192 >gnl|CDD|185290 PRK15392, PRK15392, putative fumarate hydratase; Provisional. Length = 550 Score = 28.4 bits (63), Expect = 5.7 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 88 KILDNL-VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREG 145 K DNL SG Q DI LE + F GK F+HD+ V RL R G Sbjct: 250 KYYDNLPTSGNEQGQAFRDIELEKVLLEASQQFGIGAQFGGK--YFAHDIRVIRLPRHG 306 >gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional. Length = 1136 Score = 28.2 bits (62), Expect = 6.0 Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 21/107 (19%) Query: 467 QIKESIPARDRKLEEVLTDVKKDWKTVKTAE------------EVSSKANQLVLEYSKEG 514 ++E I + +EE +DV++D + T E V++ ++ Y K Sbjct: 539 HVEEEISTAEEHIEEPASDVQQDSEAAPTIEIPDTLFYDILGVGVNADMKEISERYFKLA 598 Query: 515 KNFRDIGKNLGASLLTTNQINR-------MDNENKF--FGYDGISQV 552 +N+ ++ +IN +D + + FGYDGI V Sbjct: 599 ENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKGV 645 >gnl|CDD|131853 TIGR02806, clostrip, clostripain. Clostripain is a cysteine protease characterized from Clostridium histolyticum, and also known from Clostridium perfringens. It is a heterodimer processed from a single precursor polypeptide, specific for Arg-|-Xaa peptide bonds. The older term alpha-clostripain refers to the most active, most reduced form, rather than to the product of one of several different genes. Clostripain belongs to the peptidase family C11, or clostripain family (see pfam03415). Length = 476 Score = 28.5 bits (63), Expect = 6.1 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 13/90 (14%) Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQAEYEKNKEKYFSPEI 269 +A L +F++Y E + I Y FD+++ +KI S+ E+ + + + Sbjct: 316 HADLMHYFDEYD------EGEWIEYPYFDLYDLCEKINKSD-----EFNEKTKDLAKNAM 364 Query: 270 RTVEQLVFPNQKEADEAFQSLKKGKKFIQL 299 + +++L+ AD+ F+ K+GK I + Sbjct: 365 KKLDELIL--YSFADKDFKGFKEGKNGISI 392 >gnl|CDD|182715 PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional. Length = 413 Score = 27.8 bits (62), Expect = 8.7 Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 32/121 (26%) Query: 43 VVSVGRQKVPFSSFINSWKQELGMISQKIGFVVNSERA-RSVGLDKKILDNL-------- 93 V +V V S ++ Q + + +Q+ G + + R L++ I+DN+ Sbjct: 10 VAAVVNNGVVLESDVDGLMQSVKLNAQQAGQQLPDDATLRHQILERLIMDNIILQMAQKM 69 Query: 94 ---VSGATLDQFIEDIGLEADHGRVWGEIARSPLFHGKDNKFSHDVFVSRLAREGINEKE 150 +S LDQ I +I N + D SRLA +G+N Sbjct: 70 GVKISDEQLDQAIANIA--------------------AQNNMTLDQMRSRLAYDGLNYNT 109 Query: 151 Y 151 Y Sbjct: 110 Y 110 >gnl|CDD|131583 TIGR02531, yecD_yerC, TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence. Length = 88 Score = 27.8 bits (62), Expect = 9.2 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Query: 495 TAEEVSSKANQL-VLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVF 553 T E+ S A +L V + K+GK + DI GAS T +++ R N +G DG + V Sbjct: 30 TINEIQSLAQRLQVAKMLKQGKTYSDIEAETGASTATISRVKRCLN----YGNDGYNIVL 85 Query: 554 S 554 Sbjct: 86 E 86 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.317 0.135 0.381 Gapped Lambda K H 0.267 0.0681 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 10,313,630 Number of extensions: 691503 Number of successful extensions: 1605 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1597 Number of HSP's successfully gapped: 33 Length of query: 631 Length of database: 5,994,473 Length adjustment: 99 Effective length of query: 532 Effective length of database: 3,855,281 Effective search space: 2051009492 Effective search space used: 2051009492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.0 bits)