BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans
isomerase D signal peptide protein [Candidatus Liberibacter asiaticus
str. psy62]
(631 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 631
Score = 1286 bits (3327), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/631 (100%), Positives = 631/631 (100%)
Query: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW
Sbjct: 1 MLEIIRKASRTWVAKIFLVVLFVPFLIWGLSDALFSVSGSSTVVSVGRQKVPFSSFINSW 60
Query: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA
Sbjct: 61 KQELGMISQKIGFVVNSERARSVGLDKKILDNLVSGATLDQFIEDIGLEADHGRVWGEIA 120
Query: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD
Sbjct: 121 RSPLFHGKDNKFSHDVFVSRLAREGINEKEYIDHYTKMLSRTDVVGMFVGGMRPSNLLLD 180
Query: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH
Sbjct: 181 QAKRFYFENRSVDYIVLNNRHVPAIADPSNAVLTQWFEKYKDNYRAPEYKRISYILFDVH 240
Query: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA
Sbjct: 241 EKEKKIEISNDELQAEYEKNKEKYFSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLA 300
Query: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF
Sbjct: 301 EEQGKSLSDISLGSFSKEYIPDVSLADSIFSLAKKGDFTPVIHGSFGYVIAHVSNIKPSF 360
Query: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF
Sbjct: 361 TVSFQEVKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDF 420
Query: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE
Sbjct: 421 AGKDVKGKEVAAIPYKEQLLFRVFGKDDPLSKDHTVALPDGSYMWVQIKESIPARDRKLE 480
Query: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE
Sbjct: 481 EVLTDVKKDWKTVKTAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNE 540
Query: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK
Sbjct: 541 NKFFGYDGISQVFSGPVEMVKCFPIENGLSYVVFKVTNSKVGPVQEKDKFISYLTQMMNK 600
Query: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK
Sbjct: 601 DLLDSVIAYLKSQYSVTVHDNLIQRYLDGEK 631
>gi|254780900|ref|YP_003065313.1| homoserine dehydrogenase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 438
Score = 27.3 bits (59), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 341 VIHGSFGYVIAHVSNIKPSFTVSFQEVKK 369
+I+G+ Y+++H++N+ SF +E ++
Sbjct: 159 IINGTCNYILSHMNNLGLSFQDCLEEARR 187
>gi|254780745|ref|YP_003065158.1| OstA family protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 181
Score = 26.2 bits (56), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 15/76 (19%)
Query: 495 TAEEVSSKANQLVLEYSKEGKNFRDIGKNLGASLLTTNQINRMDNENKFFGYDGISQVFS 554
T E+ S +A+++ ++Y+ RD+ +N+INRMD E F G V +
Sbjct: 70 TQEDFSLQADKMTIDYNNTN---RDV----------SNKINRMDVERNIFIQSGEINVIA 116
Query: 555 --GPVEMVKCFPIENG 568
G V+ K + NG
Sbjct: 117 SNGYVDFQKRILVLNG 132
>gi|254780261|ref|YP_003064674.1| 50S ribosomal protein L3 [Candidatus Liberibacter asiaticus str.
psy62]
Length = 221
Score = 26.2 bits (56), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 21/57 (36%)
Query: 265 FSPEIRTVEQLVFPNQKEADEAFQSLKKGKKFIQLAEEQGKSLSDISLGSFSKEYIP 321
FSP TV QLV + F K F L G S+S S GS P
Sbjct: 98 FSPSYFTVGQLVDVTGMTIGKGFSGAMKRHNFGGLRATHGVSISHRSHGSTGCRQDP 154
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 26.2 bits (56), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 210 NAVLTQWFEKYKDNYRAPEYKRISYILFDVHEKEKKIEISNDELQ----AEYEKNK-EKY 264
+L WF N+R K+++ +L + H K I+ + +Q ++E N+ EKY
Sbjct: 187 TVILYVWFTIITSNWRVGLSKKMNNLLHECHAKVFDTLINFETIQYFNSEKFEINRLEKY 246
Query: 265 FS 266
S
Sbjct: 247 IS 248
>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 497
Score = 25.8 bits (55), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 403 EISRREKIVSIDLPLVDFAGKDVKGKEVAAIPYKEQLLFRVFGKD 447
E+ +R + V + GK + K+V AI K+Q+ V GKD
Sbjct: 255 EVMKRAHNAGCRVLSVGYQGKFIHLKKVCAIHNKQQVTISVEGKD 299
>gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 482
Score = 25.8 bits (55), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 128 KDNKFSHDVFVSRLAREGINEKEY 151
KD+ + D FV L+REG E+E+
Sbjct: 373 KDSHLTEDRFVLLLSREGKKEREF 396
>gi|254780554|ref|YP_003064967.1| Holliday junction resolvase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 169
Score = 25.4 bits (54), Expect = 2.8, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 468 IKESIPARDRKLEEVLTDVKKDWKTVKTAEE 498
+++S+ R +L E LTDV K+W+ + A E
Sbjct: 41 VRQSLAFRLCQLYEGLTDVIKNWRPEEAAVE 71
>gi|254780281|ref|YP_003064694.1| cytochrome-c oxidase assembly factor protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 201
Score = 24.3 bits (51), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 143 REGINEKEYIDHYTKMLSRTDVVGMFVG 170
+ G+ EK ++DH T +L D G VG
Sbjct: 149 KSGVEEKYFVDHTTALL-LFDTAGSIVG 175
>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 869
Score = 24.3 bits (51), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 367 VKKDIANQMRITKASEKVKEDYKRLEEFLALGTSMDEISRREKIVSIDLPLVDFAGKDVK 426
KKDI+ + TK E+++E+Y+ L A+ + E + I PL++ A K
Sbjct: 700 TKKDISLISKSTKFLERIEENYQNLSFNKAVA------NIHELVNVISKPLMEIAKKKSN 753
Query: 427 GKEVAAIPY 435
++ I Y
Sbjct: 754 ADRISTIRY 762
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,929
Number of Sequences: 1233
Number of extensions: 17911
Number of successful extensions: 52
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 16
length of query: 631
length of database: 328,796
effective HSP length: 80
effective length of query: 551
effective length of database: 230,156
effective search space: 126815956
effective search space used: 126815956
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 41 (20.4 bits)