Query gi|254781159|ref|YP_003065572.1| hypothetical protein CLIBASIA_05330 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 67
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Mon May 30 05:23:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781159.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06569 F0F1 ATP synthase sub 35.7 17 0.00043 18.7 1.1 26 15-42 3-28 (157)
2 PRK09174 F0F1 ATP synthase sub 32.0 22 0.00055 18.1 1.1 21 14-34 45-65 (204)
3 TIGR02815 agaS_fam putative su 30.7 8.8 0.00022 20.2 -1.1 17 21-37 120-136 (374)
4 COG4267 Predicted membrane pro 26.7 22 0.00057 18.0 0.5 13 23-35 69-81 (467)
5 PRK13454 F0F1 ATP synthase sub 24.8 32 0.00082 17.2 1.0 20 15-34 24-43 (181)
6 COG5630 ARG2 Acetylglutamate s 19.2 27 0.00069 17.6 -0.3 11 1-11 1-11 (495)
7 TIGR00951 2A43 Lysosomal Cysti 17.2 54 0.0014 15.9 0.8 12 18-29 16-27 (334)
8 cd06287 PBP1_LacI_like_8 Ligan 14.0 1.1E+02 0.0029 14.2 1.8 38 7-44 1-44 (269)
9 PRK10413 hydrogenase 2 accesso 13.9 1.3E+02 0.0032 14.0 2.8 28 35-63 45-72 (82)
10 pfam02326 YMF19 Plant ATP synt 13.0 1.1E+02 0.0027 14.4 1.4 19 16-34 3-21 (84)
No 1
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=35.70 E-value=17 Score=18.68 Aligned_cols=26 Identities=31% Similarity=0.513 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 4466666588998875106788489996
Q gi|254781159|r 15 PLQKISFLPQIFSLIITCGAQGKYCVLS 42 (67)
Q Consensus 15 plqkisflpqifsliitcgaqgkycvls 42 (67)
+|.--.|.+|||-|+||.|. -|.++|
T Consensus 3 Qld~~~~~sQifWL~itF~~--ly~~~s 28 (157)
T PRK06569 3 QFDIATYYSQIFWLIVTFGL--LYIFVY 28 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHH--HHHHHH
T ss_conf 99822408999999999999--999999
No 2
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=32.03 E-value=22 Score=18.11 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCC
Q ss_conf 844666665889988751067
Q gi|254781159|r 14 IPLQKISFLPQIFSLIITCGA 34 (67)
Q Consensus 14 iplqkisflpqifsliitcga 34 (67)
-||.--+|.+|||-|+|+.+.
T Consensus 45 Pqld~~t~~sQifWL~I~F~~ 65 (204)
T PRK09174 45 PPFDSTHYASQLLWLAITFGL 65 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
T ss_conf 999834508999999999999
No 3
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family; InterPro: IPR014180 Some members of this protein family are found in genic regions associated with N-acetyl-galactosamine and galactosamine utilisation and are suggested to be isomerases..
Probab=30.65 E-value=8.8 Score=20.24 Aligned_cols=17 Identities=35% Similarity=1.005 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHCCCCCC
Q ss_conf 65889988751067884
Q gi|254781159|r 21 FLPQIFSLIITCGAQGK 37 (67)
Q Consensus 21 flpqifsliitcgaqgk 37 (67)
+||..|.|.|||-.+|.
T Consensus 120 ~l~ecyHL~lTCN~~G~ 136 (374)
T TIGR02815 120 LLPECYHLVLTCNEEGA 136 (374)
T ss_pred CCCCCCCCCEECCCHHH
T ss_conf 15654203222380005
No 4
>COG4267 Predicted membrane protein [Function unknown]
Probab=26.74 E-value=22 Score=18.04 Aligned_cols=13 Identities=62% Similarity=0.549 Sum_probs=10.8
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 8899887510678
Q gi|254781159|r 23 PQIFSLIITCGAQ 35 (67)
Q Consensus 23 pqifsliitcgaq 35 (67)
--|||+|+|||-|
T Consensus 69 ~~ifS~IiTgg~q 81 (467)
T COG4267 69 CFIFSQIITGGFQ 81 (467)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999964388
No 5
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=24.84 E-value=32 Score=17.17 Aligned_cols=20 Identities=40% Similarity=0.389 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHHCCC
Q ss_conf 44666665889988751067
Q gi|254781159|r 15 PLQKISFLPQIFSLIITCGA 34 (67)
Q Consensus 15 plqkisflpqifsliitcga 34 (67)
+|+--.|.+|||-|+|+.+.
T Consensus 24 Qld~~~f~sQiFWl~i~F~i 43 (181)
T PRK13454 24 QLDFDTFPNQIFWLLVTLVA 43 (181)
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 99902407899999999999
No 6
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=19.24 E-value=27 Score=17.58 Aligned_cols=11 Identities=64% Similarity=1.174 Sum_probs=8.0
Q ss_pred CCCEEEEEEEE
Q ss_conf 95035753310
Q gi|254781159|r 1 MWRRVFAITLF 11 (67)
Q Consensus 1 mwrrvfaitlf 11 (67)
||||.|+-.|-
T Consensus 1 m~~~~~~~~l~ 11 (495)
T COG5630 1 MWRRIFAHELK 11 (495)
T ss_pred CCCHHHHHHHH
T ss_conf 97403334554
No 7
>TIGR00951 2A43 Lysosomal Cystine Transporter; InterPro: IPR005282 Most of the members of this family are integral membrane lysosomal proteins and they are thought to transport cystines out of lysosomes..
Probab=17.17 E-value=54 Score=15.94 Aligned_cols=12 Identities=50% Similarity=0.664 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 666658899887
Q gi|254781159|r 18 KISFLPQIFSLI 29 (67)
Q Consensus 18 kisflpqifsli 29 (67)
-|||+|||+.-.
T Consensus 16 sisfyPqi~~n~ 27 (334)
T TIGR00951 16 SISFYPQIIKNW 27 (334)
T ss_pred HHHHHHHHHHHH
T ss_conf 997401898874
No 8
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=14.03 E-value=1.1e+02 Score=14.19 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=26.7
Q ss_pred EEEEECCCCHH------HHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 53310148446------666658899887510678848999624
Q gi|254781159|r 7 AITLFSSIPLQ------KISFLPQIFSLIITCGAQGKYCVLSAN 44 (67)
Q Consensus 7 aitlfssiplq------kisflpqifsliitcgaqgkycvlsan 44 (67)
.|.+|||+|-- +.+|.+++-.-+-....+-.|-++-.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~FF~e~~~~ve~~A~~~gy~liL~~ 44 (269)
T cd06287 1 TIALASSMPFAVAGGPSRLGFMMEVAAAAAESALERGLALCLVP 44 (269)
T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 91021268722147976464299999999999998699899947
No 9
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=13.90 E-value=1.3e+02 Score=13.96 Aligned_cols=28 Identities=25% Similarity=0.591 Sum_probs=23.7
Q ss_pred CCCEEEEECCEEEEECCCCHHHHHHHHHH
Q ss_conf 88489996240342023410346546767
Q gi|254781159|r 35 QGKYCVLSANFQLNKLDNSKTAKENLDSF 63 (67)
Q Consensus 35 qgkycvlsanfqlnkldnsktakenldsf 63 (67)
-|.|-...+.|-+.++|. +.|+|.|+-+
T Consensus 45 vGDyVLVHvGfAi~~iDe-eeA~~tL~~l 72 (82)
T PRK10413 45 LGQWVLVHVGFAMSIIDE-DEAKATLDAL 72 (82)
T ss_pred CCCEEEEEECEEEEECCH-HHHHHHHHHH
T ss_conf 588999980532011699-9999999999
No 10
>pfam02326 YMF19 Plant ATP synthase F0. This family corresponds to subunit 8 (YMF19) of the F0 complex of plant and algae mitochondrial F-ATPases (EC:3.6.1.34).
Probab=12.98 E-value=1.1e+02 Score=14.37 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHCCC
Q ss_conf 4666665889988751067
Q gi|254781159|r 16 LQKISFLPQIFSLIITCGA 34 (67)
Q Consensus 16 lqkisflpqifsliitcga 34 (67)
|.+..|.+|+|=|+++-+.
T Consensus 3 LD~~t~~sQ~fWl~~~f~~ 21 (84)
T pfam02326 3 LDKFTYFTQFFWLCLFFFT 21 (84)
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 8614409999999999999
Done!