Query gi|254781159|ref|YP_003065572.1| hypothetical protein CLIBASIA_05330 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 67
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:40:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781159.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bbg_A Pollen allergen 5; prot 15.5 43 0.0018 15.3 1.0 11 31-41 10-20 (40)
2 1f94_A Bucandin; three-finger 14.4 47 0.002 15.1 1.0 22 28-53 13-34 (63)
3 2kmg_A KLCA; ARDB, spectroscop 9.1 65 0.0027 14.3 0.3 13 15-27 15-27 (142)
4 2z4t_A Beta-galactoside alpha- 9.0 48 0.002 15.0 -0.4 15 7-21 448-462 (514)
5 2wj9_A ARDB, intergenic-region 7.9 1E+02 0.0042 13.3 0.9 13 16-28 54-66 (181)
6 2ex0_A A2,3-sialyltransferase, 7.1 67 0.0028 14.3 -0.4 17 6-22 329-345 (399)
7 2z1c_A Hydrogenase expression/ 5.9 1.6E+02 0.0068 12.2 3.1 30 33-63 36-65 (75)
8 1w8x_N Protein P31, protein C, 4.9 1.6E+02 0.0067 12.2 0.5 16 30-45 80-97 (126)
9 3d3r_A Hydrogenase assembly ch 4.4 2E+02 0.0086 11.6 3.1 29 34-63 61-89 (103)
10 2fhw_B Relaxin 3 (prorelaxin H 4.4 2E+02 0.0086 11.6 1.0 9 25-33 15-23 (27)
No 1
>1bbg_A Pollen allergen 5; protein allergen, small highly disulfide bonded; NMR {Ambrosia trifida} SCOP: g.6.1.1 PDB: 2bbg_A 3bbg_A
Probab=15.50 E-value=43 Score=15.33 Aligned_cols=11 Identities=55% Similarity=1.322 Sum_probs=6.8
Q ss_pred HCCCCCCEEEE
Q ss_conf 10678848999
Q gi|254781159|r 31 TCGAQGKYCVL 41 (67)
Q Consensus 31 tcgaqgkycvl 41 (67)
.||.-||||.-
T Consensus 10 ncgkvgkyccs 20 (40)
T 1bbg_A 10 NCGKVGKYCCS 20 (40)
T ss_dssp TTSCTTSEEEC
T ss_pred CCCCCCCEECC
T ss_conf 56532656036
No 2
>1f94_A Bucandin; three-finger snake presynaptic neurotoxin; 0.97A {Bungarus candidus} SCOP: g.7.1.1 PDB: 1ijc_A
Probab=14.38 E-value=47 Score=15.12 Aligned_cols=22 Identities=45% Similarity=0.798 Sum_probs=16.9
Q ss_pred HHHHCCCCCCEEEEECCEEEEECCCC
Q ss_conf 87510678848999624034202341
Q gi|254781159|r 28 LIITCGAQGKYCVLSANFQLNKLDNS 53 (67)
Q Consensus 28 liitcgaqgkycvlsanfqlnkldns 53 (67)
|-|||.|..++|.- |+|+..|.
T Consensus 13 l~~tcsa~e~fc~k----~~n~is~~ 34 (63)
T 1f94_A 13 LKITCSAEETFCYK----WLNKISNE 34 (63)
T ss_dssp EEEECCTTCCEEEE----EEETTTCC
T ss_pred EEEEECHHHHHHHH----HHHHHHHH
T ss_conf 77664325678999----98656178
No 3
>2kmg_A KLCA; ARDB, spectroscopy, anti-restriction, plasmid, gene regulation; NMR {Bordetella pertussis}
Probab=9.09 E-value=65 Score=14.32 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 4466666588998
Q gi|254781159|r 15 PLQKISFLPQIFS 27 (67)
Q Consensus 15 plqkisflpqifs 27 (67)
.-|+++|+|+.|+
T Consensus 15 d~~Rl~F~P~~Fg 27 (142)
T 2kmg_A 15 EAQRLDFLPTYFG 27 (142)
T ss_dssp TTTHHHHHHHHTC
T ss_pred HHHHHHHHHHHHC
T ss_conf 1564524588709
No 4
>2z4t_A Beta-galactoside alpha-2,6-sialyltransferase; GT-B fold, immunoglobulin-like beta-sandwich fold, glycosyltransferase; HET: LBT C5P; 2.50A {Photobacterium SP}
Probab=9.05 E-value=48 Score=15.04 Aligned_cols=15 Identities=47% Similarity=0.806 Sum_probs=6.7
Q ss_pred EEEEECCCCHHHHHH
Q ss_conf 533101484466666
Q gi|254781159|r 7 AITLFSSIPLQKISF 21 (67)
Q Consensus 7 aitlfssiplqkisf 21 (67)
|-++|-|+|..||+|
T Consensus 448 aSSlYFSlP~eki~f 462 (514)
T 2z4t_A 448 ASSLYFTIPAEKIKF 462 (514)
T ss_dssp CCGGGGTSCGGGEEE
T ss_pred CCCEEEEEECCCCCE
T ss_conf 320589703210228
No 5
>2wj9_A ARDB, intergenic-region protein; antirestriction, hydrolase inhibitor; 1.62A {Escherichia coli}
Probab=7.92 E-value=1e+02 Score=13.29 Aligned_cols=13 Identities=62% Similarity=0.887 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 4666665889988
Q gi|254781159|r 16 LQKISFLPQIFSL 28 (67)
Q Consensus 16 lqkisflpqifsl 28 (67)
-|+++|+|+.|..
T Consensus 54 ~~Rl~FlP~~FG~ 66 (181)
T 2wj9_A 54 EQRISFWPQHFGL 66 (181)
T ss_dssp HHHTTHHHHHHTT
T ss_pred HHHHHHHHHHHCC
T ss_conf 7887658988575
No 6
>2ex0_A A2,3-sialyltransferase, A2,6-sialyltransferase; two rossman fold; 1.65A {Pasteurella multocida} SCOP: c.87.1.9 PDB: 2ihj_A* 2ihk_A* 2ihz_A* 2iiq_A* 2ilv_A* 2ii6_A* 2iib_A* 2ex1_A* 2c83_A 2iy7_A* 2c84_A* 2iy8_A*
Probab=7.06 E-value=67 Score=14.26 Aligned_cols=17 Identities=41% Similarity=0.643 Sum_probs=9.7
Q ss_pred EEEEEECCCCHHHHHHH
Q ss_conf 75331014844666665
Q gi|254781159|r 6 FAITLFSSIPLQKISFL 22 (67)
Q Consensus 6 faitlfssiplqkisfl 22 (67)
+|-++|-|+|..||+|+
T Consensus 329 ~aSSlyfSiP~ekin~i 345 (399)
T 2ex0_A 329 VASSLYFSLPKEKISHI 345 (399)
T ss_dssp ECCGGGGGSCGGGEEEE
T ss_pred CCCCEEEECCCCCEEEE
T ss_conf 23205897420000189
No 7
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal binding protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=5.93 E-value=1.6e+02 Score=12.19 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=24.4
Q ss_pred CCCCCEEEEECCEEEEECCCCHHHHHHHHHH
Q ss_conf 6788489996240342023410346546767
Q gi|254781159|r 33 GAQGKYCVLSANFQLNKLDNSKTAKENLDSF 63 (67)
Q Consensus 33 gaqgkycvlsanfqlnkldnsktakenldsf 63 (67)
-.-|.|-...+.|-+.|+|. +.|+|.++-|
T Consensus 36 ~~vGDyVLVH~G~Ai~~ide-eeA~e~l~~~ 65 (75)
T 2z1c_A 36 TKPGDWVIVHTGFAIEKLDE-KKAMEILEAW 65 (75)
T ss_dssp CCTTCEEEEETTEEEEEECH-HHHHHHHHHH
T ss_pred CCCCCEEEEEECCHHEECCH-HHHHHHHHHH
T ss_conf 99998999940701122799-9999999999
No 8
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=4.86 E-value=1.6e+02 Score=12.20 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=12.1
Q ss_pred HHC--CCCCCEEEEECCE
Q ss_conf 510--6788489996240
Q gi|254781159|r 30 ITC--GAQGKYCVLSANF 45 (67)
Q Consensus 30 itc--gaqgkycvlsanf 45 (67)
||| |.||-|-+|+.|.
T Consensus 80 It~~AG~QGYfPlL~~~~ 97 (126)
T 1w8x_N 80 IKCPAGKQGYFPLLVPGR 97 (126)
T ss_dssp EECCCCCCSSCCEEECCS
T ss_pred EECCCCCCCEEEEECCCH
T ss_conf 874577853214660666
No 9
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein structure initiative; 1.85A {Shewanella oneidensis mr-1} SCOP: b.40.14.1
Probab=4.44 E-value=2e+02 Score=11.63 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=0.0
Q ss_pred CCCCEEEEECCEEEEECCCCHHHHHHHHHH
Q ss_conf 788489996240342023410346546767
Q gi|254781159|r 34 AQGKYCVLSANFQLNKLDNSKTAKENLDSF 63 (67)
Q Consensus 34 aqgkycvlsanfqlnkldnsktakenldsf 63 (67)
+-|.|-+..+.|-+.|+|.. .|+|.++-|
T Consensus 61 ~vGDyVLVHaGfAIekIdee-eA~etl~~l 89 (103)
T 3d3r_A 61 AIGDYVLIHIGFVMNKIDRN-DALQSLELY 89 (103)
T ss_dssp CTTCEEEEEEEEEEEEECHH-HHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHCCHH-HHHHHHHHH
T ss_conf 89989999516676438999-999999999
No 10
>2fhw_B Relaxin 3 (prorelaxin H3) (insulin-like peptide INSL7) (insulin-like peptide 7); insulin/relaxin super-family fold, signaling protein; NMR {Synthetic} PDB: 2k1v_B*
Probab=4.41 E-value=2e+02 Score=11.61 Aligned_cols=9 Identities=56% Similarity=1.084 Sum_probs=0.0
Q ss_pred HHHHHHHCC
Q ss_conf 998875106
Q gi|254781159|r 25 IFSLIITCG 33 (67)
Q Consensus 25 ifsliitcg 33 (67)
|-..|.|||
T Consensus 15 iraviftcg 23 (27)
T 2fhw_B 15 IRAVIFTCG 23 (27)
T ss_dssp HHHHHHHHT
T ss_pred HHHHEEECC
T ss_conf 654046226
Done!