Query         gi|254781159|ref|YP_003065572.1| hypothetical protein CLIBASIA_05330 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 67
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:32:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781159.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1st6a6 a.24.9.1 (A:647-718) V  24.0      10 0.00074   17.4   0.6   33   19-66     23-55  (72)
  2 d1h6ga1 a.24.9.1 (A:377-507) a  16.5      23  0.0017   15.5   1.1   19   47-65     95-113 (131)
  3 d2bbga_ g.6.1.1 (A:) Amb V all  15.5      25  0.0018   15.3   1.0   11   31-41     10-20  (40)
  4 d1f94a_ g.7.1.1 (A:) Bucandin   14.4      27   0.002   15.1   1.0   22   28-53     13-34  (63)
  5 d3d3ra1 b.40.14.1 (A:1-76) Hyd   8.3      70  0.0051   12.9   3.1   29   34-63     40-68  (76)
  6 d1uxya1 d.145.1.2 (A:3-200) Ur   4.7 1.1E+02  0.0081   11.7   2.2   27   34-60    165-191 (198)
  7 d2ot2a1 b.40.14.1 (A:1-90) Hyd   4.3 1.2E+02  0.0088   11.6   3.2   29   34-63     43-71  (90)
  8 d1zo2a1 d.17.4.2 (A:10-126) Nu   4.2 1.2E+02  0.0089   11.5   2.2   16   33-48    102-117 (117)
  9 d2o8ra1 a.7.15.1 (A:4-112) Pol   3.9 1.3E+02  0.0096   11.4   0.7   18    5-22     19-37  (109)
 10 d2z1ca1 b.40.14.1 (A:2-72) Hyd   3.8 1.3E+02  0.0098   11.3   3.4   30   33-63     35-64  (71)

No 1  
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=24.00  E-value=10  Score=17.41  Aligned_cols=33  Identities=15%  Similarity=0.168  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCHHHHHHHHHHHHC
Q ss_conf             666588998875106788489996240342023410346546767631
Q gi|254781159|r   19 ISFLPQIFSLIITCGAQGKYCVLSANFQLNKLDNSKTAKENLDSFFAT   66 (67)
Q Consensus        19 isflpqifsliitcgaqgkycvlsanfqlnkldnsktakenldsffat   66 (67)
                      -+.-||+.+---++               -.--+||.|+||+|.|--.
T Consensus        23 e~L~PQVi~AariL---------------~~~P~sK~a~En~e~~~~~   55 (72)
T d1st6a6          23 RELTPQVVSAARIL---------------LRNPGNQAAYEHFETMKNQ   55 (72)
T ss_dssp             HHHHHHHHHHHHHT---------------TTSTTCHHHHHHHHHHHHH
T ss_pred             HHHCHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHH
T ss_conf             98788999999999---------------9888847799999999999


No 2  
>d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.55  E-value=23  Score=15.47  Aligned_cols=19  Identities=42%  Similarity=0.452  Sum_probs=14.2

Q ss_pred             EEECCCCHHHHHHHHHHHH
Q ss_conf             4202341034654676763
Q gi|254781159|r   47 LNKLDNSKTAKENLDSFFA   65 (67)
Q Consensus        47 lnkldnsktakenldsffa   65 (67)
                      |-.-.+||.|+||+|.|--
T Consensus        95 l~~~P~sk~a~en~e~~~~  113 (131)
T d1h6ga1          95 LAAKPQSKLAQENMDLFKE  113 (131)
T ss_dssp             HHHCTTCHHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHH
T ss_conf             9869885789999999999


No 3  
>d2bbga_ g.6.1.1 (A:) Amb V allergen {Giant ragweed (Ambrosia trifida), pollen [TaxId: 4214]}
Probab=15.50  E-value=25  Score=15.33  Aligned_cols=11  Identities=55%  Similarity=1.322  Sum_probs=6.8

Q ss_pred             HCCCCCCEEEE
Q ss_conf             10678848999
Q gi|254781159|r   31 TCGAQGKYCVL   41 (67)
Q Consensus        31 tcgaqgkycvl   41 (67)
                      .||.-||||.-
T Consensus        10 ncgkvgkyccs   20 (40)
T d2bbga_          10 NCGKVGKYCCS   20 (40)
T ss_dssp             TTSCTTSEEEC
T ss_pred             CCCCCCCEECC
T ss_conf             56532656036


No 4  
>d1f94a_ g.7.1.1 (A:) Bucandin {Malayan krait (Bungarus candidus) [TaxId: 92438]}
Probab=14.38  E-value=27  Score=15.12  Aligned_cols=22  Identities=45%  Similarity=0.798  Sum_probs=16.9

Q ss_pred             HHHHCCCCCCEEEEECCEEEEECCCC
Q ss_conf             87510678848999624034202341
Q gi|254781159|r   28 LIITCGAQGKYCVLSANFQLNKLDNS   53 (67)
Q Consensus        28 liitcgaqgkycvlsanfqlnkldns   53 (67)
                      |-|||.|..++|.-    |+|+..|.
T Consensus        13 l~~tcsa~e~fc~k----~~n~is~~   34 (63)
T d1f94a_          13 LKITCSAEETFCYK----WLNKISNE   34 (63)
T ss_dssp             EEEECCTTCCEEEE----EEETTTCC
T ss_pred             EEEEECHHHHHHHH----HHHHHHHH
T ss_conf             77664325678999----98656178


No 5  
>d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein HypC {Shewanella oneidensis [TaxId: 70863]}
Probab=8.33  E-value=70  Score=12.87  Aligned_cols=29  Identities=31%  Similarity=0.643  Sum_probs=24.1

Q ss_pred             CCCCEEEEECCEEEEECCCCHHHHHHHHHH
Q ss_conf             788489996240342023410346546767
Q gi|254781159|r   34 AQGKYCVLSANFQLNKLDNSKTAKENLDSF   63 (67)
Q Consensus        34 aqgkycvlsanfqlnkldnsktakenldsf   63 (67)
                      +-|.|-...+.|-+.|+|. +.|+|.++-|
T Consensus        40 ~vGDyVLVH~G~Ai~~id~-eeA~e~l~~l   68 (76)
T d3d3ra1          40 AIGDYVLIHIGFVMNKIDR-NDALQSLELY   68 (76)
T ss_dssp             CTTCEEEEEEEEEEEEECH-HHHHHHHHHH
T ss_pred             CCCCEEEEECCHHHHHCCH-HHHHHHHHHH
T ss_conf             8898999960435564899-9999999999


No 6  
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=4.72  E-value=1.1e+02  Score=11.75  Aligned_cols=27  Identities=15%  Similarity=0.239  Sum_probs=18.1

Q ss_pred             CCCCEEEEECCEEEEECCCCHHHHHHH
Q ss_conf             788489996240342023410346546
Q gi|254781159|r   34 AQGKYCVLSANFQLNKLDNSKTAKENL   60 (67)
Q Consensus        34 aqgkycvlsanfqlnkldnsktakenl   60 (67)
                      .++.+.++++.|+|.|-..+...+++|
T Consensus       165 ~~~~~iIl~a~f~L~~~~~~~~~y~~l  191 (198)
T d1uxya1         165 YQDRFAIVAVGLRLPKEWQPVLTYGDL  191 (198)
T ss_dssp             TTTTEEEEEEEEEEESSCCCCCCSGGG
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCHHHH
T ss_conf             789889999999978988766885898


No 7  
>d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein HypC {Escherichia coli [TaxId: 562]}
Probab=4.30  E-value=1.2e+02  Score=11.57  Aligned_cols=29  Identities=17%  Similarity=0.556  Sum_probs=23.4

Q ss_pred             CCCCEEEEECCEEEEECCCCHHHHHHHHHH
Q ss_conf             788489996240342023410346546767
Q gi|254781159|r   34 AQGKYCVLSANFQLNKLDNSKTAKENLDSF   63 (67)
Q Consensus        34 aqgkycvlsanfqlnkldnsktakenldsf   63 (67)
                      +-|.|-...+.|-+.|+|. ..|++.|+-+
T Consensus        43 ~vGDyVLVH~G~Ai~~ide-eeA~etl~ll   71 (90)
T d2ot2a1          43 RVGQWVLVHVGFAMSVINE-AEARDTLDAL   71 (90)
T ss_dssp             CTTCEEEEETTEEEEEECH-HHHHHHHHHH
T ss_pred             CCCCEEEEEHHHHHHHCCH-HHHHHHHHHH
T ss_conf             8788999952177775899-9999999999


No 8  
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]}
Probab=4.25  E-value=1.2e+02  Score=11.54  Aligned_cols=16  Identities=25%  Similarity=0.632  Sum_probs=11.4

Q ss_pred             CCCCCEEEEECCEEEE
Q ss_conf             6788489996240342
Q gi|254781159|r   33 GAQGKYCVLSANFQLN   48 (67)
Q Consensus        33 gaqgkycvlsanfqln   48 (67)
                      ...|+|+|.+-.|.||
T Consensus       102 ~~~~~~~I~nD~FRl~  117 (117)
T d1zo2a1         102 SGNGGFMIFNDLFRLN  117 (117)
T ss_dssp             CSSSCEEEEEEEEEEC
T ss_pred             CCCCCEEEEEEEEECC
T ss_conf             6999799995786667


No 9  
>d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.87  E-value=1.3e+02  Score=11.36  Aligned_cols=18  Identities=28%  Similarity=0.539  Sum_probs=6.5

Q ss_pred             EEEEEEECCCCH-HHHHHH
Q ss_conf             575331014844-666665
Q gi|254781159|r    5 VFAITLFSSIPL-QKISFL   22 (67)
Q Consensus         5 vfaitlfssipl-qkisfl   22 (67)
                      |..-..=.+.|| ..+.||
T Consensus        19 VL~~a~d~~~PllER~~Fl   37 (109)
T d2o8ra1          19 VLMEAADRTLPVYDRIKFL   37 (109)
T ss_dssp             HHHHHHCTTSCHHHHHHHH
T ss_pred             HHHHHCCCCCCHHHHHHHH
T ss_conf             9998708887799999999


No 10 
>d2z1ca1 b.40.14.1 (A:2-72) Hydrogenase expression/formation protein HypC {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=3.76  E-value=1.3e+02  Score=11.31  Aligned_cols=30  Identities=30%  Similarity=0.612  Sum_probs=23.6

Q ss_pred             CCCCCEEEEECCEEEEECCCCHHHHHHHHHH
Q ss_conf             6788489996240342023410346546767
Q gi|254781159|r   33 GAQGKYCVLSANFQLNKLDNSKTAKENLDSF   63 (67)
Q Consensus        33 gaqgkycvlsanfqlnkldnsktakenldsf   63 (67)
                      -..|.|-...+.|-+.|+|. ..|.|.++-+
T Consensus        35 ~~vGDyVLVh~G~Ai~~id~-eeA~e~l~~~   64 (71)
T d2z1ca1          35 TKPGDWVIVHTGFAIEKLDE-KKAMEILEAW   64 (71)
T ss_dssp             CCTTCEEEEETTEEEEEECH-HHHHHHHHHH
T ss_pred             CCCCCEEEEEECHHHHHCCH-HHHHHHHHHH
T ss_conf             99998999960324555899-9999999999


Done!