Query gi|254781159|ref|YP_003065572.1| hypothetical protein CLIBASIA_05330 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 67 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:32:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781159.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1st6a6 a.24.9.1 (A:647-718) V 24.0 10 0.00074 17.4 0.6 33 19-66 23-55 (72) 2 d1h6ga1 a.24.9.1 (A:377-507) a 16.5 23 0.0017 15.5 1.1 19 47-65 95-113 (131) 3 d2bbga_ g.6.1.1 (A:) Amb V all 15.5 25 0.0018 15.3 1.0 11 31-41 10-20 (40) 4 d1f94a_ g.7.1.1 (A:) Bucandin 14.4 27 0.002 15.1 1.0 22 28-53 13-34 (63) 5 d3d3ra1 b.40.14.1 (A:1-76) Hyd 8.3 70 0.0051 12.9 3.1 29 34-63 40-68 (76) 6 d1uxya1 d.145.1.2 (A:3-200) Ur 4.7 1.1E+02 0.0081 11.7 2.2 27 34-60 165-191 (198) 7 d2ot2a1 b.40.14.1 (A:1-90) Hyd 4.3 1.2E+02 0.0088 11.6 3.2 29 34-63 43-71 (90) 8 d1zo2a1 d.17.4.2 (A:10-126) Nu 4.2 1.2E+02 0.0089 11.5 2.2 16 33-48 102-117 (117) 9 d2o8ra1 a.7.15.1 (A:4-112) Pol 3.9 1.3E+02 0.0096 11.4 0.7 18 5-22 19-37 (109) 10 d2z1ca1 b.40.14.1 (A:2-72) Hyd 3.8 1.3E+02 0.0098 11.3 3.4 30 33-63 35-64 (71) No 1 >d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Probab=24.00 E-value=10 Score=17.41 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=21.3 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCHHHHHHHHHHHHC Q ss_conf 666588998875106788489996240342023410346546767631 Q gi|254781159|r 19 ISFLPQIFSLIITCGAQGKYCVLSANFQLNKLDNSKTAKENLDSFFAT 66 (67) Q Consensus 19 isflpqifsliitcgaqgkycvlsanfqlnkldnsktakenldsffat 66 (67) -+.-||+.+---++ -.--+||.|+||+|.|--. T Consensus 23 e~L~PQVi~AariL---------------~~~P~sK~a~En~e~~~~~ 55 (72) T d1st6a6 23 RELTPQVVSAARIL---------------LRNPGNQAAYEHFETMKNQ 55 (72) T ss_dssp HHHHHHHHHHHHHT---------------TTSTTCHHHHHHHHHHHHH T ss_pred HHHCHHHHHHHHHH---------------HHCCCCHHHHHHHHHHHHH T ss_conf 98788999999999---------------9888847799999999999 No 2 >d1h6ga1 a.24.9.1 (A:377-507) alpha-catenin {Human (Homo sapiens) [TaxId: 9606]} Probab=16.55 E-value=23 Score=15.47 Aligned_cols=19 Identities=42% Similarity=0.452 Sum_probs=14.2 Q ss_pred EEECCCCHHHHHHHHHHHH Q ss_conf 4202341034654676763 Q gi|254781159|r 47 LNKLDNSKTAKENLDSFFA 65 (67) Q Consensus 47 lnkldnsktakenldsffa 65 (67) |-.-.+||.|+||+|.|-- T Consensus 95 l~~~P~sk~a~en~e~~~~ 113 (131) T d1h6ga1 95 LAAKPQSKLAQENMDLFKE 113 (131) T ss_dssp HHHCTTCHHHHHHHHHHHH T ss_pred HHHCCCCHHHHHHHHHHHH T ss_conf 9869885789999999999 No 3 >d2bbga_ g.6.1.1 (A:) Amb V allergen {Giant ragweed (Ambrosia trifida), pollen [TaxId: 4214]} Probab=15.50 E-value=25 Score=15.33 Aligned_cols=11 Identities=55% Similarity=1.322 Sum_probs=6.8 Q ss_pred HCCCCCCEEEE Q ss_conf 10678848999 Q gi|254781159|r 31 TCGAQGKYCVL 41 (67) Q Consensus 31 tcgaqgkycvl 41 (67) .||.-||||.- T Consensus 10 ncgkvgkyccs 20 (40) T d2bbga_ 10 NCGKVGKYCCS 20 (40) T ss_dssp TTSCTTSEEEC T ss_pred CCCCCCCEECC T ss_conf 56532656036 No 4 >d1f94a_ g.7.1.1 (A:) Bucandin {Malayan krait (Bungarus candidus) [TaxId: 92438]} Probab=14.38 E-value=27 Score=15.12 Aligned_cols=22 Identities=45% Similarity=0.798 Sum_probs=16.9 Q ss_pred HHHHCCCCCCEEEEECCEEEEECCCC Q ss_conf 87510678848999624034202341 Q gi|254781159|r 28 LIITCGAQGKYCVLSANFQLNKLDNS 53 (67) Q Consensus 28 liitcgaqgkycvlsanfqlnkldns 53 (67) |-|||.|..++|.- |+|+..|. T Consensus 13 l~~tcsa~e~fc~k----~~n~is~~ 34 (63) T d1f94a_ 13 LKITCSAEETFCYK----WLNKISNE 34 (63) T ss_dssp EEEECCTTCCEEEE----EEETTTCC T ss_pred EEEEECHHHHHHHH----HHHHHHHH T ss_conf 77664325678999----98656178 No 5 >d3d3ra1 b.40.14.1 (A:1-76) Hydrogenase expression/formation protein HypC {Shewanella oneidensis [TaxId: 70863]} Probab=8.33 E-value=70 Score=12.87 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=24.1 Q ss_pred CCCCEEEEECCEEEEECCCCHHHHHHHHHH Q ss_conf 788489996240342023410346546767 Q gi|254781159|r 34 AQGKYCVLSANFQLNKLDNSKTAKENLDSF 63 (67) Q Consensus 34 aqgkycvlsanfqlnkldnsktakenldsf 63 (67) +-|.|-...+.|-+.|+|. +.|+|.++-| T Consensus 40 ~vGDyVLVH~G~Ai~~id~-eeA~e~l~~l 68 (76) T d3d3ra1 40 AIGDYVLIHIGFVMNKIDR-NDALQSLELY 68 (76) T ss_dssp CTTCEEEEEEEEEEEEECH-HHHHHHHHHH T ss_pred CCCCEEEEECCHHHHHCCH-HHHHHHHHHH T ss_conf 8898999960435564899-9999999999 No 6 >d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Probab=4.72 E-value=1.1e+02 Score=11.75 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=18.1 Q ss_pred CCCCEEEEECCEEEEECCCCHHHHHHH Q ss_conf 788489996240342023410346546 Q gi|254781159|r 34 AQGKYCVLSANFQLNKLDNSKTAKENL 60 (67) Q Consensus 34 aqgkycvlsanfqlnkldnsktakenl 60 (67) .++.+.++++.|+|.|-..+...+++| T Consensus 165 ~~~~~iIl~a~f~L~~~~~~~~~y~~l 191 (198) T d1uxya1 165 YQDRFAIVAVGLRLPKEWQPVLTYGDL 191 (198) T ss_dssp TTTTEEEEEEEEEEESSCCCCCCSGGG T ss_pred CCCCEEEEEEEEEECCCCCCCCCHHHH T ss_conf 789889999999978988766885898 No 7 >d2ot2a1 b.40.14.1 (A:1-90) Hydrogenase expression/formation protein HypC {Escherichia coli [TaxId: 562]} Probab=4.30 E-value=1.2e+02 Score=11.57 Aligned_cols=29 Identities=17% Similarity=0.556 Sum_probs=23.4 Q ss_pred CCCCEEEEECCEEEEECCCCHHHHHHHHHH Q ss_conf 788489996240342023410346546767 Q gi|254781159|r 34 AQGKYCVLSANFQLNKLDNSKTAKENLDSF 63 (67) Q Consensus 34 aqgkycvlsanfqlnkldnsktakenldsf 63 (67) +-|.|-...+.|-+.|+|. ..|++.|+-+ T Consensus 43 ~vGDyVLVH~G~Ai~~ide-eeA~etl~ll 71 (90) T d2ot2a1 43 RVGQWVLVHVGFAMSVINE-AEARDTLDAL 71 (90) T ss_dssp CTTCEEEEETTEEEEEECH-HHHHHHHHHH T ss_pred CCCCEEEEEHHHHHHHCCH-HHHHHHHHHH T ss_conf 8788999952177775899-9999999999 No 8 >d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2) {Cryptosporidium parvum [TaxId: 5807]} Probab=4.25 E-value=1.2e+02 Score=11.54 Aligned_cols=16 Identities=25% Similarity=0.632 Sum_probs=11.4 Q ss_pred CCCCCEEEEECCEEEE Q ss_conf 6788489996240342 Q gi|254781159|r 33 GAQGKYCVLSANFQLN 48 (67) Q Consensus 33 gaqgkycvlsanfqln 48 (67) ...|+|+|.+-.|.|| T Consensus 102 ~~~~~~~I~nD~FRl~ 117 (117) T d1zo2a1 102 SGNGGFMIFNDLFRLN 117 (117) T ss_dssp CSSSCEEEEEEEEEEC T ss_pred CCCCCEEEEEEEEECC T ss_conf 6999799995786667 No 9 >d2o8ra1 a.7.15.1 (A:4-112) Polyphosphate kinase, PPK {Porphyromonas gingivalis [TaxId: 837]} Probab=3.87 E-value=1.3e+02 Score=11.36 Aligned_cols=18 Identities=28% Similarity=0.539 Sum_probs=6.5 Q ss_pred EEEEEEECCCCH-HHHHHH Q ss_conf 575331014844-666665 Q gi|254781159|r 5 VFAITLFSSIPL-QKISFL 22 (67) Q Consensus 5 vfaitlfssipl-qkisfl 22 (67) |..-..=.+.|| ..+.|| T Consensus 19 VL~~a~d~~~PllER~~Fl 37 (109) T d2o8ra1 19 VLMEAADRTLPVYDRIKFL 37 (109) T ss_dssp HHHHHHCTTSCHHHHHHHH T ss_pred HHHHHCCCCCCHHHHHHHH T ss_conf 9998708887799999999 No 10 >d2z1ca1 b.40.14.1 (A:2-72) Hydrogenase expression/formation protein HypC {Thermococcus kodakaraensis [TaxId: 311400]} Probab=3.76 E-value=1.3e+02 Score=11.31 Aligned_cols=30 Identities=30% Similarity=0.612 Sum_probs=23.6 Q ss_pred CCCCCEEEEECCEEEEECCCCHHHHHHHHHH Q ss_conf 6788489996240342023410346546767 Q gi|254781159|r 33 GAQGKYCVLSANFQLNKLDNSKTAKENLDSF 63 (67) Q Consensus 33 gaqgkycvlsanfqlnkldnsktakenldsf 63 (67) -..|.|-...+.|-+.|+|. ..|.|.++-+ T Consensus 35 ~~vGDyVLVh~G~Ai~~id~-eeA~e~l~~~ 64 (71) T d2z1ca1 35 TKPGDWVIVHTGFAIEKLDE-KKAMEILEAW 64 (71) T ss_dssp CCTTCEEEEETTEEEEEECH-HHHHHHHHHH T ss_pred CCCCCEEEEEECHHHHHCCH-HHHHHHHHHH T ss_conf 99998999960324555899-9999999999 Done!