RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781159|ref|YP_003065572.1| hypothetical protein CLIBASIA_05330 [Candidatus Liberibacter asiaticus str. psy62] (67 letters) >1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase/DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A Length = 336 Score = 24.4 bits (52), Expect = 6.6 Identities = 6/18 (33%), Positives = 10/18 (55%) Query: 47 LNKLDNSKTAKENLDSFF 64 L KL K+ + L+ +F Sbjct: 319 LEKLKALKSTQATLERWF 336 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.328 0.137 0.414 Gapped Lambda K H 0.267 0.0489 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 489,167 Number of extensions: 14797 Number of successful extensions: 44 Number of sequences better than 10.0: 1 Number of HSP's gapped: 44 Number of HSP's successfully gapped: 1 Length of query: 67 Length of database: 5,693,230 Length adjustment: 37 Effective length of query: 30 Effective length of database: 4,796,202 Effective search space: 143886060 Effective search space used: 143886060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 50 (23.6 bits)