RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781159|ref|YP_003065572.1| hypothetical protein
CLIBASIA_05330 [Candidatus Liberibacter asiaticus str. psy62]
         (67 letters)



>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3
           turn-helix, hydrophobic wedge, 3' flap binding site,
           hydrolase/DNA complex; 2.00A {Archaeoglobus fulgidus}
           SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
          Length = 336

 Score = 24.4 bits (52), Expect = 6.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)

Query: 47  LNKLDNSKTAKENLDSFF 64
           L KL   K+ +  L+ +F
Sbjct: 319 LEKLKALKSTQATLERWF 336


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.328    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 489,167
Number of extensions: 14797
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 67
Length of database: 5,693,230
Length adjustment: 37
Effective length of query: 30
Effective length of database: 4,796,202
Effective search space: 143886060
Effective search space used: 143886060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.6 bits)