HHsearch alignment of GI: 254781160 and MMDB domain: 1v2x_A_21-176
>1v2x_A (A:21-176) TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus}
Probab=90.98 E-value=0.28 Score=28.55 Aligned_cols=138 Identities=13% Similarity=0.102 Sum_probs=72.5
Q ss_pred CCCEEEECC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 431354134-4541156777544445665655554202201122122335788999975123443433200000011233
Q gi|254781160|r 80 SDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 (245)
Q Consensus 80 ~~i~l~~~~-~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~ 158 (245)
|++.+++.- -.+..+-.+++-+--+|++.++.....-.....++.- +|......+....++++++..
T Consensus 1 p~l~ivl~~~~~~~NiG~i~Rta~a~G~~~i~i~~~~~~~~~~~~~s------------~g~~~~~~~~~~~~~~~~~~~ 68 (156)
T 1v2x_A 1 PDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFNETS------------GGSHKWVYLRVHPDLHEAFRF 68 (156)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCCCCSSC------------SSGGGTSEEEEESSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEC------------CCCEEEEECCCCCCCHHHHHH
T ss_conf 99799996798866399999999981986120234423430000100------------122144301124542236899
Q ss_pred CCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHHHH
Q ss_conf 322333212630001211022210036788359998888-8888899999995799558636887--4004489999999
Q gi|254781160|r 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKETLHSLPFVTPLSLGPR--ILRSDTAAVAAMA 235 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~l~~~~~~~~vsLG~~--ILR~ETA~i~als 235 (245)
.......+++-+... ....+......+++.+++|.| .|.|+++++.....= .+-+.+. -|=.-+|+-.++-
T Consensus 69 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~lv~G~E~~Gls~e~l~~~d~~v---~IP~~g~~~SLNvs~A~~I~ly 142 (156)
T 1v2x_A 69 LKERGFTVYATALRE---DARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAI---KIPMLGMVQSLNVSVAAAVILF 142 (156)
T ss_dssp HHHTTCEEEEECCCT---TSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEE---ECCCCSSCSCCCHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCC---CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEE---EECCCCCCCCCCHHHHHHHHHH
T ss_conf 986588531122222---3322101257888089966766646689997249289---9589998663329999999999