Query gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 245
No_of_seqs 113 out of 2755
Neff 7.5
Searched_HMMs 33803
Date Wed Jun 1 23:18:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781160.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1vhk_A Hypothetical protein Y 100.0 0 0 321.2 10.3 168 77-245 1-178 (191)
2 >1vhy_A Hypothetical protein H 100.0 1.4E-45 0 317.1 11.2 161 79-244 2-168 (180)
3 >3kw2_A Probable R-RNA methylt 100.0 1.4E-45 0 319.2 8.8 165 79-244 2-172 (183)
4 >1v6z_A Hypothetical protein T 100.0 6.6E-44 0 306.3 10.3 158 77-243 1-161 (161)
5 >2egv_A UPF0088 protein AQ_165 100.0 2.4E-43 0 302.6 11.8 156 78-240 2-162 (162)
6 >1z85_A Hypothetical protein T 100.0 1.5E-42 0 297.4 9.0 151 78-243 1-151 (152)
7 >1vhy_A Hypothetical protein H 99.6 1.6E-15 4.6E-20 121.5 8.3 73 3-75 1-74 (77)
8 >3kw2_A Probable R-RNA methylt 99.6 3.7E-15 1.1E-19 119.0 6.9 72 3-77 1-73 (74)
9 >1vhk_A Hypothetical protein Y 99.5 3.3E-14 9.6E-19 112.8 7.1 70 5-74 1-74 (77)
10 >1z85_A Hypothetical protein T 99.5 3.8E-14 1.1E-18 112.4 7.4 73 3-76 2-80 (82)
11 >2egv_A UPF0088 protein AQ_165 97.8 0.00012 3.6E-09 50.4 7.7 64 7-74 1-65 (67)
12 >1v6z_A Hypothetical protein T 97.1 0.0021 6.1E-08 42.5 6.9 60 6-71 2-61 (67)
13 >2qwv_A UPF0217 protein VC_A10 94.4 0.043 1.3E-06 33.9 3.6 109 125-240 87-204 (208)
14 >2qmm_A UPF0217 protein AF_105 94.2 0.13 3.9E-06 30.7 5.8 89 143-238 104-193 (197)
15 >1ipa_A RRMH, RNA 2'-O-ribose 91.9 0.4 1.2E-05 27.5 5.5 143 77-238 4-150 (166)
16 >1v2x_A TRNA (GM18) methyltran 91.0 0.28 8.3E-06 28.5 3.9 138 80-235 1-142 (156)
17 >2v3j_A Essential for mitotic 89.8 0.69 2E-05 26.0 5.1 83 155-242 167-250 (258)
18 >3dcm_X AdoMet, uncharacterize 87.5 0.058 1.7E-06 33.0 -1.7 132 78-209 14-155 (192)
19 >1k3r_A Conserved protein MT00 86.7 0.087 2.6E-06 31.9 -1.2 55 183-241 130-185 (192)
20 >2ha8_A TAR (HIV-1) RNA loop b 85.9 1.6 4.6E-05 23.7 4.9 144 78-237 23-171 (184)
21 >1to0_A Hypothetical UPF0247 p 84.9 2.8 8.2E-05 22.1 5.8 77 156-237 64-145 (167)
22 >1gz0_A Hypothetical tRNA/RRNA 83.0 0.89 2.6E-05 25.3 2.6 118 78-209 13-132 (164)
23 >1vh0_A Hypothetical UPF0247 p 81.9 3.4 9.9E-05 21.5 5.2 77 156-237 66-147 (161)
24 >3kty_A Probable methyltransfe 81.8 0.45 1.3E-05 27.2 0.8 147 78-235 7-166 (173)
25 >1o6d_A Hypothetical UPF0247 p 80.8 1.8 5.5E-05 23.2 3.6 77 156-237 59-139 (163)
26 >3e5y_A TRMH family RNA methyl 79.1 1.1 3.3E-05 24.6 2.0 116 80-209 4-121 (160)
27 >3ic6_A Putative methylase fam 78.5 2.9 8.7E-05 21.9 4.0 160 77-238 13-191 (201)
28 >3ilk_A Uncharacterized tRNA/R 77.7 1.9 5.5E-05 23.2 2.8 146 78-236 4-155 (174)
29 >1x7o_A Avirb, rRNA methyltran 77.1 3.4 0.0001 21.5 4.0 145 78-237 5-156 (169)
30 >1mxi_A YIBK, hypothetical tRN 75.4 5.9 0.00017 19.9 4.8 136 85-236 6-143 (160)
31 >3gyq_A RRNA (adenosine-2'-O-) 68.0 3.3 9.7E-05 21.6 2.2 118 80-210 6-125 (160)
32 >2i6d_A RNA methyltransferase, 67.8 4.4 0.00013 20.8 2.8 118 81-210 5-124 (159)
33 >1wbh_A KHG/KDPG aldolase; lya 53.2 4.7 0.00014 20.6 0.8 148 79-232 15-196 (214)
34 >1wgs_A MYST histone acetyltra 52.9 16 0.00048 17.1 3.6 28 35-62 10-37 (133)
35 >1mxs_A KDPG aldolase; 2-keto- 49.3 8.2 0.00024 19.0 1.5 152 80-237 26-211 (225)
36 >1o54_A SAM-dependent O-methyl 43.8 22 0.00066 16.2 3.6 26 35-60 17-42 (80)
37 >2e6z_A Transcription elongati 43.5 17 0.00051 16.9 2.5 32 38-69 8-40 (59)
38 >1ns5_A Hypothetical protein Y 41.6 24 0.00072 15.9 5.8 47 186-237 94-140 (155)
39 >1zjr_A TRNA (guanosine-2'-O-) 40.1 13 0.00038 17.7 1.4 115 82-210 3-119 (157)
40 >3hl2_A O-phosphoseryl-tRNA(SE 38.5 15 0.00045 17.3 1.6 34 195-228 41-81 (173)
41 >3bc8_A O-phosphoseryl-tRNA(SE 38.3 14 0.00043 17.4 1.4 33 195-227 23-62 (153)
42 >2qqr_A JMJC domain-containing 36.9 29 0.00085 15.5 4.5 27 38-64 6-32 (118)
43 >2yup_A Vinexin; sorbin and SH 35.2 30 0.0009 15.3 3.0 31 34-64 32-63 (90)
44 >2equ_A PHD finger protein 20- 35.1 31 0.0009 15.3 4.4 33 36-68 8-40 (74)
45 >1t3l_A Dihydropyridine-sensit 33.9 32 0.00094 15.2 3.8 33 36-68 62-96 (141)
46 >1k1z_A VAV; SH3, proto-oncoge 33.6 32 0.00095 15.1 3.9 30 35-64 34-65 (78)
47 >1i9g_A Hypothetical protein R 32.1 34 0.001 15.0 3.7 24 37-60 6-29 (67)
48 >3cw1_D Small nuclear ribonucl 32.0 34 0.001 15.0 4.0 39 33-71 7-45 (126)
49 >2pwy_A TRNA (adenine-N(1)-)-m 31.6 31 0.0009 15.3 2.2 23 38-60 4-26 (64)
50 >2qk4_A Trifunctional purine b 29.6 18 0.00054 16.8 0.8 29 191-222 91-119 (120)
51 >1pii_A N-(5'phosphoribosyl)an 29.3 38 0.0011 14.7 3.3 120 90-228 72-195 (212)
52 >1vq8_T 50S ribosomal protein 28.9 39 0.0011 14.6 3.6 48 22-69 7-56 (101)
53 >1twd_A Copper homeostasis pro 27.9 38 0.0011 14.7 2.1 122 90-223 71-201 (256)
54 >2eqj_A Metal-response element 27.6 41 0.0012 14.5 4.3 36 36-71 12-48 (66)
55 >1ujp_A Tryptophan synthase al 27.6 33 0.00097 15.1 1.8 123 94-229 108-238 (271)
56 >3db3_A E3 ubiquitin-protein l 27.4 41 0.0012 14.5 3.5 27 38-64 11-38 (89)
57 >2csu_A 457AA long hypothetica 25.7 43 0.0013 14.3 2.1 103 25-140 17-122 (126)
58 >1yad_A Regulatory protein TEN 25.0 15 0.00044 17.3 -0.4 36 192-228 165-200 (221)
59 >1j3t_A Intersectin 2; beta ba 24.9 45 0.0013 14.2 3.3 27 34-60 25-51 (74)
60 >1ng2_A Neutrophil cytosolic f 24.8 45 0.0013 14.2 3.0 27 34-60 26-53 (66)
61 >1ssf_A Transformation related 24.8 46 0.0013 14.2 4.0 37 36-72 7-44 (156)
62 >1uf2_K Structural protein P7; 24.7 36 0.0011 14.8 1.5 21 191-211 283-303 (506)
63 >1x6b_A RHO guanine exchange f 24.1 47 0.0014 14.1 3.3 31 34-64 32-62 (79)
64 >1g2b_A Spectrin alpha chain; 24.1 47 0.0014 14.1 3.8 24 35-58 37-61 (62)
65 >1zuy_A Myosin-5 isoform; SH3 23.8 47 0.0014 14.0 4.5 32 34-65 16-48 (58)
66 >3fok_A Uncharacterized protei 23.8 48 0.0014 14.0 6.2 144 92-236 128-293 (307)
67 >1ng2_A Neutrophil cytosolic f 23.7 48 0.0014 14.0 3.9 26 34-59 30-56 (127)
68 >3glk_A Acetyl-COA carboxylase 23.6 30 0.00088 15.4 0.9 27 93-119 111-137 (159)
69 >2do3_A Transcription elongati 23.5 48 0.0014 14.0 3.2 38 37-74 17-54 (69)
70 >2b5d_X Alpha-amylase; (beta/a 23.2 44 0.0013 14.2 1.8 25 190-214 178-202 (410)
71 >3d4r_A Domain of unknown func 22.6 50 0.0015 13.9 2.5 25 3-27 18-42 (98)
72 >1i4n_A Indole-3-glycerol phos 22.1 23 0.00068 16.1 0.1 46 192-238 182-227 (230)
73 >2yw2_A Phosphoribosylamine--g 22.0 23 0.00069 16.1 0.1 29 191-222 65-93 (97)
74 >1zsy_A Mitochondrial 2-enoyl 21.9 52 0.0015 13.8 2.1 32 28-59 6-37 (155)
75 >2ecz_A Sorbin and SH3 domain- 21.8 46 0.0014 14.1 1.6 32 34-65 22-54 (70)
76 >3bbo_W Ribosomal protein L24; 21.7 25 0.00075 15.8 0.3 28 36-63 67-94 (140)
77 >3bdl_A Staphylococcal nucleas 21.7 52 0.0015 13.8 4.7 34 38-71 3-36 (59)
78 >1ruw_A Myosin-3 isoform, MYO3 21.3 53 0.0016 13.7 4.3 33 35-67 19-52 (69)
79 >2e5p_A Protein PHF1, PHD fing 20.9 54 0.0016 13.7 4.8 38 36-73 8-46 (68)
80 >2fli_A Ribulose-phosphate 3-e 20.5 49 0.0015 13.9 1.6 46 192-238 171-216 (220)
81 >3cgm_A SLYD, peptidyl-prolyl 20.1 56 0.0017 13.6 4.1 31 34-64 17-47 (56)
82 >2e5q_A PHD finger protein 19; 20.1 56 0.0017 13.6 4.9 36 37-72 7-43 (63)
83 >3hbl_A Pyruvate carboxylase; 20.0 41 0.0012 14.4 1.1 42 92-142 64-105 (107)
No 1
>>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} (A:78-268)
Probab=100.00 E-value=0 Score=321.22 Aligned_cols=168 Identities=24% Similarity=0.288 Sum_probs=148.9
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 55443135413445411567775444456656555542022011------221223357889999751234434332000
Q gi|254781160|r 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPT 150 (245)
Q Consensus 77 ~~~~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~------~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~ 150 (245)
+++++|+|+++++|+++|||+|||+|||||++|+|+.|+||+.+ .+|.+||++|+++|||||||+++|+|..+.
T Consensus 1 Ep~~~i~L~~a~~K~~~~d~il~katELGV~~i~p~~serS~~~~~~~~~~~k~er~~~i~~eA~kQs~r~~lP~I~~~~ 80 (191)
T 1vhk_A 1 ELPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVXDVH 80 (191)
T ss_dssp CCSSEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCB
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 44402688750133311789997421055458998631455220133116778999999999999851887313321357
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCCCH----HHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf 0001123332233321263000121102----221003678835999888888888999999957995586368874004
Q gi|254781160|r 151 TLEFLLKNWDHNCQIVFADETCGSENSL----EKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 (245)
Q Consensus 151 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ 226 (245)
+|+++++...+.+.++++++........ .........+++.++||||||||++|+++|.++|| .+++||++|||+
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~IGPEGGfs~~E~~~l~~~gf-~~vsLG~rILR~ 159 (191)
T 1vhk_A 81 SFQQLLQRXQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDG-VTCGLGPRILRT 159 (191)
T ss_dssp CHHHHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHHHHHHTTC-EEECCCSSCCCT
T ss_pred CHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHH
T ss_conf 8999987432443399960222233314678887764247981899983898899999999998899-997789982467
Q ss_pred HHHHHHHHHHHHHHHCCCC
Q ss_conf 4899999999999847869
Q gi|254781160|r 227 DTAAVAAMALVQAICGDWY 245 (245)
Q Consensus 227 ETA~i~als~~~~~~g~~~ 245 (245)
|||+|+|+|++++++|||-
T Consensus 160 ETA~i~als~i~~~~~~~~ 178 (191)
T 1vhk_A 160 ETAPLYALSAISYQTELLR 178 (191)
T ss_dssp TTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 7599999999999888756
No 2
>>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} (A:78-257)
Probab=100.00 E-value=1.4e-45 Score=317.06 Aligned_cols=161 Identities=27% Similarity=0.389 Sum_probs=144.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 443135413445411567775444456656555542022011------22122335788999975123443433200000
Q gi|254781160|r 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTL 152 (245)
Q Consensus 79 ~~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~------~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l 152 (245)
+++++|+++++|+++|||+|||+|||||++|+|++|+||+++ .+|.+||++|+++|||||+|+++|+|.++.+|
T Consensus 2 ~~~i~l~~a~~K~~~~~~il~k~tELGv~~i~p~~s~rs~~~~~~~~~~~k~eR~~~i~~eA~kQs~r~~lp~i~~~~~l 81 (180)
T 1vhy_A 2 HLKIHLGQVISRGERXEFTIQKSVELGVNVITPLWSERCGVKLDAERXDKKIQQWQKIAIAACEQCGRNIVPEIRPLXKL 81 (180)
T ss_dssp SSCEEEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEH
T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
T ss_conf 11477776520655199999875243101589998501504353557777588999999999986078644420211001
Q ss_pred CCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 01123332233321263000121102221003678835999888888888999999957995586368874004489999
Q gi|254781160|r 153 EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 (245)
Q Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~ 232 (245)
+++++..+.+..++++++.... .... .....++++++||||||||++|+++|+++|| .+||||++|||+|||+++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~v~i~IGPEGGfs~~E~~~~~~~g~-~~vsLG~~ILR~ETA~i~ 156 (180)
T 1vhy_A 82 QDWCAENDGALKLNLHPRAHYS---IKTL-PTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLA 156 (180)
T ss_dssp HHHHTCCSSCEEEEECTTCCCB---GGGC-CCCCTTCEEEEECCTTCCCHHHHHHHHHTTC-EEEBCCSSCCCHHHHHHH
T ss_pred HHHHHCCCCCHHHHCCCCCCHH---HHHH-HCCCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHH
T ss_conf 4555303330010002100022---4443-1156674589984777889899999998798-886668980667879999
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999984786
Q gi|254781160|r 233 AMALVQAICGDW 244 (245)
Q Consensus 233 als~~~~~~g~~ 244 (245)
++|++++.+|||
T Consensus 157 als~~~~~~~~~ 168 (180)
T 1vhy_A 157 AISALQICFGDL 168 (180)
T ss_dssp HHHHHHHHHSGG
T ss_pred HHHHHHHHHCCC
T ss_conf 999999984865
No 3
>>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277} (A:75-257)
Probab=100.00 E-value=1.4e-45 Score=319.17 Aligned_cols=165 Identities=21% Similarity=0.339 Sum_probs=145.1
Q ss_pred CCCCEEEECCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 4431354134454-115677754444566565555420220112212233578899997512344343320000001123
Q gi|254781160|r 79 QSDVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK 157 (245)
Q Consensus 79 ~~~i~l~~~~~k~-~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~ 157 (245)
++.++|++++||+ ++|||+|||+|||||++|+|+.|+||+++.+|.+||++|+++|||||||+++|+|..|.+|.++++
T Consensus 2 p~~i~L~~~~pK~~~r~d~il~k~tELGV~~i~p~~s~rs~~~~~k~~r~~~ii~ea~kQs~r~~~P~I~~~~~~~~~l~ 81 (183)
T 3kw2_A 2 RDRITIAIAPTKQSERXEWXLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAXKQSLKASFPVIRVNIPIQTVIA 81 (183)
T ss_dssp CSCEEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHH
T ss_conf 75258998123441179999999881184489953035402444457789999999999737663867735658899997
Q ss_pred CCCCCCCCCCCCCHHCCCCCHHH-----HHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 33223332126300012110222-----1003678835999888888888999999957995586368874004489999
Q gi|254781160|r 158 NWDHNCQIVFADETCGSENSLEK-----LHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~ 232 (245)
.....+..+++++.......... .......++++++||||||||++|+++|+++|| .+|+||++|||+|||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~VGPEGGfs~~E~~~l~~~gf-~~vsLG~rILR~ETA~i~ 160 (183)
T 3kw2_A 82 DTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEGDFSPSEVESALLAGF-APVSLGESRLRTETAGLV 160 (183)
T ss_dssp HSCTTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTTCCCHHHHHHHHHHTC-EEECCCSSCCCHHHHHHH
T ss_pred HCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHH
T ss_conf 3710253220101331012344310242124236882799988998999999999998799-898679981567859999
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999984786
Q gi|254781160|r 233 AMALVQAICGDW 244 (245)
Q Consensus 233 als~~~~~~g~~ 244 (245)
++|++++++|||
T Consensus 161 als~~~~~~~~~ 172 (183)
T 3kw2_A 161 ACQWIHTLQACY 172 (183)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
T ss_conf 999999998664
No 4
>>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} (A:68-228)
Probab=100.00 E-value=6.6e-44 Score=306.29 Aligned_cols=158 Identities=29% Similarity=0.438 Sum_probs=136.8
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 55443135413445411567775444456656555542022011---221223357889999751234434332000000
Q gi|254781160|r 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 (245)
Q Consensus 77 ~~~~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~---~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~ 153 (245)
+++++++|+++++|+++|||+|||+|||||++|+|+.|+||+++ .++.+||++|+++|||||||+++|+|+++.+|+
T Consensus 1 ep~~~i~l~~a~~k~~~~~~il~ka~ElGv~~i~p~~s~rs~~k~~~~~k~~r~~~i~~ea~kQs~r~~~P~I~~~~~l~ 80 (161)
T 1v6z_A 1 EVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEXGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLK 80 (161)
T ss_dssp SCSSCEEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGG
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHEEEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 34520489972034204788987654013138998731420111234321206789999999865887687014666889
Q ss_pred CCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 11233322333212630001211022210036788359998888888889999999579955863688740044899999
Q gi|254781160|r 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 (245)
Q Consensus 154 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~a 233 (245)
++++.. .+++++++... .........++++++||||||||++|+++|+++|| .+|+||++|||+|||++++
T Consensus 81 ~~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~i~i~IGPEGGfs~~Ei~~l~~~g~-~~v~LG~~ILR~ETA~i~~ 151 (161)
T 1v6z_A 81 AVPQVA---QGLVAHVGATA-----RVREVLDPEKPLALAVGPEGGFAEEEVALLEARGF-TPVSLGRRILRAETAALAL 151 (161)
T ss_dssp GCCCCS---SEEEECTTCCC-----CHHHHCCTTSCEEEEECCTTCCCHHHHHHHHHHTE-EEECCCSSCCCHHHHHHHH
T ss_pred HHHHHC---CCCCCCCCCCC-----CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHH
T ss_conf 974320---00001123343-----32211145675079978987889999999997898-8977899812677499999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999998478
Q gi|254781160|r 234 MALVQAICGD 243 (245)
Q Consensus 234 ls~~~~~~g~ 243 (245)
+|++++.+|+
T Consensus 152 ls~~~~~~gr 161 (161)
T 1v6z_A 152 LALCTAGEGR 161 (161)
T ss_dssp HHHHTGGGTC
T ss_pred HHHHHHHHCC
T ss_conf 9999997586
No 5
>>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A* (A:68-229)
Probab=100.00 E-value=2.4e-43 Score=302.63 Aligned_cols=156 Identities=20% Similarity=0.285 Sum_probs=140.8
Q ss_pred CCCCCEEEECCCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 544313541344541-1567775444456656555542022011----22122335788999975123443433200000
Q gi|254781160|r 78 KQSDVQYIFSPIKTN-RLDYMIQKSVEMGMGAIRPVITRYTQNT----HYNMDRVRTYTISAAEQCDILTLPFIYPPTTL 152 (245)
Q Consensus 78 ~~~~i~l~~~~~k~~-~~~~ilqk~tELGV~~I~p~~~~rs~~~----~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l 152 (245)
|+++++|+++++|++ +|||+|||+|||||++|+|+.|+||+++ .++.+||++|+++|||||||+++|+|+.+.+|
T Consensus 2 P~~~i~l~~a~~k~~k~~~~il~katELGv~~i~p~~t~rs~~~~~~~~~k~~r~~~i~~eA~kQs~r~~~p~i~~~~~l 81 (162)
T 2egv_A 2 PPKDITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRL 81 (162)
T ss_dssp CSSEEEEEEECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCCEECCCEEG
T ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHEEEEEEEECCCCCHHEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
T ss_conf 35321027853311557999997631155448721520011000045666799999999999853386311102344569
Q ss_pred CCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 01123332233321263000121102221003678835999888888888999999957995586368874004489999
Q gi|254781160|r 153 EFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 (245)
Q Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~ 232 (245)
+++++.......++++++.... .......++++++||||||||++|++.|.++|| ++++||++|||+|||+++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~i~IGPEGGfs~~Ei~~~~~~g~-~~v~LG~~ILR~ETA~i~ 154 (162)
T 2egv_A 82 SDLIPESEENIILDNFYEGVKP------KDVNLEAKTYSVVVGPEGGFSKRESQILREKGF-KSVLLEPYTLRTETAVVS 154 (162)
T ss_dssp GGCCCCSSEEEEECTTSCCBCG------GGSCTTCSEEEEEECCTTCCCHHHHHHHHHTTC-EEECCSSSCCCHHHHHHH
T ss_pred HHHHHHCCCHHEEHHHHHHCCC------CCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHH
T ss_conf 9998633400100123220243------100224666099993899999999999998798-897669982527759999
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q gi|254781160|r 233 AMALVQAI 240 (245)
Q Consensus 233 als~~~~~ 240 (245)
++|+++++
T Consensus 155 als~i~~l 162 (162)
T 2egv_A 155 IVSILMNF 162 (162)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHCC
T ss_conf 99998409
No 6
>>1z85_A Hypothetical protein TM1380; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.12A {Thermotoga maritima MSB8} (A:83-234)
Probab=100.00 E-value=1.5e-42 Score=297.40 Aligned_cols=151 Identities=25% Similarity=0.360 Sum_probs=132.7
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 54431354134454115677754444566565555420220112212233578899997512344343320000001123
Q gi|254781160|r 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK 157 (245)
Q Consensus 78 ~~~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~ 157 (245)
|+++++|+++++|+++|||+|||+|||||++|+|++|+||+++ .|.+||++|+++|||||||+++|+|+.+.+|++++.
T Consensus 1 P~~~i~l~~a~~K~~~~~~il~katELGv~~i~p~~t~rs~~~-~k~~r~~~i~~ea~kQs~r~~~P~i~~~~~l~~~~~ 79 (152)
T 1z85_A 1 PTEKLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHE-ISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEFSGN 79 (152)
T ss_dssp CSSCEEEEEECCCHHHHHHHHHHHHHTTCSEEEEECCTTCCCC-CCHHHHHHHHHHHHHHHTCSBCCEEEECCSCCCCSE
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHEECCCEEEEEECCCCCHH-HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC
T ss_conf 7753247875043201688876755021127998752111201-214778999999887339855888810103244565
Q ss_pred CCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 33223332126300012110222100367883599988888888899999995799558636887400448999999999
Q gi|254781160|r 158 NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 (245)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~ 237 (245)
. +++++.. ..........++++++||||||||++|+++|++ || .++|||++|||+|||+++++|++
T Consensus 80 ~-------~~~~~~~-----~~~~~~~~~~~~i~i~IGPEGGfs~~Ei~~~~~-g~-~~vsLg~~ILR~ETA~i~als~~ 145 (152)
T 1z85_A 80 V-------ITLDLDA-----SQNLLDANLEGSITVVVGPEGGFSEKERELLRS-ST-TIVSLGKKILRFETAAILTVGYI 145 (152)
T ss_dssp E-------EEECC--------CCCSSSCCCSSEEEEECCTTCCCHHHHHHHHH-HS-EEC------CCHHHHHHHHHHHH
T ss_pred C-------EEECCCH-----HHCCCHHCCCCCEEEEECCCCCCCHHHHHHHHC-CC-EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 2-------4542001-----210000204785799989978999999999984-99-89867998233561999999999
Q ss_pred HHHHCC
Q ss_conf 998478
Q gi|254781160|r 238 QAICGD 243 (245)
Q Consensus 238 ~~~~g~ 243 (245)
++++||
T Consensus 146 ~~~~~~ 151 (152)
T 1z85_A 146 ALKKQK 151 (152)
T ss_dssp HHHTTC
T ss_pred HHHHCC
T ss_conf 998446
No 7
>>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} (A:1-77)
Probab=99.62 E-value=1.6e-15 Score=121.45 Aligned_cols=73 Identities=25% Similarity=0.344 Sum_probs=65.2
Q ss_pred CCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECC
Q ss_conf 76778777408544788889987798759987035789888999977998798753023555-23899754135
Q gi|254781160|r 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRS 75 (245)
Q Consensus 3 ~~~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~ 75 (245)
.+|+|||||+++++..++.+.|+++++||+.||||+++||.|.++||+|..|.|+|++++++ +.+.+......
T Consensus 1 ~~M~m~rff~~~~~~~~~~i~l~~e~~hHl~~VLR~~~Gd~i~l~dg~g~~~~a~I~~i~~~~~~~~i~~~~~~ 74 (77)
T 1vhy_A 1 XSLRIPRIYHPISLENQTQCYLSEDAANHVARVLRXTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELA 74 (77)
T ss_dssp ----CCEEECSSCCTTCSEEECCHHHHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEECCCEEC
T ss_pred CCCCCCEEEECCCCCCCCEEECCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCCCHHHHHCCEEC
T ss_conf 98778579868757899989818899889997083899999999979898899999872554111110001001
No 8
>>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277} (A:1-74)
Probab=99.58 E-value=3.7e-15 Score=119.01 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=62.4
Q ss_pred CCCCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCCC
Q ss_conf 76778777408544788889987798759987035789888999977998798753023555-2389975413555
Q gi|254781160|r 3 IHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQT 77 (245)
Q Consensus 3 ~~~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~~ 77 (245)
.+|+|||||+++ .++.+.|+++++||+.+|||+++||.|.|+||+|..|.|+|++++++ +.+.+.+....+.
T Consensus 1 ~~M~m~r~fi~~---~~~~i~l~~~~~hHl~~VlR~k~Gd~i~l~dg~g~~~~a~I~~i~~~~~~~~i~e~~~~~~ 73 (74)
T 3kw2_A 1 XSLSLPLFYAPD---IEQSDRLPDDEAGHILRVLRXQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQK 73 (74)
T ss_dssp ----CCEEECTT---TTTCSBCCHHHHHHHHTTSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECCC
T ss_pred CCCCCCEEECCC---CCCCCEECHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCC
T ss_conf 985555788799---8766446989998998547589999899997989889999999128769998620334458
No 9
>>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} (A:1-77)
Probab=99.51 E-value=3.3e-14 Score=112.84 Aligned_cols=70 Identities=21% Similarity=0.308 Sum_probs=60.6
Q ss_pred CCCCEEEECCC---CCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEEC
Q ss_conf 77877740854---4788889987798759987035789888999977998798753023555-2389975413
Q gi|254781160|r 5 SHLKRLFVDFP---LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR 74 (245)
Q Consensus 5 ~~m~R~f~~~~---l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~ 74 (245)
..|||||++.. +..+..+.|+++++||+.||||+++||.|.|+||+|+.|.|+|+.++|+ +.+.+.....
T Consensus 1 ~sM~Rff~~~~~~~~~~~~~i~l~~~~~hHl~~VlR~~~Gd~i~l~dg~g~~~~a~I~~i~~~~~~~~i~e~~~ 74 (77)
T 1vhk_A 1 XSLQRYFIELTKQQIEEAPTFSITGEEVHHIVNVXRXNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTN 74 (77)
T ss_dssp ---CEEECSSCHHHHHSSSSEEEESHHHHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEEECC
T ss_pred CCCCEEEECCCHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCHHHHHHCC
T ss_conf 99748996788567356997996889988999807689999999993899889999999615663022233213
No 10
>>1z85_A Hypothetical protein TM1380; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.12A {Thermotoga maritima MSB8} (A:1-82)
Probab=99.51 E-value=3.8e-14 Score=112.42 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=63.3
Q ss_pred CCCCCCEEEECCC-----CCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCC-CCEEEEEEEECCC
Q ss_conf 7677877740854-----478888998779875998703578988899997799879875302355-5238997541355
Q gi|254781160|r 3 IHSHLKRLFVDFP-----LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQSRSQ 76 (245)
Q Consensus 3 ~~~~m~R~f~~~~-----l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k-~~~~~i~~~~~~~ 76 (245)
..|+|||||++.+ +..++.+.|+++++||+ ||||+|+||.|.|+||+|..|.|+|+++++ ++.+.+......+
T Consensus 2 ~~M~m~rff~~~~r~f~~~~~~~~i~l~~~~~Hh~-~VLRlk~Gd~i~l~dg~g~~~~a~I~~i~~~~~~~~i~~~~~~~ 80 (82)
T 1z85_A 2 GSDKIHHHHHHXPHLFYGTAQNGEVIFDEREAHHX-RVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKE 80 (82)
T ss_dssp ------------CCCEECEEETTEEEECHHHHHHH-HHTTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECC
T ss_pred CCCCCCCCCCCCCEEEECCCCCCEEEECHHHHHHH-EECCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCHHHHHHHH
T ss_conf 86544512167871504678899699687885687-13658999999999898989999986511565321213331120
No 11
>>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A* (A:1-67)
Probab=97.78 E-value=0.00012 Score=50.45 Aligned_cols=64 Identities=8% Similarity=0.103 Sum_probs=52.4
Q ss_pred CCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEEC
Q ss_conf 8777408544788889987798759987035789888999977998798753023555-2389975413
Q gi|254781160|r 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSR 74 (245)
Q Consensus 7 m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~ 74 (245)
||-||-++ ..++.+.|++++..|+ .|.|.+.|+++.++. .|..|.|++...+|. +.+++.++..
T Consensus 1 mhif~~e~--rrG~lf~i~geElKH~-~vRR~~~gekvgviw-EgklylCkv~~~~Kk~a~CeI~EEie 65 (67)
T 2egv_A 1 MHVFYSEE--RRGNLLILREGEVKHF-RVRRIEKDEEFGVIH-EGKIYVCKVRREDKREISCEIVEELE 65 (67)
T ss_dssp CCEEECSC--EETTEEEEETHHHHHH-HHTTCCTTCCEEEEE-TTEEEEEEEEEECSSEEEEEEEEECC
T ss_pred CCEEECCC--CCCCEEEECCCCEEEE-EEEECCCCCEEEEEE-CCEEEEEEEEEECCCEEEEEEECCCC
T ss_conf 97893788--8799799763212789-998438999999993-99699999999206559998401233
No 12
>>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} (A:1-67)
Probab=97.09 E-value=0.0021 Score=42.45 Aligned_cols=60 Identities=27% Similarity=0.393 Sum_probs=46.0
Q ss_pred CCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEE
Q ss_conf 787774085447888899877987599870357898889999779987987530235552389975
Q gi|254781160|r 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 (245)
Q Consensus 6 ~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~ 71 (245)
+-||-|.+.- +-.|.-.+.|||..|||.++||.+.+|||+ .++.|++.+.+......+.+
T Consensus 2 RPHRAf~p~l-----~~~l~LrE~~HL~dVLRAr~GD~~TVFDg~-~E~~A~V~~~~p~~~~~~~e 61 (67)
T 1v6z_A 2 RPHRAFSPGL-----TGVLPLRETRHLVEVLRARVGDRFTVFDGE-REALAEVVDLGPPLRYRVLE 61 (67)
T ss_dssp CCCEEECGGG-----CSBCCHHHHHHHHTTSCCCTTCEEEEECSS-CEEEEEEEECCSSCEEEEEE
T ss_pred CCCEEECCCC-----EEECCHHHHHHHHHCCCCCCCCEEEEEECC-CCEEEEECCCCCCEEEEEEE
T ss_conf 9864708998-----675898997899962828999999999799-87788975256621246543
No 13
>>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} (A:)
Probab=94.39 E-value=0.043 Score=33.90 Aligned_cols=109 Identities=15% Similarity=0.181 Sum_probs=71.9
Q ss_pred HH-HHHHHHHHHHHHCC-------CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEEC
Q ss_conf 23-35788999975123-------44343320-00000112333223332126300012110222100367883599988
Q gi|254781160|r 125 DR-VRTYTISAAEQCDI-------LTLPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195 (245)
Q Consensus 125 eR-~~~ii~eA~eQsgr-------~~lP~i~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IG 195 (245)
|| .-..++.|.+.+.. -..|-|.. -.+|+++++.......+++.++...+ +-......+.+++.|
T Consensus 87 Ers~a~~I~kAL~~~~~~~~~~~~e~~pGi~V~~~~fe~ll~~l~e~~~ly~L~e~G~~------i~~~~~~~n~~FvLg 160 (208)
T 2qwv_A 87 EAALIALLVKALDASVGXGKEQTRVVQPGLTVRTISFEALLGELAEHHSLYXXDKKGDS------IRDIKIGPNPCFILT 160 (208)
T ss_dssp HHHHHHHHHHHHHHTTTCCTTCEEEEETTEEEECCCHHHHHHHHHTTSEEEEEEEEEEE------TTTSCCCSSEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEECCCHHHHHHHHHCCCCEEEECCCCCC------HHHCCCCCCCEEEEE
T ss_conf 89999999998636578887513674799899488899999998558978998899995------310668899879960
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 888888899999995799558636887400448999999999998
Q gi|254781160|r 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 (245)
Q Consensus 196 PEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~~ 240 (245)
--=||+++|.++++..+. ..+||||..|=|+.+.+++.-.+--.
T Consensus 161 DH~~~~~ee~~~L~~~~~-~~iSlGP~~l~AshcI~~vhn~LDr~ 204 (208)
T 2qwv_A 161 DHIPXPKKSGNSXKRLGV-EKISLGPKXLFASQCVTLIHNEIDHQ 204 (208)
T ss_dssp C----------CTTTTTC-EEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCC-CEEEECCHHHHHHHHHHHHHHHHHCC
T ss_conf 899989789999986388-23754607888758999999987123
No 14
>>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} (A:)
Probab=94.19 E-value=0.13 Score=30.69 Aligned_cols=89 Identities=21% Similarity=0.294 Sum_probs=62.0
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 343320-0000011233322333212630001211022210036788359998888888889999999579955863688
Q gi|254781160|r 143 LPFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP 221 (245)
Q Consensus 143 lP~i~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~ 221 (245)
.|-|.. -.+|+++++.......+++.++...+ +-.....++.+++.|--=||+++|.++++..|. ..+||||
T Consensus 104 ~pGi~v~~~~fe~ll~~l~~~~~l~~L~e~G~~------i~~~~~~~~p~FvLgDH~~~~~ee~~~L~~~~a-~~iSlGp 176 (197)
T 2qmm_A 104 HSGVYVSRKGLEELIEELSEKYSIIYLKEDGVD------ISNAQLPPNPLFVIGDHEGLTEEQEKVVERYAA-LKLSLSP 176 (197)
T ss_dssp ETTEEEECCCHHHHHHHHHHHSEEEEEEEEEEE------GGGSCCCSSEEEEEECTTCCCHHHHHHHHTTCS-EEEECCS
T ss_pred CCCEEEECCCHHHHHHHHHCCCCEEEECCCCCC------CCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-CEEECCC
T ss_conf 489899188899999998657968998788986------233346899869971899988678887764277-1156254
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 74004489999999999
Q gi|254781160|r 222 RILRSDTAAVAAMALVQ 238 (245)
Q Consensus 222 ~ILR~ETA~i~als~~~ 238 (245)
..|=++.+.+++--.+.
T Consensus 177 ~~l~A~hcI~~vhn~LD 193 (197)
T 2qmm_A 177 LSLLAEQCVVIAHHHLD 193 (197)
T ss_dssp SCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 21352366969999886
No 15
>>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} (A:109-274)
Probab=91.94 E-value=0.4 Score=27.52 Aligned_cols=143 Identities=15% Similarity=0.100 Sum_probs=77.2
Q ss_pred CCCCCCEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 5544313541-344541156777544445665655554202201122122335788999975123443433200000011
Q gi|254781160|r 77 TKQSDVQYIF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL 155 (245)
Q Consensus 77 ~~~~~i~l~~-~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~ 155 (245)
.+..++.+++ .+-.+..+-.+++-+--.|++.++...+....... +..++ .|-.+...+....++..+
T Consensus 4 ~~~~~~~ivl~~~~~p~NiG~i~Rta~afG~~~i~~~~~~~~~~~~---------~~r~s--~ga~~~~~~~~~~~~~~~ 72 (166)
T 1ipa_A 4 PSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQ---------VIRNS--TGVVFSLRTLAASESEVL 72 (166)
T ss_dssp CCTTCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESCCCTTCHH---------HHHHT--TTGGGTSCEEEECHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCH---------HEECC--CCEEEEEEEEECCHHHHH
T ss_conf 4689789999679786179999999997399789962883334521---------10124--430689999961578888
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEECCCCC--CCHHHHHHH
Q ss_conf 2333223332126300012110222100367883599988888-8888999999957995586368874--004489999
Q gi|254781160|r 156 LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFVTPLSLGPRI--LRSDTAAVA 232 (245)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~~vsLG~~I--LR~ETA~i~ 232 (245)
.+.......++.. ..... .........+.+.+++|+|+ |.|+++++.....- .+.+.+.+ |=.-.|+-.
T Consensus 73 ~~~~~~~~~i~~~-~~~~~----~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v---~IP~~g~~~SLNva~A~~I 144 (166)
T 1ipa_A 73 DWIKQHNLPLVAT-TPHAE----ALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQV---RIPMQGQADSLNVSVSAAL 144 (166)
T ss_dssp HHHHHTTCCEEEE-CTTCS----SBGGGSCCCSSEEEEECCTTSCCCHHHHHHCSEEE---BCCCCSSCCCCCHHHHHHH
T ss_pred HHHHHCCEEEECC-CCCCC----CCCEEECCCCCCEEEECCCCCCCCHHHHHHCCEEE---EECCCCCCCCHHHHHHHHH
T ss_conf 8765123001011-13565----32201024777389986777888999997489799---9779999970049999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781160|r 233 AMALVQ 238 (245)
Q Consensus 233 als~~~ 238 (245)
++.-+.
T Consensus 145 ~lye~~ 150 (166)
T 1ipa_A 145 LLYEAL 150 (166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 16
>>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} (A:21-176)
Probab=90.98 E-value=0.28 Score=28.55 Aligned_cols=138 Identities=13% Similarity=0.102 Sum_probs=72.5
Q ss_pred CCCEEEECC-CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 431354134-4541156777544445665655554202201122122335788999975123443433200000011233
Q gi|254781160|r 80 SDVQYIFSP-IKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 (245)
Q Consensus 80 ~~i~l~~~~-~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~ 158 (245)
|++.+++.- -.+..+-.+++-+--+|++.++.....-.....++.- +|......+....++++++..
T Consensus 1 p~l~ivl~~~~~~~NiG~i~Rta~a~G~~~i~i~~~~~~~~~~~~~s------------~g~~~~~~~~~~~~~~~~~~~ 68 (156)
T 1v2x_A 1 PDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPTFNETS------------GGSHKWVYLRVHPDLHEAFRF 68 (156)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCCCCSSC------------SSGGGTSEEEEESSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEC------------CCCEEEEECCCCCCCHHHHHH
T ss_conf 99799996798866399999999981986120234423430000100------------122144301124542236899
Q ss_pred CCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHHHH
Q ss_conf 322333212630001211022210036788359998888-8888899999995799558636887--4004489999999
Q gi|254781160|r 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKETLHSLPFVTPLSLGPR--ILRSDTAAVAAMA 235 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~l~~~~~~~~vsLG~~--ILR~ETA~i~als 235 (245)
.......+++-+... ....+......+++.+++|.| .|.|+++++.....= .+-+.+. -|=.-+|+-.++-
T Consensus 69 ~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~lv~G~E~~Gls~e~l~~~d~~v---~IP~~g~~~SLNvs~A~~I~ly 142 (156)
T 1v2x_A 69 LKERGFTVYATALRE---DARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAI---KIPMLGMVQSLNVSVAAAVILF 142 (156)
T ss_dssp HHHTTCEEEEECCCT---TSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEE---ECCCCSSCSCCCHHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCC---CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCEE---EECCCCCCCCCCHHHHHHHHHH
T ss_conf 986588531122222---3322101257888089966766646689997249289---9589998663329999999999
No 17
>>2v3j_A Essential for mitotic growth 1; EMG1, rRNA processing, nuclear protein, ribonucleoprotein, ribosome biogenesis; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=89.84 E-value=0.69 Score=26.02 Aligned_cols=83 Identities=8% Similarity=0.004 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCC-EEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 12333223332126300012110222100367883-59998888888889999999579955863688740044899999
Q gi|254781160|r 155 LLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPN-VAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 (245)
Q Consensus 155 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~a 233 (245)
.++..+.++.++..++......+.+....+....+ +.+++|.-+|+++...+. .. ..+||++..|-+++|++..
T Consensus 167 i~~~l~~~~~~I~Ls~~Gk~~~s~efa~~l~~~~~i~~~IGG~~~G~~~~~~~~----ad-~~iSLS~~tLsh~lv~~~L 241 (258)
T 2v3j_A 167 ITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAXARGKDNFADEY----VD-EKVGLSNYPLSASVACSKF 241 (258)
T ss_dssp GGGTSCSSEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSCCTTTTTTT----CS-CEEBSCSSCCCHHHHHHHH
T ss_pred HHHHCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCC----CE-EEEEECCCCHHHHHHHHHH
T ss_conf 654077898799989987635799999872436986999933558985521000----40-5899608766899999999
Q ss_pred HHHHHHHHC
Q ss_conf 999999847
Q gi|254781160|r 234 MALVQAICG 242 (245)
Q Consensus 234 ls~~~~~~g 242 (245)
+..+=-.||
T Consensus 242 ~eqlyRa~~ 250 (258)
T 2v3j_A 242 CHGAEDAWN 250 (258)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHC
T ss_conf 999999858
No 18
>>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} (X:)
Probab=87.52 E-value=0.058 Score=33.04 Aligned_cols=132 Identities=10% Similarity=-0.075 Sum_probs=62.1
Q ss_pred CCCCCEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCC
Q ss_conf 544313541-344541156777544445665655554202201122122335788999975123--44343320000001
Q gi|254781160|r 78 KQSDVQYIF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI--LTLPFIYPPTTLEF 154 (245)
Q Consensus 78 ~~~~i~l~~-~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr--~~lP~i~~~~~l~~ 154 (245)
+..++.+++ .+-.+..+-.|++-+.-+|++.++..-.................-.++...+.. ..+|......++.+
T Consensus 14 ~~~~~~ivl~~i~~p~NiG~IiRta~~~G~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~~~~~~~~~~~~~~~ 93 (192)
T 3dcm_X 14 IKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLED 93 (192)
T ss_dssp EECTTCSEECCCCCHHHHHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHH
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHCEEEECCHHH
T ss_conf 12766748997145888999999999769967999767600788887787607756888846468988501488434776
Q ss_pred CCCCCCCCCCCCCCCCH---HC---CCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHH
Q ss_conf 12333223332126300---01---2110222100367883599988888-88889999999
Q gi|254781160|r 155 LLKNWDHNCQIVFADET---CG---SENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLH 209 (245)
Q Consensus 155 ~l~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~ 209 (245)
+++.........+.-.. .. ..............+.+.+++|+|+ |.++++.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gl~~e~~~~~~ 155 (192)
T 3dcm_X 94 VLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGWGLPDEILEISD 155 (192)
T ss_dssp HHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEECCTTCCCHHHHTTCS
T ss_pred HHHHHHHHHCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 42125553132468752256767875246889987532488599982577787999998621
No 19
>>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} (A:1-84,A:161-268)
Probab=86.71 E-value=0.087 Score=31.86 Aligned_cols=55 Identities=18% Similarity=0.333 Sum_probs=37.4
Q ss_pred CCCCCCCEEEEEC-CCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0367883599988-8888888999999957995586368874004489999999999984
Q gi|254781160|r 183 AIAHIPNVAILIG-PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 (245)
Q Consensus 183 ~~~~~~~i~i~IG-PEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~~~ 241 (245)
.....+.++++.| |+.|..+.--+..- +++ | .-|.+..|||-|....|+.++.+.
T Consensus 130 ~~~~~~~~lvvFGgP~~Gl~~~lfD~~i--Nt~-P-~QgsrTIRTEEAi~itLa~L~~~~ 185 (192)
T 1k3r_A 130 RMRGAREAAILFGGPYKGLPEIDADIWV--NTL-P-GQCTETVRTEEAVLATLSVFNMLT 185 (192)
T ss_dssp HHTTCSEEEEECCCSSSCCCSCCCSEEE--BSS-T-TCSSSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHCCEEE--ECC-C-CCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 4567870899989865687434268489--738-9-988766608999999999998288
No 20
>>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} (A:)
Probab=85.85 E-value=1.6 Score=23.71 Aligned_cols=144 Identities=12% Similarity=0.073 Sum_probs=78.7
Q ss_pred CCCCCEEEE-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCC
Q ss_conf 544313541-3445411567775444456656555542022011221223357889999751234434332-00000011
Q gi|254781160|r 78 KQSDVQYIF-SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIY-PPTTLEFL 155 (245)
Q Consensus 78 ~~~~i~l~~-~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~-~~~~l~~~ 155 (245)
...++.+++ .+-.+..+-.|++-+.-+|++.++......... .+.+..|+- .-.++|... ...++.++
T Consensus 23 ~~~~~~v~l~~~~~~~NiG~i~Rta~afG~~~i~~~~~~~~~~--------~~~~r~s~g--~~~~~~~~~~~~~~~~~~ 92 (184)
T 2ha8_A 23 SISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISD--------KQFQHLSVS--AEQWLPLVEVKPPQLIDY 92 (184)
T ss_dssp CCCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESCGGGGGS--------HHHHHHHTT--GGGTSCEEECCGGGHHHH
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCC--------HHHHEEEEC--CEEEECHHCCCCHHHHHH
T ss_conf 6788899981686863088999999962997066425555678--------566200000--100101010232244445
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHH
Q ss_conf 233322333212630001211022210036788359998888-8888899999995799558636887--4004489999
Q gi|254781160|r 156 LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKETLHSLPFVTPLSLGPR--ILRSDTAAVA 232 (245)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~l~~~~~~~~vsLG~~--ILR~ETA~i~ 232 (245)
++........++.-+..... ..+......+.+.+++|.| .|.|++..+..... ..+-+.+. -|-.-.|+-.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~---v~IP~~g~~~SLNvs~A~~I 166 (184)
T 2ha8_A 93 LQQKKTEGYTIIGVEQTAKS---LDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVC---VEIPQQGIIRSLNVHVSGAL 166 (184)
T ss_dssp HHHHHHTTCEEEEECCCTTC---EEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEE---EECCCCSSSSCCCHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCEE---EEECCCCCCCCEEHHHHHHH
T ss_conf 55420122222233222223---3321000357855885555579999999868989---99629589970259999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781160|r 233 AMALV 237 (245)
Q Consensus 233 als~~ 237 (245)
++--+
T Consensus 167 ~l~e~ 171 (184)
T 2ha8_A 167 LIWEY 171 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 21
>>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} (A:)
Probab=84.90 E-value=2.8 Score=22.09 Aligned_cols=77 Identities=13% Similarity=0.169 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCHH---HHHCCC--CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHH
Q ss_conf 233322333212630001211022---210036--788359998888888889999999579955863688740044899
Q gi|254781160|r 156 LKNWDHNCQIVFADETCGSENSLE---KLHAIA--HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 (245)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~ 230 (245)
++..+.++.+++.|+......+.+ .+.... ....++++||.--|++++-... +. ..+|||+-.+=-+-|-
T Consensus 64 l~~l~~~~~~V~LDe~Gk~lsS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~~~~~---a~--~~lSLS~mT~pH~lar 138 (167)
T 1to0_A 64 LSKISPDAHVIALAIEGKXKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVXKR---AD--EKLSFSKXTFPHQLXR 138 (167)
T ss_dssp HTTSCTTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHH---CS--EEEESCSSCCCHHHHH
T ss_pred HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH---CC--CEEECCCCCCHHHHHH
T ss_conf 851799984898504011358999999999998558862599976888789889961---48--3776556773579999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781160|r 231 VAAMALV 237 (245)
Q Consensus 231 i~als~~ 237 (245)
++++=++
T Consensus 139 viL~EQl 145 (167)
T 1to0_A 139 LILVEQI 145 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 22
>>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} (A:90-253)
Probab=82.97 E-value=0.89 Score=25.30 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=68.7
Q ss_pred CCCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 5443135413-445411567775444456656555542022011221223357889999751234434332000000112
Q gi|254781160|r 78 KQSDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156 (245)
Q Consensus 78 ~~~~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l 156 (245)
++.++.+++- +-.+..+-.+++-+--+|++.|+.....-. -+...+..++ +|-.+...+....++.+++
T Consensus 13 ~~~~~~vvl~~i~~p~NiG~i~Rt~~afG~~~i~~~~~~~~--------~~~~~~~r~s--~g~~~~~~~~~~~~~~~~~ 82 (164)
T 1gz0_A 13 LDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSA--------QLNATAKKVA--CGAAESVPLIRVTNLARTX 82 (164)
T ss_dssp CSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSC--------CCCHHHHHHH--TTHHHHSCEEEESCHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCC--------CCHHHHHHHH--CCCCEEEEEEEECCHHHHH
T ss_conf 68977999966887018989999999708871798369766--------2045566643--1631375249978999999
Q ss_pred CCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHH
Q ss_conf 333223332126300012110222100367883599988888-88889999999
Q gi|254781160|r 157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLH 209 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~ 209 (245)
+........++........ ........+++.+++|.|+ |.|+++.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lv~G~E~~Gls~e~l~~~d 132 (164)
T 1gz0_A 83 RXLQEENIWIVGTAGEADH----TLYQSKXTGRLALVXGAEGEGXRRLTREHCD 132 (164)
T ss_dssp HHHHHTTCEEEEECTTCSE----EGGGSCCCSSEEEEEEBTTTBSCHHHHHTCS
T ss_pred HHHHHHHHHCCCCCCCCCC----CHHHHHCCCCEEEEECCCCCCCCHHHHHHCC
T ss_conf 9854300000222334566----5133313675599987787889999998589
No 23
>>1vh0_A Hypothetical UPF0247 protein SAV0024/SA0023; structural genomics, unknown function; 2.31A {Staphylococcus aureus} (A:)
Probab=81.93 E-value=3.4 Score=21.54 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCHH---HHHCC--CCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHH
Q ss_conf 233322333212630001211022---21003--6788359998888888889999999579955863688740044899
Q gi|254781160|r 156 LKNWDHNCQIVFADETCGSENSLE---KLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 (245)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~ 230 (245)
++..+.++.+++.|+......+.+ .+... ...+.++++||+--||+++=.+ .+. ..+|||+-.+=-+-|-
T Consensus 66 l~~l~~~~~vi~LD~~Gk~~sS~efA~~i~~~~~~g~~~i~F~IGG~~G~~~~~~~---ra~--~~lSlS~mTfpH~lar 140 (161)
T 1vh0_A 66 LAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQ---RSN--YALSFSKMTFPHQMMR 140 (161)
T ss_dssp HHTSCTTSEEEEEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHH---HCS--EEECSCSSCCCHHHHH
T ss_pred HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH---HHH--HEEECCCCCCCHHHHH
T ss_conf 98618998389974254567869999999999973478549994686656878998---765--6030212666289999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781160|r 231 VAAMALV 237 (245)
Q Consensus 231 i~als~~ 237 (245)
++.+=++
T Consensus 141 liL~EQi 147 (161)
T 1vh0_A 141 VVLIEQV 147 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 24
>>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.30A {Bordetella pertussis} (A:)
Probab=81.85 E-value=0.45 Score=27.20 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=76.4
Q ss_pred CCCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 5443135413-4454115677754444566565555420220112212233-5788999975123443433200000011
Q gi|254781160|r 78 KQSDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRV-RTYTISAAEQCDILTLPFIYPPTTLEFL 155 (245)
Q Consensus 78 ~~~~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~-~~ii~eA~eQsgr~~lP~i~~~~~l~~~ 155 (245)
+..++.+++- +-.+..+-.+++-+--+|++.++.+....... .| .+.++.|+ -+..++|.+....++.++
T Consensus 7 ~~~~~~vvl~~v~~p~NiG~i~R~a~~fG~~~i~l~~~~~~~~------~~~~~~~r~s~--g~~~~~~~~~~~~~~~~~ 78 (173)
T 3kty_A 7 AFSRVRFIXTQPSHPGNVGSAARAIKTXGFGELVLVAPRFPDX------TAQPEAVALAS--GALDVLERAAVHDTLEEA 78 (173)
T ss_dssp HHTTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTG------GGSHHHHHHHT--TCHHHHHTCEEESCHHHH
T ss_pred HHCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC------CCCHHHHHHCC--CCEEEEEEEEECCHHHHH
T ss_conf 1386599992798987499999999982998899989977777------88788987338--760454442103329999
Q ss_pred CCCCCCCCCCCCCCCHHC--------CCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHHHHHCCCCEEEECCCC--CC
Q ss_conf 233322333212630001--------211022210036788359998888-8888899999995799558636887--40
Q gi|254781160|r 156 LKNWDHNCQIVFADETCG--------SENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKETLHSLPFVTPLSLGPR--IL 224 (245)
Q Consensus 156 l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~l~~~~~~~~vsLG~~--IL 224 (245)
++.........+...... .......+......+.+.+++|+| .|.|+++.+.....- .+-+-+. =|
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v---~IP~~g~~~SL 155 (173)
T 3kty_A 79 LAPVTLAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRIC---HIPANPQYSSL 155 (173)
T ss_dssp HTTCSEEEEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSEEE---ECCCCSTTCCC
T ss_pred HHHCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHCCEEE---EECCCCCCCCE
T ss_conf 852022210000012233432322343322233333214676289977756788989997479799---94189899826
Q ss_pred CHHHHHHHHHH
Q ss_conf 04489999999
Q gi|254781160|r 225 RSDTAAVAAMA 235 (245)
Q Consensus 225 R~ETA~i~als 235 (245)
-.-+|+-.++-
T Consensus 156 Nvs~A~aI~l~ 166 (173)
T 3kty_A 156 NVAQALQLAAW 166 (173)
T ss_dssp CHHHHHHHHHH
T ss_pred EHHHHHHHHHH
T ss_conf 78999999999
No 25
>>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} (A:)
Probab=80.84 E-value=1.8 Score=23.23 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCHHH---HHCCC-CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHH
Q ss_conf 2333223332126300012110222---10036-7883599988888888899999995799558636887400448999
Q gi|254781160|r 156 LKNWDHNCQIVFADETCGSENSLEK---LHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 (245)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i 231 (245)
++..+.++.+++.|+......+.+- +.... ..+.++++||..-|++++-.+ .+. ..+|||+-.+--+-|-+
T Consensus 59 l~~i~~~~~~V~LDe~Gk~lsS~efA~~i~~~~~~g~~i~FiIGG~~Gl~~~v~~---~a~--~~lSlS~mTfpH~Larl 133 (163)
T 1o6d_A 59 TNRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEIFA---KAH--RVFSLSKMTFTHGMTVL 133 (163)
T ss_dssp HTTCCTTCEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGG---GCS--EEEECCSSCCCHHHHHH
T ss_pred HHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHH---HCC--CEEECCCCCCHHHHHHH
T ss_conf 9607999989997478787782999999999995599679999678888989997---408--58957757664799999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781160|r 232 AAMALV 237 (245)
Q Consensus 232 ~als~~ 237 (245)
+.+=++
T Consensus 134 iL~EQi 139 (163)
T 1o6d_A 134 IVLEQI 139 (163)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 26
>>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} (A:)
Probab=79.12 E-value=1.1 Score=24.62 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=63.9
Q ss_pred CCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43135413-44541156777544445665655554202201122122335788999975123443433200000011233
Q gi|254781160|r 80 SDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 (245)
Q Consensus 80 ~~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~ 158 (245)
+++.+++- +-++..+-.+++-+.-+|++.++..--..... .. +..+.. .|..+...+....++.++++.
T Consensus 4 ~~~~vvl~~i~~~~NiG~i~Rta~afG~~~i~~~~~~~~~~-~~---~~~~~s------~g~~~~~~~~~~~~~~~~~~~ 73 (160)
T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLD-DA---KMRRAG------LDYHEYAQMRVHRDWDAFVAA 73 (160)
T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCCC-HH---HHHHTT------CCHHHHHTCEEESSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCC-CC---CCCCCC------CCHHHHHCCHHCCCHHHHHHH
T ss_conf 75699994799888599999999984996786069976745-23---344445------742322111102427776654
Q ss_pred CCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHH
Q ss_conf 3223332126300012110222100367883599988888-88889999999
Q gi|254781160|r 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLH 209 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~ 209 (245)
.......++........ ........+++.+++|.|+ |.|+++++...
T Consensus 74 ~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~lv~G~E~~Gl~~e~l~~cd 121 (160)
T 3e5y_A 74 EAPDPARMFAFTTRGSG----RFHDRAFEPGDWFVFGAETRGLAPALVDRFA 121 (160)
T ss_dssp HCCCGGGEEEECSTTCE----EGGGSCCCTTCEEEEEBTTTBSCHHHHTTSC
T ss_pred HHCCCEEEEEEECCCCC----CCCCCCCCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 20354069984023443----2212345641189971655548999998623
No 27
>>3ic6_A Putative methylase family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.59A {Neisseria gonorrhoeae fa 1090} (A:1-201)
Probab=78.50 E-value=2.9 Score=21.93 Aligned_cols=160 Identities=14% Similarity=0.065 Sum_probs=79.8
Q ss_pred CCCCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH-----------HHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 55443135413-445411567775444456656555542022011-----------221223357889999751234434
Q gi|254781160|r 77 TKQSDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT-----------HYNMDRVRTYTISAAEQCDILTLP 144 (245)
Q Consensus 77 ~~~~~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~-----------~~k~eR~~~ii~eA~eQsgr~~lP 144 (245)
.+.+++.+++- +-.+..+-.|++-+--+|++.|+.+-.....+. ....+-|...+..++.- ...++|
T Consensus 13 ~~~~~~~ivld~v~~p~NiG~i~Rsa~afGv~~i~lv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~g-a~~~~~ 91 (201)
T 3ic6_A 13 DYLGNIRIILTRTSHPANIGSAARAXKTXGLHRLTIVTPNLXATPXTENPPVFNPDDVQSFALPEESFILASG-AADVLH 91 (201)
T ss_dssp GGGGGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGG-GHHHHH
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHCC-CHHHHH
T ss_conf 0205828999379888719999999998599869997887787534655431045321245566899999467-698876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHC------CCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEE
Q ss_conf 33200000011233322333212630001------2110222100367883599988888-8888999999957995586
Q gi|254781160|r 145 FIYPPTTLEFLLKNWDHNCQIVFADETCG------SENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFVTPL 217 (245)
Q Consensus 145 ~i~~~~~l~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~~v 217 (245)
-......++.+.........+........ .......+......+++++++|.|+ |.|+++.+.....-.+ |-
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvlG~E~~Gls~~~l~~~d~~v~I-P~ 170 (201)
T 3ic6_A 92 NAEIVATLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLXTI-NG 170 (201)
T ss_dssp TCEEESCHHHHHTTEEEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSEEECC-CC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHEEC-CC
T ss_conf 65401239999975122102222100243332252100101222104787347876765577216899864222404-67
Q ss_pred ECCCCCCCHHHHHHHHHHHHH
Q ss_conf 368874004489999999999
Q gi|254781160|r 218 SLGPRILRSDTAAVAAMALVQ 238 (245)
Q Consensus 218 sLG~~ILR~ETA~i~als~~~ 238 (245)
.=..+-|=.-+|+-+++--+.
T Consensus 171 ~g~~~SLNvs~A~aI~l~e~~ 191 (201)
T 3ic6_A 171 NPDYFSLNLAQAVQVVCYEIF 191 (201)
T ss_dssp CTTCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCEEHHHHHHHHHHHHH
T ss_conf 899886709999999999999
No 28
>>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae} (A:1-174)
Probab=77.73 E-value=1.9 Score=23.20 Aligned_cols=146 Identities=12% Similarity=-0.005 Sum_probs=68.7
Q ss_pred CCCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 5443135413-445411567775444456656555542022011221223357889999751234434332000000112
Q gi|254781160|r 78 KQSDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156 (245)
Q Consensus 78 ~~~~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l 156 (245)
+.+++.+++- +-.+..+-.+++-+.-+|++.++..-.+.-..+..+.- ..|.+ ++|. ....+..+++
T Consensus 4 ~~~~~~vvl~~v~~~~NiG~i~Rsa~~fG~~~i~~~~~~~~~~~~~~~s------~ga~~-----~~~~-~~~~~~~~~~ 71 (174)
T 3ilk_A 4 XLENIRIVLIETSHSGNIGSAARAXKTXGLTQLCLVSPKSVDEQSYALS------AGAEN-----IVKN-ARVVDSFDEA 71 (174)
T ss_dssp SSTTEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCSCCSHHHHHTT------TTCHH-----HHHH-CEEESSHHHH
T ss_pred CHHCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH------CCCCC-----CCCE-EEEEEHHHHH
T ss_conf 3338789980898987099999999974998899958999998998863------34122-----3431-7994206566
Q ss_pred CCCCCCCCCCCCCCHH----CCCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHH
Q ss_conf 3332233321263000----1211022210036788359998888-8888899999995799558636887400448999
Q gi|254781160|r 157 KNWDHNCQIVFADETC----GSENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i 231 (245)
................ ........+......+++.+++|.| -|.|+++.+.....=.+ |..=+-+=|=.-+|+-
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~e~l~~~d~~v~I-P~~~~~~SLNvs~A~a 150 (174)
T 3ilk_A 72 VDDCSLVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNI-PANPDYSSLNLAXAVQ 150 (174)
T ss_dssp TTTCSEEEEECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECC-CCCTTSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCHHHHCCCCEEEE-CCCCCCCCCCHHHHHH
T ss_conf 665556666665420343110144200000014788668860666689981222010013541-2689852253899999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781160|r 232 AAMAL 236 (245)
Q Consensus 232 ~als~ 236 (245)
.++--
T Consensus 151 I~l~e 155 (174)
T 3ilk_A 151 LVSYE 155 (174)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 29
>>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* (A:119-287)
Probab=77.11 E-value=3.4 Score=21.50 Aligned_cols=145 Identities=11% Similarity=0.097 Sum_probs=71.1
Q ss_pred CCCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 5443135413-445411567775444456656555542022011221223357889999751234434332000000112
Q gi|254781160|r 78 KQSDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156 (245)
Q Consensus 78 ~~~~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l 156 (245)
+..++.+++- +-.+..+-.+++-+--+|++.++...-.-. -+...++.++. |..+...+....++++++
T Consensus 5 ~~~~~~vvl~~~~~p~NiGai~Rta~afG~~~i~~~~~~~~--------~~~~~~~r~s~--g~~~~~~~~~~~~~~~~~ 74 (169)
T 1x7o_A 5 REDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAAD--------VYDPKSVRSST--GSLFSLPAVRVPSPGEVX 74 (169)
T ss_dssp CTTCEEEEEESCSCHHHHHHHHHHHHHTTCCEEEEESSSSC--------TTSHHHHHHTT--TGGGTSCEEEESSHHHHH
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCC--------CCCCHHHHCCC--HHHHHCCCCCCCCCCCCC
T ss_conf 66728999834121665998877887354676986313333--------33100210220--021110122334110000
Q ss_pred CCCCCCCC-----CCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHH
Q ss_conf 33322333-----212630001211022210036788359998888-888889999999579955863688740044899
Q gi|254781160|r 157 KNWDHNCQ-----IVFADETCGSENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 (245)
Q Consensus 157 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~ 230 (245)
........ .+.... ......+.+....+.+++++|.| -|.|+++++.....=.+ |.+=.-+-|=.-.|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~lvfG~E~~Gl~~~~l~~~d~~v~I-P~~g~~~SLNvs~A~ 149 (169)
T 1x7o_A 75 DWVEARRAAGTPIVLVGTD----EHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSI-PXAGSASSLNAANAA 149 (169)
T ss_dssp HHHHHHHHHTCCCEEEEEC----TTCSEEGGGSCTTSCEEEEECBTTTBSCHHHHHHCSEEEEC-CCSSSSCCCCHHHHH
T ss_pred CCCHHHHHCCCCEEEECCH----HCCCCCCHHHHCCCCEEEEECCCCCCCCHHHHHHCCEEEEE-CCCCCCCEEHHHHHH
T ss_conf 0001344337756874110----00343211120268619998888878899999858989998-899999713199999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781160|r 231 VAAMALV 237 (245)
Q Consensus 231 i~als~~ 237 (245)
..++.-+
T Consensus 150 aI~lye~ 156 (169)
T 1x7o_A 150 TAILYEA 156 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 30
>>1mxi_A YIBK, hypothetical tRNA/RRNA methyltransferase HI0766; S-adenosylhomocysteine, SPOU family, structure 2 function project; HET: SAH; 1.70A {Haemophilus influenzae} (A:)
Probab=75.36 E-value=5.9 Score=19.93 Aligned_cols=136 Identities=12% Similarity=0.132 Sum_probs=70.0
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 41344541156777544445665655554202201122122335788999975123443433200000011233322333
Q gi|254781160|r 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQ 164 (245)
Q Consensus 85 ~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~ 164 (245)
+..+-++..+-.+++-+--+|++.++......... ..+..| . + .|..+.-.+....++.++++.......
T Consensus 6 l~~~~~~~NvG~i~Rta~afG~~~i~~~~~~~~~~-~~~~~r---~----s--~g~~~~~~~~~~~~~~~~l~~~~~~~~ 75 (160)
T 1mxi_A 6 LYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWD-DKRLRR---S----G--LDYHEFAEIKRHKTFEAFLESEKPKRL 75 (160)
T ss_dssp EESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCTT-CHHHHT---T----S--CCGGGSSSCEEESSHHHHHHHHCCSEE
T ss_pred EECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCC-CCCEEE---E----C--CCEEEECCEEEHHHHHHHHHHHHCCCE
T ss_conf 91898988399999999975998999727877653-410022---0----0--012230010100178888765411432
Q ss_pred CCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCC-EEEECCCCCCCHHHHHHHHHHH
Q ss_conf 2126300012110222100367883599988888-8888999999957995-5863688740044899999999
Q gi|254781160|r 165 IVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFV-TPLSLGPRILRSDTAAVAAMAL 236 (245)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~-~~vsLG~~ILR~ETA~i~als~ 236 (245)
.+...+ ...........++..+++|+|+ |.|+++++.....-.+ .|..=.-.-|=.-.|+-.++.-
T Consensus 76 ~~~~~~------~~~~~~~~~~~~~~alv~G~E~~Gls~e~l~~~d~~v~i~IP~~g~~~SLNvsvA~aI~l~e 143 (160)
T 1mxi_A 76 FALTTK------GCPAHSQVKFKLGDYLMFGPETRGIPMSILNEMPMEQKIRIPMTANSRSMNLSNSVAVTVYE 143 (160)
T ss_dssp EEECTT------CSSBGGGSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCCTTCCCCCHHHHHHHHHHH
T ss_pred EEECCC------CCCCHHCCCCCCCEEEEEECCCCCCCHHHHHHCCCCEEEECCCCCCCCEEEHHHHHHHHHHH
T ss_conf 331112------23320001345630899944778889889974367749977799999840799999999999
No 31
>>3gyq_A RRNA (adenosine-2'-O-)-methyltransferase; rRNA methyltransferase, spout mtases, SAM, trefoil knot, antibiotic resistance; HET: SAM; 2.45A {Streptomyces cyaneus} (A:113-272)
Probab=67.99 E-value=3.3 Score=21.59 Aligned_cols=118 Identities=13% Similarity=0.027 Sum_probs=65.4
Q ss_pred CCCEE-EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43135-41344541156777544445665655554202201122122335788999975123443433200000011233
Q gi|254781160|r 80 SDVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 (245)
Q Consensus 80 ~~i~l-~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~ 158 (245)
.++.+ +..+-.+..+-.|++-+--+|++.++..-.. +. +.+...+..|+ .+..+.|.+......+.+.+.
T Consensus 6 ~~~~ivL~~v~~p~NiGai~Rta~a~G~~~i~l~~~~-~~------~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~ 76 (160)
T 3gyq_A 6 RGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSD-IT------SIADRRLQRAS--RGYVFSLPVVLSGREEAIAFI 76 (160)
T ss_dssp CSCEEEEESCCCHHHHHHHHHHHHHTTCSEEEEESCC-CS------CTTCHHHHHHT--TTGGGSSCEEEECHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCC-CC------CCCCCCCCCCC--CCHHHHHCCCCCCCHHHHHHH
T ss_conf 8739999676227789999999983446646302454-22------11111001455--211120012223211456666
Q ss_pred CCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHHHHH
Q ss_conf 322333212630001211022210036788359998888-8888899999995
Q gi|254781160|r 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKETLHS 210 (245)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~l~~ 210 (245)
......++..+..... .........+++.+++|.| -|.|+++++....
T Consensus 77 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~lvlG~E~~Gls~e~l~~~d~ 125 (160)
T 3gyq_A 77 RDSGMQLMTLKADGDI----SVKELGDNPDRLALLFGSEKGGPSDLFEEASSA 125 (160)
T ss_dssp HTTTCEEEEECTTCSE----EGGGGGGCCSCEEEEEESSTTCSCGGGTTTCCE
T ss_pred HCCCHHEEECCCCCCC----CCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCE
T ss_conf 3000001100123443----222133588864899768888879999974893
No 32
>>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83} (A:99-257)
Probab=67.78 E-value=4.4 Score=20.80 Aligned_cols=118 Identities=11% Similarity=0.068 Sum_probs=62.5
Q ss_pred CCEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31354-13445411567775444456656555542022011221223357889999751234434332000000112333
Q gi|254781160|r 81 DVQYI-FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW 159 (245)
Q Consensus 81 ~i~l~-~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~ 159 (245)
++.++ ..+-.+...-.|++-+.-+|++.++........ +...+..++. |-.+.-.+....+++++++..
T Consensus 5 ~~~vvl~~~~~~~NiG~i~Rt~~a~G~~~i~l~~~~~~~--------~~~~~~r~a~--ga~~~i~~~~~~~~~~~~~~~ 74 (159)
T 2i6d_A 5 GLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADV--------FSPKVVQASX--GALARVQPTPLKNTVDTLAYF 74 (159)
T ss_dssp SEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECTTCCCT--------TSHHHHHTST--TGGGTCEEEECSCHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC--------CCHHHHHHHH--HHHHCCCCCCCCCCHHHHHHH
T ss_conf 769998500355559999844650111157774023333--------4435554211--111010222333210022343
Q ss_pred CCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHHHHH
Q ss_conf 22333212630001211022210036788359998888-8888899999995
Q gi|254781160|r 160 DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKETLHS 210 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~l~~ 210 (245)
......++..+... ............+++++++|.| .|.++++.+....
T Consensus 75 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lv~G~E~~Gl~~~~l~~~d~ 124 (159)
T 2i6d_A 75 RRQGIPVYGAFLDG--QSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITD 124 (159)
T ss_dssp HHTTCCEEEEEEEE--EETTTSCCCCTTSCEEEEEEBTTTBSCHHHHTTCSE
T ss_pred HCCCCCCCCCCCCC--CCCCHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCC
T ss_conf 11575432222345--421002220577636999815666789999985897
No 33
>>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} (A:)
Probab=53.20 E-value=4.7 Score=20.59 Aligned_cols=148 Identities=12% Similarity=0.058 Sum_probs=87.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-------HH----------------------H-----HHH
Q ss_conf 4431354134454115677754444566565555420220-------11----------------------2-----212
Q gi|254781160|r 79 QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NT----------------------H-----YNM 124 (245)
Q Consensus 79 ~~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~-------~~----------------------~-----~k~ 124 (245)
..++.........+.+..+++.+.+.||+-|..-..+-.. +. + .-.
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gad~i~~ 94 (214)
T 1wbh_A 15 TGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAIS 94 (214)
T ss_dssp SCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEE
T ss_pred HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEC
T ss_conf 39989999789999999999999987998899947986799999999997798624557445489999999827787777
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHH
Q ss_conf 23357889999751234434332000000112333223332126300012110222100367883599988888888899
Q gi|254781160|r 125 DRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEE 204 (245)
Q Consensus 125 eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E 204 (245)
.-+..-+.+++++.|....|.++.+.......+.-.+... +.... ................. +=|...||-+.+.
T Consensus 95 ~~~~~~~~~~~~~~g~~~~~~~~t~~e~~~a~~~g~d~i~--~~~~~-~~~~~~~~~~~~~~~~~--~pI~a~GGi~~~~ 169 (214)
T 1wbh_A 95 PGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFK--FFPAE-ANGGVKALQAIAGPFSQ--VRFCPTGGISPAN 169 (214)
T ss_dssp SSCCHHHHHHHHHSSSCEEEEESSHHHHHHHHHTTCCEEE--ETTTT-TTTHHHHHHHHHTTCTT--CEEEEBSSCCTTT
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEE--EEECH-HHCCHHHHHHHHCCCCC--CCEEEECCCCHHH
T ss_conf 9898999999985599865881867999999987999799--74024-20879899987162657--8466457988888
Q ss_pred HHHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 9999957995586368874004489999
Q gi|254781160|r 205 KETLHSLPFVTPLSLGPRILRSDTAAVA 232 (245)
Q Consensus 205 ~~~l~~~~~~~~vsLG~~ILR~ETA~i~ 232 (245)
...+.+.|. ..|-+|..|.+++-+.-.
T Consensus 170 ~~~~~~aGA-d~V~vGsai~~~~d~~~~ 196 (214)
T 1wbh_A 170 YRDYLALKS-VLCIGGSWLVPADALEAG 196 (214)
T ss_dssp HHHHHTSTT-BSCEEEGGGSCHHHHHHT
T ss_pred HHHHHHCCC-EEEEECHHHCCHHHHHCC
T ss_conf 999996899-799988253796666357
No 34
>>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, histone acetyltranferase, structural genomics; NMR {Mus musculus} (A:)
Probab=52.87 E-value=16 Score=17.06 Aligned_cols=28 Identities=7% Similarity=-0.003 Sum_probs=24.3
Q ss_pred HCCCCCCCEEEEEECCCCEEEEEEECCC
Q ss_conf 0357898889999779987987530235
Q gi|254781160|r 35 VLRMKEGDNILLFNGKDGEWLSKISYVG 62 (245)
Q Consensus 35 VlRlk~Gd~i~i~dg~g~~~~~~I~~~~ 62 (245)
...+.+|+.|.+++..|..|.|+|.++.
T Consensus 10 ~~~~~vG~~v~~~~~~~~~y~AkIi~~~ 37 (133)
T 1wgs_A 10 EVTVEIGETYLCRRPDSTWHSAEVIQSR 37 (133)
T ss_dssp CCCCCTTSEEEEEETTTEEEEEEEEEEE
T ss_pred CCCEECCCEEEEEECCCCEEEEEEEEEE
T ss_conf 8547029899999389988667999988
No 35
>>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} (A:)
Probab=49.26 E-value=8.2 Score=19.02 Aligned_cols=152 Identities=11% Similarity=0.061 Sum_probs=86.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-------HH-----------HHH----------------HH
Q ss_conf 431354134454115677754444566565555420220-------11-----------221----------------22
Q gi|254781160|r 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ-------NT-----------HYN----------------MD 125 (245)
Q Consensus 80 ~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~-------~~-----------~~k----------------~e 125 (245)
.++...........+..+++++.+-|++.|..=.++-.. +. -.. +.
T Consensus 26 ~~i~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~v~~~~~~ga~~i~~~ 105 (225)
T 1mxs_A 26 ARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTP 105 (225)
T ss_dssp HSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECS
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCEEECC
T ss_conf 98789997499999999999999869988999589804999999999758983897651367999999997898199779
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 33578899997512344343320000001123332233321263000121102221003678835999888888888999
Q gi|254781160|r 126 RVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK 205 (245)
Q Consensus 126 R~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~ 205 (245)
-+..-+..++.+.|....|.++.+..+......-.+...+-.... . ............. ..+-|...||.+.+.+
T Consensus 106 ~~~~~~~~~~~~~g~~~~~~~~~~~e~~~a~~~g~~~~~~~~~~~--~-~~~~~~~~~~~~~--~~ipi~a~GGi~~~~~ 180 (225)
T 1mxs_A 106 GITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRFKLFPAEI--S-GGVAAIKAFGGPF--GDIRFCPTGGVNPANV 180 (225)
T ss_dssp SCCHHHHHHHHHCSSCEECEECSHHHHHHHHTTTCCEEEETTHHH--H-THHHHHHHHHTTT--TTCEEEEBSSCCTTTH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCC--C-CCHHHHHHHHCCC--CCCEEEEECCCCHHHH
T ss_conf 899999999986599726887999999999986988188554322--3-6899999985303--4680663479898999
Q ss_pred HHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 99995799558636887400448999999999
Q gi|254781160|r 206 ETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 (245)
Q Consensus 206 ~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~ 237 (245)
..+.++|. ..|-+|.-+.+.+...-.+...+
T Consensus 181 ~~~~~aGA-d~v~vgsai~~~~~~~~~~~~~l 211 (225)
T 1mxs_A 181 RNYMALPN-VMCVGTTWMLDSSWIKNGDWARI 211 (225)
T ss_dssp HHHHHSTT-BCCEEECTTSCHHHHHTTCHHHH
T ss_pred HHHHHCCC-EEEEECCCCCCHHHHCCCCHHHH
T ss_conf 99984788-49997654489888517999999
No 36
>>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics, JCSG, PSI, protein structure initiative; 1.65A {Thermotoga maritima} (A:1-80)
Probab=43.77 E-value=22 Score=16.16 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.8
Q ss_pred HCCCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf 03578988899997799879875302
Q gi|254781160|r 35 VLRMKEGDNILLFNGKDGEWLSKISY 60 (245)
Q Consensus 35 VlRlk~Gd~i~i~dg~g~~~~~~I~~ 60 (245)
-.-+++||.|.+++++|..+...+..
T Consensus 17 ~~~i~eGD~Vil~~~~~~~~~v~l~~ 42 (80)
T 1o54_A 17 ADTLKPGDRVLLSFEDESEFLVDLEK 42 (80)
T ss_dssp GGCCCTTCEEEEEETTSCEEEEECCT
T ss_pred CCCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 14379999899997999789999878
No 37
>>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=43.49 E-value=17 Score=16.88 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=25.5
Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCC-CEEEE
Q ss_conf 789888999977998798753023555-23899
Q gi|254781160|r 38 MKEGDNILLFNGKDGEWLSKISYVGKS-IRFKV 69 (245)
Q Consensus 38 lk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i 69 (245)
..+||.|+++.|+-.-..+.+.+++.+ +++..
T Consensus 8 f~pGD~VeV~~GEl~~l~G~V~sv~gd~Vti~p 40 (59)
T 2e6z_A 8 FQPGDNVEVCEGELINLQGKILSVDGNKITIMP 40 (59)
T ss_dssp CCTTSEEEECSSTTTTCEEEECCCBTTEEEEEE
T ss_pred CCCCCEEEEECCEECCCEEEEEEECCCEEEEEE
T ss_conf 389998999227753779999997099899987
No 38
>>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} (A:)
Probab=41.62 E-value=24 Score=15.94 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=36.8
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 7883599988888888899999995799558636887400448999999999
Q gi|254781160|r 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 (245)
Q Consensus 186 ~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~ 237 (245)
...+++++||+=-||+++=.+. +. ..+|||+-.+--+-|-++.+=++
T Consensus 94 ~g~~i~F~IGG~~G~~~~v~~~---a~--~~lSls~mTfpH~larvvL~EQi 140 (155)
T 1ns5_A 94 DGRDVSLLIGGPEGLSPACKAA---AE--QSWSLSALTLPHPLVRVLVAESL 140 (155)
T ss_dssp HCSCEEEEECBTTBCCHHHHHH---CS--EEECCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHH---CC--CEEECCCCCCCHHHHHHHHHHHH
T ss_conf 2997799997787658889974---19--07866688870899999999999
No 39
>>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} (A:24-180)
Probab=40.10 E-value=13 Score=17.71 Aligned_cols=115 Identities=7% Similarity=-0.038 Sum_probs=56.9
Q ss_pred CEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 135413-4454115677754444566565555420220112212233578899997512344343320000001123332
Q gi|254781160|r 82 VQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD 160 (245)
Q Consensus 82 i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~ 160 (245)
+.+++- +-.+..+-.+++-+--+|++.++..-+..-...+ ....|+ .+-.++|.. ...++.+++....
T Consensus 3 ~~ivl~~~~~p~NiG~i~Rta~afG~~~i~~~~~~~~~~~~--------~~~~a~--g~~~~~~~~-~~~~~~~~~~~~~ 71 (157)
T 1zjr_A 3 LIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKAKI--------NEGITQ--GSHKWVFIE-KVDNPVQKLLEFK 71 (157)
T ss_dssp EEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTCCCC--------CHHHHT--TGGGSSEEE-ECSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHH--------HHHHHC--CCCCCCCEE-EEEECHHHCCCCC
T ss_conf 89999589881678999999986599789985899885066--------798743--344346468-9841033201212
Q ss_pred CCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHHHHH
Q ss_conf 2333212630001211022210036788359998888-8888899999995
Q gi|254781160|r 161 HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKETLHS 210 (245)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~l~~ 210 (245)
.....++.-+.... .....+....+.+.+++|.| .|.|++..+....
T Consensus 72 ~~~~~ii~~~~~~~---~~~~~~~~~~~~~~lvlG~E~~Gls~~~~~~~d~ 119 (157)
T 1zjr_A 72 NRGFQIVATWLSKE---SVNFREVDYTKPTVLVVGNELQGVSPEIVEIADK 119 (157)
T ss_dssp HTTCEEEEEBCSTT---SEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSE
T ss_pred CCCEEEEECCCCCC---CCCCCCCCCCCCEEEEECCCCCCCCHHHHHCCCE
T ss_conf 22101221012333---2222013577625999668434378999955886
No 40
>>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} (A:1-132,A:311-351)
Probab=38.55 E-value=15 Score=17.25 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=22.6
Q ss_pred CCCCCCCHHHHHHHH-------HCCCCEEEECCCCCCCHHH
Q ss_conf 888888889999999-------5799558636887400448
Q gi|254781160|r 195 GPEGGYHSEEKETLH-------SLPFVTPLSLGPRILRSDT 228 (245)
Q Consensus 195 GPEGGfs~~E~~~l~-------~~~~~~~vsLG~~ILR~ET 228 (245)
=||-||++..++.|- .++|...|..|+|==|.-+
T Consensus 41 ~Pe~Gw~d~~Ie~~L~~Ls~mDsNNf~~~vgvGEREgRv~s 81 (173)
T 3hl2_A 41 CPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVAS 81 (173)
T ss_dssp CCSSCCCHHHHHHHHHHHHTTBGGGCSSCCCCSSCCCCCSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC
T ss_conf 99778999999999999873457666444666504422125
No 41
>>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate- loop, pyridoxal phosphate, selenocysteine synthase (SECS; HET: LLP; 1.65A {Mus musculus} (A:1-114,A:295-333)
Probab=38.26 E-value=14 Score=17.42 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=18.9
Q ss_pred CCCCCCCHHHHHHHH-------HCCCCEEEECCCCCCCHH
Q ss_conf 888888889999999-------579955863688740044
Q gi|254781160|r 195 GPEGGYHSEEKETLH-------SLPFVTPLSLGPRILRSD 227 (245)
Q Consensus 195 GPEGGfs~~E~~~l~-------~~~~~~~vsLG~~ILR~E 227 (245)
=||-||++..++.|- .++|...|..|+|==|.-
T Consensus 23 ~Pe~Gw~d~~Ie~lL~~Ls~mDsNNf~~nvgvGEREgRv~ 62 (153)
T 3bc8_A 23 CPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVA 62 (153)
T ss_dssp CCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEC
T ss_conf 9977899999999999998455677666467676565103
No 42
>>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} (A:)
Probab=36.90 E-value=29 Score=15.47 Aligned_cols=27 Identities=4% Similarity=0.158 Sum_probs=13.0
Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf 789888999977998798753023555
Q gi|254781160|r 38 MKEGDNILLFNGKDGEWLSKISYVGKS 64 (245)
Q Consensus 38 lk~Gd~i~i~dg~g~~~~~~I~~~~k~ 64 (245)
+++|+.|...+-+|..|.|+|+.++.+
T Consensus 6 ~~vG~rV~ar~~~g~~y~g~I~~v~~~ 32 (118)
T 2qqr_A 6 ITAGQKVISKHKNGRFYQCEVVRLTTE 32 (118)
T ss_dssp CCTTCEEEEECTTSSEEEEEEEEEEEE
T ss_pred CCCCCEEEEECCCCCEEEEEEEEECCC
T ss_conf 577999999928998988899997578
No 43
>>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=35.16 E-value=30 Score=15.30 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=24.6
Q ss_pred HHCCCCCCCEEEEEE-CCCCEEEEEEECCCCC
Q ss_conf 703578988899997-7998798753023555
Q gi|254781160|r 34 HVLRMKEGDNILLFN-GKDGEWLSKISYVGKS 64 (245)
Q Consensus 34 kVlRlk~Gd~i~i~d-g~g~~~~~~I~~~~k~ 64 (245)
.=|.++.||.|.|++ .++++|.++....++.
T Consensus 32 ~eL~~~~Gd~i~Vl~~~~~~Ww~~~~~~~g~~ 63 (90)
T 2yup_A 32 VELSFRKGEHICLIRKVNENWYEGRITGTGRQ 63 (90)
T ss_dssp SBCCCCTTCEEEESSCCCSSEEEEECTTTCCE
T ss_pred CEEEECCCCEEEEEEECCCCEEEEEECCCCCE
T ss_conf 88447699999993853798699898799989
No 44
>>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=35.06 E-value=31 Score=15.29 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=26.7
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCCCCEEE
Q ss_conf 357898889999779987987530235552389
Q gi|254781160|r 36 LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFK 68 (245)
Q Consensus 36 lRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~ 68 (245)
...++||.+...-.+|..|.|+|+.+..+....
T Consensus 8 ~~~~~G~~c~A~~~Dg~~Yra~I~~v~~~~~~~ 40 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINKEGTFT 40 (74)
T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEESTTSSEE
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCCCEEE
T ss_conf 567889999999899989968999986798899
No 45
>>1t3l_A Dihydropyridine-sensitive L-type, calcium channel beta-2 subunit; protein-peptide complex, SH3 domain, guanylate kinase domain; 2.20A {Oryctolagus cuniculus} (A:1-141)
Probab=33.87 E-value=32 Score=15.16 Aligned_cols=33 Identities=6% Similarity=0.067 Sum_probs=24.7
Q ss_pred CCCCCCCEEEEEE-CCCCEEEEEEEC-CCCCCEEE
Q ss_conf 3578988899997-799879875302-35552389
Q gi|254781160|r 36 LRMKEGDNILLFN-GKDGEWLSKISY-VGKSIRFK 68 (245)
Q Consensus 36 lRlk~Gd~i~i~d-g~g~~~~~~I~~-~~k~~~~~ 68 (245)
|.++.||.|.|.+ .++++|.|++.. .++...+-
T Consensus 62 L~f~~Gd~i~Vl~~~~~~Ww~g~~~~~~g~~G~vP 96 (141)
T 1t3l_A 62 ISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIP 96 (141)
T ss_dssp CCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC
T ss_conf 65157887999865888766678737888666367
No 46
>>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} (A:)
Probab=33.60 E-value=32 Score=15.13 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=22.1
Q ss_pred HCCCCCCCEEEEEE--CCCCEEEEEEECCCCC
Q ss_conf 03578988899997--7998798753023555
Q gi|254781160|r 35 VLRMKEGDNILLFN--GKDGEWLSKISYVGKS 64 (245)
Q Consensus 35 VlRlk~Gd~i~i~d--g~g~~~~~~I~~~~k~ 64 (245)
=|.++.||.|.|.+ +++++|.|.+...++.
T Consensus 34 ELs~~~Gd~i~Vl~~~~~~gWw~g~~~~~g~~ 65 (78)
T 1k1z_A 34 FLRLNPGDIVELTKAEAEHNWWEGRNTATNEV 65 (78)
T ss_dssp CCCBCTTCEEEEEECCSSCSCEEEEETTTTEE
T ss_pred CCCCCCCCEEEEEECCCCCCEEEEEECCCCCE
T ss_conf 62188999999987748888899998889989
No 47
>>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} (A:1-67)
Probab=32.06 E-value=34 Score=14.97 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=20.7
Q ss_pred CCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf 578988899997799879875302
Q gi|254781160|r 37 RMKEGDNILLFNGKDGEWLSKISY 60 (245)
Q Consensus 37 Rlk~Gd~i~i~dg~g~~~~~~I~~ 60 (245)
.+++||.|.+++++|..+...+..
T Consensus 6 ~i~eGD~Vil~~~~~~~~~~~l~~ 29 (67)
T 1i9g_A 6 PFSIGERVQLTDAKGRRYTMSLTP 29 (67)
T ss_dssp SCCTTCEEEEEETTCCEEEEECCT
T ss_pred CCCCCCEEEEEECCCCEEEEEECC
T ss_conf 889998899997899589999889
No 48
>>3cw1_D Small nuclear ribonucleoprotein SM D3; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (D:)
Probab=31.96 E-value=34 Score=14.96 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=30.3
Q ss_pred HHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEE
Q ss_conf 870357898889999779987987530235552389975
Q gi|254781160|r 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 (245)
Q Consensus 33 ~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~ 71 (245)
.++|+--.|..|.|---+|..|.+++..++....+.+..
T Consensus 7 l~lL~~~~g~~V~VeLkng~~~~G~L~~~D~~MNi~L~~ 45 (126)
T 3cw1_D 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSN 45 (126)
T ss_pred HHHHHHHCCCEEEEEECCCEEEEEEEEEECCCCEEEEEE
T ss_conf 999987179989999899719999999874884789989
No 49
>>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27} (A:1-64)
Probab=31.57 E-value=31 Score=15.29 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=19.8
Q ss_pred CCCCCEEEEEECCCCEEEEEEEC
Q ss_conf 78988899997799879875302
Q gi|254781160|r 38 MKEGDNILLFNGKDGEWLSKISY 60 (245)
Q Consensus 38 lk~Gd~i~i~dg~g~~~~~~I~~ 60 (245)
+++||.|.+++++|..+...+..
T Consensus 4 i~~GD~Vil~~~~~~~~~~~l~~ 26 (64)
T 2pwy_A 4 MAWPGPLLLKDRKGRAYLVFPKE 26 (64)
T ss_dssp ----CCEEEECTTCCEEEECCCT
T ss_pred CCCCCCEEEEECCCCEEEEEECC
T ss_conf 66687589996899879999878
No 50
>>2qk4_A Trifunctional purine biosynthetic protein adenosine-3; purine synthesis, enzyme, protein-ATP complex, structural genomics; HET: ATP; 2.45A {Homo sapiens} (A:1-120)
Probab=29.65 E-value=18 Score=16.76 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=23.2
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 99988888888899999995799558636887
Q gi|254781160|r 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222 (245)
Q Consensus 191 ~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ 222 (245)
+++||||.=..+-=.+.|++.|+ ++ +||.
T Consensus 91 lvviGPE~pL~~Gi~D~l~~~Gi--~v-fGPs 119 (120)
T 2qk4_A 91 FVVVGPEAPLAAGIVGNLRSAGV--QC-FGPT 119 (120)
T ss_dssp EEEECSSHHHHTTHHHHHHHTTC--CE-ESCC
T ss_pred EEEECCCHHHHHHHHHHHHHCCC--EE-EEHH
T ss_conf 99989738988789999985898--46-5016
No 51
>>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} (A:241-452)
Probab=29.31 E-value=38 Score=14.68 Aligned_cols=120 Identities=12% Similarity=0.075 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 541156777544445665655554202201122122335788999975--123443433200000011233322333212
Q gi|254781160|r 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQ--CDILTLPFIYPPTTLEFLLKNWDHNCQIVF 167 (245)
Q Consensus 90 k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQ--sgr~~lP~i~~~~~l~~~l~~~~~~~~~~~ 167 (245)
-.+..+.+++.+.++|++.+++-... +.. .+...-++ .+....+.++.+.......+. ..+.+++
T Consensus 72 v~~~~~~~~~~~~~~g~d~v~l~~~~-~~~----------~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~--~~D~il~ 138 (212)
T 1pii_A 72 RNHDIADVVDKAKVLSLAAVQLHGNE-EQL----------YIDTLREALPAHVAIWKALSVGETLPAREFQ--HVDKYVL 138 (212)
T ss_dssp SSCCHHHHHHHHHHHTCSEEEECSCC-CHH----------HHHHHHHHSCTTSEEEEEEECSSSCCCCCCT--TCCEEEE
T ss_pred ECCCHHHHHHHHHHCCCCEEEECCCC-CHH----------HHHHHHHHCCCCEEEEEECCCCCCCCHHHHH--HHHHHHC
T ss_conf 37999999999985599868988999-889----------9999976467646999841644531256674--0106443
Q ss_pred CCCHH--CCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHH
Q ss_conf 63000--12110222100367883599988888888899999995799558636887400448
Q gi|254781160|r 168 ADETC--GSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 (245)
Q Consensus 168 ~~~~~--~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ET 228 (245)
..... +....+..+......+ |-..||.+.+.+..+.+.|. ..|.+|..|.+++.
T Consensus 139 ~~~~~~~g~~~~~~~l~~~~~~p-----i~~~GGI~~~ni~~~~~~G~-dgi~v~s~i~~~~~ 195 (212)
T 1pii_A 139 DNGQGGSGQRFDWSLLNGQSLGN-----VLLAGGLGADNCVEAAQTGC-AGLDFNSAVESQPG 195 (212)
T ss_dssp ESCSCCSSCCCCGGGGTTSCCTT-----EEEESSCCTTTHHHHHTTCC-SEEEECGGGEEETT
T ss_pred CCCCCCCCCEECHHHHCCCCCCC-----EEEECCCCHHHHHHHHHCCC-CEEECCCCCCCCCC
T ss_conf 78969688786888836777898-----79987899999999985699-99991572258999
No 52
>>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (T:20-120)
Probab=28.86 E-value=39 Score=14.63 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=33.7
Q ss_pred EEECHHH-HHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCC-CCEEEE
Q ss_conf 9987798-75998703578988899997799879875302355-523899
Q gi|254781160|r 22 GKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKV 69 (245)
Q Consensus 22 i~L~~~~-~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k-~~~~~i 69 (245)
-.|+.+. ..|-.+-++++.||.|.|.-|+..--.++|..+.. ...+.+
T Consensus 7 a~lSkelr~k~~~~~~~I~~GD~V~Vi~G~dkGk~GkV~~V~~~~~~V~V 56 (101)
T 1vq8_T 7 ATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHV 56 (101)
T ss_dssp EEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEE
T ss_pred CCCCHHHHHHHCCCCCCEECCCEEEEEECCCCCCCCEEEEEECCCCEEEE
T ss_conf 61685549884873340316999999154789975139999877899999
No 53
>>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} (A:)
Probab=27.88 E-value=38 Score=14.67 Aligned_cols=122 Identities=10% Similarity=0.103 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC------CCCC--C
Q ss_conf 5411567775444456656555542022011221223357889999751234434332000000112------3332--2
Q gi|254781160|r 90 KTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL------KNWD--H 161 (245)
Q Consensus 90 k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l------~~~~--~ 161 (245)
--+.|..-++.+-++|++.|.+-.-. .....+.++.++.+.. |.-- .+.+..-|+..- +..- .
T Consensus 71 E~~~M~~di~~~~~~GadGvVfG~L~--~dg~iD~~~~~~Li~~-a~~~------~vTFHRAfD~~~d~~~al~~L~~lG 141 (256)
T 1twd_A 71 EFAAILEDVRTVRELGFPGLVTGVLD--VDGNVDXPRXEKIXAA-AGPL------AVTFHRAFDXCANPLYTLNNLAELG 141 (256)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCBC--TTSSBCHHHHHHHHHH-HTTS------EEEECGGGGGCSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEC--CCCCCCHHHHHHHHHH-HCCC------CEEEEEHHHHCCCHHHHHHHHHHCC
T ss_conf 99999999999998599813786788--8888549999999998-6446------7366112354088999999998669
Q ss_pred CCCCCCCCCHHCCCCCHHHHHCC-CCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 33321263000121102221003-678835999888888888999999957995586368874
Q gi|254781160|r 162 NCQIVFADETCGSENSLEKLHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRI 223 (245)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~I 223 (245)
...++-.--.......++.+... .......+++ -||.+.+.+..+.+.|. ..++++.+.
T Consensus 142 ~~rVLTSGg~~~a~~g~~~L~~L~~~a~~~iii~--GgGv~~~nv~~l~~tg~-~~~H~s~~~ 201 (256)
T 1twd_A 142 IARVLTSGQKSDALQGLSKIXELIAHRDAPIIXA--GAGVRAENLHHFLDAGV-LEVHSSAGA 201 (256)
T ss_dssp CCEEEECTTSSSTTTTHHHHHHHHTSSSCCEEEE--ESSCCTTTHHHHHHHTC-SEEEECCEE
T ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE--ECCCCHHHHHHHHHCCC-CEEEECCCC
T ss_conf 7868626898855667999999998359958996--26789899999997799-889978886
No 54
>>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} (A:)
Probab=27.62 E-value=41 Score=14.49 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=28.1
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCC-CCEEEEEE
Q ss_conf 3578988899997799879875302355-52389975
Q gi|254781160|r 36 LRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEY 71 (245)
Q Consensus 36 lRlk~Gd~i~i~dg~g~~~~~~I~~~~k-~~~~~i~~ 71 (245)
-+..+||.|...-.+|..|.|+|..+++ +..+.+..
T Consensus 12 ~~f~~Ge~VLarWsDg~fYpgtI~~v~~~~~~y~V~F 48 (66)
T 2eqj_A 12 CKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIF 48 (66)
T ss_dssp CCSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEEEE
T ss_conf 3116687799995078798888999716673699996
No 55
>>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus HB8} (A:)
Probab=27.57 E-value=33 Score=15.09 Aligned_cols=123 Identities=11% Similarity=0.096 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf 56777544445665655554202201122122335788999975123443433200000011233322333212630---
Q gi|254781160|r 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADE--- 170 (245)
Q Consensus 94 ~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~--- 170 (245)
.+..++.+.|.|++.+.+........ .-.++.++..|-...+.+.+..+.+.+.......+.+++..-
T Consensus 108 ~~~~~~~~~~~g~d~i~~~~~~~~~~---------~~~~~~~~~~g~~~i~~~~~~t~~~~i~~~~~~~~~~~~~~~~~g 178 (271)
T 1ujp_A 108 PERFFGLFKQAGATGVILPDLPPDED---------PGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTG 178 (271)
T ss_dssp HHHHHHHHHHHTCCEEECTTCCGGGC---------HHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC--
T ss_pred CHHHHHHHHHCCCEEEECCCHHHHHH---------HHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 22565677624965785143045556---------788866303662158873565406799999983987188604567
Q ss_pred HHC-----CCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf 001-----21102221003678835999888888888999999957995586368874004489
Q gi|254781160|r 171 TCG-----SENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 (245)
Q Consensus 171 ~~~-----~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA 229 (245)
..+ .....+.+.......++-+ .-+||.+..|.-.... |. ..|-.|..|.|....
T Consensus 179 ~~g~~~~~~~~~~~~i~~i~~~~~~pi--~vgGGI~~~~~a~~~a-GA-d~vVVGSAi~~~~~~ 238 (271)
T 1ujp_A 179 VTGMRERLPEEVKDLVRRIKARTALPV--AVGFGVSGKATAAQAA-VA-DGVVVGSALVRALEE 238 (271)
T ss_dssp ----------CCHHHHHHHHTTCCSCE--EEESCCCSHHHHHHHT-TS-SEEEECHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHC-CC-CEEEECHHHHHHHHH
T ss_conf 777654440368899888765136875--8756979889998746-89-989986899999983
No 56
>>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, ligase, metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A (A:1-89)
Probab=27.40 E-value=41 Score=14.46 Aligned_cols=27 Identities=7% Similarity=0.067 Sum_probs=23.2
Q ss_pred CCCCCEEEEEE-CCCCEEEEEEECCCCC
Q ss_conf 78988899997-7998798753023555
Q gi|254781160|r 38 MKEGDNILLFN-GKDGEWLSKISYVGKS 64 (245)
Q Consensus 38 lk~Gd~i~i~d-g~g~~~~~~I~~~~k~ 64 (245)
.|.||-|.+.| .-|.+++|+|..+.+.
T Consensus 11 YKv~e~VDarD~~~GAWFEA~Iv~Vtk~ 38 (89)
T 3db3_A 11 YKVNEYVDARDTNXGAWFEAQVVRVTRK 38 (89)
T ss_dssp SCTTCEEEEECTTTCCEEEEEEEEEEEC
T ss_pred EECCCEEEEEECCCCEEEEEEEEEEEEC
T ss_conf 8705568886577432589999999716
No 57
>>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-126)
Probab=25.70 E-value=43 Score=14.33 Aligned_cols=103 Identities=11% Similarity=0.093 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHCC---CCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 7798759987035---7898889999779987987530235552389975413555544313541344541156777544
Q gi|254781160|r 25 SGDQYHYLAHVLR---MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKS 101 (245)
Q Consensus 25 ~~~~~hHl~kVlR---lk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~~~~~~~~~~i~l~~~~~k~~~~~~ilqk~ 101 (245)
+++...+-.+|++ -..+-.|...|.++.+..+. ..- .....-+.++.++.-...++....+++.+
T Consensus 17 s~~~~~~~~~v~~~l~~~~~~~V~pVnp~~~~i~g~----------~~y--~sl~el~~~~D~v~i~~p~~~~~~~v~e~ 84 (126)
T 2csu_A 17 SNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGV----------KAY--KSVKDIPDEIDLAIIVVPKRFVKDTLIQC 84 (126)
T ss_dssp CSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTE----------ECB--SSTTSCSSCCSEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEECCCCCEECCE----------ECC--CCHHHCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 799986379999999847996189978998607987----------576--99888699989899997789989999999
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 445665655554202201122122335788999975123
Q gi|254781160|r 102 VEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140 (245)
Q Consensus 102 tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr 140 (245)
.++|+..+|....-.++..... -+.+.-+..++..||-
T Consensus 85 ~~~gi~~ii~~~~g~~e~~~~~-~~~~~~~~~~a~~~g~ 122 (126)
T 2csu_A 85 GEKGVKGVVIITAGFGETGEEG-KREEKELVEIAHKYGX 122 (126)
T ss_dssp HHHTCCEEEECCCSSTTSCHHH-HHHHHHHHHHHHHHTC
T ss_pred HHCCCCEEEEECCCCCCCCCCH-HHHHHHHHHHHHHCCC
T ss_conf 9849988997167766545410-6899999998862697
No 58
>>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} (A:)
Probab=25.02 E-value=15 Score=17.30 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=31.1
Q ss_pred EEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHH
Q ss_conf 9988888888899999995799558636887400448
Q gi|254781160|r 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 (245)
Q Consensus 192 i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ET 228 (245)
+-|-..||.|.+.+..+.+.|. ..|-+|..|.+++-
T Consensus 165 ~pi~a~GGi~~~~i~~~~~~Ga-dgv~vGs~i~~~~d 200 (221)
T 1yad_A 165 IPVIAIGGMTPDRLRDVKQAGA-DGIAVMSGIFSSAE 200 (221)
T ss_dssp SCEEEESSCCGGGHHHHHHTTC-SEEEESHHHHTSSS
T ss_pred CCEEECCCCCHHHHHHHHHHCC-CEEEEEHHHHCCCC
T ss_conf 7478647899999999998299-89997399877999
No 59
>>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} (A:)
Probab=24.86 E-value=45 Score=14.16 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=23.1
Q ss_pred HHCCCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf 703578988899997799879875302
Q gi|254781160|r 34 HVLRMKEGDNILLFNGKDGEWLSKISY 60 (245)
Q Consensus 34 kVlRlk~Gd~i~i~dg~g~~~~~~I~~ 60 (245)
.-|=++.||.|.|.+-++++|.++...
T Consensus 25 ~eLs~~~Gd~i~Vl~~~~~Ww~g~~~g 51 (74)
T 1j3t_A 25 NHLNFSKHDIITVLEQQENWWFGEVHG 51 (74)
T ss_dssp TBCCBCTTCEEEEEEECSSEEEEESTT
T ss_pred CCCCCCCCCEEEEEEECCCEEEEEECC
T ss_conf 990797999999999769979999899
No 60
>>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoreductase activator; 1.70A {Homo sapiens} (A:1-66)
Probab=24.85 E-value=45 Score=14.16 Aligned_cols=27 Identities=15% Similarity=0.467 Sum_probs=20.2
Q ss_pred HHCCCCCCCEEEEEE-CCCCEEEEEEEC
Q ss_conf 703578988899997-799879875302
Q gi|254781160|r 34 HVLRMKEGDNILLFN-GKDGEWLSKISY 60 (245)
Q Consensus 34 kVlRlk~Gd~i~i~d-g~g~~~~~~I~~ 60 (245)
.=|.++.||.|.|.+ .++++|.++...
T Consensus 26 ~eLs~~~Gd~i~vl~~~~~gW~~g~~~g 53 (66)
T 1ng2_A 26 SEMALSTGDVVEVVEKSESGWWFCQMKA 53 (66)
T ss_dssp TCCCBCTTCEEEEEECCTTSCCEEEECC
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECC
T ss_conf 8467889999999896699908878799
No 61
>>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} (A:)
Probab=24.81 E-value=46 Score=14.16 Aligned_cols=37 Identities=11% Similarity=-0.024 Sum_probs=28.0
Q ss_pred CCCCCCCEEEEEE-CCCCEEEEEEECCCCCCEEEEEEE
Q ss_conf 3578988899997-799879875302355523899754
Q gi|254781160|r 36 LRMKEGDNILLFN-GKDGEWLSKISYVGKSIRFKVEYQ 72 (245)
Q Consensus 36 lRlk~Gd~i~i~d-g~g~~~~~~I~~~~k~~~~~i~~~ 72 (245)
-++.+|+.|.... ++|..|.|+|..+..+..+.+...
T Consensus 7 ~~~~vG~~V~A~~s~Dg~~Y~a~I~~i~~~~~y~V~Fd 44 (156)
T 1ssf_A 7 GNSFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFD 44 (156)
T ss_dssp -CCSTTCEEEECSSCSSEEEEEEEEECCTTTEEEEECT
T ss_pred CCCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEC
T ss_conf 65778999999978999798689999868998999986
No 62
>>1uf2_K Structural protein P7; virus components, icosahedral virus; 3.50A {Rice dwarf virus} (K:)
Probab=24.71 E-value=36 Score=14.81 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=15.1
Q ss_pred EEEECCCCCCCHHHHHHHHHC
Q ss_conf 999888888888999999957
Q gi|254781160|r 191 AILIGPEGGYHSEEKETLHSL 211 (245)
Q Consensus 191 ~i~IGPEGGfs~~E~~~l~~~ 211 (245)
-++|--++=||.+|...|.+.
T Consensus 283 eiFi~~~~vFs~~E~s~l~el 303 (506)
T 1uf2_K 283 AVFINESEPFSDKERSELSEL 303 (506)
T ss_pred CEEECCCCCCCHHHHHHHHHH
T ss_conf 305504456563556667887
No 63
>>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=24.11 E-value=47 Score=14.07 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=24.4
Q ss_pred HHCCCCCCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf 7035789888999977998798753023555
Q gi|254781160|r 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 (245)
Q Consensus 34 kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~ 64 (245)
.=|.++.||.|.|..-.++.|.++....++.
T Consensus 32 ~eLs~~~Gd~i~V~~~~~gWw~~~~~~~g~~ 62 (79)
T 1x6b_A 32 DEVTLQQADVVLVLQQEDGWLYGERLRDGET 62 (79)
T ss_dssp SBCCCCTTEEEEEEEEETTEEEEEETTTCCE
T ss_pred CEEEECCCCEEEEEECCCCCEEEEECCCCCE
T ss_conf 9850817989999971377576699899999
No 64
>>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} (A:)
Probab=24.10 E-value=47 Score=14.07 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=16.8
Q ss_pred HCCCCCCCEEEEEE-CCCCEEEEEE
Q ss_conf 03578988899997-7998798753
Q gi|254781160|r 35 VLRMKEGDNILLFN-GKDGEWLSKI 58 (245)
Q Consensus 35 VlRlk~Gd~i~i~d-g~g~~~~~~I 58 (245)
=|-++.||.|.|.+ .+.+.|.|++
T Consensus 37 ELsf~~Gd~i~Vl~~~d~~Ww~g~~ 61 (62)
T 1g2b_A 37 EVTMKKGDILTLLNSTNKDWWKVEV 61 (62)
T ss_dssp BCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred EEEEECCCEEEEECCCCCCCEEEEC
T ss_conf 0367048699983488843088854
No 65
>>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A (A:)
Probab=23.84 E-value=47 Score=14.04 Aligned_cols=32 Identities=28% Similarity=0.229 Sum_probs=24.2
Q ss_pred HHCCCCCCCEEEEEE-CCCCEEEEEEECCCCCC
Q ss_conf 703578988899997-79987987530235552
Q gi|254781160|r 34 HVLRMKEGDNILLFN-GKDGEWLSKISYVGKSI 65 (245)
Q Consensus 34 kVlRlk~Gd~i~i~d-g~g~~~~~~I~~~~k~~ 65 (245)
.-|.++.||.|.|.+ .+++.|.+++...++..
T Consensus 16 ~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G 48 (58)
T 1zuy_A 16 SELPLKKGDVIYITREEPSGWSLGKLLDGSKEG 48 (58)
T ss_dssp TBCCBCTTCEEEEEEECTTSEEEEEESSCSCEE
T ss_pred CEEEECCCCEEEEEEECCCCEEEEEECCCCCEE
T ss_conf 887499999999999708996999989999899
No 66
>>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} (A:)
Probab=23.78 E-value=48 Score=14.03 Aligned_cols=144 Identities=13% Similarity=0.097 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf 1156777544445665655554202201-1221223357889999751234434332000000112333223332-----
Q gi|254781160|r 92 NRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQI----- 165 (245)
Q Consensus 92 ~~~~~ilqk~tELGV~~I~p~~~~rs~~-~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~----- 165 (245)
....+-++.+.++|++.+-....-++.. .+.+..+.-.-+.++|.+.|.+.+-++.....-..-.........+
T Consensus 128 ~~~~~sve~a~~~GAdaVk~lv~~g~dd~~e~~ql~~l~~v~~~~~~~glp~l~E~l~~~p~g~~~~~~~~p~~i~~a~r 207 (307)
T 3fok_A 128 RYTGYNVSSXVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAAQLPIXLEPFXSNWVNGKVVNDLSTDAVIQSVA 207 (307)
T ss_dssp CCCSCCHHHHHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 30247899999758997889987479985649999999999999997699669998751257765667778899999999
Q ss_pred ---------CCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHH---CCCCEEEECCCCCCCH----HHH
Q ss_conf ---------126300012110222100367883599988888888899999995---7995586368874004----489
Q gi|254781160|r 166 ---------VFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHS---LPFVTPLSLGPRILRS----DTA 229 (245)
Q Consensus 166 ---------~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~---~~~~~~vsLG~~ILR~----ETA 229 (245)
+-.+-........+.+ .......+.++-||-+.=.++-...++. .+.+..+..|.+|.-. -++
T Consensus 208 ~~~elGaDi~K~~~p~~~~~~~~~v-~~~~~~pvvilGG~~~~d~~~~l~~~~~A~~~~Ga~G~~~GRniwq~~~~dp~~ 286 (307)
T 3fok_A 208 IAAGLGNDSSYTWXKLPVVEEXERV-XESTTXPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLYPQDGDVAA 286 (307)
T ss_dssp HHHTCSSCCSSEEEEEECCTTHHHH-GGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSSCSSSCHHH
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHH-HHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHH
T ss_conf 9999688778614899807789999-980899789967998999999999999999857982898670126789889999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781160|r 230 AVAAMAL 236 (245)
Q Consensus 230 ~i~als~ 236 (245)
.+-+++.
T Consensus 287 ~~~al~~ 293 (307)
T 3fok_A 287 AVDTAAR 293 (307)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 67
>>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoreductase activator; 1.70A {Homo sapiens} (A:67-193)
Probab=23.74 E-value=48 Score=14.03 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=20.6
Q ss_pred HHCCCCCCCEEEEEE-CCCCEEEEEEE
Q ss_conf 703578988899997-79987987530
Q gi|254781160|r 34 HVLRMKEGDNILLFN-GKDGEWLSKIS 59 (245)
Q Consensus 34 kVlRlk~Gd~i~i~d-g~g~~~~~~I~ 59 (245)
.-|.++.||.|.|++ .++++|.+...
T Consensus 30 ~eLsf~~Gd~i~Vl~~~~~~Ww~~~~~ 56 (127)
T 1ng2_A 30 DEVSLLEGEAVEVIHKLLDGWWVIRKD 56 (127)
T ss_dssp TBCCBCTTCEEEEEECCTTSEEEEEET
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEEC
T ss_conf 142247999999979748984899989
No 68
>>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A (A:1-159)
Probab=23.65 E-value=30 Score=15.37 Aligned_cols=27 Identities=7% Similarity=0.174 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 156777544445665655554202201
Q gi|254781160|r 93 RLDYMIQKSVEMGMGAIRPVITRYTQN 119 (245)
Q Consensus 93 ~~~~ilqk~tELGV~~I~p~~~~rs~~ 119 (245)
..+.|++.+.+.|++.|+|-+.--|++
T Consensus 111 n~~~Ii~~A~~~g~dAihPGyGFLSEn 137 (159)
T 3glk_A 111 NVELIVDIAKRIPVQAVWAGWGHASEN 137 (159)
T ss_dssp CHHHHHHHHHHTTCSEEECCSSGGGGC
T ss_pred CHHHHHHHHHHHCCCEEECCCCCCCCC
T ss_conf 999999999996989997086453649
No 69
>>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=23.49 E-value=48 Score=14.00 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=25.0
Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEEC
Q ss_conf 57898889999779987987530235552389975413
Q gi|254781160|r 37 RMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSR 74 (245)
Q Consensus 37 Rlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~~~ 74 (245)
+.++||.+.+..|+-.--.+-|..++.+..+.......
T Consensus 17 ~F~~GDhVkVi~G~~~getGlVV~v~~d~v~i~SD~t~ 54 (69)
T 2do3_A 17 YFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTM 54 (69)
T ss_dssp SCCTTCEEEESSSTTTTCEEEEEEECSSCEEEEESSSC
T ss_pred CCCCCCEEEEECCEECCCCEEEEEEECCEEEEEECCCC
T ss_conf 05799838990646869628999993999999858999
No 70
>>2b5d_X Alpha-amylase; (beta/alpha)7 barrel, hydrolase; 2.20A {Thermotoga maritima MSB8} (X:1-410)
Probab=23.25 E-value=44 Score=14.22 Aligned_cols=25 Identities=16% Similarity=-0.079 Sum_probs=20.9
Q ss_pred EEEEECCCCCCCHHHHHHHHHCCCC
Q ss_conf 5999888888888999999957995
Q gi|254781160|r 190 VAILIGPEGGYHSEEKETLHSLPFV 214 (245)
Q Consensus 190 i~i~IGPEGGfs~~E~~~l~~~~~~ 214 (245)
...+--||||+++.=.+.+.++|+-
T Consensus 178 p~~~~~p~~~~~~~~~~~l~~~G~~ 202 (410)
T 2b5d_X 178 PRGIWLAECGYYQGLDLYLAQNNVE 202 (410)
T ss_dssp CSEEECGGGCBCTTHHHHHHHTTCC
T ss_pred CCEEECCCCCCCHHHHHHHHHCCCE
T ss_conf 9889647562267899999987975
No 71
>>3d4r_A Domain of unknown function from the PFAM-B_34464 family; NP_987166.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.20A {Methanococcus maripaludis} (A:1-98)
Probab=22.65 E-value=50 Score=13.89 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=19.8
Q ss_pred CCCCCCEEEECCCCCCCCEEEECHH
Q ss_conf 7677877740854478888998779
Q gi|254781160|r 3 IHSHLKRLFVDFPLCIKTQGKASGD 27 (245)
Q Consensus 3 ~~~~m~R~f~~~~l~~~~~i~L~~~ 27 (245)
+-.++||+|++..+..+..+.++.+
T Consensus 18 ~~~kIPklYVEne~~e~~KVvIE~~ 42 (98)
T 3d4r_A 18 QGXKIPKIYVEGELNDGDRVAIEKD 42 (98)
T ss_dssp TTCCCCEEEEETCCCSSCEEEEEGG
T ss_pred CCCCCCEEEEEEECCCCCEEEEEEC
T ss_conf 3365646999600166757999608
No 72
>>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} (A:22-251)
Probab=22.10 E-value=23 Score=16.08 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=35.9
Q ss_pred EEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99888888888999999957995586368874004489999999999
Q gi|254781160|r 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 (245)
Q Consensus 192 i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~ 238 (245)
+-|-..||.+..+.-.+.+.|. -.|-.|..|.+++.-.-.+-.+..
T Consensus 182 vpi~a~GGI~~~~~~~~~~aGa-d~VvvGsaI~~a~d~~~~~~~l~~ 227 (230)
T 1i4n_A 182 TVVVAESGIKDPRELKDLRGKV-NAVLVGTSIMKAENPRRFLEEMRA 227 (230)
T ss_dssp SEEEEESCCCCGGGHHHHTTTC-SEEEECHHHHHCSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHCC-CEEEECHHHHCCCCHHHHHHHHHH
T ss_conf 9899779999999999998089-999988787679998999999982
No 73
>>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP binding, purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A (A:1-97)
Probab=22.05 E-value=23 Score=16.06 Aligned_cols=29 Identities=17% Similarity=0.400 Sum_probs=23.3
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 99988888888899999995799558636887
Q gi|254781160|r 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222 (245)
Q Consensus 191 ~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ 222 (245)
+++||||.=...-=.+.|+++|. +| +||.
T Consensus 65 lvviGPE~pL~~Gl~D~l~~~Gi--~v-fGPs 93 (97)
T 2yw2_A 65 FTIVGPEAPLVEGIVDEFEKRGL--KI-FGPN 93 (97)
T ss_dssp EEEECSHHHHHTTHHHHHHHTTC--CE-ESCC
T ss_pred EEEECCCHHHHHHHHHHHHHCCC--CE-ECCH
T ss_conf 99989857899999999986698--17-5236
No 74
>>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, fatty acid synthesis (type 2), structural genomics; 1.75A {Homo sapiens} PDB: 2vcy_A (A:150-304)
Probab=21.89 E-value=52 Score=13.79 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=24.2
Q ss_pred HHHHHHHHCCCCCCCEEEEEECCCCEEEEEEE
Q ss_conf 87599870357898889999779987987530
Q gi|254781160|r 28 QYHYLAHVLRMKEGDNILLFNGKDGEWLSKIS 59 (245)
Q Consensus 28 ~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~ 59 (245)
-++++.+..++++||.|.+.-+.|....+-+.
T Consensus 6 a~~~l~~~~~~~~g~~VlV~ga~g~vG~~~i~ 37 (155)
T 1zsy_A 6 AYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQ 37 (155)
T ss_dssp HHHHHHHSSCCCTTCEEEESSTTSHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 32111111234699742013343134205443
No 75
>>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} (A:)
Probab=21.85 E-value=46 Score=14.12 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=23.9
Q ss_pred HHCCCCCCCEEEEEE-CCCCEEEEEEECCCCCC
Q ss_conf 703578988899997-79987987530235552
Q gi|254781160|r 34 HVLRMKEGDNILLFN-GKDGEWLSKISYVGKSI 65 (245)
Q Consensus 34 kVlRlk~Gd~i~i~d-g~g~~~~~~I~~~~k~~ 65 (245)
.=|.+++||.|.|.+ .++++|.+++...++..
T Consensus 22 ~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G 54 (70)
T 2ecz_A 22 VEMSFRKGERITLLRQVDENWYEGRIPGTSRQG 54 (70)
T ss_dssp TBCCCCTTCBCEEEEEEETTEEEEEETTTTEEE
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECCCCCEE
T ss_conf 994798999999989718995999999999899
No 76
>>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (W:1-140)
Probab=21.73 E-value=25 Score=15.81 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=21.8
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCC
Q ss_conf 3578988899997799879875302355
Q gi|254781160|r 36 LRMKEGDNILLFNGKDGEWLSKISYVGK 63 (245)
Q Consensus 36 lRlk~Gd~i~i~dg~g~~~~~~I~~~~k 63 (245)
++++.||.|.|..|+..-=.++|..+.+
T Consensus 67 ~~i~kGD~V~Vi~G~dkGk~G~V~~V~~ 94 (140)
T 3bbo_W 67 RHVKVGDTVKVISGGEKGKIGEISKIHK 94 (140)
T ss_dssp CCSCCSSCEEECSSSSTTCCCSCCCCCS
T ss_pred EECCCCCEEEEEECCCCCCEEEEEEEEC
T ss_conf 0105899999914789993215999987
No 77
>>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} (A:410-468)
Probab=21.72 E-value=52 Score=13.77 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=25.9
Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEE
Q ss_conf 7898889999779987987530235552389975
Q gi|254781160|r 38 MKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 (245)
Q Consensus 38 lk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~ 71 (245)
.++|+.....--+|..|.|.|.++.++..+.+..
T Consensus 3 ~~vG~~c~a~~~Dg~wYRa~I~~i~~~~~~~V~f 36 (59)
T 3bdl_A 3 PRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFY 36 (59)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEEEETTEEEEEE
T ss_pred CCCCCEEEEEECCCCEEEEEEEEECCCCCEEEEE
T ss_conf 7655089999558978999999856899558999
No 78
>>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A (A:)
Probab=21.28 E-value=53 Score=13.71 Aligned_cols=33 Identities=24% Similarity=0.215 Sum_probs=24.8
Q ss_pred HCCCCCCCEEEEEE-CCCCEEEEEEECCCCCCEE
Q ss_conf 03578988899997-7998798753023555238
Q gi|254781160|r 35 VLRMKEGDNILLFN-GKDGEWLSKISYVGKSIRF 67 (245)
Q Consensus 35 VlRlk~Gd~i~i~d-g~g~~~~~~I~~~~k~~~~ 67 (245)
=|.++.||.|.|.+ .++++|.++....++...+
T Consensus 19 eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~ 52 (69)
T 1ruw_A 19 ELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWV 52 (69)
T ss_dssp BCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEE
T ss_pred EEEECCCCEEEEEECCCCCEEEEEECCCCCEEEE
T ss_conf 8818999999996726898699999999989999
No 79
>>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=20.89 E-value=54 Score=13.66 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=29.0
Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCC-CCEEEEEEEE
Q ss_conf 3578988899997799879875302355-5238997541
Q gi|254781160|r 36 LRMKEGDNILLFNGKDGEWLSKISYVGK-SIRFKVEYQS 73 (245)
Q Consensus 36 lRlk~Gd~i~i~dg~g~~~~~~I~~~~k-~~~~~i~~~~ 73 (245)
-...+||.|.+-..+|..|.|+|..++. +-.+.+....
T Consensus 8 ~~f~~Ge~VlarW~Dg~~Y~a~i~~v~~~~~~y~V~F~D 46 (68)
T 2e5p_A 8 PRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFED 46 (68)
T ss_dssp CCCCTTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETT
T ss_pred CCCCCCCEEEEEEECCCEEEEEEEEEECCCCEEEEEEEC
T ss_conf 763358889999306878766899984479789999916
No 80
>>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} (A:)
Probab=20.52 E-value=49 Score=13.92 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=35.8
Q ss_pred EEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 99888888888999999957995586368874004489999999999
Q gi|254781160|r 192 ILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQ 238 (245)
Q Consensus 192 i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~ 238 (245)
+.|-.-||.+++.+..+.+.|. ..|-+|..|.+++...-.+-.+..
T Consensus 171 ~~v~~~GGi~~~d~~~~~~~Ga-dgv~vGsai~~~~dp~~~~~~~~~ 216 (220)
T 2fli_A 171 FDIEVDGGVDNKTIRACYEAGA-NVFVAGSYLFKASDLVSQVQTLRT 216 (220)
T ss_dssp CEEEEESSCCTTTHHHHHHHTC-CEEEESHHHHTSSCHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHCCC-CEEEECHHHHCCCCHHHHHHHHHH
T ss_conf 3899868679889999998799-999977587379999999999999
No 81
>>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain protein, rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A (A:65-120)
Probab=20.14 E-value=56 Score=13.56 Aligned_cols=31 Identities=6% Similarity=-0.035 Sum_probs=27.2
Q ss_pred HHCCCCCCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf 7035789888999977998798753023555
Q gi|254781160|r 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKS 64 (245)
Q Consensus 34 kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~ 64 (245)
..+.+++|..+.+-+..|..+.+.|++++..
T Consensus 17 ~~~~le~G~~l~~~~~~G~~~~~~V~ei~~~ 47 (56)
T 3cgm_A 17 EDAEVVPGAQFYAQDMEGNPMPLTVVAVEGE 47 (56)
T ss_dssp TTSCCCTTCEEEEEETTTEEEEEEEEEEETT
T ss_pred CCCCCCCCCEEEECCCCCCEEEEEEEEECCC
T ss_conf 4344322633551067786278999998588
No 82
>>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=20.11 E-value=56 Score=13.55 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=28.0
Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEE
Q ss_conf 5789888999977998798753023555-23899754
Q gi|254781160|r 37 RMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQ 72 (245)
Q Consensus 37 Rlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~ 72 (245)
+..+|+.|.+.-.+|..|.|+|..+++. -.+.+...
T Consensus 7 ~f~~Ge~VlarWsDg~~Y~ati~~v~~~~~~y~V~Fe 43 (63)
T 2e5q_A 7 GLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFE 43 (63)
T ss_dssp CCCTTCEEEEECTTSCEEEEEECCCCSTTSEEEEEET
T ss_pred CCCCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEC
T ss_conf 7645877999952887988868886266637999956
No 83
>>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* (A:1-107)
Probab=20.03 E-value=41 Score=14.42 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 115677754444566565555420220112212233578899997512344
Q gi|254781160|r 92 NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILT 142 (245)
Q Consensus 92 ~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~ 142 (245)
...+.+++.+-+.|++.|+|-+.--|++..+ -++|++.|-.|
T Consensus 64 l~~~~Ii~~A~~~g~dAihPGyGflSEn~~f---------a~~~~~agi~F 105 (107)
T 3hbl_A 64 LNIERIIDVAKQANVDAIHPGYGFLSENEQF---------ARRCAEEGIKF 105 (107)
T ss_dssp TCHHHHHHHHHHTTCSEEECTTTTSTTCHHH---------HHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHCCCEEECCCCCCCCCHHH---------HHHHHHCCCEE
T ss_conf 5999999999997929996584403249999---------99999879979
Done!