HHsearch results for GI: 254781160 and protein with PDBid: 2ha8_A
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=91.62 E-value=0.26 Score=27.75 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=62.2
Q ss_pred CCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCC
Q ss_conf 443135413-4454115677754444566565555420220112212233578899997512344343320-00000112
Q gi|254781160|r 79 QSDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLL 156 (245)
Q Consensus 79 ~~~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~-~~~l~~~l 156 (245)
.+++.++.- +-++..+-.|++-+.-+||+.++ ....+.... . .++. +..+.-.++|.+.. ..++.+++
T Consensus 24 ~~~l~vvld~i~dP~NlG~IiRta~afGv~~vi--v~~~~~~~~---~----~~~~-~s~g~~~~i~~~~~~~~~~~~~l 93 (184)
T 2ha8_A 24 ISRLIVVASLIDKPTNLGGLCRTCEVFGASVLV--VGSLQCISD---K----QFQH-LSVSAEQWLPLVEVKPPQLIDYL 93 (184)
T ss_dssp CCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEE--ESCGGGGGS---H----HHHH-HHTTGGGTSCEEECCGGGHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE--CCCCCCCCC---H----HHHH-HCCCCCCEECCCCCCCHHHHHHH
T ss_conf 798799981788803799999999981997795--076445687---4----7776-40553102021134514689999
Q ss_pred CCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHH
Q ss_conf 333223332126300012110222100367883599988888-8888999999
Q gi|254781160|r 157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETL 208 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l 208 (245)
.........+++-+...... .+......+++++++|.|+ |.|+++.+.+
T Consensus 94 ~~~k~~g~~vv~~~~~~~~~---~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~ 143 (184)
T 2ha8_A 94 QQKKTEGYTIIGVEQTAKSL---DLTQYCFPEKSLLLLGNEREGIPANLIQQL 143 (184)
T ss_dssp HHHHHTTCEEEEECCCTTCE---EGGGCCCCSSEEEEECBTTTBSCHHHHTTC
T ss_pred HHHHHCCCEEEEECCCCCCC---CCCCCCCCCCCEEEECCCCCCCCHHHHHHC
T ss_conf 99875596898731324553---332111468856886765578899999858