Query         gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 245
No_of_seqs    113 out of 2755
Neff          7.5 
Searched_HMMs 23785
Date          Wed Jun  1 01:33:04 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781160.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1vhy_A Hypothetical protein HI 100.0       0       0  444.4  19.8  236    4-244     2-245 (257)
  2 1vhk_A Hypothetical protein YQ 100.0       0       0  436.8  17.4  239    5-244     1-258 (268)
  3 3kw2_A Probable R-RNA methyltr 100.0       0       0  423.4  15.3  238    4-245     2-247 (257)
  4 2egv_A UPF0088 protein AQ_165; 100.0       0       0  399.0  19.9  222    7-239     1-228 (229)
  5 1v6z_A Hypothetical protein TT 100.0       0       0  398.1  16.6  224    5-243     1-228 (228)
  6 1z85_A Hypothetical protein TM 100.0       0       0  392.1  17.0  222    4-243    10-233 (234)
  7 2qwv_A UPF0217 protein VC_A105  94.3   0.033 1.4E-06   33.6   3.6   90  144-240   114-204 (208)
  8 2qmm_A UPF0217 protein AF_1056  94.0    0.13 5.5E-06   29.7   6.3   82  149-237   111-192 (197)
  9 1v2x_A TRNA (GM18) methyltrans  92.9   0.076 3.2E-06   31.3   3.6  117   78-209    19-137 (194)
 10 2ha8_A TAR (HIV-1) RNA loop bi  91.6    0.26 1.1E-05   27.7   5.1  117   79-208    24-143 (184)
 11 1to0_A Hypothetical UPF0247 pr  90.5    0.52 2.2E-05   25.8   5.7   77  156-237    64-145 (167)
 12 1vh0_A Hypothetical UPF0247 pr  86.1     1.2 5.2E-05   23.4   5.2   76  157-237    67-147 (161)
 13 1o6d_A Hypothetical UPF0247 pr  86.1    0.77 3.2E-05   24.7   4.2   76  157-237    60-139 (163)
 14 3ic6_A Putative methylase fami  83.9     1.3 5.4E-05   23.3   4.5  159   80-240    16-193 (223)
 15 2v3j_A Essential for mitotic g  75.2     2.3 9.7E-05   21.6   3.5  114  122-242   132-250 (258)
 16 1ipa_A RRMH, RNA 2'-O-ribose m  75.0     4.3 0.00018   19.8   4.9  114   81-210   116-231 (274)
 17 1gz0_A Hypothetical tRNA/RRNA   75.0     1.6 6.6E-05   22.7   2.6  136   82-234   107-245 (253)
 18 1k3r_A Conserved protein MT000  73.7     4.7  0.0002   19.6   5.4   54  183-240   206-260 (268)
 19 1zjr_A TRNA (guanosine-2'-O-)-  69.6     2.7 0.00011   21.1   2.8  140   79-235    23-166 (211)
 20 3nk6_A 23S rRNA methyltransfer  69.2     3.7 0.00015   20.3   3.4  114   82-208   121-235 (277)
 21 2i6d_A RNA methyltransferase,   58.8     7.6 0.00032   18.2   3.4  114   82-207   105-219 (257)
 22 1x7o_A Avirb, rRNA methyltrans  58.3     7.2  0.0003   18.4   3.2  115   81-209   126-247 (287)
 23 3onp_A TRNA/RRNA methyltransfe  54.3     4.8  0.0002   19.5   1.8  138   82-235     6-156 (249)
 24 3e5y_A TRMH family RNA methylt  51.4     5.9 0.00025   19.0   1.8  112   81-207     5-119 (160)
 25 1vq8_T 50S ribosomal protein L  50.3      10 0.00044   17.3   3.0   50   21-70     25-76  (120)
 26 2wwb_L 60S ribosomal protein L  45.9      15 0.00062   16.4   3.3   52   20-71     31-84  (127)
 27 1ns5_A Hypothetical protein YB  45.3      15 0.00063   16.3   5.8   46  187-237    95-140 (155)
 28 3ilk_A Uncharacterized tRNA/RR  45.2      12 0.00052   16.9   2.7  144   82-237     8-156 (244)
 29 3kty_A Probable methyltransfer  45.1      15 0.00063   16.3   3.9   32   81-112    10-42  (173)
 30 3gg8_A Pyruvate kinase; malari  43.0     4.5 0.00019   19.7   0.2   71   37-110   151-226 (511)
 31 3dcm_X AdoMet, uncharacterized  40.3      18 0.00075   15.8   3.1   55  186-245   132-188 (192)
 32 1b34_A Protein (small nuclear   40.0      18 0.00076   15.8   5.6   66   32-97      3-68  (119)
 33 2zkr_t 60S ribosomal protein L  39.9      12 0.00049   17.0   1.9   50   23-72     33-85  (145)
 34 2e6z_A Transcription elongatio  38.4      16 0.00069   16.1   2.5   27   38-64      8-34  (59)
 35 2e5p_A Protein PHF1, PHD finge  36.8      20 0.00085   15.5   4.5   34   37-70      9-43  (68)
 36 3khd_A Pyruvate kinase; malari  36.5      10 0.00044   17.3   1.2   70   37-110   160-235 (520)
 37 3n4j_A RNA methyltransferase;   35.8      21 0.00087   15.4   2.7   30   81-110     4-34  (165)
 38 2equ_A PHD finger protein 20-l  35.3      21  0.0009   15.3   4.2   36   36-71      8-43  (74)
 39 1sf8_A Chaperone protein HTPG;  34.8      22 0.00091   15.3   4.0   37  186-224    34-70  (126)
 40 3cw1_D Small nuclear ribonucle  34.3      22 0.00093   15.2   4.0   38   33-70      7-44  (126)
 41 2qqr_A JMJC domain-containing   31.5      25   0.001   14.9   4.5   36   37-72      5-40  (118)
 42 2eqj_A Metal-response element-  30.2      26  0.0011   14.8   4.5   36   36-71     12-48  (66)
 43 2qiw_A PEP phosphonomutase; NP  29.6      26  0.0011   14.7   3.0   37  189-226   206-242 (255)
 44 1mxs_A KDPG aldolase; 2-keto-3  29.1      27  0.0011   14.7   2.4   95  127-227   107-201 (225)
 45 3iwp_A Copper homeostasis prot  28.4      18 0.00076   15.8   1.3  119   92-222   111-240 (287)
 46 1wa3_A 2-keto-3-deoxy-6-phosph  28.3      22 0.00092   15.2   1.8   97  129-232    94-190 (205)
 47 1w8s_A FBP aldolase, fructose-  27.9      28  0.0012   14.5   3.6  140   94-239    94-249 (263)
 48 1gcq_C VAV proto-oncogene; SH3  26.8      29  0.0012   14.4   4.3   29   35-63     26-56  (70)
 49 2v82_A 2-dehydro-3-deoxy-6-pho  26.7      25   0.001   14.9   1.8   92  129-226    91-182 (212)
 50 1uf2_K Structural protein P7;   24.7      25  0.0011   14.8   1.5   21  191-211   283-303 (506)
 51 1a53_A IGPS, indole-3-glycerol  24.5      31  0.0013   14.2   2.0   32  196-228   208-240 (247)
 52 1twd_A Copper homeostasis prot  24.3      17  0.0007   16.0   0.6  123   91-225    72-203 (256)
 53 1d3b_A Protein (small nuclear   23.7      34  0.0014   14.0   5.2   63   33-95      7-69  (75)
 54 1wgs_A MYST histone acetyltran  23.2      34  0.0014   14.0   3.5   26   37-62     12-37  (133)
 55 1i9g_A Hypothetical protein RV  23.2      34  0.0014   14.0   3.7   24   37-60      6-29  (280)
 56 2eqm_A PHD finger protein 20-l  23.1      35  0.0015   13.9   3.4   27   36-62     18-44  (88)
 57 3d4r_A Domain of unknown funct  23.0      35  0.0015   13.9   2.5   26    3-28     18-43  (169)
 58 1xi6_A Extragenic suppressor;   22.9      35  0.0015   13.9   2.0   10   29-38     59-68  (262)
 59 3g89_A Ribosomal RNA small sub  22.6      35  0.0015   13.9   3.1   29   80-110   105-133 (249)
 60 1w8g_A YGGS, hypothetical UPF0  22.4      36  0.0015   13.9   2.2   22   85-107    31-52  (234)
 61 3db3_A E3 ubiquitin-protein li  22.3      36  0.0015   13.8   3.5   27   38-64     11-38  (161)
 62 2yw3_A 4-hydroxy-2-oxoglutarat  22.3      36  0.0015   13.8   3.5  103  127-235    92-194 (207)
 63 1nkv_A Hypothetical protein YJ  22.1      15 0.00063   16.3  -0.1   47    5-51      1-48  (256)
 64 2kbt_A Chimera of proto-oncoge  21.8      37  0.0015   13.8   3.5   25   34-58     20-46  (142)

No 1  
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=100.00  E-value=0  Score=444.35  Aligned_cols=236  Identities=27%  Similarity=0.388  Sum_probs=204.7

Q ss_pred             CCCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEE-ECCCCCCCC
Q ss_conf             6778777408544788889987798759987035789888999977998798753023555-23899754-135555443
Q gi|254781160|r    4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQ-SRSQTKQSD   81 (245)
Q Consensus         4 ~~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~-~~~~~~~~~   81 (245)
                      -|||||||++.++..++++.|+++++|||.||||+++||.|.|+||+|+.|.|+|++++|+ +.+++... ...+.++++
T Consensus         2 ~Mr~pR~y~~~~l~~~~~i~L~~~~~hHl~kVLRlk~Gd~I~v~dg~G~~~~a~I~~~~k~~~~~~i~~~~~~~~~~~~~   81 (257)
T 1vhy_A            2 SLRIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELADKESHLK   81 (257)
T ss_dssp             ---CCEEECSSCCTTCSEEECCHHHHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEECCCEECCCCCSSC
T ss_pred             CCCCCEEEECCCCCCCCEEECCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEECCCHHHCCCCCEE
T ss_conf             87885798686568999898598998899983838999999999798999999999866863763100001211467404


Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             135413445411567775444456656555542022011------22122335788999975123443433200000011
Q gi|254781160|r   82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL  155 (245)
Q Consensus        82 i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~------~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~  155 (245)
                      ++|+++++|+++|||+|||+|||||++|+|+.++||+.+      .+|++||++|+++|||||||+++|+|.++.+|+++
T Consensus        82 i~l~~~l~K~~~~~~il~k~tELGV~~I~p~~s~rs~~~~~~~~~~~k~~r~~~I~~eA~eQsgr~~lP~I~~~~~l~~~  161 (257)
T 1vhy_A           82 IHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDW  161 (257)
T ss_dssp             EEEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHH
T ss_pred             EEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf             89998402338899999999974876899997102335465667887699999999999986599767865410038999


Q ss_pred             CCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf             23332233321263000121102221003678835999888888888999999957995586368874004489999999
Q gi|254781160|r  156 LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA  235 (245)
Q Consensus       156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als  235 (245)
                      +...+......+.+.   .......+ .....++++++||||||||++|+++|+++|| ++++||++|||||||+|+|+|
T Consensus       162 ~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~-~~vsLG~~ILR~ETA~i~als  236 (257)
T 1vhy_A          162 CAENDGALKLNLHPR---AHYSIKTL-PTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAIS  236 (257)
T ss_dssp             HTCCSSCEEEEECTT---CCCBGGGC-CCCCTTCEEEEECCTTCCCHHHHHHHHHTTC-EEEBCCSSCCCHHHHHHHHHH
T ss_pred             HHHCCCCCCHHHHHH---HHHHHHHH-HHHCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHH
T ss_conf             861544421011024---44456666-5303686589985777889899999998798-783268981668879999999


Q ss_pred             HHHHHHCCC
Q ss_conf             999984786
Q gi|254781160|r  236 LVQAICGDW  244 (245)
Q Consensus       236 ~~~~~~g~~  244 (245)
                      ++++++|||
T Consensus       237 ~~~~~~g~~  245 (257)
T 1vhy_A          237 ALQICFGDL  245 (257)
T ss_dssp             HHHHHHSGG
T ss_pred             HHHHHHCCC
T ss_conf             999984865


No 2  
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=100.00  E-value=0  Score=436.82  Aligned_cols=239  Identities=24%  Similarity=0.316  Sum_probs=206.1

Q ss_pred             CCCCEEEEC---CCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCC-CCC
Q ss_conf             778777408---544788889987798759987035789888999977998798753023555-238997541355-554
Q gi|254781160|r    5 SHLKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQ-TKQ   79 (245)
Q Consensus         5 ~~m~R~f~~---~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~-~~~   79 (245)
                      |+|+|||++   .++..+.++.|+++++|||.||||+++||.|.++||+|..|.|+|++++|+ +.+.+......+ .++
T Consensus         1 M~~~r~fi~~~~~~l~~~~~i~L~~~~~hHl~kVLR~k~Gd~i~v~dg~G~~~~a~I~~i~k~~~~~~~~~~~~~~~~~~   80 (268)
T 1vhk_A            1 MSLQRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELP   80 (268)
T ss_dssp             ---CEEECSSCHHHHHSSSSEEEESHHHHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEEECCCCCCCS
T ss_pred             CCCCEEEECCCHHHCCCCCEEEECHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEEECCCCCCCC
T ss_conf             99748996788567156997996889988999707889999999992899889999999506743344432002466897


Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             43135413445411567775444456656555542022011------221223357889999751234434332000000
Q gi|254781160|r   80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE  153 (245)
Q Consensus        80 ~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~------~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~  153 (245)
                      ++++|+++++|+++|||+|||+|||||++|+|+.++||+.+      ..+.+||++|+++|||||||+|+|+|..+.+|+
T Consensus        81 ~~i~L~~~l~k~~~~e~ii~katELGV~~I~p~~sers~~~~~~~~~~~k~eR~~~ii~eA~eQsgr~~lP~I~~~~~l~  160 (268)
T 1vhk_A           81 IKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQ  160 (268)
T ss_dssp             SEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHH
T ss_pred             CCEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH
T ss_conf             42579984216752888998878327256781010301221222055640999999999999971999876797436999


Q ss_pred             CCCCCCCCCCCCCCCCCHHCCCCCHH----HHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf             11233322333212630001211022----21003678835999888888888999999957995586368874004489
Q gi|254781160|r  154 FLLKNWDHNCQIVFADETCGSENSLE----KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA  229 (245)
Q Consensus       154 ~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA  229 (245)
                      ++++........+++++.........    ........++++++||||||||++|+++|+++|| ++|+||++|||||||
T Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~IGPEGGfs~~Ei~~l~~~g~-~~v~LG~~ILR~ETA  239 (268)
T 1vhk_A          161 QLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDG-VTCGLGPRILRTETA  239 (268)
T ss_dssp             HHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHHHHHHTTC-EEECCCSSCCCTTTH
T ss_pred             HHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHH
T ss_conf             9997286679489974200234424678888764347981999983898899999999997899-997789981457749


Q ss_pred             HHHHHHHHHHHH----CCC
Q ss_conf             999999999984----786
Q gi|254781160|r  230 AVAAMALVQAIC----GDW  244 (245)
Q Consensus       230 ~i~als~~~~~~----g~~  244 (245)
                      +|+|+|++++++    |||
T Consensus       240 ~i~als~i~~~~~~~~g~~  258 (268)
T 1vhk_A          240 PLYALSAISYQTELLRGDQ  258 (268)
T ss_dssp             HHHHHHHHHHHHHTCC---
T ss_pred             HHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999988747775


No 3  
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=100.00  E-value=0  Score=423.37  Aligned_cols=238  Identities=21%  Similarity=0.293  Sum_probs=199.9

Q ss_pred             CCCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCC-CCCCC
Q ss_conf             6778777408544788889987798759987035789888999977998798753023555-238997541355-55443
Q gi|254781160|r    4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQ-TKQSD   81 (245)
Q Consensus         4 ~~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~-~~~~~   81 (245)
                      .|+||+||.++ +  +.++.|+++++|||.||||+++||.|.++||+|..|.|+|++++++ +.+.+......+ ..+++
T Consensus         2 ~m~l~~Fy~~~-~--~~~~~L~~~~~hHl~kVLRl~~Gd~i~v~dg~G~~~~~~I~~i~k~~~~~~i~~~~~~~~~~~~~   78 (257)
T 3kw2_A            2 SLSLPLFYAPD-I--EQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQKPWRDR   78 (257)
T ss_dssp             ---CCEEECTT-T--TTCSBCCHHHHHHHHTTSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECCCSSCSC
T ss_pred             CCCCCEEECCC-C--CCCCEECHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCCE
T ss_conf             84553687899-8--76661798999899965768999989999797988999999903875999862022456888864


Q ss_pred             CEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             135413445-4115677754444566565555420220112212233578899997512344343320000001123332
Q gi|254781160|r   82 VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD  160 (245)
Q Consensus        82 i~l~~~~~k-~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~  160 (245)
                      ++|+++++| +++|||++||+|||||++|+|+.++||+++.++.+||++|+++|||||||+++|+|..+.+|+++++..+
T Consensus        79 i~l~~a~~k~~~r~d~ilqk~tELGV~~I~p~~s~~s~~~~~~~~R~~~i~~ea~eQs~r~~~P~I~~~~~l~~~l~~~~  158 (257)
T 3kw2_A           79 ITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADTP  158 (257)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCC
T ss_conf             89997244441079999878776184489951123203320378899999999999727553867715548999997470


Q ss_pred             CCCCCCCCCCHHCCCCC-----HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf             23332126300012110-----2221003678835999888888888999999957995586368874004489999999
Q gi|254781160|r  161 HNCQIVFADETCGSENS-----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA  235 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als  235 (245)
                      .....++++........     ..........++++++||||||||++|+++|+++|| ++|+||++|||||||+|+|+|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~IGPEGGfs~~Ei~~l~~~g~-~~vsLG~~ILRtETA~i~als  237 (257)
T 3kw2_A          159 KAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEGDFSPSEVESALLAGF-APVSLGESRLRTETAGLVACQ  237 (257)
T ss_dssp             TTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTTCCCHHHHHHHHHHTC-EEECCCSSCCCHHHHHHHHHH
T ss_pred             CCCCCEECHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHH
T ss_conf             1242120001320002233200121134236881799988998999999999998799-898679982557869999999


Q ss_pred             HHHHHHCCCC
Q ss_conf             9999847869
Q gi|254781160|r  236 LVQAICGDWY  245 (245)
Q Consensus       236 ~~~~~~g~~~  245 (245)
                      ++++++|+|-
T Consensus       238 ~l~~L~~~~~  247 (257)
T 3kw2_A          238 WIHTLQACYR  247 (257)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHH
T ss_conf             9999986640


No 4  
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=100.00  E-value=0  Score=399.02  Aligned_cols=222  Identities=16%  Similarity=0.233  Sum_probs=189.2

Q ss_pred             CCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCCCCCCCCEEE
Q ss_conf             8777408544788889987798759987035789888999977998798753023555-238997541355554431354
Q gi|254781160|r    7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYI   85 (245)
Q Consensus         7 m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~~~~~~i~l~   85 (245)
                      |||||+++  ..++.+.|+++++||+ ||||+++||.|.++|+ |+.|.|+|++++++ +.+++......+.+++.++|+
T Consensus         1 M~~f~~~~--~~~~~~~l~~~~~~Hi-kVlR~k~gd~i~v~~~-g~~~~~~I~~~~k~~~~~~i~~~~~~~~~~~~i~l~   76 (229)
T 2egv_A            1 MHVFYSEE--RRGNLLILREGEVKHF-RVRRIEKDEEFGVIHE-GKIYVCKVRREDKREISCEIVEELETKLPPKDITLY   76 (229)
T ss_dssp             CCEEECSC--EETTEEEEETHHHHHH-HHTTCCTTCCEEEEET-TEEEEEEEEEECSSEEEEEEEEECCCCCCSSEEEEE
T ss_pred             CCEEECCC--CCCCEEEECCCCEEEE-EEEECCCCCEEEEEEC-CEEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEE
T ss_conf             98994788--8799899770000577-8984589999999949-919999999943880899985402467998742899


Q ss_pred             ECCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             134454-11567775444456656555542022011----2212233578899997512344343320000001123332
Q gi|254781160|r   86 FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNT----HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD  160 (245)
Q Consensus        86 ~~~~k~-~~~~~ilqk~tELGV~~I~p~~~~rs~~~----~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~  160 (245)
                      ++++|+ ++|||+|||+|||||++|+|+.|+||+.+    .+|++||++|+++|||||||+++|.|..|.+|+++++..+
T Consensus        77 ~~~~k~~~~~e~ilek~tELGV~~i~p~~sers~~~~~~~~~k~eR~~~ii~eA~~Qs~r~~~p~i~~~~~l~~~l~~~~  156 (229)
T 2egv_A           77 QSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSDLIPESE  156 (229)
T ss_dssp             EECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCCEECCCEEGGGCCCCSS
T ss_pred             EECCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             83211045799999998881822999874330210137787789999999999861215677875324567999985343


Q ss_pred             CCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             2333212630001211022210036788359998888888889999999579955863688740044899999999999
Q gi|254781160|r  161 HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA  239 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~  239 (245)
                      ....+..+++.   .   .........++++++||||||||++|+++|.++|| .+++||++|||||||+++|+|+++.
T Consensus       157 ~~~~~~~~~~~---~---~~~~~~~~~~~~~i~IGPEGGfs~~E~~~l~~~g~-~~v~LG~~ILR~ETA~i~als~l~~  228 (229)
T 2egv_A          157 ENIILDNFYEG---V---KPKDVNLEAKTYSVVVGPEGGFSKRESQILREKGF-KSVLLEPYTLRTETAVVSIVSILMN  228 (229)
T ss_dssp             EEEEECTTSCC---B---CGGGSCTTCSEEEEEECCTTCCCHHHHHHHHHTTC-EEECCSSSCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHC---C---CCHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf             11111223310---3---52123320254158980788999999999998799-8976699825177599999999840


No 5  
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=100.00  E-value=0  Score=398.10  Aligned_cols=224  Identities=28%  Similarity=0.435  Sum_probs=187.3

Q ss_pred             CCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEE-EEEECCCCCCCCCE
Q ss_conf             77877740854478888998779875998703578988899997799879875302355523899-75413555544313
Q gi|254781160|r    5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQ   83 (245)
Q Consensus         5 ~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i-~~~~~~~~~~~~i~   83 (245)
                      +|.||+|++.     .++.|+++++|||.||||+++||.|.||||+| .|.|+|.+++++..+.+ ......+.++++++
T Consensus         1 ~~~~r~~~~~-----~~~~L~~~e~~Hl~~VLR~k~Gd~i~v~dg~g-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~   74 (228)
T 1v6z_A            1 MRPHRAFSPG-----LTGVLPLRETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGPPLRYRVLEERRPEREVGVEVV   74 (228)
T ss_dssp             -CCCEEECGG-----GCSBCCHHHHHHHHTTSCCCTTCEEEEECSSC-EEEEEEEECCSSCEEEEEEEECCCCSCSSCEE
T ss_pred             CCCCEECCCC-----CEEECCHHHHHHHHHCCCCCCCCEEEEEECCC-CEEEEEEECCCCEEEEEEEECCCCCCCCCCEE
T ss_conf             9986560899-----96747989988999668199999999997998-88999997168538999864054558885158


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             5413445411567775444456656555542022011---2212233578899997512344343320000001123332
Q gi|254781160|r   84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD  160 (245)
Q Consensus        84 l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~---~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~  160 (245)
                      |++|++|+++|||++||+|||||++|+|++++||+.+   ..+++||++|+++|||||||+++|+|+.|.+|+++++...
T Consensus        75 l~~~l~k~~~~e~il~k~tELGV~~I~p~~sers~~~~~~~~k~~R~~~ii~~A~~Qsgr~~lP~I~~~~~~~~~~~~~~  154 (228)
T 1v6z_A           75 LYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQ  154 (228)
T ss_dssp             EEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCCCSS
T ss_pred             EEEECCCCHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99730280789999999884311799997003442122201102137899999999649944662147647788876544


Q ss_pred             CCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             23332126300012110222100367883599988888888899999995799558636887400448999999999998
Q gi|254781160|r  161 HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI  240 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~~  240 (245)
                      .   .+++....   ...  .......++++++||||||||++|+++|+++|| .+++||++|||+|||+|+|+|++++.
T Consensus       155 ~---~~~~~~~~---~~~--~~~~~~~~~i~i~IGPEGGfs~~Ei~~~~~~~~-~~v~LG~~ILR~ETA~i~alsi~~~~  225 (228)
T 1v6z_A          155 G---LVAHVGAT---ARV--REVLDPEKPLALAVGPEGGFAEEEVALLEARGF-TPVSLGRRILRAETAALALLALCTAG  225 (228)
T ss_dssp             E---EEECTTCC---CCH--HHHCCTTSCEEEEECCTTCCCHHHHHHHHHHTE-EEECCCSSCCCHHHHHHHHHHHHTGG
T ss_pred             H---HHHHCCCC---CCC--CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf             4---33200222---232--312356760699967987889999999997898-89767998245785999999999997


Q ss_pred             HCC
Q ss_conf             478
Q gi|254781160|r  241 CGD  243 (245)
Q Consensus       241 ~g~  243 (245)
                      +|+
T Consensus       226 ~gr  228 (228)
T 1v6z_A          226 EGR  228 (228)
T ss_dssp             GTC
T ss_pred             HCC
T ss_conf             684


No 6  
>1z85_A Hypothetical protein TM1380; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.12A {Thermotoga maritima MSB8}
Probab=100.00  E-value=0  Score=392.06  Aligned_cols=222  Identities=24%  Similarity=0.358  Sum_probs=183.4

Q ss_pred             CCCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEE-CCCCCCCC
Q ss_conf             6778777408544788889987798759987035789888999977998798753023555-238997541-35555443
Q gi|254781160|r    4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQS-RSQTKQSD   81 (245)
Q Consensus         4 ~~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~-~~~~~~~~   81 (245)
                      +-+|||+|+...  .++.+.|+++++||| ||||+++||.|.+|||+|..|.|+|+.++|+ +.+++.... ..+.++++
T Consensus        10 ~~~Mp~~f~~~~--~~~~i~L~~~~~hhl-kVLR~k~Gd~i~l~dG~G~~~~a~I~~i~k~~~~~~i~~~~~~~~~~~~~   86 (234)
T 1z85_A           10 HHHMPHLFYGTA--QNGEVIFDEREAHHM-RVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKEKEPTEK   86 (234)
T ss_dssp             ----CCCEECEE--ETTEEEECHHHHHHH-HHTTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECCCCCSSC
T ss_pred             CCCCCEECCCCC--CCCEEEECHHHHHHH-EECCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEEEEEEECCCCCCC
T ss_conf             177780420688--899799688996687-01638989999999897989999999904852675320024404589871


Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13541344541156777544445665655554202201122122335788999975123443433200000011233322
Q gi|254781160|r   82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH  161 (245)
Q Consensus        82 i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~  161 (245)
                      ++|+++++|+++|||+|||+|||||++|+|+.++||+.+ .+.+||++|+++|||||||+++|+|..+.+++.       
T Consensus        87 i~l~~~l~K~~~~e~il~k~tELGV~~i~p~~~~rs~~~-~k~~r~~~i~~~A~eQsgr~~lP~I~~~~~~~~-------  158 (234)
T 1z85_A           87 LSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHE-ISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEF-------  158 (234)
T ss_dssp             EEEEEECCCHHHHHHHHHHHHHTTCSEEEEECCTTCCCC-CCHHHHHHHHHHHHHHHTCSBCCEEEECCSCCC-------
T ss_pred             EEEEECCCCCCHHHHHHHHHHCEEEEEEEEECCCCCCCH-HHHHHHHHHHHHHHHHCCCCCCCEECHHHHCHH-------
T ss_conf             899971253203799998765269999997123442200-038899999998675318865887664541400-------


Q ss_pred             CCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             33321263000121102221003678835999888888888999999957995586368874004489999999999984
Q gi|254781160|r  162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC  241 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~~~  241 (245)
                      ...+++++.... ..    .......++++++||||||||++|+++|++ || .+++||++|||||||+|+|+|++++..
T Consensus       159 ~~~~~~~~~~~~-~~----~~~~~~~~~i~l~IGPEGGfs~~E~~~~~~-~~-~~v~LG~~ILR~ETA~i~als~i~~~~  231 (234)
T 1z85_A          159 SGNVITLDLDAS-QN----LLDANLEGSITVVVGPEGGFSEKERELLRS-ST-TIVSLGKKILRFETAAILTVGYIALKK  231 (234)
T ss_dssp             CSEEEEECC----CC----CSSSCCCSSEEEEECCTTCCCHHHHHHHHH-HS-EEC------CCHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEECCHH-HH----HCCCCCCCCEEEEECCCCCCCHHHHHHHHC-CC-EEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             288366412012-21----000023684499989988999999999984-99-898789982336729999999999985


Q ss_pred             CC
Q ss_conf             78
Q gi|254781160|r  242 GD  243 (245)
Q Consensus       242 g~  243 (245)
                      .+
T Consensus       232 ~~  233 (234)
T 1z85_A          232 QK  233 (234)
T ss_dssp             TC
T ss_pred             CC
T ss_conf             36


No 7  
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=94.26  E-value=0.033  Score=33.63  Aligned_cols=90  Identities=17%  Similarity=0.218  Sum_probs=61.5

Q ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf             43320-00000112333223332126300012110222100367883599988888888899999995799558636887
Q gi|254781160|r  144 PFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR  222 (245)
Q Consensus       144 P~i~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~  222 (245)
                      |=|.. -.+|+++++.+.....+++.++...+.      .......+.+++.|=-=||+++|.+.++..+. ..+||||.
T Consensus       114 pGi~v~~~~fe~~l~e~~e~~~i~~Lde~G~~i------~~~~~~~~~~FILgDh~~l~~~e~~~L~~~~~-~~iSlGp~  186 (208)
T 2qwv_A          114 PGLTVRTISFEALLGELAEHHSLYMMDKKGDSI------RDIKIGPNPCFILTDHIPMPKKSGNSMKRLGV-EKISLGPK  186 (208)
T ss_dssp             TTEEEECCCHHHHHHHHHTTSEEEEEEEEEEET------TTSCCCSSEEEEECC----------CTTTTTC-EEEECCSS
T ss_pred             CCEEEECCCHHHHHHHHHCCCCEEEECCCCCCH------HHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-CEEEECCH
T ss_conf             998994889999999986479789987899834------22568999879970899989789999987188-23754708


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q ss_conf             400448999999999998
Q gi|254781160|r  223 ILRSDTAAVAAMALVQAI  240 (245)
Q Consensus       223 ILR~ETA~i~als~~~~~  240 (245)
                      .|=+..+.+.+--.+--.
T Consensus       187 ~L~a~hcI~ivh~~LDr~  204 (208)
T 2qwv_A          187 MLFASQCVTLIHNEIDHQ  204 (208)
T ss_dssp             CCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCC
T ss_conf             888778999999987202


No 8  
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7
Probab=94.04  E-value=0.13  Score=29.75  Aligned_cols=82  Identities=22%  Similarity=0.283  Sum_probs=56.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHH
Q ss_conf             00000112333223332126300012110222100367883599988888888899999995799558636887400448
Q gi|254781160|r  149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT  228 (245)
Q Consensus       149 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ET  228 (245)
                      -.+|++.++.+.....+++.++...+.      ......++.+++.|=-=||+++|.+.+...+. ..+||||..|=+..
T Consensus       111 ~~~~e~~l~e~~~~~~~~~L~e~G~~i------~~~~~~~~~~FiL~Dh~~l~~~e~~~L~~~~~-~~iSLGp~~L~a~h  183 (197)
T 2qmm_A          111 RKGLEELIEELSEKYSIIYLKEDGVDI------SNAQLPPNPLFVIGDHEGLTEEQEKVVERYAA-LKLSLSPLSLLAEQ  183 (197)
T ss_dssp             CCCHHHHHHHHHHHSEEEEEEEEEEEG------GGSCCCSSEEEEEECTTCCCHHHHHHHHTTCS-EEEECCSSCCCHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCCCC------CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCCHHH
T ss_conf             889999999987389589987879761------23457999879972899988779998865177-03651641016346


Q ss_pred             HHHHHHHHH
Q ss_conf             999999999
Q gi|254781160|r  229 AAVAAMALV  237 (245)
Q Consensus       229 A~i~als~~  237 (245)
                      +.+.+--.+
T Consensus       184 cI~ivh~~L  192 (197)
T 2qmm_A          184 CVVIAHHHL  192 (197)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             696999988


No 9  
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=92.91  E-value=0.076  Score=31.27  Aligned_cols=117  Identities=14%  Similarity=0.122  Sum_probs=60.4

Q ss_pred             CCCCCEE-EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             5443135-413445411567775444456656555542022011221223357889999751234434332000000112
Q gi|254781160|r   78 KQSDVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL  156 (245)
Q Consensus        78 ~~~~i~l-~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l  156 (245)
                      +.+.+.+ +-.+-.+..+-.|++-|.-.|+..++.+....+...      +++.      ..+......+....++.+++
T Consensus        19 ~~~~~~vvld~v~~p~NlGaIiRta~afG~~~i~~v~~~~~~~~------~~~~------~~~~~~~~~~~~~~~~~~~l   86 (194)
T 1v2x_A           19 RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPT------FNET------SGGSHKWVYLRVHPDLHEAF   86 (194)
T ss_dssp             CBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCC------CCSS------CSSGGGTSEEEEESSHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCH------HHHH------CCCCCCEEEEEEECCHHHHH
T ss_conf             89998999967988465999999999749964303588667713------4431------03443124699955899999


Q ss_pred             CCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHH
Q ss_conf             333223332126300012110222100367883599988888-88889999999
Q gi|254781160|r  157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLH  209 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~  209 (245)
                      +........+...+....   ...+......+++.+++|+|+ |.|++..+...
T Consensus        87 ~~lk~~~~~i~~~~~~~~---~~~~~~~~~~~~~~lVfG~E~~Gls~e~l~~~d  137 (194)
T 1v2x_A           87 RFLKERGFTVYATALRED---ARDFREVDYTKPTAVLFGAEKWGVSEEALALAD  137 (194)
T ss_dssp             HHHHHTTCEEEEECCCTT---SEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSS
T ss_pred             HHHHHCCCEEEECCCCCC---CCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCC
T ss_conf             999975982542012222---454011026888289976767889999998589


No 10 
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=91.62  E-value=0.26  Score=27.75  Aligned_cols=117  Identities=15%  Similarity=0.099  Sum_probs=62.2

Q ss_pred             CCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCC
Q ss_conf             443135413-4454115677754444566565555420220112212233578899997512344343320-00000112
Q gi|254781160|r   79 QSDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLL  156 (245)
Q Consensus        79 ~~~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~-~~~l~~~l  156 (245)
                      .+++.++.- +-++..+-.|++-+.-+||+.++  ....+....   .    .++. +..+.-.++|.+.. ..++.+++
T Consensus        24 ~~~l~vvld~i~dP~NlG~IiRta~afGv~~vi--v~~~~~~~~---~----~~~~-~s~g~~~~i~~~~~~~~~~~~~l   93 (184)
T 2ha8_A           24 ISRLIVVASLIDKPTNLGGLCRTCEVFGASVLV--VGSLQCISD---K----QFQH-LSVSAEQWLPLVEVKPPQLIDYL   93 (184)
T ss_dssp             CCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEE--ESCGGGGGS---H----HHHH-HHTTGGGTSCEEECCGGGHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE--CCCCCCCCC---H----HHHH-HCCCCCCEECCCCCCCHHHHHHH
T ss_conf             798799981788803799999999981997795--076445687---4----7776-40553102021134514689999


Q ss_pred             CCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHH
Q ss_conf             333223332126300012110222100367883599988888-8888999999
Q gi|254781160|r  157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETL  208 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l  208 (245)
                      .........+++-+......   .+......+++++++|.|+ |.|+++.+.+
T Consensus        94 ~~~k~~g~~vv~~~~~~~~~---~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~  143 (184)
T 2ha8_A           94 QQKKTEGYTIIGVEQTAKSL---DLTQYCFPEKSLLLLGNEREGIPANLIQQL  143 (184)
T ss_dssp             HHHHHTTCEEEEECCCTTCE---EGGGCCCCSSEEEEECBTTTBSCHHHHTTC
T ss_pred             HHHHHCCCEEEEECCCCCCC---CCCCCCCCCCCEEEECCCCCCCCHHHHHHC
T ss_conf             99875596898731324553---332111468856886765578899999858


No 11 
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=90.49  E-value=0.52  Score=25.83  Aligned_cols=77  Identities=12%  Similarity=0.141  Sum_probs=50.6

Q ss_pred             CCCCCCCCCCCCCCCHHCCCCCHHH---HHCC--CCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHH
Q ss_conf             2333223332126300012110222---1003--6788359998888888889999999579955863688740044899
Q gi|254781160|r  156 LKNWDHNCQIVFADETCGSENSLEK---LHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA  230 (245)
Q Consensus       156 l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~  230 (245)
                      ++..+.++.+++.|+.....++.+-   +...  ...+.+.++||+--||++.   .++.+.  ..+|||+-.+-=|-|.
T Consensus        64 l~~~~~~~~~I~LDe~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGGa~G~~~~---~~~~a~--~~lSls~mT~pH~lar  138 (167)
T 1to0_A           64 LSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDT---VMKRAD--EKLSFSKMTFPHQLMR  138 (167)
T ss_dssp             HTTSCTTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHH---HHHHCS--EEEESCSSCCCHHHHH
T ss_pred             HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH---HHHHCC--CEEECCCCCCCHHHHH
T ss_conf             97279998799981899753899999999999865996289996688888988---996268--5776578886189999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254781160|r  231 VAAMALV  237 (245)
Q Consensus       231 i~als~~  237 (245)
                      ++++=++
T Consensus       139 v~L~EQl  145 (167)
T 1to0_A          139 LILVEQI  145 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999999


No 12 
>1vh0_A Hypothetical UPF0247 protein SAV0024/SA0023; structural genomics, unknown function; 2.31A {Staphylococcus aureus} SCOP: c.116.1.3
Probab=86.09  E-value=1.2  Score=23.39  Aligned_cols=76  Identities=13%  Similarity=0.124  Sum_probs=49.6

Q ss_pred             CCCCCCCCCCCCCCHHCCCCCHHH---HHC--CCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHH
Q ss_conf             333223332126300012110222---100--367883599988888888899999995799558636887400448999
Q gi|254781160|r  157 KNWDHNCQIVFADETCGSENSLEK---LHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV  231 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i  231 (245)
                      +..+..+.+++.|+.....++.+-   +..  ....+.+.++||+-.||+++=.   +.+.  ..+|||+-.+=-|-|.+
T Consensus        67 ~~i~~~~~~I~LDe~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGGa~G~~~~~~---~~a~--~~lSls~mTfpH~lar~  141 (161)
T 1vh0_A           67 AKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVL---QRSN--YALSFSKMTFPHQMMRV  141 (161)
T ss_dssp             HTSCTTSEEEEEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHH---HHCS--EEECSCSSCCCHHHHHH
T ss_pred             HHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH---HHCC--CEEECCCCCCCHHHHHH
T ss_conf             861899879999589888886999999999997499748999468755487999---8538--87875689874899999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254781160|r  232 AAMALV  237 (245)
Q Consensus       232 ~als~~  237 (245)
                      +++=++
T Consensus       142 ~l~EQl  147 (161)
T 1vh0_A          142 VLIEQV  147 (161)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999


No 13 
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=86.06  E-value=0.77  Score=24.71  Aligned_cols=76  Identities=16%  Similarity=0.165  Sum_probs=47.6

Q ss_pred             CCCCCCCCCCCCCCHHCCCCCHHH---HHCC-CCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf             333223332126300012110222---1003-678835999888888888999999957995586368874004489999
Q gi|254781160|r  157 KNWDHNCQIVFADETCGSENSLEK---LHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA  232 (245)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~  232 (245)
                      +..+..+.+++.|+.....++.+-   +... ...+++.++||+--||+++-   +..+.  ..+|||+-++-=+-|.++
T Consensus        60 ~~i~~~~~vI~LDe~Gk~~sS~~fA~~L~~~~~~g~~i~FvIGGa~Gl~~~~---~~~a~--~~lSlS~mT~pH~larv~  134 (163)
T 1o6d_A           60 NRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEI---FAKAH--RVFSLSKMTFTHGMTVLI  134 (163)
T ss_dssp             TTCCTTCEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGGG---GGGCS--EEEECCSSCCCHHHHHHH
T ss_pred             HCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH---HHHHC--CEEECCCCCCHHHHHHHH
T ss_conf             5079998899974787877869999999999836885699996788879999---98618--689568888618999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254781160|r  233 AMALV  237 (245)
Q Consensus       233 als~~  237 (245)
                      ++=++
T Consensus       135 L~EQi  139 (163)
T 1o6d_A          135 VLEQI  139 (163)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99999


No 14 
>3ic6_A Putative methylase family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=83.87  E-value=1.3  Score=23.27  Aligned_cols=159  Identities=14%  Similarity=0.070  Sum_probs=76.4

Q ss_pred             CCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC------HH-----HHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             43135413-4454115677754444566565555420220------11-----221223357889999751234434332
Q gi|254781160|r   80 SDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT-----HYNMDRVRTYTISAAEQCDILTLPFIY  147 (245)
Q Consensus        80 ~~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~------~~-----~~k~eR~~~ii~eA~eQsgr~~lP~i~  147 (245)
                      ..+.+++- +-.+..+-.|++-+.-.|++.++.+......      ..     ......+...+..++..+. -++|...
T Consensus        16 ~~i~vVL~~~~~P~NlGaI~Rt~~~fG~~~l~lv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ga~-~~l~~~~   94 (223)
T 3ic6_A           16 GNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAA-DVLHNAE   94 (223)
T ss_dssp             GGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGH-HHHHTCE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCH-HHHCCEE
T ss_conf             486999917988774999999999749987999746766642101222235543235676588999863648-7628237


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHH------CCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEECC
Q ss_conf             0000001123332233321263000------12110222100367883599988888-8888999999957995586368
Q gi|254781160|r  148 PPTTLEFLLKNWDHNCQIVFADETC------GSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFVTPLSLG  220 (245)
Q Consensus       148 ~~~~l~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~~vsLG  220 (245)
                      ...+++++++...............      ................++.+++|+|+ |.|+++.+.+...-.+ |.+=+
T Consensus        95 ~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfGnE~~GLs~~~~~~~d~~v~I-Pm~~~  173 (223)
T 3ic6_A           95 IVATLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTI-NGNPD  173 (223)
T ss_dssp             EESCHHHHHTTEEEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSEEECC-CCCTT
T ss_pred             EECHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCEEC-CCCCC
T ss_conf             86149998753121111111113554420132100014555530477717997666668797898863001111-58999


Q ss_pred             CCCCCHHHHHHHHHHHHHHH
Q ss_conf             87400448999999999998
Q gi|254781160|r  221 PRILRSDTAAVAAMALVQAI  240 (245)
Q Consensus       221 ~~ILR~ETA~i~als~~~~~  240 (245)
                      -.-|=.-+|+-.++.-+..+
T Consensus       174 ~~SLNvS~A~aIvlyE~~rq  193 (223)
T 3ic6_A          174 YFSLNLAQAVQVVCYEIFSQ  193 (223)
T ss_dssp             CCCCCHHHHHHHHHHHHHHT
T ss_pred             CCCEEHHHHHHHHHHHHHHH
T ss_conf             97327999999999999984


No 15 
>2v3j_A Essential for mitotic growth 1; EMG1, rRNA processing, nuclear protein, ribonucleoprotein, ribosome biogenesis; 2.00A {Saccharomyces cerevisiae} SCOP: c.116.1.6 PDB: 2v3k_A*
Probab=75.18  E-value=2.3  Score=21.62  Aligned_cols=114  Identities=8%  Similarity=0.051  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECC
Q ss_conf             2122335788999975123443433200000011-----23332233321263000121102221003678835999888
Q gi|254781160|r  122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL-----LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP  196 (245)
Q Consensus       122 ~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGP  196 (245)
                      .+..||...+..-.+ -  ..+|.......+-..     .+..+..++++............+.........+++++||-
T Consensus       132 Rty~RF~gLM~qLL~-k--~~I~~~~~~~~LlkvIknpvtd~lp~~~r~I~LS~~G~~v~~~~~a~~l~~~~~i~~vIGa  208 (258)
T 2v3j_A          132 RTFKRFSGLMVQLLH-K--LSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGA  208 (258)
T ss_dssp             SSHHHHHHHHHHHHH-H--SEEEC---CCEEEEEECSCGGGTSCSSEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHH-H--CCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEE
T ss_conf             688899999999986-4--8755688865534543065100378999899989987663799999873447987999813


Q ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf             8888889999999579955863688740044899999999999847
Q gi|254781160|r  197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG  242 (245)
Q Consensus       197 EGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~~~g  242 (245)
                      =-+-..   ++..+.- -..+|+|+..|-|-+++--.++..-.+||
T Consensus       209 fa~Gd~---~~~~~yv-de~ISISdYpLSa~~v~sri~~~~E~~wg  250 (258)
T 2v3j_A          209 MARGKD---NFADEYV-DEKVGLSNYPLSASVACSKFCHGAEDAWN  250 (258)
T ss_dssp             SSSCCT---TTTTTTC-SCEEBSCSSCCCHHHHHHHHHHHHHHHTT
T ss_pred             ECCCCC---CCCCHHC-EEEEEEECCCHHHHHHHHHHHHHHHHHHC
T ss_conf             548985---5120005-05899728854199999999999999848


No 16 
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=75.02  E-value=4.3  Score=19.82  Aligned_cols=114  Identities=15%  Similarity=0.117  Sum_probs=59.1

Q ss_pred             CCEE-EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3135-413445411567775444456656555542022011221223357889999751234434332000000112333
Q gi|254781160|r   81 DVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW  159 (245)
Q Consensus        81 ~i~l-~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~  159 (245)
                      ++.| +-.+-.+..+-.+++-|.-.|++.++.  +....       -|...+..++. ..-.++|.+...  ..++++..
T Consensus       116 ~~~lvLd~i~dP~NlGaiiRta~afg~~~ii~--~~~~~-------~~~~~~~r~s~-ga~~~~~~~~~~--~~~~~~~~  183 (274)
T 1ipa_A          116 ALILVAVGLEKPGNLGAVLRSADAAGAEAVLV--AGGVD-------LYSPQVIRNST-GVVFSLRTLAAS--ESEVLDWI  183 (274)
T ss_dssp             CEEEEEESCCCHHHHHHHHHHHHHHTCSEEEE--ESCCC-------TTCHHHHHHTT-TGGGTSCEEEEC--HHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE--CCCCC-------CCCCCEECCCC-CEEEEEEEEEEC--HHHHHHHH
T ss_conf             78999968978627999999999749877884--48723-------34640000354-316899888611--37788876


Q ss_pred             CCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHH
Q ss_conf             223332126300012110222100367883599988888-888899999995
Q gi|254781160|r  160 DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHS  210 (245)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~  210 (245)
                      ......++........ .   .......+++++++|+|| |.|++..+....
T Consensus       184 ~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~  231 (274)
T 1ipa_A          184 KQHNLPLVATTPHAEA-L---YWEANLRPPVAIAVGPEHEGLRAAWLEAAQT  231 (274)
T ss_dssp             HHTTCCEEEECTTCSS-B---GGGSCCCSSEEEEECCTTSCCCHHHHHHCSE
T ss_pred             HHCCEEECCCCCCCCC-C---CEECCCCCCEEEEECCCCCCCCHHHHHHCCE
T ss_conf             5123000012333343-1---1001467773999916767889999974897


No 17 
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=74.95  E-value=1.6  Score=22.69  Aligned_cols=136  Identities=13%  Similarity=0.173  Sum_probs=68.5

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13541344541156777544445665655554202201122122335788999975123443433200000011233322
Q gi|254781160|r   82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH  161 (245)
Q Consensus        82 i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~  161 (245)
                      +-++-.+-.+..+-.+++-|.-+|++.++..  .++.      +-+...+..++..+.. ++|.. ...+++++++....
T Consensus       107 ~vvLd~i~dp~NlGaiiRta~afG~~~vil~--~~~~------~~~~~~~~r~s~G~~~-~~~~~-~~~~l~~~l~~l~~  176 (253)
T 1gz0_A          107 LLILDGVTDPHNLGACLRSADAAGVHAVIVP--KDRS------AQLNATAKKVACGAAE-SVPLI-RVTNLARTMRMLQE  176 (253)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHHTCSEEEEE--SSSS------CCCCHHHHHHHTTHHH-HSCEE-EESCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEEEC--CCCC------CCCCCHHHHHHCCCHH-CCCCC-CCCCHHHHHHHHHH
T ss_conf             9999557885079999999997299868304--6766------7652422343258611-28950-16999999998643


Q ss_pred             CCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEECCCCC--CCHHHHHHHHH
Q ss_conf             3332126300012110222100367883599988888-8888999999957995586368874--00448999999
Q gi|254781160|r  162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFVTPLSLGPRI--LRSDTAAVAAM  234 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~~vsLG~~I--LR~ETA~i~al  234 (245)
                      ....++..+.....    .+......+++.+++|.|+ |.|++..+....   .-.+-+-+.+  |=.-+|+-.++
T Consensus       177 ~~~~~~~~~~~~~~----~~~~~~~~~~~~lv~GnE~~Gls~~~l~~~d~---~v~IP~~g~~~SLNva~A~aI~l  245 (253)
T 1gz0_A          177 ENIWIVGTAGEADH----TLYQSKMTGRLALVMGAEGEGMRRLTREHCDE---LISIPMAGSVSSLNVSVATGICL  245 (253)
T ss_dssp             TTCEEEEECTTCSE----EGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSE---EEECCCSSSSCCCCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCC----CHHHHCCCCCEEEEECCCCCCCCHHHHHHCCE---EEEECCCCCCCCHHHHHHHHHHH
T ss_conf             01222122323455----31121047976999878777889999985998---99978989995061999999999


No 18 
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.10 c.116.1.2
Probab=73.67  E-value=4.7  Score=19.57  Aligned_cols=54  Identities=19%  Similarity=0.349  Sum_probs=35.4

Q ss_pred             CCCCCCCEEEEEC-CCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             0367883599988-888888899999995799558636887400448999999999998
Q gi|254781160|r  183 AIAHIPNVAILIG-PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI  240 (245)
Q Consensus       183 ~~~~~~~i~i~IG-PEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~~  240 (245)
                      .....+.++++.| |.+|.-+-.-+.  --+++ | +-|.+..|+|-|.+.+||+++++
T Consensus       206 ~~~~~~~~lvvFGgp~~Gl~e~~~D~--~lNt~-P-~QGsrtIRtEEAv~itLa~ln~~  260 (268)
T 1k3r_A          206 RMRGAREAAILFGGPYKGLPEIDADI--WVNTL-P-GQCTETVRTEEAVLATLSVFNML  260 (268)
T ss_dssp             HHTTCSEEEEECCCSSSCCCSCCCSE--EEBSS-T-TCSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCCHHHHCCE--EEECC-C-CCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             45678708999899655764341785--89838-9-98887661899999999999818


No 19 
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=69.60  E-value=2.7  Score=21.15  Aligned_cols=140  Identities=9%  Similarity=-0.001  Sum_probs=69.7

Q ss_pred             CCCCEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             4431354-134454115677754444566565555420220112212233578899997512344343320000001123
Q gi|254781160|r   79 QSDVQYI-FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK  157 (245)
Q Consensus        79 ~~~i~l~-~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~  157 (245)
                      ++++.++ -.+-.+..+-.+++-|.-+|++.++.+...-...     +..+     .+-.....++|-.. ..++.++++
T Consensus        23 ~~~l~vvLd~i~~p~NiGaI~Rta~afG~~~v~l~~~~~~~~-----~~~~-----~~s~gs~~~~~~~~-~~~~~~~l~   91 (211)
T 1zjr_A           23 QKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKA-----KINE-----GITQGSHKWVFIEK-VDNPVQKLL   91 (211)
T ss_dssp             EEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTCC-----CCCH-----HHHTTGGGSSEEEE-CSCHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC-----HHHH-----HHHCCCCCEEEEEE-ECCHHHHHH
T ss_conf             999899995898843799999999985898899948988862-----7788-----88524410357999-678899987


Q ss_pred             CCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHH
Q ss_conf             3322333212630001211022210036788359998888-888889999999579955863688--7400448999999
Q gi|254781160|r  158 NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKETLHSLPFVTPLSLGP--RILRSDTAAVAAM  234 (245)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~l~~~~~~~~vsLG~--~ILR~ETA~i~al  234 (245)
                      ........++.-+......   .+......+++.+++|+| -|.|++..+.....   -.+-+-+  .-|=.-+|+-.++
T Consensus        92 ~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~lvfG~E~~GLs~e~l~~~d~~---v~IPm~g~~~SLNvs~A~aI~l  165 (211)
T 1zjr_A           92 EFKNRGFQIVATWLSKESV---NFREVDYTKPTVLVVGNELQGVSPEIVEIADKK---IVIPMYGMAQSLNVSVATGIIL  165 (211)
T ss_dssp             HHHHTTCEEEEEBCSTTSE---EGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEE---EECCCCSSCSSCCHHHHHHHHH
T ss_pred             HHHHCCCEEEEEECCCCCC---CCCCCCCCCEEEEEECCCCCCCCHHHHHHCCEE---EEECCCCCCCEEEHHHHHHHHH
T ss_conf             6540484488740333332---221245663069997676678999999857989---9977999997004999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254781160|r  235 A  235 (245)
Q Consensus       235 s  235 (245)
                      -
T Consensus       166 y  166 (211)
T 1zjr_A          166 Y  166 (211)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 20 
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=69.22  E-value=3.7  Score=20.29  Aligned_cols=114  Identities=15%  Similarity=0.144  Sum_probs=58.6

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13541344541156777544445665655554202201122122335788999975123443433200000011233322
Q gi|254781160|r   82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH  161 (245)
Q Consensus        82 i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~  161 (245)
                      +-++-.+-.+..+--|++-|.-+|++.++.... ++.      +-|...+..|+.-+ -.++|...  .++.++++....
T Consensus       121 ilvLD~IqDPgNlGaIiRta~afG~~~vil~~~-~~~------~~~~~kv~RaS~Ga-~~~~p~~~--~~~~~~~~~l~~  190 (277)
T 3nk6_A          121 VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDS-DLA------TIADRRLLRASRGY-VFSLPVVL--ADREEAVSFLRD  190 (277)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHTTCSEEEEESC-CCS------CTTCHHHHHHTTTC-TTTSCEEE--CCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEEEECCC-CCC------CCCCCCCCCCCCCC-EEECCEEE--CCCCHHHHHHHH
T ss_conf             999947887745899999999708857996257-855------23473124325663-34212022--032034677763


Q ss_pred             CCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHH
Q ss_conf             3332126300012110222100367883599988888-8888999999
Q gi|254781160|r  162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETL  208 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l  208 (245)
                      ....++..+..+... ...  .....+++.+++|.|| |.|++..+..
T Consensus       191 ~~~~i~~~~~~~~~~-~~~--~~~~~~~~~lv~G~E~~Gls~~~~~~~  235 (277)
T 3nk6_A          191 NDIALMVLDTDGDLG-VKD--LGDRADRMALVFGSEKGGPSGLFQEAS  235 (277)
T ss_dssp             TTCCEEEECTTCSEE-GGG--GGGCCSCCEEEEEBTTTBSCHHHHHHC
T ss_pred             CCCEEEEEEECCCCC-EEC--CCCCCCCEEEEECCCCCCCCHHHHHHC
T ss_conf             586179998437644-000--114788889998776678889999738


No 21 
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83}
Probab=58.79  E-value=7.6  Score=18.22  Aligned_cols=114  Identities=10%  Similarity=0.049  Sum_probs=56.6

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13541344541156777544445665655554202201122122335788999975123443433200000011233322
Q gi|254781160|r   82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH  161 (245)
Q Consensus        82 i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~  161 (245)
                      +-++-.+-.+..+-.|++-|.-.|++.++..  +.+.      +-|...++.|+.-+ -.++|.+. ..++.++++....
T Consensus       105 ~lvLd~i~dPgNlGaIiRta~afG~~~vil~--~~~~------d~~~~k~~ras~Ga-~~~v~~~~-~~~~~~~l~~l~~  174 (257)
T 2i6d_A          105 TLLLDGVQDPGNVGTILRTADWFGIRHVWLG--TGSA------DVFSPKVVQASMGA-LARVQPTP-LKNTVDTLAYFRR  174 (257)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHHTCCEEEEC--TTCC------CTTSHHHHHTSTTG-GGTCEEEE-CSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEEEC--CCCC------CCCCHHHHHHCCCC-CEECCCCC-CCHHHHHHHHHHH
T ss_conf             9999579884579999999998098602000--1455------65776663211575-01102233-3125678999853


Q ss_pred             CCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHH
Q ss_conf             3332126300012110222100367883599988888-888899999
Q gi|254781160|r  162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKET  207 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~  207 (245)
                      ....++..... ... ........-.+++.+++|.|| |.|++-.+.
T Consensus       175 ~~~~i~~~~~~-~~~-~~~~~~~~~~~~~~lv~GnE~~Gls~~~~~~  219 (257)
T 2i6d_A          175 QGIPVYGAFLD-GQS-LYEAPLPNFTEPAILVLGSEGRGISPEVAAE  219 (257)
T ss_dssp             TTCCEEEEEEE-EEE-TTTSCCCCTTSCEEEEEEBTTTBSCHHHHTT
T ss_pred             CCCEEEEECCC-CCC-CCCCCCCCCCCCEEEEECCCCCCCCHHHHHH
T ss_conf             68359983024-553-1000012678865999878767889999984


No 22 
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=58.33  E-value=7.2  Score=18.38  Aligned_cols=115  Identities=10%  Similarity=0.161  Sum_probs=55.7

Q ss_pred             CCEE-EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---C
Q ss_conf             3135-41344541156777544445665655554202201122122335788999975123443433200000011---2
Q gi|254781160|r   81 DVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---L  156 (245)
Q Consensus        81 ~i~l-~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~---l  156 (245)
                      .+.+ +-.+-.+..+-.|++-|.-.|++.++.  +..+.      +-|...++.|+.-+ -.++|.+. ..++.++   +
T Consensus       126 ~~~lvLd~i~dPgNlGaIiRta~afG~~~vil--~~~~~------~~~~~~~~ras~Ga-~~~~~~~~-~~~~~~~~~~l  195 (287)
T 1x7o_A          126 FLGVLFDRPTSPGNIGSIIRSADALGAHGLIV--AGHAA------DVYDPKSVRSSTGS-LFSLPAVR-VPSPGEVMDWV  195 (287)
T ss_dssp             CEEEEEESCSCHHHHHHHHHHHHHTTCCEEEE--ESSSS------CTTSHHHHHHTTTG-GGTSCEEE-ESSHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE--EEECC------CCCCCCCCEECCCH-HHHCCEEE-EEHHHHHHHHH
T ss_conf             77999966877655899999888559876999--73034------44443000001021-32110489-81046777765


Q ss_pred             CCCC--CCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHH
Q ss_conf             3332--23332126300012110222100367883599988888-88889999999
Q gi|254781160|r  157 KNWD--HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLH  209 (245)
Q Consensus       157 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~  209 (245)
                      +...  .....++..+....    ..+.+....+++.+++|.|| |.|++..+...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d  247 (287)
T 1x7o_A          196 EARRAAGTPIVLVGTDEHGD----CDVFDFDFTQPTLLLIGNETAGLSNAWRTLCD  247 (287)
T ss_dssp             HHHHHHTCCCEEEEECTTCS----EEGGGSCTTSCEEEEECBTTTBSCHHHHHHCS
T ss_pred             HHHHCCCCCEEEECCCCCCC----CCCHHHCCCCCEEEEECCCCCCCCHHHHHHCC
T ss_conf             55540487568741200024----32111203686299988888788999998589


No 23 
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=54.25  E-value=4.8  Score=19.55  Aligned_cols=138  Identities=17%  Similarity=0.165  Sum_probs=62.8

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13541344541156777544445665655554202201122122335788999975123443433200000011233322
Q gi|254781160|r   82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH  161 (245)
Q Consensus        82 i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~  161 (245)
                      +-++.-+-.+...-.+++-+--.|++.++.+...-..        +..-+..++.-+ ...++......++..++.....
T Consensus         6 ~iVLv~p~~p~NiGai~R~~~~fG~~~l~lv~p~~~~--------~~~~~~~~a~ga-~~~~~~~~~~~~~~~~~~~~~~   76 (249)
T 3onp_A            6 VFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGW--------PNPKAVAMASGA-GRLLDHAGLFPTVAEAIRDCDY   76 (249)
T ss_dssp             EEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCS--------SCHHHHHHHGGG-HHHHHTCEEESSHHHHHTTCSE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC--------CCHHHHHHHCCC-HHEECEEEEECCHHHHHHHHCC
T ss_conf             8999389998749999999998289989991898899--------988999884787-3220211364459999763000


Q ss_pred             C----------CCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEECCC--CCCCHHH
Q ss_conf             3----------332126300012110222100367883599988888-88889999999579955863688--7400448
Q gi|254781160|r  162 N----------CQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFVTPLSLGP--RILRSDT  228 (245)
Q Consensus       162 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~~vsLG~--~ILR~ET  228 (245)
                      .          ........    .............+++.++.|+|+ |.|++|++.....   ..+-..+  ..|=..+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~kvalVFG~E~~GLs~e~l~~cd~~---v~IP~~~~~~SLNls~  149 (249)
T 3onp_A           77 VFATTARGRELTKPVMTPE----RAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAI---VTVPVNPEFFSLNLAQ  149 (249)
T ss_dssp             EEEEESSCCCSSSCEECHH----HHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEE---EECCCCTTCCCCCHHH
T ss_pred             HHHHHHHHCCCCCCCCHHH----HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCEE---EEECCCCCCCCEEHHH
T ss_conf             1322223135786410011----34677787650477659999478778887887402518---9834899988615999


Q ss_pred             HHHHHHH
Q ss_conf             9999999
Q gi|254781160|r  229 AAVAAMA  235 (245)
Q Consensus       229 A~i~als  235 (245)
                      |+..++-
T Consensus       150 AvaIvly  156 (249)
T 3onp_A          150 CVLLLAY  156 (249)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999999


No 24 
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305}
Probab=51.37  E-value=5.9  Score=18.96  Aligned_cols=112  Identities=13%  Similarity=0.078  Sum_probs=51.2

Q ss_pred             CCEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3135413445-41156777544445665655554202201-122122335788999975123443433200000011233
Q gi|254781160|r   81 DVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN  158 (245)
Q Consensus        81 ~i~l~~~~~k-~~~~~~ilqk~tELGV~~I~p~~~~rs~~-~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~  158 (245)
                      -+++++--|+ +..+-.+++-+.-+|++.++.  ..++.. ...+..+         -..+..+...+......+..+..
T Consensus         5 ~~~ivL~~p~~P~NiGaI~Rta~afGi~~viv--~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~   73 (160)
T 3e5y_A            5 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLI--EPLGFPLDDAKMRR---------AGLDYHEYAQMRVHRDWDAFVAA   73 (160)
T ss_dssp             CCEEEEESCCCHHHHHHHHHHHHHHTCEEEEE--SSCSSCCCHHHHHH---------TTCCHHHHHTCEEESSHHHHHHH
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE--CCCCCCHHHHHHHH---------HHCCCEEEEEEEEECCHHHHHHH
T ss_conf             57999948999983999999999849957852--69986402689998---------74162587645663218889988


Q ss_pred             CCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHH
Q ss_conf             322333212630001211022210036788359998888-8888899999
Q gi|254781160|r  159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKET  207 (245)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~  207 (245)
                      ........+......    ..........+++++++|.| .|.|++..+.
T Consensus        74 ~~~~~~~~~~~~~~~----~~~~~~~~~~~k~~lv~G~E~~Gls~~~l~~  119 (160)
T 3e5y_A           74 EAPDPARMFAFTTRG----SGRFHDRAFEPGDWFVFGAETRGLAPALVDR  119 (160)
T ss_dssp             HCCCGGGEEEECSTT----CEEGGGSCCCTTCEEEEEBTTTBSCHHHHTT
T ss_pred             HHCCCCEEEEEEECC----CCCCCCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf             750583699973012----3322112456523999804778899899986


No 25 
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=50.34  E-value=10  Score=17.35  Aligned_cols=50  Identities=20%  Similarity=0.253  Sum_probs=35.3

Q ss_pred             EEEECHHH-HHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCC-CCCEEEEE
Q ss_conf             89987798-7599870357898889999779987987530235-55238997
Q gi|254781160|r   21 QGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVE   70 (245)
Q Consensus        21 ~i~L~~~~-~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~-k~~~~~i~   70 (245)
                      ...|+.+. ..|=++-++++.||.|.|.-|+..--.++|..+. ++..+.++
T Consensus        25 ~a~LskeLr~k~g~R~~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~rV~Ve   76 (120)
T 1vq8_T           25 RATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE   76 (120)
T ss_dssp             EEEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred             ECCCCHHHHHHHCCCCCCEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEE
T ss_conf             5727988999839853315079999995667699753299998679999994


No 26 
>2wwb_L 60S ribosomal protein L26-A; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_L 2ww9_L 1s1i_U
Probab=45.90  E-value=15  Score=16.37  Aligned_cols=52  Identities=21%  Similarity=0.238  Sum_probs=36.3

Q ss_pred             CEEEECHHH-HHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCC-CCCEEEEEE
Q ss_conf             889987798-7599870357898889999779987987530235-552389975
Q gi|254781160|r   20 TQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEY   71 (245)
Q Consensus        20 ~~i~L~~~~-~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~-k~~~~~i~~   71 (245)
                      -...|+.+. ..|=++.|+++.||.|.|.-|+..--.++|..+. ++..+.++.
T Consensus        31 m~a~Lskelr~k~~~rs~~IrkGD~V~Vi~G~~KGk~GkV~~V~~~~~kV~VEg   84 (127)
T 2wwb_L           31 LSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDK   84 (127)
T ss_dssp             TEEECCSHHHHHHSCSEEECCTTSEEEECSSSSTTCEEEEEEEETTTTEEEESS
T ss_pred             EECCCCHHHHHHHCCCCCEEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEEC
T ss_conf             547379999998388411060799999977434894136999987799999918


No 27 
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=45.28  E-value=15  Score=16.31  Aligned_cols=46  Identities=20%  Similarity=0.159  Sum_probs=35.1

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             883599988888888899999995799558636887400448999999999
Q gi|254781160|r  187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV  237 (245)
Q Consensus       187 ~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~  237 (245)
                      .+++.++||+--||+++=   .+.+.  ..+|||+-++=-+-|.++++=++
T Consensus        95 g~~i~fiIGGa~G~~~~~---~~~a~--~~lSls~mT~pH~larv~l~EQl  140 (155)
T 1ns5_A           95 GRDVSLLIGGPEGLSPAC---KAAAE--QSWSLSALTLPHPLVRVLVAESL  140 (155)
T ss_dssp             CSCEEEEECBTTBCCHHH---HHHCS--EEECCCSSCCCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHH---HHHHC--CEEECCCCCCCHHHHHHHHHHHH
T ss_conf             998799996787558899---98519--58867799985899999999999


No 28 
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae}
Probab=45.16  E-value=12  Score=16.87  Aligned_cols=144  Identities=11%  Similarity=0.038  Sum_probs=66.5

Q ss_pred             CEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             1354-134454115677754444566565555420220112212233578899997512344343320000001123332
Q gi|254781160|r   82 VQYI-FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD  160 (245)
Q Consensus        82 i~l~-~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~  160 (245)
                      |.++ ..+-.+..+-.+++-+.-.|++.++.+-. ++    ...+     +...+ -.+...++......++++++....
T Consensus         8 i~iVL~~p~~p~NiGai~Rs~~~fG~~~L~lV~p-~~----~~~~-----a~~~a-~ga~~~l~~~~~~~~~~~~~~~~~   76 (244)
T 3ilk_A            8 IRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSP-KS----VDEQ-----SYALS-AGAENIVKNARVVDSFDEAVDDCS   76 (244)
T ss_dssp             EEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESC-SC----CSHH-----HHHTT-TTCHHHHHHCEEESSHHHHTTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC-CC----CCHH-----HHHHH-CCCCCCCCCEEEEECHHHHHHHHH
T ss_conf             8999948988676999999999809997999389-99----8979-----99974-754112375799840666666677


Q ss_pred             CCCCCC--CCCCHHCCCCCHHH-HHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             233321--26300012110222-100367883599988888-88889999999579955863688740044899999999
Q gi|254781160|r  161 HNCQIV--FADETCGSENSLEK-LHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL  236 (245)
Q Consensus       161 ~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~  236 (245)
                      ......  ............+. .......+++.++.|+|+ |.|.++++.....-.+ |.+=+-+-|=..+|+..++--
T Consensus        77 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ialvfG~E~~GLs~~~l~~~d~~v~I-P~~~~~~SLNls~AvaIvlYE  155 (244)
T 3ilk_A           77 LVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNI-PANPDYSSLNLAMAVQLVSYE  155 (244)
T ss_dssp             EEEEECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECC-CCCTTSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCEEEEE-CCCCCCCCEEHHHHHHHHHHH
T ss_conf             8889987642256443687874223203688648861666689976876155606985-589998323289999999999


Q ss_pred             H
Q ss_conf             9
Q gi|254781160|r  237 V  237 (245)
Q Consensus       237 ~  237 (245)
                      +
T Consensus       156 l  156 (244)
T 3ilk_A          156 L  156 (244)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 29 
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.30A {Bordetella pertussis}
Probab=45.10  E-value=15  Score=16.29  Aligned_cols=32  Identities=22%  Similarity=0.428  Sum_probs=23.7

Q ss_pred             CCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3135413-4454115677754444566565555
Q gi|254781160|r   81 DVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPV  112 (245)
Q Consensus        81 ~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~  112 (245)
                      ++.+++- +-.+..+-.|++-|.-+|++.++..
T Consensus        10 ~i~vVL~~~~~P~NlGaIiRsa~afG~~~v~l~   42 (173)
T 3kty_A           10 RVRFIMTQPSHPGNVGSAARAIKTMGFGELVLV   42 (173)
T ss_dssp             TEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             659999279898749999999998299889998


No 30 
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=42.96  E-value=4.5  Score=19.69  Aligned_cols=71  Identities=18%  Similarity=0.287  Sum_probs=37.3

Q ss_pred             CCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCCCC----CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             5789888999977998798753023555-23899754135555----44313541344541156777544445665655
Q gi|254781160|r   37 RMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTK----QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR  110 (245)
Q Consensus        37 Rlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~~~----~~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~  110 (245)
                      .+++||.|.+-||.   ...++.+++++ +.+++..--.-...    -|...+-++.+-....+.+++.+.++|++-+.
T Consensus       151 ~vk~Gd~I~idDG~---i~l~V~~~~~~~v~~~v~~~G~l~~~Kgvn~p~~~~~~~~ltekD~~~~i~~a~~~~vd~ia  226 (511)
T 3gg8_A          151 SVKPGNTILIADGS---LSVKVVEVGSDYVITQAQNTATIGERKNMNLPNVKVQLPVIGEKDKHDILNFGIPMGCNFIA  226 (511)
T ss_dssp             HCCTTCEEEETTTT---EEEEEEEECSSEEEEEESSCEEECSSCBEECTTCCCCSCSSCHHHHHHHHHTTTTTTCCEEE
T ss_pred             CCCCCCEEEECCCC---EEEEEEEEECCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             35789889981895---58999984021000100245445775121268752356665556378999999871999999


No 31 
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=40.34  E-value=18  Score=15.82  Aligned_cols=55  Identities=24%  Similarity=0.302  Sum_probs=31.4

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             788359998888888889999999579955863688--740044899999999999847869
Q gi|254781160|r  186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP--RILRSDTAAVAAMALVQAICGDWY  245 (245)
Q Consensus       186 ~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~--~ILR~ETA~i~als~~~~~~g~~~  245 (245)
                      ..+.+.++.|-.-|.+.+|++.+...  +.++--.+  +.|=...|+-..   +.-++|+||
T Consensus       132 ~~~~valvFGE~~GLtneeL~~cd~i--L~~Ip~~~~y~sLNvs~AvaIi---ldrl~g~~~  188 (192)
T 3dcm_X          132 TEKPVLILLGTGWGLPDEILEISDYV--LEPIRAQSDFNHLSVRAAAAII---IDRLIGENY  188 (192)
T ss_dssp             CCSCEEEEECCTTCCCHHHHTTCSEE--BCCTTTTSSCCCCCHHHHHHHH---HHHHTTTCC
T ss_pred             CCCCEEEEECCCCCCCHHHHHHCCEE--EEECCCCCCCCCCCHHHHHHHH---HHHHHCCCC
T ss_conf             38818999347779999999853977--8635799999830799999999---999858301


No 32 
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 3cw1_B
Probab=40.00  E-value=18  Score=15.78  Aligned_cols=66  Identities=15%  Similarity=0.138  Sum_probs=41.5

Q ss_pred             HHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCHHHHH
Q ss_conf             987035789888999977998798753023555238997541355554431354134454115677
Q gi|254781160|r   32 LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYM   97 (245)
Q Consensus        32 l~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~~~~~~~~~~i~l~~~~~k~~~~~~i   97 (245)
                      |++.|+--.|..|.|---+|..|.+++.+++....+.+..-..........++-...+++....++
T Consensus         3 LV~fL~kl~g~~VtVELKnG~~~~G~L~~vD~~MNl~L~nv~~t~~~g~~~~l~~v~IRG~nIRyI   68 (119)
T 1b34_A            3 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYF   68 (119)
T ss_dssp             HHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEE
T ss_pred             HHHHHHHCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEECCCEEECCCEEEEE
T ss_conf             689998669986999988996999999998598869998999998999787758699889879999


No 33 
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=39.88  E-value=12  Score=17.00  Aligned_cols=50  Identities=16%  Similarity=0.175  Sum_probs=32.8

Q ss_pred             EECHHH-HHHHHHHCCCCCCCEEEEEECCCCEEE-EEEECCC-CCCEEEEEEE
Q ss_conf             987798-759987035789888999977998798-7530235-5523899754
Q gi|254781160|r   23 KASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWL-SKISYVG-KSIRFKVEYQ   72 (245)
Q Consensus        23 ~L~~~~-~hHl~kVlRlk~Gd~i~i~dg~g~~~~-~~I~~~~-k~~~~~i~~~   72 (245)
                      .|+.+. ..|=++-++++.||+|.|.-|.-.--. +.|+.++ ++..+.++..
T Consensus        33 ~LSkeLr~ky~vRs~pVrkgD~V~V~RG~fkG~e~GKV~~V~~k~~~I~VEgv   85 (145)
T 2zkr_t           33 PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERV   85 (145)
T ss_dssp             -CCHHHHHC-CC-CCBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTC
T ss_pred             CCCHHHHHHCCCCCEEECCCCEEEEEECCCCCCCCCEEEEEEECCCEEEECCE
T ss_conf             06987898839751201369999997279788768679999807519997566


No 34 
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.44  E-value=16  Score=16.06  Aligned_cols=27  Identities=26%  Similarity=0.307  Sum_probs=23.8

Q ss_pred             CCCCCEEEEEECCCCEEEEEEECCCCC
Q ss_conf             789888999977998798753023555
Q gi|254781160|r   38 MKEGDNILLFNGKDGEWLSKISYVGKS   64 (245)
Q Consensus        38 lk~Gd~i~i~dg~g~~~~~~I~~~~k~   64 (245)
                      ..+||.|.++.|+-.-..++|..++.+
T Consensus         8 F~~GD~VeV~~GEl~~l~G~V~~v~~d   34 (59)
T 2e6z_A            8 FQPGDNVEVCEGELINLQGKILSVDGN   34 (59)
T ss_dssp             CCTTSEEEECSSTTTTCEEEECCCBTT
T ss_pred             CCCCCEEEEECCEECCCEEEEEEECCC
T ss_conf             499998999226763779999997299


No 35 
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.81  E-value=20  Score=15.46  Aligned_cols=34  Identities=24%  Similarity=0.213  Sum_probs=27.5

Q ss_pred             CCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEE
Q ss_conf             5789888999977998798753023555-238997
Q gi|254781160|r   37 RMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVE   70 (245)
Q Consensus        37 Rlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~   70 (245)
                      |..+||.|...-.+|..|.++|.++++. ..+.+.
T Consensus         9 ~f~~G~~VLarW~Dg~fYlg~I~~V~~~~~~c~V~   43 (68)
T 2e5p_A            9 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQ   43 (68)
T ss_dssp             CCCTTCEEEEECTTSSEEEEEEEEEETTTTEEEEE
T ss_pred             CCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEE
T ss_conf             63358789988406858555799982589889999


No 36 
>3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7}
Probab=36.54  E-value=10  Score=17.32  Aligned_cols=70  Identities=16%  Similarity=0.207  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCCCCCCCCEE-----EECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             5789888999977998798753023555-23899754135555443135-----41344541156777544445665655
Q gi|254781160|r   37 RMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY-----IFSPIKTNRLDYMIQKSVEMGMGAIR  110 (245)
Q Consensus        37 Rlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~~~~~~i~l-----~~~~~k~~~~~~ilqk~tELGV~~I~  110 (245)
                      .+++||.|.+-||.   ...+|.+++.+ +.+++..--.- .....+++     -++.+-....+.+++-+.++||+-|.
T Consensus       160 ~vk~Gd~I~idDG~---i~l~V~~~~~~~i~~~V~~gG~L-~s~Kgvn~p~~~~~~~~ltekd~~~~~~~a~~~~vD~ia  235 (520)
T 3khd_A          160 SVKPGNIILIADGS---VSCKVLETHEDHVITEVLNSAVI-GERKNMNLPNVKVDLPIISEKDKNDILNFAIPMGCNFIA  235 (520)
T ss_dssp             HCCC-CEEEETTTT---EEEEEEEECSSCEEEEECC-CCC-CSSCEEECTTSCCCSCSSCHHHHHHHHHTHHHHTCCEEE
T ss_pred             CCCCCCEEEEECCC---CEEEEEECCCCEEEEEEEECCEE-CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf             37999889984786---26999970588069999328684-688558505765577766500399999999874998675


No 37 
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=35.75  E-value=21  Score=15.38  Aligned_cols=30  Identities=7%  Similarity=0.020  Sum_probs=21.7

Q ss_pred             CCEEEECCCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf             3135413445-41156777544445665655
Q gi|254781160|r   81 DVQYIFSPIK-TNRLDYMIQKSVEMGMGAIR  110 (245)
Q Consensus        81 ~i~l~~~~~k-~~~~~~ilqk~tELGV~~I~  110 (245)
                      .+++++.-|+ +..+-.+++-+--+|++.++
T Consensus         4 ~l~ivL~~p~~P~NlGaI~Rta~afGv~~vi   34 (165)
T 3n4j_A            4 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHL   34 (165)
T ss_dssp             CEEEEEESCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             3699996899998199999999976997894


No 38 
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.31  E-value=21  Score=15.31  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=28.2

Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEE
Q ss_conf             357898889999779987987530235552389975
Q gi|254781160|r   36 LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY   71 (245)
Q Consensus        36 lRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~   71 (245)
                      -..++||.+...-.+|..|.|+|..+..+..+.+..
T Consensus         8 ~~~~vGd~v~ArwsD~~~Y~a~I~~~~~~~~y~V~f   43 (74)
T 2equ_A            8 FDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF   43 (74)
T ss_dssp             CCCCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEE
T ss_pred             CCCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEE
T ss_conf             667879999999799949989999987899799999


No 39 
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=34.80  E-value=22  Score=15.26  Aligned_cols=37  Identities=8%  Similarity=-0.036  Sum_probs=22.8

Q ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf             788359998888888889999999579955863688740
Q gi|254781160|r  186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL  224 (245)
Q Consensus       186 ~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~IL  224 (245)
                      ...+-+++|.+|+|+|..=...++..|.  ....+.+||
T Consensus        34 L~~sP~~lv~~e~~~s~~Merimk~~~~--~~~~~kkiL   70 (126)
T 1sf8_A           34 LTDTPAIVSTDADEMSTQMAKLFAAAGQ--KVPEVKYIF   70 (126)
T ss_dssp             CSSCCEEEECCTTSCCHHHHHHHHTTTS--CCCCCCCEE
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHCC--CCCCCCCEE
T ss_conf             5777434551776557999999987222--456556645


No 40 
>3cw1_D Small nuclear ribonucleoprotein SM D3; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens}
Probab=34.31  E-value=22  Score=15.21  Aligned_cols=38  Identities=13%  Similarity=0.158  Sum_probs=30.0

Q ss_pred             HHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEE
Q ss_conf             87035789888999977998798753023555238997
Q gi|254781160|r   33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE   70 (245)
Q Consensus        33 ~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~   70 (245)
                      .++|+--.|..|.|---+|..|.+++..++....+.+.
T Consensus         7 l~lL~~~~g~~V~VeLKng~~~~G~L~~~D~~MN~~L~   44 (126)
T 3cw1_D            7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMS   44 (126)
T ss_pred             HHHHHHHCCCEEEEEECCCCEEEEEEEEECCCEEEEEE
T ss_conf             99999717998999989984999999977285489997


No 41 
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=31.46  E-value=25  Score=14.91  Aligned_cols=36  Identities=6%  Similarity=0.235  Sum_probs=27.2

Q ss_pred             CCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEE
Q ss_conf             578988899997799879875302355523899754
Q gi|254781160|r   37 RMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ   72 (245)
Q Consensus        37 Rlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~   72 (245)
                      -+++|+.|....-+|..|.|+|+.++.+..+.+...
T Consensus         5 ~l~vG~~V~a~~~~g~~y~g~I~~v~~~~~y~V~fd   40 (118)
T 2qqr_A            5 SITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFD   40 (118)
T ss_dssp             CCCTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEET
T ss_pred             CCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEC
T ss_conf             167899999996799888889999857888999985


No 42 
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=30.18  E-value=26  Score=14.77  Aligned_cols=36  Identities=14%  Similarity=0.171  Sum_probs=28.3

Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEE
Q ss_conf             35789888999977998798753023555-2389975
Q gi|254781160|r   36 LRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEY   71 (245)
Q Consensus        36 lRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~   71 (245)
                      .+.++||.|.+---+|..|.++|..+++. ..+-+..
T Consensus        12 ~~f~~GedVLarwtDg~fYlgtI~~V~~~~~~clV~F   48 (66)
T 2eqj_A           12 CKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIF   48 (66)
T ss_dssp             CCSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred             HHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEE
T ss_conf             1015798899993168687767899834797799999


No 43 
>2qiw_A PEP phosphonomutase; NP_600288.1, structural genomics, joint center for structural genomics, JCSG; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=29.55  E-value=26  Score=14.70  Aligned_cols=37  Identities=24%  Similarity=0.301  Sum_probs=24.1

Q ss_pred             CEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCH
Q ss_conf             35999888888888999999957995586368874004
Q gi|254781160|r  189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS  226 (245)
Q Consensus       189 ~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~  226 (245)
                      .+.++.+|-|+.-.--.+.|.+.|+ ..|+.||..+|+
T Consensus       206 Pv~~~~~~~~~~~~~~~~~l~~lG~-~~v~~gp~~~~~  242 (255)
T 2qiw_A          206 PVNITAHPVDGHGAGDLATLAGLGV-RRVTFGPLWQKW  242 (255)
T ss_dssp             CBEEECBTTTBBTTBCHHHHHHTTC-CEEECTTHHHHH
T ss_pred             CEEEEEECCCCCCCCCHHHHHHCCC-CEEEECCHHHHH
T ss_conf             8689983478899998999997599-599988499999


No 44 
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=29.14  E-value=27  Score=14.66  Aligned_cols=95  Identities=18%  Similarity=0.243  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf             35788999975123443433200000011233322333212630001211022210036788359998888888889999
Q gi|254781160|r  127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE  206 (245)
Q Consensus       127 ~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~  206 (245)
                      +..-+.++|.+.+-.++|-+..|......++.=-... .+|.-+..++...++.+..  ..+.+-++  |-||.+.+...
T Consensus       107 ~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~v-K~FPA~~~Gg~~~lkal~~--p~p~i~~~--ptGGI~~~n~~  181 (225)
T 1mxs_A          107 ITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRF-KLFPAEISGGVAAIKAFGG--PFGDIRFC--PTGGVNPANVR  181 (225)
T ss_dssp             CCHHHHHHHHHCSSCEECEECSHHHHHHHHTTTCCEE-EETTHHHHTHHHHHHHHHT--TTTTCEEE--EBSSCCTTTHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE-EECCCCCCCCHHHHHHHCC--CCCCCCEE--EECCCCHHHHH
T ss_conf             9599999998659972578699899999998699818-7764010279999986406--56677166--30798988999


Q ss_pred             HHHHCCCCEEEECCCCCCCHH
Q ss_conf             999579955863688740044
Q gi|254781160|r  207 TLHSLPFVTPLSLGPRILRSD  227 (245)
Q Consensus       207 ~l~~~~~~~~vsLG~~ILR~E  227 (245)
                      .+-+.+.+..+ .|..++..+
T Consensus       182 ~yl~~~~v~~v-ggs~l~~~~  201 (225)
T 1mxs_A          182 NYMALPNVMCV-GTTWMLDSS  201 (225)
T ss_dssp             HHHHSTTBCCE-EECTTSCHH
T ss_pred             HHHHCCCCEEE-ECCCCCCHH
T ss_conf             99957891999-864447987


No 45 
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=28.35  E-value=18  Score=15.77  Aligned_cols=119  Identities=8%  Similarity=0.067  Sum_probs=56.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCC
Q ss_conf             115677754444566565555420220112212233578899997512344343320000001123332--------233
Q gi|254781160|r   92 NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--------HNC  163 (245)
Q Consensus        92 ~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~--------~~~  163 (245)
                      +.|..-++.+.++|++.|++-.-.  .....+.++.++.+..| .      -..+.++.-|+...+...        ...
T Consensus       111 ~~M~~dI~~~k~~Ga~GvVfG~L~--~dg~ID~~~~~~Lv~~a-~------~l~vTFHRAfD~~~d~~~ale~Li~lG~~  181 (287)
T 3iwp_A          111 EVMKADIRLAKLYGADGLVFGALT--EDGHIDKELCMSLMAIC-R------PLPVTFHRAFDMVHDPMAALETLLTLGFE  181 (287)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCBC--TTSCBCHHHHHHHHHHH-T------TSCEEECGGGGGCSCHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEEC--CCCCCCHHHHHHHHHHH-C------CCCEEEEEHHHHCCCHHHHHHHHHHCCCC
T ss_conf             999999999998699978995568--99984999999999982-8------98569740056408999999999973988


Q ss_pred             CCCCCCCHHCCCCCHHHHHCCC--CCCCEEEEECCCCCCCHHHHHHH-HHCCCCEEEECCCC
Q ss_conf             3212630001211022210036--78835999888888888999999-95799558636887
Q gi|254781160|r  164 QIVFADETCGSENSLEKLHAIA--HIPNVAILIGPEGGYHSEEKETL-HSLPFVTPLSLGPR  222 (245)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~IGPEGGfs~~E~~~l-~~~~~~~~vsLG~~  222 (245)
                      .++-.--.......++.+....  ....+.|+.|  ||.+.+-+..+ +..|+ ..++++.+
T Consensus       182 rILTSGg~~~A~~G~~~L~~Lv~~a~~~I~Im~G--GGV~~~Ni~~l~~~~G~-~eiH~Sa~  240 (287)
T 3iwp_A          182 RVLTSGCDSSALEGLPLIKRLIEQAKGRIVVMPG--GGITDRNLQRILEGSGA-TEFHCSAR  240 (287)
T ss_dssp             EEEECTTSSSTTTTHHHHHHHHHHHTTSSEEEEC--TTCCTTTHHHHHHHHCC-SEEEECCE
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEC--CCCCHHHHHHHHHHCCC-CEEEECCC
T ss_conf             5676888566888689999999973899469856--98898999999997199-18976888


No 46 
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=28.30  E-value=22  Score=15.22  Aligned_cols=97  Identities=15%  Similarity=0.253  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             78899997512344343320000001123332233321263000121102221003678835999888888888999999
Q gi|254781160|r  129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL  208 (245)
Q Consensus       129 ~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l  208 (245)
                      .-+.+.|.+.+-.++|-+..|......++.=-+.. .+|.-+.. +...++.+..  ..+.+-++  |-||.+.+....+
T Consensus        94 ~~v~~~~~~~~~~~iPGv~TptEi~~A~~~G~~~v-K~FPa~~~-G~~~lk~l~~--p~p~i~~i--ptGGV~~~n~~~~  167 (205)
T 1wa3_A           94 EEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTIL-KLFPGEVV-GPQFVKAMKG--PFPNVKFV--PTGGVNLDNVCEW  167 (205)
T ss_dssp             HHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEE-EETTHHHH-HHHHHHHHHT--TCTTCEEE--EBSSCCTTTHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE-EECCHHHC-CHHHHHHHHC--CCCCCCEE--EECCCCHHHHHHH
T ss_conf             99999999839982277487158999997699979-74512104-7889999866--58998488--6469988999999


Q ss_pred             HHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf             957995586368874004489999
Q gi|254781160|r  209 HSLPFVTPLSLGPRILRSDTAAVA  232 (245)
Q Consensus       209 ~~~~~~~~vsLG~~ILR~ETA~i~  232 (245)
                      -++|. ..|.+|..+.+.+...+.
T Consensus       168 l~aGa-~avg~Gs~l~~~~~~~i~  190 (205)
T 1wa3_A          168 FKAGV-LAVGVGSALVKGTPDEVR  190 (205)
T ss_dssp             HHHTC-SCEEECHHHHCSCHHHHH
T ss_pred             HHCCC-EEEEECHHHCCCCHHHHH
T ss_conf             98899-299983671589999999


No 47 
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 1ojx_A 1ok4_A 1ok6_A
Probab=27.93  E-value=28  Score=14.52  Aligned_cols=140  Identities=12%  Similarity=0.087  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----C
Q ss_conf             567775444456656555542022011221223357889999751234434332000000112333223332126----3
Q gi|254781160|r   94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA----D  169 (245)
Q Consensus        94 ~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~----~  169 (245)
                      .-+-++.+.+||++.+-....-.+......+    .-+-+..++|.+.-+|.+-.+.....-..+..+.+.+.++    .
T Consensus        94 ~~~~ve~a~~lGAdaV~~~v~~g~~~e~~~l----~~~a~v~~e~~~~glP~~~e~~p~g~~~~~~~~~e~v~~aaRia~  169 (263)
T 1w8s_A           94 ANCSVEEAVSLGASAVGYTIYPGSGFEWKMF----EELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIAL  169 (263)
T ss_dssp             ESSCHHHHHHTTCSEEEEEECTTSTTHHHHH----HHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHCCCCEEEEEEECCCCHHHHHH----HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf             0147999972754768999716996479999----999999999998099379876644886446677789999999999


Q ss_pred             CH---------HCCCCCHHHHHCCCCCCCEEEEECCCCCCCH---HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             00---------0121102221003678835999888888888---99999995799558636887400448999999999
Q gi|254781160|r  170 ET---------CGSENSLEKLHAIAHIPNVAILIGPEGGYHS---EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV  237 (245)
Q Consensus       170 ~~---------~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~---~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~  237 (245)
                      +-         ..+.......-.....-.+.+.-||-++-..   +.....-..| +..+..|.+|.-.+.. ...+..+
T Consensus       170 ELGADiiK~~~~g~~~~~~~~v~~a~~~PVli~GG~~~~~~~~~l~~v~~a~~~G-a~G~~~GRnv~q~~~p-~~~~~al  247 (263)
T 1w8s_A          170 ELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAG-ALGIAVGRNVWQRRDA-LKFARAL  247 (263)
T ss_dssp             HHTCSEEEEECCSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTT-CCEEEESHHHHTSTTH-HHHHHHH
T ss_pred             HHCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC-CEEEEECCHHHCCCCH-HHHHHHH
T ss_conf             8399846533799879888888714677668963898899999999999999879-9699845311168789-9999999


Q ss_pred             HH
Q ss_conf             99
Q gi|254781160|r  238 QA  239 (245)
Q Consensus       238 ~~  239 (245)
                      +.
T Consensus       248 ~~  249 (263)
T 1w8s_A          248 AE  249 (263)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99


No 48 
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=26.83  E-value=29  Score=14.40  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=22.3

Q ss_pred             HCCCCCCCEEEEEEC--CCCEEEEEEECCCC
Q ss_conf             035789888999977--99879875302355
Q gi|254781160|r   35 VLRMKEGDNILLFNG--KDGEWLSKISYVGK   63 (245)
Q Consensus        35 VlRlk~Gd~i~i~dg--~g~~~~~~I~~~~k   63 (245)
                      -|.++.||.|.|.+.  ++++|.+++...++
T Consensus        26 eLs~~~GD~i~vl~~~~~~gWw~g~~~~~g~   56 (70)
T 1gcq_C           26 FLRLNPGDIVELTKAEAEHNWWEGRNTATNE   56 (70)
T ss_dssp             BCCBCTTCEEEEEECCTTCSEEEEEETTTTE
T ss_pred             EEEECCCCEEEEEEECCCCCEEEEEECCCCC
T ss_conf             6308699999995514889989999888997


No 49 
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=26.74  E-value=25  Score=14.91  Aligned_cols=92  Identities=17%  Similarity=0.168  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf             78899997512344343320000001123332233321263000121102221003678835999888888888999999
Q gi|254781160|r  129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL  208 (245)
Q Consensus       129 ~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l  208 (245)
                      .-+.++|++.+-+++|-+..|......++.--... .+|.-+..+. ..+..+...... .  +-+=|-||.+.+-...+
T Consensus        91 ~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~v-K~FPa~~~G~-~~lk~l~~~~p~-~--i~~iptGGI~~~N~~~y  165 (212)
T 2v82_A           91 SEVIRRAVGYGMTVCPGCATATEAFTALEAGAQAL-KIFPSSAFGP-QYIKALKAVLPS-D--IAVFAVGGVTPENLAQW  165 (212)
T ss_dssp             HHHHHHHHHTTCEEECEECSHHHHHHHHHTTCSEE-EETTHHHHCH-HHHHHHHTTSCT-T--CEEEEESSCCTTTHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE-EECCCCCCCH-HHHHHHHCCCCC-C--CEEEEECCCCHHHHHHH
T ss_conf             89999999758763388487699999998298858-6325343578-899875266877-8--77974279998999999


Q ss_pred             HHCCCCEEEECCCCCCCH
Q ss_conf             957995586368874004
Q gi|254781160|r  209 HSLPFVTPLSLGPRILRS  226 (245)
Q Consensus       209 ~~~~~~~~vsLG~~ILR~  226 (245)
                      -++|. ..+.+|..+.+.
T Consensus       166 l~aGa-~~v~iGs~l~~~  182 (212)
T 2v82_A          166 IDAGC-AGAGLGSDLYRA  182 (212)
T ss_dssp             HHHTC-SEEEECTTTCCT
T ss_pred             HHCCC-EEEEECHHHCCC
T ss_conf             98599-699987897389


No 50 
>1uf2_K Structural protein P7; virus components, icosahedral virus; 3.50A {Rice dwarf virus}
Probab=24.71  E-value=25  Score=14.81  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=15.1

Q ss_pred             EEEECCCCCCCHHHHHHHHHC
Q ss_conf             999888888888999999957
Q gi|254781160|r  191 AILIGPEGGYHSEEKETLHSL  211 (245)
Q Consensus       191 ~i~IGPEGGfs~~E~~~l~~~  211 (245)
                      -++|--++=||.+|...|.+.
T Consensus       283 evFi~~~~vFs~~E~s~l~el  303 (506)
T 1uf2_K          283 AVFINESEPFSDKERSELSEL  303 (506)
T ss_pred             CEEECCCCCCCHHHHHHHHHH
T ss_conf             305504456563556667887


No 51 
>1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A
Probab=24.53  E-value=31  Score=14.22  Aligned_cols=32  Identities=25%  Similarity=0.461  Sum_probs=26.3

Q ss_pred             CCCCC-CHHHHHHHHHCCCCEEEECCCCCCCHHH
Q ss_conf             88888-8899999995799558636887400448
Q gi|254781160|r  196 PEGGY-HSEEKETLHSLPFVTPLSLGPRILRSDT  228 (245)
Q Consensus       196 PEGGf-s~~E~~~l~~~~~~~~vsLG~~ILR~ET  228 (245)
                      .|+|. +.+++..+.+.|+ ..+=.|..++|++-
T Consensus       208 aESGI~t~ed~~~l~~~G~-davLIGeslm~~~d  240 (247)
T 1a53_A          208 AESGISERNEIEELRKLGV-NAFLIGSSLMRNPE  240 (247)
T ss_dssp             EESCCCCHHHHHHHHHTTC-CEEEECHHHHHCTT
T ss_pred             EECCCCCHHHHHHHHHCCC-CEEEECHHHCCCCC
T ss_conf             9647999999999997799-99998988758984


No 52 
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=24.27  E-value=17  Score=15.99  Aligned_cols=123  Identities=9%  Similarity=0.092  Sum_probs=60.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CC
Q ss_conf             4115677754444566565555420220112212233578899997512344343320000001123332--------23
Q gi|254781160|r   91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--------HN  162 (245)
Q Consensus        91 ~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~--------~~  162 (245)
                      -+.|..=++.+-++|++.|.+-.-  +.....+.++.++.+..| .      -..+.++.-|+...+...        ..
T Consensus        72 ~~~M~~dI~~~k~~G~dGvVfG~L--~~dg~iD~~~~~~Li~~a-~------~l~vTFHRAfD~~~d~~~al~~Li~lG~  142 (256)
T 1twd_A           72 FAAILEDVRTVRELGFPGLVTGVL--DVDGNVDMPRMEKIMAAA-G------PLAVTFHRAFDMCANPLYTLNNLAELGI  142 (256)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCB--CTTSSBCHHHHHHHHHHH-T------TSEEEECGGGGGCSCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHCCCCEEEEEEE--CCCCCCCHHHHHHHHHHH-C------CCCEEEECCHHHHCCHHHHHHHHHHCCC
T ss_conf             999999999999859996788668--899984999999999985-7------6864774425652899999999997598


Q ss_pred             CCCCCCCCHHCCCCCHHHHHCCC-CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf             33212630001211022210036-7883599988888888899999995799558636887400
Q gi|254781160|r  163 CQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR  225 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR  225 (245)
                      +.++-.-........++.+.... ......|+  |-||.+++-+..+.+.|+ ..++++.+..+
T Consensus       143 ~rILTSG~~~~a~~G~~~L~~L~~~a~~~iIm--~GgGI~~~Ni~~l~~tG~-~e~H~Sa~~~~  203 (256)
T 1twd_A          143 ARVLTSGQKSDALQGLSKIMELIAHRDAPIIM--AGAGVRAENLHHFLDAGV-LEVHSSAGAWQ  203 (256)
T ss_dssp             CEEEECTTSSSTTTTHHHHHHHHTSSSCCEEE--EESSCCTTTHHHHHHHTC-SEEEECCEEEE
T ss_pred             CEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE--EECCCCHHHHHHHHHCCC-CEEEECCCCCC
T ss_conf             97865789677777699999999856993899--727779999999997798-87987878656


No 53 
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus erythematosus, SLE; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=23.67  E-value=34  Score=14.02  Aligned_cols=63  Identities=11%  Similarity=0.068  Sum_probs=38.8

Q ss_pred             HHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCHHH
Q ss_conf             870357898889999779987987530235552389975413555544313541344541156
Q gi|254781160|r   33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD   95 (245)
Q Consensus        33 ~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~~~~~~~~~~i~l~~~~~k~~~~~   95 (245)
                      .+.|+--.|..|.+---+|..+.+.+..++....+.+..-...........+--..+|++...
T Consensus         7 l~lL~~~~g~~V~VeLk~g~~~~G~L~~~D~~mNl~L~d~~~~~~~~~~~~~~~~~IRG~~I~   69 (75)
T 1d3b_A            7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIR   69 (75)
T ss_dssp             HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEE
T ss_pred             HHHHHHCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEEEEEEECCCCEEECCEEEEECCEEE
T ss_conf             999976689989999999829999999886873899989999908995417376999899999


No 54 
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, histone acetyltranferase, structural genomics; NMR {Mus musculus} SCOP: b.34.13.3
Probab=23.18  E-value=34  Score=13.96  Aligned_cols=26  Identities=8%  Similarity=-0.002  Sum_probs=22.3

Q ss_pred             CCCCCCEEEEEECCCCEEEEEEECCC
Q ss_conf             57898889999779987987530235
Q gi|254781160|r   37 RMKEGDNILLFNGKDGEWLSKISYVG   62 (245)
Q Consensus        37 Rlk~Gd~i~i~dg~g~~~~~~I~~~~   62 (245)
                      -+.+|+.+.|....|..|.|+|..+.
T Consensus        12 ~~~vG~~~~v~~~dg~~~~A~Vl~~r   37 (133)
T 1wgs_A           12 TVEIGETYLCRRPDSTWHSAEVIQSR   37 (133)
T ss_dssp             CCCTTSEEEEEETTTEEEEEEEEEEE
T ss_pred             CCCCCCEEEEEECCCCEEEEEEEEEE
T ss_conf             47029899999389988667999986


No 55 
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=23.16  E-value=34  Score=13.96  Aligned_cols=24  Identities=13%  Similarity=0.267  Sum_probs=19.0

Q ss_pred             CCCCCCEEEEEECCCCEEEEEEEC
Q ss_conf             578988899997799879875302
Q gi|254781160|r   37 RMKEGDNILLFNGKDGEWLSKISY   60 (245)
Q Consensus        37 Rlk~Gd~i~i~dg~g~~~~~~I~~   60 (245)
                      ..+.||.|.++|++|..|...++.
T Consensus         6 ~~~~Gd~V~l~~~~~~~~~~~l~~   29 (280)
T 1i9g_A            6 PFSIGERVQLTDAKGRRYTMSLTP   29 (280)
T ss_dssp             SCCTTCEEEEEETTCCEEEEECCT
T ss_pred             CCCCCCEEEEEECCCCEEEEEECC
T ss_conf             999998899997899789999879


No 56 
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=23.10  E-value=35  Score=13.95  Aligned_cols=27  Identities=11%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             CCCCCCCEEEEEECCCCEEEEEEECCC
Q ss_conf             357898889999779987987530235
Q gi|254781160|r   36 LRMKEGDNILLFNGKDGEWLSKISYVG   62 (245)
Q Consensus        36 lRlk~Gd~i~i~dg~g~~~~~~I~~~~   62 (245)
                      ...++|+.+++.|-.|..+.|.|+.++
T Consensus        18 ~~F~vG~kLEa~D~~~~w~~a~v~~v~   44 (88)
T 2eqm_A           18 ITFEIGARLEALDYLQKWYPSRIEKID   44 (88)
T ss_dssp             CCCCSSCEEEEECTTSCEEEEEEEEEE
T ss_pred             CCCCCCCEEEEECCCCCEEEEEEEEEE
T ss_conf             634548899998389996999999996


No 57 
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=22.97  E-value=35  Score=13.93  Aligned_cols=26  Identities=12%  Similarity=0.082  Sum_probs=19.9

Q ss_pred             CCCCCCEEEECCCCCCCCEEEECHHH
Q ss_conf             76778777408544788889987798
Q gi|254781160|r    3 IHSHLKRLFVDFPLCIKTQGKASGDQ   28 (245)
Q Consensus         3 ~~~~m~R~f~~~~l~~~~~i~L~~~~   28 (245)
                      +-|++||+|++.....+..+.+..+.
T Consensus        18 ~~mkiPrlYVEg~~~e~~~vvie~~g   43 (169)
T 3d4r_A           18 QGMKIPKIYVEGELNDGDRVAIEKDG   43 (169)
T ss_dssp             TTCCCCEEEEETCCCSSCEEEEEGGG
T ss_pred             CCCCCCEEEEECCCCCCCEEEEEECC
T ss_conf             33656459996122558689996089


No 58 
>1xi6_A Extragenic suppressor; structural genomics, southeast collaboratory for structural genomics hyperthermophIle, PSI; 2.80A {Pyrococcus furiosus} SCOP: e.7.1.1
Probab=22.94  E-value=35  Score=13.93  Aligned_cols=10  Identities=0%  Similarity=-0.074  Sum_probs=6.2

Q ss_pred             HHHHHHHCCC
Q ss_conf             7599870357
Q gi|254781160|r   29 YHYLAHVLRM   38 (245)
Q Consensus        29 ~hHl~kVlRl   38 (245)
                      -.++.+.|+-
T Consensus        59 e~~i~~~L~~   68 (262)
T 1xi6_A           59 EDLILSRITE   68 (262)
T ss_dssp             HHHHHHHHGG
T ss_pred             HHHHHHHHHH
T ss_conf             9999999986


No 59 
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=22.55  E-value=35  Score=13.88  Aligned_cols=29  Identities=7%  Similarity=0.212  Sum_probs=17.5

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             4313541344541156777544445665655
Q gi|254781160|r   80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR  110 (245)
Q Consensus        80 ~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~  110 (245)
                      .+++|+=+..  .+.+|+=+...+||.+++.
T Consensus       105 ~~v~LvEs~~--KK~~FL~~v~~~LgL~Nv~  133 (249)
T 3g89_A          105 LELVLVDATR--KKVAFVERAIEVLGLKGAR  133 (249)
T ss_dssp             CEEEEEESCH--HHHHHHHHHHHHHTCSSEE
T ss_pred             CEEEEECCCH--HHHHHHHHHHHHCCCCCCE
T ss_conf             3299980827--8999999999982999845


No 60 
>1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli}
Probab=22.45  E-value=36  Score=13.86  Aligned_cols=22  Identities=18%  Similarity=0.317  Sum_probs=10.0

Q ss_pred             EECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             41344541156777544445665
Q gi|254781160|r   85 IFSPIKTNRLDYMIQKSVEMGMG  107 (245)
Q Consensus        85 ~~~~~k~~~~~~ilqk~tELGV~  107 (245)
                      +++..|....+. ++.+.++|+.
T Consensus        31 LiaVsK~~~~e~-I~~a~~~G~r   52 (234)
T 1w8g_A           31 LLAVSKTKPASA-IAEAIDAGQR   52 (234)
T ss_dssp             EEEECTTSCHHH-HHHHHHTTCC
T ss_pred             EEEEECCCCHHH-HHHHHHCCCC
T ss_conf             999989989999-9999986997


No 61 
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, ligase, metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A
Probab=22.31  E-value=36  Score=13.85  Aligned_cols=27  Identities=7%  Similarity=0.049  Sum_probs=23.2

Q ss_pred             CCCCCEEEEEE-CCCCEEEEEEECCCCC
Q ss_conf             78988899997-7998798753023555
Q gi|254781160|r   38 MKEGDNILLFN-GKDGEWLSKISYVGKS   64 (245)
Q Consensus        38 lk~Gd~i~i~d-g~g~~~~~~I~~~~k~   64 (245)
                      .|.||.|.+.| .-|.++.|.|..+.++
T Consensus        11 YKvgd~VD~rD~~~GAWFEA~Iv~I~~k   38 (161)
T 3db3_A           11 YKVNEYVDARDTNMGAWFEAQVVRVTRK   38 (161)
T ss_dssp             SCTTCEEEEECTTTCCEEEEEEEEEEEC
T ss_pred             EECCCEEEEEECCCCEEEEEEEEEEECC
T ss_conf             8706578885467552589999999706


No 62 
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A
Probab=22.30  E-value=36  Score=13.85  Aligned_cols=103  Identities=23%  Similarity=0.280  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf             35788999975123443433200000011233322333212630001211022210036788359998888888889999
Q gi|254781160|r  127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE  206 (245)
Q Consensus       127 ~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~  206 (245)
                      +..-+.+.|.|.+-+++|=+..|......++.=-... .+|.-+..+....++.+..  ..+.+-++  |=||.+.+...
T Consensus        92 ~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~v-K~FPA~~~Gg~~~lk~l~~--p~p~i~f~--ptGGV~~~n~~  166 (207)
T 2yw3_A           92 LLEEVAALAQARGVPYLPGVLTPTEVERALALGLSAL-KFFPAEPFQGVRVLRAYAE--VFPEVRFL--PTGGIKEEHLP  166 (207)
T ss_dssp             CCHHHHHHHHHHTCCEEEEECSHHHHHHHHHTTCCEE-EETTTTTTTHHHHHHHHHH--HCTTCEEE--EBSSCCGGGHH
T ss_pred             CCHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCEE-EECHHHHCCCHHHHHHHHC--CCCCCCEE--EECCCCHHHHH
T ss_conf             8699999999629975178799999999997699979-8660331378999976534--89988089--73798999999


Q ss_pred             HHHHCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf             99957995586368874004489999999
Q gi|254781160|r  207 TLHSLPFVTPLSLGPRILRSDTAAVAAMA  235 (245)
Q Consensus       207 ~l~~~~~~~~vsLG~~ILR~ETA~i~als  235 (245)
                      .+-+.+.+..|. |..+.+.+-..+...+
T Consensus       167 ~~la~~~v~avG-gs~l~~~d~~~i~~~~  194 (207)
T 2yw3_A          167 HYAALPNLLAVG-GSWLLQGNLEAVRAKV  194 (207)
T ss_dssp             HHHTCSSBSCEE-ESGGGSSCHHHHHHHH
T ss_pred             HHHCCCCEEEEE-CHHHCCCCHHHHHHHH
T ss_conf             998059869998-0771388999999999


No 63 
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=22.07  E-value=15  Score=16.32  Aligned_cols=47  Identities=30%  Similarity=0.410  Sum_probs=29.6

Q ss_pred             CCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEE-EEECCC
Q ss_conf             77877740854478888998779875998703578988899-997799
Q gi|254781160|r    5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL-LFNGKD   51 (245)
Q Consensus         5 ~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~-i~dg~g   51 (245)
                      |-|+|+|--......-.-.+..+....+...+++++|++|. +.-|.|
T Consensus         1 ~d~~~~~~~~e~~~~~~~P~~~~~~~~l~~~l~l~pg~rVLDiGcG~G   48 (256)
T 1nkv_A            1 MDIPRIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSG   48 (256)
T ss_dssp             ---CCHHHHHTSSCSSSSSCCHHHHHHHHHHTCCCTTCEEEEETCTTC
T ss_pred             CCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf             995213660232042348888999999999708999999999858888


No 64 
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}
Probab=21.81  E-value=37  Score=13.78  Aligned_cols=25  Identities=44%  Similarity=0.789  Sum_probs=20.1

Q ss_pred             HHCCCCCCCEEEEEE--CCCCEEEEEE
Q ss_conf             703578988899997--7998798753
Q gi|254781160|r   34 HVLRMKEGDNILLFN--GKDGEWLSKI   58 (245)
Q Consensus        34 kVlRlk~Gd~i~i~d--g~g~~~~~~I   58 (245)
                      .-|-++.||.|.|.+  +.+++|.|++
T Consensus        20 dELsf~kGDiI~Vl~~~~~~gWw~G~~   46 (142)
T 2kbt_A           20 SELSLKEGDIIKILNKKGQQGWWRGEI   46 (142)
T ss_dssp             SBCCCCTTCEEEEEECCCSSSEEEEEE
T ss_pred             CCCCCCCCCEEEEEEEECCCCEEEEEE
T ss_conf             984787999999988408999689998


Done!