Query gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 245 No_of_seqs 113 out of 2755 Neff 7.5 Searched_HMMs 23785 Date Wed Jun 1 01:33:04 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781160.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1vhy_A Hypothetical protein HI 100.0 0 0 444.4 19.8 236 4-244 2-245 (257) 2 1vhk_A Hypothetical protein YQ 100.0 0 0 436.8 17.4 239 5-244 1-258 (268) 3 3kw2_A Probable R-RNA methyltr 100.0 0 0 423.4 15.3 238 4-245 2-247 (257) 4 2egv_A UPF0088 protein AQ_165; 100.0 0 0 399.0 19.9 222 7-239 1-228 (229) 5 1v6z_A Hypothetical protein TT 100.0 0 0 398.1 16.6 224 5-243 1-228 (228) 6 1z85_A Hypothetical protein TM 100.0 0 0 392.1 17.0 222 4-243 10-233 (234) 7 2qwv_A UPF0217 protein VC_A105 94.3 0.033 1.4E-06 33.6 3.6 90 144-240 114-204 (208) 8 2qmm_A UPF0217 protein AF_1056 94.0 0.13 5.5E-06 29.7 6.3 82 149-237 111-192 (197) 9 1v2x_A TRNA (GM18) methyltrans 92.9 0.076 3.2E-06 31.3 3.6 117 78-209 19-137 (194) 10 2ha8_A TAR (HIV-1) RNA loop bi 91.6 0.26 1.1E-05 27.7 5.1 117 79-208 24-143 (184) 11 1to0_A Hypothetical UPF0247 pr 90.5 0.52 2.2E-05 25.8 5.7 77 156-237 64-145 (167) 12 1vh0_A Hypothetical UPF0247 pr 86.1 1.2 5.2E-05 23.4 5.2 76 157-237 67-147 (161) 13 1o6d_A Hypothetical UPF0247 pr 86.1 0.77 3.2E-05 24.7 4.2 76 157-237 60-139 (163) 14 3ic6_A Putative methylase fami 83.9 1.3 5.4E-05 23.3 4.5 159 80-240 16-193 (223) 15 2v3j_A Essential for mitotic g 75.2 2.3 9.7E-05 21.6 3.5 114 122-242 132-250 (258) 16 1ipa_A RRMH, RNA 2'-O-ribose m 75.0 4.3 0.00018 19.8 4.9 114 81-210 116-231 (274) 17 1gz0_A Hypothetical tRNA/RRNA 75.0 1.6 6.6E-05 22.7 2.6 136 82-234 107-245 (253) 18 1k3r_A Conserved protein MT000 73.7 4.7 0.0002 19.6 5.4 54 183-240 206-260 (268) 19 1zjr_A TRNA (guanosine-2'-O-)- 69.6 2.7 0.00011 21.1 2.8 140 79-235 23-166 (211) 20 3nk6_A 23S rRNA methyltransfer 69.2 3.7 0.00015 20.3 3.4 114 82-208 121-235 (277) 21 2i6d_A RNA methyltransferase, 58.8 7.6 0.00032 18.2 3.4 114 82-207 105-219 (257) 22 1x7o_A Avirb, rRNA methyltrans 58.3 7.2 0.0003 18.4 3.2 115 81-209 126-247 (287) 23 3onp_A TRNA/RRNA methyltransfe 54.3 4.8 0.0002 19.5 1.8 138 82-235 6-156 (249) 24 3e5y_A TRMH family RNA methylt 51.4 5.9 0.00025 19.0 1.8 112 81-207 5-119 (160) 25 1vq8_T 50S ribosomal protein L 50.3 10 0.00044 17.3 3.0 50 21-70 25-76 (120) 26 2wwb_L 60S ribosomal protein L 45.9 15 0.00062 16.4 3.3 52 20-71 31-84 (127) 27 1ns5_A Hypothetical protein YB 45.3 15 0.00063 16.3 5.8 46 187-237 95-140 (155) 28 3ilk_A Uncharacterized tRNA/RR 45.2 12 0.00052 16.9 2.7 144 82-237 8-156 (244) 29 3kty_A Probable methyltransfer 45.1 15 0.00063 16.3 3.9 32 81-112 10-42 (173) 30 3gg8_A Pyruvate kinase; malari 43.0 4.5 0.00019 19.7 0.2 71 37-110 151-226 (511) 31 3dcm_X AdoMet, uncharacterized 40.3 18 0.00075 15.8 3.1 55 186-245 132-188 (192) 32 1b34_A Protein (small nuclear 40.0 18 0.00076 15.8 5.6 66 32-97 3-68 (119) 33 2zkr_t 60S ribosomal protein L 39.9 12 0.00049 17.0 1.9 50 23-72 33-85 (145) 34 2e6z_A Transcription elongatio 38.4 16 0.00069 16.1 2.5 27 38-64 8-34 (59) 35 2e5p_A Protein PHF1, PHD finge 36.8 20 0.00085 15.5 4.5 34 37-70 9-43 (68) 36 3khd_A Pyruvate kinase; malari 36.5 10 0.00044 17.3 1.2 70 37-110 160-235 (520) 37 3n4j_A RNA methyltransferase; 35.8 21 0.00087 15.4 2.7 30 81-110 4-34 (165) 38 2equ_A PHD finger protein 20-l 35.3 21 0.0009 15.3 4.2 36 36-71 8-43 (74) 39 1sf8_A Chaperone protein HTPG; 34.8 22 0.00091 15.3 4.0 37 186-224 34-70 (126) 40 3cw1_D Small nuclear ribonucle 34.3 22 0.00093 15.2 4.0 38 33-70 7-44 (126) 41 2qqr_A JMJC domain-containing 31.5 25 0.001 14.9 4.5 36 37-72 5-40 (118) 42 2eqj_A Metal-response element- 30.2 26 0.0011 14.8 4.5 36 36-71 12-48 (66) 43 2qiw_A PEP phosphonomutase; NP 29.6 26 0.0011 14.7 3.0 37 189-226 206-242 (255) 44 1mxs_A KDPG aldolase; 2-keto-3 29.1 27 0.0011 14.7 2.4 95 127-227 107-201 (225) 45 3iwp_A Copper homeostasis prot 28.4 18 0.00076 15.8 1.3 119 92-222 111-240 (287) 46 1wa3_A 2-keto-3-deoxy-6-phosph 28.3 22 0.00092 15.2 1.8 97 129-232 94-190 (205) 47 1w8s_A FBP aldolase, fructose- 27.9 28 0.0012 14.5 3.6 140 94-239 94-249 (263) 48 1gcq_C VAV proto-oncogene; SH3 26.8 29 0.0012 14.4 4.3 29 35-63 26-56 (70) 49 2v82_A 2-dehydro-3-deoxy-6-pho 26.7 25 0.001 14.9 1.8 92 129-226 91-182 (212) 50 1uf2_K Structural protein P7; 24.7 25 0.0011 14.8 1.5 21 191-211 283-303 (506) 51 1a53_A IGPS, indole-3-glycerol 24.5 31 0.0013 14.2 2.0 32 196-228 208-240 (247) 52 1twd_A Copper homeostasis prot 24.3 17 0.0007 16.0 0.6 123 91-225 72-203 (256) 53 1d3b_A Protein (small nuclear 23.7 34 0.0014 14.0 5.2 63 33-95 7-69 (75) 54 1wgs_A MYST histone acetyltran 23.2 34 0.0014 14.0 3.5 26 37-62 12-37 (133) 55 1i9g_A Hypothetical protein RV 23.2 34 0.0014 14.0 3.7 24 37-60 6-29 (280) 56 2eqm_A PHD finger protein 20-l 23.1 35 0.0015 13.9 3.4 27 36-62 18-44 (88) 57 3d4r_A Domain of unknown funct 23.0 35 0.0015 13.9 2.5 26 3-28 18-43 (169) 58 1xi6_A Extragenic suppressor; 22.9 35 0.0015 13.9 2.0 10 29-38 59-68 (262) 59 3g89_A Ribosomal RNA small sub 22.6 35 0.0015 13.9 3.1 29 80-110 105-133 (249) 60 1w8g_A YGGS, hypothetical UPF0 22.4 36 0.0015 13.9 2.2 22 85-107 31-52 (234) 61 3db3_A E3 ubiquitin-protein li 22.3 36 0.0015 13.8 3.5 27 38-64 11-38 (161) 62 2yw3_A 4-hydroxy-2-oxoglutarat 22.3 36 0.0015 13.8 3.5 103 127-235 92-194 (207) 63 1nkv_A Hypothetical protein YJ 22.1 15 0.00063 16.3 -0.1 47 5-51 1-48 (256) 64 2kbt_A Chimera of proto-oncoge 21.8 37 0.0015 13.8 3.5 25 34-58 20-46 (142) No 1 >1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A Probab=100.00 E-value=0 Score=444.35 Aligned_cols=236 Identities=27% Similarity=0.388 Sum_probs=204.7 Q ss_pred CCCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEE-ECCCCCCCC Q ss_conf 6778777408544788889987798759987035789888999977998798753023555-23899754-135555443 Q gi|254781160|r 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQ-SRSQTKQSD 81 (245) Q Consensus 4 ~~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~-~~~~~~~~~ 81 (245) -|||||||++.++..++++.|+++++|||.||||+++||.|.|+||+|+.|.|+|++++|+ +.+++... ...+.++++ T Consensus 2 ~Mr~pR~y~~~~l~~~~~i~L~~~~~hHl~kVLRlk~Gd~I~v~dg~G~~~~a~I~~~~k~~~~~~i~~~~~~~~~~~~~ 81 (257) T 1vhy_A 2 SLRIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELADKESHLK 81 (257) T ss_dssp ---CCEEECSSCCTTCSEEECCHHHHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEECCCEECCCCCSSC T ss_pred CCCCCEEEECCCCCCCCEEECCHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEEECCCHHHCCCCCEE T ss_conf 87885798686568999898598998899983838999999999798999999999866863763100001211467404 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC Q ss_conf 135413445411567775444456656555542022011------22122335788999975123443433200000011 Q gi|254781160|r 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL 155 (245) Q Consensus 82 i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~------~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~ 155 (245) ++|+++++|+++|||+|||+|||||++|+|+.++||+.+ .+|++||++|+++|||||||+++|+|.++.+|+++ T Consensus 82 i~l~~~l~K~~~~~~il~k~tELGV~~I~p~~s~rs~~~~~~~~~~~k~~r~~~I~~eA~eQsgr~~lP~I~~~~~l~~~ 161 (257) T 1vhy_A 82 IHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLMKLQDW 161 (257) T ss_dssp EEEEEEC----CCHHHHHHHHHTTCCEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCEEHHHH T ss_pred EEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH T ss_conf 89998402338899999999974876899997102335465667887699999999999986599767865410038999 Q ss_pred CCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH Q ss_conf 23332233321263000121102221003678835999888888888999999957995586368874004489999999 Q gi|254781160|r 156 LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 (245) Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als 235 (245) +...+......+.+. .......+ .....++++++||||||||++|+++|+++|| ++++||++|||||||+|+|+| T Consensus 162 ~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~-~~vsLG~~ILR~ETA~i~als 236 (257) T 1vhy_A 162 CAENDGALKLNLHPR---AHYSIKTL-PTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAIS 236 (257) T ss_dssp HTCCSSCEEEEECTT---CCCBGGGC-CCCCTTCEEEEECCTTCCCHHHHHHHHHTTC-EEEBCCSSCCCHHHHHHHHHH T ss_pred HHHCCCCCCHHHHHH---HHHHHHHH-HHHCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHH T ss_conf 861544421011024---44456666-5303686589985777889899999998798-783268981668879999999 Q ss_pred HHHHHHCCC Q ss_conf 999984786 Q gi|254781160|r 236 LVQAICGDW 244 (245) Q Consensus 236 ~~~~~~g~~ 244 (245) ++++++||| T Consensus 237 ~~~~~~g~~ 245 (257) T 1vhy_A 237 ALQICFGDL 245 (257) T ss_dssp HHHHHHSGG T ss_pred HHHHHHCCC T ss_conf 999984865 No 2 >1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5 Probab=100.00 E-value=0 Score=436.82 Aligned_cols=239 Identities=24% Similarity=0.316 Sum_probs=206.1 Q ss_pred CCCCEEEEC---CCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCC-CCC Q ss_conf 778777408---544788889987798759987035789888999977998798753023555-238997541355-554 Q gi|254781160|r 5 SHLKRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQ-TKQ 79 (245) Q Consensus 5 ~~m~R~f~~---~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~-~~~ 79 (245) |+|+|||++ .++..+.++.|+++++|||.||||+++||.|.++||+|..|.|+|++++|+ +.+.+......+ .++ T Consensus 1 M~~~r~fi~~~~~~l~~~~~i~L~~~~~hHl~kVLR~k~Gd~i~v~dg~G~~~~a~I~~i~k~~~~~~~~~~~~~~~~~~ 80 (268) T 1vhk_A 1 MSLQRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWTNENRELP 80 (268) T ss_dssp ---CEEECSSCHHHHHSSSSEEEESHHHHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEEECCCCCCCS T ss_pred CCCCEEEECCCHHHCCCCCEEEECHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEEECCCCCCCC T ss_conf 99748996788567156997996889988999707889999999992899889999999506743344432002466897 Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 43135413445411567775444456656555542022011------221223357889999751234434332000000 Q gi|254781160|r 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 (245) Q Consensus 80 ~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~------~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~ 153 (245) ++++|+++++|+++|||+|||+|||||++|+|+.++||+.+ ..+.+||++|+++|||||||+|+|+|..+.+|+ T Consensus 81 ~~i~L~~~l~k~~~~e~ii~katELGV~~I~p~~sers~~~~~~~~~~~k~eR~~~ii~eA~eQsgr~~lP~I~~~~~l~ 160 (268) T 1vhk_A 81 IKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHSFQ 160 (268) T ss_dssp SEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBCHH T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH T ss_conf 42579984216752888998878327256781010301221222055640999999999999971999876797436999 Q ss_pred CCCCCCCCCCCCCCCCCHHCCCCCHH----HHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHH Q ss_conf 11233322333212630001211022----21003678835999888888888999999957995586368874004489 Q gi|254781160|r 154 FLLKNWDHNCQIVFADETCGSENSLE----KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTA 229 (245) Q Consensus 154 ~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA 229 (245) ++++........+++++......... ........++++++||||||||++|+++|+++|| ++|+||++||||||| T Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~IGPEGGfs~~Ei~~l~~~g~-~~v~LG~~ILR~ETA 239 (268) T 1vhk_A 161 QLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDG-VTCGLGPRILRTETA 239 (268) T ss_dssp HHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHHHHHHTTC-EEECCCSSCCCTTTH T ss_pred HHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHH T ss_conf 9997286679489974200234424678888764347981999983898899999999997899-997789981457749 Q ss_pred HHHHHHHHHHHH----CCC Q ss_conf 999999999984----786 Q gi|254781160|r 230 AVAAMALVQAIC----GDW 244 (245) Q Consensus 230 ~i~als~~~~~~----g~~ 244 (245) +|+|+|++++++ ||| T Consensus 240 ~i~als~i~~~~~~~~g~~ 258 (268) T 1vhk_A 240 PLYALSAISYQTELLRGDQ 258 (268) T ss_dssp HHHHHHHHHHHHHTCC--- T ss_pred HHHHHHHHHHHHHHHCCCC T ss_conf 9999999999988747775 No 3 >3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277} Probab=100.00 E-value=0 Score=423.37 Aligned_cols=238 Identities=21% Similarity=0.293 Sum_probs=199.9 Q ss_pred CCCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCC-CCCCC Q ss_conf 6778777408544788889987798759987035789888999977998798753023555-238997541355-55443 Q gi|254781160|r 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQ-TKQSD 81 (245) Q Consensus 4 ~~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~-~~~~~ 81 (245) .|+||+||.++ + +.++.|+++++|||.||||+++||.|.++||+|..|.|+|++++++ +.+.+......+ ..+++ T Consensus 2 ~m~l~~Fy~~~-~--~~~~~L~~~~~hHl~kVLRl~~Gd~i~v~dg~G~~~~~~I~~i~k~~~~~~i~~~~~~~~~~~~~ 78 (257) T 3kw2_A 2 SLSLPLFYAPD-I--EQSDRLPDDEAGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVCGQESWQKPWRDR 78 (257) T ss_dssp ---CCEEECTT-T--TTCSBCCHHHHHHHHTTSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECCCSSCSC T ss_pred CCCCCEEECCC-C--CCCCEECHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCCCCCE T ss_conf 84553687899-8--76661798999899965768999989999797988999999903875999862022456888864 Q ss_pred CEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 135413445-4115677754444566565555420220112212233578899997512344343320000001123332 Q gi|254781160|r 82 VQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD 160 (245) Q Consensus 82 i~l~~~~~k-~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~ 160 (245) ++|+++++| +++|||++||+|||||++|+|+.++||+++.++.+||++|+++|||||||+++|+|..+.+|+++++..+ T Consensus 79 i~l~~a~~k~~~r~d~ilqk~tELGV~~I~p~~s~~s~~~~~~~~R~~~i~~ea~eQs~r~~~P~I~~~~~l~~~l~~~~ 158 (257) T 3kw2_A 79 ITIAIAPTKQSERMEWMLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAMKQSLKASFPVIRVNIPIQTVIADTP 158 (257) T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHCCSEEEEEECTTSCCSCCCHHHHHHHHHHHHHHTTCSBCCEEEEEEEHHHHHHHSC T ss_pred EEEEECCCCCCHHHHHHHHHHHECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCC T ss_conf 89997244441079999878776184489951123203320378899999999999727553867715548999997470 Q ss_pred CCCCCCCCCCHHCCCCC-----HHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH Q ss_conf 23332126300012110-----2221003678835999888888888999999957995586368874004489999999 Q gi|254781160|r 161 HNCQIVFADETCGSENS-----LEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 (245) Q Consensus 161 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als 235 (245) .....++++........ ..........++++++||||||||++|+++|+++|| ++|+||++|||||||+|+|+| T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~IGPEGGfs~~Ei~~l~~~g~-~~vsLG~~ILRtETA~i~als 237 (257) T 3kw2_A 159 KAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILIGPEGDFSPSEVESALLAGF-APVSLGESRLRTETAGLVACQ 237 (257) T ss_dssp TTSEEEEECCCTTCC-----CCCCGGGTCCTTSCEEEEECCTTCCCHHHHHHHHHHTC-EEECCCSSCCCHHHHHHHHHH T ss_pred CCCCCEECHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHH T ss_conf 1242120001320002233200121134236881799988998999999999998799-898679982557869999999 Q ss_pred HHHHHHCCCC Q ss_conf 9999847869 Q gi|254781160|r 236 LVQAICGDWY 245 (245) Q Consensus 236 ~~~~~~g~~~ 245 (245) ++++++|+|- T Consensus 238 ~l~~L~~~~~ 247 (257) T 3kw2_A 238 WIHTLQACYR 247 (257) T ss_dssp HHHHHHHHTC T ss_pred HHHHHHHHHH T ss_conf 9999986640 No 4 >2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A* Probab=100.00 E-value=0 Score=399.02 Aligned_cols=222 Identities=16% Similarity=0.233 Sum_probs=189.2 Q ss_pred CCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCCCCCCCCEEE Q ss_conf 8777408544788889987798759987035789888999977998798753023555-238997541355554431354 Q gi|254781160|r 7 LKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQYI 85 (245) Q Consensus 7 m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~~~~~~i~l~ 85 (245) |||||+++ ..++.+.|+++++||+ ||||+++||.|.++|+ |+.|.|+|++++++ +.+++......+.+++.++|+ T Consensus 1 M~~f~~~~--~~~~~~~l~~~~~~Hi-kVlR~k~gd~i~v~~~-g~~~~~~I~~~~k~~~~~~i~~~~~~~~~~~~i~l~ 76 (229) T 2egv_A 1 MHVFYSEE--RRGNLLILREGEVKHF-RVRRIEKDEEFGVIHE-GKIYVCKVRREDKREISCEIVEELETKLPPKDITLY 76 (229) T ss_dssp CCEEECSC--EETTEEEEETHHHHHH-HHTTCCTTCCEEEEET-TEEEEEEEEEECSSEEEEEEEEECCCCCCSSEEEEE T ss_pred CCEEECCC--CCCCEEEECCCCEEEE-EEEECCCCCEEEEEEC-CEEEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEE T ss_conf 98994788--8799899770000577-8984589999999949-919999999943880899985402467998742899 Q ss_pred ECCCCC-CHHHHHHHHHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 134454-11567775444456656555542022011----2212233578899997512344343320000001123332 Q gi|254781160|r 86 FSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNT----HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD 160 (245) Q Consensus 86 ~~~~k~-~~~~~ilqk~tELGV~~I~p~~~~rs~~~----~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~ 160 (245) ++++|+ ++|||+|||+|||||++|+|+.|+||+.+ .+|++||++|+++|||||||+++|.|..|.+|+++++..+ T Consensus 77 ~~~~k~~~~~e~ilek~tELGV~~i~p~~sers~~~~~~~~~k~eR~~~ii~eA~~Qs~r~~~p~i~~~~~l~~~l~~~~ 156 (229) T 2egv_A 77 QSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAMKQSRRPIPMEIKKPVRLSDLIPESE 156 (229) T ss_dssp EECCSSTHHHHHHHHHHHHHTCCEEEEEECTTSCCCHHHHHHHHHHHHHHHHHHHHHHTCCSCCEECCCEEGGGCCCCSS T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCC T ss_conf 83211045799999998881822999874330210137787789999999999861215677875324567999985343 Q ss_pred CCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHH Q ss_conf 2333212630001211022210036788359998888888889999999579955863688740044899999999999 Q gi|254781160|r 161 HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 (245) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~ 239 (245) ....+..+++. . .........++++++||||||||++|+++|.++|| .+++||++|||||||+++|+|+++. T Consensus 157 ~~~~~~~~~~~---~---~~~~~~~~~~~~~i~IGPEGGfs~~E~~~l~~~g~-~~v~LG~~ILR~ETA~i~als~l~~ 228 (229) T 2egv_A 157 ENIILDNFYEG---V---KPKDVNLEAKTYSVVVGPEGGFSKRESQILREKGF-KSVLLEPYTLRTETAVVSIVSILMN 228 (229) T ss_dssp EEEEECTTSCC---B---CGGGSCTTCSEEEEEECCTTCCCHHHHHHHHHTTC-EEECCSSSCCCHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHC---C---CCHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCCHHHHHHHHHHHHHH T ss_conf 11111223310---3---52123320254158980788999999999998799-8976699825177599999999840 No 5 >1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A* Probab=100.00 E-value=0 Score=398.10 Aligned_cols=224 Identities=28% Similarity=0.435 Sum_probs=187.3 Q ss_pred CCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEE-EEEECCCCCCCCCE Q ss_conf 77877740854478888998779875998703578988899997799879875302355523899-75413555544313 Q gi|254781160|r 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKV-EYQSRSQTKQSDVQ 83 (245) Q Consensus 5 ~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i-~~~~~~~~~~~~i~ 83 (245) +|.||+|++. .++.|+++++|||.||||+++||.|.||||+| .|.|+|.+++++..+.+ ......+.++++++ T Consensus 1 ~~~~r~~~~~-----~~~~L~~~e~~Hl~~VLR~k~Gd~i~v~dg~g-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 74 (228) T 1v6z_A 1 MRPHRAFSPG-----LTGVLPLRETRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGPPLRYRVLEERRPEREVGVEVV 74 (228) T ss_dssp -CCCEEECGG-----GCSBCCHHHHHHHHTTSCCCTTCEEEEECSSC-EEEEEEEECCSSCEEEEEEEECCCCSCSSCEE T ss_pred CCCCEECCCC-----CEEECCHHHHHHHHHCCCCCCCCEEEEEECCC-CEEEEEEECCCCEEEEEEEECCCCCCCCCCEE T ss_conf 9986560899-----96747989988999668199999999997998-88999997168538999864054558885158 Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 5413445411567775444456656555542022011---2212233578899997512344343320000001123332 Q gi|254781160|r 84 YIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD 160 (245) Q Consensus 84 l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~---~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~ 160 (245) |++|++|+++|||++||+|||||++|+|++++||+.+ ..+++||++|+++|||||||+++|+|+.|.+|+++++... T Consensus 75 l~~~l~k~~~~e~il~k~tELGV~~I~p~~sers~~~~~~~~k~~R~~~ii~~A~~Qsgr~~lP~I~~~~~~~~~~~~~~ 154 (228) T 1v6z_A 75 LYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQ 154 (228) T ss_dssp EEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGGGCCCCSS T ss_pred EEEECCCCHHHHHHHHHHHHEEEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 99730280789999999884311799997003442122201102137899999999649944662147647788876544 Q ss_pred CCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 23332126300012110222100367883599988888888899999995799558636887400448999999999998 Q gi|254781160|r 161 HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 (245) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~~ 240 (245) . .+++.... ... .......++++++||||||||++|+++|+++|| .+++||++|||+|||+|+|+|++++. T Consensus 155 ~---~~~~~~~~---~~~--~~~~~~~~~i~i~IGPEGGfs~~Ei~~~~~~~~-~~v~LG~~ILR~ETA~i~alsi~~~~ 225 (228) T 1v6z_A 155 G---LVAHVGAT---ARV--REVLDPEKPLALAVGPEGGFAEEEVALLEARGF-TPVSLGRRILRAETAALALLALCTAG 225 (228) T ss_dssp E---EEECTTCC---CCH--HHHCCTTSCEEEEECCTTCCCHHHHHHHHHHTE-EEECCCSSCCCHHHHHHHHHHHHTGG T ss_pred H---HHHHCCCC---CCC--CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHHHHHHHHH T ss_conf 4---33200222---232--312356760699967987889999999997898-89767998245785999999999997 Q ss_pred HCC Q ss_conf 478 Q gi|254781160|r 241 CGD 243 (245) Q Consensus 241 ~g~ 243 (245) +|+ T Consensus 226 ~gr 228 (228) T 1v6z_A 226 EGR 228 (228) T ss_dssp GTC T ss_pred HCC T ss_conf 684 No 6 >1z85_A Hypothetical protein TM1380; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.12A {Thermotoga maritima MSB8} Probab=100.00 E-value=0 Score=392.06 Aligned_cols=222 Identities=24% Similarity=0.358 Sum_probs=183.4 Q ss_pred CCCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEE-CCCCCCCC Q ss_conf 6778777408544788889987798759987035789888999977998798753023555-238997541-35555443 Q gi|254781160|r 4 HSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQS-RSQTKQSD 81 (245) Q Consensus 4 ~~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~-~~~~~~~~ 81 (245) +-+|||+|+... .++.+.|+++++||| ||||+++||.|.+|||+|..|.|+|+.++|+ +.+++.... ..+.++++ T Consensus 10 ~~~Mp~~f~~~~--~~~~i~L~~~~~hhl-kVLR~k~Gd~i~l~dG~G~~~~a~I~~i~k~~~~~~i~~~~~~~~~~~~~ 86 (234) T 1z85_A 10 HHHMPHLFYGTA--QNGEVIFDEREAHHM-RVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKIVKVEEKEKEPTEK 86 (234) T ss_dssp ----CCCEECEE--ETTEEEECHHHHHHH-HHTTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEEEEEECCCCCSSC T ss_pred CCCCCEECCCCC--CCCEEEECHHHHHHH-EECCCCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEEEEEEECCCCCCC T ss_conf 177780420688--899799688996687-01638989999999897989999999904852675320024404589871 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 13541344541156777544445665655554202201122122335788999975123443433200000011233322 Q gi|254781160|r 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH 161 (245) Q Consensus 82 i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~ 161 (245) ++|+++++|+++|||+|||+|||||++|+|+.++||+.+ .+.+||++|+++|||||||+++|+|..+.+++. T Consensus 87 i~l~~~l~K~~~~e~il~k~tELGV~~i~p~~~~rs~~~-~k~~r~~~i~~~A~eQsgr~~lP~I~~~~~~~~------- 158 (234) T 1z85_A 87 LSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQHE-ISLDKAKIVVREAAKQCKRYLFPKVSFLEKLEF------- 158 (234) T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTCSEEEEECCTTCCCC-CCHHHHHHHHHHHHHHHTCSBCCEEEECCSCCC------- T ss_pred EEEEECCCCCCHHHHHHHHHHCEEEEEEEEECCCCCCCH-HHHHHHHHHHHHHHHHCCCCCCCEECHHHHCHH------- T ss_conf 899971253203799998765269999997123442200-038899999998675318865887664541400------- Q ss_pred CCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 33321263000121102221003678835999888888888999999957995586368874004489999999999984 Q gi|254781160|r 162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 (245) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~~~ 241 (245) ...+++++.... .. .......++++++||||||||++|+++|++ || .+++||++|||||||+|+|+|++++.. T Consensus 159 ~~~~~~~~~~~~-~~----~~~~~~~~~i~l~IGPEGGfs~~E~~~~~~-~~-~~v~LG~~ILR~ETA~i~als~i~~~~ 231 (234) T 1z85_A 159 SGNVITLDLDAS-QN----LLDANLEGSITVVVGPEGGFSEKERELLRS-ST-TIVSLGKKILRFETAAILTVGYIALKK 231 (234) T ss_dssp CSEEEEECC----CC----CSSSCCCSSEEEEECCTTCCCHHHHHHHHH-HS-EEC------CCHHHHHHHHHHHHHHHT T ss_pred CCCCEEEECCHH-HH----HCCCCCCCCEEEEECCCCCCCHHHHHHHHC-CC-EEEECCCCCCHHHHHHHHHHHHHHHHH T ss_conf 288366412012-21----000023684499989988999999999984-99-898789982336729999999999985 Q ss_pred CC Q ss_conf 78 Q gi|254781160|r 242 GD 243 (245) Q Consensus 242 g~ 243 (245) .+ T Consensus 232 ~~ 233 (234) T 1z85_A 232 QK 233 (234) T ss_dssp TC T ss_pred CC T ss_conf 36 No 7 >2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7 Probab=94.26 E-value=0.033 Score=33.63 Aligned_cols=90 Identities=17% Similarity=0.218 Sum_probs=61.5 Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCC Q ss_conf 43320-00000112333223332126300012110222100367883599988888888899999995799558636887 Q gi|254781160|r 144 PFIYP-PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222 (245) Q Consensus 144 P~i~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ 222 (245) |=|.. -.+|+++++.+.....+++.++...+. .......+.+++.|=-=||+++|.+.++..+. ..+||||. T Consensus 114 pGi~v~~~~fe~~l~e~~e~~~i~~Lde~G~~i------~~~~~~~~~~FILgDh~~l~~~e~~~L~~~~~-~~iSlGp~ 186 (208) T 2qwv_A 114 PGLTVRTISFEALLGELAEHHSLYMMDKKGDSI------RDIKIGPNPCFILTDHIPMPKKSGNSMKRLGV-EKISLGPK 186 (208) T ss_dssp TTEEEECCCHHHHHHHHHTTSEEEEEEEEEEET------TTSCCCSSEEEEECC----------CTTTTTC-EEEECCSS T ss_pred CCEEEECCCHHHHHHHHHCCCCEEEECCCCCCH------HHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-CEEEECCH T ss_conf 998994889999999986479789987899834------22568999879970899989789999987188-23754708 Q ss_pred CCCHHHHHHHHHHHHHHH Q ss_conf 400448999999999998 Q gi|254781160|r 223 ILRSDTAAVAAMALVQAI 240 (245) Q Consensus 223 ILR~ETA~i~als~~~~~ 240 (245) .|=+..+.+.+--.+--. T Consensus 187 ~L~a~hcI~ivh~~LDr~ 204 (208) T 2qwv_A 187 MLFASQCVTLIHNEIDHQ 204 (208) T ss_dssp CCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 888778999999987202 No 8 >2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7 Probab=94.04 E-value=0.13 Score=29.75 Aligned_cols=82 Identities=22% Similarity=0.283 Sum_probs=56.9 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHH Q ss_conf 00000112333223332126300012110222100367883599988888888899999995799558636887400448 Q gi|254781160|r 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 (245) Q Consensus 149 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ET 228 (245) -.+|++.++.+.....+++.++...+. ......++.+++.|=-=||+++|.+.+...+. ..+||||..|=+.. T Consensus 111 ~~~~e~~l~e~~~~~~~~~L~e~G~~i------~~~~~~~~~~FiL~Dh~~l~~~e~~~L~~~~~-~~iSLGp~~L~a~h 183 (197) T 2qmm_A 111 RKGLEELIEELSEKYSIIYLKEDGVDI------SNAQLPPNPLFVIGDHEGLTEEQEKVVERYAA-LKLSLSPLSLLAEQ 183 (197) T ss_dssp CCCHHHHHHHHHHHSEEEEEEEEEEEG------GGSCCCSSEEEEEECTTCCCHHHHHHHHTTCS-EEEECCSSCCCHHH T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCC------CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCCHHH T ss_conf 889999999987389589987879761------23457999879972899988779998865177-03651641016346 Q ss_pred HHHHHHHHH Q ss_conf 999999999 Q gi|254781160|r 229 AAVAAMALV 237 (245) Q Consensus 229 A~i~als~~ 237 (245) +.+.+--.+ T Consensus 184 cI~ivh~~L 192 (197) T 2qmm_A 184 CVVIAHHHL 192 (197) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 696999988 No 9 >1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Probab=92.91 E-value=0.076 Score=31.27 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=60.4 Q ss_pred CCCCCEE-EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC Q ss_conf 5443135-413445411567775444456656555542022011221223357889999751234434332000000112 Q gi|254781160|r 78 KQSDVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156 (245) Q Consensus 78 ~~~~i~l-~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l 156 (245) +.+.+.+ +-.+-.+..+-.|++-|.-.|+..++.+....+... +++. ..+......+....++.+++ T Consensus 19 ~~~~~~vvld~v~~p~NlGaIiRta~afG~~~i~~v~~~~~~~~------~~~~------~~~~~~~~~~~~~~~~~~~l 86 (194) T 1v2x_A 19 RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGVPT------FNET------SGGSHKWVYLRVHPDLHEAF 86 (194) T ss_dssp CBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGSCC------CCSS------CSSGGGTSEEEEESSHHHHH T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEECCCCCCCCCCH------HHHH------CCCCCCEEEEEEECCHHHHH T ss_conf 89998999967988465999999999749964303588667713------4431------03443124699955899999 Q ss_pred CCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHH Q ss_conf 333223332126300012110222100367883599988888-88889999999 Q gi|254781160|r 157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLH 209 (245) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~ 209 (245) +........+...+.... ...+......+++.+++|+|+ |.|++..+... T Consensus 87 ~~lk~~~~~i~~~~~~~~---~~~~~~~~~~~~~~lVfG~E~~Gls~e~l~~~d 137 (194) T 1v2x_A 87 RFLKERGFTVYATALRED---ARDFREVDYTKPTAVLFGAEKWGVSEEALALAD 137 (194) T ss_dssp HHHHHTTCEEEEECCCTT---SEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSS T ss_pred HHHHHCCCEEEECCCCCC---CCCCHHHCCCCCEEEEECCCCCCCCHHHHHHCC T ss_conf 999975982542012222---454011026888289976767889999998589 No 10 >2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Probab=91.62 E-value=0.26 Score=27.75 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=62.2 Q ss_pred CCCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCC Q ss_conf 443135413-4454115677754444566565555420220112212233578899997512344343320-00000112 Q gi|254781160|r 79 QSDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYP-PTTLEFLL 156 (245) Q Consensus 79 ~~~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~-~~~l~~~l 156 (245) .+++.++.- +-++..+-.|++-+.-+||+.++ ....+.... . .++. +..+.-.++|.+.. ..++.+++ T Consensus 24 ~~~l~vvld~i~dP~NlG~IiRta~afGv~~vi--v~~~~~~~~---~----~~~~-~s~g~~~~i~~~~~~~~~~~~~l 93 (184) T 2ha8_A 24 ISRLIVVASLIDKPTNLGGLCRTCEVFGASVLV--VGSLQCISD---K----QFQH-LSVSAEQWLPLVEVKPPQLIDYL 93 (184) T ss_dssp CCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEE--ESCGGGGGS---H----HHHH-HHTTGGGTSCEEECCGGGHHHHH T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEE--CCCCCCCCC---H----HHHH-HCCCCCCEECCCCCCCHHHHHHH T ss_conf 798799981788803799999999981997795--076445687---4----7776-40553102021134514689999 Q ss_pred CCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHH Q ss_conf 333223332126300012110222100367883599988888-8888999999 Q gi|254781160|r 157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETL 208 (245) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l 208 (245) .........+++-+...... .+......+++++++|.|+ |.|+++.+.+ T Consensus 94 ~~~k~~g~~vv~~~~~~~~~---~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~ 143 (184) T 2ha8_A 94 QQKKTEGYTIIGVEQTAKSL---DLTQYCFPEKSLLLLGNEREGIPANLIQQL 143 (184) T ss_dssp HHHHHTTCEEEEECCCTTCE---EGGGCCCCSSEEEEECBTTTBSCHHHHTTC T ss_pred HHHHHCCCEEEEECCCCCCC---CCCCCCCCCCCEEEECCCCCCCCHHHHHHC T ss_conf 99875596898731324553---332111468856886765578899999858 No 11 >1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3 Probab=90.49 E-value=0.52 Score=25.83 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=50.6 Q ss_pred CCCCCCCCCCCCCCCHHCCCCCHHH---HHCC--CCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHH Q ss_conf 2333223332126300012110222---1003--6788359998888888889999999579955863688740044899 Q gi|254781160|r 156 LKNWDHNCQIVFADETCGSENSLEK---LHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 (245) Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~ 230 (245) ++..+.++.+++.|+.....++.+- +... ...+.+.++||+--||++. .++.+. ..+|||+-.+-=|-|. T Consensus 64 l~~~~~~~~~I~LDe~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGGa~G~~~~---~~~~a~--~~lSls~mT~pH~lar 138 (167) T 1to0_A 64 LSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDT---VMKRAD--EKLSFSKMTFPHQLMR 138 (167) T ss_dssp HTTSCTTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHH---HHHHCS--EEEESCSSCCCHHHHH T ss_pred HHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH---HHHHCC--CEEECCCCCCCHHHHH T ss_conf 97279998799981899753899999999999865996289996688888988---996268--5776578886189999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254781160|r 231 VAAMALV 237 (245) Q Consensus 231 i~als~~ 237 (245) ++++=++ T Consensus 139 v~L~EQl 145 (167) T 1to0_A 139 LILVEQI 145 (167) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 12 >1vh0_A Hypothetical UPF0247 protein SAV0024/SA0023; structural genomics, unknown function; 2.31A {Staphylococcus aureus} SCOP: c.116.1.3 Probab=86.09 E-value=1.2 Score=23.39 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=49.6 Q ss_pred CCCCCCCCCCCCCCHHCCCCCHHH---HHC--CCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHH Q ss_conf 333223332126300012110222---100--367883599988888888899999995799558636887400448999 Q gi|254781160|r 157 KNWDHNCQIVFADETCGSENSLEK---LHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 (245) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i 231 (245) +..+..+.+++.|+.....++.+- +.. ....+.+.++||+-.||+++=. +.+. ..+|||+-.+=-|-|.+ T Consensus 67 ~~i~~~~~~I~LDe~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGGa~G~~~~~~---~~a~--~~lSls~mTfpH~lar~ 141 (161) T 1vh0_A 67 AKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVL---QRSN--YALSFSKMTFPHQMMRV 141 (161) T ss_dssp HTSCTTSEEEEEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHH---HHCS--EEECSCSSCCCHHHHHH T ss_pred HHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHH---HHCC--CEEECCCCCCCHHHHHH T ss_conf 861899879999589888886999999999997499748999468755487999---8538--87875689874899999 Q ss_pred HHHHHH Q ss_conf 999999 Q gi|254781160|r 232 AAMALV 237 (245) Q Consensus 232 ~als~~ 237 (245) +++=++ T Consensus 142 ~l~EQl 147 (161) T 1vh0_A 142 VLIEQV 147 (161) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 13 >1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3 Probab=86.06 E-value=0.77 Score=24.71 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=47.6 Q ss_pred CCCCCCCCCCCCCCHHCCCCCHHH---HHCC-CCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH Q ss_conf 333223332126300012110222---1003-678835999888888888999999957995586368874004489999 Q gi|254781160|r 157 KNWDHNCQIVFADETCGSENSLEK---LHAI-AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 (245) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~ 232 (245) +..+..+.+++.|+.....++.+- +... ...+++.++||+--||+++- +..+. ..+|||+-++-=+-|.++ T Consensus 60 ~~i~~~~~vI~LDe~Gk~~sS~~fA~~L~~~~~~g~~i~FvIGGa~Gl~~~~---~~~a~--~~lSlS~mT~pH~larv~ 134 (163) T 1o6d_A 60 NRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEI---FAKAH--RVFSLSKMTFTHGMTVLI 134 (163) T ss_dssp TTCCTTCEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGGG---GGGCS--EEEECCSSCCCHHHHHHH T ss_pred HCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH---HHHHC--CEEECCCCCCHHHHHHHH T ss_conf 5079998899974787877869999999999836885699996788879999---98618--689568888618999999 Q ss_pred HHHHH Q ss_conf 99999 Q gi|254781160|r 233 AMALV 237 (245) Q Consensus 233 als~~ 237 (245) ++=++ T Consensus 135 L~EQi 139 (163) T 1o6d_A 135 VLEQI 139 (163) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 14 >3ic6_A Putative methylase family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.59A {Neisseria gonorrhoeae fa 1090} Probab=83.87 E-value=1.3 Score=23.27 Aligned_cols=159 Identities=14% Similarity=0.070 Sum_probs=76.4 Q ss_pred CCCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC------HH-----HHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 43135413-4454115677754444566565555420220------11-----221223357889999751234434332 Q gi|254781160|r 80 SDVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NT-----HYNMDRVRTYTISAAEQCDILTLPFIY 147 (245) Q Consensus 80 ~~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~------~~-----~~k~eR~~~ii~eA~eQsgr~~lP~i~ 147 (245) ..+.+++- +-.+..+-.|++-+.-.|++.++.+...... .. ......+...+..++..+. -++|... T Consensus 16 ~~i~vVL~~~~~P~NlGaI~Rt~~~fG~~~l~lv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ga~-~~l~~~~ 94 (223) T 3ic6_A 16 GNIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAA-DVLHNAE 94 (223) T ss_dssp GGEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGH-HHHHTCE T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCH-HHHCCEE T ss_conf 486999917988774999999999749987999746766642101222235543235676588999863648-7628237 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHH------CCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEECC Q ss_conf 0000001123332233321263000------12110222100367883599988888-8888999999957995586368 Q gi|254781160|r 148 PPTTLEFLLKNWDHNCQIVFADETC------GSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFVTPLSLG 220 (245) Q Consensus 148 ~~~~l~~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~~vsLG 220 (245) ...+++++++............... ................++.+++|+|+ |.|+++.+.+...-.+ |.+=+ T Consensus 95 ~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfGnE~~GLs~~~~~~~d~~v~I-Pm~~~ 173 (223) T 3ic6_A 95 IVATLDEALADTTIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTI-NGNPD 173 (223) T ss_dssp EESCHHHHHTTEEEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSEEECC-CCCTT T ss_pred EECHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCEEC-CCCCC T ss_conf 86149998753121111111113554420132100014555530477717997666668797898863001111-58999 Q ss_pred CCCCCHHHHHHHHHHHHHHH Q ss_conf 87400448999999999998 Q gi|254781160|r 221 PRILRSDTAAVAAMALVQAI 240 (245) Q Consensus 221 ~~ILR~ETA~i~als~~~~~ 240 (245) -.-|=.-+|+-.++.-+..+ T Consensus 174 ~~SLNvS~A~aIvlyE~~rq 193 (223) T 3ic6_A 174 YFSLNLAQAVQVVCYEIFSQ 193 (223) T ss_dssp CCCCCHHHHHHHHHHHHHHT T ss_pred CCCEEHHHHHHHHHHHHHHH T ss_conf 97327999999999999984 No 15 >2v3j_A Essential for mitotic growth 1; EMG1, rRNA processing, nuclear protein, ribonucleoprotein, ribosome biogenesis; 2.00A {Saccharomyces cerevisiae} SCOP: c.116.1.6 PDB: 2v3k_A* Probab=75.18 E-value=2.3 Score=21.62 Aligned_cols=114 Identities=8% Similarity=0.051 Sum_probs=55.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECC Q ss_conf 2122335788999975123443433200000011-----23332233321263000121102221003678835999888 Q gi|254781160|r 122 YNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL-----LKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGP 196 (245) Q Consensus 122 ~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGP 196 (245) .+..||...+..-.+ - ..+|.......+-.. .+..+..++++............+.........+++++||- T Consensus 132 Rty~RF~gLM~qLL~-k--~~I~~~~~~~~LlkvIknpvtd~lp~~~r~I~LS~~G~~v~~~~~a~~l~~~~~i~~vIGa 208 (258) T 2v3j_A 132 RTFKRFSGLMVQLLH-K--LSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGA 208 (258) T ss_dssp SSHHHHHHHHHHHHH-H--SEEEC---CCEEEEEECSCGGGTSCSSEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEEC T ss_pred CCHHHHHHHHHHHHH-H--CCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEE T ss_conf 688899999999986-4--8755688865534543065100378999899989987663799999873447987999813 Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 8888889999999579955863688740044899999999999847 Q gi|254781160|r 197 EGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 (245) Q Consensus 197 EGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~~~g 242 (245) =-+-.. ++..+.- -..+|+|+..|-|-+++--.++..-.+|| T Consensus 209 fa~Gd~---~~~~~yv-de~ISISdYpLSa~~v~sri~~~~E~~wg 250 (258) T 2v3j_A 209 MARGKD---NFADEYV-DEKVGLSNYPLSASVACSKFCHGAEDAWN 250 (258) T ss_dssp SSSCCT---TTTTTTC-SCEEBSCSSCCCHHHHHHHHHHHHHHHTT T ss_pred ECCCCC---CCCCHHC-EEEEEEECCCHHHHHHHHHHHHHHHHHHC T ss_conf 548985---5120005-05899728854199999999999999848 No 16 >1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Probab=75.02 E-value=4.3 Score=19.82 Aligned_cols=114 Identities=15% Similarity=0.117 Sum_probs=59.1 Q ss_pred CCEE-EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC Q ss_conf 3135-413445411567775444456656555542022011221223357889999751234434332000000112333 Q gi|254781160|r 81 DVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW 159 (245) Q Consensus 81 ~i~l-~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~ 159 (245) ++.| +-.+-.+..+-.+++-|.-.|++.++. +.... -|...+..++. ..-.++|.+... ..++++.. T Consensus 116 ~~~lvLd~i~dP~NlGaiiRta~afg~~~ii~--~~~~~-------~~~~~~~r~s~-ga~~~~~~~~~~--~~~~~~~~ 183 (274) T 1ipa_A 116 ALILVAVGLEKPGNLGAVLRSADAAGAEAVLV--AGGVD-------LYSPQVIRNST-GVVFSLRTLAAS--ESEVLDWI 183 (274) T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCSEEEE--ESCCC-------TTCHHHHHHTT-TGGGTSCEEEEC--HHHHHHHH T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE--CCCCC-------CCCCCEECCCC-CEEEEEEEEEEC--HHHHHHHH T ss_conf 78999968978627999999999749877884--48723-------34640000354-316899888611--37788876 Q ss_pred CCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHH Q ss_conf 223332126300012110222100367883599988888-888899999995 Q gi|254781160|r 160 DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHS 210 (245) Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~ 210 (245) ......++........ . .......+++++++|+|| |.|++..+.... T Consensus 184 ~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~ 231 (274) T 1ipa_A 184 KQHNLPLVATTPHAEA-L---YWEANLRPPVAIAVGPEHEGLRAAWLEAAQT 231 (274) T ss_dssp HHTTCCEEEECTTCSS-B---GGGSCCCSSEEEEECCTTSCCCHHHHHHCSE T ss_pred HHCCEEECCCCCCCCC-C---CEECCCCCCEEEEECCCCCCCCHHHHHHCCE T ss_conf 5123000012333343-1---1001467773999916767889999974897 No 17 >1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Probab=74.95 E-value=1.6 Score=22.69 Aligned_cols=136 Identities=13% Similarity=0.173 Sum_probs=68.5 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 13541344541156777544445665655554202201122122335788999975123443433200000011233322 Q gi|254781160|r 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH 161 (245) Q Consensus 82 i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~ 161 (245) +-++-.+-.+..+-.+++-|.-+|++.++.. .++. +-+...+..++..+.. ++|.. ...+++++++.... T Consensus 107 ~vvLd~i~dp~NlGaiiRta~afG~~~vil~--~~~~------~~~~~~~~r~s~G~~~-~~~~~-~~~~l~~~l~~l~~ 176 (253) T 1gz0_A 107 LLILDGVTDPHNLGACLRSADAAGVHAVIVP--KDRS------AQLNATAKKVACGAAE-SVPLI-RVTNLARTMRMLQE 176 (253) T ss_dssp EEEEESCCCHHHHHHHHHHHHHHTCSEEEEE--SSSS------CCCCHHHHHHHTTHHH-HSCEE-EESCHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEC--CCCC------CCCCCHHHHHHCCCHH-CCCCC-CCCCHHHHHHHHHH T ss_conf 9999557885079999999997299868304--6766------7652422343258611-28950-16999999998643 Q ss_pred CCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEECCCCC--CCHHHHHHHHH Q ss_conf 3332126300012110222100367883599988888-8888999999957995586368874--00448999999 Q gi|254781160|r 162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFVTPLSLGPRI--LRSDTAAVAAM 234 (245) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~~vsLG~~I--LR~ETA~i~al 234 (245) ....++..+..... .+......+++.+++|.|+ |.|++..+.... .-.+-+-+.+ |=.-+|+-.++ T Consensus 177 ~~~~~~~~~~~~~~----~~~~~~~~~~~~lv~GnE~~Gls~~~l~~~d~---~v~IP~~g~~~SLNva~A~aI~l 245 (253) T 1gz0_A 177 ENIWIVGTAGEADH----TLYQSKMTGRLALVMGAEGEGMRRLTREHCDE---LISIPMAGSVSSLNVSVATGICL 245 (253) T ss_dssp TTCEEEEECTTCSE----EGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSE---EEECCCSSSSCCCCHHHHHHHHH T ss_pred CCCCCCCCCCCCCC----CHHHHCCCCCEEEEECCCCCCCCHHHHHHCCE---EEEECCCCCCCCHHHHHHHHHHH T ss_conf 01222122323455----31121047976999878777889999985998---99978989995061999999999 No 18 >1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.10 c.116.1.2 Probab=73.67 E-value=4.7 Score=19.57 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=35.4 Q ss_pred CCCCCCCEEEEEC-CCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHH Q ss_conf 0367883599988-888888899999995799558636887400448999999999998 Q gi|254781160|r 183 AIAHIPNVAILIG-PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 (245) Q Consensus 183 ~~~~~~~i~i~IG-PEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~~ 240 (245) .....+.++++.| |.+|.-+-.-+. --+++ | +-|.+..|+|-|.+.+||+++++ T Consensus 206 ~~~~~~~~lvvFGgp~~Gl~e~~~D~--~lNt~-P-~QGsrtIRtEEAv~itLa~ln~~ 260 (268) T 1k3r_A 206 RMRGAREAAILFGGPYKGLPEIDADI--WVNTL-P-GQCTETVRTEEAVLATLSVFNML 260 (268) T ss_dssp HHTTCSEEEEECCCSSSCCCSCCCSE--EEBSS-T-TCSSSCCCHHHHHHHHHHHHHHH T ss_pred CCCCCCEEEEEECCCCCCCHHHHCCE--EEECC-C-CCCCCCCHHHHHHHHHHHHHHHH T ss_conf 45678708999899655764341785--89838-9-98887661899999999999818 No 19 >1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Probab=69.60 E-value=2.7 Score=21.15 Aligned_cols=140 Identities=9% Similarity=-0.001 Sum_probs=69.7 Q ss_pred CCCCEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 4431354-134454115677754444566565555420220112212233578899997512344343320000001123 Q gi|254781160|r 79 QSDVQYI-FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLK 157 (245) Q Consensus 79 ~~~i~l~-~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~ 157 (245) ++++.++ -.+-.+..+-.+++-|.-+|++.++.+...-... +..+ .+-.....++|-.. ..++.++++ T Consensus 23 ~~~l~vvLd~i~~p~NiGaI~Rta~afG~~~v~l~~~~~~~~-----~~~~-----~~s~gs~~~~~~~~-~~~~~~~l~ 91 (211) T 1zjr_A 23 QKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKKA-----KINE-----GITQGSHKWVFIEK-VDNPVQKLL 91 (211) T ss_dssp EEEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTCC-----CCCH-----HHHTTGGGSSEEEE-CSCHHHHHH T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC-----HHHH-----HHHCCCCCEEEEEE-ECCHHHHHH T ss_conf 999899995898843799999999985898899948988862-----7788-----88524410357999-678899987 Q ss_pred CCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHH Q ss_conf 3322333212630001211022210036788359998888-888889999999579955863688--7400448999999 Q gi|254781160|r 158 NWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKETLHSLPFVTPLSLGP--RILRSDTAAVAAM 234 (245) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~l~~~~~~~~vsLG~--~ILR~ETA~i~al 234 (245) ........++.-+...... .+......+++.+++|+| -|.|++..+..... -.+-+-+ .-|=.-+|+-.++ T Consensus 92 ~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~lvfG~E~~GLs~e~l~~~d~~---v~IPm~g~~~SLNvs~A~aI~l 165 (211) T 1zjr_A 92 EFKNRGFQIVATWLSKESV---NFREVDYTKPTVLVVGNELQGVSPEIVEIADKK---IVIPMYGMAQSLNVSVATGIIL 165 (211) T ss_dssp HHHHTTCEEEEEBCSTTSE---EGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEE---EECCCCSSCSSCCHHHHHHHHH T ss_pred HHHHCCCEEEEEECCCCCC---CCCCCCCCCEEEEEECCCCCCCCHHHHHHCCEE---EEECCCCCCCEEEHHHHHHHHH T ss_conf 6540484488740333332---221245663069997676678999999857989---9977999997004999999999 Q ss_pred H Q ss_conf 9 Q gi|254781160|r 235 A 235 (245) Q Consensus 235 s 235 (245) - T Consensus 166 y 166 (211) T 1zjr_A 166 Y 166 (211) T ss_dssp H T ss_pred H T ss_conf 9 No 20 >3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Probab=69.22 E-value=3.7 Score=20.29 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=58.6 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 13541344541156777544445665655554202201122122335788999975123443433200000011233322 Q gi|254781160|r 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH 161 (245) Q Consensus 82 i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~ 161 (245) +-++-.+-.+..+--|++-|.-+|++.++.... ++. +-|...+..|+.-+ -.++|... .++.++++.... T Consensus 121 ilvLD~IqDPgNlGaIiRta~afG~~~vil~~~-~~~------~~~~~kv~RaS~Ga-~~~~p~~~--~~~~~~~~~l~~ 190 (277) T 3nk6_A 121 VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDS-DLA------TIADRRLLRASRGY-VFSLPVVL--ADREEAVSFLRD 190 (277) T ss_dssp EEEEESCCCHHHHHHHHHHHHHTTCSEEEEESC-CCS------CTTCHHHHHHTTTC-TTTSCEEE--CCHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEECCC-CCC------CCCCCCCCCCCCCC-EEECCEEE--CCCCHHHHHHHH T ss_conf 999947887745899999999708857996257-855------23473124325663-34212022--032034677763 Q ss_pred CCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHH Q ss_conf 3332126300012110222100367883599988888-8888999999 Q gi|254781160|r 162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETL 208 (245) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l 208 (245) ....++..+..+... ... .....+++.+++|.|| |.|++..+.. T Consensus 191 ~~~~i~~~~~~~~~~-~~~--~~~~~~~~~lv~G~E~~Gls~~~~~~~ 235 (277) T 3nk6_A 191 NDIALMVLDTDGDLG-VKD--LGDRADRMALVFGSEKGGPSGLFQEAS 235 (277) T ss_dssp TTCCEEEECTTCSEE-GGG--GGGCCSCCEEEEEBTTTBSCHHHHHHC T ss_pred CCCEEEEEEECCCCC-EEC--CCCCCCCEEEEECCCCCCCCHHHHHHC T ss_conf 586179998437644-000--114788889998776678889999738 No 21 >2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, knot, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.85A {Porphyromonas gingivalis W83} Probab=58.79 E-value=7.6 Score=18.22 Aligned_cols=114 Identities=10% Similarity=0.049 Sum_probs=56.6 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 13541344541156777544445665655554202201122122335788999975123443433200000011233322 Q gi|254781160|r 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH 161 (245) Q Consensus 82 i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~ 161 (245) +-++-.+-.+..+-.|++-|.-.|++.++.. +.+. +-|...++.|+.-+ -.++|.+. ..++.++++.... T Consensus 105 ~lvLd~i~dPgNlGaIiRta~afG~~~vil~--~~~~------d~~~~k~~ras~Ga-~~~v~~~~-~~~~~~~l~~l~~ 174 (257) T 2i6d_A 105 TLLLDGVQDPGNVGTILRTADWFGIRHVWLG--TGSA------DVFSPKVVQASMGA-LARVQPTP-LKNTVDTLAYFRR 174 (257) T ss_dssp EEEEESCCCHHHHHHHHHHHHHHTCCEEEEC--TTCC------CTTSHHHHHTSTTG-GGTCEEEE-CSCHHHHHHHHHH T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEC--CCCC------CCCCHHHHHHCCCC-CEECCCCC-CCHHHHHHHHHHH T ss_conf 9999579884579999999998098602000--1455------65776663211575-01102233-3125678999853 Q ss_pred CCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHH Q ss_conf 3332126300012110222100367883599988888-888899999 Q gi|254781160|r 162 NCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKET 207 (245) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~ 207 (245) ....++..... ... ........-.+++.+++|.|| |.|++-.+. T Consensus 175 ~~~~i~~~~~~-~~~-~~~~~~~~~~~~~~lv~GnE~~Gls~~~~~~ 219 (257) T 2i6d_A 175 QGIPVYGAFLD-GQS-LYEAPLPNFTEPAILVLGSEGRGISPEVAAE 219 (257) T ss_dssp TTCCEEEEEEE-EEE-TTTSCCCCTTSCEEEEEEBTTTBSCHHHHTT T ss_pred CCCEEEEECCC-CCC-CCCCCCCCCCCCEEEEECCCCCCCCHHHHHH T ss_conf 68359983024-553-1000012678865999878767889999984 No 22 >1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Probab=58.33 E-value=7.2 Score=18.38 Aligned_cols=115 Identities=10% Similarity=0.161 Sum_probs=55.7 Q ss_pred CCEE-EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---C Q ss_conf 3135-41344541156777544445665655554202201122122335788999975123443433200000011---2 Q gi|254781160|r 81 DVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFL---L 156 (245) Q Consensus 81 ~i~l-~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~---l 156 (245) .+.+ +-.+-.+..+-.|++-|.-.|++.++. +..+. +-|...++.|+.-+ -.++|.+. ..++.++ + T Consensus 126 ~~~lvLd~i~dPgNlGaIiRta~afG~~~vil--~~~~~------~~~~~~~~ras~Ga-~~~~~~~~-~~~~~~~~~~l 195 (287) T 1x7o_A 126 FLGVLFDRPTSPGNIGSIIRSADALGAHGLIV--AGHAA------DVYDPKSVRSSTGS-LFSLPAVR-VPSPGEVMDWV 195 (287) T ss_dssp CEEEEEESCSCHHHHHHHHHHHHHTTCCEEEE--ESSSS------CTTSHHHHHHTTTG-GGTSCEEE-ESSHHHHHHHH T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEE--EEECC------CCCCCCCCEECCCH-HHHCCEEE-EEHHHHHHHHH T ss_conf 77999966877655899999888559876999--73034------44443000001021-32110489-81046777765 Q ss_pred CCCC--CCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHH Q ss_conf 3332--23332126300012110222100367883599988888-88889999999 Q gi|254781160|r 157 KNWD--HNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLH 209 (245) Q Consensus 157 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~ 209 (245) +... .....++..+.... ..+.+....+++.+++|.|| |.|++..+... T Consensus 196 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d 247 (287) T 1x7o_A 196 EARRAAGTPIVLVGTDEHGD----CDVFDFDFTQPTLLLIGNETAGLSNAWRTLCD 247 (287) T ss_dssp HHHHHHTCCCEEEEECTTCS----EEGGGSCTTSCEEEEECBTTTBSCHHHHHHCS T ss_pred HHHHCCCCCEEEECCCCCCC----CCCHHHCCCCCEEEEECCCCCCCCHHHHHHCC T ss_conf 55540487568741200024----32111203686299988888788999998589 No 23 >3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides} Probab=54.25 E-value=4.8 Score=19.55 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=62.8 Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 13541344541156777544445665655554202201122122335788999975123443433200000011233322 Q gi|254781160|r 82 VQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDH 161 (245) Q Consensus 82 i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~ 161 (245) +-++.-+-.+...-.+++-+--.|++.++.+...-.. +..-+..++.-+ ...++......++..++..... T Consensus 6 ~iVLv~p~~p~NiGai~R~~~~fG~~~l~lv~p~~~~--------~~~~~~~~a~ga-~~~~~~~~~~~~~~~~~~~~~~ 76 (249) T 3onp_A 6 VFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGW--------PNPKAVAMASGA-GRLLDHAGLFPTVAEAIRDCDY 76 (249) T ss_dssp EEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCS--------SCHHHHHHHGGG-HHHHHTCEEESSHHHHHTTCSE T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCC--------CCHHHHHHHCCC-HHEECEEEEECCHHHHHHHHCC T ss_conf 8999389998749999999998289989991898899--------988999884787-3220211364459999763000 Q ss_pred C----------CCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEECCC--CCCCHHH Q ss_conf 3----------332126300012110222100367883599988888-88889999999579955863688--7400448 Q gi|254781160|r 162 N----------CQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFVTPLSLGP--RILRSDT 228 (245) Q Consensus 162 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~~vsLG~--~ILR~ET 228 (245) . ........ .............+++.++.|+|+ |.|++|++..... ..+-..+ ..|=..+ T Consensus 77 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~kvalVFG~E~~GLs~e~l~~cd~~---v~IP~~~~~~SLNls~ 149 (249) T 3onp_A 77 VFATTARGRELTKPVMTPE----RAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAI---VTVPVNPEFFSLNLAQ 149 (249) T ss_dssp EEEEESSCCCSSSCEECHH----HHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEE---EECCCCTTCCCCCHHH T ss_pred HHHHHHHHCCCCCCCCHHH----HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCCEE---EEECCCCCCCCEEHHH T ss_conf 1322223135786410011----34677787650477659999478778887887402518---9834899988615999 Q ss_pred HHHHHHH Q ss_conf 9999999 Q gi|254781160|r 229 AAVAAMA 235 (245) Q Consensus 229 A~i~als 235 (245) |+..++- T Consensus 150 AvaIvly 156 (249) T 3onp_A 150 CVLLLAY 156 (249) T ss_dssp HHHHHHH T ss_pred HHHHHHH T ss_conf 9999999 No 24 >3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} Probab=51.37 E-value=5.9 Score=18.96 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=51.2 Q ss_pred CCEEEECCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC Q ss_conf 3135413445-41156777544445665655554202201-122122335788999975123443433200000011233 Q gi|254781160|r 81 DVQYIFSPIK-TNRLDYMIQKSVEMGMGAIRPVITRYTQN-THYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKN 158 (245) Q Consensus 81 ~i~l~~~~~k-~~~~~~ilqk~tELGV~~I~p~~~~rs~~-~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~ 158 (245) -+++++--|+ +..+-.+++-+.-+|++.++. ..++.. ...+..+ -..+..+...+......+..+.. T Consensus 5 ~~~ivL~~p~~P~NiGaI~Rta~afGi~~viv--~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 73 (160) T 3e5y_A 5 MFNVVLVEPEIPPNTGNVIRLCANTGARLHLI--EPLGFPLDDAKMRR---------AGLDYHEYAQMRVHRDWDAFVAA 73 (160) T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHTCEEEEE--SSCSSCCCHHHHHH---------TTCCHHHHHTCEEESSHHHHHHH T ss_pred CEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE--CCCCCCHHHHHHHH---------HHCCCEEEEEEEEECCHHHHHHH T ss_conf 57999948999983999999999849957852--69986402689998---------74162587645663218889988 Q ss_pred CCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCC-CCCCHHHHHH Q ss_conf 322333212630001211022210036788359998888-8888899999 Q gi|254781160|r 159 WDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE-GGYHSEEKET 207 (245) Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPE-GGfs~~E~~~ 207 (245) ........+...... ..........+++++++|.| .|.|++..+. T Consensus 74 ~~~~~~~~~~~~~~~----~~~~~~~~~~~k~~lv~G~E~~Gls~~~l~~ 119 (160) T 3e5y_A 74 EAPDPARMFAFTTRG----SGRFHDRAFEPGDWFVFGAETRGLAPALVDR 119 (160) T ss_dssp HCCCGGGEEEECSTT----CEEGGGSCCCTTCEEEEEBTTTBSCHHHHTT T ss_pred HHCCCCEEEEEEECC----CCCCCCCCCCCCEEEEEECCCCCCCHHHHHH T ss_conf 750583699973012----3322112456523999804778899899986 No 25 >1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ... Probab=50.34 E-value=10 Score=17.35 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=35.3 Q ss_pred EEEECHHH-HHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCC-CCCEEEEE Q ss_conf 89987798-7599870357898889999779987987530235-55238997 Q gi|254781160|r 21 QGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVE 70 (245) Q Consensus 21 ~i~L~~~~-~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~-k~~~~~i~ 70 (245) ...|+.+. ..|=++-++++.||.|.|.-|+..--.++|..+. ++..+.++ T Consensus 25 ~a~LskeLr~k~g~R~~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~rV~Ve 76 (120) T 1vq8_T 25 RATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 76 (120) T ss_dssp EEEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEET T ss_pred ECCCCHHHHHHHCCCCCCEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEE T ss_conf 5727988999839853315079999995667699753299998679999994 No 26 >2wwb_L 60S ribosomal protein L26-A; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_L 2ww9_L 1s1i_U Probab=45.90 E-value=15 Score=16.37 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=36.3 Q ss_pred CEEEECHHH-HHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCC-CCCEEEEEE Q ss_conf 889987798-7599870357898889999779987987530235-552389975 Q gi|254781160|r 20 TQGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVEY 71 (245) Q Consensus 20 ~~i~L~~~~-~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~-k~~~~~i~~ 71 (245) -...|+.+. ..|=++.|+++.||.|.|.-|+..--.++|..+. ++..+.++. T Consensus 31 m~a~Lskelr~k~~~rs~~IrkGD~V~Vi~G~~KGk~GkV~~V~~~~~kV~VEg 84 (127) T 2wwb_L 31 LSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDK 84 (127) T ss_dssp TEEECCSHHHHHHSCSEEECCTTSEEEECSSSSTTCEEEEEEEETTTTEEEESS T ss_pred EECCCCHHHHHHHCCCCCEEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEEC T ss_conf 547379999998388411060799999977434894136999987799999918 No 27 >1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3 Probab=45.28 E-value=15 Score=16.31 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=35.1 Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 883599988888888899999995799558636887400448999999999 Q gi|254781160|r 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 (245) Q Consensus 187 ~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~ 237 (245) .+++.++||+--||+++= .+.+. ..+|||+-++=-+-|.++++=++ T Consensus 95 g~~i~fiIGGa~G~~~~~---~~~a~--~~lSls~mT~pH~larv~l~EQl 140 (155) T 1ns5_A 95 GRDVSLLIGGPEGLSPAC---KAAAE--QSWSLSALTLPHPLVRVLVAESL 140 (155) T ss_dssp CSCEEEEECBTTBCCHHH---HHHCS--EEECCCSSCCCHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCCHHH---HHHHC--CEEECCCCCCCHHHHHHHHHHHH T ss_conf 998799996787558899---98519--58867799985899999999999 No 28 >3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI0380; APC63004, methylase family protein, haemophilus influenzae RD KW20; 2.01A {Haemophilus influenzae} Probab=45.16 E-value=12 Score=16.87 Aligned_cols=144 Identities=11% Similarity=0.038 Sum_probs=66.5 Q ss_pred CEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 1354-134454115677754444566565555420220112212233578899997512344343320000001123332 Q gi|254781160|r 82 VQYI-FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD 160 (245) Q Consensus 82 i~l~-~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~ 160 (245) |.++ ..+-.+..+-.+++-+.-.|++.++.+-. ++ ...+ +...+ -.+...++......++++++.... T Consensus 8 i~iVL~~p~~p~NiGai~Rs~~~fG~~~L~lV~p-~~----~~~~-----a~~~a-~ga~~~l~~~~~~~~~~~~~~~~~ 76 (244) T 3ilk_A 8 IRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSP-KS----VDEQ-----SYALS-AGAENIVKNARVVDSFDEAVDDCS 76 (244) T ss_dssp EEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESC-SC----CSHH-----HHHTT-TTCHHHHHHCEEESSHHHHTTTCS T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC-CC----CCHH-----HHHHH-CCCCCCCCCEEEEECHHHHHHHHH T ss_conf 8999948988676999999999809997999389-99----8979-----99974-754112375799840666666677 Q ss_pred CCCCCC--CCCCHHCCCCCHHH-HHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHH Q ss_conf 233321--26300012110222-100367883599988888-88889999999579955863688740044899999999 Q gi|254781160|r 161 HNCQIV--FADETCGSENSLEK-LHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMAL 236 (245) Q Consensus 161 ~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~ 236 (245) ...... ............+. .......+++.++.|+|+ |.|.++++.....-.+ |.+=+-+-|=..+|+..++-- T Consensus 77 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ialvfG~E~~GLs~~~l~~~d~~v~I-P~~~~~~SLNls~AvaIvlYE 155 (244) T 3ilk_A 77 LVIGTSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNI-PANPDYSSLNLAMAVQLVSYE 155 (244) T ss_dssp EEEEECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECC-CCCTTSCCCCHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHCCCEEEEE-CCCCCCCCEEHHHHHHHHHHH T ss_conf 8889987642256443687874223203688648861666689976876155606985-589998323289999999999 Q ss_pred H Q ss_conf 9 Q gi|254781160|r 237 V 237 (245) Q Consensus 237 ~ 237 (245) + T Consensus 156 l 156 (244) T 3ilk_A 156 L 156 (244) T ss_dssp H T ss_pred H T ss_conf 9 No 29 >3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.30A {Bordetella pertussis} Probab=45.10 E-value=15 Score=16.29 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=23.7 Q ss_pred CCEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 3135413-4454115677754444566565555 Q gi|254781160|r 81 DVQYIFS-PIKTNRLDYMIQKSVEMGMGAIRPV 112 (245) Q Consensus 81 ~i~l~~~-~~k~~~~~~ilqk~tELGV~~I~p~ 112 (245) ++.+++- +-.+..+-.|++-|.-+|++.++.. T Consensus 10 ~i~vVL~~~~~P~NlGaIiRsa~afG~~~v~l~ 42 (173) T 3kty_A 10 RVRFIMTQPSHPGNVGSAARAIKTMGFGELVLV 42 (173) T ss_dssp TEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEE T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEE T ss_conf 659999279898749999999998299889998 No 30 >3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Probab=42.96 E-value=4.5 Score=19.69 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=37.3 Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCCCC----CCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 5789888999977998798753023555-23899754135555----44313541344541156777544445665655 Q gi|254781160|r 37 RMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTK----QSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR 110 (245) Q Consensus 37 Rlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~~~----~~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~ 110 (245) .+++||.|.+-||. ...++.+++++ +.+++..--.-... -|...+-++.+-....+.+++.+.++|++-+. T Consensus 151 ~vk~Gd~I~idDG~---i~l~V~~~~~~~v~~~v~~~G~l~~~Kgvn~p~~~~~~~~ltekD~~~~i~~a~~~~vd~ia 226 (511) T 3gg8_A 151 SVKPGNTILIADGS---LSVKVVEVGSDYVITQAQNTATIGERKNMNLPNVKVQLPVIGEKDKHDILNFGIPMGCNFIA 226 (511) T ss_dssp HCCTTCEEEETTTT---EEEEEEEECSSEEEEEESSCEEECSSCBEECTTCCCCSCSSCHHHHHHHHHTTTTTTCCEEE T ss_pred CCCCCCEEEECCCC---EEEEEEEEECCCEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 35789889981895---58999984021000100245445775121268752356665556378999999871999999 No 31 >3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} Probab=40.34 E-value=18 Score=15.82 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=31.4 Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHHHHHHCCCC Q ss_conf 788359998888888889999999579955863688--740044899999999999847869 Q gi|254781160|r 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGP--RILRSDTAAVAAMALVQAICGDWY 245 (245) Q Consensus 186 ~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~--~ILR~ETA~i~als~~~~~~g~~~ 245 (245) ..+.+.++.|-.-|.+.+|++.+... +.++--.+ +.|=...|+-.. +.-++|+|| T Consensus 132 ~~~~valvFGE~~GLtneeL~~cd~i--L~~Ip~~~~y~sLNvs~AvaIi---ldrl~g~~~ 188 (192) T 3dcm_X 132 TEKPVLILLGTGWGLPDEILEISDYV--LEPIRAQSDFNHLSVRAAAAII---IDRLIGENY 188 (192) T ss_dssp CCSCEEEEECCTTCCCHHHHTTCSEE--BCCTTTTSSCCCCCHHHHHHHH---HHHHTTTCC T ss_pred CCCCEEEEECCCCCCCHHHHHHCCEE--EEECCCCCCCCCCCHHHHHHHH---HHHHHCCCC T ss_conf 38818999347779999999853977--8635799999830799999999---999858301 No 32 >1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 3cw1_B Probab=40.00 E-value=18 Score=15.78 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=41.5 Q ss_pred HHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCHHHHH Q ss_conf 987035789888999977998798753023555238997541355554431354134454115677 Q gi|254781160|r 32 LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYM 97 (245) Q Consensus 32 l~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~~~~~~~~~~i~l~~~~~k~~~~~~i 97 (245) |++.|+--.|..|.|---+|..|.+++.+++....+.+..-..........++-...+++....++ T Consensus 3 LV~fL~kl~g~~VtVELKnG~~~~G~L~~vD~~MNl~L~nv~~t~~~g~~~~l~~v~IRG~nIRyI 68 (119) T 1b34_A 3 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYF 68 (119) T ss_dssp HHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEE T ss_pred HHHHHHHCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEEEEEECCCCCEEECCCEEECCCEEEEE T ss_conf 689998669986999988996999999998598869998999998999787758699889879999 No 33 >2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=39.88 E-value=12 Score=17.00 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=32.8 Q ss_pred EECHHH-HHHHHHHCCCCCCCEEEEEECCCCEEE-EEEECCC-CCCEEEEEEE Q ss_conf 987798-759987035789888999977998798-7530235-5523899754 Q gi|254781160|r 23 KASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWL-SKISYVG-KSIRFKVEYQ 72 (245) Q Consensus 23 ~L~~~~-~hHl~kVlRlk~Gd~i~i~dg~g~~~~-~~I~~~~-k~~~~~i~~~ 72 (245) .|+.+. ..|=++-++++.||+|.|.-|.-.--. +.|+.++ ++..+.++.. T Consensus 33 ~LSkeLr~ky~vRs~pVrkgD~V~V~RG~fkG~e~GKV~~V~~k~~~I~VEgv 85 (145) T 2zkr_t 33 PLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERV 85 (145) T ss_dssp -CCHHHHHC-CC-CCBCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETTC T ss_pred CCCHHHHHHCCCCCEEECCCCEEEEEECCCCCCCCCEEEEEEECCCEEEECCE T ss_conf 06987898839751201369999997279788768679999807519997566 No 34 >2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=38.44 E-value=16 Score=16.06 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=23.8 Q ss_pred CCCCCEEEEEECCCCEEEEEEECCCCC Q ss_conf 789888999977998798753023555 Q gi|254781160|r 38 MKEGDNILLFNGKDGEWLSKISYVGKS 64 (245) Q Consensus 38 lk~Gd~i~i~dg~g~~~~~~I~~~~k~ 64 (245) ..+||.|.++.|+-.-..++|..++.+ T Consensus 8 F~~GD~VeV~~GEl~~l~G~V~~v~~d 34 (59) T 2e6z_A 8 FQPGDNVEVCEGELINLQGKILSVDGN 34 (59) T ss_dssp CCTTSEEEECSSTTTTCEEEECCCBTT T ss_pred CCCCCEEEEECCEECCCEEEEEEECCC T ss_conf 499998999226763779999997299 No 35 >2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=36.81 E-value=20 Score=15.46 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=27.5 Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEE Q ss_conf 5789888999977998798753023555-238997 Q gi|254781160|r 37 RMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVE 70 (245) Q Consensus 37 Rlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~ 70 (245) |..+||.|...-.+|..|.++|.++++. ..+.+. T Consensus 9 ~f~~G~~VLarW~Dg~fYlg~I~~V~~~~~~c~V~ 43 (68) T 2e5p_A 9 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQ 43 (68) T ss_dssp CCCTTCEEEEECTTSSEEEEEEEEEETTTTEEEEE T ss_pred CCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEE T ss_conf 63358789988406858555799982589889999 No 36 >3khd_A Pyruvate kinase; malaria, structural genomics, structural genomics consortium, SGC; 2.70A {Plasmodium falciparum 3D7} Probab=36.54 E-value=10 Score=17.32 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=36.6 Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEECCCCCCCCCEE-----EECCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 5789888999977998798753023555-23899754135555443135-----41344541156777544445665655 Q gi|254781160|r 37 RMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQSRSQTKQSDVQY-----IFSPIKTNRLDYMIQKSVEMGMGAIR 110 (245) Q Consensus 37 Rlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~~~~~~~~~i~l-----~~~~~k~~~~~~ilqk~tELGV~~I~ 110 (245) .+++||.|.+-||. ...+|.+++.+ +.+++..--.- .....+++ -++.+-....+.+++-+.++||+-|. T Consensus 160 ~vk~Gd~I~idDG~---i~l~V~~~~~~~i~~~V~~gG~L-~s~Kgvn~p~~~~~~~~ltekd~~~~~~~a~~~~vD~ia 235 (520) T 3khd_A 160 SVKPGNIILIADGS---VSCKVLETHEDHVITEVLNSAVI-GERKNMNLPNVKVDLPIISEKDKNDILNFAIPMGCNFIA 235 (520) T ss_dssp HCCC-CEEEETTTT---EEEEEEEECSSCEEEEECC-CCC-CSSCEEECTTSCCCSCSSCHHHHHHHHHTHHHHTCCEEE T ss_pred CCCCCCEEEEECCC---CEEEEEECCCCEEEEEEEECCEE-CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE T ss_conf 37999889984786---26999970588069999328684-688558505765577766500399999999874998675 No 37 >3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} PDB: 3n4k_A* 1mxi_A* 1j85_A* Probab=35.75 E-value=21 Score=15.38 Aligned_cols=30 Identities=7% Similarity=0.020 Sum_probs=21.7 Q ss_pred CCEEEECCCC-CCHHHHHHHHHHHHHHHHHH Q ss_conf 3135413445-41156777544445665655 Q gi|254781160|r 81 DVQYIFSPIK-TNRLDYMIQKSVEMGMGAIR 110 (245) Q Consensus 81 ~i~l~~~~~k-~~~~~~ilqk~tELGV~~I~ 110 (245) .+++++.-|+ +..+-.+++-+--+|++.++ T Consensus 4 ~l~ivL~~p~~P~NlGaI~Rta~afGv~~vi 34 (165) T 3n4j_A 4 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHL 34 (165) T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCEEEE T ss_pred CEEEEEECCCCCCCHHHHHHHHHHCCCCEEE T ss_conf 3699996899998199999999976997894 No 38 >2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Probab=35.31 E-value=21 Score=15.31 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=28.2 Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEE Q ss_conf 357898889999779987987530235552389975 Q gi|254781160|r 36 LRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEY 71 (245) Q Consensus 36 lRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~ 71 (245) -..++||.+...-.+|..|.|+|..+..+..+.+.. T Consensus 8 ~~~~vGd~v~ArwsD~~~Y~a~I~~~~~~~~y~V~f 43 (74) T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQF 43 (74) T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEE T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEE T ss_conf 667879999999799949989999987899799999 No 39 >1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1 Probab=34.80 E-value=22 Score=15.26 Aligned_cols=37 Identities=8% Similarity=-0.036 Sum_probs=22.8 Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 788359998888888889999999579955863688740 Q gi|254781160|r 186 HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 (245) Q Consensus 186 ~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~IL 224 (245) ...+-+++|.+|+|+|..=...++..|. ....+.+|| T Consensus 34 L~~sP~~lv~~e~~~s~~Merimk~~~~--~~~~~kkiL 70 (126) T 1sf8_A 34 LTDTPAIVSTDADEMSTQMAKLFAAAGQ--KVPEVKYIF 70 (126) T ss_dssp CSSCCEEEECCTTSCCHHHHHHHHTTTS--CCCCCCCEE T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCC--CCCCCCCEE T ss_conf 5777434551776557999999987222--456556645 No 40 >3cw1_D Small nuclear ribonucleoprotein SM D3; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} Probab=34.31 E-value=22 Score=15.21 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=30.0 Q ss_pred HHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEE Q ss_conf 87035789888999977998798753023555238997 Q gi|254781160|r 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVE 70 (245) Q Consensus 33 ~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~ 70 (245) .++|+--.|..|.|---+|..|.+++..++....+.+. T Consensus 7 l~lL~~~~g~~V~VeLKng~~~~G~L~~~D~~MN~~L~ 44 (126) T 3cw1_D 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMS 44 (126) T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEEEECCCEEEEEE T ss_conf 99999717998999989984999999977285489997 No 41 >2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A* Probab=31.46 E-value=25 Score=14.91 Aligned_cols=36 Identities=6% Similarity=0.235 Sum_probs=27.2 Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEE Q ss_conf 578988899997799879875302355523899754 Q gi|254781160|r 37 RMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 (245) Q Consensus 37 Rlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~ 72 (245) -+++|+.|....-+|..|.|+|+.++.+..+.+... T Consensus 5 ~l~vG~~V~a~~~~g~~y~g~I~~v~~~~~y~V~fd 40 (118) T 2qqr_A 5 SITAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFD 40 (118) T ss_dssp CCCTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEET T ss_pred CCCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEC T ss_conf 167899999996799888889999857888999985 No 42 >2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} Probab=30.18 E-value=26 Score=14.77 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=28.3 Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEE Q ss_conf 35789888999977998798753023555-2389975 Q gi|254781160|r 36 LRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEY 71 (245) Q Consensus 36 lRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~ 71 (245) .+.++||.|.+---+|..|.++|..+++. ..+-+.. T Consensus 12 ~~f~~GedVLarwtDg~fYlgtI~~V~~~~~~clV~F 48 (66) T 2eqj_A 12 CKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIF 48 (66) T ss_dssp CCSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEE T ss_pred HHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEE T ss_conf 1015798899993168687767899834797799999 No 43 >2qiw_A PEP phosphonomutase; NP_600288.1, structural genomics, joint center for structural genomics, JCSG; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} Probab=29.55 E-value=26 Score=14.70 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=24.1 Q ss_pred CEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCH Q ss_conf 35999888888888999999957995586368874004 Q gi|254781160|r 189 NVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRS 226 (245) Q Consensus 189 ~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ 226 (245) .+.++.+|-|+.-.--.+.|.+.|+ ..|+.||..+|+ T Consensus 206 Pv~~~~~~~~~~~~~~~~~l~~lG~-~~v~~gp~~~~~ 242 (255) T 2qiw_A 206 PVNITAHPVDGHGAGDLATLAGLGV-RRVTFGPLWQKW 242 (255) T ss_dssp CBEEECBTTTBBTTBCHHHHHHTTC-CEEECTTHHHHH T ss_pred CEEEEEECCCCCCCCCHHHHHHCCC-CEEEECCHHHHH T ss_conf 8689983478899998999997599-599988499999 No 44 >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Probab=29.14 E-value=27 Score=14.66 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=57.2 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHH Q ss_conf 35788999975123443433200000011233322333212630001211022210036788359998888888889999 Q gi|254781160|r 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 (245) Q Consensus 127 ~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~ 206 (245) +..-+.++|.+.+-.++|-+..|......++.=-... .+|.-+..++...++.+.. ..+.+-++ |-||.+.+... T Consensus 107 ~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~v-K~FPA~~~Gg~~~lkal~~--p~p~i~~~--ptGGI~~~n~~ 181 (225) T 1mxs_A 107 ITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRRF-KLFPAEISGGVAAIKAFGG--PFGDIRFC--PTGGVNPANVR 181 (225) T ss_dssp CCHHHHHHHHHCSSCEECEECSHHHHHHHHTTTCCEE-EETTHHHHTHHHHHHHHHT--TTTTCEEE--EBSSCCTTTHH T ss_pred CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE-EECCCCCCCCHHHHHHHCC--CCCCCCEE--EECCCCHHHHH T ss_conf 9599999998659972578699899999998699818-7764010279999986406--56677166--30798988999 Q ss_pred HHHHCCCCEEEECCCCCCCHH Q ss_conf 999579955863688740044 Q gi|254781160|r 207 TLHSLPFVTPLSLGPRILRSD 227 (245) Q Consensus 207 ~l~~~~~~~~vsLG~~ILR~E 227 (245) .+-+.+.+..+ .|..++..+ T Consensus 182 ~yl~~~~v~~v-ggs~l~~~~ 201 (225) T 1mxs_A 182 NYMALPNVMCV-GTTWMLDSS 201 (225) T ss_dssp HHHHSTTBCCE-EECTTSCHH T ss_pred HHHHCCCCEEE-ECCCCCCHH T ss_conf 99957891999-864447987 No 45 >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} Probab=28.35 E-value=18 Score=15.77 Aligned_cols=119 Identities=8% Similarity=0.067 Sum_probs=56.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CCC Q ss_conf 115677754444566565555420220112212233578899997512344343320000001123332--------233 Q gi|254781160|r 92 NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--------HNC 163 (245) Q Consensus 92 ~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~--------~~~ 163 (245) +.|..-++.+.++|++.|++-.-. .....+.++.++.+..| . -..+.++.-|+...+... ... T Consensus 111 ~~M~~dI~~~k~~Ga~GvVfG~L~--~dg~ID~~~~~~Lv~~a-~------~l~vTFHRAfD~~~d~~~ale~Li~lG~~ 181 (287) T 3iwp_A 111 EVMKADIRLAKLYGADGLVFGALT--EDGHIDKELCMSLMAIC-R------PLPVTFHRAFDMVHDPMAALETLLTLGFE 181 (287) T ss_dssp HHHHHHHHHHHHTTCSEEEECCBC--TTSCBCHHHHHHHHHHH-T------TSCEEECGGGGGCSCHHHHHHHHHHHTCS T ss_pred HHHHHHHHHHHHCCCCEEEEEEEC--CCCCCCHHHHHHHHHHH-C------CCCEEEEEHHHHCCCHHHHHHHHHHCCCC T ss_conf 999999999998699978995568--99984999999999982-8------98569740056408999999999973988 Q ss_pred CCCCCCCHHCCCCCHHHHHCCC--CCCCEEEEECCCCCCCHHHHHHH-HHCCCCEEEECCCC Q ss_conf 3212630001211022210036--78835999888888888999999-95799558636887 Q gi|254781160|r 164 QIVFADETCGSENSLEKLHAIA--HIPNVAILIGPEGGYHSEEKETL-HSLPFVTPLSLGPR 222 (245) Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~i~IGPEGGfs~~E~~~l-~~~~~~~~vsLG~~ 222 (245) .++-.--.......++.+.... ....+.|+.| ||.+.+-+..+ +..|+ ..++++.+ T Consensus 182 rILTSGg~~~A~~G~~~L~~Lv~~a~~~I~Im~G--GGV~~~Ni~~l~~~~G~-~eiH~Sa~ 240 (287) T 3iwp_A 182 RVLTSGCDSSALEGLPLIKRLIEQAKGRIVVMPG--GGITDRNLQRILEGSGA-TEFHCSAR 240 (287) T ss_dssp EEEECTTSSSTTTTHHHHHHHHHHHTTSSEEEEC--TTCCTTTHHHHHHHHCC-SEEEECCE T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEC--CCCCHHHHHHHHHHCCC-CEEEECCC T ss_conf 5676888566888689999999973899469856--98898999999997199-18976888 No 46 >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Probab=28.30 E-value=22 Score=15.22 Aligned_cols=97 Identities=15% Similarity=0.253 Sum_probs=59.2 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH Q ss_conf 78899997512344343320000001123332233321263000121102221003678835999888888888999999 Q gi|254781160|r 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208 (245) Q Consensus 129 ~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l 208 (245) .-+.+.|.+.+-.++|-+..|......++.=-+.. .+|.-+.. +...++.+.. ..+.+-++ |-||.+.+....+ T Consensus 94 ~~v~~~~~~~~~~~iPGv~TptEi~~A~~~G~~~v-K~FPa~~~-G~~~lk~l~~--p~p~i~~i--ptGGV~~~n~~~~ 167 (205) T 1wa3_A 94 EEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTIL-KLFPGEVV-GPQFVKAMKG--PFPNVKFV--PTGGVNLDNVCEW 167 (205) T ss_dssp HHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEE-EETTHHHH-HHHHHHHHHT--TCTTCEEE--EBSSCCTTTHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEE-EECCHHHC-CHHHHHHHHC--CCCCCCEE--EECCCCHHHHHHH T ss_conf 99999999839982277487158999997699979-74512104-7889999866--58998488--6469988999999 Q ss_pred HHCCCCEEEECCCCCCCHHHHHHH Q ss_conf 957995586368874004489999 Q gi|254781160|r 209 HSLPFVTPLSLGPRILRSDTAAVA 232 (245) Q Consensus 209 ~~~~~~~~vsLG~~ILR~ETA~i~ 232 (245) -++|. ..|.+|..+.+.+...+. T Consensus 168 l~aGa-~avg~Gs~l~~~~~~~i~ 190 (205) T 1wa3_A 168 FKAGV-LAVGVGSALVKGTPDEVR 190 (205) T ss_dssp HHHTC-SCEEECHHHHCSCHHHHH T ss_pred HHCCC-EEEEECHHHCCCCHHHHH T ss_conf 98899-299983671589999999 No 47 >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 1ojx_A 1ok4_A 1ok6_A Probab=27.93 E-value=28 Score=14.52 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=72.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----C Q ss_conf 567775444456656555542022011221223357889999751234434332000000112333223332126----3 Q gi|254781160|r 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA----D 169 (245) Q Consensus 94 ~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~----~ 169 (245) .-+-++.+.+||++.+-....-.+......+ .-+-+..++|.+.-+|.+-.+.....-..+..+.+.+.++ . T Consensus 94 ~~~~ve~a~~lGAdaV~~~v~~g~~~e~~~l----~~~a~v~~e~~~~glP~~~e~~p~g~~~~~~~~~e~v~~aaRia~ 169 (263) T 1w8s_A 94 ANCSVEEAVSLGASAVGYTIYPGSGFEWKMF----EELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIAL 169 (263) T ss_dssp ESSCHHHHHHTTCSEEEEEECTTSTTHHHHH----HHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHH T ss_pred HHCCHHHHHHCCCCEEEEEEECCCCHHHHHH----HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH T ss_conf 0147999972754768999716996479999----999999999998099379876644886446677789999999999 Q ss_pred CH---------HCCCCCHHHHHCCCCCCCEEEEECCCCCCCH---HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH Q ss_conf 00---------0121102221003678835999888888888---99999995799558636887400448999999999 Q gi|254781160|r 170 ET---------CGSENSLEKLHAIAHIPNVAILIGPEGGYHS---EEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 (245) Q Consensus 170 ~~---------~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~---~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~ 237 (245) +- ..+.......-.....-.+.+.-||-++-.. +.....-..| +..+..|.+|.-.+.. ...+..+ T Consensus 170 ELGADiiK~~~~g~~~~~~~~v~~a~~~PVli~GG~~~~~~~~~l~~v~~a~~~G-a~G~~~GRnv~q~~~p-~~~~~al 247 (263) T 1w8s_A 170 ELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAG-ALGIAVGRNVWQRRDA-LKFARAL 247 (263) T ss_dssp HHTCSEEEEECCSSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTT-CCEEEESHHHHTSTTH-HHHHHHH T ss_pred HHCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC-CEEEEECCHHHCCCCH-HHHHHHH T ss_conf 8399846533799879888888714677668963898899999999999999879-9699845311168789-9999999 Q ss_pred HH Q ss_conf 99 Q gi|254781160|r 238 QA 239 (245) Q Consensus 238 ~~ 239 (245) +. T Consensus 248 ~~ 249 (263) T 1w8s_A 248 AE 249 (263) T ss_dssp HH T ss_pred HH T ss_conf 99 No 48 >1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Probab=26.83 E-value=29 Score=14.40 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=22.3 Q ss_pred HCCCCCCCEEEEEEC--CCCEEEEEEECCCC Q ss_conf 035789888999977--99879875302355 Q gi|254781160|r 35 VLRMKEGDNILLFNG--KDGEWLSKISYVGK 63 (245) Q Consensus 35 VlRlk~Gd~i~i~dg--~g~~~~~~I~~~~k 63 (245) -|.++.||.|.|.+. ++++|.+++...++ T Consensus 26 eLs~~~GD~i~vl~~~~~~gWw~g~~~~~g~ 56 (70) T 1gcq_C 26 FLRLNPGDIVELTKAEAEHNWWEGRNTATNE 56 (70) T ss_dssp BCCBCTTCEEEEEECCTTCSEEEEEETTTTE T ss_pred EEEECCCCEEEEEEECCCCCEEEEEECCCCC T ss_conf 6308699999995514889989999888997 No 49 >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Probab=26.74 E-value=25 Score=14.91 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=57.2 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHH Q ss_conf 78899997512344343320000001123332233321263000121102221003678835999888888888999999 Q gi|254781160|r 129 TYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETL 208 (245) Q Consensus 129 ~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l 208 (245) .-+.++|++.+-+++|-+..|......++.--... .+|.-+..+. ..+..+...... . +-+=|-||.+.+-...+ T Consensus 91 ~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~v-K~FPa~~~G~-~~lk~l~~~~p~-~--i~~iptGGI~~~N~~~y 165 (212) T 2v82_A 91 SEVIRRAVGYGMTVCPGCATATEAFTALEAGAQAL-KIFPSSAFGP-QYIKALKAVLPS-D--IAVFAVGGVTPENLAQW 165 (212) T ss_dssp HHHHHHHHHTTCEEECEECSHHHHHHHHHTTCSEE-EETTHHHHCH-HHHHHHHTTSCT-T--CEEEEESSCCTTTHHHH T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEE-EECCCCCCCH-HHHHHHHCCCCC-C--CEEEEECCCCHHHHHHH T ss_conf 89999999758763388487699999998298858-6325343578-899875266877-8--77974279998999999 Q ss_pred HHCCCCEEEECCCCCCCH Q ss_conf 957995586368874004 Q gi|254781160|r 209 HSLPFVTPLSLGPRILRS 226 (245) Q Consensus 209 ~~~~~~~~vsLG~~ILR~ 226 (245) -++|. ..+.+|..+.+. T Consensus 166 l~aGa-~~v~iGs~l~~~ 182 (212) T 2v82_A 166 IDAGC-AGAGLGSDLYRA 182 (212) T ss_dssp HHHTC-SEEEECTTTCCT T ss_pred HHCCC-EEEEECHHHCCC T ss_conf 98599-699987897389 No 50 >1uf2_K Structural protein P7; virus components, icosahedral virus; 3.50A {Rice dwarf virus} Probab=24.71 E-value=25 Score=14.81 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=15.1 Q ss_pred EEEECCCCCCCHHHHHHHHHC Q ss_conf 999888888888999999957 Q gi|254781160|r 191 AILIGPEGGYHSEEKETLHSL 211 (245) Q Consensus 191 ~i~IGPEGGfs~~E~~~l~~~ 211 (245) -++|--++=||.+|...|.+. T Consensus 283 evFi~~~~vFs~~E~s~l~el 303 (506) T 1uf2_K 283 AVFINESEPFSDKERSELSEL 303 (506) T ss_pred CEEECCCCCCCHHHHHHHHHH T ss_conf 305504456563556667887 No 51 >1a53_A IGPS, indole-3-glycerolphosphate synthase; thermostable, TIM-barrel; HET: IGP; 2.00A {Sulfolobus solfataricus} SCOP: c.1.2.4 PDB: 1lbf_A* 1lbl_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 2c3z_A 3b5v_A Probab=24.53 E-value=31 Score=14.22 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=26.3 Q ss_pred CCCCC-CHHHHHHHHHCCCCEEEECCCCCCCHHH Q ss_conf 88888-8899999995799558636887400448 Q gi|254781160|r 196 PEGGY-HSEEKETLHSLPFVTPLSLGPRILRSDT 228 (245) Q Consensus 196 PEGGf-s~~E~~~l~~~~~~~~vsLG~~ILR~ET 228 (245) .|+|. +.+++..+.+.|+ ..+=.|..++|++- T Consensus 208 aESGI~t~ed~~~l~~~G~-davLIGeslm~~~d 240 (247) T 1a53_A 208 AESGISERNEIEELRKLGV-NAFLIGSSLMRNPE 240 (247) T ss_dssp EESCCCCHHHHHHHHHTTC-CEEEECHHHHHCTT T ss_pred EECCCCCHHHHHHHHHCCC-CEEEECHHHCCCCC T ss_conf 9647999999999997799-99998988758984 No 52 >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A Probab=24.27 E-value=17 Score=15.99 Aligned_cols=123 Identities=9% Similarity=0.092 Sum_probs=60.1 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--------CC Q ss_conf 4115677754444566565555420220112212233578899997512344343320000001123332--------23 Q gi|254781160|r 91 TNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWD--------HN 162 (245) Q Consensus 91 ~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~--------~~ 162 (245) -+.|..=++.+-++|++.|.+-.- +.....+.++.++.+..| . -..+.++.-|+...+... .. T Consensus 72 ~~~M~~dI~~~k~~G~dGvVfG~L--~~dg~iD~~~~~~Li~~a-~------~l~vTFHRAfD~~~d~~~al~~Li~lG~ 142 (256) T 1twd_A 72 FAAILEDVRTVRELGFPGLVTGVL--DVDGNVDMPRMEKIMAAA-G------PLAVTFHRAFDMCANPLYTLNNLAELGI 142 (256) T ss_dssp HHHHHHHHHHHHHTTCSEEEECCB--CTTSSBCHHHHHHHHHHH-T------TSEEEECGGGGGCSCHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHCCCCEEEEEEE--CCCCCCCHHHHHHHHHHH-C------CCCEEEECCHHHHCCHHHHHHHHHHCCC T ss_conf 999999999999859996788668--899984999999999985-7------6864774425652899999999997598 Q ss_pred CCCCCCCCHHCCCCCHHHHHCCC-CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCC Q ss_conf 33212630001211022210036-7883599988888888899999995799558636887400 Q gi|254781160|r 163 CQIVFADETCGSENSLEKLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILR 225 (245) Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR 225 (245) +.++-.-........++.+.... ......|+ |-||.+++-+..+.+.|+ ..++++.+..+ T Consensus 143 ~rILTSG~~~~a~~G~~~L~~L~~~a~~~iIm--~GgGI~~~Ni~~l~~tG~-~e~H~Sa~~~~ 203 (256) T 1twd_A 143 ARVLTSGQKSDALQGLSKIMELIAHRDAPIIM--AGAGVRAENLHHFLDAGV-LEVHSSAGAWQ 203 (256) T ss_dssp CEEEECTTSSSTTTTHHHHHHHHTSSSCCEEE--EESSCCTTTHHHHHHHTC-SEEEECCEEEE T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE--EECCCCHHHHHHHHHCCC-CEEEECCCCCC T ss_conf 97865789677777699999999856993899--727779999999997798-87987878656 No 53 >1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus erythematosus, SLE; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 Probab=23.67 E-value=34 Score=14.02 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=38.8 Q ss_pred HHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCHHH Q ss_conf 870357898889999779987987530235552389975413555544313541344541156 Q gi|254781160|r 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95 (245) Q Consensus 33 ~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~~~~~~~~~~i~l~~~~~k~~~~~ 95 (245) .+.|+--.|..|.+---+|..+.+.+..++....+.+..-...........+--..+|++... T Consensus 7 l~lL~~~~g~~V~VeLk~g~~~~G~L~~~D~~mNl~L~d~~~~~~~~~~~~~~~~~IRG~~I~ 69 (75) T 1d3b_A 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIR 69 (75) T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEE T ss_pred HHHHHHCCCCEEEEEECCCCEEEEEEEEECCCEEEEEEEEEEEECCCCEEECCEEEEECCEEE T ss_conf 999976689989999999829999999886873899989999908995417376999899999 No 54 >1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, histone acetyltranferase, structural genomics; NMR {Mus musculus} SCOP: b.34.13.3 Probab=23.18 E-value=34 Score=13.96 Aligned_cols=26 Identities=8% Similarity=-0.002 Sum_probs=22.3 Q ss_pred CCCCCCEEEEEECCCCEEEEEEECCC Q ss_conf 57898889999779987987530235 Q gi|254781160|r 37 RMKEGDNILLFNGKDGEWLSKISYVG 62 (245) Q Consensus 37 Rlk~Gd~i~i~dg~g~~~~~~I~~~~ 62 (245) -+.+|+.+.|....|..|.|+|..+. T Consensus 12 ~~~vG~~~~v~~~dg~~~~A~Vl~~r 37 (133) T 1wgs_A 12 TVEIGETYLCRRPDSTWHSAEVIQSR 37 (133) T ss_dssp CCCTTSEEEEEETTTEEEEEEEEEEE T ss_pred CCCCCCEEEEEECCCCEEEEEEEEEE T ss_conf 47029899999389988667999986 No 55 >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Probab=23.16 E-value=34 Score=13.96 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=19.0 Q ss_pred CCCCCCEEEEEECCCCEEEEEEEC Q ss_conf 578988899997799879875302 Q gi|254781160|r 37 RMKEGDNILLFNGKDGEWLSKISY 60 (245) Q Consensus 37 Rlk~Gd~i~i~dg~g~~~~~~I~~ 60 (245) ..+.||.|.++|++|..|...++. T Consensus 6 ~~~~Gd~V~l~~~~~~~~~~~l~~ 29 (280) T 1i9g_A 6 PFSIGERVQLTDAKGRRYTMSLTP 29 (280) T ss_dssp SCCTTCEEEEEETTCCEEEEECCT T ss_pred CCCCCCEEEEEECCCCEEEEEECC T ss_conf 999998899997899789999879 No 56 >2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A Probab=23.10 E-value=35 Score=13.95 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=23.3 Q ss_pred CCCCCCCEEEEEECCCCEEEEEEECCC Q ss_conf 357898889999779987987530235 Q gi|254781160|r 36 LRMKEGDNILLFNGKDGEWLSKISYVG 62 (245) Q Consensus 36 lRlk~Gd~i~i~dg~g~~~~~~I~~~~ 62 (245) ...++|+.+++.|-.|..+.|.|+.++ T Consensus 18 ~~F~vG~kLEa~D~~~~w~~a~v~~v~ 44 (88) T 2eqm_A 18 ITFEIGARLEALDYLQKWYPSRIEKID 44 (88) T ss_dssp CCCCSSCEEEEECTTSCEEEEEEEEEE T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEEE T ss_conf 634548899998389996999999996 No 57 >3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis} Probab=22.97 E-value=35 Score=13.93 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=19.9 Q ss_pred CCCCCCEEEECCCCCCCCEEEECHHH Q ss_conf 76778777408544788889987798 Q gi|254781160|r 3 IHSHLKRLFVDFPLCIKTQGKASGDQ 28 (245) Q Consensus 3 ~~~~m~R~f~~~~l~~~~~i~L~~~~ 28 (245) +-|++||+|++.....+..+.+..+. T Consensus 18 ~~mkiPrlYVEg~~~e~~~vvie~~g 43 (169) T 3d4r_A 18 QGMKIPKIYVEGELNDGDRVAIEKDG 43 (169) T ss_dssp TTCCCCEEEEETCCCSSCEEEEEGGG T ss_pred CCCCCCEEEEECCCCCCCEEEEEECC T ss_conf 33656459996122558689996089 No 58 >1xi6_A Extragenic suppressor; structural genomics, southeast collaboratory for structural genomics hyperthermophIle, PSI; 2.80A {Pyrococcus furiosus} SCOP: e.7.1.1 Probab=22.94 E-value=35 Score=13.93 Aligned_cols=10 Identities=0% Similarity=-0.074 Sum_probs=6.2 Q ss_pred HHHHHHHCCC Q ss_conf 7599870357 Q gi|254781160|r 29 YHYLAHVLRM 38 (245) Q Consensus 29 ~hHl~kVlRl 38 (245) -.++.+.|+- T Consensus 59 e~~i~~~L~~ 68 (262) T 1xi6_A 59 EDLILSRITE 68 (262) T ss_dssp HHHHHHHHGG T ss_pred HHHHHHHHHH T ss_conf 9999999986 No 59 >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* Probab=22.55 E-value=35 Score=13.88 Aligned_cols=29 Identities=7% Similarity=0.212 Sum_probs=17.5 Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 4313541344541156777544445665655 Q gi|254781160|r 80 SDVQYIFSPIKTNRLDYMIQKSVEMGMGAIR 110 (245) Q Consensus 80 ~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~ 110 (245) .+++|+=+.. .+.+|+=+...+||.+++. T Consensus 105 ~~v~LvEs~~--KK~~FL~~v~~~LgL~Nv~ 133 (249) T 3g89_A 105 LELVLVDATR--KKVAFVERAIEVLGLKGAR 133 (249) T ss_dssp CEEEEEESCH--HHHHHHHHHHHHHTCSSEE T ss_pred CEEEEECCCH--HHHHHHHHHHHHCCCCCCE T ss_conf 3299980827--8999999999982999845 No 60 >1w8g_A YGGS, hypothetical UPF0001 protein YGGS; structural genomics, hypothetical protein, putative enzyme with PLP-binding domain; HET: PLP ICT; 2.0A {Escherichia coli} Probab=22.45 E-value=36 Score=13.86 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=10.0 Q ss_pred EECCCCCCHHHHHHHHHHHHHHH Q ss_conf 41344541156777544445665 Q gi|254781160|r 85 IFSPIKTNRLDYMIQKSVEMGMG 107 (245) Q Consensus 85 ~~~~~k~~~~~~ilqk~tELGV~ 107 (245) +++..|....+. ++.+.++|+. T Consensus 31 LiaVsK~~~~e~-I~~a~~~G~r 52 (234) T 1w8g_A 31 LLAVSKTKPASA-IAEAIDAGQR 52 (234) T ss_dssp EEEECTTSCHHH-HHHHHHTTCC T ss_pred EEEEECCCCHHH-HHHHHHCCCC T ss_conf 999989989999-9999986997 No 61 >3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, ligase, metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A Probab=22.31 E-value=36 Score=13.85 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=23.2 Q ss_pred CCCCCEEEEEE-CCCCEEEEEEECCCCC Q ss_conf 78988899997-7998798753023555 Q gi|254781160|r 38 MKEGDNILLFN-GKDGEWLSKISYVGKS 64 (245) Q Consensus 38 lk~Gd~i~i~d-g~g~~~~~~I~~~~k~ 64 (245) .|.||.|.+.| .-|.++.|.|..+.++ T Consensus 11 YKvgd~VD~rD~~~GAWFEA~Iv~I~~k 38 (161) T 3db3_A 11 YKVNEYVDARDTNMGAWFEAQVVRVTRK 38 (161) T ss_dssp SCTTCEEEEECTTTCCEEEEEEEEEEEC T ss_pred EECCCEEEEEECCCCEEEEEEEEEEECC T ss_conf 8706578885467552589999999706 No 62 >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A Probab=22.30 E-value=36 Score=13.85 Aligned_cols=103 Identities=23% Similarity=0.280 Sum_probs=60.4 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHH Q ss_conf 35788999975123443433200000011233322333212630001211022210036788359998888888889999 Q gi|254781160|r 127 VRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKE 206 (245) Q Consensus 127 ~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~ 206 (245) +..-+.+.|.|.+-+++|=+..|......++.=-... .+|.-+..+....++.+.. ..+.+-++ |=||.+.+... T Consensus 92 ~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~v-K~FPA~~~Gg~~~lk~l~~--p~p~i~f~--ptGGV~~~n~~ 166 (207) T 2yw3_A 92 LLEEVAALAQARGVPYLPGVLTPTEVERALALGLSAL-KFFPAEPFQGVRVLRAYAE--VFPEVRFL--PTGGIKEEHLP 166 (207) T ss_dssp CCHHHHHHHHHHTCCEEEEECSHHHHHHHHHTTCCEE-EETTTTTTTHHHHHHHHHH--HCTTCEEE--EBSSCCGGGHH T ss_pred CCHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCEE-EECHHHHCCCHHHHHHHHC--CCCCCCEE--EECCCCHHHHH T ss_conf 8699999999629975178799999999997699979-8660331378999976534--89988089--73798999999 Q ss_pred HHHHCCCCEEEECCCCCCCHHHHHHHHHH Q ss_conf 99957995586368874004489999999 Q gi|254781160|r 207 TLHSLPFVTPLSLGPRILRSDTAAVAAMA 235 (245) Q Consensus 207 ~l~~~~~~~~vsLG~~ILR~ETA~i~als 235 (245) .+-+.+.+..|. |..+.+.+-..+...+ T Consensus 167 ~~la~~~v~avG-gs~l~~~d~~~i~~~~ 194 (207) T 2yw3_A 167 HYAALPNLLAVG-GSWLLQGNLEAVRAKV 194 (207) T ss_dssp HHHTCSSBSCEE-ESGGGSSCHHHHHHHH T ss_pred HHHCCCCEEEEE-CHHHCCCCHHHHHHHH T ss_conf 998059869998-0771388999999999 No 63 >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Probab=22.07 E-value=15 Score=16.32 Aligned_cols=47 Identities=30% Similarity=0.410 Sum_probs=29.6 Q ss_pred CCCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEE-EEECCC Q ss_conf 77877740854478888998779875998703578988899-997799 Q gi|254781160|r 5 SHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNIL-LFNGKD 51 (245) Q Consensus 5 ~~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~-i~dg~g 51 (245) |-|+|+|--......-.-.+..+....+...+++++|++|. +.-|.| T Consensus 1 ~d~~~~~~~~e~~~~~~~P~~~~~~~~l~~~l~l~pg~rVLDiGcG~G 48 (256) T 1nkv_A 1 MDIPRIFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSG 48 (256) T ss_dssp ---CCHHHHHTSSCSSSSSCCHHHHHHHHHHTCCCTTCEEEEETCTTC T ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCC T ss_conf 995213660232042348888999999999708999999999858888 No 64 >2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Probab=21.81 E-value=37 Score=13.78 Aligned_cols=25 Identities=44% Similarity=0.789 Sum_probs=20.1 Q ss_pred HHCCCCCCCEEEEEE--CCCCEEEEEE Q ss_conf 703578988899997--7998798753 Q gi|254781160|r 34 HVLRMKEGDNILLFN--GKDGEWLSKI 58 (245) Q Consensus 34 kVlRlk~Gd~i~i~d--g~g~~~~~~I 58 (245) .-|-++.||.|.|.+ +.+++|.|++ T Consensus 20 dELsf~kGDiI~Vl~~~~~~gWw~G~~ 46 (142) T 2kbt_A 20 SELSLKEGDIIKILNKKGQQGWWRGEI 46 (142) T ss_dssp SBCCCCTTCEEEEEECCCSSSEEEEEE T ss_pred CCCCCCCCCEEEEEEEECCCCEEEEEE T ss_conf 984787999999988408999689998 Done!