HHSEARCH alignment of GI: 254781160 and SCOP domain: d1v6za2

Alignment
>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=7.4e-44  Score=303.44  Aligned_cols=158  Identities=29%  Similarity=0.455  Sum_probs=133.9

Q ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             55443135413445411567775444456656555542022011---221223357889999751234434332000000
Q gi|254781160|r   77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE  153 (245)
Q Consensus        77 ~~~~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~---~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~  153 (245)
                      ..+.+|+|+++++|+++|||++||+|||||++|+|++++||+.+   .++++||++|+++|||||||+++|+|+.+.+|+
T Consensus         2 e~~~~i~L~~~l~K~~~~~~il~k~tELGV~~i~p~~sers~~k~~~~~k~~r~~~i~~~A~~Qs~r~~lP~i~~~~~l~   81 (162)
T d1v6za2           2 EVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLK   81 (162)
T ss_dssp             SCSSCEEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGG
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf             99961899993147408999999999528187999973463022202133237799999998851445787102565889


Q ss_pred             CCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf             11233322333212630001211022210036788359998888888889999999579955863688740044899999
Q gi|254781160|r  154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA  233 (245)
Q Consensus       154 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~a  233 (245)
                      ++++....   .+++.+.   .....  ......+++.++||||||||++|+++|+++|| .+++||++|||+|||+++|
T Consensus        82 ~~~~~~~~---~~~~~~~---~~~~~--~~~~~~~~i~i~IGPEGGfs~~Ei~~l~~~g~-~~v~LG~~ILR~ETA~i~a  152 (162)
T d1v6za2          82 AVPQVAQG---LVAHVGA---TARVR--EVLDPEKPLALAVGPEGGFAEEEVALLEARGF-TPVSLGRRILRAETAALAL  152 (162)
T ss_dssp             GCCCCSSE---EEECTTC---CCCHH--HHCCTTSCEEEEECCTTCCCHHHHHHHHHHTE-EEECCCSSCCCHHHHHHHH
T ss_pred             HHHHHCCH---HHCCCCC---CCCCH--HHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHH
T ss_conf             97552000---0012232---10000--10103676169982667878999999998798-8987799822788599999


Q ss_pred             HHHHHHHHCC
Q ss_conf             9999998478
Q gi|254781160|r  234 MALVQAICGD  243 (245)
Q Consensus       234 ls~~~~~~g~  243 (245)
                      +|++++.+|+
T Consensus       153 ls~~~~~~Gr  162 (162)
T d1v6za2         153 LALCTAGEGR  162 (162)
T ss_dssp             HHHHTGGGTC
T ss_pred             HHHHHHHHCC
T ss_conf             9999997583


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: YggJ C-terminal domain-like
domain: Hypothetical protein TTHA0657 (TT1575)
species: Thermus thermophilus [TaxId: 274]