HHSEARCH alignment of GI: 254781160 and SCOP domain: d2qwva1

Alignment

Probab=94.77  E-value=0.012  Score=34.84  Aligned_cols=85  Identities=16%  Similarity=0.225  Sum_probs=61.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHH
Q ss_conf             00000112333223332126300012110222100367883599988888888899999995799558636887400448
Q gi|254781160|r  149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT  228 (245)
Q Consensus       149 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ET  228 (245)
                      -.+|++.++.+.....+++.++...+.      .+.....+.+++.|=-=||+++|.+.++..|. ..+||||+.|=+..
T Consensus       113 ~~~~e~~l~e~~e~~~~~~Lde~G~~i------~~~~~~~~~~FILsDh~~~~~~e~~~L~~~g~-~~iSLGp~~L~ash  185 (201)
T d2qwva1         113 TISFEALLGELAEHHSLYMMDKKGDSI------RDIKIGPNPCFILTDHIPMPKKSGNSMKRLGV-EKISLGPKMLFASQ  185 (201)
T ss_dssp             CCCHHHHHHHHHTTSEEEEEEEEEEET------TTSCCCSSEEEEECC----------CTTTTTC-EEEECCSSCCCHHH
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCCCH------HHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-EEEEECCHHHHHHH
T ss_conf             889999999985489689988999966------33668899879970899989789998875287-04765607887758


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999999999998
Q gi|254781160|r  229 AAVAAMALVQAI  240 (245)
Q Consensus       229 A~i~als~~~~~  240 (245)
                      +.+.+.-.+-..
T Consensus       186 cI~ivH~~LDr~  197 (201)
T d2qwva1         186 CVTLIHNEIDHQ  197 (201)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999986200

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: AF1056-like
domain: Uncharacterized protein VCA1059
species: Vibrio cholerae [TaxId: 666]