Query gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 245
No_of_seqs 113 out of 2755
Neff 7.5
Searched_HMMs 13730
Date Wed Jun 1 11:41:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781160.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nxza2 c.116.1.5 (A:74-247) H 100.0 0 0 325.4 12.0 163 77-244 2-170 (174)
2 d1vhka2 c.116.1.5 (A:74-253) H 100.0 1.4E-45 0 315.9 10.3 166 78-244 4-179 (180)
3 d1v6za2 c.116.1.5 (A:67-228) H 100.0 7.4E-44 0 303.4 10.0 158 77-243 2-162 (162)
4 d1nxza1 b.122.1.2 (A:2-73) Hyp 99.6 2.3E-15 1.7E-19 117.8 7.9 67 6-72 1-68 (72)
5 d1vhka1 b.122.1.2 (A:2-73) Hyp 99.4 2.5E-13 1.8E-17 104.5 6.9 66 8-73 1-70 (72)
6 d1v6za1 b.122.1.2 (A:4-66) Hyp 96.5 0.0035 2.5E-07 38.4 6.6 52 20-72 8-59 (63)
7 d2qwva1 c.116.1.7 (A:5-205) Un 94.8 0.012 9E-07 34.8 3.6 85 149-240 113-197 (201)
8 d2qmma1 c.116.1.7 (A:95-288) U 94.4 0.057 4.2E-06 30.5 6.3 82 149-237 108-189 (194)
9 d1gz0a1 c.116.1.1 (A:78-243) R 88.7 0.12 8.4E-06 28.5 2.5 116 81-210 18-135 (166)
10 d1v2xa_ c.116.1.1 (A:) tRNA (G 87.3 0.32 2.3E-05 25.7 4.0 140 78-235 19-162 (191)
11 d1vh0a_ c.116.1.3 (A:) Hypothe 86.6 0.64 4.7E-05 23.7 5.2 76 157-237 65-145 (157)
12 d1ipaa1 c.116.1.1 (A:106-263) 83.2 1.1 7.7E-05 22.3 5.1 113 81-209 11-125 (158)
13 d1k3ra2 c.116.1.2 (A:1-92,A:16 83.1 0.12 8.5E-06 28.5 0.1 54 183-241 135-190 (191)
14 d1to0a_ c.116.1.3 (A:) Hypothe 82.0 1.6 0.00011 21.1 6.2 77 156-237 64-145 (157)
15 d1o6da_ c.116.1.3 (A:) Hypothe 79.8 1.1 8.1E-05 22.1 4.2 76 157-237 58-137 (147)
16 d2v3ka1 c.116.1.6 (A:25-251) E 72.9 1.5 0.00011 21.2 3.4 79 160-242 148-226 (227)
17 d1b34a_ b.38.1.1 (A:) D1 core 61.5 4.8 0.00035 18.0 5.9 64 32-95 2-65 (80)
18 d1vqot1 b.34.5.1 (T:1-119) Rib 47.5 7 0.00051 16.9 3.0 50 21-70 24-75 (119)
19 d1ojxa_ c.1.10.1 (A:) Archaeal 46.5 7.1 0.00052 16.8 2.9 130 94-229 92-238 (251)
20 d1te7a_ b.122.1.7 (A:) Hypothe 41.5 6.3 0.00046 17.2 2.0 44 11-61 12-56 (103)
21 d2csua1 c.2.1.8 (A:1-129) Acet 36.6 8.8 0.00064 16.3 2.1 101 26-139 21-121 (129)
22 d1i4k1_ b.38.1.1 (1:) Archaeal 33.0 13 0.00098 15.1 4.8 63 33-95 5-67 (72)
23 d1d3ba_ b.38.1.1 (A:) D3 core 32.9 13 0.00098 15.1 5.2 63 33-95 4-66 (72)
24 d1ns5a_ c.116.1.3 (A:) Hypothe 31.7 14 0.001 14.9 5.8 46 187-237 95-140 (153)
25 d1h641_ b.38.1.1 (1:) Archaeal 30.7 15 0.0011 14.8 4.8 61 34-94 5-65 (71)
26 d1qf9a_ c.37.1.1 (A:) UMP/CMP 28.2 15 0.0011 14.8 2.1 12 79-90 5-16 (194)
27 d1sf8a_ d.271.1.1 (A:) Chapero 26.2 17 0.0013 14.3 4.0 36 187-224 24-59 (115)
28 d1a53a_ c.1.2.4 (A:) Indole-3- 25.6 17 0.0012 14.4 2.0 32 196-228 208-240 (247)
29 d1wa3a1 c.1.10.1 (A:2-203) KDP 23.3 18 0.0013 14.2 1.8 117 97-233 74-190 (202)
30 d1gsoa2 c.30.1.1 (A:-2-103) Gl 21.5 9.8 0.00071 16.0 0.1 29 191-222 69-97 (105)
31 d2zjrr1 b.34.5.1 (R:4-113) Rib 21.3 22 0.0016 13.7 2.0 38 33-70 8-46 (110)
32 d1gcqc_ b.34.2.1 (C:) Vav N-te 21.2 22 0.0016 13.7 3.9 30 34-63 25-56 (69)
33 d1i9ga_ c.66.1.13 (A:) Probabl 20.7 22 0.0016 13.6 3.7 23 38-60 4-26 (264)
No 1
>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=100.00 E-value=0 Score=325.43 Aligned_cols=163 Identities=27% Similarity=0.394 Sum_probs=141.1
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 55443135413445411567775444456656555542022011------221223357889999751234434332000
Q gi|254781160|r 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPT 150 (245)
Q Consensus 77 ~~~~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~------~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~ 150 (245)
+++.+|+|+|+++|+++|||+|||+|||||++|+|++++||+.+ .++++||++|+++|||||||+++|+|.++.
T Consensus 2 e~~~~i~l~~al~k~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~k~~r~~~i~~~A~eQsgr~~lP~i~~~~ 81 (174)
T d1nxza2 2 ESHLKIHLGQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQCGRNIVPEIRPLM 81 (174)
T ss_dssp CCSSCEEEEEECCSSSCHHHHHHHHHHTTCCEEEEEECTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHCCSSCCEECCCE
T ss_pred CCCCEEEEEEEECCCCHHHHHHHHHHHHCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 99963899995127625999999998008035896157645323106678860899999999998732733255314102
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHH
Q ss_conf 00011233322333212630001211022210036788359998888888889999999579955863688740044899
Q gi|254781160|r 151 TLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 (245)
Q Consensus 151 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~ 230 (245)
+|+++++..+....+.+++... .....+ .....++++++||||||||++|+++|+++|| .+++||+||||+|||+
T Consensus 82 ~l~~~l~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~i~iiIGPEGGfs~~E~~~~~~~g~-~~v~LG~~ILR~ETA~ 156 (174)
T d1nxza2 82 KLQDWCAENDGALKLNLHPRAH---YSIKTL-PTIPAGGVRLLIGSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETAS 156 (174)
T ss_dssp EHHHHHHCCSSCEEEEECTTCS---CBGGGC-CCCCTTCEEEEECCTTCCCHHHHHHHHHTTC-EEEBCCSSCCCHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHH---HHHHHH-CCCCCCCEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHH
T ss_conf 3778876401014443201234---455432-0278874799974776869899999997798-6866899812687699
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 99999999984786
Q gi|254781160|r 231 VAAMALVQAICGDW 244 (245)
Q Consensus 231 i~als~~~~~~g~~ 244 (245)
++|+|++++++|||
T Consensus 157 i~als~l~~~~gdl 170 (174)
T d1nxza2 157 LAAISALQICFGDL 170 (174)
T ss_dssp HHHHHHHHHHHSST
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999994653
No 2
>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}
Probab=100.00 E-value=1.4e-45 Score=315.85 Aligned_cols=166 Identities=24% Similarity=0.294 Sum_probs=141.9
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5443135413445411567775444456656555542022011------2212233578899997512344343320000
Q gi|254781160|r 78 KQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT------HYNMDRVRTYTISAAEQCDILTLPFIYPPTT 151 (245)
Q Consensus 78 ~~~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~------~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~ 151 (245)
.+.+|+|+++++|+++|||++||+|||||++|+|+.++||+.+ ..+++||++|+++|||||||+++|+|+.+.+
T Consensus 4 ~p~~i~L~~~l~K~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~~~~r~~~i~~eA~eQsgr~~lP~i~~~~~ 83 (180)
T d1vhka2 4 LPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHS 83 (180)
T ss_dssp CSSEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBC
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 88577999940376469999999983181558850035653223411456559999999999998643666543536788
Q ss_pred CCCCCCCCCCCCCCCCCCCHHCCCCCHH----HHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHH
Q ss_conf 0011233322333212630001211022----210036788359998888888889999999579955863688740044
Q gi|254781160|r 152 LEFLLKNWDHNCQIVFADETCGSENSLE----KLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSD 227 (245)
Q Consensus 152 l~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~E 227 (245)
|+++++..+..+.++++++......... ........+++.++||||||||++|+++|.++|| .+++||+||||+|
T Consensus 84 l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~g~-~~v~LG~~ILR~E 162 (180)
T d1vhka2 84 FQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSLLIVFGPEGGLTEAEVERLTEQDG-VTCGLGPRILRTE 162 (180)
T ss_dssp HHHHHHHGGGSSEEEEECC--------CHHHHHHHTCCTTCEEEEEECCTTCCCHHHHHHHHHTTC-EEECCCSSCCCTT
T ss_pred HHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCC-EEEECCCCCCHHH
T ss_conf 999997553444189870333444324678888750577870899966888989999999998899-8987899812677
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 89999999999984786
Q gi|254781160|r 228 TAAVAAMALVQAICGDW 244 (245)
Q Consensus 228 TA~i~als~~~~~~g~~ 244 (245)
||+++|+|+++|++..+
T Consensus 163 TA~i~als~l~~~~~l~ 179 (180)
T d1vhka2 163 TAPLYALSAISYQTELL 179 (180)
T ss_dssp THHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 49999999999998761
No 3
>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=7.4e-44 Score=303.44 Aligned_cols=158 Identities=29% Similarity=0.455 Sum_probs=133.9
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 55443135413445411567775444456656555542022011---221223357889999751234434332000000
Q gi|254781160|r 77 TKQSDVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNT---HYNMDRVRTYTISAAEQCDILTLPFIYPPTTLE 153 (245)
Q Consensus 77 ~~~~~i~l~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~---~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~ 153 (245)
..+.+|+|+++++|+++|||++||+|||||++|+|++++||+.+ .++++||++|+++|||||||+++|+|+.+.+|+
T Consensus 2 e~~~~i~L~~~l~K~~~~~~il~k~tELGV~~i~p~~sers~~k~~~~~k~~r~~~i~~~A~~Qs~r~~lP~i~~~~~l~ 81 (162)
T d1v6za2 2 EVGVEVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLK 81 (162)
T ss_dssp SCSSCEEEEEECCSTTHHHHHHHHHHHTTCSEEEEEECTTCSCSCCCHHHHHHHHHHHHHHHHHTTCSSCCEECCCEEGG
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 99961899993147408999999999528187999973463022202133237799999998851445787102565889
Q ss_pred CCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 11233322333212630001211022210036788359998888888889999999579955863688740044899999
Q gi|254781160|r 154 FLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 (245)
Q Consensus 154 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~a 233 (245)
++++.... .+++.+. ..... ......+++.++||||||||++|+++|+++|| .+++||++|||+|||+++|
T Consensus 82 ~~~~~~~~---~~~~~~~---~~~~~--~~~~~~~~i~i~IGPEGGfs~~Ei~~l~~~g~-~~v~LG~~ILR~ETA~i~a 152 (162)
T d1v6za2 82 AVPQVAQG---LVAHVGA---TARVR--EVLDPEKPLALAVGPEGGFAEEEVALLEARGF-TPVSLGRRILRAETAALAL 152 (162)
T ss_dssp GCCCCSSE---EEECTTC---CCCHH--HHCCTTSCEEEEECCTTCCCHHHHHHHHHHTE-EEECCCSSCCCHHHHHHHH
T ss_pred HHHHHCCH---HHCCCCC---CCCCH--HHHCCCCCCEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCHHHHHHHHH
T ss_conf 97552000---0012232---10000--10103676169982667878999999998798-8987799822788599999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999998478
Q gi|254781160|r 234 MALVQAICGD 243 (245)
Q Consensus 234 ls~~~~~~g~ 243 (245)
+|++++.+|+
T Consensus 153 ls~~~~~~Gr 162 (162)
T d1v6za2 153 LALCTAGEGR 162 (162)
T ss_dssp HHHHTGGGTC
T ss_pred HHHHHHHHCC
T ss_conf 9999997583
No 4
>d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=99.58 E-value=2.3e-15 Score=117.76 Aligned_cols=67 Identities=28% Similarity=0.412 Sum_probs=61.0
Q ss_pred CCCEEEECCCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEE
Q ss_conf 78777408544788889987798759987035789888999977998798753023555-23899754
Q gi|254781160|r 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQ 72 (245)
Q Consensus 6 ~m~R~f~~~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~ 72 (245)
|+||||++.++..++.+.|+++++|||.||||+++||.|.+|||+|++|.|+|++++|+ +.+.+...
T Consensus 1 ripR~f~~~~l~~~~~i~L~~~~~hHl~~VLR~k~Gd~v~l~dg~g~~~~~~I~~i~k~~~~~~i~~~ 68 (72)
T d1nxza1 1 RIPRIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGR 68 (72)
T ss_dssp CCCEEECSSCCTTCSEEECCHHHHHHHHTTSCCCTTCEEEEECSSSEEEEEEEEEEETTEEEEEECCC
T ss_pred CCCCEECCCCCCCCCEEECCHHHHHHHHHEECCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEEEE
T ss_conf 97528839636899999859899778986237789999999959999999999997499899999998
No 5
>d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}
Probab=99.40 E-value=2.5e-13 Score=104.51 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=57.5
Q ss_pred CEEEEC---CCCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCC-CEEEEEEEE
Q ss_conf 777408---544788889987798759987035789888999977998798753023555-238997541
Q gi|254781160|r 8 KRLFVD---FPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKS-IRFKVEYQS 73 (245)
Q Consensus 8 ~R~f~~---~~l~~~~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~-~~~~i~~~~ 73 (245)
+|||++ +++..+..+.|+++++||+.+|||+++||.|.+|||+|+.|.|+|+.++|+ +.+.+.+..
T Consensus 1 QR~Fi~~~~~~~~~~~~i~l~~~~~hHl~~VLR~k~Gd~i~l~dg~g~~~~~~I~~i~k~~v~~~i~e~~ 70 (72)
T d1vhka1 1 QRYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVIEWT 70 (72)
T ss_dssp CEEECSSCHHHHHSSSSEEEESHHHHHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEEEEC
T ss_pred CCEEECCCHHHCCCCCEEEECHHHHHHHHHEECCCCCCEEEEEECCCCEEEEEEEEEECCEEEEEEEEEE
T ss_conf 9598877543503699899888997777726456799999999897999999999997998999999980
No 6
>d1v6za1 b.122.1.2 (A:4-66) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=96.55 E-value=0.0035 Score=38.45 Aligned_cols=52 Identities=27% Similarity=0.455 Sum_probs=43.2
Q ss_pred CEEEECHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEE
Q ss_conf 88998779875998703578988899997799879875302355523899754
Q gi|254781160|r 20 TQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ 72 (245)
Q Consensus 20 ~~i~L~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~ 72 (245)
-+-.|.-.+.+||+.|||.+.||.+.+|||. .+..+++.+.+..+...+.++
T Consensus 8 ltgvlpl~e~rhlvevlra~vgdrftvfd~~-realaevvdlgpp~ryrilee 59 (63)
T d1v6za1 8 LTGVLPLRETRHLVEVLRARVGDRFTVFDGE-REALAEVVDLGPPLRYRVLEE 59 (63)
T ss_dssp GCSBCCHHHHHHHHTTSCCCTTCEEEEECSS-CEEEEEEEECCSSCEEEEEEE
T ss_pred CCEEEECHHCCHHHHHHHHCCCCCEEEECCH-HHHHHHHHHCCCCHHHHHHHH
T ss_conf 5344251210049999985247624772543-889999872287521033455
No 7
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]}
Probab=94.77 E-value=0.012 Score=34.84 Aligned_cols=85 Identities=16% Similarity=0.225 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHH
Q ss_conf 00000112333223332126300012110222100367883599988888888899999995799558636887400448
Q gi|254781160|r 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 (245)
Q Consensus 149 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ET 228 (245)
-.+|++.++.+.....+++.++...+. .+.....+.+++.|=-=||+++|.+.++..|. ..+||||+.|=+..
T Consensus 113 ~~~~e~~l~e~~e~~~~~~Lde~G~~i------~~~~~~~~~~FILsDh~~~~~~e~~~L~~~g~-~~iSLGp~~L~ash 185 (201)
T d2qwva1 113 TISFEALLGELAEHHSLYMMDKKGDSI------RDIKIGPNPCFILTDHIPMPKKSGNSMKRLGV-EKISLGPKMLFASQ 185 (201)
T ss_dssp CCCHHHHHHHHHTTSEEEEEEEEEEET------TTSCCCSSEEEEECC----------CTTTTTC-EEEECCSSCCCHHH
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCH------HHCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-EEEEECCHHHHHHH
T ss_conf 889999999985489689988999966------33668899879970899989789998875287-04765607887758
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999998
Q gi|254781160|r 229 AAVAAMALVQAI 240 (245)
Q Consensus 229 A~i~als~~~~~ 240 (245)
+.+.+.-.+-..
T Consensus 186 cI~ivH~~LDr~ 197 (201)
T d2qwva1 186 CVTLIHNEIDHQ 197 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999986200
No 8
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=94.38 E-value=0.057 Score=30.50 Aligned_cols=82 Identities=22% Similarity=0.283 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHH
Q ss_conf 00000112333223332126300012110222100367883599988888888899999995799558636887400448
Q gi|254781160|r 149 PTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDT 228 (245)
Q Consensus 149 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ET 228 (245)
-.+|++.++.+.....+++.++..... ......++.+++.|=-=||+++|.+.++..+. ..+||||..|=+..
T Consensus 108 ~~~~e~~l~e~~~~~~~~~Ld~~G~~i------~~~~~~~~~~FILsDh~~l~~~e~~~L~~~~~-~~iSLGp~~L~a~h 180 (194)
T d2qmma1 108 RKGLEELIEELSEKYSIIYLKEDGVDI------SNAQLPPNPLFVIGDHEGLTEEQEKVVERYAA-LKLSLSPLSLLAEQ 180 (194)
T ss_dssp CCCHHHHHHHHHHHSEEEEEEEEEEEG------GGSCCCSSEEEEEECTTCCCHHHHHHHHTTCS-EEEECCSSCCCHHH
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCC------CCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC-EEEECCCCCCCHHH
T ss_conf 888999999986469689988989862------22336999869975899988678887764277-14753654225346
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254781160|r 229 AAVAAMALV 237 (245)
Q Consensus 229 A~i~als~~ 237 (245)
+.+.+--.+
T Consensus 181 cI~ivh~~L 189 (194)
T d2qmma1 181 CVVIAHHHL 189 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 696999988
No 9
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=88.72 E-value=0.12 Score=28.52 Aligned_cols=116 Identities=13% Similarity=0.144 Sum_probs=62.3
Q ss_pred CCEE-EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3135-413445411567775444456656555542022011221223357889999751234434332000000112333
Q gi|254781160|r 81 DVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW 159 (245)
Q Consensus 81 ~i~l-~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~ 159 (245)
++.+ +-.+-.+..+-.|++-|.-+|++.++.... .+ +.+...+..++.-+. .++|... ..++.++++..
T Consensus 18 ~~~vvLd~i~~p~N~GaiiRta~afG~~~v~~~~~-~~-------~~~~~~~~r~s~g~~-~~v~~~~-~~~~~~~l~~~ 87 (166)
T d1gz0a1 18 PFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKD-RS-------AQLNATAKKVACGAA-ESVPLIR-VTNLARTMRML 87 (166)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESS-SS-------CCCCHHHHHHHTTHH-HHSCEEE-ESCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECC-CC-------CCCCHHHHEECCCCC-EEECEEE-CCCHHHHHHHH
T ss_conf 87999957888655999999998528864654025-43-------110012312313750-3765066-39999999870
Q ss_pred CCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHH
Q ss_conf 223332126300012110222100367883599988888-888899999995
Q gi|254781160|r 160 DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHS 210 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~ 210 (245)
......+........ ..+......+++.+++|+|+ |.|++..+....
T Consensus 88 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~ 135 (166)
T d1gz0a1 88 QEENIWIVGTAGEAD----HTLYQSKMTGRLALVMGAEGEGMRRLTREHCDE 135 (166)
T ss_dssp HHTTCEEEEECTTCS----EEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSE
T ss_pred CCCCCCCCCCCCCCC----CCHHHHHCCCCEEEEECCCCCCCCHHHHHHCCE
T ss_conf 124321112345444----547885146873899666767877999986898
No 10
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}
Probab=87.32 E-value=0.32 Score=25.67 Aligned_cols=140 Identities=13% Similarity=0.117 Sum_probs=70.9
Q ss_pred CCCCCEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 54431354-13445411567775444456656555542022011221223357889999751234434332000000112
Q gi|254781160|r 78 KQSDVQYI-FSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLL 156 (245)
Q Consensus 78 ~~~~i~l~-~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l 156 (245)
+.+++.++ -.+-.+..+-.|++-|.-.|++.++..-. .+.... +++ ++ .+....+.+....++.+++
T Consensus 19 ~~~~~~vvLd~i~~p~NiG~IiRta~afG~~~v~l~~~-~~~~~~-----~~~----~~--~~~~~~~~~~~~~~~~~~l 86 (191)
T d1v2xa_ 19 RQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNP-TGGVPT-----FNE----TS--GGSHKWVYLRVHPDLHEAF 86 (191)
T ss_dssp CBTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESG-GGGSCC-----CCS----SC--SSGGGTSEEEEESSHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC-CCCCCE-----EEE----CC--HHHHEEECCCCCCHHHHHH
T ss_conf 79997999957988754899999998512232012488-645301-----100----00--1120120122233025678
Q ss_pred CCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHH
Q ss_conf 333223332126300012110222100367883599988888-888899999995799558636887--40044899999
Q gi|254781160|r 157 KNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLHSLPFVTPLSLGPR--ILRSDTAAVAA 233 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~~~~~~~~vsLG~~--ILR~ETA~i~a 233 (245)
+........++.-+..... ..+......+++++++|.|+ |.|++..+..... -.+-+.+. -|=.-.|+-.+
T Consensus 87 ~~l~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~lV~G~E~~Gls~~~l~~~d~~---v~IPm~~~~~SLNvsvAa~I~ 160 (191)
T d1v2xa_ 87 RFLKERGFTVYATALREDA---RDFREVDYTKPTAVLFGAEKWGVSEEALALADGA---IKIPMLGMVQSLNVSVAAAVI 160 (191)
T ss_dssp HHHHHTTCEEEEECCCTTS---EEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEE---EECCCCSSCSCCCHHHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCC---CCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCE---EEECCCCCCCCCCHHHHHHHH
T ss_conf 8886368742111111223---3221124788808997366653659999837867---996899996633299999999
Q ss_pred HH
Q ss_conf 99
Q gi|254781160|r 234 MA 235 (245)
Q Consensus 234 ls 235 (245)
+-
T Consensus 161 ly 162 (191)
T d1v2xa_ 161 LF 162 (191)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 11
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=86.59 E-value=0.64 Score=23.66 Aligned_cols=76 Identities=14% Similarity=0.165 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCCCHHCCCCCHH---HHHC--CCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHH
Q ss_conf 33322333212630001211022---2100--367883599988888888899999995799558636887400448999
Q gi|254781160|r 157 KNWDHNCQIVFADETCGSENSLE---KLHA--IAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i 231 (245)
+..+..+.+++.|+.....++.+ .+.. ....+.+.++||+--||+++= +..+. ..+|||+-.+=-+-|.+
T Consensus 65 ~~i~~~~~~I~LDe~Gk~~sS~~fA~~i~~~~~~g~~~i~FiIGGa~G~~~~~---~~~a~--~~lSls~mT~pH~larv 139 (157)
T d1vh0a_ 65 AKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDV---LQRSN--YALSFSKMTFPHQMMRV 139 (157)
T ss_dssp HTSCTTSEEEEEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHH---HHHCS--EEECSCSSCCCHHHHHH
T ss_pred HHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH---HHHCC--CEEECCCCCCHHHHHHH
T ss_conf 73389982798742545678899999999998615785699976887668789---96339--77977337753599999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254781160|r 232 AAMALV 237 (245)
Q Consensus 232 ~als~~ 237 (245)
+++=++
T Consensus 140 ~l~EQl 145 (157)
T d1vh0a_ 140 VLIEQV 145 (157)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 12
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=83.17 E-value=1.1 Score=22.26 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=57.2
Q ss_pred CCEE-EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3135-413445411567775444456656555542022011221223357889999751234434332000000112333
Q gi|254781160|r 81 DVQY-IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNW 159 (245)
Q Consensus 81 ~i~l-~~~~~k~~~~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~ 159 (245)
++.+ +-.+-++..+-.+++-+.-+|++.++.. .... -+...+..++..+ -.++|.+. .+..++++..
T Consensus 11 ~~~lvld~i~dP~NlGai~Rta~~fG~~~v~~~--~~~~-------~~~~~~~r~s~g~-~~~~~~~~--~~~~~~~~~~ 78 (158)
T d1ipaa1 11 ALILVAVGLEKPGNLGAVLRSADAAGAEAVLVA--GGVD-------LYSPQVIRNSTGV-VFSLRTLA--ASESEVLDWI 78 (158)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEE--SCCC-------TTCHHHHHHTTTG-GGTSCEEE--ECHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHC--CCCC-------CCCHHHHEECCCC-EEEECCCC--CCHHHHHHHH
T ss_conf 889999689787538999999986024012220--5644-------3333462011240-22311001--1369999999
Q ss_pred CCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCC-CCCHHHHHHHH
Q ss_conf 223332126300012110222100367883599988888-88889999999
Q gi|254781160|r 160 DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG-GYHSEEKETLH 209 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~l~ 209 (245)
......++..+.... .. .......+++.+++|+|+ |.|+++.+...
T Consensus 79 ~~~~~~i~~~~~~~~-~~---~~~~~~~~~~~lvfG~E~~Gls~~~l~~~d 125 (158)
T d1ipaa1 79 KQHNLPLVATTPHAE-AL---YWEANLRPPVAIAVGPEHEGLRAAWLEAAQ 125 (158)
T ss_dssp HHTTCCEEEECTTCS-SB---GGGSCCCSSEEEEECCTTSCCCHHHHHHCS
T ss_pred HHHCCCCCCCCCCCC-CC---CHHCCCCCCEEEEECCCCCCCCHHHHHHCC
T ss_conf 862134322222222-21---000024766289974555666799998488
No 13
>d1k3ra2 c.116.1.2 (A:1-92,A:164-262) Hypothetical protein MTH1 (MT0001), dimerisation domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=83.11 E-value=0.12 Score=28.48 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=37.9
Q ss_pred CCCCCCCEEEEEC-CCCCCCHHHHHHHHH-CCCCEEEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0367883599988-888888899999995-7995586368874004489999999999984
Q gi|254781160|r 183 AIAHIPNVAILIG-PEGGYHSEEKETLHS-LPFVTPLSLGPRILRSDTAAVAAMALVQAIC 241 (245)
Q Consensus 183 ~~~~~~~i~i~IG-PEGGfs~~E~~~l~~-~~~~~~vsLG~~ILR~ETA~i~als~~~~~~ 241 (245)
.....+.++++.| |++|..+-. +.. -+++ | .-|.+..|||-|.+..||+++++.
T Consensus 135 ~~~~~~~~lvVFGgP~~Gl~~i~---~D~~vNt~-P-~QGsrtIRTEEAv~itLa~Ln~i~ 190 (191)
T d1k3ra2 135 RMRGAREAAILFGGPYKGLPEID---ADIWVNTL-P-GQCTETVRTEEAVLATLSVFNMLT 190 (191)
T ss_dssp HHTTCSEEEEECCCSSSCCCSCC---CSEEEBSS-T-TCSSSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEECCCCCCCHHHH---CCEEEECC-C-CCCCCCEEHHHHHHHHHHHHHCCC
T ss_conf 56678738999899656866664---78489758-9-988761008889999999864503
No 14
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=81.96 E-value=1.6 Score=21.12 Aligned_cols=77 Identities=12% Similarity=0.150 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCCCHHCCCCCHH---HHHCC--CCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHH
Q ss_conf 233322333212630001211022---21003--6788359998888888889999999579955863688740044899
Q gi|254781160|r 156 LKNWDHNCQIVFADETCGSENSLE---KLHAI--AHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAA 230 (245)
Q Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~ 230 (245)
++..+.++.+++.|+.....++.+ .+... ...+.+.++||.--||+++ .+..+. ..+|||+-.+=-+-|.
T Consensus 64 l~~i~~~~~~I~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~FiIGGa~G~~~~---~~~~a~--~~~Sls~mT~pH~l~r 138 (157)
T d1to0a_ 64 LSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDT---VMKRAD--EKLSFSKMTFPHQLMR 138 (157)
T ss_dssp HTTSCTTSEEEEEEEEEEECCHHHHHHHHHHHHTTTCCEEEEEECCSSCCCHH---HHHHCS--EEEESCSSCCCHHHHH
T ss_pred HHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH---HHHHCC--CEEECCCCCCHHHHHH
T ss_conf 86028998389861411455079999999998855886349997899888988---996269--5895346876589999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254781160|r 231 VAAMALV 237 (245)
Q Consensus 231 i~als~~ 237 (245)
++++=++
T Consensus 139 ~~l~EQi 145 (157)
T d1to0a_ 139 LILVEQI 145 (157)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 15
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=79.83 E-value=1.1 Score=22.12 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCCHHCCCCCHH---HHHCCC-CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 33322333212630001211022---210036-78835999888888888999999957995586368874004489999
Q gi|254781160|r 157 KNWDHNCQIVFADETCGSENSLE---KLHAIA-HIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVA 232 (245)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~ 232 (245)
+..+..+.+++.|+.....++.+ .+.... ..+++.++||+--||+++= +..+. ..+|||+-.+--+-|-++
T Consensus 58 ~~i~~~~~~I~LDe~Gk~~sS~~fA~~l~~~~~~g~~i~FiIGGa~Gl~~~~---~~~a~--~~lSls~mT~pH~l~rv~ 132 (147)
T d1o6da_ 58 NRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKDITILIGGPYGLNEEI---FAKAH--RVFSLSKMTFTHGMTVLI 132 (147)
T ss_dssp TTCCTTCEEEEEEEEEEECCHHHHHHHHHHHHHHTCCEEEEECCTTCCCGGG---GGGCS--EEEECCSSCCCHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH---HHHCC--CEEECCCCCCHHHHHHHH
T ss_conf 2479998799971466776889999999999844999789997888889899---97308--689577576647999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254781160|r 233 AMALV 237 (245)
Q Consensus 233 als~~ 237 (245)
.+=++
T Consensus 133 l~EQl 137 (147)
T d1o6da_ 133 VLEQI 137 (147)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 16
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=72.91 E-value=1.5 Score=21.18 Aligned_cols=79 Identities=8% Similarity=0.033 Sum_probs=42.3
Q ss_pred CCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 22333212630001211022210036788359998888888889999999579955863688740044899999999999
Q gi|254781160|r 160 DHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239 (245)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~~~ 239 (245)
+...+++.........+..+..........++++||-=-|-..+. ....- -..+|+|+..|-|-|++--.++..-.
T Consensus 148 p~~~k~I~LS~~G~~~~~~~l~~~l~~~~~v~~viG~f~~GD~~~---~~~yi-de~ISIsdypLSa~~v~sri~~~~E~ 223 (227)
T d2v3ka1 148 PTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNF---ADEYV-DEKVGLSNYPLSASVACSKFCHGAED 223 (227)
T ss_dssp CSSEEEEEECTTSCBCCHHHHHHTSCTTCEEEEEEECSSSSCSCT---TTTTC-SEEEBSCSSCCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCC---CCCCC-CEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 789859999998875689999997353899799995036888450---00005-26999717265199999999999999
Q ss_pred HHC
Q ss_conf 847
Q gi|254781160|r 240 ICG 242 (245)
Q Consensus 240 ~~g 242 (245)
+||
T Consensus 224 ~~~ 226 (227)
T d2v3ka1 224 AWN 226 (227)
T ss_dssp HTT
T ss_pred HHC
T ss_conf 868
No 17
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.49 E-value=4.8 Score=17.98 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=40.7
Q ss_pred HHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCHHH
Q ss_conf 9870357898889999779987987530235552389975413555544313541344541156
Q gi|254781160|r 32 LAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95 (245)
Q Consensus 32 l~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~~~~~~~~~~i~l~~~~~k~~~~~ 95 (245)
|+++|+--.|..|.+---+|..|.+++..++....+.+..-........+..+-...+|+....
T Consensus 2 lv~fL~~~~g~~V~VeLkng~~~~G~L~~~D~~MNl~L~~~~~~~~~~~~~~~~~v~IRG~~Ir 65 (80)
T d1b34a_ 2 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIR 65 (80)
T ss_dssp HHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEE
T ss_pred HHHHHHHCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCEEECCCEEECCCEEE
T ss_conf 7798887499889999989989999999983895899979999969997877562999587799
No 18
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=47.51 E-value=7 Score=16.89 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=34.7
Q ss_pred EEEECHHH-HHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCC-CCCEEEEE
Q ss_conf 89987798-7599870357898889999779987987530235-55238997
Q gi|254781160|r 21 QGKASGDQ-YHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVE 70 (245)
Q Consensus 21 ~i~L~~~~-~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~-k~~~~~i~ 70 (245)
...|+.+. -.|=++-|+++.||.|.|.-|+..--.++|..+. ++..+.++
T Consensus 24 ~a~LskeLr~k~~~r~~~IkkGD~V~Vi~Gk~KGk~GkV~~V~~k~~~V~Ve 75 (119)
T d1vqot1 24 RATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 75 (119)
T ss_dssp EEEECHHHHHHHTCSEEECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred ECCCCHHHHHHHCCCCCCEECCCEEEEEECCCCCCCCEEEEEECCCCEEEEE
T ss_conf 3706865698848743514279999992547899851499998779999996
No 19
>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}
Probab=46.49 E-value=7.1 Score=16.85 Aligned_cols=130 Identities=13% Similarity=0.120 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf 567775444456656555542022011221223357889999751234434332000000112333223332126-----
Q gi|254781160|r 94 LDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFA----- 168 (245)
Q Consensus 94 ~~~ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~----- 168 (245)
..+-++.+..||++.+-....-.+......++.+.++ .++|.+.-+|.+-.+.+...-.....+.+.+..+
T Consensus 92 ~~~sve~a~rlGadaV~~~v~~g~~~e~~~l~~~~~v----~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ 167 (251)
T d1ojxa_ 92 ANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARI----KRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIAL 167 (251)
T ss_dssp ESSCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHH----HHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHCHHCEEEEEEECCCCCHHHHHHHHHHH----HHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 0048999983301458999737998369999999999----999998099189997505875456778899999999999
Q ss_pred CCH--------HCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHH----HHHHHCCCCEEEECCCCCCCHHHH
Q ss_conf 300--------0121102221003678835999888888888999----999957995586368874004489
Q gi|254781160|r 169 DET--------CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEK----ETLHSLPFVTPLSLGPRILRSDTA 229 (245)
Q Consensus 169 ~~~--------~~~~~~~~~~~~~~~~~~i~i~IGPEGGfs~~E~----~~l~~~~~~~~vsLG~~ILR~ETA 229 (245)
+-. ..+...............+.++-||-++ +++|. ...-..| +..+-.|.+|.-.+..
T Consensus 168 ElGaDivK~~~p~~~~~~~~~v~~a~~~pv~~~gG~~~~-~~~~~l~~~~~a~~~G-a~G~~~GRni~q~~~p 238 (251)
T d1ojxa_ 168 ELGADAMKIKYTGDPKTFSWAVKVAGKVPVLMSGGPKTK-TEEDFLKQVEGVLEAG-ALGIAVGRNVWQRRDA 238 (251)
T ss_dssp HHTCSEEEECCCSSHHHHHHHHHHTTTSCEEEECCSCCS-SHHHHHHHHHHHHHTT-CCEEEESHHHHTSTTH
T ss_pred HHCCCEEEECCCCCHHHHHHHHHHCCCCCEEEECCCCCC-CHHHHHHHHHHHHHCC-CCEEEECHHHHCCCCH
T ss_conf 868988983489857889999871378765786799888-9999999999999879-9188526454575769
No 20
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=41.46 E-value=6.3 Score=17.20 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=34.4
Q ss_pred EECCCCCCCCEEEE-CHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECC
Q ss_conf 40854478888998-7798759987035789888999977998798753023
Q gi|254781160|r 11 FVDFPLCIKTQGKA-SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYV 61 (245)
Q Consensus 11 f~~~~l~~~~~i~L-~~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~ 61 (245)
|.+..++...++.+ |.+|+|| ++|+.+.|+.-..+.|.|.|...
T Consensus 12 fe~dIlsGkKTITIRD~SEshy-------~pG~~v~V~t~E~~~~fc~I~Il 56 (103)
T d1te7a_ 12 FQDDILAGRKTITIRDESESHF-------KTGDVLRVGRFEDDGYFCTIEVT 56 (103)
T ss_dssp HHHHHHTCCCEEEEECGGGCCC-------CTTSEEEEEETTTEEEEEEEEEE
T ss_pred HHHHHHCCCCEEEECCCHHCCC-------CCCCEEEEEECCCCCEEEEEEEE
T ss_conf 3678865994699525122456-------89988998983689889999999
No 21
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=36.61 E-value=8.8 Score=16.26 Aligned_cols=101 Identities=10% Similarity=0.041 Sum_probs=57.0
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 79875998703578988899997799879875302355523899754135555443135413445411567775444456
Q gi|254781160|r 26 GDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLDYMIQKSVEMG 105 (245)
Q Consensus 26 ~~~~hHl~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~~~~~~~~~~i~l~~~~~k~~~~~~ilqk~tELG 105 (245)
++-.+-+.+-|+-.-.-.|...|.+..+..+.= .-+++ . .-+..+.+++-....+....+++.+.+.|
T Consensus 21 ~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~--~y~sl---------~-dlp~~vDlvvi~vp~~~~~~~~~~~~~~g 88 (129)
T d2csua1 21 KKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVK--AYKSV---------K-DIPDEIDLAIIVVPKRFVKDTLIQCGEKG 88 (129)
T ss_dssp TSHHHHHHHHHTTCCSSEEEEECSSCSEETTEE--CBSST---------T-SCSSCCSEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHCCCCCEEEECCCCCCCCCEE--EECCH---------H-HCCCCCCEEEEECCHHHHHHHHHHHHHCC
T ss_conf 870899999999749970899626762308848--66535---------3-35778866788448677088899999739
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6565555420220112212233578899997512
Q gi|254781160|r 106 MGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139 (245)
Q Consensus 106 V~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsg 139 (245)
+..++.+.+-+++.... -...++-+.+.+..+|
T Consensus 89 ~~~~vi~s~Gf~e~~~~-~~~~~~~l~~~a~~~g 121 (129)
T d2csua1 89 VKGVVIITAGFGETGEE-GKREEKELVEIAHKYG 121 (129)
T ss_dssp CCEEEECCCSSTTSCHH-HHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCCCHH-HHHHHHHHHHHHHHCC
T ss_conf 98898713354644421-5999999999999859
No 22
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=33.00 E-value=13 Score=15.07 Aligned_cols=63 Identities=8% Similarity=-0.032 Sum_probs=39.1
Q ss_pred HHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCHHH
Q ss_conf 870357898889999779987987530235552389975413555544313541344541156
Q gi|254781160|r 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95 (245)
Q Consensus 33 ~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~~~~~~~~~~i~l~~~~~k~~~~~ 95 (245)
.++|+--.|..|.|---+|..+.+.+...+....+.+..-...........+-..++|++...
T Consensus 5 l~~L~~~~~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~g~~~IRG~~I~ 67 (72)
T d1i4k1_ 5 LDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVV 67 (72)
T ss_dssp HHHHHTTTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEESSSSEEEEEEEEEECGGGEE
T ss_pred HHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCEEEECCEEEEECCEEE
T ss_conf 999998689879999889999999999995999859934999916971859461999699299
No 23
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.90 E-value=13 Score=15.06 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=39.0
Q ss_pred HHHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCHHH
Q ss_conf 870357898889999779987987530235552389975413555544313541344541156
Q gi|254781160|r 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRLD 95 (245)
Q Consensus 33 ~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~~~~~~~~~~i~l~~~~~k~~~~~ 95 (245)
.++|+--.|..|.|---+|..+.+++..++....+.+..-...........+--..+|++...
T Consensus 4 l~~L~~~~g~~V~VeLkng~~~~G~L~~~D~~mNi~L~~~~~~~~~~~~~~~~~v~IRG~~I~ 66 (72)
T d1d3ba_ 4 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIR 66 (72)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEE
T ss_pred HHHHHHCCCCEEEEEECCCEEEEEEEEEECCCEEEEEEEEEEECCCCCEEECCEEEEECCEEE
T ss_conf 699986089999999899839999899994872589979999868984739486999899999
No 24
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}
Probab=31.73 E-value=14 Score=14.94 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=35.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 883599988888888899999995799558636887400448999999999
Q gi|254781160|r 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALV 237 (245)
Q Consensus 187 ~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~als~~ 237 (245)
.+++.++||+=-||+++= ...+. ..+|||+-++=-+-|.++++=++
T Consensus 95 g~~i~fiIGGa~G~~~~~---~~~a~--~~lsls~mT~pH~lar~~l~EQl 140 (153)
T d1ns5a_ 95 GRDVSLLIGGPEGLSPAC---KAAAE--QSWSLSALTLPHPLVRVLVAESL 140 (153)
T ss_dssp CSCEEEEECBTTBCCHHH---HHHCS--EEECCCSSCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHH---HHHHC--CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 674799997589878899---98528--18836657764899999999999
No 25
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=30.73 E-value=15 Score=14.83 Aligned_cols=61 Identities=11% Similarity=0.078 Sum_probs=38.1
Q ss_pred HHCCCCCCCEEEEEECCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCHH
Q ss_conf 7035789888999977998798753023555238997541355554431354134454115
Q gi|254781160|r 34 HVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQTKQSDVQYIFSPIKTNRL 94 (245)
Q Consensus 34 kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~k~~~~~i~~~~~~~~~~~~i~l~~~~~k~~~~ 94 (245)
++|+--.|..|.|---+|..+.+.+...++...+.+..-...........+-..++|++..
T Consensus 5 ~~L~~~~~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~l~~~~IRG~~I 65 (71)
T d1h641_ 5 DVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNV 65 (71)
T ss_dssp HHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGE
T ss_pred HHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCCEEECCCEEEECCEE
T ss_conf 8999868997999996999999999999899994992599994688372957199979969
No 26
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=28.21 E-value=15 Score=14.79 Aligned_cols=12 Identities=8% Similarity=0.315 Sum_probs=5.3
Q ss_pred CCCCEEEECCCC
Q ss_conf 443135413445
Q gi|254781160|r 79 QSDVQYIFSPIK 90 (245)
Q Consensus 79 ~~~i~l~~~~~k 90 (245)
+|++-++.|+|-
T Consensus 5 kp~iI~i~G~pG 16 (194)
T d1qf9a_ 5 KPNVVFVLGGPG 16 (194)
T ss_dssp CCEEEEEEESTT
T ss_pred CCCEEEEECCCC
T ss_conf 994899989999
No 27
>d1sf8a_ d.271.1.1 (A:) Chaperone protein HtpG {Escherichia coli [TaxId: 562]}
Probab=26.17 E-value=17 Score=14.32 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=18.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 88359998888888889999999579955863688740
Q gi|254781160|r 187 IPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRIL 224 (245)
Q Consensus 187 ~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~IL 224 (245)
..+-+.+++||+|+|..=...++..|. ......+||
T Consensus 24 ~~sP~~lv~~~~~~s~~M~kimk~~~~--~~~~~k~iL 59 (115)
T d1sf8a_ 24 TDTPAIVSTDADEMSTQMAKLFAAAGQ--KVPEVKYIF 59 (115)
T ss_dssp SSCCEEEECCTTSCCHHHHHHHHTTTS--CCCCCCCEE
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHCC--CCCCCCCEE
T ss_conf 567501253776467999999987402--466545323
No 28
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=25.62 E-value=17 Score=14.44 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=25.0
Q ss_pred CCCCCCH-HHHHHHHHCCCCEEEECCCCCCCHHH
Q ss_conf 8888888-99999995799558636887400448
Q gi|254781160|r 196 PEGGYHS-EEKETLHSLPFVTPLSLGPRILRSDT 228 (245)
Q Consensus 196 PEGGfs~-~E~~~l~~~~~~~~vsLG~~ILR~ET 228 (245)
.|||.+. +++..+.+.|+ ..+=.|..++|+.-
T Consensus 208 aESGI~t~~dv~~l~~~G~-davLIGeaLmk~~d 240 (247)
T d1a53a_ 208 AESGISERNEIEELRKLGV-NAFLIGSSLMRNPE 240 (247)
T ss_dssp EESCCCCHHHHHHHHHTTC-CEEEECHHHHHCTT
T ss_pred EECCCCCHHHHHHHHHCCC-CEEEECHHHCCCCC
T ss_conf 9638999999999997799-99998988768996
No 29
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}
Probab=23.34 E-value=18 Score=14.22 Aligned_cols=117 Identities=18% Similarity=0.286 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC
Q ss_conf 77544445665655554202201122122335788999975123443433200000011233322333212630001211
Q gi|254781160|r 97 MIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSEN 176 (245)
Q Consensus 97 ilqk~tELGV~~I~p~~~~rs~~~~~k~eR~~~ii~eA~eQsgr~~lP~i~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 176 (245)
-++++.+.|++=+. | --+..-+.++|.+.+-+++|-+..|......++.=-+..+ +|.-+..+ ..
T Consensus 74 ~~~~a~~aGa~fiv------s-------P~~~~~v~~~~~~~~i~~iPGv~TpsEi~~A~~~G~~~lK-~fPa~~~G-~~ 138 (202)
T d1wa3a1 74 QCRKAVESGAEFIV------S-------PHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILK-LFPGEVVG-PQ 138 (202)
T ss_dssp HHHHHHHHTCSEEE------C-------SSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEE-ETTHHHHH-HH
T ss_pred HHHHHHHHCCCEEE------C-------CCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCEEE-ECCHHHCC-HH
T ss_conf 99999860564774------7-------8773999999986599561781868899999977999897-54332159-88
Q ss_pred CHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 022210036788359998888888889999999579955863688740044899999
Q gi|254781160|r 177 SLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAA 233 (245)
Q Consensus 177 ~~~~~~~~~~~~~i~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ILR~ETA~i~a 233 (245)
.++.+.. ..+.+-++ |=||.+.+....+-++|. ..|.+|..+.+.+...|..
T Consensus 139 ~lk~l~~--p~p~i~~i--ptGGI~~~n~~~~l~aga-~avg~Gs~l~~~~~~~i~~ 190 (202)
T d1wa3a1 139 FVKAMKG--PFPNVKFV--PTGGVNLDNVCEWFKAGV-LAVGVGSALVKGTPDEVRE 190 (202)
T ss_dssp HHHHHHT--TCTTCEEE--EBSSCCTTTHHHHHHHTC-SCEEECHHHHCSCHHHHHH
T ss_pred HHHHHHC--CCCCCCEE--EECCCCHHHHHHHHHCCC-EEEEECHHHCCCCHHHHHH
T ss_conf 9999967--22478478--657999888999997899-2999835624899999999
No 30
>d1gsoa2 c.30.1.1 (A:-2-103) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Escherichia coli [TaxId: 562]}
Probab=21.54 E-value=9.8 Score=15.95 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=22.8
Q ss_pred EEEECCCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 99988888888899999995799558636887
Q gi|254781160|r 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPR 222 (245)
Q Consensus 191 ~i~IGPEGGfs~~E~~~l~~~~~~~~vsLG~~ 222 (245)
.++||||.=...-=.+.|++.|. + ..||+
T Consensus 69 lvviGPE~pL~~Gl~D~l~~~gI--~-vfGP~ 97 (105)
T d1gsoa2 69 LTIVGPEAPLVKGVVDTFRAAGL--K-IFGPT 97 (105)
T ss_dssp EEEECSHHHHHTTHHHHHHHTTC--C-EESCC
T ss_pred EEEECCHHHHHHHHHHHHHHCCC--E-EECCC
T ss_conf 89977088887699999998879--7-99928
No 31
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=21.29 E-value=22 Score=13.71 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=26.0
Q ss_pred HHHCCCCCCCEEEEEECCCCEEEEEEECCC-CCCEEEEE
Q ss_conf 870357898889999779987987530235-55238997
Q gi|254781160|r 33 AHVLRMKEGDNILLFNGKDGEWLSKISYVG-KSIRFKVE 70 (245)
Q Consensus 33 ~kVlRlk~Gd~i~i~dg~g~~~~~~I~~~~-k~~~~~i~ 70 (245)
.+=|+++.||.|.|.-|+..--.++|..+. +...+.++
T Consensus 8 ~~K~kikkGD~V~VisGkdKGk~G~Vl~V~~~~~~ViVe 46 (110)
T d2zjrr1 8 NDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE 46 (110)
T ss_dssp TSCCSSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEES
T ss_pred CCEEEEECCCEEEEEECCCCCCCEEEEEEECCCCEEEEE
T ss_conf 502243279999990458899614799998889999995
No 32
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.23 E-value=22 Score=13.71 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=22.0
Q ss_pred HHCCCCCCCEEEEEEC--CCCEEEEEEECCCC
Q ss_conf 7035789888999977--99879875302355
Q gi|254781160|r 34 HVLRMKEGDNILLFNG--KDGEWLSKISYVGK 63 (245)
Q Consensus 34 kVlRlk~Gd~i~i~dg--~g~~~~~~I~~~~k 63 (245)
.=|.+++||.|.|.+. ++++|.+++...++
T Consensus 25 ~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~ 56 (69)
T d1gcqc_ 25 PFLRLNPGDIVELTKAEAEHNWWEGRNTATNE 56 (69)
T ss_dssp CBCCBCTTCEEEEEECCTTCSEEEEEETTTTE
T ss_pred CEEEECCCCEEEEEEEECCCCEEEEEECCCCC
T ss_conf 87108599999998972689899999999998
No 33
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.72 E-value=22 Score=13.64 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=17.8
Q ss_pred CCCCCEEEEEECCCCEEEEEEEC
Q ss_conf 78988899997799879875302
Q gi|254781160|r 38 MKEGDNILLFNGKDGEWLSKISY 60 (245)
Q Consensus 38 lk~Gd~i~i~dg~g~~~~~~I~~ 60 (245)
.++||.|.+.|++|..|...++.
T Consensus 4 f~~Gd~Vll~~~~~~~~~~~l~~ 26 (264)
T d1i9ga_ 4 FSIGERVQLTDAKGRRYTMSLTP 26 (264)
T ss_dssp CCTTCEEEEEETTCCEEEEECCT
T ss_pred CCCCCEEEEEECCCCEEEEEECC
T ss_conf 99999899997899789999778
Done!