RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498
methyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(245 letters)
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown
function; 2.60A {Bacillus subtilis} (A:78-268)
Length = 191
Score = 144 bits (364), Expect = 1e-35
Identities = 42/174 (24%), Positives = 67/174 (38%), Gaps = 11/174 (6%)
Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISA 134
V K ++L+++IQK E+G A P + +R A
Sbjct: 5 KVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEA 64
Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIP----NV 190
AEQ +P + + + LL+ + V A E + + AI ++
Sbjct: 65 AEQSYRNEVPRVXDVHSFQQLLQRXQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSL 124
Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
I+ GPEGG E E L LGPRILR++TA + A++ +
Sbjct: 125 LIVFGPEGGLTEAEVERLTEQDG-VTCGLGPRILRTETAPLYALSAISYQTELL 177
>3kw2_A Probable R-RNA methyltransferase; structural genomics,
unknown function, PSI-2, protein structure initiative;
HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc
33277} (A:75-257)
Length = 183
Score = 143 bits (363), Expect = 1e-35
Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 7/170 (4%)
Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCD 139
+ +P K R ++ ++K VE+G+ + + + +++ +R+ ISA +Q
Sbjct: 4 RITIAIAPTKQSERXEWXLEKLVEIGVDEVVFIESEHSERRRIKAERLERIAISAXKQSL 63
Query: 140 ILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHA-----IAHIPNVAILI 194
+ P I ++ ++ + + A + + +V ILI
Sbjct: 64 KASFPVIRVNIPIQTVIADTPKAAVRLIAYVDEAVRAEITQGRGYPSDFYHVGQDVLILI 123
Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
GPEG + E E+ F P+SLG LR++TA + A + + +
Sbjct: 124 GPEGDFSPSEVESALLAGF-APVSLGESRLRTETAGLVACQWIHTLQACY 172
>1vhy_A Hypothetical protein HI0303; PSI, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus
influenzae} (A:78-257)
Length = 180
Score = 141 bits (357), Expect = 7e-35
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 11/170 (6%)
Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQ------NTHYNMDRVRTYTISA 134
+ + R ++ IQKSVE+G+ I P+ + + + + I+A
Sbjct: 4 KIHLGQVISRGERXEFTIQKSVELGVNVITPLWSERCGVKLDAERXDKKIQQWQKIAIAA 63
Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILI 194
EQC +P I P L+ D ++ + S++ L V +LI
Sbjct: 64 CEQCGRNIVPEIRPLXKLQDWCAENDGALKLNLHPR---AHYSIKTLPT-IPAGGVRLLI 119
Query: 195 GPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244
G EGG ++E F T + LG R+LR++TA++AA++ +Q GD
Sbjct: 120 GSEGGLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISALQICFGDL 168
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA
modification, PUA domain, M3U, SAM, structural genomics,
NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
(A:68-229)
Length = 162
Score = 136 bits (345), Expect = 2e-33
Identities = 31/164 (18%), Positives = 66/164 (40%), Gaps = 12/164 (7%)
Query: 81 DVQYIFSPIKT-NRLDYMIQKSVEMGMGAIRPVITRYTQ----NTHYNMDRVRTYTISAA 135
D+ S +D +++++ E+G+ P+I+ + ++ + I A
Sbjct: 5 DITLYQSVTVDLKTMDTIVRQATELGVLTFVPIISERSFQKEEAILKKTEKWKRIVIEAM 64
Query: 136 EQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIG 195
+Q I P L L+ + N + E ++ ++++G
Sbjct: 65 KQSRRPIPMEIKKPVRLSDLIPESEENIILDNFYE------GVKPKDVNLEAKTYSVVVG 118
Query: 196 PEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQA 239
PEGG+ E + L F + L P LR++TA V+ ++++
Sbjct: 119 PEGGFSKRESQILREKGF-KSVLLEPYTLRTETAVVSIVSILMN 161
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
transferase; 2.00A {Thermus thermophilus HB8} (A:68-228)
Length = 161
Score = 134 bits (338), Expect = 1e-32
Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYN---MDRVRTYTISAAEQ 137
+V + +K ++L +++ + E+G I+P++TR++ + R+R + AA+Q
Sbjct: 5 EVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEXGEGKLRRLRAVALEAAKQ 64
Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197
+ +P + PP L+ + + Q + A + + +A+ +GPE
Sbjct: 65 SGRVVVPEVLPPIPLKAVPQVA----QGLVAHVGATARV----REVLDPEKPLALAVGPE 116
Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242
GG+ EE L + F TP+SLG RILR++TAA+A +AL A G
Sbjct: 117 GGFAEEEVALLEARGF-TPVSLGRRILRAETAALALLALCTAGEG 160
>1z85_A Hypothetical protein TM1380; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI; 2.12A {Thermotoga maritima MSB8}
(A:83-234)
Length = 152
Score = 128 bits (324), Expect = 5e-31
Identities = 35/163 (21%), Positives = 69/163 (42%), Gaps = 15/163 (9%)
Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDI 140
+ + + R ++I+K VE+G+ I +Q ++D+ + AA+QC
Sbjct: 4 KLSVVVPIGRWERTRFLIEKCVELGVDEIFFHKFERSQ-HEISLDKAKIVVREAAKQCKR 62
Query: 141 LTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEGGY 200
P + + + ++ D + L ++ +++GPEGG+
Sbjct: 63 YLFPKVSFLE-------KLEFSGNVITLDLDAS-----QNLLDANLEGSITVVVGPEGGF 110
Query: 201 HSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGD 243
+E+E L S T +SLG +ILR +TAA+ + +
Sbjct: 111 SEKERELLRS--STTIVSLGKKILRFETAAILTVGYIALKKQK 151
>1vhy_A Hypothetical protein HI0303; PSI, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus
influenzae} (A:1-77)
Length = 77
Score = 67.5 bits (165), Expect = 1e-12
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
++I R++ L +TQ S D +++A VLR EG+ + LF+G + + +KI
Sbjct: 3 LRIP----RIYHPISLENQTQCYLSEDAANHVARVLRXTEGEQLELFDGSNHIYPAKIIE 58
Query: 61 VGK-SIRFKVEYQSRSQT 77
K S++ ++ + +
Sbjct: 59 SNKKSVKVEILGRELADK 76
>3kw2_A Probable R-RNA methyltransferase; structural genomics,
unknown function, PSI-2, protein structure initiative;
HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc
33277} (A:1-74)
Length = 74
Score = 61.3 bits (149), Expect = 1e-10
Identities = 13/77 (16%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 1 MKIHSHLKRLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISY 60
+ + + + D+ ++ VLR + GD + L +G+ + + I
Sbjct: 3 LSLP----LFYAPDIE---QSDRLPDDEAGHILRVLRXQAGDRLRLTDGRGSFFDAVIET 55
Query: 61 VGK-SIRFKVEYQSRSQ 76
+ S V Q Q
Sbjct: 56 ADRKSCYVSVCGQESWQ 72
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown
function; 2.60A {Bacillus subtilis} (A:1-77)
Length = 77
Score = 60.2 bits (146), Expect = 3e-10
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 9 RLFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64
R F++ + +G++ H++ +V R EGD I+ + E ++ V K
Sbjct: 5 RYFIELTKQQIEEAPTFSITGEEVHHIVNVXRXNEGDQIICCSQDGFEAKCELQSVSKDK 64
Query: 65 IRFKVEYQSRSQ 76
+ V +
Sbjct: 65 VSCLVIEWTNEN 76
>1z85_A Hypothetical protein TM1380; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI; 2.12A {Thermotoga maritima MSB8}
(A:1-82)
Length = 82
Score = 58.7 bits (142), Expect = 6e-10
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 11/83 (13%)
Query: 1 MKIHSHLKRLFVDFP-----LCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL 55
KIH P + + H+ V+R+KEGD I +G +
Sbjct: 4 DKIH----HHHHHXPHLFYGTAQNGEVIFDEREAHHX-RVVRLKEGDVIEATDGNGFSYT 58
Query: 56 SKISYVGK-SIRFKVEYQSRSQT 77
+ + K + K+ +
Sbjct: 59 CILKSLKKKTAAAKIVKVEEKEK 81
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein
binding; 1.50A {Rattus norvegicus} (A:)
Length = 97
Score = 30.2 bits (68), Expect = 0.30
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 15/81 (18%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS------KIS 59
PL I G ++ + + GD IL N + +
Sbjct: 17 PLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ 76
Query: 60 YVGKSIRFKVEYQSRSQTKQS 80
G+++ K++ Q+ +Q S
Sbjct: 77 MAGETVTLKIKKQTDAQPASS 97
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
transferase; 2.00A {Thermus thermophilus HB8} (A:1-67)
Length = 67
Score = 29.6 bits (66), Expect = 0.43
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQSRSQ 76
+L VLR + GD +F+G+ E L+++ +G +R++V + R +
Sbjct: 21 RHLVEVLRARVGDRFTVFDGER-EALAEVVDLGPPLRYRVLEERRPE 66
>2edv_A FERM and PDZ domain-containing protein 1;
cytoskeletal-associated protein, structural genomics,
NPPSFA; NMR {Homo sapiens} (A:)
Length = 96
Score = 29.0 bits (65), Expect = 0.58
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 13/69 (18%)
Query: 25 SGDQYHYLAHVL-------RMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEY 71
S + V ++ GD IL N + E LS + S+ V
Sbjct: 28 SESLPLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR 87
Query: 72 QSRSQTKQS 80
+ S
Sbjct: 88 CTSSGPSSG 96
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ
domain, ptpase, structural genomics, NPPSFA; NMR {Homo
sapiens} (A:)
Length = 119
Score = 29.2 bits (65), Expect = 0.60
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 16/85 (18%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL----------RMKEGDNILLFNGKDGEWLS------KI 58
+G ++ V R+ EGD ++L NG+D + I
Sbjct: 28 RFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI 87
Query: 59 SYVGKSIRFKVEYQSRSQTKQSDVQ 83
+ ++ R V+
Sbjct: 88 KASCERHSGELMLLVRPNAVYDVVE 112
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A (A:)
Length = 93
Score = 29.0 bits (65), Expect = 0.65
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS-----KISYVGKSIRFKVEYQSRSQT 77
A +KEGD I+ NG S K+ G + + S +
Sbjct: 42 AMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSSGPS 91
>3khf_A Microtubule-associated serine/threonine-protein kinase 3;
MAST3, microtubule associated serine/threonine kinase
3, PDZ domain, structural genomics; 1.20A {Homo
sapiens} PDB: 2w7r_A (A:)
Length = 99
Score = 28.7 bits (64), Expect = 0.68
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQTK 78
A ++ GD I NG+ L + G I + ++T
Sbjct: 47 AQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALENTETS 98
>2djt_A Unnamed protein product; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} (A:)
Length = 104
Score = 28.7 bits (64), Expect = 0.73
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS 56
L R + F L + +GD + +L R++ GD +L NG+ + L+
Sbjct: 16 ELVRGYAGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLT 75
Query: 57 ------KISYVGKSIRFKVEYQSRSQ 76
+I G + +
Sbjct: 76 HAQAVERIRAGGPQLHLVIRRPLSGP 101
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1;
coiled-coil, PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
(D:)
Length = 132
Score = 28.6 bits (63), Expect = 0.91
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A ++ GD ++ NG++ + I G ++ KV +R
Sbjct: 78 AWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPD 128
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} (A:)
Length = 118
Score = 28.4 bits (63), Expect = 1.00
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 16/74 (21%)
Query: 20 TQGKASGDQYHYLAHVL----------RMKEGDNILLFNGKDGEWLS------KISYVGK 63
++ + V + GD IL NG L I +
Sbjct: 36 ESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQ 95
Query: 64 SIRFKVEYQSRSQT 77
+++ +E+ Q
Sbjct: 96 TLQLLIEHDPVPQR 109
>2d90_A PDZ domain containing protein 1; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus} (A:)
Length = 102
Score = 28.3 bits (63), Expect = 1.0
Identities = 11/51 (21%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A +K D ++ NGK E L I G V +
Sbjct: 43 AEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEAESI 93
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
(A:)
Length = 91
Score = 27.9 bits (62), Expect = 1.2
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 15 PLCIKTQGKASGDQYHYLAHVLR--------MKEGDNILLFNGKDGEWLS------KISY 60
P + G +Q ++ V + GD I +G++ ++ +I
Sbjct: 14 PWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG 73
Query: 61 VGKSIRFKVEYQSRSQT 77
++ V
Sbjct: 74 CTDNLTLTVARSEHESD 90
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
(A:61-182)
Length = 122
Score = 28.1 bits (62), Expect = 1.2
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 15/78 (19%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS------KIS 59
L I +G ++ + + GD IL NG+D + +
Sbjct: 30 GLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 89
Query: 60 YVGKSIRFKVEYQSRSQT 77
GK + +V+Y
Sbjct: 90 KTGKEVVLEVKYMKEVSP 107
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI, signaling
protein; NMR {Mus musculus} (A:)
Length = 100
Score = 27.9 bits (62), Expect = 1.2
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A +++ D +L N + E +I I V S +
Sbjct: 49 AERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGPSS 99
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
(A:)
Length = 88
Score = 27.9 bits (62), Expect = 1.3
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 37 RMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
+ EGD IL NG E +S I ++ V
Sbjct: 39 NLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEHHH 85
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} (A:)
Length = 117
Score = 28.0 bits (62), Expect = 1.3
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 21 QGKASGDQYHYLAHVL-------RMKEGDNILLFNGKDGEWLS------KISYVGKSIRF 67
+G+ ++ VL ++E D +++ NG E + ++ GK
Sbjct: 39 PHFENGETSIVISDVLPGGPADGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAI 98
Query: 68 KVEYQSRSQT 77
V+ + Q
Sbjct: 99 VVKRPRKVQV 108
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens} (A:)
Length = 97
Score = 28.0 bits (62), Expect = 1.3
Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A ++ GD +L NG + + G +++ +V + +
Sbjct: 47 AARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERETSV 97
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Length = 110
Score = 28.0 bits (62), Expect = 1.3
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A ++ GD +L NG + + G +++ +V +S +
Sbjct: 59 AARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGPSS 109
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown
function; 1.80A {Homo sapiens} PDB: 3ch8_A (A:1-102)
Length = 102
Score = 27.6 bits (61), Expect = 1.4
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 13/69 (18%)
Query: 24 ASGDQYHYLAHVL-------RMKEGDNILLFNGKD------GEWLSKISYVGKSIRFKVE 70
D ++ V ++ GD I+ NG G+ +S + ++ +
Sbjct: 20 RPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIV 79
Query: 71 YQSRSQTKQ 79
+ + KQ
Sbjct: 80 REVGNGAKQ 88
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A (A:)
Length = 91
Score = 27.9 bits (62), Expect = 1.4
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A + +++ D I+ NG + +I GK++ V + T
Sbjct: 40 ADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQDT 90
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human
cDNA, riken structural genomics/proteomics initiative,
RSGI, unknown function; NMR {Homo sapiens} (A:)
Length = 117
Score = 27.6 bits (61), Expect = 1.5
Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 15/78 (19%)
Query: 18 IKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS------KISYVG 62
K SG+ Y+A +L ++ EG +L +NG + IS
Sbjct: 39 GKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQS 98
Query: 63 KSIRFKVEYQSRSQTKQS 80
V S
Sbjct: 99 GEAEICVRLDLNMSGPSS 116
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} (A:)
Length = 101
Score = 27.5 bits (61), Expect = 1.8
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 15 PLCIKTQGKASGDQYHYLAHVLR--------MKEGDNILLFNGKDGEWLSKISYV----- 61
L +G + Y++ V ++ GD IL N K ++ V
Sbjct: 22 GLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKG 81
Query: 62 GKSIRFKVEYQSRSQTKQS 80
K + V R S
Sbjct: 82 SKKLVLSVYSAGRISGPSS 100
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM
protein; PDZ domain, cytoskeleton, actin binding,
structural genomics; NMR {Mus musculus} (A:)
Length = 103
Score = 27.6 bits (61), Expect = 1.9
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL--------RMKEGDNILLFNGKDGEWLS------KISY 60
P + G +Q + + + GD IL +G E ++ +I
Sbjct: 16 PWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKA 75
Query: 61 VGKSIRFKVEYQSRSQT 77
+ K++
Sbjct: 76 ASYQLCLKIDRAETRLW 92
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} (A:)
Length = 94
Score = 27.5 bits (61), Expect = 1.9
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 14/76 (18%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL--------RMKEGDNILLFNGKDGEWLS------KISY 60
P + G + V ++ GD I+ NG+ E + KI
Sbjct: 17 PWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQ 76
Query: 61 VGKSIRFKVEYQSRSQ 76
+R +++ S
Sbjct: 77 SASPLRLQLDRSSGPS 92
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting
protein, STXBP4 protein, structural genomics, NPPSFA;
NMR {Mus musculus} (A:)
Length = 109
Score = 27.2 bits (60), Expect = 2.0
Identities = 13/90 (14%), Positives = 22/90 (24%), Gaps = 15/90 (16%)
Query: 6 HLKRLFVDFPLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS 56
L I + Y+ V+ R+K GD ++ N + +S
Sbjct: 19 ITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVS 78
Query: 57 ------KISYVGKSIRFKVEYQSRSQTKQS 80
I+ E S
Sbjct: 79 FEEAKSIITRAKLRSESPWEIAFIRSGPSS 108
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1;
acetylation, cell projection, disease mutation,
membrane, phosphoprotein, polymorphism; NMR {Homo
sapiens} (A:)
Length = 216
Score = 27.3 bits (59), Expect = 2.0
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKD------GEWLSKISYVGKSIRFKVEYQSRSQT 77
A ++ D I+ NG G+ +S I G + V + +
Sbjct: 46 AEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEF 96
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} (A:)
Length = 96
Score = 27.1 bits (60), Expect = 2.0
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS--------KISYVGKSIRFKVEYQSRSQT 77
+ EGD I+ N ++ + LS K +G + S +
Sbjct: 43 QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGPSS 95
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain,
RGS-3, human, structural genomics, structural genomics
consortium, SGC; 2.39A {Homo sapiens} (A:)
Length = 91
Score = 27.1 bits (60), Expect = 2.2
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 6/55 (10%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQTKQSD 81
A +++ D +L N + E +I I V D
Sbjct: 37 AERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVPQVKPGPD 91
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} (A:)
Length = 104
Score = 27.1 bits (60), Expect = 2.4
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 15 PLCIKTQGKASGDQYHYLAHVLR--------MKEGDNILLFNGKDGEWLSKISYV----- 61
L +G + +++ V+ ++EGD +L N D + + V
Sbjct: 28 QLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT 87
Query: 62 GKSIRFKVEYQSRSQT 77
+ I +V + S +
Sbjct: 88 AREISMRVRFFSGPSS 103
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of
70 kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus} (A:)
Length = 114
Score = 27.1 bits (60), Expect = 2.4
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A + +GD +L NG + + G S+ V +
Sbjct: 51 AEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEK 101
>1v62_A KIAA1719 protein; structural genomics, synaptic
transmission, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
(A:)
Length = 117
Score = 26.8 bits (59), Expect = 2.5
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 15/71 (21%)
Query: 22 GKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS------KISYVGKSIR 66
+ + + GD+IL +G E S ++ + + +R
Sbjct: 36 TSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVR 95
Query: 67 FKVEYQSRSQT 77
++ +SQ
Sbjct: 96 LEILPVPQSQR 106
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} (A:)
Length = 126
Score = 27.0 bits (59), Expect = 2.6
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGK------DGEWLSKISYVGKSIRFKVEYQSRSQT 77
A + GD I+ NG+ + ++ I ++ V + +
Sbjct: 74 AFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKDSGPS 124
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A
{Pyrococcus woesei} (A:)
Length = 225
Score = 26.8 bits (58), Expect = 2.6
Identities = 15/153 (9%), Positives = 36/153 (23%), Gaps = 8/153 (5%)
Query: 95 DYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFIYPPTTLEF 154
+ E A + + + I AE+ ++T+ P
Sbjct: 74 SHTGHVLPEAVKEAGAVGTL-LNHSENRMILADLEAAIRRAEEVGLMTMVCSNNPAVSAA 132
Query: 155 LLKNWDHNCQIVFAD-----ETCGSENSLEKLHAIAHIPNVA--ILIGPEGGYHSEEKET 207
+ + + + + + V + + G + E
Sbjct: 133 VAALNPDYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVK 192
Query: 208 LHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240
+ L + ++ A LV I
Sbjct: 193 KAIELGTVGVLLASGVTKAKDPEKAIWDLVSGI 225
>2eei_A PDZ domain-containing protein 1; regulatory factor,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} (A:)
Length = 106
Score = 26.8 bits (59), Expect = 2.6
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A + D+++ NG++ E S K+ G + F + + +
Sbjct: 45 AMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKR 95
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1,
PDZ domain, PDZ2, acetylation, cell projection,
membrane, polymorphism; NMR {Homo sapiens} (A:)
Length = 98
Score = 26.8 bits (59), Expect = 2.7
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A ++ D I+ NG E I G + V + +
Sbjct: 46 AEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETDEF 96
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif
containing isoform B; GOPC PDZ domain, structural
protein; NMR {Homo sapiens} (A:)
Length = 103
Score = 26.8 bits (59), Expect = 2.8
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 15/78 (19%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS------KIS 59
L I G ++ + + GD IL NG + +S
Sbjct: 22 GLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS 81
Query: 60 YVGKSIRFKVEYQSRSQT 77
I F+V Y +
Sbjct: 82 QQRGEIEFEVVYVALEHH 99
>2vph_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4,
ptpmeg, hydrolase, cytoplasm, cytoskeleton,
megakaryocyte, dephosphorylation; 1.90A {Homo sapiens}
(A:)
Length = 100
Score = 26.8 bits (59), Expect = 2.9
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 16/84 (19%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL----------RMKEGDNILLFNGKDGEWLS------KI 58
+G ++ V R+ EGD ++L NG+D + I
Sbjct: 17 RFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFI 76
Query: 59 SYVGKSIRFKVEYQSRSQTKQSDV 82
+ ++ R +S V
Sbjct: 77 KASCERHSGELMLLVRPNAVESTV 100
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens} (A:)
Length = 116
Score = 26.8 bits (59), Expect = 3.0
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 15/71 (21%)
Query: 22 GKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS------KISYVGKSIR 66
GK + + V R+ GD IL NG D S + + +R
Sbjct: 37 GKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVR 96
Query: 67 FKVEYQSRSQT 77
V
Sbjct: 97 LVVYRDEAHYR 107
>2v90_A PDZ domain-containing protein 3; alternative splicing,
membrane, cytoplasm, protein-binding; 2.00A {Homo
sapiens} (A:)
Length = 96
Score = 26.4 bits (58), Expect = 3.4
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A M+ GD ++ G+ E L +I G + V +
Sbjct: 43 AKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEADRE 93
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} (A:)
Length = 103
Score = 26.3 bits (58), Expect = 3.7
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 15/78 (19%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS------KIS 59
+G Y+ + RM+ GD I+ NG+ ++ I
Sbjct: 23 GFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK 82
Query: 60 YVGKSIRFKVEYQSRSQT 77
G+ +R ++ + S
Sbjct: 83 SGGRRVRLLLKRGTGSGP 100
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
(A:1-102)
Length = 102
Score = 26.4 bits (58), Expect = 3.9
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 37 RMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
+++GD IL NG D S + G+++ +Y+ +
Sbjct: 56 ELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYS 102
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A
{Homo sapiens} (A:)
Length = 91
Score = 26.4 bits (58), Expect = 3.9
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A + GD ++ NG++ E + +I ++R V +
Sbjct: 40 AEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETDEQ 90
>2edp_A Fragment, shroom family member 4; APX/shroom family
member, KIAA1202 protein, structural genomics, NPPSFA;
NMR {Homo sapiens} (A:)
Length = 100
Score = 26.3 bits (58), Expect = 4.0
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 14/76 (18%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKD-----GEWLSKISY 60
P +G + ++ + +M+ GD ++ NG E L I
Sbjct: 22 PWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGSRQEALILIKG 81
Query: 61 VGKSIRFKVEYQSRSQ 76
+ ++ V ++
Sbjct: 82 SFRILKLIVRRRNSGP 97
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} (A:)
Length = 108
Score = 26.5 bits (58), Expect = 4.0
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 37 RMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQTKQ 79
R+ +GD +L NG E + + G+ + +E +K+
Sbjct: 60 RIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSKE 108
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} (A:)
Length = 109
Score = 26.1 bits (57), Expect = 4.2
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A ++ GD ++ NG++ + I G ++ KV +R
Sbjct: 58 AWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPD 108
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesion; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A (A:)
Length = 107
Score = 26.0 bits (57), Expect = 4.3
Identities = 10/75 (13%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 18 IKTQGKASGDQYHYLAHVL-------RMKEGDNILLFNGKDGEWLS------KISYVGKS 64
SG+ ++ VL +++E D + + NG + + ++ GK+
Sbjct: 29 RDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKN 88
Query: 65 IRFKVEYQSRSQTKQ 79
+ + + ++
Sbjct: 89 AKITIRRKKGGGWRR 103
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands
and two alpha-helices, protein binding; NMR {Rattus
norvegicus} (A:)
Length = 91
Score = 26.0 bits (57), Expect = 4.3
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 6/44 (13%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVE 70
+ +K D +L N I+ G + +
Sbjct: 45 GDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVIS 88
>1u3b_A Amyloid beta A4 precursor protein-binding, family A,
member 1; X11S/mints, PDZ domain, scaffold protein,
protein trafficking, protein transport; NMR {Homo
sapiens} (A:91-185)
Length = 95
Score = 26.3 bits (58), Expect = 4.3
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
A ++ G I+ NG+ +S I K + +
Sbjct: 35 AERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYRL 85
>3i1n_U 50S ribosomal protein L24; ribosome structure, protein-RNA
complex, acetylation, ribonucleoprotein, ribosomal
protein, RNA-binding, rRNA- binding, methylation; 3.19A
{Escherichia coli k-12} PDB: 1vs8_U 1vs6_U 3i1p_U
3i1r_U 3i1t_U 3i20_U 3i22_U 3e1b_O 3e1d_O 2qam_U*
1p85_S 1p86_S 2awb_U 2aw4_U 2i2v_U 2i2t_U* 2qao_U*
2qba_U* 2qbc_U* 2qbe_U ... (U:1-25,U:67-104)
Length = 63
Score = 26.0 bits (58), Expect = 4.5
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 10/45 (22%)
Query: 36 LRMKEGDNILLFNGKD----GEWLSKISYV----GKSIR--FKVE 70
+++ D +++ GKD G+ +S ++ GK+ R F+ E
Sbjct: 3 AKIRRDDEVIVLTGKDKGKRGKVVSNVAIFNAATGKADRVGFRFE 47
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens} (A:)
Length = 120
Score = 26.0 bits (57), Expect = 4.7
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 37 RMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
R++EGD IL NG+D + L G ++ +V+++ + Q
Sbjct: 65 RLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQN 111
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger,
heterodimer, membrane protein/oxidoreductase complex;
1.90A {Mus musculus} (A:)
Length = 90
Score = 25.9 bits (57), Expect = 4.7
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 15/72 (20%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS------KIS 59
L I +G ++ + + GD IL NG+D + +
Sbjct: 17 GLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 76
Query: 60 YVGKSIRFKVEY 71
GK + +V+Y
Sbjct: 77 KTGKEVVLEVKY 88
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide
complex, PDZ tandem, alternative splicing, cell
junction, cytoplasm; 2.30A {Rattus norvegicus} (A:1-97)
Length = 97
Score = 26.0 bits (57), Expect = 5.6
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS------KIS 59
L + G D ++++ ++ GD I NG + +
Sbjct: 20 TLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK 79
Query: 60 YVGKSIRFKVEYQSRSQT 77
VG+ + +VEY+ +
Sbjct: 80 NVGERVVLEVEYELPPVS 97
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived
high affinity ligand, protein binding; 1.70A {Homo
sapiens} (A:)
Length = 112
Score = 25.7 bits (56), Expect = 5.6
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 33 AHVLRMKEGDNILLFNGK---DGEWLSKISYVGKSIRFKVEYQSRSQT 77
+ +++GD I+ NG+ D L + + +V +
Sbjct: 48 SQRGGIQDGDIIVKVNGRPLVDSSELQEAVLTESPLLLEVRRGNDDLL 95
>1uju_A Scribble; PDZ domain, cellular signaling, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Homo sapiens}
(A:)
Length = 111
Score = 25.7 bits (56), Expect = 5.7
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 37 RMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
R++ G +L N + L+ + VG ++ V S
Sbjct: 62 RLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESGP 108
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
(A:)
Length = 94
Score = 25.9 bits (57), Expect = 5.8
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 14/75 (18%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL--------RMKEGDNILLFNGKDGEWLS------KISY 60
P + G ++ V + GD I NG+ E ++ +I
Sbjct: 19 PWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG 78
Query: 61 VGKSIRFKVEYQSRS 75
+ V S
Sbjct: 79 CHDHLTLSVSSGPSS 93
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural
genomics, PDZ domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} (A:)
Length = 127
Score = 25.8 bits (56), Expect = 6.0
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 9/52 (17%)
Query: 14 FPLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS 56
L + D ++ ++ R++ D ++ NG+ S
Sbjct: 41 VSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKS 92
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglobulin domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3bp5_A 1npu_A (A:)
Length = 117
Score = 25.6 bits (57), Expect = 6.3
Identities = 5/57 (8%), Positives = 12/57 (21%), Gaps = 9/57 (15%)
Query: 23 KASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSIRFKVEYQ-SRSQTK 78
S + + R+ E + S +Q + +
Sbjct: 22 SLSNWSEDLMLNWNRLSPS--------NQTEKQAAFSNGLSQPVQDARFQIIQLPNR 70
>3cyy_A Tight junction protein ZO-1; protein-ligand complex,
alternative splicing, cell junction, membrane,
phosphoprotein, polymorphism; 2.40A {Homo sapiens} (A:)
Length = 92
Score = 25.6 bits (56), Expect = 6.6
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 37 RMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQT 77
++EGD +L NG E +S I ++ V+ R+
Sbjct: 41 NIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERATL 87
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens} (A:)
Length = 117
Score = 25.6 bits (56), Expect = 6.9
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 16/69 (23%)
Query: 25 SGDQYHYLAHVL---------RMKEGDNILLFNGKD-------GEWLSKISYVGKSIRFK 68
G+ ++ + R+KE D IL NG+ + +S + +++
Sbjct: 46 RGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLV 105
Query: 69 VEYQSRSQT 77
+ S Q
Sbjct: 106 IARGSLPQY 114
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
(A:)
Length = 114
Score = 25.7 bits (56), Expect = 7.0
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 13/76 (17%)
Query: 15 PLCIKTQGKASGDQYHYLAHVLR--------MKEGDNILLFNGKDGEWLS-----KISYV 61
L +++HV ++ GD I+ NG D L +
Sbjct: 28 GLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKS 87
Query: 62 GKSIRFKVEYQSRSQT 77
+S+ + + +
Sbjct: 88 SRSLTISIVAAAGREL 103
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate,
TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A
{Oceanobacillus iheyensis HTE831} (A:1-217)
Length = 217
Score = 25.4 bits (55), Expect = 7.1
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 24 ASGDQYHYLAHVLRMKEGDNILLFNGKDGEWL 55
A D + + N+ G +W
Sbjct: 169 AINDIQRVTQVXRAVPKSSNVAFICGTAEKWA 200
>2joa_A Serine protease HTRA1; PDZ, beta-sandwich,
cyclically-permuted, protein binding; NMR {Homo
sapiens} (A:)
Length = 105
Score = 25.3 bits (55), Expect = 7.6
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 33 AHVLRMKEGDNILLFNGK---DGEWLSKISYVGKSIRFKVEYQSRSQT 77
A +KE D I+ NG+ +S + ++ V +
Sbjct: 48 AEAGGLKENDVIISINGQSVVSANDVSDVIKRESTLNMVVRRGNEDIM 95
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2;
phosphorylation, structural genomics, structural
genomics consortium, SGC, unknown function; 1.45A {Homo
sapiens} PDB: 2ozf_A (A:)
Length = 90
Score = 25.2 bits (55), Expect = 7.7
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 33 AHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVE 70
A ++ D ++ NG++ E L I R V
Sbjct: 41 AARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVV 84
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; transferase, structural
genomics, structural genomics consortium, SGC; HET:
HIS; 2.05A {Homo sapiens} (A:)
Length = 92
Score = 25.2 bits (55), Expect = 8.1
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 15/77 (19%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS------KIS 59
+G + Y+ + +M+ GD IL NG+ + + I
Sbjct: 14 GFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK 73
Query: 60 YVGKSIRFKVEYQSRSQ 76
G+ +R ++ S
Sbjct: 74 NGGRRVRLFLKRGETSV 90
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural
genomics, structural genomics consortium, SGC, metal
binding protein; 1.70A {Homo sapiens} (A:)
Length = 87
Score = 25.2 bits (55), Expect = 8.2
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 14/70 (20%)
Query: 15 PLCIKTQGKASGDQYHYLAHVLR--------MKEGDNILLFNGKDGEWLS------KISY 60
P + G + V ++ GD I+ NG+ E + KI
Sbjct: 13 PWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQ 72
Query: 61 VGKSIRFKVE 70
+R +++
Sbjct: 73 SPSPLRLQLD 82
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5,
PALS1 protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} (A:)
Length = 113
Score = 25.3 bits (55), Expect = 8.2
Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 15/68 (22%)
Query: 24 ASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS------KISYVGKSIRFK 68
+ ++ ++ + EGD +L NG + +S + ++ F
Sbjct: 44 RNEMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV 103
Query: 69 VEYQSRSQ 76
+ S
Sbjct: 104 LIPSSGPS 111
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus} (A:)
Length = 85
Score = 25.1 bits (55), Expect = 8.4
Identities = 9/73 (12%), Positives = 23/73 (31%), Gaps = 17/73 (23%)
Query: 15 PLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS--------K 57
G D++ + ++ +M+ GD I+ N + +
Sbjct: 12 GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQ 71
Query: 58 ISYVGKSIRFKVE 70
+G S+ ++
Sbjct: 72 SIPIGASVDLELC 84
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein
linker, structural genomics, structural genomics
consortium, SGC, structural protein; 1.76A {Homo
sapiens} (A:)
Length = 103
Score = 25.3 bits (55), Expect = 8.5
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 38 MKEGDNILLFNGKD------GEWLSKISYVGKSIRFKVEYQSRSQ 76
+K GD I+ +G D + + I G + F V+ ++
Sbjct: 58 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIISTR 102
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome,
USH1, riken structural genomics/proteomics initiative,
RSGI, protein binding; NMR {Mus musculus} (A:)
Length = 118
Score = 25.3 bits (55), Expect = 8.5
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 9/46 (19%)
Query: 20 TQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS 56
G S ++ V + +GD I+ NGK +
Sbjct: 35 EGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT 80
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,873,622
Number of extensions: 80822
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 81
Length of query: 245
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 159
Effective length of database: 2,048,819
Effective search space: 325762221
Effective search space used: 325762221
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)