RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781160|ref|YP_003065573.1| 16S rRNA m3U1498 methyltransferase [Candidatus Liberibacter asiaticus str. psy62] (245 letters) >d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} Length = 180 Score = 125 bits (316), Expect = 3e-30 Identities = 43/170 (25%), Positives = 69/170 (40%), Gaps = 11/170 (6%) Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISA 134 V K ++L+++IQK E+G A P + + +R A Sbjct: 7 KVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEA 66 Query: 135 AEQCDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIA----HIPNV 190 AEQ +P + + + LL+ + V A E + + AI ++ Sbjct: 67 AEQSYRNEVPRVMDVHSFQQLLQRMQDFDKCVVAYEESSKQGEISAFSAIVSSLPKGSSL 126 Query: 191 AILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAI 240 I+ GPEGG E E L V LGPRILR++TA + A++ + Sbjct: 127 LIVFGPEGGLTEAEVERLTEQDGV-TCGLGPRILRTETAPLYALSAISYQ 175 >d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]} Length = 174 Score = 124 bits (312), Expect = 7e-30 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 85 IFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYT------QNTHYNMDRVRTYTISAAEQC 138 + R+++ IQKSVE+G+ I P+ + + + + + I+A EQC Sbjct: 10 GQVISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKKIQQWQKIAIAACEQC 69 Query: 139 DILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPEG 198 +P I P L+ D ++ S +L + A V +LIG EG Sbjct: 70 GRNIVPEIRPLMKLQDWCAENDGALKLNLHPRAHYSIKTLPTIPA----GGVRLLIGSEG 125 Query: 199 GYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICGDW 244 G ++E F T + LG R+LR++TA++AA++ +Q GD Sbjct: 126 GLSAQEIAQTEQQGF-TEILLGKRVLRTETASLAAISALQICFGDL 170 >d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]} Length = 162 Score = 120 bits (301), Expect = 1e-28 Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 12/165 (7%) Query: 81 DVQYIFSPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVR---TYTISAAEQ 137 +V + +K ++L +++ + E+G I+P++TR++ ++R + AA+Q Sbjct: 6 EVVLYVALLKGDKLAEVVRAATELGATRIQPLVTRHSVPKEMGEGKLRRLRAVALEAAKQ 65 Query: 138 CDILTLPFIYPPTTLEFLLKNWDHNCQIVFADETCGSENSLEKLHAIAHIPNVAILIGPE 197 + +P + PP L+ + + V A + +A+ +GPE Sbjct: 66 SGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARV--------REVLDPEKPLALAVGPE 117 Query: 198 GGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAVAAMALVQAICG 242 GG+ EE L + F TP+SLG RILR++TAA+A +AL A G Sbjct: 118 GGFAEEEVALLEARGF-TPVSLGRRILRAETAALALLALCTAGEG 161 >d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]} Length = 72 Score = 67.9 bits (166), Expect = 8e-13 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 9 RLFVDFPLCIKTQGKASGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-SIRF 67 R++ L +TQ S D +++A VLRM EG+ + LF+G + + +KI K S++ Sbjct: 4 RIYHPISLENQTQCYLSEDAANHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKV 63 Query: 68 KVE 70 ++ Sbjct: 64 EIL 66 >d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} Length = 72 Score = 64.5 bits (157), Expect = 8e-12 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 9 RLFVDFPLCIKTQGKA---SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLSKISYVGK-S 64 R F++ + +G++ H++ +V+RM EGD I+ + E ++ V K Sbjct: 2 RYFIELTKQQIEEAPTFSITGEEVHHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDK 61 Query: 65 IRFKVE 70 + V Sbjct: 62 VSCLVI 67 >d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95 Score = 27.1 bits (60), Expect = 1.6 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 15/81 (18%) Query: 15 PLCIKTQGKASGDQYHYLAHVL---------RMKEGDNILLFNGKDGEWLS------KIS 59 PL I G ++ + + GD IL N + + Sbjct: 15 PLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ 74 Query: 60 YVGKSIRFKVEYQSRSQTKQS 80 G+++ K++ Q+ +Q S Sbjct: 75 MAGETVTLKIKKQTDAQPASS 95 >d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103 Score = 26.5 bits (58), Expect = 2.3 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 9/65 (13%) Query: 25 SGDQYHYLAHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRSQTK 78 + A + GD IL +G E ++ +I + K++ R++T+ Sbjct: 34 TRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKID---RAETR 90 Query: 79 QSDVQ 83 Q Sbjct: 91 LWSPQ 95 >d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91 Score = 25.7 bits (56), Expect = 4.2 Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 6/44 (13%) Query: 33 AHVLRMKEGDNILLFNGKD------GEWLSKISYVGKSIRFKVE 70 + +K D +L N + I+ G + + Sbjct: 45 GDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVIS 88 >d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Score = 25.3 bits (55), Expect = 4.8 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSRS 75 A ++ GD I+ NG+ E + KI +R +++ S Sbjct: 40 RGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGP 91 >d2mev3_ b.121.4.1 (3:) Mengo encephalomyocarditis virus coat proteins {Mengovirus [TaxId: 12107]} Length = 231 Score = 25.2 bits (55), Expect = 4.9 Identities = 24/125 (19%), Positives = 38/125 (30%), Gaps = 20/125 (16%) Query: 31 YLAHVLRMKEGDNILLFNGKDGEWLSKISYVGKSI---RFKVEYQSRSQTK-QSDVQYIF 86 +LA + R F G + + G ++ +F + Y K S Q + Sbjct: 93 FLAALSRN--------FAQYRGSLVYTFVFTGTAMMKGKFLIAYTPPGAGKPTSRDQAMQ 144 Query: 87 SPIKTNRLDYMIQKSVEMGMGAIRPVITRYTQNTHYNMDRVRTYTISAAEQCDILTLPFI 146 + D + S + I P R N+ V + LT P Sbjct: 145 ATYAI--WDLGLNSSYSFTVPFISPTHFRMVGTDQANITNVDGWV-----TVWQLT-PLT 196 Query: 147 YPPTT 151 YPP Sbjct: 197 YPPGC 201 >d2h9fa2 d.21.1.4 (A:187-395) Hypothetical protein PA0793 {Pseudomonas aeruginosa [TaxId: 287]} Length = 209 Score = 24.9 bits (54), Expect = 6.3 Identities = 12/65 (18%), Positives = 21/65 (32%) Query: 172 CGSENSLEKLHAIAHIPNVAILIGPEGGYHSEEKETLHSLPFVTPLSLGPRILRSDTAAV 231 G + E+ H P +A + P + K + +L L Sbjct: 74 MGLIKTPEEAATRQHTPKIAFVAPPRDYRTASGKLVAAGDIDLLVRALSMGKLHHAMMGT 133 Query: 232 AAMAL 236 AA+A+ Sbjct: 134 AAVAI 138 >d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Score = 24.4 bits (53), Expect = 8.3 Identities = 7/51 (13%), Positives = 21/51 (41%), Gaps = 6/51 (11%) Query: 30 HYLAHVLRMKEGDNILLFNGKDGEWLS------KISYVGKSIRFKVEYQSR 74 A ++ +GD ++ +G + + ++ KI ++ ++ R Sbjct: 35 GSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSKR 85 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.136 0.414 Gapped Lambda K H 0.267 0.0632 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 918,834 Number of extensions: 40622 Number of successful extensions: 123 Number of sequences better than 10.0: 1 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 13 Length of query: 245 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 162 Effective length of database: 1,268,006 Effective search space: 205416972 Effective search space used: 205416972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 52 (24.0 bits)