HHsearch alignment for GI: 254781161 and conserved domain: TIGR03105
>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=98.23 E-value=3.5e-05 Score=50.12 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=85.3
Q ss_pred HHHHHHHHCCCCCCCCEEEEEEEEEEEECCC-CC--CCC---------HH--HHHHHHHHHHHHHHHCCCCEEECCCCEE
Q ss_conf 9999998379872035586777653874765-78--487---------11--2234999999755524886461278410
Q gi|254781161|r 16 DLVQHIASGIKPQEEFRIGTEHESFIFSRAD-HR--PLP---------YD--GEKSIVTILQAIQKKLAWKEIMDKGNII 81 (457)
Q Consensus 16 ~l~~~f~~g~k~~~~~~IG~E~E~flvd~~~-~~--p~~---------~~--~~~~i~~~L~~l~~~~~~~~~~~~~~~~ 81 (457)
T Consensus 104 ~~~~~~~~G~~----~~~g~ElEF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l---------~~~ 170 (435)
T TIGR03105 104 QLAEAAELGLT----LNTGVECEFFLLRRDEDGSLSIADRADTLAKPCYDQRGLMRRYDVLTEISDAM---------NAL 170 (435)
T ss_pred HHHHHHHCCCC----EEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------HHC
T ss_conf 99999965992----89767627999821688985567877767788667200101679999999999---------977
Q ss_pred CCCCCCCCCCEEECCC-CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCHHHHHHHH
Q ss_conf 2334568870341354-202420110101567788888878887874210387342105687888454200000135666
Q gi|254781161|r 82 GLANPLSKAGISIEPG-GQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLM 160 (457)
Q Consensus 82 ~l~~~~~~~~it~ep~-~qlE~s~~~~~~~~e~~~~~~~~~~~l~~il~~~~~~~~~~g~~P~~~~~~~~~~~~~Ry~~m 160 (457)
T Consensus 171 Gi~----ve~~~~E~gpGQ~Ei~l~~~~-~l~aAD~~~~~K~~ik~iA~~~G~~ATFMp-KP~~~--------------- 229 (435)
T TIGR03105 171 GWD----PYQNDHEDANGQFEMNFTYAD-ALTTADRHAFFRYMVKEIAEKHGMRATFMP-KPFAD--------------- 229 (435)
T ss_pred CCC----EEEEECCCCCCCEEEEECCCC-HHHHHHHHHHHHHHHHHHHHHCCCEEEECC-CCCCC---------------
T ss_conf 997----188664657981699726799-899999999999999999998099899703-13789---------------
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCHH--H-HH-----H---HHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 6654321126788876313404751478988--9-99-----9---999-998765678887437865588778743226
Q gi|254781161|r 161 KKYMPQVGTHGLDMMFRTCTTQVSLDFSSEH--D-MA-----T---KLR-VSFKLQPLATAIFASSPFAEGRINGFQSWR 228 (457)
Q Consensus 161 ~~~~~~~g~~~~~mm~~tas~Qv~id~~~~~--d-~~-----~---~~n-~a~~l~P~llAL~aNSPf~~G~~~g~~s~R 228 (457)
T Consensus 230 -----~~----------GsG~HiH~SL~d~~g~n~f~d~~~~~~~glS~~~~~fiaGlL~~~~~l~a~~~Pt~N---SYk 291 (435)
T TIGR03105 230 -----LT----------GNGCHFHLSLWDEDGRNLFADDSDPNGLGLSKLAYHFIGGILHHAPALCAVLAPTVN---SYK 291 (435)
T ss_pred -----CC----------CCEEEEEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCC---CCC
T ss_conf -----99----------870038986775999760368987665554599999999999861323150147765---211
Q ss_pred HH
Q ss_conf 88
Q gi|254781161|r 229 SE 230 (457)
Q Consensus 229 ~~ 230 (457)
T Consensus 292 Rl 293 (435)
T TIGR03105 292 RL 293 (435)
T ss_pred CC
T ss_conf 15