HHsearch alignment for GI: 254781161 and conserved domain: TIGR03105

>TIGR03105 gln_synth_III glutamine synthetase, type III. This family consists of the type III isozyme of glutamine synthetase, originally described in Rhizobium meliloti, where types I and II also occur.
Probab=98.23  E-value=3.5e-05  Score=50.12  Aligned_cols=163  Identities=18%  Similarity=0.207  Sum_probs=85.3

Q ss_pred             HHHHHHHHCCCCCCCCEEEEEEEEEEEECCC-CC--CCC---------HH--HHHHHHHHHHHHHHHCCCCEEECCCCEE
Q ss_conf             9999998379872035586777653874765-78--487---------11--2234999999755524886461278410
Q gi|254781161|r   16 DLVQHIASGIKPQEEFRIGTEHESFIFSRAD-HR--PLP---------YD--GEKSIVTILQAIQKKLAWKEIMDKGNII   81 (457)
Q Consensus        16 ~l~~~f~~g~k~~~~~~IG~E~E~flvd~~~-~~--p~~---------~~--~~~~i~~~L~~l~~~~~~~~~~~~~~~~   81 (457)
T Consensus       104 ~~~~~~~~G~~----~~~g~ElEF~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l---------~~~  170 (435)
T TIGR03105       104 QLAEAAELGLT----LNTGVECEFFLLRRDEDGSLSIADRADTLAKPCYDQRGLMRRYDVLTEISDAM---------NAL  170 (435)
T ss_pred             HHHHHHHCCCC----EEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---------HHC
T ss_conf             99999965992----89767627999821688985567877767788667200101679999999999---------977


Q ss_pred             CCCCCCCCCCEEECCC-CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCHHHHHHHH
Q ss_conf             2334568870341354-202420110101567788888878887874210387342105687888454200000135666
Q gi|254781161|r   82 GLANPLSKAGISIEPG-GQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLM  160 (457)
Q Consensus        82 ~l~~~~~~~~it~ep~-~qlE~s~~~~~~~~e~~~~~~~~~~~l~~il~~~~~~~~~~g~~P~~~~~~~~~~~~~Ry~~m  160 (457)
T Consensus       171 Gi~----ve~~~~E~gpGQ~Ei~l~~~~-~l~aAD~~~~~K~~ik~iA~~~G~~ATFMp-KP~~~---------------  229 (435)
T TIGR03105       171 GWD----PYQNDHEDANGQFEMNFTYAD-ALTTADRHAFFRYMVKEIAEKHGMRATFMP-KPFAD---------------  229 (435)
T ss_pred             CCC----EEEEECCCCCCCEEEEECCCC-HHHHHHHHHHHHHHHHHHHHHCCCEEEECC-CCCCC---------------
T ss_conf             997----188664657981699726799-899999999999999999998099899703-13789---------------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCCCHH--H-HH-----H---HHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             6654321126788876313404751478988--9-99-----9---999-998765678887437865588778743226
Q gi|254781161|r  161 KKYMPQVGTHGLDMMFRTCTTQVSLDFSSEH--D-MA-----T---KLR-VSFKLQPLATAIFASSPFAEGRINGFQSWR  228 (457)
Q Consensus       161 ~~~~~~~g~~~~~mm~~tas~Qv~id~~~~~--d-~~-----~---~~n-~a~~l~P~llAL~aNSPf~~G~~~g~~s~R  228 (457)
T Consensus       230 -----~~----------GsG~HiH~SL~d~~g~n~f~d~~~~~~~glS~~~~~fiaGlL~~~~~l~a~~~Pt~N---SYk  291 (435)
T TIGR03105       230 -----LT----------GNGCHFHLSLWDEDGRNLFADDSDPNGLGLSKLAYHFIGGILHHAPALCAVLAPTVN---SYK  291 (435)
T ss_pred             -----CC----------CCEEEEEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEECCCCCC---CCC
T ss_conf             -----99----------870038986775999760368987665554599999999999861323150147765---211


Q ss_pred             HH
Q ss_conf             88
Q gi|254781161|r  229 SE  230 (457)
Q Consensus       229 ~~  230 (457)
T Consensus       292 Rl  293 (435)
T TIGR03105       292 RL  293 (435)
T ss_pred             CC
T ss_conf             15