Query         gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 457
No_of_seqs    156 out of 980
Neff          8.6 
Searched_HMMs 13730
Date          Wed Jun  1 11:50:20 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781161.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1r8ga_ d.128.1.3 (A:) Carboxy 100.0       0       0  413.8  26.1  353   25-456     4-364 (368)
  2 d2d32a1 d.128.1.4 (A:1-518) Ga  99.6 2.6E-12 1.9E-16   90.7  24.0  385   10-442     1-457 (518)
  3 d1f52a2 d.128.1.1 (A:101-468)   97.6   0.002 1.5E-07   36.6  18.6   46   92-138   109-156 (368)
  4 d2bvca2 d.128.1.1 (A:105-478)   97.5  0.0022 1.6E-07   36.4  16.3   46   92-138   112-159 (374)
  5 d1ik7a_ a.77.1.2 (A:) Pelle de  46.1     2.1 0.00016   18.3   0.2   25  429-453     2-26  (52)
  6 d1tz9a_ c.1.15.6 (A:) Mannonat  10.5      34  0.0024   11.0   3.4   37  114-151    81-117 (353)
  7 d1d2za_ a.77.1.2 (A:) Pelle de   9.8      35  0.0026   10.9   4.7   36  419-454    42-77  (102)
  8 d1wh4a_ a.77.1.2 (A:) Interleu   9.7      36  0.0026   10.8   4.2   35  419-454    60-94  (127)
  9 d1em9a_ a.73.1.1 (A:) RSV caps   7.6      44  0.0032   10.3   2.3   27  356-382     9-35  (147)
 10 d2o4ta1 a.69.4.1 (A:16-105) Un   6.3      53  0.0039    9.8   4.1   79  364-449    10-90  (90)

No 1  
>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=413.83  Aligned_cols=353  Identities=14%  Similarity=0.126  Sum_probs=298.3

Q ss_pred             CCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCCCCCEEEC-CCCCEEEE
Q ss_conf             98720355867776538747657848711223499999975552488646127841023345688703413-54202420
Q gi|254781161|r   25 IKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLANPLSKAGISIE-PGGQLELS  103 (457)
Q Consensus        25 ~k~~~~~~IG~E~E~flvd~~~~~p~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~l~~~~~~~~it~e-p~~qlE~s  103 (457)
                      .+.++.++||+|+|+|+||+.+..++++.     .++|+.+.+..                  .+..|+.| +.+|||++
T Consensus         4 f~~~~~~tiGvE~E~~lvd~~~~~~~~~~-----~~ll~~~~~~~------------------~~~~i~~El~~~qiEl~   60 (368)
T d1r8ga_           4 FHVSEPFTLGIELEMQVVNPPGYDLSQDS-----SMLIDAVKNKI------------------TAGEVKHDITESMLELA   60 (368)
T ss_dssp             CCCCCTTCEEEEEEEEEEETTTTEECSCC-----HHHHTTTSSSC------------------SSSEEEECSSSSEEEEE
T ss_pred             CCCCCCCCEEEEEEEEEECCCCCCCCCCH-----HHHHHHHHCCC------------------CCCCCCCCCCCCEEEEC
T ss_conf             99999983489876543679987667757-----99999722224------------------68863104677669980


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             11010156778888887888787421038734210568788845420000013566666543211267888763134047
Q gi|254781161|r  104 TTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQV  183 (457)
Q Consensus       104 ~~~~~~~~e~~~~~~~~~~~l~~il~~~~~~~~~~g~~P~~~~~~~~~~~~~Ry~~m~~~~~~~g~~~~~mm~~tas~Qv  183 (457)
                      ++|+.++.++..++..++..+..++...++.++++|+||+..+.++.+++++||+.|..+++..+   .  |..+||+||
T Consensus        61 t~p~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~g~~P~~~~~~~~~~~~~ry~~~~~~~~~~~---~--~~~~~g~hv  135 (368)
T d1r8ga_          61 TDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLI---Q--QATVFGQHV  135 (368)
T ss_dssp             CCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGGG---C--SCCBCEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHH---H--HHHHCCCCE
T ss_conf             77779999999999999999999876558752445752126722155775089999987427078---8--876425603


Q ss_pred             EECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf             51478988999999999876567888743786558877874322688852027778865654457754199999998514
Q gi|254781161|r  184 SLDFSSEHDMATKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDI  263 (457)
Q Consensus       184 ~id~~~~~d~~~~~n~a~~l~P~llAL~aNSPf~~G~~~g~~s~R~~i~~~~d~~r~~~~~~~~~~~~~~e~y~~~~~~~  263 (457)
                      |+++.+++++++++|.++.++|+++|||||||||+|+++|+.|+|..+|++++..+   ++..|.++..|++|++.+++.
T Consensus       136 ~~~~~d~~~~~~~~~~~~~~~p~l~aL~anSP~~~G~~tg~~s~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~  212 (368)
T d1r8ga_         136 HVGCASGDDAIYLLHGLSRFVPHFIALSAASPYMQGTDTRFASSRPNIFSAFPDNG---PMPWVSNWQQFEALFRCLSYT  212 (368)
T ss_dssp             EEECSSHHHHHHHHHHHHTTHHHHHHHHCCBCEETTEECSCSBCGGGGGTTSTTCS---SCCCCSSHHHHHHHHHHHTTS
T ss_pred             EECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHCCCCCC---CCCCCCCHHHHHHHHHHHHHC
T ss_conf             11689999999999999998689988852866335867788677526775087656---543000112079999999855


Q ss_pred             CCEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCC-HHHHHHHHHHHH
Q ss_conf             5316305875326678887885126432101365546677531123456643335501211578888-667555588898
Q gi|254781161|r  264 PMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCLEMRGADSGR-LENIFAVAAFWT  342 (457)
Q Consensus       264 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~d~~~~~~~~f~~~r~~~~IEiR~~Ds~P-~~~~~a~aAf~~  342 (457)
                      +.+....                               +.|++.|+     ...++|||+|++|++| ..+.++.++|+.
T Consensus       213 ~~~~~~~-------------------------------~~~~~vRp-----~~~~~~iEiR~~D~~p~~~~~~~~aa~~~  256 (368)
T d1r8ga_         213 TMIDSIK-------------------------------DLHWDIRP-----SPHFGTVEVRVMDTPLTLSHAVNMAGLIQ  256 (368)
T ss_dssp             SSCSSGG-------------------------------GCCCSEEE-----ETTTTEEEEEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCC-------------------------------EEEEECCC-----CCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             6445677-------------------------------05631687-----64667421247899998899999756888


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             87653885443232023699999999999997631158668------830899999999999998985231245564588
Q gi|254781161|r  343 GILYDSSALQNADHLTSSWSFYDINKLNNTVPSKGMRSTVR------GQSLKDIAIQILTFAHQGLKNRSAKNHLQEDET  416 (457)
Q Consensus       343 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~aar~Gl~a~~~------~~~~~~l~~~ll~~A~~GL~~r~~~~~~~~dE~  416 (457)
                      +++..+..  .........+++.++.|+|+|+|+|+++.+.      ..++.+++.+|++.+++||.++|        ++
T Consensus       257 ~l~~~l~~--~~~~~~~~~~~~~~~~n~~~aar~Gl~~~l~~~~~~~~~~~~~~~~~Ll~~~~~~l~~lg--------~~  326 (368)
T d1r8ga_         257 ATAHWLLT--ERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIG--------AS  326 (368)
T ss_dssp             HHHHHHHH--HCCCCCCGGGGTTHHHHHHHHHHHGGGSEEECTTTCCEEEHHHHHHHHHHHSHHHHHHHT--------CH
T ss_pred             HHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCC--------CH
T ss_conf             78889986--178776404489999999988761444110006899676899999999999999999788--------98


Q ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHC
Q ss_conf             9999999999838985899999871022188899988767
Q gi|254781161|r  417 IFLKPLEKIIHNNQTTADEMLAAYHTRWGKSIDPCFEEYA  456 (457)
Q Consensus       417 ~yL~~l~~~i~~g~t~A~~~l~~y~~~~~~~i~~i~~~~~  456 (457)
                      .||+++++++++|+|+|+|+++.|++.  ++++.++.+++
T Consensus       327 ~~l~~l~~~v~~g~t~A~~lr~~~~~~--gsl~~~v~~~~  364 (368)
T d1r8ga_         327 SAIEALHRQVVSGLNEAQLMRDFVADG--GSLIGLVKKHC  364 (368)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTT--CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCC--CCHHHHHHHHH
T ss_conf             999999999982999999999999818--99999999999


No 2  
>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA {Escherichia coli [TaxId: 562]}
Probab=99.58  E-value=2.6e-12  Score=90.70  Aligned_cols=385  Identities=10%  Similarity=0.037  Sum_probs=197.9

Q ss_pred             HHCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCC
Q ss_conf             2148999999998379872035586777653874765-784871122349999997555248864612784102334568
Q gi|254781161|r   10 IVTSIDDLVQHIASGIKPQEEFRIGTEHESFIFSRAD-HRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLANPLS   88 (457)
Q Consensus        10 ~~~~~~~l~~~f~~g~k~~~~~~IG~E~E~flvd~~~-~~p~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~l~~~~~   88 (457)
                      |+.++.+...++++...-=...+-|+|-|..=|+.++ ++..|             +...+|              ..+.
T Consensus         1 ~~~~~~~~l~~l~~~~~~l~~~~~GiEkE~lRv~~~G~ls~~~-------------HP~~lG--------------s~lt   53 (518)
T d2d32a1           1 MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTG-------------HPEALG--------------SALT   53 (518)
T ss_dssp             CCCCCHHHHHHHHHCGGGGTTCEEEEEEEEEEECTTSCBCCSC-------------SCGGGC--------------CTTT
T ss_pred             CCHHHHHHHHHHHHCHHHHHCCCCCEEEEEEEECCCCCCCCCC-------------CCHHHC--------------CCCC
T ss_conf             9635999999988589988327646341100278897856899-------------973328--------------7532


Q ss_pred             CCCEEECCC-CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCHHHHHHH----H--H
Q ss_conf             870341354-20242011010156778888887888787421038734210568788845420000013566----6--6
Q gi|254781161|r   89 KAGISIEPG-GQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVL----M--K  161 (457)
Q Consensus        89 ~~~it~ep~-~qlE~s~~~~~~~~e~~~~~~~~~~~l~~il~~~~~~~~~~g~~P~~~~~~~~~~~~~Ry~~----m--~  161 (457)
                      ...||.+-. +|+|+.++|+.++.++...+......+..-+   +-..+....||..-..+. -+|...|.-    .  .
T Consensus        54 hp~IttDfsEs~lE~iTp~~~~~~~~l~~L~~lh~~~~~~l---~~E~LWp~SMP~~l~~~~-~I~iA~yg~sn~g~~k~  129 (518)
T d2d32a1          54 HKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNM---GDERMWPLSMPSYIAEGQ-DIELAQYGTSNTGRFKT  129 (518)
T ss_dssp             CSSEEECSBTTEEEEECCCBSCHHHHHHHHHHHHHHHHTSS---TTCEECCSSSCCCCSCGG-GSCBCCCCSSHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHH
T ss_conf             87988855678766178999999999999999999999508---876315778898889756-66642268754107899


Q ss_pred             HHHHHHHHHHHHHHHHHCCCEEEECCCCH--------------HH-----HHHHHHHHHHHHHHHHHHHCCCCCCC----
Q ss_conf             65432112678887631340475147898--------------89-----99999999876567888743786558----
Q gi|254781161|r  162 KYMPQVGTHGLDMMFRTCTTQVSLDFSSE--------------HD-----MATKLRVSFKLQPLATAIFASSPFAE----  218 (457)
Q Consensus       162 ~~~~~~g~~~~~mm~~tas~Qv~id~~~~--------------~d-----~~~~~n~a~~l~P~llAL~aNSPf~~----  218 (457)
                      .|=...+.+.=.+|..+||+|+|+-+++.              .+     .....+-..++.++++.||-.||...    
T Consensus       130 ~YR~gL~~rYG~~mq~isGiHyNfS~~~~~~~~~~~~~~~~~~~~f~~~~Yl~lirNf~R~~Wli~YLfGASP~~~~sf~  209 (518)
T d2d32a1         130 LYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKSGDISGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAISSSFL  209 (518)
T ss_dssp             HHHHHHHHHHCSGGGGCCEEEEEEECCHHHHHTCCT----HHHHHHHHHHHHHHHHHHHHHTTHHHHHHCCBCEEEGGGC
T ss_pred             HHHHHHHHHHCCHHCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC
T ss_conf             99999999706212022203533567699999998632650378887899999999899998999998057802202103


Q ss_pred             -CCCCCC---------------CCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--------EEECCCCCC
Q ss_conf             -877874---------------32268885202777886565445775419999999851453--------163058753
Q gi|254781161|r  219 -GRINGF---------------QSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDIPM--------YFILRKKEY  274 (457)
Q Consensus       219 -G~~~g~---------------~s~R~~i~~~~d~~r~~~~~~~~~~~~~~e~y~~~~~~~~~--------i~~~~~~~~  274 (457)
                       |++...               -|.|+--...+..    ......-+..+.+.|++-+...-.        |=...++.+
T Consensus       210 ~~~~~~~~~~~~~~~~~y~~~atSLRmS~~GY~n~----~q~~l~i~ynsl~~Yi~~l~~ai~~~~~~y~~ig~~~~g~~  285 (518)
T d2d32a1         210 QGKPTSLPFEKTESGMYYLPYATSLRLSDLGYTNK----SQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKR  285 (518)
T ss_dssp             ----CCCCCEECTTSEEECTTCSBGGGSTTSCCSC----BHHHHTCCSSCHHHHHHHHHHHHHCBCHHHHHHCSBSSSCB
T ss_pred             CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC----CHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCHH
T ss_conf             57866333321688763367753240467888854----13320665211188999999998598366788575778667


Q ss_pred             CCCCC--CCHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCCH---HHHHHHHHHHHHHHHHHH
Q ss_conf             26678--8878851264321013655466775311234566433355012115788886---675555888988765388
Q gi|254781161|r  275 YCCTD--ITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCLEMRGADSGRL---ENIFAVAAFWTGILYDSS  349 (457)
Q Consensus       275 ~~~~~--~~~~~~~~~~~~~~~~~~~~t~~d~~~~~~~~f~~~r~~~~IEiR~~Ds~P~---~~~~a~aAf~~gl~~~~~  349 (457)
                      .....  .-.+.-+-+.+.-....  .++..=-..+     ..+.=-|||+|++|--|+   .-...-+-|.-.++  +.
T Consensus       286 ~qln~~~LqiEnE~Ys~IRpKr~~--~~gerp~~aL-----~~~GIeYiEvR~lDlNPf~~~GIs~~~i~FLdlfL--ly  356 (518)
T d2d32a1         286 LQINSNVLQIENELYAPIRPKRVT--RSGESPSDAL-----LRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFM--VW  356 (518)
T ss_dssp             CCSCSBSCSSGGGSBCSEEEECCC--CTTCCHHHHH-----HHHCCCEEEEEEEECCTTSTTSCCHHHHHHHHHHH--HH
T ss_pred             HHHHCCCCCCHHHHCCCCCCCCCC--CCCCCHHHHH-----HHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH--HH
T ss_conf             665205110035422554666678--8985589999-----85687579886303774101285888989999999--99


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC----C----CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH---
Q ss_conf             544323202369999999999999763115866----8----83089999999999999898523124556458899---
Q gi|254781161|r  350 ALQNADHLTSSWSFYDINKLNNTVPSKGMRSTV----R----GQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIF---  418 (457)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~aar~Gl~a~~----~----~~~~~~l~~~ll~~A~~GL~~r~~~~~~~~dE~~y---  418 (457)
                      .+-.............+..|..+++..|.+-.+    .    ..++.+|+.++++--..--...+..   ..+ ..|   
T Consensus       357 cLl~~Sp~~~~~E~~~i~~N~~~Vv~~GR~p~L~L~~~~~~~~isl~e~a~~Il~eL~~iA~~LD~~---~~~-~~Y~~a  432 (518)
T d2d32a1         357 CALADAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSI---NGG-EAYQKV  432 (518)
T ss_dssp             HHHSCCCCCCHHHHHHHHHHHHHHHHHTTCTTCEECSTTSCCCEEHHHHHHHHHHHHHHHHHHHHHH---HCS-SHHHHH
T ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCC-HHHHHH
T ss_conf             9818985478999999999999999836798872013798662239999999999999999998404---587-699999


Q ss_pred             HHHHHHHHH-CCCCCHHHHHHHHHH
Q ss_conf             999999998-389858999998710
Q gi|254781161|r  419 LKPLEKIIH-NNQTTADEMLAAYHT  442 (457)
Q Consensus       419 L~~l~~~i~-~g~t~A~~~l~~y~~  442 (457)
                      |+...+++. ...|||.++++.-++
T Consensus       433 l~~~~~kl~dP~lTpSarIL~em~e  457 (518)
T d2d32a1         433 CDELVACFDNPDLTFSARILRSMID  457 (518)
T ss_dssp             HHHHHHHHHCGGGSHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             9999998609788968999999996


No 3  
>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=97.56  E-value=0.002  Score=36.64  Aligned_cols=46  Identities=20%  Similarity=0.168  Sum_probs=35.7

Q ss_pred             EEEC--CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
Q ss_conf             3413--5420242011010156778888887888787421038734210
Q gi|254781161|r   92 ISIE--PGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGM  138 (457)
Q Consensus        92 it~e--p~~qlE~s~~~~~~~~e~~~~~~~~~~~l~~il~~~~~~~~~~  138 (457)
                      +.-|  |.||.|+...+.. .-.++.....++..++.++.++|+....+
T Consensus       109 ~~~E~~~~gq~Ei~~~~~~-~l~aAD~~~~~k~~ik~iA~~~Gl~atFm  156 (368)
T d1f52a2         109 HHHEVATAGQNEVATRFNT-MTKKADEIQIYKYVVHNVAHRFGKTATFM  156 (368)
T ss_dssp             EEECSSTTTEEEEEECCEE-HHHHHHHHHHHHHHHHHHHHHTTCEEECC
T ss_pred             EECCCCCCCCEEECCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf             4223456784322078786-57788999999999999999743633474


No 4  
>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.53  E-value=0.0022  Score=36.42  Aligned_cols=46  Identities=20%  Similarity=0.140  Sum_probs=36.0

Q ss_pred             EEEC--CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC
Q ss_conf             3413--5420242011010156778888887888787421038734210
Q gi|254781161|r   92 ISIE--PGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGM  138 (457)
Q Consensus        92 it~e--p~~qlE~s~~~~~~~~e~~~~~~~~~~~l~~il~~~~~~~~~~  138 (457)
                      +.-|  +.||.|+...+.. .-.++.....++..+..++.++|+....+
T Consensus       112 ~~~E~~~~gQ~Ei~~~~~~-~l~aAD~~~~~k~~ik~vA~~~G~~atFm  159 (374)
T d2bvca2         112 GHHEVGSGGQAEINYQFNS-LLHAADDMQLYKYIIKNTAWQNGKTVTFM  159 (374)
T ss_dssp             EEECSSTTTEEEEEECCEE-HHHHHHHHHHHHHHHHHHHHHTTCEEECC
T ss_pred             EECCCCCCCEEEEECCCCH-HHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             3215666825887067630-66899999999999999998639747776


No 5  
>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=46.12  E-value=2.1  Score=18.27  Aligned_cols=25  Identities=12%  Similarity=0.464  Sum_probs=17.3

Q ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf             8985899999871022188899988
Q gi|254781161|r  429 NQTTADEMLAAYHTRWGKSIDPCFE  453 (457)
Q Consensus       429 g~t~A~~~l~~y~~~~~~~i~~i~~  453 (457)
                      |+||++.+|..|....++.|..+|.
T Consensus         2 g~SPt~elL~~Wg~q~NHTi~eLF~   26 (52)
T d1ik7a_           2 GRSASNEFLNIWGGQYNHTVQTLFA   26 (52)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHCCCCCCCHHHHHH
T ss_conf             9892899999857724541999999


No 6  
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus faecalis (Streptococcus faecalis) [TaxId: 1351]}
Probab=10.48  E-value=34  Score=11.00  Aligned_cols=37  Identities=14%  Similarity=0.179  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHC
Q ss_conf             88888878887874210387342105687888454200
Q gi|254781161|r  114 KGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPI  151 (457)
Q Consensus       114 ~~~~~~~~~~l~~il~~~~~~~~~~g~~P~~~~~~~~~  151 (457)
                      .+....+.. ....+.+.|+..++..++|...|.....
T Consensus        81 ~~~Ien~~~-slrnla~aGI~~icYNFmpv~dW~RT~l  117 (353)
T d1tz9a_          81 DHYIDNYRQ-TLRNLGKCGISLVCYSFKPIFGWAKTDL  117 (353)
T ss_dssp             HHHHHHHHH-HHHHHHHTTCCEEEECCCSSCSCCCSEE
T ss_pred             HHHHHHHHH-HHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf             999999999-9999997699879998145556135666


No 7  
>d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=9.82  E-value=35  Score=10.86  Aligned_cols=36  Identities=8%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             999999998389858999998710221888999887
Q gi|254781161|r  419 LKPLEKIIHNNQTTADEMLAAYHTRWGKSIDPCFEE  454 (457)
Q Consensus       419 L~~l~~~i~~g~t~A~~~l~~y~~~~~~~i~~i~~~  454 (457)
                      +..++.....+.+|++.+|..|....+..|+.+++-
T Consensus        42 I~~i~~~~~~~~Spt~~lL~~W~~~~~~Tv~~L~~~   77 (102)
T d1d2za_          42 VEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLFAL   77 (102)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHCCBHHHHHHH
T ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf             999986346799749999999983689819999999


No 8  
>d1wh4a_ a.77.1.2 (A:) Interleukin-1 receptor-associated kinase 4, IRAK4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.72  E-value=36  Score=10.83  Aligned_cols=35  Identities=11%  Similarity=0.296  Sum_probs=21.5

Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             999999998389858999998710221888999887
Q gi|254781161|r  419 LKPLEKIIHNNQTTADEMLAAYHTRWGKSIDPCFEE  454 (457)
Q Consensus       419 L~~l~~~i~~g~t~A~~~l~~y~~~~~~~i~~i~~~  454 (457)
                      +.-++.....|++|++.+|..|.+. +..|..+++-
T Consensus        60 i~~~e~~~~~~~Spt~~LL~~Wg~~-~~TV~~L~~~   94 (127)
T d1wh4a_          60 IRRFEALLQTGKSPTCELLFDWGTT-NCTVGDLVDL   94 (127)
T ss_dssp             HHHHHHHHTTTSCHHHHHHHHHHHH-CCBHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHC-CCCHHHHHHH
T ss_conf             9999987337998799999999886-9829999999


No 9  
>d1em9a_ a.73.1.1 (A:) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=7.61  E-value=44  Score=10.29  Aligned_cols=27  Identities=30%  Similarity=0.347  Sum_probs=20.1

Q ss_pred             HCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             202369999999999999763115866
Q gi|254781161|r  356 HLTSSWSFYDINKLNNTVPSKGMRSTV  382 (457)
Q Consensus       356 ~~~~~~~~~~~~~~~~~aar~Gl~a~~  382 (457)
                      ..+.++++..+++.+.++..||..+.+
T Consensus         9 ~~w~pl~~k~ikeL~~av~~yG~~spf   35 (147)
T d1em9a_           9 PAWTPLEPKLITRLADTVRTKGLRSPI   35 (147)
T ss_dssp             EEECCCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf             755688989999999999971989828


No 10 
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]}
Probab=6.25  E-value=53  Score=9.79  Aligned_cols=79  Identities=14%  Similarity=0.138  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             99999999997631-158668830899999999999998-9852312455645889999999999838985899999871
Q gi|254781161|r  364 YDINKLNNTVPSKG-MRSTVRGQSLKDIAIQILTFAHQG-LKNRSAKNHLQEDETIFLKPLEKIIHNNQTTADEMLAAYH  441 (457)
Q Consensus       364 ~~~~~~~~~aar~G-l~a~~~~~~~~~l~~~ll~~A~~G-L~~r~~~~~~~~dE~~yL~~l~~~i~~g~t~A~~~l~~y~  441 (457)
                      .+.+..+....+|= ..+.+.+..+-.++.+++.+..+| -.-..+.+..|.|-..|-+.|       ...+..+.++|+
T Consensus        10 ~dy~~~y~~i~~YL~~~~~~~~~~~~~il~dil~lleea~~~G~~v~ev~G~D~~~f~del-------i~~~k~~~dk~r   82 (90)
T d2o4ta1          10 KDYQIVYKEIQKYLFKVGPVELNEGIGLLSEILGFFEEGAAAGKGVLDVTGTDVAAFCDAL-------IGDSKTYADLYQ   82 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHCSCHHHHHHHT-------TSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHH-------HHHCHHHHHHHH
T ss_conf             9899999999999998189978889999999999999999849979999597999999999-------866530589999


Q ss_pred             HHHCCCHH
Q ss_conf             02218889
Q gi|254781161|r  442 TRWGKSID  449 (457)
Q Consensus       442 ~~~~~~i~  449 (457)
                      ++-+.+|+
T Consensus        83 ~~ln~~i~   90 (90)
T d2o4ta1          83 ESIQQHVD   90 (90)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHCC
T ss_conf             99874059


Done!