Query gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 457 No_of_seqs 156 out of 980 Neff 8.6 Searched_HMMs 13730 Date Wed Jun 1 11:50:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781161.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1r8ga_ d.128.1.3 (A:) Carboxy 100.0 0 0 413.8 26.1 353 25-456 4-364 (368) 2 d2d32a1 d.128.1.4 (A:1-518) Ga 99.6 2.6E-12 1.9E-16 90.7 24.0 385 10-442 1-457 (518) 3 d1f52a2 d.128.1.1 (A:101-468) 97.6 0.002 1.5E-07 36.6 18.6 46 92-138 109-156 (368) 4 d2bvca2 d.128.1.1 (A:105-478) 97.5 0.0022 1.6E-07 36.4 16.3 46 92-138 112-159 (374) 5 d1ik7a_ a.77.1.2 (A:) Pelle de 46.1 2.1 0.00016 18.3 0.2 25 429-453 2-26 (52) 6 d1tz9a_ c.1.15.6 (A:) Mannonat 10.5 34 0.0024 11.0 3.4 37 114-151 81-117 (353) 7 d1d2za_ a.77.1.2 (A:) Pelle de 9.8 35 0.0026 10.9 4.7 36 419-454 42-77 (102) 8 d1wh4a_ a.77.1.2 (A:) Interleu 9.7 36 0.0026 10.8 4.2 35 419-454 60-94 (127) 9 d1em9a_ a.73.1.1 (A:) RSV caps 7.6 44 0.0032 10.3 2.3 27 356-382 9-35 (147) 10 d2o4ta1 a.69.4.1 (A:16-105) Un 6.3 53 0.0039 9.8 4.1 79 364-449 10-90 (90) No 1 >d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} Probab=100.00 E-value=0 Score=413.83 Aligned_cols=353 Identities=14% Similarity=0.126 Sum_probs=298.3 Q ss_pred CCCCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCCCCCEEEC-CCCCEEEE Q ss_conf 98720355867776538747657848711223499999975552488646127841023345688703413-54202420 Q gi|254781161|r 25 IKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLANPLSKAGISIE-PGGQLELS 103 (457) Q Consensus 25 ~k~~~~~~IG~E~E~flvd~~~~~p~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~l~~~~~~~~it~e-p~~qlE~s 103 (457) .+.++.++||+|+|+|+||+.+..++++. .++|+.+.+.. .+..|+.| +.+|||++ T Consensus 4 f~~~~~~tiGvE~E~~lvd~~~~~~~~~~-----~~ll~~~~~~~------------------~~~~i~~El~~~qiEl~ 60 (368) T d1r8ga_ 4 FHVSEPFTLGIELEMQVVNPPGYDLSQDS-----SMLIDAVKNKI------------------TAGEVKHDITESMLELA 60 (368) T ss_dssp CCCCCTTCEEEEEEEEEEETTTTEECSCC-----HHHHTTTSSSC------------------SSSEEEECSSSSEEEEE T ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCH-----HHHHHHHHCCC------------------CCCCCCCCCCCCEEEEC T ss_conf 99999983489876543679987667757-----99999722224------------------68863104677669980 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE Q ss_conf 11010156778888887888787421038734210568788845420000013566666543211267888763134047 Q gi|254781161|r 104 TTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQV 183 (457) Q Consensus 104 ~~~~~~~~e~~~~~~~~~~~l~~il~~~~~~~~~~g~~P~~~~~~~~~~~~~Ry~~m~~~~~~~g~~~~~mm~~tas~Qv 183 (457) ++|+.++.++..++..++..+..++...++.++++|+||+..+.++.+++++||+.|..+++..+ . |..+||+|| T Consensus 61 t~p~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~g~~P~~~~~~~~~~~~~ry~~~~~~~~~~~---~--~~~~~g~hv 135 (368) T d1r8ga_ 61 TDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENFGYLI---Q--QATVFGQHV 135 (368) T ss_dssp CCSBSSHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CCGGGG---C--SCCBCEEEE T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHH---H--HHHHCCCCE T ss_conf 77779999999999999999999876558752445752126722155775089999987427078---8--876425603 Q ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC Q ss_conf 51478988999999999876567888743786558877874322688852027778865654457754199999998514 Q gi|254781161|r 184 SLDFSSEHDMATKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDI 263 (457) Q Consensus 184 ~id~~~~~d~~~~~n~a~~l~P~llAL~aNSPf~~G~~~g~~s~R~~i~~~~d~~r~~~~~~~~~~~~~~e~y~~~~~~~ 263 (457) |+++.+++++++++|.++.++|+++|||||||||+|+++|+.|+|..+|++++..+ ++..|.++..|++|++.+++. T Consensus 136 ~~~~~d~~~~~~~~~~~~~~~p~l~aL~anSP~~~G~~tg~~s~R~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 212 (368) T d1r8ga_ 136 HVGCASGDDAIYLLHGLSRFVPHFIALSAASPYMQGTDTRFASSRPNIFSAFPDNG---PMPWVSNWQQFEALFRCLSYT 212 (368) T ss_dssp EEECSSHHHHHHHHHHHHTTHHHHHHHHCCBCEETTEECSCSBCGGGGGTTSTTCS---SCCCCSSHHHHHHHHHHHTTS T ss_pred EECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHCCCCCC---CCCCCCCHHHHHHHHHHHHHC T ss_conf 11689999999999999998689988852866335867788677526775087656---543000112079999999855 Q ss_pred CCEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCC-HHHHHHHHHHHH Q ss_conf 5316305875326678887885126432101365546677531123456643335501211578888-667555588898 Q gi|254781161|r 264 PMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCLEMRGADSGR-LENIFAVAAFWT 342 (457) Q Consensus 264 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~d~~~~~~~~f~~~r~~~~IEiR~~Ds~P-~~~~~a~aAf~~ 342 (457) +.+.... +.|++.|+ ...++|||+|++|++| ..+.++.++|+. T Consensus 213 ~~~~~~~-------------------------------~~~~~vRp-----~~~~~~iEiR~~D~~p~~~~~~~~aa~~~ 256 (368) T d1r8ga_ 213 TMIDSIK-------------------------------DLHWDIRP-----SPHFGTVEVRVMDTPLTLSHAVNMAGLIQ 256 (368) T ss_dssp SSCSSGG-------------------------------GCCCSEEE-----ETTTTEEEEEEEECCSSHHHHHHHHHHHH T ss_pred CCCCCCC-------------------------------EEEEECCC-----CCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 6445677-------------------------------05631687-----64667421247899998899999756888 Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC------CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH Q ss_conf 87653885443232023699999999999997631158668------830899999999999998985231245564588 Q gi|254781161|r 343 GILYDSSALQNADHLTSSWSFYDINKLNNTVPSKGMRSTVR------GQSLKDIAIQILTFAHQGLKNRSAKNHLQEDET 416 (457) Q Consensus 343 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~aar~Gl~a~~~------~~~~~~l~~~ll~~A~~GL~~r~~~~~~~~dE~ 416 (457) +++..+.. .........+++.++.|+|+|+|+|+++.+. ..++.+++.+|++.+++||.++| ++ T Consensus 257 ~l~~~l~~--~~~~~~~~~~~~~~~~n~~~aar~Gl~~~l~~~~~~~~~~~~~~~~~Ll~~~~~~l~~lg--------~~ 326 (368) T d1r8ga_ 257 ATAHWLLT--ERPFKHQEKDYLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIG--------AS 326 (368) T ss_dssp HHHHHHHH--HCCCCCCGGGGTTHHHHHHHHHHHGGGSEEECTTTCCEEEHHHHHHHHHHHSHHHHHHHT--------CH T ss_pred HHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCC--------CH T ss_conf 78889986--178776404489999999988761444110006899676899999999999999999788--------98 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHC Q ss_conf 9999999999838985899999871022188899988767 Q gi|254781161|r 417 IFLKPLEKIIHNNQTTADEMLAAYHTRWGKSIDPCFEEYA 456 (457) Q Consensus 417 ~yL~~l~~~i~~g~t~A~~~l~~y~~~~~~~i~~i~~~~~ 456 (457) .||+++++++++|+|+|+|+++.|++. ++++.++.+++ T Consensus 327 ~~l~~l~~~v~~g~t~A~~lr~~~~~~--gsl~~~v~~~~ 364 (368) T d1r8ga_ 327 SAIEALHRQVVSGLNEAQLMRDFVADG--GSLIGLVKKHC 364 (368) T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTT--CCHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC--CCHHHHHHHHH T ss_conf 999999999982999999999999818--99999999999 No 2 >d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA {Escherichia coli [TaxId: 562]} Probab=99.58 E-value=2.6e-12 Score=90.70 Aligned_cols=385 Identities=10% Similarity=0.037 Sum_probs=197.9 Q ss_pred HHCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCC-CCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCEECCCCCCC Q ss_conf 2148999999998379872035586777653874765-784871122349999997555248864612784102334568 Q gi|254781161|r 10 IVTSIDDLVQHIASGIKPQEEFRIGTEHESFIFSRAD-HRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLANPLS 88 (457) Q Consensus 10 ~~~~~~~l~~~f~~g~k~~~~~~IG~E~E~flvd~~~-~~p~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~l~~~~~ 88 (457) |+.++.+...++++...-=...+-|+|-|..=|+.++ ++..| +...+| ..+. T Consensus 1 ~~~~~~~~l~~l~~~~~~l~~~~~GiEkE~lRv~~~G~ls~~~-------------HP~~lG--------------s~lt 53 (518) T d2d32a1 1 MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTG-------------HPEALG--------------SALT 53 (518) T ss_dssp CCCCCHHHHHHHHHCGGGGTTCEEEEEEEEEEECTTSCBCCSC-------------SCGGGC--------------CTTT T ss_pred CCHHHHHHHHHHHHCHHHHHCCCCCEEEEEEEECCCCCCCCCC-------------CCHHHC--------------CCCC T ss_conf 9635999999988589988327646341100278897856899-------------973328--------------7532 Q ss_pred CCCEEECCC-CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHCCHHHHHHH----H--H Q ss_conf 870341354-20242011010156778888887888787421038734210568788845420000013566----6--6 Q gi|254781161|r 89 KAGISIEPG-GQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVL----M--K 161 (457) Q Consensus 89 ~~~it~ep~-~qlE~s~~~~~~~~e~~~~~~~~~~~l~~il~~~~~~~~~~g~~P~~~~~~~~~~~~~Ry~~----m--~ 161 (457) ...||.+-. +|+|+.++|+.++.++...+......+..-+ +-..+....||..-..+. -+|...|.- . . T Consensus 54 hp~IttDfsEs~lE~iTp~~~~~~~~l~~L~~lh~~~~~~l---~~E~LWp~SMP~~l~~~~-~I~iA~yg~sn~g~~k~ 129 (518) T d2d32a1 54 HKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNM---GDERMWPLSMPSYIAEGQ-DIELAQYGTSNTGRFKT 129 (518) T ss_dssp CSSEEECSBTTEEEEECCCBSCHHHHHHHHHHHHHHHHTSS---TTCEECCSSSCCCCSCGG-GSCBCCCCSSHHHHHHH T ss_pred CCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHH T ss_conf 87988855678766178999999999999999999999508---876315778898889756-66642268754107899 Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCH--------------HH-----HHHHHHHHHHHHHHHHHHHCCCCCCC---- Q ss_conf 65432112678887631340475147898--------------89-----99999999876567888743786558---- Q gi|254781161|r 162 KYMPQVGTHGLDMMFRTCTTQVSLDFSSE--------------HD-----MATKLRVSFKLQPLATAIFASSPFAE---- 218 (457) Q Consensus 162 ~~~~~~g~~~~~mm~~tas~Qv~id~~~~--------------~d-----~~~~~n~a~~l~P~llAL~aNSPf~~---- 218 (457) .|=...+.+.=.+|..+||+|+|+-+++. .+ .....+-..++.++++.||-.||... T Consensus 130 ~YR~gL~~rYG~~mq~isGiHyNfS~~~~~~~~~~~~~~~~~~~~f~~~~Yl~lirNf~R~~Wli~YLfGASP~~~~sf~ 209 (518) T d2d32a1 130 LYREGLKNRYGALMQTISGVHYNFSLPMAFWQAKSGDISGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAISSSFL 209 (518) T ss_dssp HHHHHHHHHHCSGGGGCCEEEEEEECCHHHHHTCCT----HHHHHHHHHHHHHHHHHHHHHTTHHHHHHCCBCEEEGGGC T ss_pred HHHHHHHHHHCCHHCCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCC T ss_conf 99999999706212022203533567699999998632650378887899999999899998999998057802202103 Q ss_pred -CCCCCC---------------CCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--------EEECCCCCC Q ss_conf -877874---------------32268885202777886565445775419999999851453--------163058753 Q gi|254781161|r 219 -GRINGF---------------QSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDIPM--------YFILRKKEY 274 (457) Q Consensus 219 -G~~~g~---------------~s~R~~i~~~~d~~r~~~~~~~~~~~~~~e~y~~~~~~~~~--------i~~~~~~~~ 274 (457) |++... -|.|+--...+.. ......-+..+.+.|++-+...-. |=...++.+ T Consensus 210 ~~~~~~~~~~~~~~~~~y~~~atSLRmS~~GY~n~----~q~~l~i~ynsl~~Yi~~l~~ai~~~~~~y~~ig~~~~g~~ 285 (518) T d2d32a1 210 QGKPTSLPFEKTESGMYYLPYATSLRLSDLGYTNK----SQSNLGITFNDLYEYVAGLKQAIKTPSEEYAKIGIEKDGKR 285 (518) T ss_dssp ----CCCCCEECTTSEEECTTCSBGGGSTTSCCSC----BHHHHTCCSSCHHHHHHHHHHHHHCBCHHHHHHCSBSSSCB T ss_pred CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC----CHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCHH T ss_conf 57866333321688763367753240467888854----13320665211188999999998598366788575778667 Q ss_pred CCCCC--CCHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCEEECCCCCCCH---HHHHHHHHHHHHHHHHHH Q ss_conf 26678--8878851264321013655466775311234566433355012115788886---675555888988765388 Q gi|254781161|r 275 YCCTD--ITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCLEMRGADSGRL---ENIFAVAAFWTGILYDSS 349 (457) Q Consensus 275 ~~~~~--~~~~~~~~~~~~~~~~~~~~t~~d~~~~~~~~f~~~r~~~~IEiR~~Ds~P~---~~~~a~aAf~~gl~~~~~ 349 (457) ..... .-.+.-+-+.+.-.... .++..=-..+ ..+.=-|||+|++|--|+ .-...-+-|.-.++ +. T Consensus 286 ~qln~~~LqiEnE~Ys~IRpKr~~--~~gerp~~aL-----~~~GIeYiEvR~lDlNPf~~~GIs~~~i~FLdlfL--ly 356 (518) T d2d32a1 286 LQINSNVLQIENELYAPIRPKRVT--RSGESPSDAL-----LRGGIEYIEVRSLDINPFSPIGVDEQQVRFLDLFM--VW 356 (518) T ss_dssp CCSCSBSCSSGGGSBCSEEEECCC--CTTCCHHHHH-----HHHCCCEEEEEEEECCTTSTTSCCHHHHHHHHHHH--HH T ss_pred HHHHCCCCCCHHHHCCCCCCCCCC--CCCCCHHHHH-----HHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH--HH T ss_conf 665205110035422554666678--8985589999-----85687579886303774101285888989999999--99 Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC----C----CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH--- Q ss_conf 544323202369999999999999763115866----8----83089999999999999898523124556458899--- Q gi|254781161|r 350 ALQNADHLTSSWSFYDINKLNNTVPSKGMRSTV----R----GQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIF--- 418 (457) Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~aar~Gl~a~~----~----~~~~~~l~~~ll~~A~~GL~~r~~~~~~~~dE~~y--- 418 (457) .+-.............+..|..+++..|.+-.+ . ..++.+|+.++++--..--...+.. ..+ ..| T Consensus 357 cLl~~Sp~~~~~E~~~i~~N~~~Vv~~GR~p~L~L~~~~~~~~isl~e~a~~Il~eL~~iA~~LD~~---~~~-~~Y~~a 432 (518) T d2d32a1 357 CALADAPEMSSSELACTRVNWNRVILEGRKPGLTLGIGCETAQFPLPQVGKDLFRDLKRVAQTLDSI---NGG-EAYQKV 432 (518) T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHHTTCTTCEECSTTSCCCEEHHHHHHHHHHHHHHHHHHHHHH---HCS-SHHHHH T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC---CCC-HHHHHH T ss_conf 9818985478999999999999999836798872013798662239999999999999999998404---587-699999 Q ss_pred HHHHHHHHH-CCCCCHHHHHHHHHH Q ss_conf 999999998-389858999998710 Q gi|254781161|r 419 LKPLEKIIH-NNQTTADEMLAAYHT 442 (457) Q Consensus 419 L~~l~~~i~-~g~t~A~~~l~~y~~ 442 (457) |+...+++. ...|||.++++.-++ T Consensus 433 l~~~~~kl~dP~lTpSarIL~em~e 457 (518) T d2d32a1 433 CDELVACFDNPDLTFSARILRSMID 457 (518) T ss_dssp HHHHHHHHHCGGGSHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 9999998609788968999999996 No 3 >d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Probab=97.56 E-value=0.002 Score=36.64 Aligned_cols=46 Identities=20% Similarity=0.168 Sum_probs=35.7 Q ss_pred EEEC--CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC Q ss_conf 3413--5420242011010156778888887888787421038734210 Q gi|254781161|r 92 ISIE--PGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGM 138 (457) Q Consensus 92 it~e--p~~qlE~s~~~~~~~~e~~~~~~~~~~~l~~il~~~~~~~~~~ 138 (457) +.-| |.||.|+...+.. .-.++.....++..++.++.++|+....+ T Consensus 109 ~~~E~~~~gq~Ei~~~~~~-~l~aAD~~~~~k~~ik~iA~~~Gl~atFm 156 (368) T d1f52a2 109 HHHEVATAGQNEVATRFNT-MTKKADEIQIYKYVVHNVAHRFGKTATFM 156 (368) T ss_dssp EEECSSTTTEEEEEECCEE-HHHHHHHHHHHHHHHHHHHHHTTCEEECC T ss_pred EECCCCCCCCEEECCCCCC-HHHHHHHHHHHHHHHHHHHHHHCCEEEEE T ss_conf 4223456784322078786-57788999999999999999743633474 No 4 >d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Probab=97.53 E-value=0.0022 Score=36.42 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=36.0 Q ss_pred EEEC--CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECC Q ss_conf 3413--5420242011010156778888887888787421038734210 Q gi|254781161|r 92 ISIE--PGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGM 138 (457) Q Consensus 92 it~e--p~~qlE~s~~~~~~~~e~~~~~~~~~~~l~~il~~~~~~~~~~ 138 (457) +.-| +.||.|+...+.. .-.++.....++..+..++.++|+....+ T Consensus 112 ~~~E~~~~gQ~Ei~~~~~~-~l~aAD~~~~~k~~ik~vA~~~G~~atFm 159 (374) T d2bvca2 112 GHHEVGSGGQAEINYQFNS-LLHAADDMQLYKYIIKNTAWQNGKTVTFM 159 (374) T ss_dssp EEECSSTTTEEEEEECCEE-HHHHHHHHHHHHHHHHHHHHHTTCEEECC T ss_pred EECCCCCCCEEEEECCCCH-HHHHHHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 3215666825887067630-66899999999999999998639747776 No 5 >d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]} Probab=46.12 E-value=2.1 Score=18.27 Aligned_cols=25 Identities=12% Similarity=0.464 Sum_probs=17.3 Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHH Q ss_conf 8985899999871022188899988 Q gi|254781161|r 429 NQTTADEMLAAYHTRWGKSIDPCFE 453 (457) Q Consensus 429 g~t~A~~~l~~y~~~~~~~i~~i~~ 453 (457) |+||++.+|..|....++.|..+|. T Consensus 2 g~SPt~elL~~Wg~q~NHTi~eLF~ 26 (52) T d1ik7a_ 2 GRSASNEFLNIWGGQYNHTVQTLFA 26 (52) T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHCCCCCCCHHHHHH T ss_conf 9892899999857724541999999 No 6 >d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus faecalis (Streptococcus faecalis) [TaxId: 1351]} Probab=10.48 E-value=34 Score=11.00 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=22.2 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHC Q ss_conf 88888878887874210387342105687888454200 Q gi|254781161|r 114 KGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPI 151 (457) Q Consensus 114 ~~~~~~~~~~l~~il~~~~~~~~~~g~~P~~~~~~~~~ 151 (457) .+....+.. ....+.+.|+..++..++|...|..... T Consensus 81 ~~~Ien~~~-slrnla~aGI~~icYNFmpv~dW~RT~l 117 (353) T d1tz9a_ 81 DHYIDNYRQ-TLRNLGKCGISLVCYSFKPIFGWAKTDL 117 (353) T ss_dssp HHHHHHHHH-HHHHHHHTTCCEEEECCCSSCSCCCSEE T ss_pred HHHHHHHHH-HHHHHHHCCCCEEEEEECCCCCCCCCCC T ss_conf 999999999-9999997699879998145556135666 No 7 >d1d2za_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]} Probab=9.82 E-value=35 Score=10.86 Aligned_cols=36 Identities=8% Similarity=0.328 Sum_probs=21.6 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 999999998389858999998710221888999887 Q gi|254781161|r 419 LKPLEKIIHNNQTTADEMLAAYHTRWGKSIDPCFEE 454 (457) Q Consensus 419 L~~l~~~i~~g~t~A~~~l~~y~~~~~~~i~~i~~~ 454 (457) +..++.....+.+|++.+|..|....+..|+.+++- T Consensus 42 I~~i~~~~~~~~Spt~~lL~~W~~~~~~Tv~~L~~~ 77 (102) T d1d2za_ 42 VEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLFAL 77 (102) T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHCCBHHHHHHH T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 999986346799749999999983689819999999 No 8 >d1wh4a_ a.77.1.2 (A:) Interleukin-1 receptor-associated kinase 4, IRAK4 {Mouse (Mus musculus) [TaxId: 10090]} Probab=9.72 E-value=36 Score=10.83 Aligned_cols=35 Identities=11% Similarity=0.296 Sum_probs=21.5 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 999999998389858999998710221888999887 Q gi|254781161|r 419 LKPLEKIIHNNQTTADEMLAAYHTRWGKSIDPCFEE 454 (457) Q Consensus 419 L~~l~~~i~~g~t~A~~~l~~y~~~~~~~i~~i~~~ 454 (457) +.-++.....|++|++.+|..|.+. +..|..+++- T Consensus 60 i~~~e~~~~~~~Spt~~LL~~Wg~~-~~TV~~L~~~ 94 (127) T d1wh4a_ 60 IRRFEALLQTGKSPTCELLFDWGTT-NCTVGDLVDL 94 (127) T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHH-CCBHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHC-CCCHHHHHHH T ss_conf 9999987337998799999999886-9829999999 No 9 >d1em9a_ a.73.1.1 (A:) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]} Probab=7.61 E-value=44 Score=10.29 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=20.1 Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCCC Q ss_conf 202369999999999999763115866 Q gi|254781161|r 356 HLTSSWSFYDINKLNNTVPSKGMRSTV 382 (457) Q Consensus 356 ~~~~~~~~~~~~~~~~~aar~Gl~a~~ 382 (457) ..+.++++..+++.+.++..||..+.+ T Consensus 9 ~~w~pl~~k~ikeL~~av~~yG~~spf 35 (147) T d1em9a_ 9 PAWTPLEPKLITRLADTVRTKGLRSPI 35 (147) T ss_dssp EEECCCCHHHHHHHHHHHHHHCTTCHH T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCH T ss_conf 755688989999999999971989828 No 10 >d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]} Probab=6.25 E-value=53 Score=9.79 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 99999999997631-158668830899999999999998-9852312455645889999999999838985899999871 Q gi|254781161|r 364 YDINKLNNTVPSKG-MRSTVRGQSLKDIAIQILTFAHQG-LKNRSAKNHLQEDETIFLKPLEKIIHNNQTTADEMLAAYH 441 (457) Q Consensus 364 ~~~~~~~~~aar~G-l~a~~~~~~~~~l~~~ll~~A~~G-L~~r~~~~~~~~dE~~yL~~l~~~i~~g~t~A~~~l~~y~ 441 (457) .+.+..+....+|= ..+.+.+..+-.++.+++.+..+| -.-..+.+..|.|-..|-+.| ...+..+.++|+ T Consensus 10 ~dy~~~y~~i~~YL~~~~~~~~~~~~~il~dil~lleea~~~G~~v~ev~G~D~~~f~del-------i~~~k~~~dk~r 82 (90) T d2o4ta1 10 KDYQIVYKEIQKYLFKVGPVELNEGIGLLSEILGFFEEGAAAGKGVLDVTGTDVAAFCDAL-------IGDSKTYADLYQ 82 (90) T ss_dssp HHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHCSCHHHHHHHT-------TSCSHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHH-------HHHCHHHHHHHH T ss_conf 9899999999999998189978889999999999999999849979999597999999999-------866530589999 Q ss_pred HHHCCCHH Q ss_conf 02218889 Q gi|254781161|r 442 TRWGKSID 449 (457) Q Consensus 442 ~~~~~~i~ 449 (457) ++-+.+|+ T Consensus 83 ~~ln~~i~ 90 (90) T d2o4ta1 83 ESIQQHVD 90 (90) T ss_dssp HHHHHHTC T ss_pred HHHHHHCC T ss_conf 99874059 Done!