RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase [Candidatus Liberibacter asiaticus str. psy62] (457 letters) >2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, redox regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* (A:1-422) Length = 422 Score = 274 bits (702), Expect = 1e-74 Identities = 189/422 (44%), Positives = 259/422 (61%), Gaps = 12/422 (2%) Query: 7 ANTIVTSIDDLVQHIASGIKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQ 66 T + +DL+ ++ASG K +E++RIGTEHE F F RP+ YD I +L +I Sbjct: 11 VATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQ---IAELLNSIA 67 Query: 67 KKLAWKEIMDKGNIIGLANPLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGYIQILKE 126 ++ W+++M+ IIGL IS+EPGGQ ELS L+ +HQ E+ ++ +K Sbjct: 68 ERFEWEKVMEGDKIIGLKQGKQ--SISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKA 125 Query: 127 ITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLD 186 + + + +G LGMGF PKW+ +++P MPK RY +M+ YMP+VG+ GLDMM RTCT QV+LD Sbjct: 126 VAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTVQVNLD 185 Query: 187 FSSEHDMATKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFI 246 FSSE DM K R LQP+ATA+FA+SPF EG+ NGF S RS IW TD DRT +LPF+ Sbjct: 186 FSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTGMLPFV 245 Query: 247 LRDNSNFEHYAQWALDIPMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWEN 306 D+ FE Y +ALD+PMYF R +Y CT +TFRQF+ G L E PT DWEN Sbjct: 246 FDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGE-LPTYNDWEN 304 Query: 307 HLSTLFPAVRLRNCLEMRGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDI 366 HL+T+FP VRL+ +EMRGAD G + A+ AFW G+LYD LQ+ LT+ W+ + Sbjct: 305 HLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWTPAER 364 Query: 367 NKLNNTVPSKGMRSTVRGQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKII 426 L N VP G+++ R LK +A +L A GL+ E FL + +++ Sbjct: 365 EMLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLE------RRGYKEVGFLNAVTEVV 418 Query: 427 HN 428 Sbjct: 419 RT 420 >1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} (A:) Length = 372 Score = 227 bits (580), Expect = 2e-60 Identities = 51/435 (11%), Positives = 114/435 (26%), Gaps = 73/435 (16%) Query: 25 IKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLA 84 E F +G E E + + + ++ A + Sbjct: 6 FHVSEPFTLGIELEXQVVNPPGYDLSQD-----SSXLIDA------------------VK 42 Query: 85 NPLSKAGISIEPGGQ-LELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPK 143 N ++ + + LEL+T ++++Q G+ +++ + + L I G G +P Sbjct: 43 NKITAGEVKHDITESXLELATDVCRDINQAAGQFSAXQKVVLQAATDHHLEICGGGTHPF 102 Query: 144 WKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHDMATKLRVSFKL 203 K + RY + + V + +S D L + Sbjct: 103 QKWQRQEVCDNERYQRTLENFGYLI-----QQATVFGQHVHVGCASGDDAIYLLHGLSRF 157 Query: 204 QPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDI 263 P A+ A+SP+ +G F S R I+ + + + FE + Sbjct: 158 VPHFIALSAASPYXQGTDTRFASSRPNIFSAFPDNG---PXPWVSNWQQFEALFRCLSYT 214 Query: 264 PMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCLEM 323 ++ ++ + + R+ + TL L Sbjct: 215 TXIDSIK-DLHWDIRPSPHFGTV----EVRVXDTPLTLSHA--VNXAGLIQATAHWLLTE 267 Query: 324 RGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDINKLNNTVPSKGMRSTVR 383 R + + + Y + H T Sbjct: 268 RPFKHQEKDYLLYKFNRFQACRYGLEGVITDPH------------------------TGD 303 Query: 384 GQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKIIHNNQTTADEMLAAY--H 441 + L + +++L + ++ L + + + A Sbjct: 304 RRPLTEDTLRLLEKIAPSAHKI--------GASSAIEALHRQVVSGLNEAQLXRDFVADG 355 Query: 442 TRWGKSIDPCFEEYA 456 + E +A Sbjct: 356 GSLIGLVKKHCEIWA 370 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 27.4 bits (60), Expect = 4.0 Identities = 11/130 (8%), Positives = 34/130 (26%), Gaps = 31/130 (23%) Query: 58 IVTILQAIQKKLAWKEIMDKGNIIGLANPLS--------KAGISIEPGGQLELSTTTLQN 109 + A Q E+ + A I I G + + Sbjct: 196 APSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTV------MDL 249 Query: 110 VHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLM--------- 160 + + + + + + D + G + + +P++ +++ Sbjct: 250 MKRRQLDARDIKVFVLDE---ADNMLDQQGLGDQSMRIKHL-LPRNTQIVLFSATFSERV 305 Query: 161 ----KKYMPQ 166 +++ P Sbjct: 306 EKYAERFAPN 315 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.135 0.413 Gapped Lambda K H 0.267 0.0600 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,523,707 Number of extensions: 159290 Number of successful extensions: 301 Number of sequences better than 10.0: 1 Number of HSP's gapped: 296 Number of HSP's successfully gapped: 8 Length of query: 457 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 366 Effective length of database: 1,879,794 Effective search space: 688004604 Effective search space used: 688004604 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (25.6 bits)