RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase [Candidatus Liberibacter asiaticus str. psy62] (457 letters) >2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, redox regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* Length = 449 Score = 397 bits (1022), Expect = e-111 Identities = 202/443 (45%), Positives = 277/443 (62%), Gaps = 12/443 (2%) Query: 15 DDLVQHIASGIKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEI 74 +DL+ ++ASG K +E++RIGTEHE F F RP+ YD I +L +I ++ W+++ Sbjct: 19 EDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQ---IAELLNSIAERFEWEKV 75 Query: 75 MDKGNIIGLANPLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLG 134 M+ IIGL K IS+EPGGQ ELS L+ +HQ E+ ++ +K + + + +G Sbjct: 76 MEGDKIIGLKQG--KQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIG 133 Query: 135 ILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHDMA 194 LGMGF PKW+ +++P MPK RY +M+ YMP+VG+ GLDMM RTCT QV+LDFSSE DM Sbjct: 134 FLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTVQVNLDFSSEADMI 193 Query: 195 TKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFE 254 K R LQP+ATA+FA+SPF EG+ NGF S RS IW TD DRT +LPF+ D+ FE Sbjct: 194 RKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTGMLPFVFDDSFGFE 253 Query: 255 HYAQWALDIPMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPA 314 Y +ALD+PMYF R +Y CT +TFRQF+ G L E PT DWENHL+T+FP Sbjct: 254 QYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGEL-PTYNDWENHLTTIFPE 312 Query: 315 VRLRNCLEMRGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDINKLNNTVP 374 VRL+ +EMRGAD G + A+ AFW G+LYD LQ+ LT+ W+ + L N VP Sbjct: 313 VRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWTPAEREMLRNKVP 372 Query: 375 SKGMRSTVRGQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKIIHNNQTTAD 434 G+++ R LK +A +L A GL+ R E FL + +++ T A+ Sbjct: 373 VTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGY------KEVGFLNAVTEVVRTGVTPAE 426 Query: 435 EMLAAYHTRWGKSIDPCFEEYAY 457 +L Y+ WG+S+DP F+E Y Sbjct: 427 NLLEMYNGEWGQSVDPVFQELLY 449 >1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A Length = 372 Score = 182 bits (462), Expect = 2e-46 Identities = 53/432 (12%), Positives = 117/432 (27%), Gaps = 73/432 (16%) Query: 26 KPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVTILQAIQKKLAWKEIMDKGNIIGLAN 85 E F +G E E + + + ++ A + N Sbjct: 7 HVSEPFTLGIELEMQVVNPPGYDLSQDSSM-----LIDA------------------VKN 43 Query: 86 PLSKAGISIE-PGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKW 144 ++ + + LEL+T ++++Q G+ +++ + + L I G G +P Sbjct: 44 KITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQ 103 Query: 145 KLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHDMATKLRVSFKLQ 204 K + RY + + V + +S D L + Sbjct: 104 KWQRQEVCDNERYQRTLENFGYLI-----QQATVFGQHVHVGCASGDDAIYLLHGLSRFV 158 Query: 205 PLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDIP 264 P A+ A+SP+ +G F S R I+ + + FE + Sbjct: 159 PHFIALSAASPYMQGTDTRFASSRPNIFSAF---PDNGPMPWVSNWQQFEALFRCLSYTT 215 Query: 265 MYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPTLEDWENHLSTLFPAVRLRNCLEMR 324 M ++ ++ + + R+ + TL L R Sbjct: 216 MIDSIKDL-HWDIRPSPHFGTV----EVRVMDTPLTLSHA--VNMAGLIQATAHWLLTER 268 Query: 325 GADSGRLENIFAVAAFWTGILYDSSALQNADHLTSSWSFYDINKLNNTVPSKGMRSTVRG 384 + + + Y + H T Sbjct: 269 PFKHQEKDYLLYKFNRFQACRYGLEGVITDPH------------------------TGDR 304 Query: 385 QSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLKPLEKIIHNNQTTADEMLAAYHTRW 444 + L + +++L + ++ L + + + A M Sbjct: 305 RPLTEDTLRLLEKIAPSAHKI--------GASSAIEALHRQVVSGLNEAQLMRDFVAD-- 354 Query: 445 GKSIDPCFEEYA 456 G S+ +++ Sbjct: 355 GGSLIGLVKKHC 366 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.2 bits (104), Expect = 7e-05 Identities = 63/448 (14%), Positives = 120/448 (26%), Gaps = 201/448 (44%) Query: 86 PLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGYIQILKEITQNLDLGILGMGFNPKWK 145 PL+ + S+E L + T + Q++ + + +IL E T+ Sbjct: 8 PLTLSHGSLEHV--LLVPTASFFIASQLQEQ---FNKILPEPTEGFAA------------ 50 Query: 146 LDEMPIMPK---SRYV--LMKKYMPQVGTHGLDMMFRTCTTQVSLD-FSSE-------HD 192 D+ P P +++ + P ++ + L F + H Sbjct: 51 -DDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL------NLCLTEFENCYLEGNDIHA 103 Query: 193 MATKLRVSFKLQPLA---------TAIFAS-SPFAEGRINGFQSWRSEIWRHTDSDRTEI 242 +A KL + TA + PF + S ++R ++ Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS-------NSALFRAVGEGNAQL 156 Query: 243 L------------------------PFI--------------LRDNSNFE-HYAQWALDI 263 + + +R + E + Q L+I Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLNI 215 Query: 264 PMYFILRKKE------Y------------------YCCT----DIT---FRQFMNGALKG 292 + L Y Y T T R ++ GA G Sbjct: 216 LEW--LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA-TG 272 Query: 293 RIKEWHP----------TLEDWENHLSTLFPAVRLRNCLEMRGADSGRLENIFAVAAFWT 342 H + WE + F +VR + + L F+ Sbjct: 273 -----HSQGLVTAVAIAETDSWE----SFFVSVR--KAITV-------L--------FFI 306 Query: 343 GI----------LYDSSALQNA-DHLTSSWSFYDINKLNNTVPSKGMRSTVRGQSLKDIA 391 G+ L S L+++ ++ N VPS M S + + + Sbjct: 307 GVRCYEAYPNTSL-PPSILEDSLEN-------------NEGVPSP-MLS-ISNLTQE--Q 348 Query: 392 IQILTFAHQGLKNRSAKNHLQEDETIFL 419 +Q + N HL + + + Sbjct: 349 VQ----DYVNKTNS----HLPAGKQVEI 368 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.9 bits (71), Expect = 0.28 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 6/29 (20%) Query: 190 EHDMATKLRVSFKL-----QPLATAIFAS 213 E KL+ S KL P A AI A+ Sbjct: 18 EKQALKKLQASLKLYADDSAP-ALAIKAT 45 Score = 31.5 bits (70), Expect = 0.38 Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 9/37 (24%) Query: 347 DSSALQNADHLTSSWSFY-DINKLNNTVPSKGMRSTV 382 + AL+ L +S Y D ++ P+ +++T+ Sbjct: 18 EKQALKK---LQASLKLYAD-----DSAPALAIKATM 46 >2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A* Length = 723 Score = 27.4 bits (59), Expect = 7.1 Identities = 19/158 (12%), Positives = 41/158 (25%), Gaps = 1/158 (0%) Query: 157 YVLMKKYMPQVGTHGLDMMFRTCTTQVSLDFSSEHDMATKLRVSFKLQPLATAIFASSPF 216 YV K + GT+ +D R C + + + + S Sbjct: 118 YVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTYADIDQATCFFIIGSNT 177 Query: 217 AEGRINGFQSWRSEIWRHTDSDRTEILPFILRDNSNFEHYAQWALDIPMYFILRKKEYYC 276 +E F+ P + + + + + F+ Sbjct: 178 SEAHPVLFRRIARRKQVEPGVKIIVADPRRTNTSRIADMHVAFRPGTDLAFMHSMAWVII 237 Query: 277 CTDITFRQFMNGALKGRIKEWHPT-LEDWENHLSTLFP 313 ++ +F + E P+ E ++ L P Sbjct: 238 NEELDNPRFWQRYVNFMDAEGKPSDFEGYKAFLENYRP 275 >1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory for structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum atcc 27405} SCOP: b.46.1.1 c.65.1.1 Length = 260 Score = 27.1 bits (59), Expect = 8.7 Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 6/147 (4%) Query: 106 TLQNVHQIKGEIL---GYIQIL-KEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLMK 161 T + V I E + + I+ KEI +N + M P + R + Sbjct: 69 TFEKVKLINPEYILFPHWSWIIPKEIFENFTCVVFHMTDLPFGRGGSPLQNLIERGIKKT 128 Query: 162 KYMPQVGTHGLDM--MFRTCTTQVSLDFSSEHDMATKLRVSFKLQPLATAIFASSPFAEG 219 K G+D +F + A+K+ + + L T Sbjct: 129 KISAIKVDGGIDTGDIFFKRDLDLYGTAEEIFMRASKIIFNDMIPELLTKRPVPQKQEGE 188 Query: 220 RINGFQSWRSEIWRHTDSDRTEILPFI 246 + + D D +I +I Sbjct: 189 ATVFQRRKPEQSEISPDFDLEKIYDYI 215 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.135 0.413 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,016,690 Number of extensions: 186189 Number of successful extensions: 372 Number of sequences better than 10.0: 1 Number of HSP's gapped: 363 Number of HSP's successfully gapped: 9 Length of query: 457 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 361 Effective length of database: 3,365,806 Effective search space: 1215055966 Effective search space used: 1215055966 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.4 bits)