BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase
[Candidatus Liberibacter asiaticus str. psy62]
         (457 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781161|ref|YP_003065574.1| glutamate--cysteine ligase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 457

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/457 (100%), Positives = 457/457 (100%)

Query: 1   MTCNPLANTIVTSIDDLVQHIASGIKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVT 60
           MTCNPLANTIVTSIDDLVQHIASGIKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVT
Sbjct: 1   MTCNPLANTIVTSIDDLVQHIASGIKPQEEFRIGTEHESFIFSRADHRPLPYDGEKSIVT 60

Query: 61  ILQAIQKKLAWKEIMDKGNIIGLANPLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGY 120
           ILQAIQKKLAWKEIMDKGNIIGLANPLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGY
Sbjct: 61  ILQAIQKKLAWKEIMDKGNIIGLANPLSKAGISIEPGGQLELSTTTLQNVHQIKGEILGY 120

Query: 121 IQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCT 180
           IQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCT
Sbjct: 121 IQILKEITQNLDLGILGMGFNPKWKLDEMPIMPKSRYVLMKKYMPQVGTHGLDMMFRTCT 180

Query: 181 TQVSLDFSSEHDMATKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRT 240
           TQVSLDFSSEHDMATKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRT
Sbjct: 181 TQVSLDFSSEHDMATKLRVSFKLQPLATAIFASSPFAEGRINGFQSWRSEIWRHTDSDRT 240

Query: 241 EILPFILRDNSNFEHYAQWALDIPMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPT 300
           EILPFILRDNSNFEHYAQWALDIPMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPT
Sbjct: 241 EILPFILRDNSNFEHYAQWALDIPMYFILRKKEYYCCTDITFRQFMNGALKGRIKEWHPT 300

Query: 301 LEDWENHLSTLFPAVRLRNCLEMRGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSS 360
           LEDWENHLSTLFPAVRLRNCLEMRGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSS
Sbjct: 301 LEDWENHLSTLFPAVRLRNCLEMRGADSGRLENIFAVAAFWTGILYDSSALQNADHLTSS 360

Query: 361 WSFYDINKLNNTVPSKGMRSTVRGQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLK 420
           WSFYDINKLNNTVPSKGMRSTVRGQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLK
Sbjct: 361 WSFYDINKLNNTVPSKGMRSTVRGQSLKDIAIQILTFAHQGLKNRSAKNHLQEDETIFLK 420

Query: 421 PLEKIIHNNQTTADEMLAAYHTRWGKSIDPCFEEYAY 457
           PLEKIIHNNQTTADEMLAAYHTRWGKSIDPCFEEYAY
Sbjct: 421 PLEKIIHNNQTTADEMLAAYHTRWGKSIDPCFEEYAY 457


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.135    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 295,706
Number of Sequences: 1233
Number of extensions: 12312
Number of successful extensions: 24
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 4
length of query: 457
length of database: 328,796
effective HSP length: 77
effective length of query: 380
effective length of database: 233,855
effective search space: 88864900
effective search space used: 88864900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)