HHsearch alignment for GI: 254781162 and conserved domain: TIGR03585
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=97.99 E-value=4.2e-05 Score=49.75 Aligned_cols=81 Identities=22% Similarity=0.410 Sum_probs=60.7
Q ss_pred CEEEEEEECCEEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHH-HHCCCCEEEEE---EC---HHH
Q ss_conf 078999988989999998776118822389976788511138995899999999999-61388479984---08---657
Q gi|254781162|r 73 SLSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAA-EKKGSQVIVLV---GD---IAY 145 (192)
Q Consensus 73 ~lslVA~~~~~IVG~i~~~pv~~~~~~~~~LgplaV~P~~rg~GiG~~Li~~~l~~a-~~~g~~~v~l~---g~---~~y 145 (192)
T Consensus 51 ~~~~ii~~~~~~IG~i~l~~id~~~~-~ae~g-i~~~~-~~~~G~g~~~~~~~l~~aF~~l~l~rl~~~v~~~N~~si~l 127 (156)
T TIGR03585 51 RRYWIVCQESRPIGVISFTDINLVHK-SAFWG-IYANP-FCKPGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKL 127 (156)
T ss_pred CEEEEEEECCCEEEEEEEEECCCCCC-EEEEE-EEECH-HHCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHH
T ss_conf 38999997992899998874030039-89999-98222-10257799999999999987569269999962568999999
Q ss_pred HHHCCCEECCC
Q ss_conf 87429487463
Q gi|254781162|r 146 YSKLGFQAVPW 156 (192)
Q Consensus 146 Y~rfGF~~~~~ 156 (192)
T Consensus 128 ~ek~GF~~EG~ 138 (156)
T TIGR03585 128 YEKFGFEREGV 138 (156)
T ss_pred HHHCCCEEEEE
T ss_conf 99789999999