RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781162|ref|YP_003065575.1| GCN5-related
N-acetyltransferase [Candidatus Liberibacter asiaticus str. psy62]
         (192 letters)



>gnl|CDD|140351 PTZ00330, PTZ00330, acetyltransferase; Provisional.
          Length = 147

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 97  KITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKGS-QVIVLVGD--IAYYSKLGFQA 153
           K  GH+   +VV P Y+ +G+GR LIS   + A   G  +VI+   +  +A+Y KLGF+A
Sbjct: 80  KCVGHI-EDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYKKLGFRA 138


>gnl|CDD|162430 TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase.
           Members of this model belong to the GCN5-related
           N-acetyltransferase (GNAT) superfamily. This model
           covers prokarotes and the archaea. The seed contains a
           characterized accession for Gram negative E. coli. An
           untraceable characterized accession (PIR|S66013) for
           Gram positive B. subtilis scores well (205.0) in the
           full alignment. Characterized members are lacking in the
           archaea. Noise cutoff (72.4) was set to exclude M. loti
           paralog of rimI. Trusted cutoff (80.0) was set at next
           highest scoring member in the mini-database.
          Length = 131

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 10/81 (12%)

Query: 80  EGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVL 139
            G ++VG   +    I     H+L  I V P YQ +GIGR L+   +D A+ +G   I L
Sbjct: 38  IGGKVVGYAGV---QIVLDEAHILN-IAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFL 93

Query: 140 ------VGDIAYYSKLGFQAV 154
                 +   A Y KLGF  +
Sbjct: 94  EVRVSNIAAQALYKKLGFNEI 114


>gnl|CDD|181103 PRK07757, PRK07757, acetyltransferase; Provisional.
          Length = 152

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 76  FLCAEGKRIVGSVRMTPISIEKITGHLLGPI---VVHPLYQNKGIGRKLISMSVDAAEKK 132
           ++  E   IVG   +       I    L  I    V   Y+ +GIGR L+   ++ A + 
Sbjct: 44  YVAEEEGEIVGCCALH------ILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEAREL 97

Query: 133 G-SQVIVLVGDIAYYSKLGFQAVPWKSL 159
           G  +V  L     ++ KLGF+ V  ++L
Sbjct: 98  GVKRVFALTYQPEFFEKLGFREVDKEAL 125


>gnl|CDD|181904 PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase;
           Provisional.
          Length = 146

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 106 IVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVL------VGDIAYYSKLGFQAV 154
           I V P YQ +G+GR L+   +D  EK+G   + L         IA Y  LGF  V
Sbjct: 69  IAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEV 123


>gnl|CDD|179611 PRK03624, PRK03624, putative acetyltransferase; Provisional.
          Length = 140

 Score = 35.7 bits (83), Expect = 0.008
 Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 30/102 (29%)

Query: 70  HDLSLSFLCAE-GKRIVGSVRMTPISIEKITGH-----LLGPIVVHPLYQNKGIGRKLIS 123
           HD SL FL AE G  +VG+V M         GH      L    VHP ++ +GIGR L++
Sbjct: 42  HDPSL-FLVAEVGGEVVGTV-MGGYD-----GHRGWAYYLA---VHPDFRGRGIGRALVA 91

Query: 124 MSVDAAEKK----GS---QVIVLVGD---IAYYSKLGFQAVP 155
                 EKK    G     + V   +   + +Y  LG++   
Sbjct: 92  ----RLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQD 129


>gnl|CDD|179965 PRK05218, PRK05218, heat shock protein 90; Provisional.
          Length = 613

 Score = 34.3 bits (80), Expect = 0.020
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 93  ISIEKITGHLLGPIVVHPLYQNKGIG-RKLISMSVDAAEK 131
              E     LL  +++H LY NK I  R+LIS + DA +K
Sbjct: 8   FQAE--VKQLL-HLMIHSLYSNKEIFLRELISNASDAIDK 44


>gnl|CDD|178308 PLN02706, PLN02706, glucosamine 6-phosphate N-acetyltransferase.
          Length = 150

 Score = 34.3 bits (79), Expect = 0.021
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 100 GHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVL---VGDIAYYSKLGF 151
           GH+   +VV    + KG+G+K+I    + A   G   ++L     + A+Y K G+
Sbjct: 86  GHI-EDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYEKCGY 139


>gnl|CDD|178776 PLN03238, PLN03238, probable histone acetyltransferase MYST;
           Provisional.
          Length = 290

 Score = 32.5 bits (74), Expect = 0.070
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 79  AEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG 133
             G  IVG      +S E    + L  I+  P YQ KG G+ LIS + + ++++G
Sbjct: 137 DHGSHIVGYFSKEKVSAE---DYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188


>gnl|CDD|117022 pfam08445, FR47, FR47-like protein.  The members of this family are
           similar to the C-terminal region of the D. melanogaster
           hypothetical protein FR47. This protein has been found
           to consist of two N-acyltransferase-like domains swapped
           with the C-terminal strands.
          Length = 86

 Score = 31.9 bits (73), Expect = 0.11
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 103 LGPIVVHPLYQNKGIGRKLISMSVDAAEKKGSQVIVLVG-----DIAYYSKLGFQA 153
           LG +   P ++ +G+G +L++       ++G     +V          Y KLGF+ 
Sbjct: 24  LGALQTLPEHRRRGLGSRLVAALARGIAERGITPFAVVVAGNTPSRRLYEKLGFRK 79


>gnl|CDD|177721 PLN00104, PLN00104, MYST -like histone acetyltransferase;
           Provisional.
          Length = 450

 Score = 31.6 bits (72), Expect = 0.14
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)

Query: 77  LC---AEGKRIVGSVRMTPISIEKIT--GHLLGPIVVHPLYQNKGIGRKLISMSVDAAEK 131
           LC     G  +VG       S EK +   + L  I+  P YQ KG G+ LI+ S + +++
Sbjct: 283 LCECDDRGCHMVGY-----FSKEKHSEEDYNLACILTLPPYQRKGYGKFLIAFSYELSKR 337

Query: 132 KG 133
           +G
Sbjct: 338 EG 339


>gnl|CDD|132147 TIGR03103, trio_acet_GNAT, GNAT-family acetyltransferase TIGR03103.
            Members of this protein family belong to the GNAT
           family of acetyltransferases. Each is part of a
           conserved three-gene cassette sparsely distributed
           across at least twenty different species known so far,
           including alpha, beta, and gamma Proteobacteria,
           Mycobacterium, and Prosthecochloris, which is a member
           of the Chlorobi. The other two members of the cassette
           are a probable protease and an asparagine synthetase
           family protein.
          Length = 547

 Score = 30.9 bits (70), Expect = 0.20
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 18/112 (16%)

Query: 58  VRAAVLLREQGMHDLSLSFLCAE---GKRIVGSVRMTPISIEKI-----TGHLLGPIVVH 109
           VR   +L  +  H  ++++L AE      I+G+V    +   K       G  L  + V 
Sbjct: 109 VRVDFVLDHR--HSRAITYLVAEDEASGAIIGTV--MGVDHRKAFNDPEHGSSLWCLAVD 164

Query: 110 PLYQNKGIGRKLISMSVDAAEKKGSQVIVL--VGD----IAYYSKLGFQAVP 155
           P   + G+G  L+    +  + +G   + L  + D    IA Y KLGF+ +P
Sbjct: 165 PQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIP 216


>gnl|CDD|132489 TIGR03448, mycothiol_MshD, mycothiol biosynthesis
           acetyltransferase.  Members of this family are MshD, the
           acetyltransferase that catalyzes the final step of
           mycothiol biosynthesis in various members of the
           Actinomyctes, Mycothiol replaces glutathione in these
           species.
          Length = 292

 Score = 30.1 bits (68), Expect = 0.43
 Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 25/128 (19%)

Query: 57  FVRAAVLLREQGMHDLSLSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKG 116
            +R    LRE G    +   +  +   IVG   + P      T   +  +VVHP ++ +G
Sbjct: 34  VLRG---LREPG-AGHTRHLVAVDSDPIVGYANLVPARG---TDPAMAELVVHPAHRRRG 86

Query: 117 IGRKLISMSVDAA-EKKGSQVIV-----LVGDIAYYSKLGFQ--------AVPWKSLILP 162
           IGR LI     A   K G ++ V     L    A  S+LG            P + L LP
Sbjct: 87  IGRALI----RALLAKGGGRLRVWAHGDLPAARALASRLGLVPTRELLQMRRPLRDLELP 142

Query: 163 APVDPNRV 170
            P  P+ V
Sbjct: 143 EPQVPDGV 150


>gnl|CDD|162253 TIGR01211, ELP3, histone acetyltransferase, ELP3 family.  The
           Saccharomyces cerevisiae member YPL086C has been
           characterized in vitro as an N-terminal
           acetyltransferase for all four core histones. It is a
           component of the RNA polymerase II holoenzyme,
           designated Elp3p for Elongator Protein 3. Members of
           this family are found in eukaryotes and archaea. These
           proteins are part of the larger set of GNAT
           acetyltransferases.
          Length = 522

 Score = 29.7 bits (67), Expect = 0.44
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 12/62 (19%)

Query: 101 HLLGPIVVHPL-------YQNKGIGRKLISMSVDAAEKKGSQ---VIVLVGDIAYYSKLG 150
           H+ G  V  P+       +Q++G GR+L+  +   A ++GS+   VI  +G   YY KLG
Sbjct: 453 HVYGSEV--PIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGIGVREYYRKLG 510

Query: 151 FQ 152
           ++
Sbjct: 511 YE 512


>gnl|CDD|181170 PRK07922, PRK07922, N-acetylglutamate synthase; Validated.
          Length = 169

 Score = 29.5 bits (67), Expect = 0.56
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 106 IVVHPLYQNKGIGRKLISMSVDAAEKKG-SQVIVLVGDIAYYSKLGFQAVPWKSLILPAP 164
           + V P  + +G+G  ++   +D A + G S+V VL  ++ ++++ GF        I   P
Sbjct: 76  VAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTFEVEFFARHGFVE------IDGTP 129

Query: 165 VDP 167
           V P
Sbjct: 130 VTP 132


>gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
          Length = 727

 Score = 29.0 bits (66), Expect = 0.74
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 7/41 (17%)

Query: 105 PIVVHPLYQNKGIG-------RKLISMSVDAAEKKGSQVIV 138
           P+VV PL  N G G       R+ I  +   A K+ S VIV
Sbjct: 251 PVVVKPLDGNHGRGVTVNITTREEIEAAYAVASKESSDVIV 291


>gnl|CDD|182510 PRK10514, PRK10514, putative acetyltransferase; Provisional.
          Length = 145

 Score = 28.0 bits (63), Expect = 1.5
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 15/69 (21%)

Query: 92  PISIEKITGHLLGPIVVHPLYQNKGIGRKLIS--------MSVDAAEKKGSQVIVLVGDI 143
           P+    ++G  +  + V P  +  G+GR L+         ++ D  E+    V       
Sbjct: 61  PVGFMLLSGGHMEALFVDPDVRGCGVGRMLVEHALSLHPELTTDVNEQNEQAV------- 113

Query: 144 AYYSKLGFQ 152
            +Y K+GF+
Sbjct: 114 GFYKKMGFK 122


>gnl|CDD|173359 PTZ00064, PTZ00064, histone acetyltransferase; Provisional.
          Length = 552

 Score = 27.7 bits (61), Expect = 2.2
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 80  EGKRIVGSVRMTPISIEKIT--GHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG 133
           EG  IVG       S EK++   + L  I+  P YQ KG G+ L+ +S   + K+G
Sbjct: 367 EGCHIVGY-----FSKEKVSLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417


>gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional.
          Length = 881

 Score = 27.3 bits (61), Expect = 2.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 6/40 (15%)

Query: 126 VDAAEKKGSQVIVLVGDIAYYSKLGFQAV-----PWKSLI 160
           VD  + K  ++I LV  +AYY+K+ F+ V      W ++I
Sbjct: 317 VDRLDDK-RKLIELVLSMAYYAKINFEDVFSPIKTWDAII 355


>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase.  Cyanophycin
           synthesis is analogous to polyhydroxyalkanoic acid (PHA)
           biosynthesis, except that PHA polymers lack nitrogen and
           may be made under nitrogen-limiting conditions.
          Length = 864

 Score = 26.7 bits (59), Expect = 4.1
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 7/42 (16%)

Query: 104 GPIVVHPLYQNKGIG-------RKLISMSVDAAEKKGSQVIV 138
            P+V+ P   N G G       R  I  + +AA ++ S VIV
Sbjct: 249 YPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVEESSGVIV 290


>gnl|CDD|152258 pfam11822, DUF3342, Domain of unknown function (DUF3342).  This
           family of proteins are functionally uncharacterized.
           This family is found in bacteria. This presumed domain
           is typically between 170 to 303 amino acids in length.
           The N-terminal half of this family is a BTB-like domain.
          Length = 302

 Score = 26.2 bits (58), Expect = 4.7
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 1   MHDNNIELRKFLSIAFFEFICWRRSRWQKIGA---FFLERLEHDSSICAMHADSFGPGRF 57
           + D + ++ +++S    E   W +  W+  G+    +  R  H  S+      S+ P  F
Sbjct: 214 VADKSWDVLEYISWLTEELESWAKVYWRIWGSINYLYCRRCNHLFSLTDTTHCSYHPAAF 273

Query: 58  VRA 60
              
Sbjct: 274 SFP 276


>gnl|CDD|183948 PRK13285, PRK13285, flagellar assembly protein FliW; Provisional.
          Length = 148

 Score = 26.0 bits (58), Expect = 6.1
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 3/32 (9%)

Query: 92  PISIEKITGHLLGPIVVHPLYQNKGIGRKLIS 123
           P   EKIT +L  PI+++     K  G+++I 
Sbjct: 99  PEDPEKITANLQAPIIINK---KKRKGKQVIL 127


>gnl|CDD|184245 PRK13688, PRK13688, hypothetical protein; Provisional.
          Length = 156

 Score = 26.1 bits (58), Expect = 6.2
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 108 VHPLYQNKGIGRKLISMSVDAAEKKGS--QVIVLVGDIAYYSKLGFQAV 154
           V P YQN+G G  L    VD A+      + I       ++ KLGF  V
Sbjct: 87  VLPKYQNRGYGEML----VDFAKSFQLPIKTIARNKSKDFWLKLGFTPV 131


>gnl|CDD|177387 PHA02553, 6, baseplate wedge subunit; Provisional.
          Length = 611

 Score = 25.8 bits (57), Expect = 8.3
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 74  LSFLCAEGKRIVGSVRMTPISIEKITGHLLGPIVVHPLYQNKGIGRKLISMSVDAAEKKG 133
           +SF     +  V S   +  S E    + +  IV      + GIG+ +I    D     G
Sbjct: 478 ISFGNQIKEGSVKSSGFSFPSEEDDFSYDVR-IVSTDDDTSTGIGKIVIGPFADKTAIDG 536

Query: 134 SQVIVLVGDIAYYS 147
             +   VG + Y  
Sbjct: 537 RDLYYEVGTVDYVK 550


>gnl|CDD|183959 PRK13300, PRK13300, tRNA CCA-pyrophosphorylase; Provisional.
          Length = 447

 Score = 25.6 bits (57), Expect = 8.6
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 8/24 (33%)

Query: 157 KSLILPAPVDPNRVLFLPLVQNVA 180
             L++  PVDPNR        NVA
Sbjct: 221 DPLVVIDPVDPNR--------NVA 236


>gnl|CDD|149336 pfam08217, DUF1712, Fungal domain of unknown function (DUF1712).
           The function of this family of proteins is unknown.
          Length = 468

 Score = 25.4 bits (56), Expect = 9.9
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 156 WKSLILPAPVDPNRVL----FLPLVQNVAQNIKGIVR 188
           W+ L LP   D    L     L L +     I+G +R
Sbjct: 140 WQDLKLPPECDLLDELGTVQNLLLDKENYLGIQGFIR 176


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.327    0.142    0.434 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,237,353
Number of extensions: 203857
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 488
Number of HSP's successfully gapped: 34
Length of query: 192
Length of database: 5,994,473
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,092,969
Effective search space: 425668776
Effective search space used: 425668776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (24.5 bits)