RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781163|ref|YP_003065576.1| hypothetical protein
CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62]
         (214 letters)



>2efl_A Formin-binding protein 1; EFC domain, structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; 2.61A {Homo sapiens} (A:1-264)
          Length = 264

 Score = 32.2 bits (72), Expect = 0.064
 Identities = 14/106 (13%), Positives = 32/106 (30%), Gaps = 2/106 (1%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTH--FKEYIDEVDKILM 163
           I++ +   +       IE  Y + L  +S+K   K     +        +          
Sbjct: 27  IDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEXN 86

Query: 164 RYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209
            Y  +   +++    +I   L          +K N H  ++ +   
Sbjct: 87  DYAGQHEVISENXASQIIVDLARYVQELKQERKSNFHDGRKAQQHI 132


>2efk_A CDC42-interacting protein 4; EFC domain, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; 2.30A {Homo sapiens} (A:)
          Length = 301

 Score = 31.5 bits (70), Expect = 0.092
 Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 6/110 (5%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDF------FNSKFFTHFKEYIDEVD 159
           +++     +       +E  Y + L  + +K + K                F + + EV+
Sbjct: 20  LDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVN 79

Query: 160 KILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209
               +  +    L+     ++  Y    K  R    ++     ++L N +
Sbjct: 80  DFAGQRELVAENLSVRVCLELTKYSQEXKQERKXHFQEGRRAQQQLENGF 129


>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,
           alternative splicing, coiled coil, cytoplasmic vesicle,
           endocytosis, phosphoprotein, polymorphism; 2.78A {Homo
           sapiens} (A:1-124,A:261-486)
          Length = 350

 Score = 28.9 bits (63), Expect = 0.57
 Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 9/81 (11%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRY 165
             +  D+         IE  Y Q L + +++  +      ++ T  ++          R 
Sbjct: 35  HRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGT-VEKAWMAFMSEAERV 93

Query: 166 GIEGIPLTDFDHEKIKSYLTH 186
                      H ++K+ L +
Sbjct: 94  SE--------LHLEVKASLMN 106


>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA
           replication; HET: DNA; 2.30A {Homo sapiens}
           (B:1-11,B:65-185)
          Length = 132

 Score = 28.7 bits (64), Expect = 0.57
 Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHI 187
           + LEK+     +++ F      ++     E+ K+L+ +  + IP      ++I++ +  +
Sbjct: 16  EKLEKMRDHERKEETFTPMPSPYY----MELTKLLLNHASDNIP----KADEIRTLVKDM 67

Query: 188 KIVR 191
              R
Sbjct: 68  WDTR 71


>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine
           biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE
           LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* (A:)
          Length = 201

 Score = 28.5 bits (63), Expect = 0.69
 Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV 190
           F   +F   +KE    VD       ++ I    +    +  Y   I +V
Sbjct: 84  FVPGEFPHEYKEKFILVDNEHRLKKVQXIE-GGYLDLGVTYYXDTIHVV 131


>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function;
           1.50A {Mycobacterium tuberculosis} (A:19-74)
          Length = 56

 Score = 28.4 bits (64), Expect = 0.77
 Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 5/42 (11%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           +    +    + I  +P+   D +++   LT     RD + K
Sbjct: 9   LTAAAQYXREHDIGALPICG-DDDRLHGXLTD----RDIVIK 45


>2ef7_A Hypothetical protein ST2348; CBS-domain, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; 2.10A {Sulfolobus tokodaii str}
           (A:78-133)
          Length = 56

 Score = 28.0 bits (63), Expect = 0.99
 Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 5/41 (12%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
           I     +  ++ I  +P+ D D   +K  ++    +RD  +
Sbjct: 9   ITGALALXRQFNIRHLPVVD-DKGNLKGIIS----IRDITR 44


>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport;
           2.94A {Thermus thermophilus HB8} PDB: 2yvx_A (A:227-294)
          Length = 68

 Score = 28.1 bits (63), Expect = 1.1
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 5/41 (12%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
            +EV +++  Y    +P+ D +  ++   +T    V D L 
Sbjct: 12  QEEVARLMADYDFTVLPVVD-EEGRLVGIVT----VDDVLD 47


>3hah_A Human pacsin1 F-BAR; pacsin,syndapin,FAP52,F-BAR, coiled
           coil, cytoplasm, endocytosis, phosphoprotein,
           polymorphism, SH3 domain; 2.77A {Homo sapiens} PDB:
           3hai_A (A:1-125,A:260-325)
          Length = 191

 Score = 27.6 bits (61), Expect = 1.4
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFT---HFKEYIDEVDKI 161
             +  D+         IE  YGQ L   +++  +      ++ +    +   + E DK+
Sbjct: 36  HRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKV 94


>2qrd_G Protein C1556.08C; AMPK, ADP, ATP, ATP-binding, kinase,
           nucleotide-binding, serine/threonine-protein kinase,
           transferase, CBS domain; HET: ADP ATP; 2.41A
           {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G*
           2oox_G* 2ooy_G* (G:75-120,G:191-251)
          Length = 107

 Score = 27.6 bits (61), Expect = 1.4
 Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHY 201
           + +V K+L    I  +P+ +     + +    + ++      D  + 
Sbjct: 60  VYDVIKMLAEKNISAVPIVN-SEGTLLNVYESVDVMHLIQDGDYSNL 105


>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST
           JOHN'S WORT, depression, allergy, PR-10 protein,
           cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A
           {Hypericum perforatum} (A:)
          Length = 165

 Score = 26.6 bits (58), Expect = 2.4
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRD 192
           F +    T+     DE+D              D   + I+  +  +K+   
Sbjct: 65  FVDGHPLTYMLHKFDEIDAANFYCKYTLFE-GDVLRDNIEKVVYEVKLEAV 114


>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain,
           FCH, adaptor, endocytosis, phosphoprotein; 2.40A
           {Saccharomyces cerevisiae} (A:1-254)
          Length = 254

 Score = 26.8 bits (58), Expect = 2.5
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 1/104 (0%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSK-FFTHFKEYIDEVDKILMR 164
             + KD   LF  + N++  Y Q L KI  +N +     +            E+      
Sbjct: 56  KLLNKDFYLLFKELANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFN 115

Query: 165 YGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRND 208
              E   + D   E++KS L       + L +  +   KE   +
Sbjct: 116 SLGELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVEN 159


>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1;
           transferase, CBS domain, lipid synthesis, fatty acid
           biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB:
           2uv5_A* 2uv6_A* 2uv7_A* (A:92-152)
          Length = 61

 Score = 26.5 bits (59), Expect = 2.7
 Identities = 5/41 (12%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
           ++ +   L+   +  + + D +++ +K  ++    + D L+
Sbjct: 21  LETIINRLVEAEVHRLVVVD-ENDVVKGIVS----LSDILQ 56


>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
           oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
           (A:160-217)
          Length = 58

 Score = 26.5 bits (59), Expect = 2.8
 Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
           ++  ++IL  + IE +PL D +  ++   +T    ++D  K
Sbjct: 13  LETAERILHEHRIEKLPLVD-NSGRLSGLIT----IKDIEK 48


>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding,
           protein-solvent interaction, oxidoreductase; HET: NAD;
           1.95A {Haloarcula marismortui} (A:)
          Length = 303

 Score = 26.3 bits (57), Expect = 2.9
 Identities = 4/29 (13%), Positives = 10/29 (34%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
           I    L D++ + +      +    D + 
Sbjct: 275 IVEWDLDDYEQDLMADAAEKLSDQYDKIS 303


>1e09_A PRU AV 1; allergen, major cherry allergen,
           pathogenesis-related protein, heteronuclear structure;
           NMR {Prunus avium} (A:)
          Length = 159

 Score = 26.2 bits (57), Expect = 3.1
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 148 FTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRD 192
           + + K  ID +DK    Y    I   D   + ++      K+V  
Sbjct: 64  YGYVKHKIDSIDKENYSYSYTLIE-GDALGDTLEKISYETKLVAS 107


>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1,
           NPPSFA, national project on protein structural and
           functional analyses; NMR {Homo sapiens} (A:)
          Length = 178

 Score = 26.3 bits (57), Expect = 3.3
 Identities = 2/79 (2%), Positives = 17/79 (21%), Gaps = 12/79 (15%)

Query: 139 EKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIP---LTDFDHEKIKSYLTH--------- 186
           +            + +   V + +     +  P   +        +              
Sbjct: 100 KDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDEL 159

Query: 187 IKIVRDCLKKDNIHYAKEL 205
           +  +   ++       +++
Sbjct: 160 MMRLMAAMEIFTAQQQEDI 178


>3ddj_A CBS domain-containing protein; NP_344512.1, structural
           genomics, joint center for structural genomics, JCSG;
           HET: AMP; 1.80A {Sulfolobus solfataricus} (A:155-205)
          Length = 51

 Score = 26.0 bits (58), Expect = 3.5
 Identities = 7/24 (29%), Positives = 15/24 (62%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHE 178
           +D+  K+ +R G   +P+ D D++
Sbjct: 21  LDQAVKLXLRRGFRRLPVIDDDNK 44


>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
           oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
           (A:97-159)
          Length = 63

 Score = 26.1 bits (58), Expect = 3.7
 Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 5/43 (11%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHE-KIKSYLTHIKIVRDCLKK 196
           + E +++  RY I G+P+ +     K+   +T+    RD    
Sbjct: 13  VSEAEELXQRYRISGVPIVETLANRKLVGIITN----RDXRFI 51


>3ddj_A CBS domain-containing protein; NP_344512.1, structural
           genomics, joint center for structural genomics, JCSG;
           HET: AMP; 1.80A {Sulfolobus solfataricus} (A:104-154)
          Length = 51

 Score = 26.1 bits (58), Expect = 3.7
 Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVR 191
                 I +      +P+ D  ++K    +T  + + 
Sbjct: 9   EFTAINIXVTRNFGSLPVVD-INDKPVGIVTEREFLL 44


>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport
           protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A
           (A:204-278)
          Length = 75

 Score = 25.9 bits (57), Expect = 4.0
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 5/41 (12%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
            +EV +++  Y    +P+ D +  ++   +T    V D L 
Sbjct: 15  QEEVARLMADYDFTVLPVVD-EEGRLVGIVT----VDDVLD 50


>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain
           ATCC 700825 / FA 1090), DSBC, structural genomics,
           unknown function; 2.00A {Neisseria gonorrhoeae fa 1090}
           (A:)
          Length = 147

 Score = 25.9 bits (56), Expect = 4.1
 Identities = 5/47 (10%), Positives = 10/47 (21%), Gaps = 3/47 (6%)

Query: 125 GYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIP 171
              +           K              + E   +  ++G  G P
Sbjct: 68  QPDRAKAWTDWXRKGKFPVGGSIC---DNPVAETTSLGEQFGFNGTP 111


>2v65_A LDH-A, L-lactate dehydrogenase A chain; oxidoreductase, NAD,
           FISH, cytoplasm, glycolysis, psychrophIle; 2.35A
           {Champsocephalus gunnari} (A:)
          Length = 331

 Score = 26.1 bits (56), Expect = 4.2
 Identities = 3/29 (10%), Positives = 12/29 (41%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
           +  + L   + ++++     +  V+  L 
Sbjct: 302 VIHMTLKAEEEKQLQKSAETLWGVQKELT 330


>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic,
           bound nucleotide, AMP, NADH, structural genomics, PSI-2;
           HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
           (A:37-98)
          Length = 62

 Score = 25.8 bits (57), Expect = 4.4
 Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 5/42 (11%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           I E    L  + I  + +TD     +    T     RD +K 
Sbjct: 10  IGEAAGTLHAHKIGAVVVTD-ADGVVLGIFT----ERDLVKA 46


>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid
           cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} (A:)
          Length = 309

 Score = 25.7 bits (55), Expect = 4.9
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           I  +PL + +   + +    ++   D LK 
Sbjct: 279 ILELPLNEEEMALLNASAKAVRATLDTLKS 308


>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
           nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
           {Homo sapiens} (A:174-229)
          Length = 56

 Score = 25.7 bits (57), Expect = 5.0
 Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 5/41 (12%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
           + E ++IL R     +P+ + D +++ + +       D  K
Sbjct: 21  LKEANEILQRSKKGKLPIVN-DCDELVAIIA----RTDLKK 56


>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant
           protein, PR- 10 protein, pathogenesis-related protein,
           allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A*
           1xdf_A* 2k7h_A (A:)
          Length = 158

 Score = 25.8 bits (56), Expect = 5.0
 Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 139 EKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRD 192
           +  F       +    I+ +D+  + Y    +       + I+      K+V  
Sbjct: 55  KLTFIEGGESKYVLHKIEAIDEANLGYNYSIVG-GVGLPDTIEKISFETKLVEG 107


>1y6j_A L-lactate dehydrogenase; southeast collaboratory for
           structural genomics, secsg, protein structure
           initiative, PSI, oxidoreductase; 3.01A {Clostridium
           thermocellum} (A:)
          Length = 318

 Score = 25.7 bits (55), Expect = 5.3
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           +    LT  + E ++     +K V + +K 
Sbjct: 288 VLQFNLTPEEEEALRFSAEQVKKVLNEVKN 317


>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid
           cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme}
           (A:144-310)
          Length = 167

 Score = 25.5 bits (55), Expect = 5.5
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           I  I L   D + ++     +      L+ 
Sbjct: 135 IYEINLDQADLDLLQKSAKIVDENCKMLES 164


>2yzq_A Putative uncharacterized protein PH1780;
           sheet/helix/sheet/sheet/helix, structural genomics,
           unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus
           horikoshii} (A:204-282)
          Length = 79

 Score = 25.4 bits (56), Expect = 5.6
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 5/41 (12%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
           + EV   + +Y IE +P+       +   +       D LK
Sbjct: 37  VHEVALKMAKYSIEQLPVIR-GEGDLIGLIR----DFDLLK 72


>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic
           domain, CBS domains, ION channel regulatory subunit,
           transport protein; 3.10A {Torpedo marmorata} (A:1-81)
          Length = 81

 Score = 25.5 bits (56), Expect = 5.6
 Identities = 3/42 (7%), Positives = 12/42 (28%), Gaps = 5/42 (11%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHE-KIKSYLTHIKIVRDCLK 195
             ++  +L +  ++  P  D      +   +       +   
Sbjct: 32  YGDLLHVLRQTKLKFFPFVDTPDTNTLLGSID----RTEVEG 69


>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET:
           NAD; 2.40A {Sus scrofa} (A:156-333)
          Length = 178

 Score = 25.6 bits (55), Expect = 5.7
 Identities = 7/30 (23%), Positives = 15/30 (50%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           +EG+P+ DF  EK+      +   ++   +
Sbjct: 144 VEGLPINDFSREKMDLTAKELAEEKETAFE 173


>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
           oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
           jannaschii} (A:)
          Length = 313

 Score = 25.3 bits (54), Expect = 5.9
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           +  I L   +    +     IK   + +K 
Sbjct: 283 VVSIELDKDEIIAFRKSAEIIKKYCEEVKN 312


>1b8p_A Protein (malate dehydrogenase); 1.90A {Aquaspirillum
           arcticum} (A:)
          Length = 329

 Score = 25.3 bits (54), Expect = 6.1
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           ++G+ +  F  E+I   L  +   ++ ++ 
Sbjct: 297 VQGLSIDAFSQERINVTLNELLEEQNGVQH 326


>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic
           acid cycle, structural genomics; HET: ADP; 2.25A
           {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
           (A:)
          Length = 324

 Score = 25.3 bits (54), Expect = 6.1
 Identities = 3/30 (10%), Positives = 9/30 (30%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           I  I L   +  +    +  +  + +    
Sbjct: 289 IIEIDLDKDEKAQFDKSVASVAGLCEACIG 318


>3ddj_A CBS domain-containing protein; NP_344512.1, structural
           genomics, joint center for structural genomics, JCSG;
           HET: AMP; 1.80A {Sulfolobus solfataricus} (A:233-296)
          Length = 64

 Score = 25.4 bits (56), Expect = 6.3
 Identities = 3/37 (8%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVR 191
           ++      +   I  + + +     I+  +T   ++ 
Sbjct: 14  VNRAAAEXIVKRIGSLLILN-KDNTIRGIITERDLLI 49


>2huj_A LIN2004 protein; hypothetical protein, structural genomics,
           PSI- 2, protein structure initiative, joint center for
           structural genomics, JCSG; 1.74A {Listeria innocua} (A:)
          Length = 140

 Score = 25.1 bits (55), Expect = 6.9
 Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 9/62 (14%)

Query: 101 LGNPNIEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDK 160
           L     E+     QL    +     Y        ++    DF+        K ++DE  +
Sbjct: 15  LYFQGXELLIRTEQLLLQNEKNWELY----LSNREEEKPFDFY-----KDXKPFVDEAKR 65

Query: 161 IL 162
             
Sbjct: 66  CA 67


>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii}
           (A:)
          Length = 104

 Score = 25.3 bits (55), Expect = 6.9
 Identities = 11/47 (23%), Positives = 17/47 (36%)

Query: 132 KISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHE 178
            I    +E+   +       K   DE   I  RYG+  +P   F  +
Sbjct: 32  LILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKD 78


>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP,
           PSI, MCSG, structural genomics; HET: AMP; 2.75A
           {Klebsiella pneumoniae subsp} (A:1-78)
          Length = 78

 Score = 25.0 bits (55), Expect = 7.0
 Identities = 9/52 (17%), Positives = 14/52 (26%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELR 206
              + + L       I L     +   S L   +  R   +K        LR
Sbjct: 23  WKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLR 74


>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
           domain, vesicle trafficking, membrane curvature,
           endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
           sapiens} (A:1-247)
          Length = 247

 Score = 25.3 bits (54), Expect = 7.1
 Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRY 165
               K++A        IE  Y + + K+++         + F   +  +    +K+   +
Sbjct: 31  QISTKELADFVRERATIEEAYSRSMTKLAKSASNYSQLGT-FAPVWDVFKTSTEKLANCH 89

Query: 166 GIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209
                 L +   E  K     +K  +    K+ +    E     
Sbjct: 90  LDLVRKLQELIKEVQKYGEEQVKSHKKT--KEEVAGTLEAVQTI 131


>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex,
           oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum}
           (A:152-322)
          Length = 171

 Score = 25.2 bits (54), Expect = 7.2
 Identities = 3/30 (10%), Positives = 9/30 (30%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           +  + L   +  K    +   K ++     
Sbjct: 138 VIELQLNSEEKAKFDEAIAETKRMKALAHH 167


>3gnj_A Thioredoxin domain protein; APC92103, structural genomics,
           PSI-2, protein structure initiative; 1.99A
           {Desulfitobacterium hafniense dcb-2} (A:)
          Length = 111

 Score = 25.0 bits (54), Expect = 7.3
 Identities = 7/47 (14%), Positives = 20/47 (42%)

Query: 132 KISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHE 178
           K++    E      + F  +   ++E   +  R+ ++G+P   +  +
Sbjct: 39  KVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKD 85


>2hjr_A Malate dehydrogenase; malaria, structural genomics,
           structural genomics consortium, SGC, oxidoreductase;
           HET: CIT APR; 2.20A {Cryptosporidium parvum} (A:)
          Length = 328

 Score = 25.0 bits (53), Expect = 7.4
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           +  + L+D +       +  I+ +   LK 
Sbjct: 296 VVIVNLSDDEKSLFSKSVESIQNLVQDLKS 325


>2v7p_A L-lactate dehydrogenase; oxidoreductase, phosphorylation,
           NAD, cytoplasm, glycolysis, thermophIle; HET: NAD; 2.10A
           {Thermus thermophilus} PDB: 2e37_A* 2v6m_A* (A:)
          Length = 310

 Score = 24.9 bits (53), Expect = 7.5
 Identities = 4/29 (13%), Positives = 9/29 (31%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
                L+  + E ++     +K     L 
Sbjct: 281 TVYPSLSPEEREALRRSAEILKEAAFALG 309


>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog
           complex, oxidoreductase; HET: A3D; 2.00A
           {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A*
           2fm3_A (A:)
          Length = 317

 Score = 25.0 bits (53), Expect = 7.6
 Identities = 4/30 (13%), Positives = 11/30 (36%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           I  + LT  + + +   +  +  +   L  
Sbjct: 286 ILELDLTPLEQKLLGESINEVNTISKVLDN 315


>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove,
           disordered Se-Met, structural genomics, putative
           ribosomal protein, PSI; HET: MSE; 1.50A {Escherichia
           coli} (A:)
          Length = 221

 Score = 24.9 bits (54), Expect = 8.3
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 147 FFTHFKEYIDEVDKILMRYGIEGIPLTDFD 176
             T     + E+  +L  +G++ +  TD  
Sbjct: 28  LATGNVGKVRELASLLSDFGLDIVAQTDLG 57


>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus
           tremula} (A:)
          Length = 113

 Score = 25.0 bits (54), Expect = 8.9
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 132 KISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIP 171
           K+      +        T  K  +DE+  +   + +E +P
Sbjct: 42  KMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEAMP 81


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.327    0.143    0.450 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,739,008
Number of extensions: 80331
Number of successful extensions: 542
Number of sequences better than 10.0: 1
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 93
Length of query: 214
Length of database: 4,956,049
Length adjustment: 85
Effective length of query: 129
Effective length of database: 2,082,624
Effective search space: 268658496
Effective search space used: 268658496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)