RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781163|ref|YP_003065576.1| hypothetical protein
CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62]
         (214 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 30/97 (30%)

Query: 71  WFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQ-- 128
           W   E F +    K   AI VL F  V      PN  +   I +     D++EN  G   
Sbjct: 289 W---ESF-FVSVRK---AITVLFFIGVRCYEAYPNTSLPPSILE-----DSLENNEGVPS 336

Query: 129 YLEKI---SQKNVEKDFFNSKFFTHFKEYIDEVDKIL 162
            +  I   +Q+ V+              Y+++ +  L
Sbjct: 337 PMLSISNLTQEQVQD-------------YVNKTNSHL 360



 Score = 27.6 bits (61), Expect = 2.3
 Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 50/138 (36%)

Query: 77  FSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKD-----IAQLFTLIDNIENGYGQYLE 131
               V        + L   F   +L  P    A D      A+L           G++L 
Sbjct: 18  HVLLVPTASFFIASQLQEQF-NKILPEPTEGFAADDEPTTPAEL----------VGKFLG 66

Query: 132 KISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVR 191
            +S   VE             ++ D+V  +          LT+F+               
Sbjct: 67  YVSSL-VEPS--------KVGQF-DQVLNLC---------LTEFE--------------N 93

Query: 192 DCLKKDNIH-YAKELRND 208
             L+ ++IH  A +L  +
Sbjct: 94  CYLEGNDIHALAAKLLQE 111


>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
           splicing, coiled coil, cytoplasmic vesicle, endocytosis,
           phosphoprotein, polymorphism; 2.78A {Homo sapiens}
          Length = 486

 Score = 32.3 bits (72), Expect = 0.072
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161
             +  D+         IE  Y Q L + +++    VEK          +  ++ E +++
Sbjct: 35  HRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERV 93


>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S
           WORT, depression, allergy, PR-10 protein, cytokinin,
           plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum
           perforatum}
          Length = 165

 Score = 32.1 bits (73), Expect = 0.094
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV---RDCLK 195
           F +    T+     DE+D           EG  L D     I+  +  +K+         
Sbjct: 65  FVDGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRD----NIEKVVYEVKLEAVGGGSKG 120

Query: 196 KDNIHY 201
           K  + Y
Sbjct: 121 KITVTY 126


>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
           domain, vesicle trafficking, membrane curvature,
           endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
           sapiens}
          Length = 276

 Score = 31.4 bits (70), Expect = 0.14
 Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 8/105 (7%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRY 165
               K++A        IE  Y + + K+++         + F   +  +    +K+    
Sbjct: 31  QISTKELADFVRERATIEEAYSRSMTKLAKSASNYSQLGT-FAPVWDVFKTSTEKL---- 85

Query: 166 GIEGIPLTDFDHEKIKSYLT---HIKIVRDCLKKDNIHYAKELRN 207
               + L     E IK                K++     + ++ 
Sbjct: 86  ANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQT 130


>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
           9257A, PSI-2, protein structure initiative; 2.00A
           {Caulobacter crescentus CB15}
          Length = 417

 Score = 31.3 bits (70), Expect = 0.16
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 2/111 (1%)

Query: 68  FAYWFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYG 127
            A +            KI  A   +  + +      P+ E    +  L    D ++    
Sbjct: 254 KAVYDHPRNLDDARLKKIADAGGAICINSIYLTDTTPSPERKAALEALGRAPD-MKTATP 312

Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPL-TDFDH 177
           + ++  + K    D  +      F  Y+  +  +L   G +G+ +  D+D 
Sbjct: 313 EAVKAYADKRAAIDKAHPAARGDFDLYMKSMLHVLKVAGPKGVCVGADWDG 363


>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related
           protein, heteronuclear structure; NMR {Prunus avium}
           SCOP: d.129.3.1 PDB: 1h2o_A
          Length = 159

 Score = 31.3 bits (71), Expect = 0.17
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV 190
           F     + + K  ID +DK    Y    IEG  L D     ++      K+V
Sbjct: 58  FGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGD----TLEKISYETKLV 105


>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein,
           PR- 10 protein, pathogenesis-related protein, allergen;
           HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A*
           2k7h_A
          Length = 158

 Score = 31.0 bits (70), Expect = 0.20
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 11/61 (18%)

Query: 148 FTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV----RDCLKKDNIH 200
             +    I+ +D+  + Y    + G+ L D     I+      K+V       + K  I 
Sbjct: 64  SKYVLHKIEAIDEANLGYNYSIVGGVGLPD----TIEKISFETKLVEGANGGSIGKVTIK 119

Query: 201 Y 201
            
Sbjct: 120 I 120


>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis,
           dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A
           {Thalictrum flavum} PDB: 2vne_A*
          Length = 201

 Score = 30.7 bits (69), Expect = 0.25
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV 190
           F   +F   +KE    VD       ++ I    +    +  Y+  I +V
Sbjct: 84  FVPGEFPHEYKEKFILVDNEHRLKKVQMIE-GGYLDLGVTYYMDTIHVV 131


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 30.2 bits (67), Expect = 0.40
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 22/101 (21%)

Query: 75   EKFSYDV----SIKI--VLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQ 128
            E+F Y +    ++K   V A+++  F F     G   I +  D   L+  I   E+ Y +
Sbjct: 1420 EQFEYVLYPSKTLKTDGVRAVSITSFGF--GQKGGQAIVVHPDY--LYGAI--TEDRYNE 1473

Query: 129  YLEKIS--QKNVEKDFFN----SKFFTHFKE---YIDEVDK 160
            Y+ K+S  +K+  K F N    +K F   KE   Y DE+++
Sbjct: 1474 YVAKVSAREKSAYKFFHNGMIYNKLFVS-KEHAPYTDELEE 1513


>2vjg_A Major allergen DAU C 1; major carrot allergen, pathogenesis-related
           protein, plant defense; HET: P4C PG4 PGE; 2.70A {Daucus
           carota} PDB: 2wql_A* 2bk0_A
          Length = 154

 Score = 29.9 bits (67), Expect = 0.42
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 11/67 (16%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIVR----DCL 194
                  T      D V+K  + Y    I+G    D     I+S  TH+ +V       +
Sbjct: 58  LPEGSPITTMTVRTDAVNKEALSYDSTVIDG----DILLGFIESIETHMVVVPTADGGSI 113

Query: 195 KKDNIHY 201
            K    +
Sbjct: 114 TKTTAIF 120


>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
           {Drosophila melanogaster}
          Length = 290

 Score = 29.8 bits (66), Expect = 0.50
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161
            ++  D+ QL     +IE GY + L   S+K    +EK          +K  + E ++I
Sbjct: 21  YKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERI 79


>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
          Length = 305

 Score = 29.8 bits (66), Expect = 0.53
 Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 6/108 (5%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSK------FFTHFKEYIDEVD 159
           I++ +   +       IE  Y + L  +S+K   K     +          F   ++E++
Sbjct: 27  IDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMN 86

Query: 160 KILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRN 207
               ++ +    +       +  Y+  +K  R     D     + +  
Sbjct: 87  DYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIET 134


>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel
           beta-sheet, plant protein; 2.20A {Pachyrhizus erosus}
           SCOP: d.129.3.1 PDB: 1txc_A*
          Length = 157

 Score = 29.5 bits (66), Expect = 0.54
 Identities = 5/48 (10%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKI 189
                  +   + +D +D+  + Y    +       E ++      K+
Sbjct: 57  ANEGDKTSFVLQKVDAIDEANLGYDYSIVG-GTGLPESLEKLSFETKV 103


>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in neurons
           protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
           2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
          Length = 337

 Score = 29.5 bits (65), Expect = 0.60
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 6/107 (5%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKIL 162
             +  D+         IE  Y Q L   +++    +EK          +   + E DK+ 
Sbjct: 33  HRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVS 92

Query: 163 MRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209
             +      L + D EK+K++    K              KE  + +
Sbjct: 93  ELHQEVKNSLLNEDLEKVKNW---QKDAYHKQIMGGFKETKEAEDGF 136


>3hah_A Human pacsin1 F-BAR; pacsin,syndapin,FAP52,F-BAR, coiled coil,
           cytoplasm, endocytosis, phosphoprotein, polymorphism,
           SH3 domain; 2.77A {Homo sapiens} PDB: 3hai_A
          Length = 325

 Score = 29.3 bits (65), Expect = 0.69
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161
             +  D+         IE  YGQ L   +++    +EK          +   + E DK+
Sbjct: 36  HRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKV 94


>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
           protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
           {Homo sapiens} PDB: 3lll_A 3hah_A 3hai_A
          Length = 312

 Score = 28.6 bits (63), Expect = 0.94
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161
             +  D+         IE  Y Q L + +++    VEK          +  ++ E +++
Sbjct: 42  HRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERV 100


>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
           protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
           {Homo sapiens}
          Length = 350

 Score = 28.7 bits (63), Expect = 0.97
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161
             +  D+         IE  Y Q L + +++    VEK          +  ++ E +++
Sbjct: 42  HRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERV 100


>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related
           proteins, multiple- ligand binding, plant protein; HET:
           ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*
          Length = 155

 Score = 28.8 bits (64), Expect = 1.1
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV----RDCLKKD 197
           F      ++ +E I E D+     G++ I    +  + +  Y T  K+        L   
Sbjct: 58  FLPEVSPSYQREEITEFDESSHEIGLQVIE-GGYLSQGLSYYKTTFKLSEIEEDKTLVNV 116

Query: 198 NIHY 201
            I Y
Sbjct: 117 KISY 120


>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; 2.30A {Homo sapiens} SCOP:
           a.238.1.4
          Length = 301

 Score = 28.6 bits (63), Expect = 1.1
 Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSK------FFTHFKEYIDEVD 159
           +++     +       +E  Y + L  + +K + K                F + + EV+
Sbjct: 20  LDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVN 79

Query: 160 KILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRN 207
               +  +    L+     ++  Y   +K  R    ++     ++L N
Sbjct: 80  DFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLEN 127


>2qlv_C Nuclear protein SNF4; heterotrimer, ATP-binding, carbohydrate
           metabolism, kinase, membrane, nucleotide-binding,
           nucleus; 2.60A {Saccharomyces cerevisiae}
          Length = 315

 Score = 28.0 bits (61), Expect = 1.6
 Identities = 9/55 (16%), Positives = 18/55 (32%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209
           + +   +L++  I   PL D    +    LT    +       +     EL +  
Sbjct: 44  VKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKL 98


>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
           oxidoreductase, tricarboxylic acid cycle; 1.55A
           {Salinibacter ruber dsm 13855}
          Length = 314

 Score = 27.6 bits (61), Expect = 2.1
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 161 ILMRYGIE---GIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
            L   G+E    + L   +  ++K+   H+    D L++
Sbjct: 268 KLGAGGVEEVIEVDLDADEKAQLKTSAGHVHSNLDDLQR 306


>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
           adaptor, endocytosis, phosphoprotein; 2.40A
           {Saccharomyces cerevisiae}
          Length = 287

 Score = 27.4 bits (60), Expect = 2.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 108 MAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKD 141
           + KD   LF  + N++  Y Q L KI  +N +  
Sbjct: 58  LNKDFYLLFKELANLKRNYAQQLRKIIAENEDIT 91


>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor
           biosynthesis, transferase; 1.45A {Escherichia coli}
           SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D
           1nvi_D
          Length = 81

 Score = 27.2 bits (60), Expect = 2.7
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 89  INVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQYLEKISQKNV 138
           I VL F+ V  L+G    E+A D   +  L  ++     ++   +    +
Sbjct: 2   IKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKL 51


>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
           homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
          Length = 468

 Score = 27.3 bits (60), Expect = 2.8
 Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 5/62 (8%)

Query: 145 SKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHI-----KIVRDCLKKDNI 199
           SK   H      +      RYG+ G      D  K++             V    KK+ +
Sbjct: 49  SKALLHATHLYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKV 108

Query: 200 HY 201
            Y
Sbjct: 109 TY 110


>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal,
           alternative splicing, hydrolase, phosphoprotein,
           polymorphism, thiol protease; 2.40A {Homo sapiens}
          Length = 323

 Score = 27.2 bits (59), Expect = 3.2
 Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 3/76 (3%)

Query: 118 LIDNIENGYGQYLEKISQKNVEKD---FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTD 174
           L D I + Y +YL      +   +    F+S F+       + + +      +       
Sbjct: 49  LNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKR 108

Query: 175 FDHEKIKSYLTHIKIV 190
                    + +   +
Sbjct: 109 VRTWTRHINIFNKDYI 124


>3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET: ANP; 2.40A
           {Pyrococcus horikoshii} PDB: 3i72_A 3i73_A* 3ikj_A
           1vdz_A
          Length = 588

 Score = 26.9 bits (59), Expect = 3.4
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 16/71 (22%)

Query: 112 IAQLFTLIDNIENGY---------GQYLEKISQKNVEKDFFNSKFF-------THFKEYI 155
             +  T++  + N Y         G  LE+I++  V ++    KF        +   +  
Sbjct: 517 PEKQVTMMRVLLNFYDKTMEAINRGVPLEEIAKLPVREEIGRMKFERDVSKIRSLIDKTN 576

Query: 156 DEVDKILMRYG 166
           ++ +++  +YG
Sbjct: 577 EQFEELFKKYG 587


>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
           single-stranded DNA, isomerase/DNA complex; HET: DNA;
           2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
           2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
          Length = 659

 Score = 26.8 bits (58), Expect = 3.8
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMR 164
             L +IS+K      F         + ID+  +  +R
Sbjct: 576 SVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVR 612


>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix
           protein, transcription; 2.20A {Staphylococcus aureus}
           SCOP: a.4.5.28 a.4.5.28
          Length = 250

 Score = 26.8 bits (59), Expect = 3.9
 Identities = 6/52 (11%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 150 HFKEYIDEVDKILMRYGIE---GIPLTDFDHEKIKSYLTHIKIVRDCLKKDN 198
              E +   D+I+ ++ +       +   D ++  + + +    ++ +KK  
Sbjct: 103 KIAERVTLFDQIIKQFNLADQSESQMIPKDSKEFLNLMMYTMYFKNIIKKHL 154


>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila
           melanogaster} SCOP: b.34.14.1
          Length = 143

 Score = 26.8 bits (59), Expect = 4.2
 Identities = 6/36 (16%), Positives = 17/36 (47%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV 190
           I+ +++  ++  I      D+    ++ +L  I +V
Sbjct: 8   IEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVV 43


>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
           HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
           d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
           1uxi_A*
          Length = 309

 Score = 26.5 bits (58), Expect = 5.1
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           I  +PL + +   + +    ++   D LK 
Sbjct: 279 ILELPLNEEEMALLNASAKAVRATLDTLKS 308


>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
           {Saccharomyces cerevisiae} SCOP: e.15.1.1
          Length = 223

 Score = 26.2 bits (58), Expect = 5.1
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 116 FTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDF 175
             L    E   G +   +   + +   F   FF  F + + E         + GI + +F
Sbjct: 35  VDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGG-----PLNGIEIKEF 89

Query: 176 ---DHEKIKSYLTHIK 188
              D  K+  Y    K
Sbjct: 90  SRCDFTKMFDYFQLQK 105


>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide
           complex, nucleotide binding fold, structural genomics,
           PSI; HET: TYD; 1.70A
           {Methanothermobacterthermautotrophicus} SCOP: c.68.1.6
          Length = 295

 Score = 26.4 bits (58), Expect = 5.6
 Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 111 DIAQLFTLIDNIE-NGYGQYLEKISQKN 137
               +  + + +E   YG+YL  +++ N
Sbjct: 265 TREDVLEMAEKLEKTDYGKYLRDLAEGN 292


>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
           genomics, PSI, protein structure initiative; 1.12A
           {Mycobacterium tuberculosis} SCOP: c.47.1.10
          Length = 136

 Score = 26.3 bits (57), Expect = 5.8
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 143 FNSKFFTHFKEYIDEVDKILMRYGIEGIPLT 173
           F SK+  +F    D    I  RY +   P  
Sbjct: 73  FVSKYNLNFTNLNDADGVIWARYNVPWQPAF 103


>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
           phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
           horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3ikj_A 1vdz_A
          Length = 588

 Score = 26.2 bits (57), Expect = 5.9
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 16/71 (22%)

Query: 112 IAQLFTLIDNIENGY---------GQYLEKISQKNVEKDFFNSKFF-------THFKEYI 155
             +  T++  + N Y         G  LE+I++  V ++    KF        +   +  
Sbjct: 517 PEKQVTMMRVLLNFYDKTMEAINRGVPLEEIAKLPVREEIGRMKFERDVSKIRSLIDKTN 576

Query: 156 DEVDKILMRYG 166
           ++ +++  +YG
Sbjct: 577 EQFEELFKKYG 587


>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
          Length = 153

 Score = 26.0 bits (57), Expect = 6.4
 Identities = 5/40 (12%), Positives = 14/40 (35%)

Query: 132 KISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIP 171
               + + +        +  K   + V ++  +Y I  +P
Sbjct: 48  AQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVP 87


>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
           cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
           {Lactobacillus casei} PDB: 2zqy_A 1llc_A*
          Length = 326

 Score = 25.9 bits (56), Expect = 7.2
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 161 ILMRYGIE---GIPLTDFDHEKIKSYLTHIK-IVRDCLKKDNI 199
           ++ R GI+    IPLTD + E ++   + +K ++ D   K++I
Sbjct: 280 VINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDAFAKNDI 322


>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA;
           1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X*
           1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A*
           1ecl_A 1cy9_A* 1cyy_A*
          Length = 592

 Score = 25.9 bits (56), Expect = 7.8
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDK 160
             L++++    E       FF+ F + +D+ +K
Sbjct: 548 NNLDQVANHEAEWKAVLDHFFSDFTQQLDKAEK 580


>1b8p_A Protein (malate dehydrogenase); 1.90A {Aquaspirillum arcticum}
           SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A
          Length = 329

 Score = 25.6 bits (55), Expect = 7.9
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           ++G+ +  F  E+I   L  +   ++ ++ 
Sbjct: 297 VQGLSIDAFSQERINVTLNELLEEQNGVQH 326


>3ktb_A Arsenical resistance operon trans-acting repressor;
           alpha-beta-alpha sandwich, helix-turn-helix, structural
           genomics, PSI-2; 2.10A {Bacteroides vulgatus atcc 8482}
          Length = 106

 Score = 25.9 bits (57), Expect = 8.1
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 130 LEKISQKNVEKDFFNSKFFTH----FKEYIDEVDKILMRYGIEGIPLTDFDHEKIKS--Y 183
           +E + ++ +     N          +      V+  L ++G + +P+T  D E   S  Y
Sbjct: 36  IESLKKQGIIVTRHN---LRDEPQVYVSN-KTVNDFLQKHGADALPITLVDGEIAVSQTY 91

Query: 184 LT 185
            T
Sbjct: 92  PT 93


>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
           protein complex, cytoskeletal protein; HET: GTP; 2.5A
           {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
           2btq_A*
          Length = 473

 Score = 25.7 bits (56), Expect = 8.9
 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 3/51 (5%)

Query: 117 TLIDNIENGYGQYLEK---ISQKNVEKDFFNSKFFTHFKEYIDEVDKILMR 164
           ++IDN++   G        IS+       F   +    +E + EV   L  
Sbjct: 76  SVIDNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDY 126


>3h9m_A P-aminobenzoate synthetase, component I; para-aminobenzoate
           synthetase, cytophaga hutchinsonii,YP_678417.1,
           CHU_1808; HET: PGE; 1.57A {Cytophaga hutchinsonii atcc
           33406}
          Length = 436

 Score = 25.5 bits (55), Expect = 9.0
 Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 3/94 (3%)

Query: 71  WFFGEKFSYDV--SIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQ 128
           W F    SYD   S++ +        +F  A    P          +     +  +   +
Sbjct: 81  WIFV-FASYDGKNSVEQLHTSKEAGIAFAAATFFIPEHVWEIQPDGILIHKGSGSSLVTE 139

Query: 129 YLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKIL 162
                    V++     K     + Y +  D++ 
Sbjct: 140 IQHAEPSTPVQQSDIFVKQVVSKESYFNAFDELQ 173


>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
           oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
           jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
          Length = 313

 Score = 25.4 bits (55), Expect = 9.7
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           +  I L   +    +     IK   + +K 
Sbjct: 283 VVSIELDKDEIIAFRKSAEIIKKYCEEVKN 312


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.327    0.143    0.450 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,006,003
Number of extensions: 94896
Number of successful extensions: 621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 95
Length of query: 214
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 126
Effective length of database: 3,559,758
Effective search space: 448529508
Effective search space used: 448529508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)