RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62] (214 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.0 bits (88), Expect = 0.001 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 30/97 (30%) Query: 71 WFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQ-- 128 W E F + K AI VL F V PN + I + D++EN G Sbjct: 289 W---ESF-FVSVRK---AITVLFFIGVRCYEAYPNTSLPPSILE-----DSLENNEGVPS 336 Query: 129 YLEKI---SQKNVEKDFFNSKFFTHFKEYIDEVDKIL 162 + I +Q+ V+ Y+++ + L Sbjct: 337 PMLSISNLTQEQVQD-------------YVNKTNSHL 360 Score = 27.6 bits (61), Expect = 2.3 Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 50/138 (36%) Query: 77 FSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKD-----IAQLFTLIDNIENGYGQYLE 131 V + L F +L P A D A+L G++L Sbjct: 18 HVLLVPTASFFIASQLQEQF-NKILPEPTEGFAADDEPTTPAEL----------VGKFLG 66 Query: 132 KISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVR 191 +S VE ++ D+V + LT+F+ Sbjct: 67 YVSSL-VEPS--------KVGQF-DQVLNLC---------LTEFE--------------N 93 Query: 192 DCLKKDNIH-YAKELRND 208 L+ ++IH A +L + Sbjct: 94 CYLEGNDIHALAAKLLQE 111 >3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486 Score = 32.3 bits (72), Expect = 0.072 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 3/59 (5%) Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161 + D+ IE Y Q L + +++ VEK + ++ E +++ Sbjct: 35 HRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERV 93 >3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165 Score = 32.1 bits (73), Expect = 0.094 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 10/66 (15%) Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV---RDCLK 195 F + T+ DE+D EG L D I+ + +K+ Sbjct: 65 FVDGHPLTYMLHKFDEIDAANFYCKYTLFEGDVLRD----NIEKVVYEVKLEAVGGGSKG 120 Query: 196 KDNIHY 201 K + Y Sbjct: 121 KITVTY 126 >2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens} Length = 276 Score = 31.4 bits (70), Expect = 0.14 Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 8/105 (7%) Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRY 165 K++A IE Y + + K+++ + F + + +K+ Sbjct: 31 QISTKELADFVRERATIEEAYSRSMTKLAKSASNYSQLGT-FAPVWDVFKTSTEKL---- 85 Query: 166 GIEGIPLTDFDHEKIKSYLT---HIKIVRDCLKKDNIHYAKELRN 207 + L E IK K++ + ++ Sbjct: 86 ANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQT 130 >2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, PSI-2, protein structure initiative; 2.00A {Caulobacter crescentus CB15} Length = 417 Score = 31.3 bits (70), Expect = 0.16 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 2/111 (1%) Query: 68 FAYWFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYG 127 A + KI A + + + P+ E + L D ++ Sbjct: 254 KAVYDHPRNLDDARLKKIADAGGAICINSIYLTDTTPSPERKAALEALGRAPD-MKTATP 312 Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPL-TDFDH 177 + ++ + K D + F Y+ + +L G +G+ + D+D Sbjct: 313 EAVKAYADKRAAIDKAHPAARGDFDLYMKSMLHVLKVAGPKGVCVGADWDG 363 >1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A Length = 159 Score = 31.3 bits (71), Expect = 0.17 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 7/52 (13%) Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV 190 F + + K ID +DK Y IEG L D ++ K+V Sbjct: 58 FGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGD----TLEKISYETKLV 105 >2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR- 10 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Length = 158 Score = 31.0 bits (70), Expect = 0.20 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 11/61 (18%) Query: 148 FTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV----RDCLKKDNIH 200 + I+ +D+ + Y + G+ L D I+ K+V + K I Sbjct: 64 SKYVLHKIEAIDEANLGYNYSIVGGVGLPD----TIEKISFETKLVEGANGGSIGKVTIK 119 Query: 201 Y 201 Sbjct: 120 I 120 >2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201 Score = 30.7 bits (69), Expect = 0.25 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV 190 F +F +KE VD ++ I + + Y+ I +V Sbjct: 84 FVPGEFPHEYKEKFILVDNEHRLKKVQMIE-GGYLDLGVTYYMDTIHVV 131 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 30.2 bits (67), Expect = 0.40 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 22/101 (21%) Query: 75 EKFSYDV----SIKI--VLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQ 128 E+F Y + ++K V A+++ F F G I + D L+ I E+ Y + Sbjct: 1420 EQFEYVLYPSKTLKTDGVRAVSITSFGF--GQKGGQAIVVHPDY--LYGAI--TEDRYNE 1473 Query: 129 YLEKIS--QKNVEKDFFN----SKFFTHFKE---YIDEVDK 160 Y+ K+S +K+ K F N +K F KE Y DE+++ Sbjct: 1474 YVAKVSAREKSAYKFFHNGMIYNKLFVS-KEHAPYTDELEE 1513 >2vjg_A Major allergen DAU C 1; major carrot allergen, pathogenesis-related protein, plant defense; HET: P4C PG4 PGE; 2.70A {Daucus carota} PDB: 2wql_A* 2bk0_A Length = 154 Score = 29.9 bits (67), Expect = 0.42 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 11/67 (16%) Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIVR----DCL 194 T D V+K + Y I+G D I+S TH+ +V + Sbjct: 58 LPEGSPITTMTVRTDAVNKEALSYDSTVIDG----DILLGFIESIETHMVVVPTADGGSI 113 Query: 195 KKDNIHY 201 K + Sbjct: 114 TKTTAIF 120 >3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster} Length = 290 Score = 29.8 bits (66), Expect = 0.50 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161 ++ D+ QL +IE GY + L S+K +EK +K + E ++I Sbjct: 21 YKLCNDLQQLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERI 79 >2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4 Length = 305 Score = 29.8 bits (66), Expect = 0.53 Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 6/108 (5%) Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSK------FFTHFKEYIDEVD 159 I++ + + IE Y + L +S+K K + F ++E++ Sbjct: 27 IDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMN 86 Query: 160 KILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRN 207 ++ + + + Y+ +K R D + + Sbjct: 87 DYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIET 134 >1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Length = 157 Score = 29.5 bits (66), Expect = 0.54 Identities = 5/48 (10%), Positives = 15/48 (31%), Gaps = 1/48 (2%) Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKI 189 + + +D +D+ + Y + E ++ K+ Sbjct: 57 ANEGDKTSFVLQKVDAIDEANLGYDYSIVG-GTGLPESLEKLSFETKV 103 >2x3v_A Syndapin I, protein kinase C and casein kinase substrate in neurons protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A Length = 337 Score = 29.5 bits (65), Expect = 0.60 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 6/107 (5%) Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKIL 162 + D+ IE Y Q L +++ +EK + + E DK+ Sbjct: 33 HRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVS 92 Query: 163 MRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209 + L + D EK+K++ K KE + + Sbjct: 93 ELHQEVKNSLLNEDLEKVKNW---QKDAYHKQIMGGFKETKEAEDGF 136 >3hah_A Human pacsin1 F-BAR; pacsin,syndapin,FAP52,F-BAR, coiled coil, cytoplasm, endocytosis, phosphoprotein, polymorphism, SH3 domain; 2.77A {Homo sapiens} PDB: 3hai_A Length = 325 Score = 29.3 bits (65), Expect = 0.69 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 3/59 (5%) Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161 + D+ IE YGQ L +++ +EK + + E DK+ Sbjct: 36 HRLCNDLMNCVQERAKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKV 94 >3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3lll_A 3hah_A 3hai_A Length = 312 Score = 28.6 bits (63), Expect = 0.94 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 3/59 (5%) Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161 + D+ IE Y Q L + +++ VEK + ++ E +++ Sbjct: 42 HRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERV 100 >3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens} Length = 350 Score = 28.7 bits (63), Expect = 0.97 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 3/59 (5%) Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQK---NVEKDFFNSKFFTHFKEYIDEVDKI 161 + D+ IE Y Q L + +++ VEK + ++ E +++ Sbjct: 42 HRLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERV 100 >2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155 Score = 28.8 bits (64), Expect = 1.1 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV----RDCLKKD 197 F ++ +E I E D+ G++ I + + + Y T K+ L Sbjct: 58 FLPEVSPSYQREEITEFDESSHEIGLQVIE-GGYLSQGLSYYKTTFKLSEIEEDKTLVNV 116 Query: 198 NIHY 201 I Y Sbjct: 117 KISY 120 >2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4 Length = 301 Score = 28.6 bits (63), Expect = 1.1 Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 6/108 (5%) Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSK------FFTHFKEYIDEVD 159 +++ + +E Y + L + +K + K F + + EV+ Sbjct: 20 LDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVN 79 Query: 160 KILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRN 207 + + L+ ++ Y +K R ++ ++L N Sbjct: 80 DFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLEN 127 >2qlv_C Nuclear protein SNF4; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 315 Score = 28.0 bits (61), Expect = 1.6 Identities = 9/55 (16%), Positives = 18/55 (32%) Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRNDW 209 + + +L++ I PL D + LT + + EL + Sbjct: 44 VKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKL 98 >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber dsm 13855} Length = 314 Score = 27.6 bits (61), Expect = 2.1 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 3/39 (7%) Query: 161 ILMRYGIE---GIPLTDFDHEKIKSYLTHIKIVRDCLKK 196 L G+E + L + ++K+ H+ D L++ Sbjct: 268 KLGAGGVEEVIEVDLDADEKAQLKTSAGHVHSNLDDLQR 306 >3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae} Length = 287 Score = 27.4 bits (60), Expect = 2.6 Identities = 11/34 (32%), Positives = 17/34 (50%) Query: 108 MAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKD 141 + KD LF + N++ Y Q L KI +N + Sbjct: 58 LNKDFYLLFKELANLKRNYAQQLRKIIAENEDIT 91 >1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D Length = 81 Score = 27.2 bits (60), Expect = 2.7 Identities = 11/50 (22%), Positives = 21/50 (42%) Query: 89 INVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQYLEKISQKNV 138 I VL F+ V L+G E+A D + L ++ ++ + + Sbjct: 2 IKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKL 51 >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 Score = 27.3 bits (60), Expect = 2.8 Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 5/62 (8%) Query: 145 SKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHI-----KIVRDCLKKDNI 199 SK H + RYG+ G D K++ V KK+ + Sbjct: 49 SKALLHATHLYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKV 108 Query: 200 HY 201 Y Sbjct: 109 TY 110 >3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323 Score = 27.2 bits (59), Expect = 3.2 Identities = 9/76 (11%), Positives = 22/76 (28%), Gaps = 3/76 (3%) Query: 118 LIDNIENGYGQYLEKISQKNVEKD---FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTD 174 L D I + Y +YL + + F+S F+ + + + + Sbjct: 49 LNDVIIDFYLKYLILEKASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKR 108 Query: 175 FDHEKIKSYLTHIKIV 190 + + + Sbjct: 109 VRTWTRHINIFNKDYI 124 >3i4l_A A-type ATP synthase catalytic subunit A; hydrolase; HET: ANP; 2.40A {Pyrococcus horikoshii} PDB: 3i72_A 3i73_A* 3ikj_A 1vdz_A Length = 588 Score = 26.9 bits (59), Expect = 3.4 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 16/71 (22%) Query: 112 IAQLFTLIDNIENGY---------GQYLEKISQKNVEKDFFNSKFF-------THFKEYI 155 + T++ + N Y G LE+I++ V ++ KF + + Sbjct: 517 PEKQVTMMRVLLNFYDKTMEAINRGVPLEEIAKLPVREEIGRMKFERDVSKIRSLIDKTN 576 Query: 156 DEVDKILMRYG 166 ++ +++ +YG Sbjct: 577 EQFEELFKKYG 587 >1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A* Length = 659 Score = 26.8 bits (58), Expect = 3.8 Identities = 8/37 (21%), Positives = 14/37 (37%) Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMR 164 L +IS+K F + ID+ + +R Sbjct: 576 SVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVR 612 >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Length = 250 Score = 26.8 bits (59), Expect = 3.9 Identities = 6/52 (11%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Query: 150 HFKEYIDEVDKILMRYGIE---GIPLTDFDHEKIKSYLTHIKIVRDCLKKDN 198 E + D+I+ ++ + + D ++ + + + ++ +KK Sbjct: 103 KIAERVTLFDQIIKQFNLADQSESQMIPKDSKEFLNLMMYTMYFKNIIKKHL 154 >1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1 Length = 143 Score = 26.8 bits (59), Expect = 4.2 Identities = 6/36 (16%), Positives = 17/36 (47%) Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV 190 I+ +++ ++ I D+ ++ +L I +V Sbjct: 8 IEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVV 43 >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309 Score = 26.5 bits (58), Expect = 5.1 Identities = 6/30 (20%), Positives = 13/30 (43%) Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196 I +PL + + + + ++ D LK Sbjct: 279 ILELPLNEEEMALLNASAKAVRATLDTLKS 308 >1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1 Length = 223 Score = 26.2 bits (58), Expect = 5.1 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 8/76 (10%) Query: 116 FTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDF 175 L E G + + + + F FF F + + E + GI + +F Sbjct: 35 VDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGG-----PLNGIEIKEF 89 Query: 176 ---DHEKIKSYLTHIK 188 D K+ Y K Sbjct: 90 SRCDFTKMFDYFQLQK 105 >1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold, structural genomics, PSI; HET: TYD; 1.70A {Methanothermobacterthermautotrophicus} SCOP: c.68.1.6 Length = 295 Score = 26.4 bits (58), Expect = 5.6 Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Query: 111 DIAQLFTLIDNIE-NGYGQYLEKISQKN 137 + + + +E YG+YL +++ N Sbjct: 265 TREDVLEMAEKLEKTDYGKYLRDLAEGN 292 >1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136 Score = 26.3 bits (57), Expect = 5.8 Identities = 9/31 (29%), Positives = 12/31 (38%) Query: 143 FNSKFFTHFKEYIDEVDKILMRYGIEGIPLT 173 F SK+ +F D I RY + P Sbjct: 73 FVSKYNLNFTNLNDADGVIWARYNVPWQPAF 103 >3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3ikj_A 1vdz_A Length = 588 Score = 26.2 bits (57), Expect = 5.9 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 16/71 (22%) Query: 112 IAQLFTLIDNIENGY---------GQYLEKISQKNVEKDFFNSKFF-------THFKEYI 155 + T++ + N Y G LE+I++ V ++ KF + + Sbjct: 517 PEKQVTMMRVLLNFYDKTMEAINRGVPLEEIAKLPVREEIGRMKFERDVSKIRSLIDKTN 576 Query: 156 DEVDKILMRYG 166 ++ +++ +YG Sbjct: 577 EQFEELFKKYG 587 >2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153 Score = 26.0 bits (57), Expect = 6.4 Identities = 5/40 (12%), Positives = 14/40 (35%) Query: 132 KISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIP 171 + + + + K + V ++ +Y I +P Sbjct: 48 AQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVP 87 >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 1llc_A* Length = 326 Score = 25.9 bits (56), Expect = 7.2 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 4/43 (9%) Query: 161 ILMRYGIE---GIPLTDFDHEKIKSYLTHIK-IVRDCLKKDNI 199 ++ R GI+ IPLTD + E ++ + +K ++ D K++I Sbjct: 280 VINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDAFAKNDI 322 >1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X* 1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A* 1ecl_A 1cy9_A* 1cyy_A* Length = 592 Score = 25.9 bits (56), Expect = 7.8 Identities = 7/33 (21%), Positives = 16/33 (48%) Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDK 160 L++++ E FF+ F + +D+ +K Sbjct: 548 NNLDQVANHEAEWKAVLDHFFSDFTQQLDKAEK 580 >1b8p_A Protein (malate dehydrogenase); 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329 Score = 25.6 bits (55), Expect = 7.9 Identities = 5/30 (16%), Positives = 15/30 (50%) Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196 ++G+ + F E+I L + ++ ++ Sbjct: 297 VQGLSIDAFSQERINVTLNELLEEQNGVQH 326 >3ktb_A Arsenical resistance operon trans-acting repressor; alpha-beta-alpha sandwich, helix-turn-helix, structural genomics, PSI-2; 2.10A {Bacteroides vulgatus atcc 8482} Length = 106 Score = 25.9 bits (57), Expect = 8.1 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 10/62 (16%) Query: 130 LEKISQKNVEKDFFNSKFFTH----FKEYIDEVDKILMRYGIEGIPLTDFDHEKIKS--Y 183 +E + ++ + N + V+ L ++G + +P+T D E S Y Sbjct: 36 IESLKKQGIIVTRHN---LRDEPQVYVSN-KTVNDFLQKHGADALPITLVDGEIAVSQTY 91 Query: 184 LT 185 T Sbjct: 92 PT 93 >2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein complex, cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Score = 25.7 bits (56), Expect = 8.9 Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 3/51 (5%) Query: 117 TLIDNIENGYGQYLEK---ISQKNVEKDFFNSKFFTHFKEYIDEVDKILMR 164 ++IDN++ G IS+ F + +E + EV L Sbjct: 76 SVIDNVKATSGSLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDY 126 >3h9m_A P-aminobenzoate synthetase, component I; para-aminobenzoate synthetase, cytophaga hutchinsonii,YP_678417.1, CHU_1808; HET: PGE; 1.57A {Cytophaga hutchinsonii atcc 33406} Length = 436 Score = 25.5 bits (55), Expect = 9.0 Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 3/94 (3%) Query: 71 WFFGEKFSYDV--SIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQ 128 W F SYD S++ + +F A P + + + + Sbjct: 81 WIFV-FASYDGKNSVEQLHTSKEAGIAFAAATFFIPEHVWEIQPDGILIHKGSGSSLVTE 139 Query: 129 YLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKIL 162 V++ K + Y + D++ Sbjct: 140 IQHAEPSTPVQQSDIFVKQVVSKESYFNAFDELQ 173 >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313 Score = 25.4 bits (55), Expect = 9.7 Identities = 5/30 (16%), Positives = 10/30 (33%) Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196 + I L + + IK + +K Sbjct: 283 VVSIELDKDEIIAFRKSAEIIKKYCEEVKN 312 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.327 0.143 0.450 Gapped Lambda K H 0.267 0.0626 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,006,003 Number of extensions: 94896 Number of successful extensions: 621 Number of sequences better than 10.0: 1 Number of HSP's gapped: 616 Number of HSP's successfully gapped: 95 Length of query: 214 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 126 Effective length of database: 3,559,758 Effective search space: 448529508 Effective search space used: 448529508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 55 (25.2 bits)