RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781163|ref|YP_003065576.1| hypothetical protein
CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62]
         (214 letters)



>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10
           {Yellow lupine (Lupinus luteus) [TaxId: 3873]}
          Length = 155

 Score = 32.2 bits (73), Expect = 0.033
 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 11/70 (15%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV----RDCL 194
             +    +     +D +D+  + Y    I G  L +     ++      KI+       +
Sbjct: 57  AIHDGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDE----SLEKISYESKILPGPDGGSI 112

Query: 195 KKDNIHYAKE 204
            K N+ +  +
Sbjct: 113 GKINVKFHTK 122


>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10
           {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]}
          Length = 147

 Score = 31.9 bits (72), Expect = 0.039
 Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV----RDCLKKD 197
                  +   + +D +D+  + Y    +       E ++      K+V       + K 
Sbjct: 57  ANEGDKTSFVLQKVDAIDEANLGYDYSIVG-GTGLPESLEKLSFETKVVAGSGGGSISKV 115

Query: 198 NIHY 201
            + +
Sbjct: 116 TLKF 119


>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10
           {Yellow lupine (Lupinus luteus) [TaxId: 3873]}
          Length = 157

 Score = 31.4 bits (71), Expect = 0.059
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 11/67 (16%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIVR----DCL 194
                   +    I+ VD+  +RY    + G+ L D     I+      K+V       +
Sbjct: 57  LIEGGETKYVLHKIEAVDEANLRYNYSIVGGVGLPD----TIEKISFETKLVEGANGGSI 112

Query: 195 KKDNIHY 201
            K  I  
Sbjct: 113 GKVTIKI 119


>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium
           graveolens) [TaxId: 4045]}
          Length = 153

 Score = 31.0 bits (70), Expect = 0.078
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV 190
             +    T     ID V+K  + +    I+G  L       I+S   H+ +V
Sbjct: 57  LPDGGPITTMTLRIDGVNKEALTFDYSVIDGDILLG----FIESIENHVVLV 104


>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white
           birch (Betula pendula), Bet v 1-l [TaxId: 3505]}
          Length = 159

 Score = 30.6 bits (69), Expect = 0.091
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 148 FTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIVRD----CLKKDNIH 200
           F + K+ +DEVD    +Y    IEG P+ D     ++     IKIV      C+ K +  
Sbjct: 64  FKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGGCVLKISNK 119

Query: 201 Y 201
           Y
Sbjct: 120 Y 120


>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry
           (Prunus avium), pru av 1 [TaxId: 42229]}
          Length = 159

 Score = 29.1 bits (65), Expect = 0.27
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 148 FTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV 190
           + + K  ID +DK    Y    IEG  L D     ++      K+V
Sbjct: 64  YGYVKHKIDSIDKENYSYSYTLIEGDALGD----TLEKISYETKLV 105


>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
           [TaxId: 562]}
          Length = 620

 Score = 27.2 bits (59), Expect = 0.94
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIP 171
             L +IS+K      F         + ID+  +  +R    GI 
Sbjct: 576 SVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVR-QFRGIV 618


>d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 123

 Score = 27.5 bits (61), Expect = 0.96
 Identities = 6/36 (16%), Positives = 17/36 (47%)

Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV 190
           I+ +++  ++  I      D+    ++ +L  I +V
Sbjct: 8   IEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVV 43


>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId:
           287]}
          Length = 292

 Score = 27.4 bits (61), Expect = 1.0
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 111 DIAQLFTLIDNIE-NGYGQYLEKISQKNV 138
           D AQL  L   +  NGYGQYL+++  + V
Sbjct: 263 DAAQLEKLAAPLAKNGYGQYLKRLLTETV 291


>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 288

 Score = 27.5 bits (60), Expect = 1.0
 Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEK------DFFNSKFFTHFKEYIDEVD 159
           I++ +   +       IE  Y + L  +S+K   K      + +       F   ++E++
Sbjct: 22  IDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMN 81

Query: 160 KILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRN 207
               ++ +    +       +  Y+  +K  R     D     + +  
Sbjct: 82  DYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIET 129


>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus
           thermophilus [TaxId: 274]}
          Length = 173

 Score = 26.6 bits (58), Expect = 1.6
 Identities = 4/29 (13%), Positives = 15/29 (51%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
           +EG+ + +F  ++++     +    + +K
Sbjct: 140 VEGLEINEFARKRMEITAQELLDEMEQVK 168


>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 279

 Score = 26.3 bits (57), Expect = 1.8
 Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 6/108 (5%)

Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSK------FFTHFKEYIDEVD 159
           +++     +       +E  Y + L  + +K + K                F + + EV+
Sbjct: 13  LDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVN 72

Query: 160 KILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRN 207
               +  +    L+     ++  Y   +K  R    ++     ++L N
Sbjct: 73  DFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLEN 120


>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma
           gondii [TaxId: 5811]}
          Length = 174

 Score = 26.4 bits (57), Expect = 2.2
 Identities = 1/30 (3%), Positives = 12/30 (40%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           +  + L + + ++ +  +  +  +   +  
Sbjct: 141 VIELELNEEEKKQFQKSVDDVMALNKAVAA 170


>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
           DNA-binding fragment {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 223

 Score = 26.2 bits (58), Expect = 2.3
 Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 116 FTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDF 175
             L    E   G +   +   + +   F   FF  F + + E    L    I+     DF
Sbjct: 35  VDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDF 94

Query: 176 DHEKIKSYLTHIKIVRDCLKK 196
              K+  Y    K  +  L  
Sbjct: 95  T--KMFDYFQLQKEQKKQLTS 113


>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 295

 Score = 26.0 bits (57), Expect = 2.7
 Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 111 DIAQLFTLIDNIE-NGYGQYLEKISQKN 137
               +  + + +E   YG+YL  +++ N
Sbjct: 265 TREDVLEMAEKLEKTDYGKYLRDLAEGN 292


>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD
           {Escherichia coli [TaxId: 562]}
          Length = 81

 Score = 25.7 bits (56), Expect = 2.8
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 89  INVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQYLEKISQKNV 138
           I VL F+ V  L+G    E+A D   +  L  ++     ++   +    +
Sbjct: 2   IKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKL 51


>d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 233

 Score = 25.9 bits (56), Expect = 2.9
 Identities = 20/155 (12%), Positives = 38/155 (24%), Gaps = 3/155 (1%)

Query: 60  LCLGFFTLFAYWFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQ-LFTL 118
           + +   T           SY  +I++    +       +           + I   +  L
Sbjct: 49  IGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERL 108

Query: 119 IDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHE 178
              I                             +     +D+  +        L D D E
Sbjct: 109 RGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVE 168

Query: 179 KIKSYLTHI-KIVRDCLKKDNIH-YAKELRNDWIG 211
              S  T+I  + RD      +  +   LR   +G
Sbjct: 169 IDCSSGTYIRALARDLGDALGVGGHVTALRRTRVG 203


>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum
           arcticum [TaxId: 87645]}
          Length = 171

 Score = 25.6 bits (55), Expect = 3.5
 Identities = 5/30 (16%), Positives = 15/30 (50%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           ++G+ +  F  E+I   L  +   ++ ++ 
Sbjct: 139 VQGLSIDAFSQERINVTLNELLEEQNGVQH 168


>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 591

 Score = 25.6 bits (55), Expect = 3.6
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDK 160
             L++++    E       FF+ F + +D+ +K
Sbjct: 547 NNLDQVANHEAEWKAVLDHFFSDFTQQLDKAEK 579


>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus
           aurantiacus [TaxId: 1108]}
          Length = 164

 Score = 25.1 bits (54), Expect = 4.3
 Identities = 6/31 (19%), Positives = 13/31 (41%)

Query: 165 YGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
             I  +PL + +   + +    ++   D LK
Sbjct: 134 EKILELPLNEEEMALLNASAKAVRATLDTLK 164


>d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli
           [TaxId: 562]}
          Length = 209

 Score = 24.8 bits (53), Expect = 5.2
 Identities = 6/55 (10%), Positives = 16/55 (29%)

Query: 147 FFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHY 201
             T     + E+  +L  +G++ +  TD   +  +              +     
Sbjct: 18  LATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKV 72


>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 168

 Score = 24.8 bits (53), Expect = 5.4
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196
           +  I L   +    +     IK   + +K 
Sbjct: 138 VVSIELDKDEIIAFRKSAEIIKKYCEEVKN 167


>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum
           (Sorghum vulgare), chloroplast [TaxId: 4558]}
          Length = 188

 Score = 24.6 bits (53), Expect = 6.8
 Identities = 6/29 (20%), Positives = 11/29 (37%)

Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195
              +   DF  E+IK     +   + C+ 
Sbjct: 142 ATDVSNDDFLWERIKKSEAELLAEKKCVA 170


>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei
           [TaxId: 5702]}
          Length = 144

 Score = 24.5 bits (52), Expect = 7.3
 Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 135 QKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLT---DFDHEKIKSYLTHIKIVR 191
           + +    +    +     +    V ++   +G+E IP     + D   I       +++ 
Sbjct: 74  ESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIE 133

Query: 192 DCLKK 196
           D    
Sbjct: 134 DPDGA 138


>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 221

 Score = 24.4 bits (52), Expect = 7.5
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 118 LIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDH 177
           L D I   + +Y+EK +   V    FNS F+T+  E   +  +  M+     I   D   
Sbjct: 49  LNDTIIEFFMKYIEKSTPNTV---AFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIF 105

Query: 178 EKIKSYLTH 186
             I    +H
Sbjct: 106 TPINLNQSH 114


>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 134

 Score = 24.2 bits (51), Expect = 8.0
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLT 173
            F SK+  +F    D    I  RY +   P  
Sbjct: 72  SFVSKYNLNFTNLNDADGVIWARYNVPWQPAF 103


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.450 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 883,467
Number of extensions: 42891
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 63
Length of query: 214
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 132
Effective length of database: 1,281,736
Effective search space: 169189152
Effective search space used: 169189152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)