RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781163|ref|YP_003065576.1| hypothetical protein CLIBASIA_05350 [Candidatus Liberibacter asiaticus str. psy62] (214 letters) >d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155 Score = 32.2 bits (73), Expect = 0.033 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 11/70 (15%) Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV----RDCL 194 + + +D +D+ + Y I G L + ++ KI+ + Sbjct: 57 AIHDGHTSFVLHKLDAIDEANLTYNYSIIGGEGLDE----SLEKISYESKILPGPDGGSI 112 Query: 195 KKDNIHYAKE 204 K N+ + + Sbjct: 113 GKINVKFHTK 122 >d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147 Score = 31.9 bits (72), Expect = 0.039 Identities = 7/64 (10%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV----RDCLKKD 197 + + +D +D+ + Y + E ++ K+V + K Sbjct: 57 ANEGDKTSFVLQKVDAIDEANLGYDYSIVG-GTGLPESLEKLSFETKVVAGSGGGSISKV 115 Query: 198 NIHY 201 + + Sbjct: 116 TLKF 119 >d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157 Score = 31.4 bits (71), Expect = 0.059 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 11/67 (16%) Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIVR----DCL 194 + I+ VD+ +RY + G+ L D I+ K+V + Sbjct: 57 LIEGGETKYVLHKIEAVDEANLRYNYSIVGGVGLPD----TIEKISFETKLVEGANGGSI 112 Query: 195 KKDNIHY 201 K I Sbjct: 113 GKVTIKI 119 >d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153 Score = 31.0 bits (70), Expect = 0.078 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 7/52 (13%) Query: 142 FFNSKFFTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV 190 + T ID V+K + + I+G L I+S H+ +V Sbjct: 57 LPDGGPITTMTLRIDGVNKEALTFDYSVIDGDILLG----FIESIENHVVLV 104 >d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159 Score = 30.6 bits (69), Expect = 0.091 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%) Query: 148 FTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIVRD----CLKKDNIH 200 F + K+ +DEVD +Y IEG P+ D ++ IKIV C+ K + Sbjct: 64 FKYVKDRVDEVDHTNFKYNYSVIEGGPVGD----TLEKISNEIKIVATPDGGCVLKISNK 119 Query: 201 Y 201 Y Sbjct: 120 Y 120 >d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159 Score = 29.1 bits (65), Expect = 0.27 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 7/46 (15%) Query: 148 FTHFKEYIDEVDKILMRYG---IEGIPLTDFDHEKIKSYLTHIKIV 190 + + K ID +DK Y IEG L D ++ K+V Sbjct: 64 YGYVKHKIDSIDKENYSYSYTLIEGDALGD----TLEKISYETKLV 105 >d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli [TaxId: 562]} Length = 620 Score = 27.2 bits (59), Expect = 0.94 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%) Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIP 171 L +IS+K F + ID+ + +R GI Sbjct: 576 SVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVR-QFRGIV 618 >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123 Score = 27.5 bits (61), Expect = 0.96 Identities = 6/36 (16%), Positives = 17/36 (47%) Query: 155 IDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIV 190 I+ +++ ++ I D+ ++ +L I +V Sbjct: 8 IEYLERFSLKAKINNTTNLDYSRRFLEPFLRGINVV 43 >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 Score = 27.4 bits (61), Expect = 1.0 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Query: 111 DIAQLFTLIDNIE-NGYGQYLEKISQKNV 138 D AQL L + NGYGQYL+++ + V Sbjct: 263 DAAQLEKLAAPLAKNGYGQYLKRLLTETV 291 >d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Score = 27.5 bits (60), Expect = 1.0 Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 6/108 (5%) Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEK------DFFNSKFFTHFKEYIDEVD 159 I++ + + IE Y + L +S+K K + + F ++E++ Sbjct: 22 IDILEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMN 81 Query: 160 KILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRN 207 ++ + + + Y+ +K R D + + Sbjct: 82 DYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIET 129 >d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173 Score = 26.6 bits (58), Expect = 1.6 Identities = 4/29 (13%), Positives = 15/29 (51%) Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195 +EG+ + +F ++++ + + +K Sbjct: 140 VEGLEINEFARKRMEITAQELLDEMEQVK 168 >d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} Length = 279 Score = 26.3 bits (57), Expect = 1.8 Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 6/108 (5%) Query: 106 IEMAKDIAQLFTLIDNIENGYGQYLEKISQKNVEKDFFNSK------FFTHFKEYIDEVD 159 +++ + +E Y + L + +K + K F + + EV+ Sbjct: 13 LDLLDRYVKFVKERTEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVN 72 Query: 160 KILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHYAKELRN 207 + + L+ ++ Y +K R ++ ++L N Sbjct: 73 DFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLEN 120 >d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174 Score = 26.4 bits (57), Expect = 2.2 Identities = 1/30 (3%), Positives = 12/30 (40%) Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196 + + L + + ++ + + + + + Sbjct: 141 VIELELNEEEKKQFQKSVDDVMALNKAVAA 170 >d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 223 Score = 26.2 bits (58), Expect = 2.3 Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 2/81 (2%) Query: 116 FTLIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDF 175 L E G + + + + F FF F + + E L I+ DF Sbjct: 35 VDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDF 94 Query: 176 DHEKIKSYLTHIKIVRDCLKK 196 K+ Y K + L Sbjct: 95 T--KMFDYFQLQKEQKKQLTS 113 >d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 295 Score = 26.0 bits (57), Expect = 2.7 Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Query: 111 DIAQLFTLIDNIE-NGYGQYLEKISQKN 137 + + + +E YG+YL +++ N Sbjct: 265 TREDVLEMAEKLEKTDYGKYLRDLAEGN 292 >d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]} Length = 81 Score = 25.7 bits (56), Expect = 2.8 Identities = 11/50 (22%), Positives = 21/50 (42%) Query: 89 INVLLFSFVIALLGNPNIEMAKDIAQLFTLIDNIENGYGQYLEKISQKNV 138 I VL F+ V L+G E+A D + L ++ ++ + + Sbjct: 2 IKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWALALEDGKL 51 >d1sgva2 d.265.1.2 (A:3-235) Pseudouridine synthase II TruB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 Score = 25.9 bits (56), Expect = 2.9 Identities = 20/155 (12%), Positives = 38/155 (24%), Gaps = 3/155 (1%) Query: 60 LCLGFFTLFAYWFFGEKFSYDVSIKIVLAINVLLFSFVIALLGNPNIEMAKDIAQ-LFTL 118 + + T SY +I++ + + + I + L Sbjct: 49 IGIERATKILGLLTAAPKSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERL 108 Query: 119 IDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDHE 178 I + +D+ + L D D E Sbjct: 109 RGEIRQVPSSVSAIKVGGRRAYRLARQGRSVQLEARPIRIDRFELLAARRRDQLIDIDVE 168 Query: 179 KIKSYLTHI-KIVRDCLKKDNIH-YAKELRNDWIG 211 S T+I + RD + + LR +G Sbjct: 169 IDCSSGTYIRALARDLGDALGVGGHVTALRRTRVG 203 >d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171 Score = 25.6 bits (55), Expect = 3.5 Identities = 5/30 (16%), Positives = 15/30 (50%) Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196 ++G+ + F E+I L + ++ ++ Sbjct: 139 VQGLSIDAFSQERINVTLNELLEEQNGVQH 168 >d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]} Length = 591 Score = 25.6 bits (55), Expect = 3.6 Identities = 7/33 (21%), Positives = 16/33 (48%) Query: 128 QYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDK 160 L++++ E FF+ F + +D+ +K Sbjct: 547 NNLDQVANHEAEWKAVLDHFFSDFTQQLDKAEK 579 >d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164 Score = 25.1 bits (54), Expect = 4.3 Identities = 6/31 (19%), Positives = 13/31 (41%) Query: 165 YGIEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195 I +PL + + + + ++ D LK Sbjct: 134 EKILELPLNEEEMALLNASAKAVRATLDTLK 164 >d1k7ka_ c.51.4.1 (A:) Hypothetical protein YggV {Escherichia coli [TaxId: 562]} Length = 209 Score = 24.8 bits (53), Expect = 5.2 Identities = 6/55 (10%), Positives = 16/55 (29%) Query: 147 FFTHFKEYIDEVDKILMRYGIEGIPLTDFDHEKIKSYLTHIKIVRDCLKKDNIHY 201 T + E+ +L +G++ + TD + + + Sbjct: 18 LATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKARHAAKV 72 >d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168 Score = 24.8 bits (53), Expect = 5.4 Identities = 5/30 (16%), Positives = 10/30 (33%) Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLKK 196 + I L + + IK + +K Sbjct: 138 VVSIELDKDEIIAFRKSAEIIKKYCEEVKN 167 >d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188 Score = 24.6 bits (53), Expect = 6.8 Identities = 6/29 (20%), Positives = 11/29 (37%) Query: 167 IEGIPLTDFDHEKIKSYLTHIKIVRDCLK 195 + DF E+IK + + C+ Sbjct: 142 ATDVSNDDFLWERIKKSEAELLAEKKCVA 170 >d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144 Score = 24.5 bits (52), Expect = 7.3 Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 3/65 (4%) Query: 135 QKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLT---DFDHEKIKSYLTHIKIVR 191 + + + + + V ++ +G+E IP + D I +++ Sbjct: 74 ESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIE 133 Query: 192 DCLKK 196 D Sbjct: 134 DPDGA 138 >d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Score = 24.4 bits (52), Expect = 7.5 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 118 LIDNIENGYGQYLEKISQKNVEKDFFNSKFFTHFKEYIDEVDKILMRYGIEGIPLTDFDH 177 L D I + +Y+EK + V FNS F+T+ E + + M+ I D Sbjct: 49 LNDTIIEFFMKYIEKSTPNTV---AFNSFFYTNLSERGYQGVRRWMKRKKTQIDKLDKIF 105 Query: 178 EKIKSYLTH 186 I +H Sbjct: 106 TPINLNQSH 114 >d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134 Score = 24.2 bits (51), Expect = 8.0 Identities = 9/32 (28%), Positives = 12/32 (37%) Query: 142 FFNSKFFTHFKEYIDEVDKILMRYGIEGIPLT 173 F SK+ +F D I RY + P Sbjct: 72 SFVSKYNLNFTNLNDADGVIWARYNVPWQPAF 103 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.327 0.143 0.450 Gapped Lambda K H 0.267 0.0548 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 883,467 Number of extensions: 42891 Number of successful extensions: 256 Number of sequences better than 10.0: 1 Number of HSP's gapped: 255 Number of HSP's successfully gapped: 63 Length of query: 214 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 132 Effective length of database: 1,281,736 Effective search space: 169189152 Effective search space used: 169189152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 51 (23.8 bits)