Query gi|254781164|ref|YP_003065577.1| hypothetical protein CLIBASIA_05355 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 56
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 01:19:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781164.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x65_A UNR protein; cell-free 6.9 93 0.0039 13.9 0.3 12 4-15 15-26 (89)
2 3cam_A Cold-shock domain famil 6.6 1.2E+02 0.0051 13.3 0.8 16 7-23 13-28 (67)
3 3nxh_A Transcriptional regulat 6.2 1.6E+02 0.0069 12.6 1.3 34 10-43 145-178 (269)
4 2kcm_A Cold shock domain famil 5.6 1.7E+02 0.0071 12.5 1.0 19 7-27 12-30 (74)
5 2ytv_A Cold shock domain-conta 5.2 89 0.0037 14.0 -0.6 23 5-27 16-38 (79)
6 1c9o_A CSPB, cold-shock protei 4.7 1.5E+02 0.0062 12.8 0.3 18 7-26 13-30 (66)
7 3a0j_A Cold shock protein; OB- 4.6 1.8E+02 0.0078 12.3 0.7 19 7-27 13-31 (73)
8 3mky_B Protein SOPB; partition 4.5 2.2E+02 0.0091 12.0 1.3 27 11-38 13-39 (189)
9 2k5n_A Putative cold-shock pro 4.3 1.9E+02 0.008 12.3 0.6 20 7-28 14-33 (74)
10 1h95_A CSD, Y-box binding prot 4.0 2E+02 0.0085 12.1 0.5 20 8-28 21-40 (79)
No 1
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational regulation, RNA chaperone, RNA/DNA binding, QB fold, greek- KEY topology; NMR {Homo sapiens}
Probab=6.92 E-value=93 Score=13.88 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=8.5
Q ss_pred EEEEEEEEEEEE
Q ss_conf 887200245776
Q gi|254781164|r 4 IFLEGYGFLSLR 15 (56)
Q Consensus 4 iflegygflslr 15 (56)
.|.+||||+.--
T Consensus 15 ~~k~GfGFI~~~ 26 (89)
T 1x65_A 15 AMRDGFGFIKCV 26 (89)
T ss_dssp ECCTTBCEEEES
T ss_pred EEECCEEEEEEC
T ss_conf 995957378769
No 2
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, structural genomics, oxford protein production facility, OPPF; 2.60A {Neisseria meningitidis MC58}
Probab=6.59 E-value=1.2e+02 Score=13.26 Aligned_cols=16 Identities=31% Similarity=0.796 Sum_probs=9.4
Q ss_pred EEEEEEEEEECCCCCCH
Q ss_conf 20024577604676346
Q gi|254781164|r 7 EGYGFLSLRESDGRADF 23 (56)
Q Consensus 7 egygflslresdgradf 23 (56)
.||||+..- .+++--|
T Consensus 13 kGyGFI~~~-~~~~dvF 28 (67)
T 3cam_A 13 KGFGFITPD-EGGEDLF 28 (67)
T ss_dssp TTEEEEEET-TSCCCEE
T ss_pred CCCEEEEEC-CCCEEEE
T ss_conf 994899977-9972899
No 3
>3nxh_A Transcriptional regulator YVHJ; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.58A {Bacillus subtilis subsp}
Probab=6.22 E-value=1.6e+02 Score=12.59 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=26.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 2457760467634666753379999998654164
Q gi|254781164|r 10 GFLSLRESDGRADFSDISEGIALLNIIYNTMKKP 43 (56)
Q Consensus 10 gflslresdgradfsdisegiallniiyntmkkp 43 (56)
.|+..|.+|+..||.-+..--.++.-+.+.+++|
T Consensus 145 ~y~R~R~~~~~gD~~R~~RQq~vl~al~~k~~~~ 178 (269)
T 3nxh_A 145 AYARMRKQDKRGDFGRNDRQKQILNALIDRMSSA 178 (269)
T ss_dssp HCC---------CCSHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999843566543769999999999999986396
No 4
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Shewanella oneidensis mr-1}
Probab=5.56 E-value=1.7e+02 Score=12.53 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=11.4
Q ss_pred EEEEEEEEEECCCCCCHHHHH
Q ss_conf 200245776046763466675
Q gi|254781164|r 7 EGYGFLSLRESDGRADFSDIS 27 (56)
Q Consensus 7 egygflslresdgradfsdis 27 (56)
.||||+.- .||.--|-.+|
T Consensus 12 KGfGFI~~--~dg~DvFvH~s 30 (74)
T 2kcm_A 12 KKYGFIQG--DDGESYFLHFS 30 (74)
T ss_dssp TTEEEEEE--TTSCEECCCGG
T ss_pred CCEEEEEC--CCCCEEEEEEE
T ss_conf 98738865--99988999940
No 5
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=5.22 E-value=89 Score=13.98 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=12.6
Q ss_pred EEEEEEEEEEEECCCCCCHHHHH
Q ss_conf 87200245776046763466675
Q gi|254781164|r 5 FLEGYGFLSLRESDGRADFSDIS 27 (56)
Q Consensus 5 flegygflslresdgradfsdis 27 (56)
+-.||||+.--+.+|.--|-.+|
T Consensus 16 ~k~gfGFI~~~~~~g~diF~H~s 38 (79)
T 2ytv_A 16 VKDQFGFINYEVGDSKKLFFHVK 38 (79)
T ss_dssp CCSSEEEESCCCSSSSSEEEETT
T ss_pred ECCCEEEEEECCCCCCEEEEEHH
T ss_conf 45971177706889966999978
No 6
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 2es2_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2i5m_X 2i5l_X
Probab=4.73 E-value=1.5e+02 Score=12.83 Aligned_cols=18 Identities=33% Similarity=0.831 Sum_probs=10.4
Q ss_pred EEEEEEEEEECCCCCCHHHH
Q ss_conf 20024577604676346667
Q gi|254781164|r 7 EGYGFLSLRESDGRADFSDI 26 (56)
Q Consensus 7 egygflslresdgradfsdi 26 (56)
.||||... .+|.--|-.+
T Consensus 13 kGfGFI~~--d~g~diF~H~ 30 (66)
T 1c9o_A 13 KGYGFIEV--EGGSDVFVHF 30 (66)
T ss_dssp TTEEEEEE--TTEEEEEEEG
T ss_pred CCEEEEEC--CCCCEEEEEE
T ss_conf 98499836--9993899997
No 7
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=4.63 E-value=1.8e+02 Score=12.32 Aligned_cols=19 Identities=26% Similarity=0.601 Sum_probs=10.1
Q ss_pred EEEEEEEEEECCCCCCHHHHH
Q ss_conf 200245776046763466675
Q gi|254781164|r 7 EGYGFLSLRESDGRADFSDIS 27 (56)
Q Consensus 7 egygflslresdgradfsdis 27 (56)
.||||++. .+|.--|-.+|
T Consensus 13 kGfGFI~~--d~g~dvFvH~s 31 (73)
T 3a0j_A 13 KGYGFIER--EGDTDVFVHYT 31 (73)
T ss_dssp TTEEEEEC--TTSCCEEEEGG
T ss_pred CCEEEECC--CCCCEEEEEEH
T ss_conf 98478315--89970999847
No 8
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=4.48 E-value=2.2e+02 Score=11.96 Aligned_cols=27 Identities=26% Similarity=0.100 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4577604676346667533799999986
Q gi|254781164|r 11 FLSLRESDGRADFSDISEGIALLNIIYN 38 (56)
Q Consensus 11 flslresdgradfsdisegiallniiyn 38 (56)
-|+-|+.|.| |.|.|.+|.+....+-.
T Consensus 13 ~~~~~~n~~r-~lS~~E~a~~y~rlL~~ 39 (189)
T 3mky_B 13 GLVPRGSHYR-PTSAYERGQRYASRLQN 39 (189)
T ss_dssp -----------CCCHHHHHHHHHHHHHT
T ss_pred HHCCCCCCCC-CCCHHHHHHHHHHHHHH
T ss_conf 5346777889-89999999999999986
No 9
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=4.30 E-value=1.9e+02 Score=12.26 Aligned_cols=20 Identities=20% Similarity=0.757 Sum_probs=0.0
Q ss_pred EEEEEEEEEECCCCCCHHHHHH
Q ss_conf 2002457760467634666753
Q gi|254781164|r 7 EGYGFLSLRESDGRADFSDISE 28 (56)
Q Consensus 7 egygflslresdgradfsdise 28 (56)
.||||+. ..||.--|-.+|+
T Consensus 14 kGfGFI~--~~~G~DvF~H~s~ 33 (74)
T 2k5n_A 14 KGFGFIK--DENGDNRYFHVIK 33 (74)
T ss_dssp TTEEEEE--ESSSCEEEEEGGG
T ss_pred CCEEEEE--ECCCCCEEEEEEE
T ss_conf 9968987--4699839999872
No 10
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=3.96 E-value=2e+02 Score=12.13 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=0.0
Q ss_pred EEEEEEEEECCCCCCHHHHHH
Q ss_conf 002457760467634666753
Q gi|254781164|r 8 GYGFLSLRESDGRADFSDISE 28 (56)
Q Consensus 8 gygflslresdgradfsdise 28 (56)
||||.. .+..+..-|-.+|.
T Consensus 21 GfGFI~-~ddg~~DvFvH~s~ 40 (79)
T 1h95_A 21 GYGFIN-RNDTKEDVFVHQTA 40 (79)
T ss_dssp TEEEEE-EGGGTEEEEEEGGG
T ss_pred CCEEEE-ECCCCEEEEEEHHH
T ss_conf 918998-58997049999699
Done!