Query gi|254781164|ref|YP_003065577.1| hypothetical protein CLIBASIA_05355 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 56
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:34:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781164.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w96a2 c.30.1.1 (A:14-183) Ac 19.8 6.8 0.0005 18.5 -1.0 17 6-27 134-150 (170)
2 d1ulza2 c.30.1.1 (A:1-114) Bio 19.3 7.1 0.00052 18.4 -1.0 17 6-27 78-94 (114)
3 d1hx8a1 a.7.8.2 (A:167-299) AP 11.8 51 0.0037 14.0 1.8 23 21-43 54-76 (133)
4 d1hf8a1 a.7.8.2 (A:150-281) Cl 7.2 60 0.0044 13.6 0.7 23 21-43 57-79 (132)
5 d1mjca_ b.40.4.5 (A:) Major co 6.7 69 0.005 13.3 0.8 20 7-27 15-34 (69)
6 d3ctaa1 a.4.5.28 (A:5-89) Ta10 5.4 52 0.0038 13.9 -0.4 35 7-42 46-81 (85)
7 d1a62a2 b.40.4.5 (A:48-125) Rh 5.4 68 0.0049 13.3 0.1 10 5-14 11-20 (78)
8 d1c9oa_ b.40.4.5 (A:) Major co 4.5 92 0.0067 12.7 0.3 19 7-27 13-31 (66)
9 d1cv8a_ d.3.1.1 (A:) Staphopai 4.2 1.3E+02 0.0095 11.9 1.6 33 9-41 8-40 (173)
10 d1wfqa_ b.40.4.5 (A:) Cold sho 4.1 1.3E+02 0.0098 11.8 0.9 9 5-13 26-34 (89)
No 1
>d1w96a2 c.30.1.1 (A:14-183) Acetyl-CoA carboxylase, BC-N subdomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.85 E-value=6.8 Score=18.54 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=9.8
Q ss_pred EEEEEEEEEEECCCCCCHHHHH
Q ss_conf 7200245776046763466675
Q gi|254781164|r 6 LEGYGFLSLRESDGRADFSDIS 27 (56)
Q Consensus 6 legygflslresdgradfsdis 27 (56)
--||||||- .++|...-
T Consensus 134 HPGYGFLSE-----n~~FA~~~ 150 (170)
T d1w96a2 134 WAGWGHASE-----NPLLPEKL 150 (170)
T ss_dssp ECCSSTTTT-----CTHHHHHH
T ss_pred EECHHHHHH-----CHHHHHHH
T ss_conf 846055301-----77899999
No 2
>d1ulza2 c.30.1.1 (A:1-114) Biotin carboxylase (BC), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=19.32 E-value=7.1 Score=18.44 Aligned_cols=17 Identities=41% Similarity=0.911 Sum_probs=10.5
Q ss_pred EEEEEEEEEEECCCCCCHHHHH
Q ss_conf 7200245776046763466675
Q gi|254781164|r 6 LEGYGFLSLRESDGRADFSDIS 27 (56)
Q Consensus 6 legygflslresdgradfsdis 27 (56)
--|||||| ..++|...-
T Consensus 78 hPGyGFLS-----Ena~Fa~~~ 94 (114)
T d1ulza2 78 HPGYGFLA-----ENAEFAKMC 94 (114)
T ss_dssp ECCSSTTT-----TCHHHHHHH
T ss_pred ECCHHHHH-----HHHHHHHHH
T ss_conf 63346550-----589999999
No 3
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.80 E-value=51 Score=14.01 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 34666753379999998654164
Q gi|254781164|r 21 ADFSDISEGIALLNIIYNTMKKP 43 (56)
Q Consensus 21 adfsdisegiallniiyntmkkp 43 (56)
.=|.+|++||+.+---|-.|.|+
T Consensus 54 ~lY~~inegiinLLd~fFem~k~ 76 (133)
T d1hx8a1 54 RLFACYNDGIINLLEKYFDMNKK 76 (133)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 99999999999999998706899
No 4
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.23 E-value=60 Score=13.63 Aligned_cols=23 Identities=39% Similarity=0.356 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 34666753379999998654164
Q gi|254781164|r 21 ADFSDISEGIALLNIIYNTMKKP 43 (56)
Q Consensus 21 adfsdisegiallniiyntmkkp 43 (56)
.=|.+|++||+.|---|-.|.|+
T Consensus 57 ~lY~~inegiinLLd~fFem~k~ 79 (132)
T d1hf8a1 57 RLFAAYNEGIINLLEKYFDMKKN 79 (132)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99999989999999999846899
No 5
>d1mjca_ b.40.4.5 (A:) Major cold shock protein {Escherichia coli [TaxId: 562]}
Probab=6.72 E-value=69 Score=13.31 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=11.2
Q ss_pred EEEEEEEEEECCCCCCHHHHH
Q ss_conf 200245776046763466675
Q gi|254781164|r 7 EGYGFLSLRESDGRADFSDIS 27 (56)
Q Consensus 7 egygflslresdgradfsdis 27 (56)
.||||+. .+..++--|-.+|
T Consensus 15 kGfGFI~-~d~g~~diFvH~s 34 (69)
T d1mjca_ 15 KGFGFIT-PDDGSKDVFVHFS 34 (69)
T ss_dssp TTEEEEE-ETTSCCCEEEEGG
T ss_pred CCEEEEE-ECCCCCCEEEEHH
T ss_conf 9979999-7689832999958
No 6
>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}
Probab=5.43 E-value=52 Score=13.95 Aligned_cols=35 Identities=20% Similarity=0.516 Sum_probs=22.9
Q ss_pred EEEEEEEEEECCCCCCHHHHH-HHHHHHHHHHHHHHC
Q ss_conf 200245776046763466675-337999999865416
Q gi|254781164|r 7 EGYGFLSLRESDGRADFSDIS-EGIALLNIIYNTMKK 42 (56)
Q Consensus 7 egygflslresdgradfsdis-egiallniiyntmkk 42 (56)
|--|+.. |+.|||+-+-.++ +|..++.-.|..+.+
T Consensus 46 e~~GlV~-r~~D~R~~~i~LT~~G~~~l~~~~~~~~r 81 (85)
T d3ctaa1 46 EKNGYIT-RTVTKRGQILNITEKGLDVLYTEFADLSR 81 (85)
T ss_dssp HHTTSEE-EEEETTEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HHCCCEE-EECCCCCCCCEECHHHHHHHHHHHHHHHH
T ss_conf 9879804-31245543000789999999999999999
No 7
>d1a62a2 b.40.4.5 (A:48-125) Rho termination factor, RNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=5.35 E-value=68 Score=13.35 Aligned_cols=10 Identities=40% Similarity=1.002 Sum_probs=6.8
Q ss_pred EEEEEEEEEE
Q ss_conf 8720024577
Q gi|254781164|r 5 FLEGYGFLSL 14 (56)
Q Consensus 5 flegygflsl 14 (56)
.-+|||||--
T Consensus 11 ~~dGyGFLR~ 20 (78)
T d1a62a2 11 LQDGFGFLRS 20 (78)
T ss_dssp CTTSCEEEEC
T ss_pred CCCCCEEEEC
T ss_conf 3898289588
No 8
>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus caldolyticus [TaxId: 1394]}
Probab=4.47 E-value=92 Score=12.67 Aligned_cols=19 Identities=32% Similarity=0.814 Sum_probs=10.9
Q ss_pred EEEEEEEEEECCCCCCHHHHH
Q ss_conf 200245776046763466675
Q gi|254781164|r 7 EGYGFLSLRESDGRADFSDIS 27 (56)
Q Consensus 7 egygflslresdgradfsdis 27 (56)
.||||+.. .+|.--|-.+|
T Consensus 13 kGfGFI~~--d~g~DiF~H~s 31 (66)
T d1c9oa_ 13 KGYGFIEV--EGGSDVFVHFT 31 (66)
T ss_dssp TTEEEEEE--TTEEEEEEEGG
T ss_pred CCEEEEEE--CCCCEEEEEEH
T ss_conf 99899986--69933999904
No 9
>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]}
Probab=4.24 E-value=1.3e+02 Score=11.86 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=25.1
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 024577604676346667533799999986541
Q gi|254781164|r 9 YGFLSLRESDGRADFSDISEGIALLNIIYNTMK 41 (56)
Q Consensus 9 ygflslresdgradfsdisegiallniiyntmk 41 (56)
+--+.+||..|.-....--.+-||||--|||-+
T Consensus 8 l~nf~irEtQg~nsWCAgytmaalLnat~nt~~ 40 (173)
T d1cv8a_ 8 LENFKIRETQGNNGWCAGYTMSALLNATYNTNK 40 (173)
T ss_dssp CTTCCCCCCCCSSSCHHHHHHHHHHHHHHTCCC
T ss_pred HCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 216405775376607788899999987515797
No 10
>d1wfqa_ b.40.4.5 (A:) Cold shock domain protein E1 (UNR) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.10 E-value=1.3e+02 Score=11.80 Aligned_cols=9 Identities=44% Similarity=1.136 Sum_probs=0.0
Q ss_pred EEEEEEEEE
Q ss_conf 872002457
Q gi|254781164|r 5 FLEGYGFLS 13 (56)
Q Consensus 5 flegygfls 13 (56)
|..||||++
T Consensus 26 ~~~gfGFI~ 34 (89)
T d1wfqa_ 26 LLTSYGFIQ 34 (89)
T ss_dssp ECSSEEEEE
T ss_pred ECCCCCEEE
T ss_conf 557410487
Done!