Query gi|254781165|ref|YP_003065578.1| pyridoxamine 5'-phosphate oxidase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 201
No_of_seqs 134 out of 1850
Neff 6.0
Searched_HMMs 39220
Date Mon May 30 05:36:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781165.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00558 pdxH pyridoxamine 5' 100.0 0 0 521.8 16.2 193 9-201 31-231 (231)
2 COG0259 PdxH Pyridoxamine-phos 100.0 0 0 487.2 21.1 192 8-201 23-214 (214)
3 PRK05679 pyridoxamine 5'-phosp 100.0 0 0 478.0 23.5 194 3-201 2-195 (195)
4 KOG2586 consensus 100.0 0 0 426.7 17.0 195 7-201 31-228 (228)
5 COG5135 Uncharacterized conser 99.7 4.4E-17 1.1E-21 119.1 6.1 178 21-201 11-245 (245)
6 pfam01243 Pyridox_oxidase Pyri 99.7 2.8E-16 7E-21 114.4 9.0 83 24-106 4-87 (87)
7 pfam10590 PNPOx_C Pyridoxine 5 99.5 9.5E-14 2.4E-18 99.7 5.6 41 159-201 1-41 (41)
8 KOG4558 consensus 99.4 3.1E-12 8E-17 90.9 9.3 182 20-201 13-251 (251)
9 COG3871 Uncharacterized stress 99.4 5.9E-12 1.5E-16 89.3 9.6 117 29-177 15-134 (145)
10 TIGR03618 Rv1155_F420 PPOX cla 98.9 6.4E-09 1.6E-13 71.7 7.9 71 35-105 1-73 (117)
11 TIGR03667 Rv3369 PPOX class pr 98.8 2.7E-08 6.9E-13 68.1 8.5 89 24-113 7-100 (130)
12 COG5015 Uncharacterized conser 98.2 1.4E-05 3.7E-10 52.3 8.3 81 34-116 14-95 (132)
13 PRK03467 hypothetical protein; 97.9 9E-05 2.3E-09 47.7 8.9 84 30-116 13-107 (141)
14 TIGR03666 Rv2061_F420 PPOX cla 97.4 0.00065 1.7E-08 42.7 7.3 85 29-114 10-95 (132)
15 PRK06733 hypothetical protein; 96.9 0.0059 1.5E-07 37.2 7.6 75 29-105 18-94 (151)
16 COG3467 Predicted flavin-nucle 96.1 0.053 1.3E-06 31.7 8.4 75 29-105 21-107 (166)
17 pfam04075 DUF385 Domain of unk 95.6 0.11 2.7E-06 29.9 8.2 76 32-113 26-106 (132)
18 TIGR03668 Rv0121_F420 PPOX cla 93.7 0.54 1.4E-05 25.8 10.9 75 30-105 11-102 (141)
19 COG3576 Predicted flavin-nucle 93.2 0.58 1.5E-05 25.6 7.4 74 31-104 41-118 (173)
20 TIGR00026 hi_GC_TIGR00026 cons 91.2 0.59 1.5E-05 25.6 5.3 77 32-114 10-96 (122)
21 pfam07080 DUF1348 Protein of u 79.5 4.5 0.00011 20.5 4.8 77 106-196 18-99 (143)
22 COG0748 HugZ Putative heme iro 77.0 0.38 9.7E-06 26.7 -1.2 65 20-85 83-147 (245)
23 pfam04612 GspM General secreti 75.2 6.5 0.00016 19.6 4.7 44 10-53 114-157 (159)
24 COG1897 MetA Homoserine trans- 64.6 7.4 0.00019 19.2 3.1 73 48-120 176-257 (307)
25 TIGR01523 ATPase-IID_K-Na pota 49.5 6.4 0.00016 19.6 0.7 79 2-91 420-499 (1001)
26 COG3787 Uncharacterized protei 42.9 26 0.00068 16.0 7.4 76 32-109 13-94 (145)
27 pfam05868 Rotavirus_VP7 Rotavi 41.7 23 0.00058 16.4 2.5 34 53-86 169-202 (249)
28 TIGR02291 rimK_rel_E_lig alpha 41.5 8.9 0.00023 18.7 0.4 37 35-71 147-184 (320)
29 PRK01617 hypothetical protein; 37.9 32 0.00081 15.5 3.4 38 157-196 73-124 (151)
30 PRK02250 hypothetical protein; 37.4 32 0.00083 15.5 3.6 38 157-196 71-122 (166)
31 PRK00183 hypothetical protein; 32.7 39 0.00099 15.0 3.6 39 156-196 72-125 (157)
32 pfam06591 Phage_T4_Ndd T4-like 30.8 42 0.0011 14.9 4.1 56 28-86 9-65 (154)
33 KOG0092 consensus 30.1 43 0.0011 14.8 3.6 13 101-113 127-139 (200)
34 COG3558 Uncharacterized protei 29.2 20 0.00052 16.7 0.6 78 106-195 20-100 (154)
35 pfam03088 Str_synth Strictosid 28.0 47 0.0012 14.6 4.2 44 54-97 4-55 (89)
36 pfam12303 SNDH Membrane bound 27.3 20 0.00051 16.7 0.3 10 48-57 113-122 (140)
37 PRK01752 hypothetical protein; 25.0 53 0.0014 14.3 3.8 39 156-196 76-127 (157)
38 COG4430 Uncharacterized protei 24.2 27 0.00069 16.0 0.5 126 10-144 11-149 (200)
39 KOG1513 consensus 23.3 26 0.00066 16.1 0.2 38 76-113 1155-1198(1300)
40 KOG0290 consensus 22.6 59 0.0015 14.0 3.1 58 33-93 209-270 (364)
41 KOG3374 consensus 21.7 62 0.0016 13.9 5.4 79 27-105 53-151 (210)
42 TIGR00600 rad2 DNA excision re 20.9 64 0.0016 13.8 2.0 18 11-28 978-995 (1127)
No 1
>TIGR00558 pdxH pyridoxamine 5'-phosphate oxidase; InterPro: IPR000659 Pyridoxamine 5'-phosphate oxidase () is a FMN flavoprotein involved in the de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate. It oxidizes pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P. The sequences of the enzyme from bacterial (genes pdxH or fprA) and fungal (gene PDX3) sources show that this protein has been highly conserved throughout evolution. PdxH is evolutionary related to one of the enzymes in the phenazine biosynthesis protein pathway, phzD (also known as phzG). ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0008615 pyridoxine biosynthetic process.
Probab=100.00 E-value=0 Score=521.77 Aligned_cols=193 Identities=45% Similarity=0.836 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHHHHH---CCCCCCCEEEEEEECC-CCCEEEEEEEHHEEECCEEEEEECCC-CCCHHHHHCCCCEEEE
Q ss_conf 76979999999999998---5888955799985859-98773221013000033058995178-5201223118947999
Q gi|254781165|r 9 NDVVFTLLSQWMQEAQS---SESHDPHAVVLATADR-MGFPNARVVLIKHFDQEGFVFYTNSQ-SPKGKEILENPKASLC 83 (201)
Q Consensus 9 ~~~P~~lf~~W~~~A~~---~~~~~p~a~~LaTvd~-~g~p~~R~V~lr~~~~~g~~f~Tn~~-S~K~~~l~~np~~al~ 83 (201)
.++||+||+.||++|.+ +...+|+||+|||||. +|+|++||||||++|+.||+|||||. |+||.+|++||+|||+
T Consensus 31 t~~P~~lF~~W~~~A~~~sda~~~eP~Am~~sTv~~P~GrP~sRmVLLK~~de~GFvFYTNy~tSRKg~qie~NP~aal~ 110 (231)
T TIGR00558 31 TDDPIELFEIWLKEAIEDSDAKLEEPNAMTLSTVDEPEGRPSSRMVLLKELDERGFVFYTNYGTSRKGHQIEENPNAALV 110 (231)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCCCHHHHHHHHCCCEEEE
T ss_conf 66817799999999874147885787537886130677852000555304289844688644112102347548844887
Q ss_pred EECCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHH--HHHHHHHCCCCC-CCCCCCCE
Q ss_conf 736664089999987521763788897523883335026621776567877778888--888887505788-77979732
Q gi|254781165|r 84 FHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDDLQKS--VQRYSSFYQEKE-IPRPVWWH 160 (201)
Q Consensus 84 f~w~~~~rQiRi~G~~~~l~~~~~d~yf~~Rp~~sqi~a~~s~QS~~i~s~~~l~~~--~~~~~~~~~~~~-ip~P~~w~ 160 (201)
|||+.++|||||+|.|++|+.++|++||+|||++||||||||+||..|.+|+.|+++ ..+.+++|++.+ ||||+|||
T Consensus 111 F~W~~LeRQVRVeG~~Ek~~~~~s~~YF~sRPr~S~IGAWaS~QS~vi~~R~~Le~kkv~~~~~~~~~~~~~iP~P~~WG 190 (231)
T TIGR00558 111 FFWPKLERQVRVEGKVEKIPAEESDKYFKSRPRGSRIGAWASEQSKVISDREELESKKVALKLEEKFEDAEDIPRPDYWG 190 (231)
T ss_pred EECHHHCCEEEEEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 20320287078610687648789988760598765022200122231230554477899999997322777887538888
Q ss_pred EEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEECCC
Q ss_conf 79997007996137898640269998815899707996289
Q gi|254781165|r 161 GFRICPLSIEFWSERPYRLHDRLLFSRETIAGKWTQFLLYP 201 (201)
Q Consensus 161 g~~i~P~~iEFw~~~~~rlHdR~~y~~~~~~~~W~~~~L~P 201 (201)
||+|+|.+||||||+++|||||++|.|+..++.|..+||+|
T Consensus 191 G~rv~P~~iEFWQGrpsRLHDR~~y~rkte~D~W~~~RLaP 231 (231)
T TIGR00558 191 GYRVVPEEIEFWQGRPSRLHDRIVYRRKTENDAWKRKRLAP 231 (231)
T ss_pred CEEEECCEEEEECCCCCCCHHHHHHHHCCCCCCCEEEECCC
T ss_conf 65840453753008698401122221025688614544589
No 2
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=0 Score=487.17 Aligned_cols=192 Identities=50% Similarity=0.872 Sum_probs=188.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEHHEEECCEEEEEECCCCCCHHHHHCCCCEEEEEECC
Q ss_conf 87697999999999999858889557999858599877322101300003305899517852012231189479997366
Q gi|254781165|r 8 NNDVVFTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWK 87 (201)
Q Consensus 8 ~~~~P~~lf~~W~~~A~~~~~~~p~a~~LaTvd~~g~p~~R~V~lr~~~~~g~~f~Tn~~S~K~~~l~~np~~al~f~w~ 87 (201)
+.+|||.+|..||++|.+.++++||||+|||||.+|+|++|+||||++|+.||+|||||.|+||++|++||++|+||||+
T Consensus 23 ~~~~P~~lF~~Wl~eA~~~~~~ePnAm~lATvd~~G~P~~R~VLLK~~DerGfvFyTN~~S~Kg~eLa~np~Aal~F~W~ 102 (214)
T COG0259 23 PTANPLTLFRRWLEEAIRAEVNEPNAMTLATVDEQGRPSSRIVLLKELDERGFVFYTNYGSRKGRELAANPYAALLFPWK 102 (214)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHCCCEEEEECCH
T ss_conf 86687999999999998645789861588865688982066898503687747998416871045676496406996313
Q ss_pred CCEEEEEEEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
Q ss_conf 64089999987521763788897523883335026621776567877778888888887505788779797327999700
Q gi|254781165|r 88 SLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPL 167 (201)
Q Consensus 88 ~~~rQiRi~G~~~~l~~~~~d~yf~~Rp~~sqi~a~~s~QS~~i~s~~~l~~~~~~~~~~~~~~~ip~P~~w~g~~i~P~ 167 (201)
++.|||||+|.|++++++++|+||.+||++|||+||||+||.||.++..|++++++++++|.+.+||+|+|||||+|.|.
T Consensus 103 ~L~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~~kf~~~~iP~P~~WgG~ri~p~ 182 (214)
T COG0259 103 ELERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELTAKFADGEIPRPPHWGGFRIVPE 182 (214)
T ss_pred HCCCEEEEEEEEEECCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEE
T ss_conf 10115898531551798897778862887674141115576635899999999999987537999889998463696221
Q ss_pred EEEECCCCCCCCCEEEEEEEECCCCCEEEEECCC
Q ss_conf 7996137898640269998815899707996289
Q gi|254781165|r 168 SIEFWSERPYRLHDRLLFSRETIAGKWTQFLLYP 201 (201)
Q Consensus 168 ~iEFw~~~~~rlHdR~~y~~~~~~~~W~~~~L~P 201 (201)
+||||||+++|||||++|+++ +|+|++.||+|
T Consensus 183 ~iEFWqgr~~RLHdR~~y~r~--~g~W~~~RL~P 214 (214)
T COG0259 183 SIEFWQGRPSRLHDRLRYRRD--DGGWKIERLAP 214 (214)
T ss_pred EEEEECCCCCCCEEEEEEEEC--CCCEEEEECCC
T ss_conf 788736997554511798605--89868886479
No 3
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=100.00 E-value=0 Score=478.02 Aligned_cols=194 Identities=49% Similarity=0.886 Sum_probs=189.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEHHEEECCEEEEEECCCCCCHHHHHCCCCEEE
Q ss_conf 44889876979999999999998588895579998585998773221013000033058995178520122311894799
Q gi|254781165|r 3 QDVPINNDVVFTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASL 82 (201)
Q Consensus 3 ~d~~~~~~~P~~lf~~W~~~A~~~~~~~p~a~~LaTvd~~g~p~~R~V~lr~~~~~g~~f~Tn~~S~K~~~l~~np~~al 82 (201)
.|++ ++|+++|+.||++|.++++.+|+||||||||.+|.|++|||+||+++++||+||||++|+|++||+.||+||+
T Consensus 2 ~d~p---~~P~~lf~~W~~eA~~~~~~ep~Am~LaTvd~~g~P~~R~Vllk~i~~~g~~FfTn~~S~K~~~l~~np~val 78 (195)
T PRK05679 2 ADLP---AEPFALFERWLAEAVKAELNDPNAMTLATVDEDGRPSQRIVLLKGFDERGFVFYTNYESRKGQQLAANPKAAL 78 (195)
T ss_pred CCCC---CCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEECCCCHHHHHHHCCEEEE
T ss_conf 9898---8889999999999998699998788999877999887899997799588279998189813666753975799
Q ss_pred EEECCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
Q ss_conf 97366640899999875217637888975238833350266217765678777788888888875057887797973279
Q gi|254781165|r 83 CFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDDLQKSVQRYSSFYQEKEIPRPVWWHGF 162 (201)
Q Consensus 83 ~f~w~~~~rQiRi~G~~~~l~~~~~d~yf~~Rp~~sqi~a~~s~QS~~i~s~~~l~~~~~~~~~~~~~~~ip~P~~w~g~ 162 (201)
||||++++|||||+|+|++++++++|+||.+||+++||+||+|+||++|+++++|+++++++.++|.+++||||++||||
T Consensus 79 ~f~W~~l~rQvRi~G~~~~l~~~~sd~yf~~Rp~~sqi~A~aS~QS~~i~~~~~L~~~~~~~~~~~~~~~iprP~~W~Gy 158 (195)
T PRK05679 79 LFPWHSLERQVRVEGRVEKVSAEESDAYFASRPRGSQIGAWASKQSRPISSRAALEAKLAEVKAKFAQGEVPRPPHWGGY 158 (195)
T ss_pred EEEEHHHCEEEEEEEEEEECCHHHHHHHHHHCCHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 96115716899999999868838888888639840050489335767779999999999999976257999999877799
Q ss_pred EEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEECCC
Q ss_conf 997007996137898640269998815899707996289
Q gi|254781165|r 163 RICPLSIEFWSERPYRLHDRLLFSRETIAGKWTQFLLYP 201 (201)
Q Consensus 163 ~i~P~~iEFw~~~~~rlHdR~~y~~~~~~~~W~~~~L~P 201 (201)
.|+|++||||||+++|||||++|+++ +++|.+++|+|
T Consensus 159 ~l~P~~iEFWqg~~~RlHdR~~y~~~--~~~W~~~rL~P 195 (195)
T PRK05679 159 RVVPESIEFWQGRPSRLHDRILYRRD--DGGWKIERLAP 195 (195)
T ss_pred EEECCEEEECCCCCCCCEEEEEEEEC--CCCEEEEEECC
T ss_conf 99648999667999887758999986--99577999349
No 4
>KOG2586 consensus
Probab=100.00 E-value=0 Score=426.66 Aligned_cols=195 Identities=42% Similarity=0.796 Sum_probs=188.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCCEEEEEEEHHEEECCEEEEEECC-CCCCHHHHHCCCCEEEEE
Q ss_conf 987697999999999999858-889557999858599877322101300003305899517-852012231189479997
Q gi|254781165|r 7 INNDVVFTLLSQWMQEAQSSE-SHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNS-QSPKGKEILENPKASLCF 84 (201)
Q Consensus 7 ~~~~~P~~lf~~W~~~A~~~~-~~~p~a~~LaTvd~~g~p~~R~V~lr~~~~~g~~f~Tn~-~S~K~~~l~~np~~al~f 84 (201)
+-+.+|+++|+.||++|.+.+ ..+++||+|||++.+|.|++||||||+++.+||+||||+ .|+|+++|+.||++||+|
T Consensus 31 l~~~DPv~~F~~wf~EA~~~~~~~~~~am~LsT~~~d~rvssRmvLlKgl~~~gf~fytn~~~srk~kdL~~NP~Aal~F 110 (228)
T KOG2586 31 LTPSDPVELFKKWFQEAAKDPDIGEINAMTLSTADKDGRVSSRMVLLKGLDHDGFVFYTNYGTSRKGKDLQENPNAALLF 110 (228)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCHHHEEEHHCCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 47898699999999997428886742220200104357841003313100678769995120134532234587516999
Q ss_pred ECCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-CCCCCCCCCEEEE
Q ss_conf 366640899999875217637888975238833350266217765678777788888888875057-8877979732799
Q gi|254781165|r 85 HWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDDLQKSVQRYSSFYQE-KEIPRPVWWHGFR 163 (201)
Q Consensus 85 ~w~~~~rQiRi~G~~~~l~~~~~d~yf~~Rp~~sqi~a~~s~QS~~i~s~~~l~~~~~~~~~~~~~-~~ip~P~~w~g~~ 163 (201)
||+.++|||||+|.|++|+++++++||++||++|||+||+|+||++|.+++.|+++.+++++.+.+ ..||+|++||||+
T Consensus 111 yw~~l~rQVRveG~ve~l~~ee~e~yf~srp~~SqIga~~s~qs~vI~~re~l~k~~e~l~~~~~~~~~IpkP~swgg~r 190 (228)
T KOG2586 111 YWEDLNRQVRVEGIVEKLPREEAEAYFKSRPRASQIGAWASPQSEVIPDREELEKKDEELTELFGDEQSIPKPDSWGGYR 190 (228)
T ss_pred EEHHCCCEEEEEECCCCCCHHHHHHHHHCCCCHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 60110301687723401898999998854863201051416777756978999988899999746655466887636468
Q ss_pred EEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEECCC
Q ss_conf 97007996137898640269998815899707996289
Q gi|254781165|r 164 ICPLSIEFWSERPYRLHDRLLFSRETIAGKWTQFLLYP 201 (201)
Q Consensus 164 i~P~~iEFw~~~~~rlHdR~~y~~~~~~~~W~~~~L~P 201 (201)
|.|.+||||||+++|||||+.|++...|+.|...||+|
T Consensus 191 l~P~~~EFwQg~~~rLhDR~~yr~~~~d~~Wk~~rlap 228 (228)
T KOG2586 191 LVPQEFEFWQGQPDRLHDRIVYRRLTVDEDWKLVRLAP 228 (228)
T ss_pred EEEEEEHHHCCCCHHHHHEEEEECCCCCCCEEEEECCC
T ss_conf 75324513328712200107874146787705886479
No 5
>COG5135 Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=4.4e-17 Score=119.06 Aligned_cols=178 Identities=20% Similarity=0.229 Sum_probs=122.4
Q ss_pred HHHHHCC--CCCCCEEEEEEECCC-CCEEEEEEEHHEEE-C----CEEEEEECCCCCCHHHHHCCC-----------CEE
Q ss_conf 9999858--889557999858599-87732210130000-3----305899517852012231189-----------479
Q gi|254781165|r 21 QEAQSSE--SHDPHAVVLATADRM-GFPNARVVLIKHFD-Q----EGFVFYTNSQSPKGKEILENP-----------KAS 81 (201)
Q Consensus 21 ~~A~~~~--~~~p~a~~LaTvd~~-g~p~~R~V~lr~~~-~----~g~~f~Tn~~S~K~~~l~~np-----------~~a 81 (201)
-.+.+.+ +..+..+.||||+.. +.|..|||++|+|- + .-++|-||.+|.|+.||...| ...
T Consensus 11 ~~~lk~N~dv~~~~yfQlATv~~~~~~PrnRTVvfRgFl~~D~~tn~L~F~TD~rS~Ki~ei~~qp~~~~~s~~~~~~fE 90 (245)
T COG5135 11 IQSLKNNTDVEPFVYFQLATVDELTNKPRNRTVVFRGFLFHDKRTNVLTFNTDMRSSKITEIFIQPNSNNSSDSKTPFFE 90 (245)
T ss_pred HHHHHCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 99975377646622589876225578876435998502404542205888400013355687636566788887750898
Q ss_pred EEEECCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCCCEEEEEC--CCCCCCCCHHHH-HHHH-----HHHHHHCCC---
Q ss_conf 99736664089999987521763788897523883335026621--776567877778-8888-----888875057---
Q gi|254781165|r 82 LCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWAS--KQSQKMPSLDDL-QKSV-----QRYSSFYQE--- 150 (201)
Q Consensus 82 l~f~w~~~~rQiRi~G~~~~l~~~~~d~yf~~Rp~~sqi~a~~s--~QS~~i~s~~~l-~~~~-----~~~~~~~~~--- 150 (201)
+|||+|++..|+||.|.+-.++.++++..|.-+ .+-+-...+ .--.|+....+= ...+ -+.++.|..
T Consensus 91 aC~yfP~T~eQ~RisGQ~~l~s~~~~~~~~~Pa--~~~t~d~l~~~~~r~p~~w~~~~~~r~i~~~~~~Ed~a~f~ppP~ 168 (245)
T COG5135 91 ACFYFPETWEQYRISGQCFLISKQFKYDIFSPA--FSETNDDLTDEEIRTPINWDDDDDKRNIENDEHHEDEADFYPPPQ 168 (245)
T ss_pred HHHCCCCHHHHEEEEEEEEEECHHHCCCCCCCH--HHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHCCCCCC
T ss_conf 871250016255750069997332347544801--344555420000368666898100013222247431111279998
Q ss_pred -----CC---CCCC-------------------CCCEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEECCC
Q ss_conf -----88---7797-------------------973279997007996137898640269998815899707996289
Q gi|254781165|r 151 -----KE---IPRP-------------------VWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIAGKWTQFLLYP 201 (201)
Q Consensus 151 -----~~---ip~P-------------------~~w~g~~i~P~~iEFw~~~~~rlHdR~~y~~~~~~~~W~~~~L~P 201 (201)
++ -|.| +.+|...+.+++|||+... .|--.|++|.|+.....|+.++..|
T Consensus 169 ~s~~q~~~~~~P~P~~~~~~e~~~~l~~~~~~~~~F~lv~le~~~VdfLnL~-g~pg~R~l~~rd~n~~~W~~q~Vnp 245 (245)
T COG5135 169 LSRHQKSLYRKPAPGQKLTSETSKQLDKLHAGLENFGLVCLEVDSVDFLNLK-GRPGERWLFQRDDNKDLWEEQEVNP 245 (245)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCEEEEEEC-CCCCCEEEEECCCCCCHHHCCCCCC
T ss_conf 7722365101678852235557025777775320325999603732136403-8987414676467713110014689
No 6
>pfam01243 Pyridox_oxidase Pyridoxamine 5'-phosphate oxidase.
Probab=99.67 E-value=2.8e-16 Score=114.43 Aligned_cols=83 Identities=36% Similarity=0.444 Sum_probs=74.3
Q ss_pred HHCCCCCCCEEEEEEECCCCCEEEEEEEHHEEECC-EEEEEECCCCCCHHHHHCCCCEEEEEECCCCEEEEEEEEEEECC
Q ss_conf 98588895579998585998773221013000033-05899517852012231189479997366640899999875217
Q gi|254781165|r 24 QSSESHDPHAVVLATADRMGFPNARVVLIKHFDQE-GFVFYTNSQSPKGKEILENPKASLCFHWKSLARQLRVRGLVEKY 102 (201)
Q Consensus 24 ~~~~~~~p~a~~LaTvd~~g~p~~R~V~lr~~~~~-g~~f~Tn~~S~K~~~l~~np~~al~f~w~~~~rQiRi~G~~~~l 102 (201)
...-..+++.|+|||++++|.|++|+|.+...+++ .+.|+|+..|+|.++|..||+|+++|+|+...+|+||.|+|+.+
T Consensus 4 ~~~~l~~~~~~~LaTv~~dG~P~~~~v~~~~~~~~~~i~~~t~~~s~k~~nl~~np~v~l~~~~~~~~~~v~v~G~a~~i 83 (87)
T pfam01243 4 IREFLAEPNAGVLATVDADGRPNVSPVGFKYGFDRVGIYFATNYDSRKARNLRENPRVALLFGWPELRRGVRIEGTAEIV 83 (87)
T ss_pred HHHHCCCCCEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEEE
T ss_conf 98326578869999868999998999999997589889999947974776325699799999906689899999999995
Q ss_pred CHHH
Q ss_conf 6378
Q gi|254781165|r 103 CDLA 106 (201)
Q Consensus 103 ~~~~ 106 (201)
++.+
T Consensus 84 ~d~~ 87 (87)
T pfam01243 84 TDGE 87 (87)
T ss_pred CCCC
T ss_conf 7999
No 7
>pfam10590 PNPOx_C Pyridoxine 5'-phosphate oxidase C-terminal dimerization region. Pyridoxine 5'-phosphate oxidase (PNPOx) catalyses the terminal step in the biosynthesis of pyridoxal 5'-phosphate (PLP), a cofactor used by many enzymes involved in amino acid metabolism. The enzyme oxidizes either the 4'-hydroxyl group of pyridoxine 5'-phosphate (PNP) or the 4'-primary amine of pyridoxamine 5'-phosphate (PMP) to an aldehyde. PNPOx is a homodimeric enzyme with one flavin mononucleotide (FMN) molecule non-covalently bound to each subunit. This domain represents one of the two dimerization regions of the protein, located at the edge of the dimer interface, at the C-terminus, being the last three beta strands, S6, S7, and S8 along with the last three residues to the end. In PNPOx from Myxococcus xanthus, S6 runs from residues 178-192, S7 from 200-206 and S8 from 211-215. the extended loop, of residues 167-177 may well be involved in the pocket formed between the two dimers that positions the
Probab=99.45 E-value=9.5e-14 Score=99.73 Aligned_cols=41 Identities=54% Similarity=1.099 Sum_probs=39.2
Q ss_pred CEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEECCC
Q ss_conf 3279997007996137898640269998815899707996289
Q gi|254781165|r 159 WHGFRICPLSIEFWSERPYRLHDRLLFSRETIAGKWTQFLLYP 201 (201)
Q Consensus 159 w~g~~i~P~~iEFw~~~~~rlHdR~~y~~~~~~~~W~~~~L~P 201 (201)
||||+|+|++|||||++++|||+|++|.++ +++|++++|+|
T Consensus 1 W~G~~i~P~~iEFW~~~~~RlH~R~~y~~~--~~~W~~~~L~P 41 (41)
T pfam10590 1 WGGYRVVPESIEFWQGRPSRLHDRLRYTRE--GDGWSIERLAP 41 (41)
T ss_pred CCCEEEEEEEEEEECCCCCCCEEEEEEEEC--CCCEEEEEECC
T ss_conf 987999980999914999830878999985--99888999777
No 8
>KOG4558 consensus
Probab=99.38 E-value=3.1e-12 Score=90.94 Aligned_cols=182 Identities=16% Similarity=0.173 Sum_probs=110.0
Q ss_pred HHHHHH-CCCCCCCEEEEEEEC-CCCCEEEEEEEHHEEEC-----CEEEEEECCCCCCHHHHHCCC--------------
Q ss_conf 999998-588895579998585-99877322101300003-----305899517852012231189--------------
Q gi|254781165|r 20 MQEAQS-SESHDPHAVVLATAD-RMGFPNARVVLIKHFDQ-----EGFVFYTNSQSPKGKEILENP-------------- 78 (201)
Q Consensus 20 ~~~A~~-~~~~~p~a~~LaTvd-~~g~p~~R~V~lr~~~~-----~g~~f~Tn~~S~K~~~l~~np-------------- 78 (201)
+++-+. .++-.+..+.|||++ -.+.|..|||++|+|-- +.+.|-|+.+|.|..+....+
T Consensus 13 ~~~~~~ns~~~hs~yfQlAT~~~l~~~PrnRTVvfRgF~~h~~R~~~v~~ntdlrssk~~~sf~~~~~a~~~~~~~~~~P 92 (251)
T KOG4558 13 LKENVDNSGVIHSEYFQLATLPTLEIYPRNRTVVFRGFVWHKPRPDDVLANTDLRSSKDIASFKAAEIAEQQKNTFPSGP 92 (251)
T ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCEECCCCCCCEEEECCCHHHHHHHHHHCHHHHCCCCCCCCCCC
T ss_conf 98652157754300078764022367756535998400324898760464120112213232103122112124565897
Q ss_pred C-EEEEEECCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCCCCC-CH-----------HHHHHHHH---
Q ss_conf 4-79997366640899999875217637888975238833350266217765678-77-----------77888888---
Q gi|254781165|r 79 K-ASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMP-SL-----------DDLQKSVQ--- 142 (201)
Q Consensus 79 ~-~al~f~w~~~~rQiRi~G~~~~l~~~~~d~yf~~Rp~~sqi~a~~s~QS~~i~-s~-----------~~l~~~~~--- 142 (201)
- ..+|||+|++-.||||.|.+..++.+.+|..=.--.-.-|--..-|.++-+.+ +. .++.+.+.
T Consensus 93 ~~femC~yfp~TweQ~RisGqi~~it~~~~d~~~~dAdn~dq~~l~~s~~~I~~d~~~e~e~~~~~~~~~~~~~~~~~~~ 172 (251)
T KOG4558 93 IPFEMCGYFPKTWEQIRISGQIWLITPELADRNEFDADNLDQDHLINSNGRIPEDWSWEEERRIWELHSPELRASFSTPP 172 (251)
T ss_pred CCCCEEEEECHHHHHEEECCEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHCCCC
T ss_conf 23104554002153548522699970121434447765500677765423566532301221023347888887643884
Q ss_pred ---HHHHHCCCCCCCCC-----------------CCCEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEECCC
Q ss_conf ---88875057887797-----------------973279997007996137898640269998815899707996289
Q gi|254781165|r 143 ---RYSSFYQEKEIPRP-----------------VWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIAGKWTQFLLYP 201 (201)
Q Consensus 143 ---~~~~~~~~~~ip~P-----------------~~w~g~~i~P~~iEFw~~~~~rlHdR~~y~~~~~~~~W~~~~L~P 201 (201)
++.....-++.|-+ +.+|...+.+++++|+-..+.+...|+.-.+......|+.++..|
T Consensus 173 s~sk~~~~~~~~P~pg~~~~~e~~~~~~~~~~~~~~f~lv~le~~~VdfLNLk~~~gr~~~~~~~g~~ek~W~s~~Vnp 251 (251)
T KOG4558 173 SYSKYQGDVKVSPLPGTLTGKEDPGVIEAWKTAWGRFSLVVLEANEVDFLNLKPPPGRKRVLHNRGLNEKQWSSTRVNP 251 (251)
T ss_pred CHHHCCCCEEECCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 0111047514357998655665765114443156632599970263114632689860578832687710012011479
No 9
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=99.36 E-value=5.9e-12 Score=89.35 Aligned_cols=117 Identities=26% Similarity=0.394 Sum_probs=94.3
Q ss_pred CCCCEEEEEEECCCCCEEEEEEEHHEEEC-CEEEEEECCCCCCHHHHHCCCCEEEEEECCCCEEEEEEEEEEECCCH-HH
Q ss_conf 89557999858599877322101300003-30589951785201223118947999736664089999987521763-78
Q gi|254781165|r 29 HDPHAVVLATADRMGFPNARVVLIKHFDQ-EGFVFYTNSQSPKGKEILENPKASLCFHWKSLARQLRVRGLVEKYCD-LA 106 (201)
Q Consensus 29 ~~p~a~~LaTvd~~g~p~~R~V~lr~~~~-~g~~f~Tn~~S~K~~~l~~np~~al~f~w~~~~rQiRi~G~~~~l~~-~~ 106 (201)
..-..+.|+|+..+|.|++|.+.+.+-.. ..+.|||+..|+|+.+|+.||+|+++|-.+...--|-|.|+++.+.+ ..
T Consensus 15 e~~kv~~l~tv~~~g~phsRpM~f~hdg~~~tiwf~T~kds~~v~eik~n~~v~v~~~~~~~~~fv~v~Gtael~~dra~ 94 (145)
T COG3871 15 EGSKVGMLATVQENGHPHSRPMTFNHDGPKGTIWFFTNKDSRKVEEIKKNPKVCVLFGYDDHDAFVEVSGTAELVEDRAK 94 (145)
T ss_pred HHCCEEEEEEECCCCCCCCCCEECCCCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEEEEECCHHH
T ss_conf 41836899970588972435200158777640786336753888987508807999963898616999877872023777
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCEEEEEEEEEEEECCCCCC
Q ss_conf 889752388333502662177656787777888888888750-57887797973279997007996137898
Q gi|254781165|r 107 SDHYYASRPRESKIGAWASKQSQKMPSLDDLQKSVQRYSSFY-QEKEIPRPVWWHGFRICPLSIEFWSERPY 177 (201)
Q Consensus 107 ~d~yf~~Rp~~sqi~a~~s~QS~~i~s~~~l~~~~~~~~~~~-~~~~ip~P~~w~g~~i~P~~iEFw~~~~~ 177 (201)
.|.+|.+- ++..| .|++-| ..+.++|.|+.+++|..+.+
T Consensus 95 ~d~~W~~~-----------------------------~~~wFe~GkedP---~l~~Lkv~~e~i~yw~~~~~ 134 (145)
T COG3871 95 IDELWTSV-----------------------------LEAWFEQGKEDP---DLTMLKVTAEDIDYWNSGDN 134 (145)
T ss_pred HHHHHHHH-----------------------------HHHHHHCCCCCC---CEEEEEECHHHHHHHHCCCC
T ss_conf 87764136-----------------------------788875588898---86899970637478755698
No 10
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=98.91 E-value=6.4e-09 Score=71.73 Aligned_cols=71 Identities=25% Similarity=0.235 Sum_probs=60.3
Q ss_pred EEEEECCCCCEEEEEEEHHEEE-CCEEEEEECCCCCCHHHHHCCCCEEEEEECCCC-EEEEEEEEEEECCCHH
Q ss_conf 9985859987732210130000-330589951785201223118947999736664-0899999875217637
Q gi|254781165|r 35 VLATADRMGFPNARVVLIKHFD-QEGFVFYTNSQSPKGKEILENPKASLCFHWKSL-ARQLRVRGLVEKYCDL 105 (201)
Q Consensus 35 ~LaTvd~~g~p~~R~V~lr~~~-~~g~~f~Tn~~S~K~~~l~~np~~al~f~w~~~-~rQiRi~G~~~~l~~~ 105 (201)
+|||++.||.|++..|-+--.+ ++-+.|+|..+|.|.++|..||+|++++..... .+-+.|+|+|+.+.+.
T Consensus 1 vLaTv~~DG~P~~~pvw~~~~~d~~~i~~~t~~~~~K~~nl~rdprvsl~v~~~~~~~~~v~i~G~aev~~d~ 73 (117)
T TIGR03618 1 VLATIRADGRPQLSPVWFGVDPDGDILVVSTTAGRAKARNLRRDPRVSLSVLDPDFPYRYVEVEGTAELVEDP 73 (117)
T ss_pred CEEEECCCCCEEEEEEEEEEECCCCEEEEEECCCCHHHHHHHCCCEEEEEEECCCCCCCEEEEEEEEEEECCC
T ss_conf 9899999998489968999977999999997785788898641991999999699997579999999996697
No 11
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=98.82 E-value=2.7e-08 Score=68.10 Aligned_cols=89 Identities=25% Similarity=0.336 Sum_probs=70.0
Q ss_pred HHCCCCCCCEEEEEEECCCCCEEEEEEEHHEEECCEEEEEECCCCCCHHHHHCCCCEEEEEECCCC-EEEEEEEEEEECC
Q ss_conf 985888955799985859987732210130000330589951785201223118947999736664-0899999875217
Q gi|254781165|r 24 QSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWKSL-ARQLRVRGLVEKY 102 (201)
Q Consensus 24 ~~~~~~~p~a~~LaTvd~~g~p~~R~V~lr~~~~~g~~f~Tn~~S~K~~~l~~np~~al~f~w~~~-~rQiRi~G~~~~l 102 (201)
+..-..++.-..|||+..||.|++..|-+ .++++.++|+|...|.|+++|..||+|+||+-...- ..=|.|+|+|+..
T Consensus 7 v~~RL~~~~~~wLaTv~~DG~P~~~PVWf-~~dg~~l~~~t~~~~~K~rNlrrdPrVsl~vd~~~~~~~~v~v~GtAevv 85 (130)
T TIGR03667 7 VARRLREESIVWLTTVRRSGQPQPVPVWF-LWDGTEFLIYSRPQAAKLRNIRRNPRVSLHLNSDGRGGDVVVFTGTAEVV 85 (130)
T ss_pred HHHHHCCCCEEEEEEECCCCCCEEEEEEE-EEECCEEEEEECCCCHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEE
T ss_conf 99875357489999989899847823689-99999999996897688998753996799996488898779998799992
Q ss_pred CHH----HHHHHHHC
Q ss_conf 637----88897523
Q gi|254781165|r 103 CDL----ASDHYYAS 113 (201)
Q Consensus 103 ~~~----~~d~yf~~ 113 (201)
.+. +...|+.+
T Consensus 86 ~d~~~~~e~aa~~~k 100 (130)
T TIGR03667 86 ADAPPAREIPAYLAK 100 (130)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 789762256789988
No 12
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=1.4e-05 Score=52.31 Aligned_cols=81 Identities=27% Similarity=0.348 Sum_probs=66.7
Q ss_pred EEEEEECCCCCEEEEEEEHHEEECCEEEEEECCCCCCHHHHHCCCCEEEEEECCCCEEEEEEEEEEECCCHHHHHH-HHH
Q ss_conf 9998585998773221013000033058995178520122311894799973666408999998752176378889-752
Q gi|254781165|r 34 VVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDH-YYA 112 (201)
Q Consensus 34 ~~LaTvd~~g~p~~R~V~lr~~~~~g~~f~Tn~~S~K~~~l~~np~~al~f~w~~~~rQiRi~G~~~~l~~~~~d~-yf~ 112 (201)
..|||++ +|.|.+|..-.--...+.+-|.|+.+-+-.+||+.||.+++|-..+. +.-|||+|.|+-.+.-+... .+.
T Consensus 14 ~~laTve-~gkPrvRpfq~~f~~g~KlYfcTantK~~yKqik~np~vefcg~~kd-g~~vrlrg~a~f~~nielkk~ale 91 (132)
T COG5015 14 VALATVE-DGKPRVRPFQVMFVEGEKLYFCTANTKPYYKQIKKNPEVEFCGMDKD-GVMVRLRGRAEFVENIELKKLALE 91 (132)
T ss_pred EEEEECC-CCCCCEEECCCEEEECCEEEEEECCCHHHHHHHHHCCCEEEEEECCC-CEEEEEEEEEEECCCHHHHHHHHH
T ss_conf 7999835-99832200242465088899991798478998753997179876578-459999613875153678998866
Q ss_pred CCCC
Q ss_conf 3883
Q gi|254781165|r 113 SRPR 116 (201)
Q Consensus 113 ~Rp~ 116 (201)
..|.
T Consensus 92 ~yP~ 95 (132)
T COG5015 92 IYPV 95 (132)
T ss_pred HCHH
T ss_conf 4635
No 13
>PRK03467 hypothetical protein; Provisional
Probab=97.94 E-value=9e-05 Score=47.69 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=63.5
Q ss_pred CCCEEEEEEECCCCCEEEEEEEHHEEECC--EEEEEECCCCCCHHHHHCCCCEEEEEE-----CCCCEEEEEEEEEEECC
Q ss_conf 95579998585998773221013000033--058995178520122311894799973-----66640899999875217
Q gi|254781165|r 30 DPHAVVLATADRMGFPNARVVLIKHFDQE--GFVFYTNSQSPKGKEILENPKASLCFH-----WKSLARQLRVRGLVEKY 102 (201)
Q Consensus 30 ~p~a~~LaTvd~~g~p~~R~V~lr~~~~~--g~~f~Tn~~S~K~~~l~~np~~al~f~-----w~~~~rQiRi~G~~~~l 102 (201)
.-|.++|||.+. +.|-+-.+.. -+|++ .|+|.|+..|+-++.+..||+||.+.. |..+ +=|-++|.++.+
T Consensus 13 ~~hvlTLat~~~-~~~w~A~cFY-afD~~~~~L~~~S~~~TrH~~~m~~np~VAgTIa~~~k~v~~I-kGVQf~G~~~~l 89 (141)
T PRK03467 13 KQHVVTLCVGQE-GELWCANAFY-LFDAQKVALYLLTEEKTRHAQMMGPNAQVAGTVNGQPKTVALI-RGVQFKGEIRRL 89 (141)
T ss_pred HCCEEEEEEECC-CCEEEEEEEE-EECCCCEEEEEEECCCCHHHHHHHHCCCEEEEEECCCCCHHHE-EEEEEEEEEHHH
T ss_conf 683899999359-9855678899-9858872999984797878998855995799981585313146-458899998031
Q ss_pred CHHHHHH----HHHCCCC
Q ss_conf 6378889----7523883
Q gi|254781165|r 103 CDLASDH----YYASRPR 116 (201)
Q Consensus 103 ~~~~~d~----yf~~Rp~ 116 (201)
+.++.+. |+.+-|.
T Consensus 90 ~~e~~~~ar~~Y~~rfP~ 107 (141)
T PRK03467 90 EGEESDAARKAYCRRFPV 107 (141)
T ss_pred CCHHHHHHHHHHHHHCCH
T ss_conf 782799999999886978
No 14
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=97.44 E-value=0.00065 Score=42.71 Aligned_cols=85 Identities=19% Similarity=0.099 Sum_probs=66.2
Q ss_pred CCCCEEEEEEECCCCCEEEEEEEHHEEECCEEEEEECCCCCCHHHHHCCCCEEEEEECCCCE-EEEEEEEEEECCCHHHH
Q ss_conf 89557999858599877322101300003305899517852012231189479997366640-89999987521763788
Q gi|254781165|r 29 HDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWKSLA-RQLRVRGLVEKYCDLAS 107 (201)
Q Consensus 29 ~~p~a~~LaTvd~~g~p~~R~V~lr~~~~~g~~f~Tn~~S~K~~~l~~np~~al~f~w~~~~-rQiRi~G~~~~l~~~~~ 107 (201)
.+-..+.|+|.-.||.|..--|.+- .+++.+.|+|..+|-|++-|.+||+|.+.-..-.-+ .---++|+|+.+++++.
T Consensus 10 ~~~kyv~LtT~rkDG~pv~TPVW~a-~~~~~l~v~T~~~s~KvkRir~nprV~l~~Cd~rG~~~g~~v~g~Arild~~e~ 88 (132)
T TIGR03666 10 ARARYALLTTFRKDGTPVPTPVWAA-VDGDKLLVRTKEDSWKVKRIRNNPRVTLAPCDRRGRPTGPVVPGRARILDGAET 88 (132)
T ss_pred HHCCEEEEEEECCCCCCCCCCEEEE-ECCCEEEEEECCCCHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEEECCHHHH
T ss_conf 1163899999999998768666999-819999999668638887653199559996588898589867779998888999
Q ss_pred HHHHHCC
Q ss_conf 8975238
Q gi|254781165|r 108 DHYYASR 114 (201)
Q Consensus 108 d~yf~~R 114 (201)
.......
T Consensus 89 ~~~~~~l 95 (132)
T TIGR03666 89 ARARDLL 95 (132)
T ss_pred HHHHHHH
T ss_conf 9999999
No 15
>PRK06733 hypothetical protein; Provisional
Probab=96.90 E-value=0.0059 Score=37.18 Aligned_cols=75 Identities=16% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCCEEEEEEECCC-CCEEEEEEEHH-EEECCEEEEEECCCCCCHHHHHCCCCEEEEEECCCCEEEEEEEEEEECCCHH
Q ss_conf 89557999858599-87732210130-0003305899517852012231189479997366640899999875217637
Q gi|254781165|r 29 HDPHAVVLATADRM-GFPNARVVLIK-HFDQEGFVFYTNSQSPKGKEILENPKASLCFHWKSLARQLRVRGLVEKYCDL 105 (201)
Q Consensus 29 ~~p~a~~LaTvd~~-g~p~~R~V~lr-~~~~~g~~f~Tn~~S~K~~~l~~np~~al~f~w~~~~rQiRi~G~~~~l~~~ 105 (201)
+.-+-.+|+|+|.+ |.|++..+--- -.|++.+.|.-+.+|+=+..|+.||++++++.-+.. -+-|.|.+..+.+.
T Consensus 18 q~e~~V~l~TvD~ekg~P~~~aISWVyA~de~tIrfAvd~rSriv~NIk~~p~v~l~i~a~~s--~ysI~G~a~i~~e~ 94 (151)
T PRK06733 18 RKECIVMVATTDFEKQVPNVSAISWVYAVSKTSIRFAVDQRSRIVENIRHSTGVVLTIMANES--VFSISGAGEILTER 94 (151)
T ss_pred HCCCEEEEEEECCCCCCCCEEEEEEEEECCCCEEEEEECCCCHHHHHHHCCCCEEEEEEECCC--EEEEEEEEEEEEEE
T ss_conf 129679999405334896421799899668876999973763677787519947999983891--89996068998642
No 16
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=96.12 E-value=0.053 Score=31.66 Aligned_cols=75 Identities=20% Similarity=0.058 Sum_probs=58.4
Q ss_pred CCCCEEEEEEECCCCCEEEEEEEHHEEECCEEEEEECCCCCCHHHHHCCCCEEEEEECCC------------CEEEEEEE
Q ss_conf 895579998585998773221013000033058995178520122311894799973666------------40899999
Q gi|254781165|r 29 HDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWKS------------LARQLRVR 96 (201)
Q Consensus 29 ~~p~a~~LaTvd~~g~p~~R~V~lr~~~~~g~~f~Tn~~S~K~~~l~~np~~al~f~w~~------------~~rQiRi~ 96 (201)
..-..+.||+++.+ +|-+=-+.+-.-+ +.|.||+...++|..-|..||.|++...-.. --+.|-+.
T Consensus 21 ~~~~~~~La~~~~~-~PyivP~~y~~~~-~~lY~h~~~~grk~~~l~~~p~V~~ev~~~~~~~~~~~~~~s~~y~SVvv~ 98 (166)
T COG3467 21 AAGRVGRLAFAGDG-QPYVVPLNYGYEG-GHLYFHGSPEGRKIELLRKNPLVCLEVDEIHGLVLKSPFNSSRNYRSVVVF 98 (166)
T ss_pred HHCCEEEEEECCCC-CCEEEEEEEEEEC-CEEEEEECCCCHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCEEEEEEE
T ss_conf 63887999975799-8679974767738-868998178623667752599479999735661003555688645899997
Q ss_pred EEEECCCHH
Q ss_conf 875217637
Q gi|254781165|r 97 GLVEKYCDL 105 (201)
Q Consensus 97 G~~~~l~~~ 105 (201)
|+++.+++.
T Consensus 99 G~~~~l~~~ 107 (166)
T COG3467 99 GRAEELSDL 107 (166)
T ss_pred EEEEECCCH
T ss_conf 389975884
No 17
>pfam04075 DUF385 Domain of unknown function (DUF385). Family of Mycobacterium tuberculosis proteins.
Probab=95.61 E-value=0.11 Score=29.89 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=56.7
Q ss_pred CEEEEEEECC-CCCEEEEEEEHHEEECCEEEEEECCCCCCH----HHHHCCCCEEEEEECCCCEEEEEEEEEEECCCHHH
Q ss_conf 5799985859-987732210130000330589951785201----22311894799973666408999998752176378
Q gi|254781165|r 32 HAVVLATADR-MGFPNARVVLIKHFDQEGFVFYTNSQSPKG----KEILENPKASLCFHWKSLARQLRVRGLVEKYCDLA 106 (201)
Q Consensus 32 ~a~~LaTvd~-~g~p~~R~V~lr~~~~~g~~f~Tn~~S~K~----~~l~~np~~al~f~w~~~~rQiRi~G~~~~l~~~~ 106 (201)
..+.|-|++. .|.|..-.++.-.-+++-+++.||..++|- .+|.+||.|.+.+- --++..+|..++++|
T Consensus 26 p~llLtt~GrkSG~~R~~pL~~~~~~~~~~vvaS~gG~~~~P~Wy~NL~A~P~v~v~~~------~~~~~~~A~~l~~~E 99 (132)
T pfam04075 26 PVLLLTTTGRRSGKPRRTPLGGVRDGGRYWVVASKGGAPRHPDWYRNLKANPRVRVQIG------GRTFDVTARLLTDDE 99 (132)
T ss_pred CEEEEEECCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHCCCEEEEEC------CEEEEEEEEECCCHH
T ss_conf 89999958998998028868999989989999965899999788998866993699999------999999999999379
Q ss_pred HHHHHHC
Q ss_conf 8897523
Q gi|254781165|r 107 SDHYYAS 113 (201)
Q Consensus 107 ~d~yf~~ 113 (201)
-+.+|..
T Consensus 100 r~~~w~~ 106 (132)
T pfam04075 100 KARLWQL 106 (132)
T ss_pred HHHHHHH
T ss_conf 9999999
No 18
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=93.73 E-value=0.54 Score=25.80 Aligned_cols=75 Identities=23% Similarity=0.227 Sum_probs=49.7
Q ss_pred CCCEEEEEEECCCCCEEEEEEEHHEE------ECCEEEEEECCC------CCCHHHHHCCCCEEEEEE-----CCCCEEE
Q ss_conf 95579998585998773221013000------033058995178------520122311894799973-----6664089
Q gi|254781165|r 30 DPHAVVLATADRMGFPNARVVLIKHF------DQEGFVFYTNSQ------SPKGKEILENPKASLCFH-----WKSLARQ 92 (201)
Q Consensus 30 ~p~a~~LaTvd~~g~p~~R~V~lr~~------~~~g~~f~Tn~~------S~K~~~l~~np~~al~f~-----w~~~~rQ 92 (201)
......|||++.+|.|+.=-|++--- +.+.+++..|-. =+...+|..||+|+|+.= |..+ -=
T Consensus 11 ~arva~LAT~~~~G~PhlvPv~FA~~~~~~~~~~d~i~taVD~KPK~t~~LRRL~NI~~nP~vsLLvDhYddDWs~L-WW 89 (141)
T TIGR03668 11 QARVARLATVSPDGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENPRVSLLVDRYDDDWTRL-WW 89 (141)
T ss_pred CCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCEE-EE
T ss_conf 28448998607999564774899932566667798699832678787511022431344993699962257875302-69
Q ss_pred EEEEEEEECCCHH
Q ss_conf 9999875217637
Q gi|254781165|r 93 LRVRGLVEKYCDL 105 (201)
Q Consensus 93 iRi~G~~~~l~~~ 105 (201)
||+.|.++.+.+.
T Consensus 90 VRadG~A~v~~~g 102 (141)
T TIGR03668 90 VRADGRAEILRPG 102 (141)
T ss_pred EEECCEEEEECCC
T ss_conf 9825469981799
No 19
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=93.24 E-value=0.58 Score=25.63 Aligned_cols=74 Identities=24% Similarity=0.288 Sum_probs=48.5
Q ss_pred CCEEEEEEECCCCCEEEEEEE-HHEEECCEEEEEEC-CCCCCH-HHHHCCCCEEEEEECC-CCEEEEEEEEEEECCCH
Q ss_conf 557999858599877322101-30000330589951-785201-2231189479997366-64089999987521763
Q gi|254781165|r 31 PHAVVLATADRMGFPNARVVL-IKHFDQEGFVFYTN-SQSPKG-KEILENPKASLCFHWK-SLARQLRVRGLVEKYCD 104 (201)
Q Consensus 31 p~a~~LaTvd~~g~p~~R~V~-lr~~~~~g~~f~Tn-~~S~K~-~~l~~np~~al~f~w~-~~~rQiRi~G~~~~l~~ 104 (201)
...+.|||+|.+|.|+.--.- .+..|.++++.-++ ..+-|. ..|..||++++-++-. ....-+.|.|+++...+
T Consensus 41 ~~~~~laT~d~dG~p~~~~~p~~qr~d~~~~~~v~d~~~~~~~~~~lgnn~~~tl~n~~~~~~~~~f~v~gt~~I~~~ 118 (173)
T COG3576 41 SQLAALATVDKDGPPNVDPIPFAQRGDPAGFTIVIDDNTAGKTDRNLGNNPKITLRNILRNRRALLFLVKGTARIQGR 118 (173)
T ss_pred CCEEEEEEECCCCCCCCCCCCHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCEEEEEEC
T ss_conf 537999996467798857663110268777369737100265300134575013677615775424873104899822
No 20
>TIGR00026 hi_GC_TIGR00026 conserved hypothetical protein TIGR00026; InterPro: IPR004378 The Mycobacterium tuberculosis paralogous family 11 groups a number of related hypothetical proteins from this organism. The function of these proteins is not yet known..
Probab=91.17 E-value=0.59 Score=25.60 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=59.4
Q ss_pred CEEEEEEEC-CCCCEEEEEEEHHEEE----CCEEEEEECCC---CCCH-HHHHCCCCEEEEEECCCCEEEEEEEEEEECC
Q ss_conf 579998585-9987732210130000----33058995178---5201-2231189479997366640899999875217
Q gi|254781165|r 32 HAVVLATAD-RMGFPNARVVLIKHFD----QEGFVFYTNSQ---SPKG-KEILENPKASLCFHWKSLARQLRVRGLVEKY 102 (201)
Q Consensus 32 ~a~~LaTvd-~~g~p~~R~V~lr~~~----~~g~~f~Tn~~---S~K~-~~l~~np~~al~f~w~~~~rQiRi~G~~~~l 102 (201)
.+| |-|++ +.|.|..-.|-+...+ +.-++.-|+.. .+.+ .+|++||.|.+.+ +...-..+++..+
T Consensus 10 ~~l-L~t~GrKsG~PR~tpv~~~~~~~dGk~~~~~vaS~~G~~r~p~W~~Nl~AnP~V~V~~-----g~~~~~~~~Ar~~ 83 (122)
T TIGR00026 10 VLL-LTTTGRKSGKPRTTPVTYVRHDVDGKDGVLVVASNGGAPRHPDWYKNLKANPRVRVRV-----GGKVVFVATARLV 83 (122)
T ss_pred CEE-EEEEECCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCHHHHEEECCEEEEEE-----CCCCCCEECCEEC
T ss_conf 068-9850011485743678778678788520288762588977821000011378048986-----9803330034676
Q ss_pred CHH-HHHHHHHCC
Q ss_conf 637-888975238
Q gi|254781165|r 103 CDL-ASDHYYASR 114 (201)
Q Consensus 103 ~~~-~~d~yf~~R 114 (201)
+++ +.+++|..-
T Consensus 84 ~~~~~~~~~w~~~ 96 (122)
T TIGR00026 84 SGDEERDQLWAAV 96 (122)
T ss_pred CCCCCHHHHHHHH
T ss_conf 9757278898998
No 21
>pfam07080 DUF1348 Protein of unknown function (DUF1348). This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.
Probab=79.46 E-value=4.5 Score=20.49 Aligned_cols=77 Identities=17% Similarity=0.369 Sum_probs=52.7
Q ss_pred HHHHHHHCCCCCCCEEEEECC-----CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCC
Q ss_conf 888975238833350266217-----765678777788888888875057887797973279997007996137898640
Q gi|254781165|r 106 ASDHYYASRPRESKIGAWASK-----QSQKMPSLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLH 180 (201)
Q Consensus 106 ~~d~yf~~Rp~~sqi~a~~s~-----QS~~i~s~~~l~~~~~~~~~~~~~~~ip~P~~w~g~~i~P~~iEFw~~~~~rlH 180 (201)
.+.+-|++|.+..=.+|+.-. -|+-|..++++..=+.. +... ++ +|+|+ =|.|....+|+.
T Consensus 18 ~AEDaWNsrdP~~ValAYT~Ds~WRNR~eF~~GR~~I~~FLt~---KW~~-E~-------~YrL~---KeLwaf~~nRIA 83 (143)
T pfam07080 18 MAEDAWNSRDPAKVALAYTEDSVWRNRSEFFQGREAIVAFLTR---KWER-EL-------DYRLI---KELWAFTGNRIA 83 (143)
T ss_pred HHHHHHCCCCCHHEEECCCCCCCEECCCHHCCCHHHHHHHHHH---HHHH-HC-------CCHHH---HHHEECCCCEEE
T ss_conf 9998664488013123448887323531011578999999999---8676-40-------33245---430012798699
Q ss_pred EEEEEEEECCCCCEEE
Q ss_conf 2699988158997079
Q gi|254781165|r 181 DRLLFSRETIAGKWTQ 196 (201)
Q Consensus 181 dR~~y~~~~~~~~W~~ 196 (201)
.|+.|.-....|+|-.
T Consensus 84 VrF~YE~~d~~gqW~R 99 (143)
T pfam07080 84 VRFAYEWHDDSGQWFR 99 (143)
T ss_pred EEEEEEEECCCCCCHH
T ss_conf 9988764067886636
No 22
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=77.00 E-value=0.38 Score=26.68 Aligned_cols=65 Identities=22% Similarity=0.298 Sum_probs=47.0
Q ss_pred HHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEHHEEECCEEEEEECCCCCCHHHHHCCCCEEEEEE
Q ss_conf 999998588895579998585998773221013000033058995178520122311894799973
Q gi|254781165|r 20 MQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFH 85 (201)
Q Consensus 20 ~~~A~~~~~~~p~a~~LaTvd~~g~p~~R~V~lr~~~~~g~~f~Tn~~S~K~~~l~~np~~al~f~ 85 (201)
+..-.+.-..++..++|||++.+|.|..-.--| .++..++.+|-.--.+-...++.||++++.|-
T Consensus 83 l~~e~~afr~~~~sv~lat~~~~g~~~~syAp~-~~~~~d~~iyis~~arh~~N~~~~p~vs~m~i 147 (245)
T COG0748 83 LTLEIEAFRLEFDSVALATLRERGLPRASYAPL-YVDDGDYYIYISEIARHARNLGFNPKVSVMFI 147 (245)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCE-EECCCCEEEEEEHHHHHHHCCCCCCCHHHHEE
T ss_conf 118899877364227776652427767886865-85289559997569998635576876566322
No 23
>pfam04612 GspM General secretion pathway, M protein. This is a family of membrane proteins involved in the secretion of a number of molecules in Gram-negative bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the EpsM protein interacts with the EpsL protein, and also forms homodimers.
Probab=75.17 E-value=6.5 Score=19.56 Aligned_cols=44 Identities=25% Similarity=0.454 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEHH
Q ss_conf 69799999999999985888955799985859987732210130
Q gi|254781165|r 10 DVVFTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIK 53 (201)
Q Consensus 10 ~~P~~lf~~W~~~A~~~~~~~p~a~~LaTvd~~g~p~~R~V~lr 53 (201)
+-||+.+-.|+.+......-....+.|+-.+..|.+++|.++++
T Consensus 114 ~v~f~~ll~WL~~Le~~~gi~V~~~~l~~~~~~G~V~v~~~l~~ 157 (159)
T pfam04612 114 PVPFNALLAWLEELEQQQGVRVEELDLDRADEPGLVSVRRLLLR 157 (159)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEEEEC
T ss_conf 78999999999999882792599987772799977999999742
No 24
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=64.62 E-value=7.4 Score=19.21 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=51.9
Q ss_pred EEEEHHEEECCEEEEEECCCCCCHHHHHCCCC---------EEEEEECCCCEEEEEEEEEEECCCHHHHHHHHHCCCCCC
Q ss_conf 21013000033058995178520122311894---------799973666408999998752176378889752388333
Q gi|254781165|r 48 RVVLIKHFDQEGFVFYTNSQSPKGKEILENPK---------ASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRES 118 (201)
Q Consensus 48 R~V~lr~~~~~g~~f~Tn~~S~K~~~l~~np~---------~al~f~w~~~~rQiRi~G~~~~l~~~~~d~yf~~Rp~~s 118 (201)
-.+++|++|+.=+.=++-+..-+-.+|.+.|. +.++..-.+-+|+|-+-|.++--...-+++||.-+..+.
T Consensus 176 ~~~l~rGfdd~f~~PhSR~t~~~~e~i~~~~~LeIL~es~e~G~~l~a~k~~r~ifv~gH~EYD~~tL~~EY~RD~~~gl 255 (307)
T COG1897 176 HSLLTRGFDDSFLAPHSRYTDVPKEDILAVPDLEILAESKEAGVYLLASKDGRNIFVTGHPEYDATTLAQEYFRDVEAGL 255 (307)
T ss_pred CCHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC
T ss_conf 62644267743237642224579999842898513432664536898627777678717741025678899876553178
Q ss_pred CE
Q ss_conf 50
Q gi|254781165|r 119 KI 120 (201)
Q Consensus 119 qi 120 (201)
.+
T Consensus 256 ~~ 257 (307)
T COG1897 256 NP 257 (307)
T ss_pred CC
T ss_conf 98
No 25
>TIGR01523 ATPase-IID_K-Na potassium/sodium efflux P-type ATPase, fungal-type; InterPro: IPR006414 Initially described as a calcium efflux ATPase , more recent work has shown that the Schizosaccharomyces pombe CTA3 gene is in fact a potassium ion efflux pump . These sequences form the clade which represents the fungal P-type ATPases which are responsible for potassium and sodium efflux. The degree to which these pumps show preference for sodium or potassium varies. This group of ATPases has been classified by phylogentic analysis as type IID . ; GO: 0015662 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism, 0006812 cation transport, 0016021 integral to membrane.
Probab=49.48 E-value=6.4 Score=19.59 Aligned_cols=79 Identities=16% Similarity=0.090 Sum_probs=44.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEHHEEECCEE-EEEECCCCCCHHHHHCCCCE
Q ss_conf 44488987697999999999999858889557999858599877322101300003305-89951785201223118947
Q gi|254781165|r 2 KQDVPINNDVVFTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGF-VFYTNSQSPKGKEILENPKA 80 (201)
Q Consensus 2 ~~d~~~~~~~P~~lf~~W~~~A~~~~~~~p~a~~LaTvd~~g~p~~R~V~lr~~~~~g~-~f~Tn~~S~K~~~l~~np~~ 80 (201)
+.|+| .+.|.++|..||+-|. .|+||||.++.. ....++--+=+|=.+ +|-+-.+-=|-.-++.|..+
T Consensus 420 ~~DlP--~~~~~D~F~~~L~T~~--------L~N~~TV~k~~~-T~~W~~~G~PTEIA~~VF~~~~~~G~~~~~~~N~~~ 488 (1001)
T TIGR01523 420 EKDLP--EDIDSDLFIKLLKTAA--------LANLATVFKDDE-TDEWKVKGDPTEIALQVFAKKFDLGKKDLLKSNEFV 488 (1001)
T ss_pred HCCCC--CCCCHHHHHHHHHHHH--------HHHHHHHCCCCC-CCCEEEECCCHHHHHHHHHHHHCCCHHHHHHCCCEE
T ss_conf 25888--8887255789998887--------656654215666-661255058504577789876225513444105503
Q ss_pred EEEEECCCCEE
Q ss_conf 99973666408
Q gi|254781165|r 81 SLCFHWKSLAR 91 (201)
Q Consensus 81 al~f~w~~~~r 91 (201)
+=-=|+-+++|
T Consensus 489 ~EyPFDS~~KR 499 (1001)
T TIGR01523 489 AEYPFDSEVKR 499 (1001)
T ss_pred EECCCCCCEEE
T ss_conf 31688875046
No 26
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.89 E-value=26 Score=16.01 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=51.2
Q ss_pred CEEEEEEECCCCCEEEEEEEHHEEECCE--EEEEECCCCCCHHHHHCCCCEEEEEECCCC----EEEEEEEEEEECCCHH
Q ss_conf 5799985859987732210130000330--589951785201223118947999736664----0899999875217637
Q gi|254781165|r 32 HAVVLATADRMGFPNARVVLIKHFDQEG--FVFYTNSQSPKGKEILENPKASLCFHWKSL----ARQLRVRGLVEKYCDL 105 (201)
Q Consensus 32 ~a~~LaTvd~~g~p~~R~V~lr~~~~~g--~~f~Tn~~S~K~~~l~~np~~al~f~w~~~----~rQiRi~G~~~~l~~~ 105 (201)
+..+++-.+. |.|-.---. =-||++. |++.|.-..+.++-+..|+.||.+..=++- -+-|..+|..+.++.+
T Consensus 13 ~v~Tw~~~~e-~~~w~asaf-YvFDek~~ali~~T~e~TrHa~l~~~ns~VAgtv~~qsKtva~ikGVQfkge~~~l~~~ 90 (145)
T COG3787 13 HVLTWCVQQE-GELWCASAF-YVFDEKNVALIILTEEKTRHAQLSGPNSAVAGTVAGQSKTVALIKGVQFKGEISRLSGE 90 (145)
T ss_pred HEEEEEEECC-CCEEEEEEE-EEECCCCEEEEEEECCCHHHHHHHCCCCCEEEEECCCCEEEEEEEEEEEEEEEHHHHCC
T ss_conf 4443443048-951444267-88715532799983662057786177874256732686345534303664412243120
Q ss_pred HHHH
Q ss_conf 8889
Q gi|254781165|r 106 ASDH 109 (201)
Q Consensus 106 ~~d~ 109 (201)
++|.
T Consensus 91 q~~~ 94 (145)
T COG3787 91 QSDA 94 (145)
T ss_pred HHHH
T ss_conf 4899
No 27
>pfam05868 Rotavirus_VP7 Rotavirus major outer capsid protein VP7. This family consists of several Rotavirus major outer capsid protein VP7 sequences. The rotavirus capsid is composed of three concentric protein layers. Proteins VP4 and VP7 comprise the outer layer. VP4 forms spikes and is the viral attachment protein. VP7 is a glycoprotein and the major constituent of the outer protein layer.
Probab=41.69 E-value=23 Score=16.38 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=16.0
Q ss_pred HEEECCEEEEEECCCCCCHHHHHCCCCEEEEEEC
Q ss_conf 0000330589951785201223118947999736
Q gi|254781165|r 53 KHFDQEGFVFYTNSQSPKGKEILENPKASLCFHW 86 (201)
Q Consensus 53 r~~~~~g~~f~Tn~~S~K~~~l~~np~~al~f~w 86 (201)
-++++.|++|+++..+--++-|..++.+-.+++.
T Consensus 169 PEfT~~GYtf~s~~~fY~CqRi~e~~win~h~fy 202 (249)
T pfam05868 169 PEFTEMGYVFHSNDHFYICERISEGNWINYHLFY 202 (249)
T ss_pred CCCCCCCEEEEECCCEEEEEEECCCCCEEEEEEE
T ss_conf 1204561589836988899880578707999997
No 28
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase homolog; InterPro: IPR011758 Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (IPR004666 from INTERPRO), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown..
Probab=41.49 E-value=8.9 Score=18.75 Aligned_cols=37 Identities=16% Similarity=0.364 Sum_probs=26.2
Q ss_pred EEEEECCCCCEEEEEEEHHEEECCE-EEEEECCCCCCH
Q ss_conf 9985859987732210130000330-589951785201
Q gi|254781165|r 35 VLATADRMGFPNARVVLIKHFDQEG-FVFYTNSQSPKG 71 (201)
Q Consensus 35 ~LaTvd~~g~p~~R~V~lr~~~~~g-~~f~Tn~~S~K~ 71 (201)
++-|++=.|.|..|++|||++=--. +..-|..+-=|+
T Consensus 147 ~F~~~SYeGVPDiRiIVf~GyPVmaM~RlpTr~SdGKA 184 (320)
T TIGR02291 147 LFESVSYEGVPDIRIIVFKGYPVMAMLRLPTRASDGKA 184 (320)
T ss_pred CCCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCC
T ss_conf 44771113458726896418610210027656788830
No 29
>PRK01617 hypothetical protein; Provisional
Probab=37.87 E-value=32 Score=15.54 Aligned_cols=38 Identities=21% Similarity=0.504 Sum_probs=26.3
Q ss_pred CCCEEEEEEEEE---------EEEC-----CCCCCCCCEEEEEEEECCCCCEEE
Q ss_conf 973279997007---------9961-----378986402699988158997079
Q gi|254781165|r 157 VWWHGFRICPLS---------IEFW-----SERPYRLHDRLLFSRETIAGKWTQ 196 (201)
Q Consensus 157 ~~w~g~~i~P~~---------iEFw-----~~~~~rlHdR~~y~~~~~~~~W~~ 196 (201)
..|.|+.|.-.. |||= .++...+|+|=+|.|+ +|.|--
T Consensus 73 ~~W~~LeI~~~~~g~~~~~g~VeF~A~y~~~~~~~~lhE~S~F~r~--dg~W~Y 124 (151)
T PRK01617 73 TEWLGLTVFEHTWGDADNEGFVSFIARFTEGGKTGAIIERSRFLKE--NGQWYY 124 (151)
T ss_pred CEECEEEEEECCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEEEEE--CCEEEE
T ss_conf 7111049997447888966899999999939966779882478999--999999
No 30
>PRK02250 hypothetical protein; Provisional
Probab=37.44 E-value=32 Score=15.50 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=27.4
Q ss_pred CCCEEEEEEEEE---------EEEC-----CCCCCCCCEEEEEEEECCCCCEEE
Q ss_conf 973279997007---------9961-----378986402699988158997079
Q gi|254781165|r 157 VWWHGFRICPLS---------IEFW-----SERPYRLHDRLLFSRETIAGKWTQ 196 (201)
Q Consensus 157 ~~w~g~~i~P~~---------iEFw-----~~~~~rlHdR~~y~~~~~~~~W~~ 196 (201)
..|.|+.|.-.. |||- .++...+|+|=+|.|+ +|.|--
T Consensus 71 ~~W~~LeI~~t~~g~~~~~g~VeF~A~y~~~g~~~~lhE~S~F~r~--~g~W~Y 122 (166)
T PRK02250 71 SDWLKLEVIKAEAGSNENEGFVEFNAYFDEDGKRYCLTERSRFLKE--DGLWYY 122 (166)
T ss_pred CCEEEEEEEEECCCCCCCEEEEEEEEEEEECCCEEEEEEEEEEEEE--CCEEEE
T ss_conf 7631469998027888965899999999809988778870188999--999999
No 31
>PRK00183 hypothetical protein; Provisional
Probab=32.68 E-value=39 Score=15.05 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=27.2
Q ss_pred CCCCEEEEEEEEE----------EEEC-----CCCCCCCCEEEEEEEECCCCCEEE
Q ss_conf 7973279997007----------9961-----378986402699988158997079
Q gi|254781165|r 156 PVWWHGFRICPLS----------IEFW-----SERPYRLHDRLLFSRETIAGKWTQ 196 (201)
Q Consensus 156 P~~w~g~~i~P~~----------iEFw-----~~~~~rlHdR~~y~~~~~~~~W~~ 196 (201)
...|-|+.|.-.+ |||= .++...+|+|=+|.|+ +|.|--
T Consensus 72 ~~~Wl~LeI~~~~~~~~~~~~G~VEF~A~y~~~~~~~~~hE~S~F~r~--~G~W~Y 125 (157)
T PRK00183 72 QSTWLGLEVESSEVLGGQPEHAFVTFTARWHDQDGEHAHRERSAFVQR--QGRWYF 125 (157)
T ss_pred CCEEECCEEEEEECCCCCCCEEEEEEEEEEEECCCCEEEEEECEEEEE--CCEEEE
T ss_conf 883701089983358888862799999999938983467462206998--999999
No 32
>pfam06591 Phage_T4_Ndd T4-like phage nuclear disruption protein (Ndd). This family consists of several nuclear disruption (Ndd) proteins from T4-like phages. Early in a bacteriophage T4 infection, the phage ndd gene causes the rapid destruction of the structure of the Escherichia coli nucleoid. The targets of Ndd action may be the chromosomal sequences that determine the structure of the nucleoid.
Probab=30.81 E-value=42 Score=14.86 Aligned_cols=56 Identities=27% Similarity=0.294 Sum_probs=36.2
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEEHHEEE-CCEEEEEECCCCCCHHHHHCCCCEEEEEEC
Q ss_conf 88955799985859987732210130000-330589951785201223118947999736
Q gi|254781165|r 28 SHDPHAVVLATADRMGFPNARVVLIKHFD-QEGFVFYTNSQSPKGKEILENPKASLCFHW 86 (201)
Q Consensus 28 ~~~p~a~~LaTvd~~g~p~~R~V~lr~~~-~~g~~f~Tn~~S~K~~~l~~np~~al~f~w 86 (201)
....-|-++|||.. |.=-.-+-+-|+|. ..||.||.. .+.-++.+ .||-|+.-||-
T Consensus 9 ll~aga~vva~vk~-ge~~~g~~v~k~~~s~~gfyffvk-g~~d~r~f-snp~vaarf~v 65 (154)
T pfam06591 9 LLAAGAEVIATIKG-GEWFLGSEVHKDFLSKEGFYFFVK-GKLDGRPF-SNPCVAARFFV 65 (154)
T ss_pred HHHCCCEEEEEEEC-CEEECCCCCHHHHHCCCCEEEEEE-CCCCCCCC-CCCCEEEEEEE
T ss_conf 65358569999838-665248820255643896499996-24577656-78515899986
No 33
>KOG0092 consensus
Probab=30.11 E-value=43 Score=14.79 Aligned_cols=13 Identities=15% Similarity=-0.028 Sum_probs=6.2
Q ss_pred CCCHHHHHHHHHC
Q ss_conf 1763788897523
Q gi|254781165|r 101 KYCDLASDHYYAS 113 (201)
Q Consensus 101 ~l~~~~~d~yf~~ 113 (201)
.++-++++.|-.+
T Consensus 127 ~V~~~ea~~yAe~ 139 (200)
T KOG0092 127 EVEFEEAQAYAES 139 (200)
T ss_pred CCCHHHHHHHHHH
T ss_conf 5468888989985
No 34
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.16 E-value=20 Score=16.68 Aligned_cols=78 Identities=15% Similarity=0.357 Sum_probs=43.7
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC---CCCCCCCCCCEEEEEEEEEEEECCCCCCCCCEE
Q ss_conf 88897523883335026621776567877778888888887505---788779797327999700799613789864026
Q gi|254781165|r 106 ASDHYYASRPRESKIGAWASKQSQKMPSLDDLQKSVQRYSSFYQ---EKEIPRPVWWHGFRICPLSIEFWSERPYRLHDR 182 (201)
Q Consensus 106 ~~d~yf~~Rp~~sqi~a~~s~QS~~i~s~~~l~~~~~~~~~~~~---~~~ip~P~~w~g~~i~P~~iEFw~~~~~rlHdR 182 (201)
.+..-|++|.+..-.+|+... +.--++.++....+++.+... +.++. |+|+ -|.|.-..+|+..|
T Consensus 20 ~aed~wnsrdp~kv~layt~d--s~wrnraef~~gre~i~~fl~rkw~re~~-------yrli---kelwaf~gnriavr 87 (154)
T COG3558 20 MAEDAWNSRDPAKVALAYTED--SFWRNRAEFFQGREKIQEFLTRKWDRELE-------YRLI---KELWAFTGNRIAVR 87 (154)
T ss_pred HHHHCCCCCCHHHEEEEECCC--HHHHHHHHHHCCHHHHHHHHHHHHHHHHH-------HHHH---HHHHHHCCCEEEEE
T ss_conf 867202457801413332441--35664899970499999999865537777-------9999---99986538837999
Q ss_pred EEEEEECCCCCEE
Q ss_conf 9998815899707
Q gi|254781165|r 183 LLFSRETIAGKWT 195 (201)
Q Consensus 183 ~~y~~~~~~~~W~ 195 (201)
+.|.-...+|+|-
T Consensus 88 fayew~dd~g~wf 100 (154)
T COG3558 88 FAYEWHDDSGQWF 100 (154)
T ss_pred EEEEEECCCCHHH
T ss_conf 8676644655679
No 35
>pfam03088 Str_synth Strictosidine synthase. Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyses the condensation of tryptamine with secologanin to form strictosidine.
Probab=28.00 E-value=47 Score=14.58 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=30.4
Q ss_pred EEECC-EEEEEECCCCCCH------HHHHCCCCEEEEEECCCCE-EEEEEEE
Q ss_conf 00033-0589951785201------2231189479997366640-8999998
Q gi|254781165|r 54 HFDQE-GFVFYTNSQSPKG------KEILENPKASLCFHWKSLA-RQLRVRG 97 (201)
Q Consensus 54 ~~~~~-g~~f~Tn~~S~K~------~~l~~np~~al~f~w~~~~-rQiRi~G 97 (201)
+|+.+ |.+.||+..++-. .-|+..+..-|+-|.|+++ ..|-+.|
T Consensus 4 di~~~~G~iYFTDsS~~~~~~~~~~~~le~~~tGRLl~ydp~t~~~~vL~~~ 55 (89)
T pfam03088 4 DVDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKD 55 (89)
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 4957899999977876358788898986579975399995999948994218
No 36
>pfam12303 SNDH Membrane bound L-sorbosone dehydrogenase. This domain family is found in bacteria, and is approximately 140 amino acids in length. There are two conserved sequence motifs: LPNGD and LLRD. SNDH converts L-sorbosone to 2-keto-L-gulonic acid.
Probab=27.29 E-value=20 Score=16.72 Aligned_cols=10 Identities=30% Similarity=0.637 Sum_probs=3.7
Q ss_pred EEEEHHEEEC
Q ss_conf 2101300003
Q gi|254781165|r 48 RVVLIKHFDQ 57 (201)
Q Consensus 48 R~V~lr~~~~ 57 (201)
|++|||+-|.
T Consensus 113 RItLLRD~dg 122 (140)
T pfam12303 113 RITLLRDADG 122 (140)
T ss_pred EEEEEECCCC
T ss_conf 4798652799
No 37
>PRK01752 hypothetical protein; Provisional
Probab=25.03 E-value=53 Score=14.25 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=27.9
Q ss_pred CCCCEEEEEEE--------EEEEEC-----CCCCCCCCEEEEEEEECCCCCEEE
Q ss_conf 79732799970--------079961-----378986402699988158997079
Q gi|254781165|r 156 PVWWHGFRICP--------LSIEFW-----SERPYRLHDRLLFSRETIAGKWTQ 196 (201)
Q Consensus 156 P~~w~g~~i~P--------~~iEFw-----~~~~~rlHdR~~y~~~~~~~~W~~ 196 (201)
.-.|.|+.|.- ..|||= .++...+|+|=+|.|. +|.|--
T Consensus 76 ~~~WlgLeI~~~~~~~~~~g~VeF~A~y~~~~~~~~~hE~S~F~r~--~g~W~Y 127 (157)
T PRK01752 76 TTTWLGLEIIAHQSLTKIHSAVEFKAFFQTEEGEQAHHELSLFVKI--DNRWYF 127 (157)
T ss_pred CCEEEEEEEEECCCCCCCCEEEEEEEEEEECCCEEEEEEEEEEEEE--CCEEEE
T ss_conf 6736335999746788872599999999949966889985588998--999999
No 38
>COG4430 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.23 E-value=27 Score=15.97 Aligned_cols=126 Identities=17% Similarity=0.209 Sum_probs=62.4
Q ss_pred CCHHHH--HHHHHHHHHHCCCCCCCEEEEEEECCCCCEEE-----E-EEEHHEEECC-EEEEEECCCCCCHHHHHCCCCE
Q ss_conf 697999--99999999985888955799985859987732-----2-1013000033-0589951785201223118947
Q gi|254781165|r 10 DVVFTL--LSQWMQEAQSSESHDPHAVVLATADRMGFPNA-----R-VVLIKHFDQE-GFVFYTNSQSPKGKEILENPKA 80 (201)
Q Consensus 10 ~~P~~l--f~~W~~~A~~~~~~~p~a~~LaTvd~~g~p~~-----R-~V~lr~~~~~-g~~f~Tn~~S~K~~~l~~np~~ 80 (201)
++-++. |..|+.+-.....--.+ |-|.-+-+ |.++. + +||+-++-+. .+.|+.- .++ ..+.-
T Consensus 11 ~~F~dk~~~~~W~ee~~~lr~~v~~-~~l~e~~k-w~~pcy~~e~~nvaL~~Gf~d~~~l~f~~~---~ll----~D~~~ 81 (200)
T COG4430 11 DEFLDKQEFRTWLEEFKALRIIVWD-CELEEVAK-WMHPCYTNEAKNVALCHGFIDYCALLFHKG---ALL----LDEDG 81 (200)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHE-EEEHHHHC-CCCCCCCCCCCCEEEEECHHHHHHHHHHCC---CCC----CCCCC
T ss_conf 7774130378899998657765411-34305224-688752035576787500688889987501---012----17543
Q ss_pred EEEEECCC--CEEEEEEEEEEECCCHHHH-HHHHHCCCCCCCEEEE-ECCCCCCCCCHHHHHHHHHHH
Q ss_conf 99973666--4089999987521763788-8975238833350266-217765678777788888888
Q gi|254781165|r 81 SLCFHWKS--LARQLRVRGLVEKYCDLAS-DHYYASRPRESKIGAW-ASKQSQKMPSLDDLQKSVQRY 144 (201)
Q Consensus 81 al~f~w~~--~~rQiRi~G~~~~l~~~~~-d~yf~~Rp~~sqi~a~-~s~QS~~i~s~~~l~~~~~~~ 144 (201)
-|.-+-|. .-||||+.-..+....+.. ..|-..--...+.|-| +.+-+..+.=+++|++++++.
T Consensus 82 ~L~~~Tpr~q~srqirf~nv~El~e~~~mi~ayL~e~~~a~~aG~~~~~~~~~e~~IPeeLq~alda~ 149 (200)
T COG4430 82 YLQQQTPRVQASRQIRFTNVQELSEEGRMIKAYLAEAIAAEKAGRWVALKKNEELIIPEELQDALDAN 149 (200)
T ss_pred HHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf 35412887653313204269999985778999999999998547746789631057969999998607
No 39
>KOG1513 consensus
Probab=23.28 E-value=26 Score=16.07 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=29.9
Q ss_pred CCCCEEEEEECCCCEEEEEEEEEE------ECCCHHHHHHHHHC
Q ss_conf 189479997366640899999875------21763788897523
Q gi|254781165|r 76 ENPKASLCFHWKSLARQLRVRGLV------EKYCDLASDHYYAS 113 (201)
Q Consensus 76 ~np~~al~f~w~~~~rQiRi~G~~------~~l~~~~~d~yf~~ 113 (201)
.+.++-+..|=|.+++|+|++..+ .+++.+|+.++|..
T Consensus 1155 s~g~~~~qIyrPntG~q~~letl~~lskky~kVs~eEAk~~W~q 1198 (1300)
T KOG1513 1155 SDGKILFQIYRPNTGRQVKLETLASLSKKYHKVSSEEAKEHWEQ 1198 (1300)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 77637899856988864246779999876610786550247888
No 40
>KOG0290 consensus
Probab=22.59 E-value=59 Score=13.97 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=38.0
Q ss_pred EEEEEEECCCCCEEEEEEEHHEEECCEEEEEECCC-CCCHHHHHCC---CCEEEEEECCCCEEEE
Q ss_conf 79998585998773221013000033058995178-5201223118---9479997366640899
Q gi|254781165|r 33 AVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQ-SPKGKEILEN---PKASLCFHWKSLARQL 93 (201)
Q Consensus 33 a~~LaTvd~~g~p~~R~V~lr~~~~~g~~f~Tn~~-S~K~~~l~~n---p~~al~f~w~~~~rQi 93 (201)
+-++|+|++|| ++|+--||..+.- -++|-+-. +.+-.-|+-| |+.-.+|.-.+.+.||
T Consensus 209 ~~~FASvgaDG--SvRmFDLR~leHS-TIIYE~p~~~~pLlRL~wnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290 209 RDVFASVGADG--SVRMFDLRSLEHS-TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred CCEEEEECCCC--CEEEEEECCCCCC-EEEECCCCCCCCCEEECCCCCCCHHHHHHHCCCCEEEE
T ss_conf 20579954788--3788872355443-37855998887303404686781688662437860799
No 41
>KOG3374 consensus
Probab=21.66 E-value=62 Score=13.86 Aligned_cols=79 Identities=27% Similarity=0.303 Sum_probs=49.8
Q ss_pred CCCCCCE-EEEEEECC-CCCEEEEEEEHHEEECC---E-EEEEECCCCCCHHHHHCCCCEEEEEECCCCEE---------
Q ss_conf 8889557-99985859-98773221013000033---0-58995178520122311894799973666408---------
Q gi|254781165|r 27 ESHDPHA-VVLATADR-MGFPNARVVLIKHFDQE---G-FVFYTNSQSPKGKEILENPKASLCFHWKSLAR--------- 91 (201)
Q Consensus 27 ~~~~p~a-~~LaTvd~-~g~p~~R~V~lr~~~~~---g-~~f~Tn~~S~K~~~l~~np~~al~f~w~~~~r--------- 91 (201)
...+.-| .+|||-.. .|.|-+-+|-+-+=+.+ | ..||-.---.-+.++..||++.|+|-...+.+
T Consensus 53 h~~~Wgal~TlSt~e~vkG~Pf~nViS~sDg~p~~gtG~pyFyLt~Ld~t~~n~qkd~~atL~~s~~qt~~Ck~~g~DPm 132 (210)
T KOG3374 53 HRANWGALGTLSTNERVKGYPFVNVISISDGDPNNGTGRPYFYLTDLDFTGPNWQKDNKATLLFSDEQTLRCKEGGKDPM 132 (210)
T ss_pred HHCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHHCCCCCCC
T ss_conf 21440213343302010487542078736788768888437994357877733000873169960120342112798999
Q ss_pred -----EEEEEEEEECCCHH
Q ss_conf -----99999875217637
Q gi|254781165|r 92 -----QLRVRGLVEKYCDL 105 (201)
Q Consensus 92 -----QiRi~G~~~~l~~~ 105 (201)
-+.+.|.+.++.+.
T Consensus 133 ~PtC~~~mlsG~v~k~~~~ 151 (210)
T KOG3374 133 EPTCARSMLSGQVKKMDPS 151 (210)
T ss_pred CCHHHHHEECCEEEEECCC
T ss_conf 8432331442348870786
No 42
>TIGR00600 rad2 DNA excision repair protein (rad2); InterPro: IPR001044 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents XPGC, an acidic protein that confers normal UV resistance in expressing cells, can correct XP-G. It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms. XPGC cleaves one strand of the duplex at the border with the single-stranded region , .; GO: 0003697 single-stranded DNA binding, 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=20.89 E-value=64 Score=13.77 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHHCCC
Q ss_conf 979999999999998588
Q gi|254781165|r 11 VVFTLLSQWMQEAQSSES 28 (201)
Q Consensus 11 ~P~~lf~~W~~~A~~~~~ 28 (201)
+|+..|++|+.+|+....
T Consensus 978 e~L~~Fk~W~~~~q~~k~ 995 (1127)
T TIGR00600 978 EPLLKFKEWWHEAQKDKK 995 (1127)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 134456899975415787
Done!