RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781165|ref|YP_003065578.1| pyridoxamine 5'-phosphate
oxidase [Candidatus Liberibacter asiaticus str. psy62]
(201 letters)
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural
genomics, mycobacterium tuberculosis structural
proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium
tuberculosis} (A:)
Length = 246
Score = 182 bits (462), Expect = 4e-47
Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 8/190 (4%)
Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGK 72
TLL +W+ +AQ + +P+A+VLAT G P R VL K D+ G F+T+ S KG+
Sbjct: 62 LTLLRRWLNDAQRAGVSEPNAMVLATVAD-GKPVTRSVLCKILDESGVAFFTSYTSAKGE 120
Query: 73 EILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMP 132
++ P AS F W L RQ V+G V K Y++ RPR +++GAWAS+QS+ +
Sbjct: 121 QLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVG 180
Query: 133 SLDDLQKSVQRYSSFYQEK-EIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIA 191
S L + + + ++ +IP P W G+RI P +EFW R R+H+R+ +
Sbjct: 181 SRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVAN---- 236
Query: 192 GKWTQFLLYP 201
L P
Sbjct: 237 --GRLERLQP 244
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase;
HET: FMN PLP; 1.95A {Homo sapiens} (A:)
Length = 261
Score = 173 bits (438), Expect = 2e-44
Identities = 73/193 (37%), Positives = 112/193 (58%), Gaps = 3/193 (1%)
Query: 10 DVVFTLLSQWMQEAQ-SSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQS 68
+ W +EA + + +A+ LAT R G P+AR++L+K F ++GF F+TN +S
Sbjct: 56 LDPVKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFES 115
Query: 69 PKGKEILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQS 128
KGKE+ NP ASL F+W+ L RQ+RV G V+K + ++ Y+ SRP+ S+IGA S QS
Sbjct: 116 RKGKELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQS 175
Query: 129 QKMPSLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRE 188
+P + L+K + YQ++E+P+P W G+ + P +EFW + RLHDR++F R
Sbjct: 176 SVIPDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRG 235
Query: 189 TIAGKWTQFLLYP 201
L
Sbjct: 236 --LPTGDSPLGPM 246
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN
complex, oxidoreductase; HET: MSE FMN; 1.80A
{Escherichia coli} (A:)
Length = 199
Score = 169 bits (429), Expect = 2e-43
Identities = 79/189 (41%), Positives = 109/189 (57%), Gaps = 2/189 (1%)
Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGK 72
TL +W+ +A ++ DP A V+AT D G P R+VL+KH+D++G VFYTN S K
Sbjct: 13 LTLFERWLSQACEAKLADPTAXVVATVDEHGQPYQRIVLLKHYDEKGXVFYTNLGSRKAH 72
Query: 73 EILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMP 132
+I NP+ SL F W +L RQ+ V G E+ L Y+ SRPR+S+IGAW SKQS ++
Sbjct: 73 QIENNPRVSLLFPWHTLERQVXVIGKAERLSTLEVXKYFHSRPRDSQIGAWVSKQSSRIS 132
Query: 133 SLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIAG 192
+ L+ +Q+ E+P P +W GFR+ IEFW +RLHDR L+ RE
Sbjct: 133 ARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRE--ND 190
Query: 193 KWTQFLLYP 201
W L P
Sbjct: 191 AWKIDRLAP 199
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate,
oxidoreductase; HET: FMN; 1.80A {Pseudomonas
fluorescens} (A:)
Length = 222
Score = 167 bits (423), Expect = 1e-42
Identities = 54/189 (28%), Positives = 97/189 (51%), Gaps = 4/189 (2%)
Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGK 72
++L W++ A+ +P A+ LATAD G P+ R+V+I G VF T++ S KG+
Sbjct: 38 MSVLHNWLERARRVGIREPRALALATADSQGRPSTRIVVISEISDAGVVFSTHAGSQKGR 97
Query: 73 EILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMP 132
E+L NP AS +W+ ++Q+ + G + + +D + RP + + S+QS+++
Sbjct: 98 ELLHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHPMSSVSRQSEELQ 157
Query: 133 SLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIAG 192
+ ++ + ++ + +PRP + F + S+EFW RLH+RL + R
Sbjct: 158 DVQAMRNAARQLAELQG--PLPRPEGYCVFELRLESLEFWGNGQERLHERLRYDRS--DT 213
Query: 193 KWTQFLLYP 201
W L P
Sbjct: 214 GWNVRRLQP 222
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics,
PSI, protein structure initiative; HET: FMN; 2.70A
{Saccharomyces cerevisiae} (A:53-228)
Length = 176
Score = 163 bits (413), Expect = 2e-41
Identities = 70/175 (40%), Positives = 104/175 (59%), Gaps = 3/175 (1%)
Query: 30 DPHAVVLATADRM-GFPNARVVLIKHFDQEGFVFYTNSQ-SPKGKEILENPKASLCFHWK 87
P A+ ++A+ G ++R++L K D GF Y+N S K +I NP A++ F WK
Sbjct: 2 LPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYSNWGTSRKAHDIATNPNAAIVFFWK 61
Query: 88 SLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDDLQKSVQRYSSF 147
L RQ+RV G+ E S+ Y+ +RPR SKIGAWAS+QS + + ++L + Q+ +
Sbjct: 62 DLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSDVIKNREELDELTQKNTER 121
Query: 148 YQE-KEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIAGKWTQFLLYP 201
+++ ++IP P +W G RI PL IEFW RP RLHDR ++ R+T W L P
Sbjct: 122 FKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRKTENDPWKVVRLAP 176
>2i51_A Uncharacterized conserved protein of COG5135; ZP_00109616.1,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE FMN; 1.40A {Nostoc punctiforme
pcc 73102} (A:)
Length = 195
Score = 162 bits (410), Expect = 4e-41
Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 7/194 (3%)
Query: 13 FTLLSQWMQEAQSSES--HDPHAVVLATADRMGFPNARVVLIKHFDQE--GFVFYTNSQS 68
+ A + LAT G P R ++ + F ++ F T+++S
Sbjct: 4 LAPWRGAIAHALHRNRSLVYARYLQLATVQPNGRPANRTLVFRGFLEDTNQLRFITDTRS 63
Query: 69 PKGKEILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYA-SRPRESKIGAWASKQ 127
K +I + P A +C+++ + Q R G + S +R + + A++
Sbjct: 64 AKADQIQQQPWAEICWYFPNTREQFRXAGDLTLISSDDSHQDLQPARIAXWQELSDAARL 123
Query: 128 SQKMPSLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSR 187
P + I + + P+ ++ R + L
Sbjct: 124 QFGWPYPGKPRIKESGAFEPSPPDPIEPVPNFCLLLLDPVQVDHLELRGEPQNRWLYHRN 183
Query: 188 ETIAGKWTQFLLYP 201
+ +W+ + P
Sbjct: 184 D--QQEWSSEAINP 195
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding;
YP_508196.1, structural genomics, joint center for
structural genomics, JCSG; HET: MSE FMN; 1.60A
{Jannaschia SP} (A:)
Length = 175
Score = 126 bits (317), Expect = 2e-30
Identities = 25/191 (13%), Positives = 56/191 (29%), Gaps = 28/191 (14%)
Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEG--FVFYTNSQSPK 70
+ Q H LAT G P+ R ++++ F+T++ SPK
Sbjct: 11 LDTVWQQFGRGTKDRHHPARHPTLATIGTDG-PDLRTLVLRAASHAEATLEFHTDAASPK 69
Query: 71 GKEILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQK 130
I + + ++ + Q+R + + + + +A P ++
Sbjct: 70 VAHIRRDARVAIHIWIPKASLQVRAKAIAKILPG--DPNLFAQLPEAARXNYQGPVPGTP 127
Query: 131 MPSLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETI 190
+P+ + P + I+ H R +++
Sbjct: 128 LPA-----------------EPDATPNRFTRLICHLSEIDVLHLT--TPHQRAVYTAP-- 166
Query: 191 AGKWTQFLLYP 201
W + P
Sbjct: 167 --DWRGIWVSP 175
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; ZP_00875725.1,
structural genomics, joint center for structural
genomics, JCSG; 2.00A {Streptococcus suis 89} (A:)
Length = 150
Score = 118 bits (297), Expect = 5e-28
Identities = 23/153 (15%), Positives = 50/153 (32%), Gaps = 7/153 (4%)
Query: 19 WMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENP 78
+++ D V AT D G P+AR I ++EG F T+ ++ ++ +
Sbjct: 3 ELKDIXH-ILEDXKVGVFATLDEYGNPHARHAHITAANEEGIFFXTSPETHFYDQLXGDQ 61
Query: 79 KASLCFHWK--SLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDD 136
+ + + L + +RV G + +A P I S + ++ +
Sbjct: 62 RVAXTAISEEGYLIQVVRVEGTARPVENDYLKTVFADNPYYQHIYKDESSDTXQVFQIYA 121
Query: 137 LQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSI 169
+ + G ++
Sbjct: 122 GHGFYHSLT----QGHKYIFSIGQGEHSEVRAL 150
>2qea_A Putative general stress protein 26; YP_508897.1, structural
genomics, joint center for structural genomics, JCSG,
protein structure initiative; 2.46A {Jannaschia SP} (A:)
Length = 160
Score = 111 bits (279), Expect = 6e-26
Identities = 13/175 (7%), Positives = 32/175 (18%), Gaps = 32/175 (18%)
Query: 20 MQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPK 79
+ D + L + F T + K + P+
Sbjct: 5 LTHEFWDRLEDVRSGXLGIKGQGRLIPXSPQTDD-DAPGAIWFITAKGTDLAKGVAAGPQ 63
Query: 80 ASLC-FHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDDLQ 138
+ + G +E+ D + + S ++
Sbjct: 64 PAQFVVSDDGEGLYADLDGTLERSTDREALDEFWSFVADAWFDGG--------------- 108
Query: 139 KSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIAGK 193
+ P S E ++ + +
Sbjct: 109 ---------------QHDPDVCLLKFTPASGEISITEGGGARFLYEIAKAHLTDE 148
>3dmb_A Putative general stress protein 26 with A PNP- oxidase like
fold; structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 2.30A {Xanthomonas campestris
PV} (A:)
Length = 147
Score = 111 bits (278), Expect = 8e-26
Identities = 15/164 (9%), Positives = 31/164 (18%), Gaps = 31/164 (18%)
Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEG-FVFYTNSQSPKGKEILE 76
+ +Q+ V L D G F+T+ + + +
Sbjct: 6 KELQDKFWKALKSDRTVXLGLDGVEDGHARPXTAQIEGDSGGPIWFFTSKDNALIAXLGQ 65
Query: 77 NPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDD 136
+ F K + G + + D A + +
Sbjct: 66 GRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGG------------- 112
Query: 137 LQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLH 180
R+ + W L
Sbjct: 113 -----------------KDDPKLALLRLDADHAQIWLNGSSLLA 139
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate,
structural genomics, PSI, protein structure initiative;
HET: PLP; 1.70A {Mycobacterium tuberculosis} (A:)
Length = 147
Score = 110 bits (276), Expect = 1e-25
Identities = 18/160 (11%), Positives = 35/160 (21%), Gaps = 18/160 (11%)
Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFV-FYTNSQSPKGKEILE 76
Q + + VLAT G P V ++ + K + +
Sbjct: 4 QVFDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRR 63
Query: 77 NPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDD 136
+P+AS+ G + A+ + A + S
Sbjct: 64 DPRASILVDADDGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHSDWDD---- 119
Query: 137 LQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERP 176
+ Q R + +
Sbjct: 120 ----------YRQAMVTDR---RVLLTLPISHVYGLPPGM 146
>2htd_A Predicted flavin-nucleotide-binding protein from COG3576
family structurally related...; ZP_00387536.1,
structural genomics; HET: MSE; 1.60A {Lactobacillus
delbrueckii subsp} (A:)
Length = 140
Score = 106 bits (267), Expect = 2e-24
Identities = 15/113 (13%), Positives = 27/113 (23%), Gaps = 1/113 (0%)
Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNAR-VVLIKHFDQEGFVFYTNSQSPKGKEILE 76
+ + V LAT D G P D + ++ + I
Sbjct: 25 TNKLTEEQVNLFKNNLVYLATVDADGNPQVGPKGSXTVLDPSHLQYLEKTKGEAYENIKR 84
Query: 77 NPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQ 129
K +L +RV E + D ++ +
Sbjct: 85 GSKVALVAADVPSHTAVRVLATAEVHEDDDYAKKVLAKTEFPNAFVVNLNIEE 137
>2i02_A General stress protein of COG3871; ZP_00108720.1, ,
structural genomics, PSI-2, protein structure
initiative; HET: MSE FMN P33; 1.80A {Nostoc punctiforme
pcc 73102} (A:)
Length = 148
Score = 104 bits (260), Expect = 9e-24
Identities = 15/175 (8%), Positives = 37/175 (21%), Gaps = 32/175 (18%)
Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNAR--VVLIKHFDQEGFVFYTNSQSPK 70
+ + + T D G ++ + F+T + S K
Sbjct: 4 TSTDRTQEIQKLHELIKNIDYGXFTTVDDDGSLHSYPXSKSGDINSEATLWFFTYAGSHK 63
Query: 71 GKEILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQK 130
EI + + ++ F R + + G + D ++
Sbjct: 64 VTEIEHHEQVNVSFSSPEQQRYVSISGTSQLVKDRNKXRELWKPELQTWFPKG------- 116
Query: 131 MPSLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLF 185
++ + +W + F
Sbjct: 117 -----------------------LDEPDIALLKVNINQVNYWDSTSSFKPQTISF 148
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN
binding, PSI, protein structure initiative; 2.00A
{Mycobacterium tuberculosis H37RV} (A:)
Length = 162
Score = 100 bits (251), Expect = 1e-22
Identities = 22/161 (13%), Positives = 37/161 (22%), Gaps = 25/161 (15%)
Query: 30 DPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCF---HW 86
LAT G P+ T ++S K + +P+ S
Sbjct: 21 SSRTGTLATIGPDGQPHLTAXW-YAVIDGEIWLETKAKSQKAVNLRRDPRVSFLLEDGDT 79
Query: 87 KSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDDLQKSVQRYSS 146
R + G+ E + + H E G + + + +
Sbjct: 80 YDTLRGVSFEGVAEIVEEPEALHRVGVSVWERYTGPYTDEXKPXVDQXXN---------- 129
Query: 147 FYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSR 187
G RI W R L +
Sbjct: 130 -----------KRVGVRIVARRTRSWDHRKLGLPHXSVGGS 159
>2ig6_A NIMC/NIMA family protein; NP_349178.1, structural genomics,
PSI-2, protein structure initiative, joint center for
structural genomics; HET: FMN; 1.80A {Clostridium
acetobutylicum} (A:)
Length = 150
Score = 100 bits (250), Expect = 1e-22
Identities = 18/169 (10%), Positives = 36/169 (21%), Gaps = 34/169 (20%)
Query: 16 LSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEIL 75
L + + LAT + P R + +N+ K+ +
Sbjct: 15 LYFQGXKRALEFLKECGVFYLATNEG-DQPRVRPFGAVFEYEGKLYIVSNNTKKCFKQXI 73
Query: 76 ENPKASLCFHWKSLARQLRVRGLVEKYCDLA-SDHYYASRPRESKIGAWASKQSQKMPSL 134
+NPK + K + +R+ G V + + P +
Sbjct: 74 QNPKVEISGXNKK-GQWIRLTGEVANDDRREVKELALEAVPSLKNXYSVDDGI------- 125
Query: 135 DDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRL 183
+ S + L
Sbjct: 126 ------------------------FAVLYFTKGEGTICSFKGENETFSL 150
>2re7_A Uncharacterized protein; YP_263493.1, general stress protein
COG3871, pyridoxamine 5'-phosphate oxidase, structural
genomics; 2.50A {Psychrobacter arcticus 273-4} (A:)
Length = 134
Score = 100 bits (250), Expect = 1e-22
Identities = 18/157 (11%), Positives = 41/157 (26%), Gaps = 32/157 (20%)
Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEG--FVFYTNSQSPKGKEIL 75
Q + + D ++T+++ G +A + + F + S K+I
Sbjct: 5 QKHIDKIQAVIKDVKFAXISTSNKKGDIHAWPXTTSEVNLDNKEIWFIGDKTSDVVKDIQ 64
Query: 76 ENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLD 135
++ + L + + + + G E D A S +
Sbjct: 65 DDARIGLTYATQDEKNYVSISGDAELPTDKAKLDELWSPVYSAFFA-------------- 110
Query: 136 DLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFW 172
++ P +E W
Sbjct: 111 ----------------NGKEDANIQLIKVVPHGVECW 131
>2hq7_A Protein, related to general stress protein 26(GS26) of
B.subtilis; NP_350077.1, joint center for structural
genomics, JCSG; 2.00A {Clostridium acetobutylicum} (A:)
Length = 146
Score = 99.0 bits (246), Expect = 4e-22
Identities = 21/171 (12%), Positives = 40/171 (23%), Gaps = 32/171 (18%)
Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEG-FVFYTNSQSPKGKEILE 76
+++ E+ V + T G+PN + D F TN+ + + + +
Sbjct: 6 KFLIESNE-LVESSKIVXVGTNGENGYPNIKAXXRLKHDGLKKFWLSTNTSTRXVERLKK 64
Query: 77 NPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDD 136
N K L F + L + G +E D AS + E
Sbjct: 65 NNKICLYFVDDNKFAGLXLVGTIEILHDRASKEXLWTDGCEIYYPLG------------- 111
Query: 137 LQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSR 187
+ ++
Sbjct: 112 -----------------IDDPDYTALCFTAEWGNYYRHLKNITFKIDEIYN 145
>2fhq_A Putative general stress protein; alpha-beta structure,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.87A {Bacteroides thetaiotaomicron vpi-5482}
(A:)
Length = 141
Score = 96.5 bits (240), Expect = 2e-21
Identities = 27/167 (16%), Positives = 45/167 (26%), Gaps = 34/167 (20%)
Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVF-YTNSQSPKGKEILE 76
+ +E V LA+ ++ G+P + ++ T + S K + L
Sbjct: 7 KTXKEKAVELLQKCEVVTLASVNKEGYPRPVPXSKIAAEGISTIWXSTGADSLKTIDFLS 66
Query: 77 NPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDD 136
NPKA LCF K + + G VE D
Sbjct: 67 NPKAGLCFQEKG--DSVALXGEVEVVTDEKLKQELWQDWFIEHFP--------------- 109
Query: 137 LQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRL 183
P + + +W E +H +L
Sbjct: 110 ---------------GGPTDPGYVLLKFTANHATYWIEGT-FIHKKL 140
>1vl7_A Hypothetical protein ALR5027; 17134165, structural genomics,
JCSG, protein structure initiative, PSI, joint center
for structural genomics; 1.50A {Nostoc SP} (A:)
Length = 157
Score = 96.3 bits (239), Expect = 3e-21
Identities = 20/181 (11%), Positives = 40/181 (22%), Gaps = 38/181 (20%)
Query: 1 MKQDVPINNDVVFTLLSQWMQEAQSSES--HDPHAVVLATADRMGFPNARVVLIKHFDQE 58
M D +SQ + + + +++T G PN D +
Sbjct: 1 MGSDKI---HHHHHHMSQLEKAQAEYAGFIQEFQSAIISTISEQGIPNGSYAPFVIDDAK 57
Query: 59 GFVFYTNSQSPKGKEILENPKASLC-------FHWKSLARQLRVRGLVEKYCDLASDHYY 111
Y + + K I NP ++ + R+L +
Sbjct: 58 NIYIYVSGLAVHTKNIEANPLVNVLFVDDEAKTNQIFARRRLSFDCTATLIERESQKWNQ 117
Query: 112 ASRPRESKIGAWASKQSQKMPSLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEF 171
+ + G + F++ P F
Sbjct: 118 VVDQFQERFGQIIEVL--------------------------RGLADFRIFQLTPKEGRF 151
Query: 172 W 172
Sbjct: 152 V 152
>2iab_A Hypothetical protein; NP_828636.1, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative, PSI; 2.00A {Streptomyces
avermitilis} (A:)
Length = 155
Score = 94.4 bits (234), Expect = 9e-21
Identities = 28/183 (15%), Positives = 45/183 (24%), Gaps = 36/183 (19%)
Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGK 72
++ + + ++TA G V L +D E F+ T + SP G+
Sbjct: 6 PARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETFLVATPAASPTGR 65
Query: 73 EILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMP 132
+ E + L + V G E
Sbjct: 66 NLSETGRVRLGIGPTR--DLVLVEGTALPLEPAGLPDGVGDTFAE--------------- 108
Query: 133 SLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIAG 192
+ FRI P ++ W E L R L G
Sbjct: 109 --------------KTGFDPRRLTTSYLYFRISPRRVQAWREAN-ELSGRELXRD----G 149
Query: 193 KWT 195
+W
Sbjct: 150 EWL 152
>2q9k_A Uncharacterized protein; ZP_00539648.1, structural genomics,
joint center for structural genomics, JCSG; HET: UNL;
1.59A {Exiguobacterium sibiricum 255-15} (A:)
Length = 151
Score = 93.9 bits (233), Expect = 2e-20
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 4/118 (3%)
Query: 19 WMQEAQSSESHDPHAVVLATADR-MGFPNARVV-LIKHFDQEGFVFYTNSQSPKGKEILE 76
+ E Q D V L T D+ +P + + D+ F + S K + +
Sbjct: 9 RLSEQQXKALTDLPLVFLITHDQSKSWPITHAISWVYAKDETTIRFAIEADSLLVKTLAD 68
Query: 77 NPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSL 134
+P +L F + + + E +I
Sbjct: 69 HPVFTLIFFADQ--STYSLTCTDVAAWETTARLPLKVALYEGQIKEVRDILFYGAAVS 124
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium
tumefaciens STR. C58, structural genomics, PSI-2; 1.94A
{Agrobacterium tumefaciens str} (A:1-168)
Length = 168
Score = 93.2 bits (231), Expect = 2e-20
Identities = 15/175 (8%), Positives = 34/175 (19%), Gaps = 35/175 (20%)
Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRM-GFPNARVVLIKHFDQEGFVFYTNSQSPKG 71
H LAT D + G+P I F+ +
Sbjct: 21 SAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHA 80
Query: 72 KEILENPKASLCFHW-----KSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASK 126
+ + + S+ +L + G ++ A
Sbjct: 81 RNXETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIAR--------- 131
Query: 127 QSQKMPSLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHD 181
+ + K +R+ ++ +
Sbjct: 132 --------------------YPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASN 166
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase;
HET: HEM; 1.80A {Helicobacter pylori} (A:81-259)
Length = 179
Score = 93.2 bits (231), Expect = 2e-20
Identities = 17/171 (9%), Positives = 34/171 (19%), Gaps = 19/171 (11%)
Query: 29 HDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWKS 88
+V LAT G + D + + Y + + + NP +
Sbjct: 16 EGFDSVCLATLHPNGHVVCSYAPLX-SDGKQYYIYVSEVAEHFAGLKNNPHNVEVXFLED 74
Query: 89 LARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDDLQKSVQRYSSFY 148
S A + + + +++
Sbjct: 75 -----------------ESKAKSAILRKRLRYKTNTRFIERGAEFDKAFDSFIEKTGGAG 117
Query: 149 QEKEIPRPVWWHGFRICPLSIEFW-SERPYRLHDRLLFSRETIAGKWTQFL 198
K I +H + F + G F
Sbjct: 118 GIKTIRAXQDFHLIALDFKEGRFVKGFGQAYDILGDKIAYVGDKGNPHNFA 168
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like
protein; NP_783940.1, structural genomics; HET: MSE;
1.55A {Lactobacillus plantarum WCFS1} (A:)
Length = 145
Score = 89.6 bits (222), Expect = 3e-19
Identities = 17/152 (11%), Positives = 40/152 (26%), Gaps = 28/152 (18%)
Query: 29 HDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFY--TNSQSPKGKEILENPKASLCF-- 84
+ + L+TA + ++V ++ + Y + SP K +NP +
Sbjct: 12 QSTNKIALSTAVN-NEADVKIVNFVWYEAQPDTLYFSSVKTSPALKVYDQNPDIAFITIP 70
Query: 85 -HWKSLARQLRVRGLVEK----YCDLASDHYYASRPRESKIGAWASKQSQKMPSLDDLQK 139
+ LR + + + Y + P ++
Sbjct: 71 NDGTAGNPYLRAQHVKLQRSTKTXTDLLPQYLETVPNYQQVWDAIGSTLVVF-------- 122
Query: 140 SVQRYSSFYQEKEIPRPVWWHGFRICPLSIEF 171
E ++ G ++ F
Sbjct: 123 ----------ELKLTDLFVDAGVGGEKQTLTF 144
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural
genomics,MCSG, PSI, protein structure initiative; 2.00A
{Pseudomonas aeruginosa PAO1} (A:1-155)
Length = 155
Score = 88.9 bits (220), Expect = 4e-19
Identities = 16/162 (9%), Positives = 38/162 (23%), Gaps = 36/162 (22%)
Query: 18 QWMQEAQSSESHDPHAVVLATA--DRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEIL 75
+ + VL+T GFP VV + + + + +
Sbjct: 6 VEAAKNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQ 65
Query: 76 ENPKASLCFHWKS-----LARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQK 130
+P+ S+ + +L + + + R
Sbjct: 66 ADPRCSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRY------------- 112
Query: 131 MPSLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFW 172
F + + R + + + P+ F
Sbjct: 113 ----------------FPESADYHRVHDFDFWVLQPVQWRFI 138
>3ec6_A General stress protein 26; alpha-beta structure, structural
genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis}
(A:)
Length = 139
Score = 88.6 bits (219), Expect = 6e-19
Identities = 20/169 (11%), Positives = 43/169 (25%), Gaps = 36/169 (21%)
Query: 20 MQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPK 79
++E ++ VL+T P++ + T+ QS K +I NP
Sbjct: 4 LKEKITTIIQGQRTGVLSTVRN-DKPHSAFXXFF-HEDFVLYVATDRQSKKITDIENNPN 61
Query: 80 ASLCFHWKSL---ARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDD 136
+ + + V GL D + + + + +
Sbjct: 62 VHVLLGREGKKLDEDYIEVEGLASIEEDSTLKNKFWNNSLKRWLLRP------------- 108
Query: 137 LQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLF 185
+ +I P +I + + L
Sbjct: 109 ------------------EDPNYVLIKINPDTIYYIDGAGTTEPEFLRL 139
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding;
F420 dependent reductase, unknown function; HET: MSE;
1.23A {Mycobacterium smegmatis} (A:)
Length = 131
Score = 88.4 bits (219), Expect = 6e-19
Identities = 26/115 (22%), Positives = 36/115 (31%), Gaps = 5/115 (4%)
Query: 19 WMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENP 78
+ E S P LAT G P +D E F ++ K + I NP
Sbjct: 3 AVPEGYESLLERPLYGHLATVRPDGTPQVNAXW-FAWDGEVLRFTHTTKRQKYRNIKANP 61
Query: 79 KASLCF-HWKSLARQLRVRGLVEKYCDLASDHY---YASRPRESKIGAWASKQSQ 129
+ + R L VRGLVE + + R A K +
Sbjct: 62 AVAXSVIDPDNPYRYLEVRGLVEDIVPDPTGAFYLKLNDRYDGPLTEPPADKADR 116
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics,
PSI, protein structure initiative, TB structural
genomics consortium, TBSGC; HET: CIT; 1.60A
{Mycobacterium tuberculosis} (A:)
Length = 137
Score = 88.1 bits (218), Expect = 8e-19
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 3/113 (2%)
Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFV-FYTNSQSPKGKEILE 76
+ + + + H L T P+ V + T S K
Sbjct: 8 TRLSDDALAFLSERHLAXLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADR 67
Query: 77 NPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQ 129
+ A L + R L + G D+ + R + + +
Sbjct: 68 SGLAVLSQVDGA--RWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRV 118
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase,
structural genomics, joint center for structural
genomics, JCSG; 2.00A {Listeria innocua} (A:)
Length = 128
Score = 84.9 bits (210), Expect = 8e-18
Identities = 19/156 (12%), Positives = 39/156 (25%), Gaps = 34/156 (21%)
Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILEN 77
+++ + VL + FP+AR D + + PK +E+ N
Sbjct: 4 NELEDKILAILEQHQVGVLTSVQG-DFPHARYXTFL-HDGLTLYTPSGKELPKTEEVRRN 61
Query: 78 PKASLCF-HWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDD 136
P + + + L + GL D + +
Sbjct: 62 PHVCVLIGYDSPGSAFLEINGLASLEEDESIKERIWENISK------------------- 102
Query: 137 LQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFW 172
+ + + +I P I
Sbjct: 103 ------DWF------QGEDSPSFVVIKIVPEQIRIL 126
>2e83_A FMN-binding protein; beta sheet, electron transport; HET:
FMN; 1.52A {Desulfovibrio vulgaris str} PDB: 1axj_A*
1flm_A* 1wli_A* 1wll_A* 3a20_A* 1wlk_A* (A:)
Length = 122
Score = 81.1 bits (200), Expect = 1e-16
Identities = 12/99 (12%), Positives = 21/99 (21%), Gaps = 8/99 (8%)
Query: 30 DPHAVVLATADRMGFPNARV--VLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWK 87
+ V +AT G V +K D V + + + + +
Sbjct: 12 NEGVVAIATQGEDGPHLVNVWNSYLKVLDGNRIVVPVGGMHKTEANVARDERVLMTLGSR 71
Query: 88 ------SLARQLRVRGLVEKYCDLASDHYYASRPRESKI 120
+RG D A
Sbjct: 72 KVAGRNGPGTGFLIRGSAAFRTDGPEFEAIARFKWARAA 110
>2fg9_A 5-nitroimidazole antibiotic resistance protein; NP_811990.1,
structural genomics, joint center for structural
genomics; HET: FAD; 2.20A {Bacteroides thetaiotaomicron
vpi-5482} (A:)
Length = 178
Score = 63.5 bits (154), Expect = 2e-11
Identities = 16/155 (10%), Positives = 39/155 (25%), Gaps = 17/155 (10%)
Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILEN 77
++ S A + D G P ++ + ++ + K + + N
Sbjct: 25 IEDKQRIESIILQADACFVGITDLEGNPYVVPXNF-GYENDTLYLHSGPEGGKIEXLQRN 83
Query: 78 PKASLCFHWKSL---------------ARQLRVRGLVEKYCDLASDHYYASRPRESKIGA 122
+ F + RG VE D +
Sbjct: 84 NNVCITFSLGHKLVYQHKQVACSYSXRSESAXCRGKVEFIEDXEEKRHALDIIXRHYTKD 143
Query: 123 WASKQSQKMPSLDDLQKSVQRYSS-FYQEKEIPRP 156
S + ++ + V + + + + +P
Sbjct: 144 QFSYSDPAVRNVKVWKVPVDQXTGKVFGLRADEKP 178
>3cp3_A Uncharacterized protein; alpha-beta fold, structural
genomics, PSI-2, protein structure initiative; 2.00A
{Corynebacterium diphtheriae NCTC13129} (A:)
Length = 148
Score = 58.1 bits (140), Expect = 9e-10
Identities = 7/92 (7%), Positives = 21/92 (22%), Gaps = 5/92 (5%)
Query: 30 DPHAVVLATADRMGFPNARVVLIKHFDQEG--FVFYTNSQSPKGKEILENPKASLCF--H 85
L + + V V++ ++ K + N
Sbjct: 26 SESVGRLVVHRK-DDLDIFPVNFVLDYSAEQPRVYFRTAEGTKLFSVNLNSDVLFEVDRF 84
Query: 86 WKSLARQLRVRGLVEKYCDLASDHYYASRPRE 117
+ + ++G D + + +
Sbjct: 85 DDAEGWSVVLKGNAYVVRDTEEARHADTLGLK 116
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1,
structural genomics, joint center for structural
genomics, JCSG; HET: P33; 2.51A {Corynebacterium
glutamicum atcc 13032} (A:)
Length = 138
Score = 32.5 bits (74), Expect = 0.044
Identities = 10/79 (12%), Positives = 16/79 (20%), Gaps = 5/79 (6%)
Query: 30 DPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCF--HWK 87
+ + V D+ T ++ K N
Sbjct: 20 SVSLGRVVVRRS-DEXDIFPVNF-IVDKGAIYIRT-AEGNKLFSXNLNHDVLFEADEVKD 76
Query: 88 SLARQLRVRGLVEKYCDLA 106
A + VR E L
Sbjct: 77 GKAWSVVVRATAEIVRKLD 95
>1xhn_A CREG, cellular repressor of E1A-stimulated genes;
beta-barrel, unknown function; HET: MSE; 1.95A {Homo
sapiens} (A:)
Length = 184
Score = 31.5 bits (71), Expect = 0.075
Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 8/66 (12%)
Query: 29 HDPHAVVLAT----ADRMGFPNARVVLIKHFDQEGF----VFYTNSQSPKGKEILENPKA 80
H LAT G P A V+ + FY + + ENP A
Sbjct: 28 HVSDWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSVSNLQENPYA 87
Query: 81 SLCFHW 86
+L
Sbjct: 88 TLTXTL 93
>3ikw_A Heparin lyase I; polysaccharide lyase, beta-jelly roll;
1.30A {Bacteroides thetaiotaomicron} PDB: 3ilr_A* 3imn_A
3in9_A* 3ina_A* (A:1-153,A:224-374)
Length = 304
Score = 27.0 bits (59), Expect = 1.7
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 143 RYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIAGKWTQFLLYP 201
+ YQ+ +I + V+ HG CP E + L + TI +W YP
Sbjct: 97 LPADVYQKAQITKTVYHHGKGACPQGSSRDYEFSVYIPSSLDSNVSTIFAQWHGMPDYP 155
>2rgw_A Aspartate carbamoyltransferase; aspartate transcarbamoylase,
pyrimidine biosynthesis, thermostability; 2.80A
{Methanococcus jannaschii} PDB: 3e2p_A (A:148-281)
Length = 134
Score = 26.0 bits (57), Expect = 3.2
Identities = 4/40 (10%), Positives = 11/40 (27%)
Query: 10 DVVFTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARV 49
DV++ Q + +E + + +
Sbjct: 73 DVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEGKKFII 112
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone
variant, chromatin, X- RAY structure, crystallography,
structural protein/DNA complex; 2.90A {Homo sapiens}
(G:)
Length = 120
Score = 26.2 bits (57), Expect = 3.5
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 69 PKGKEILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDH 109
K + + KA + F + R ++ + A +
Sbjct: 8 KKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVY 48
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine protease, proline-specific
peptidase; HET: AIO; 1.95A {Porphyromonas gingivalis
W83} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* (A:1-121)
Length = 121
Score = 25.1 bits (55), Expect = 6.7
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 1/33 (3%)
Query: 127 QSQKMPSLDDLQKSVQRYSSFYQEKEIPRPVWW 159
S L + + +FY E + W
Sbjct: 3 GSHHHHHHGSLMPGGKEFYNFYPEY-VVGLQWM 34
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.321 0.134 0.428
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,618,097
Number of extensions: 67820
Number of successful extensions: 265
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 54
Length of query: 201
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 117
Effective length of database: 2,116,429
Effective search space: 247622193
Effective search space used: 247622193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)