RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781165|ref|YP_003065578.1| pyridoxamine 5'-phosphate oxidase [Candidatus Liberibacter asiaticus str. psy62] (201 letters) >d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Length = 199 Score = 152 bits (384), Expect = 2e-38 Identities = 79/189 (41%), Positives = 110/189 (58%), Gaps = 2/189 (1%) Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGK 72 TL +W+ +A ++ DP A+V+AT D G P R+VL+KH+D++G VFYTN S K Sbjct: 13 LTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAH 72 Query: 73 EILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMP 132 +I NP+ SL F W +L RQ+ V G E+ L Y+ SRPR+S+IGAW SKQS ++ Sbjct: 73 QIENNPRVSLLFPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRIS 132 Query: 133 SLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIAG 192 + L+ +Q+ E+P P +W GFR+ IEFW +RLHDR L+ RE Sbjct: 133 ARGILESKFLELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRE--ND 190 Query: 193 KWTQFLLYP 201 W L P Sbjct: 191 AWKIDRLAP 199 >d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205 Score = 144 bits (364), Expect = 5e-36 Identities = 75/193 (38%), Positives = 108/193 (55%), Gaps = 4/193 (2%) Query: 13 FTLLSQWMQEAQSSES-HDPHAVVLATADR-MGFPNARVVLIKHFDQEGFVFYTNS-QSP 69 L ++W EA+ P A+ ++A+ G ++R++L K D GF Y+N S Sbjct: 13 IDLFTKWFNEAKEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFTIYSNWGTSR 72 Query: 70 KGKEILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQ 129 K +I NP A++ F WK L RQ+RV G+ E S+ Y+ +RPR SKIGAWAS+QS Sbjct: 73 KAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKIGAWASRQSD 132 Query: 130 KMPSLDDLQKSVQRY-SSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRE 188 + + ++L + Q+ F ++IP P +W G RI PL IEFW RP RLHDR ++ R+ Sbjct: 133 VIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRLHDRFVYRRK 192 Query: 189 TIAGKWTQFLLYP 201 T W L P Sbjct: 193 TENDPWKVVRLAP 205 >d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 Score = 143 bits (360), Expect = 1e-35 Identities = 77/203 (37%), Positives = 116/203 (57%), Gaps = 14/203 (6%) Query: 13 FTLLSQWMQEA-QSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKG 71 + W +EA Q + + +A+ LAT R G P+AR++L+K F ++GF F+TN +S KG Sbjct: 11 VKQFAAWFEEAVQCPDIGEANAMCLATCTRDGKPSARMLLLKGFGKDGFRFFTNFESRKG 70 Query: 72 KEILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKM 131 KE+ NP ASL F+W+ L RQ+RV G V+K + ++ Y+ SRP+ S+IGA S QS + Sbjct: 71 KELDSNPFASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVI 130 Query: 132 PSLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIA 191 P + L+K + YQ++E+P+P W G+ + P +EFW + RLHDR++F R Sbjct: 131 PDREYLRKKNEELEQLYQDQEVPKPKSWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPT 190 Query: 192 G-------------KWTQFLLYP 201 G W L P Sbjct: 191 GDSPLGPMTHRGEEDWLYERLAP 213 >d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Length = 204 Score = 133 bits (334), Expect = 1e-32 Identities = 60/189 (31%), Positives = 101/189 (53%), Gaps = 4/189 (2%) Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGK 72 +L W++ A+ +P A+ LAT D G P+ R+V+I + G VF T++ S KG+ Sbjct: 20 MEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGR 79 Query: 73 EILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMP 132 E+ +NP AS +W+ ++Q+ + G E+ D +D + SRP ++ + AS+QS+ + Sbjct: 80 ELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLA 139 Query: 133 SLDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIAG 192 + L+ +R + +PRP + F +C S+EFW RLH+RL + R+ G Sbjct: 140 DIHALRAEARRL--AETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRD--EG 195 Query: 193 KWTQFLLYP 201 W L P Sbjct: 196 GWKHRYLQP 204 >d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 201 Score = 132 bits (332), Expect = 2e-32 Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 8/190 (4%) Query: 13 FTLLSQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGK 72 TLL +W+ +AQ + +P+A+VLAT G P R VL K D+ G F+T+ S KG+ Sbjct: 19 LTLLRRWLNDAQRAGVSEPNAMVLATVAD-GKPVTRSVLCKILDESGVAFFTSYTSAKGE 77 Query: 73 EILENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMP 132 ++ P AS F W L RQ V+G V K Y++ RPR +++GAWAS+QS+ + Sbjct: 78 QLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVG 137 Query: 133 SLDDLQKSVQRYSSFYQEKE-IPRPVWWHGFRICPLSIEFWSERPYRLHDRLLFSRETIA 191 S L + + + +++ IP P W G+RI P +EFW R R+H+R+ + Sbjct: 138 SRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVAN---- 193 Query: 192 GKWTQFLLYP 201 L P Sbjct: 194 --GRLERLQP 201 >d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 135 Score = 83.2 bits (205), Expect = 1e-17 Identities = 29/168 (17%), Positives = 51/168 (30%), Gaps = 34/168 (20%) Query: 17 SQWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFV-FYTNSQSPKGKEIL 75 ++ M+E V LA+ ++ G+P + + + T + S K + L Sbjct: 1 TKTMKEKAVELLQKCEVVTLASVNKEGYPRPVPMSKIAAEGISTIWMSTGADSLKTIDFL 60 Query: 76 ENPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLD 135 NPKA LCF K + + G VE D Sbjct: 61 SNPKAGLCFQEKG--DSVALMGEVEVVTDEKLKQELW----------------------- 95 Query: 136 DLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRL 183 Q + + P + + +W E + +H +L Sbjct: 96 ------QDWFIEHFPGGPTDPGYV-LLKFTANHATYWIEGTF-IHKKL 135 >d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Length = 143 Score = 81.3 bits (200), Expect = 5e-17 Identities = 18/159 (11%), Positives = 40/159 (25%), Gaps = 32/159 (20%) Query: 29 HDPHAVVLATADRMGFPNAR--VVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHW 86 + + T D G ++ + F+T + S K EI + + ++ F Sbjct: 15 KNIDYGMFTTVDDDGSLHSYPMSKSGDINSEATLWFFTYAGSHKVTEIEHHEQVNVSFSS 74 Query: 87 KSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDDLQKSVQRYSS 146 R + + G + D + W Sbjct: 75 PEQQRYVSISGTSQLVKDRNKMRELWKPELQ----TW----------------------- 107 Query: 147 FYQEKEIPRPVWWHGFRICPLSIEFWSERPYRLHDRLLF 185 F + + P ++ + +W + F Sbjct: 108 FPKGLDEPD---IALLKVNINQVNYWDSTSSFKPQTISF 143 >d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Length = 141 Score = 66.3 bits (161), Expect = 2e-12 Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 32/159 (20%) Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEG-FVFYTNSQSPKGKEILE 76 +++ E+ + V++ T G+PN + ++ D F TN+ + + + + Sbjct: 4 KFLIES-NELVESSKIVMVGTNGENGYPNIKAMMRLKHDGLKKFWLSTNTSTRMVERLKK 62 Query: 77 NPKASLCFHWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPSLDD 136 N K L F + L + G +E D AS + E Sbjct: 63 NNKICLYFVDDNKFAGLMLVGTIEILHDRASKEMLWTDGCEI------------------ 104 Query: 137 LQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSER 175 Y I P + ++ Sbjct: 105 -----------YYPLGIDDPDY-TALCFTAEWGNYYRHL 131 >d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 160 Score = 59.8 bits (144), Expect = 1e-10 Identities = 26/166 (15%), Positives = 44/166 (26%), Gaps = 26/166 (15%) Query: 18 QWMQEAQSSES-HDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILE 76 M EA+ ++ + LAT G P+ + D T ++S K + Sbjct: 7 IVMSEAEIADFVNSSRTGTLATIGPDGQPHLTAMWYAVID-GEIWLETKAKSQKAVNLRR 65 Query: 77 NPKASLCF---HWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQSQKMPS 133 +P+ S R + G+ E + + H E G + + Sbjct: 66 DPRVSFLLEDGDTYDTLRGVSFEGVAEIVEEPEALHRVGVSVWERYTGPYTDE------- 118 Query: 134 LDDLQKSVQRYSSFYQEKEIPRPVWWHGFRICPLSIEFWSERPYRL 179 + G RI W R L Sbjct: 119 --------------CKPMVDQMMNKRVGVRIVARRTRSWDHRKLGL 150 >d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 142 Score = 59.1 bits (142), Expect = 2e-10 Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 1/101 (0%) Query: 29 HDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFY-TNSQSPKGKEILENPKASLCFHWK 87 VLAT G P V ++ + K + + +P+AS+ Sbjct: 10 SGNSIGVLATIKHDGRPQLSNVQYHFDPRKLLIQVSIAEPRAKTRNLRRDPRASILVDAD 69 Query: 88 SLARQLRVRGLVEKYCDLASDHYYASRPRESKIGAWASKQS 128 G + A+ + A + S Sbjct: 70 DGWSYAVAEGTAQLTPPAAAPDDDTVEALIALYRNIAGEHS 110 >d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 125 Score = 42.7 bits (100), Expect = 2e-05 Identities = 15/99 (15%), Positives = 23/99 (23%), Gaps = 8/99 (8%) Query: 30 DPHAVVLATADRMGFPNARVVLIKHF-DQEGFVFYTNSQSPKGKEILENPKASLCF---- 84 + H +L T P+ V T S K + A L Sbjct: 10 ERHLAMLTTLRADNSPHVVAVGFTFDPKTHIARVITTGGSQKAVNADRSGLAVLSQVDGA 69 Query: 85 ---HWKSLARQLRVRGLVEKYCDLASDHYYASRPRESKI 120 + A V + Y RP ++ Sbjct: 70 RWLSLEGRAAVNSDIDAVRDAELRYAQRYRTPRPNPRRV 108 >d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Length = 135 Score = 40.9 bits (95), Expect = 8e-05 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 8/68 (11%) Query: 18 QWMQEAQSSESHDPHAVVLATADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILEN 77 ++QE QS +++T G PN D + Y + + K I N Sbjct: 3 GFIQEFQS--------AIISTISEQGIPNGSYAPFVIDDAKNIYIYVSGLAVHTKNIEAN 54 Query: 78 PKASLCFH 85 P ++ F Sbjct: 55 PLVNVLFV 62 >d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238 Score = 38.2 bits (88), Expect = 5e-04 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%) Query: 29 HDPHAVVLAT--ADRMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHW 86 + VL+T GFP VV + + + + + +P+ S+ Sbjct: 13 LKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGE 72 >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 571 Score = 26.7 bits (57), Expect = 1.6 Identities = 13/54 (24%), Positives = 23/54 (42%) Query: 41 RMGFPNARVVLIKHFDQEGFVFYTNSQSPKGKEILENPKASLCFHWKSLARQLR 94 + G P +F +E V+Y S K +++ P A+ C W ++R Sbjct: 516 KTGNPAQDGEEWPNFSKEDPVYYIFSTDDKIEKLARGPLAARCSFWNDYLPKVR 569 >d1oywa1 a.4.5.43 (A:407-516) DNA helicase RecQ DNA-binding domain {Escherichia coli [TaxId: 562]} Length = 110 Score = 25.5 bits (56), Expect = 3.3 Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 85 HWKSLARQLRVRGLVEK 101 HW S+ RQL GLV + Sbjct: 62 HWVSVIRQLIHLGLVTQ 78 >d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Score = 24.9 bits (54), Expect = 4.8 Identities = 12/40 (30%), Positives = 22/40 (55%) Query: 121 GAWASKQSQKMPSLDDLQKSVQRYSSFYQEKEIPRPVWWH 160 G+W +QS +L++S QR+++FY + R + W Sbjct: 133 GSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWL 172 >d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Score = 25.0 bits (54), Expect = 4.9 Identities = 8/40 (20%), Positives = 17/40 (42%) Query: 121 GAWASKQSQKMPSLDDLQKSVQRYSSFYQEKEIPRPVWWH 160 G W + ++ ++ K + + +FY K R + W Sbjct: 129 GYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQ 168 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.321 0.134 0.428 Gapped Lambda K H 0.267 0.0516 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 786,490 Number of extensions: 34085 Number of successful extensions: 97 Number of sequences better than 10.0: 1 Number of HSP's gapped: 81 Number of HSP's successfully gapped: 19 Length of query: 201 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 120 Effective length of database: 1,295,466 Effective search space: 155455920 Effective search space used: 155455920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.9 bits)