HHsearch alignment for GI: 254781166 and conserved domain: COG1088
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].
Probab=99.09 E-value=1.6e-08 Score=75.34 Aligned_cols=217 Identities=13% Similarity=0.046 Sum_probs=134.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEE--EEEEC-C-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 78999488988417999999999889889--99848-9-88999999997138928999888999999999999999984
Q gi|254781166|r 11 KRGIVLGVANNRSLAWSIAKMCHAAGAKV--ALTWQ-G-DATKKRIEGLVEGMDFFMAGHCNVSNSETIDDVFRNLEKEW 86 (284)
Q Consensus 11 K~~iVtGa~g~~GIG~aiA~~la~~Ga~V--vi~~~-~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (284)
T Consensus 1 ~~iLVTGGaGF--IGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~-~~~~~~~~fv~~DI~D~~~v~~~~~~~---- 73 (340)
T COG1088 1 MKILVTGGAGF--IGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLAD-VEDSPRYRFVQGDICDRELVDRLFKEY---- 73 (340)
T ss_pred CCEEEECCCCH--HHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHH-HHCCCCCEEEECCCCCHHHHHHHHHHC----
T ss_conf 93799657515--77899999996099752899752331577878886-406997158854554799999999744----
Q ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCC--CCC-----------
Q ss_conf 7988999627212742125862135899985564026402322346788741012210001333--234-----------
Q gi|254781166|r 87 GTIDFLVHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMNKGGSMLTLTYL--GAD----------- 153 (284)
Q Consensus 87 G~iD~lInnag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~~~G~IInisS~--~~~----------- 153 (284)
T Consensus 74 -~~D~VvhfAAESHVD--------RSI~~P~~Fi~TNv~GT~~LLEaar~~~~~-frf~HISTDEVYG~l~~~~~~FtE~ 143 (340)
T COG1088 74 -QPDAVVHFAAESHVD--------RSIDGPAPFIQTNVVGTYTLLEAARKYWGK-FRFHHISTDEVYGDLGLDDDAFTET 143 (340)
T ss_pred -CCCEEEEECHHCCCC--------CCCCCHHHHHHCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf -887599811001332--------233570553400028799999999984666-2079941521025666788875447
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCCHHHH----HHHHH--HCCCC-------
Q ss_conf 677201244544899999999999982774237998522387269456318993899----99998--26889-------
Q gi|254781166|r 154 KVMPHYNCMGPAKAALQSAVRYLAMDLGRQSGIRVNALSAGPAKTLASSGISDFRYI----LKWNE--YNSPL------- 220 (284)
Q Consensus 154 ~~~p~~~~Y~asKaai~~ltk~lA~elg~~~gIRVN~I~PG~i~T~~~~~~~~~~~~----~~~~~--~~~pl------- 220 (284)
T Consensus 144 tp~~PsSPYSASKAasD~lVray~~TYglp----~~ItrcSNNYGPy----qfpEKlIP~~I~nal~g~~lpvYGdG~~i 215 (340)
T COG1088 144 TPYNPSSPYSASKAASDLLVRAYVRTYGLP----ATITRCSNNYGPY----QFPEKLIPLMIINALLGKPLPVYGDGLQI 215 (340)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC----EEEECCCCCCCCC----CCCHHHHHHHHHHHHCCCCCCEECCCCCE
T ss_conf 999999974044556789999999871996----6984477776887----67155667999999739998543698540
Q ss_pred CCCCCHHHHHHHHHHHHCHHHCCCCCCEEEECCCC
Q ss_conf 98766999999999860988788688689975986
Q gi|254781166|r 221 GRNITHDEVAKSALYLLSDFSSGVTGECHYVDAGY 255 (284)
Q Consensus 221 gR~g~peeiA~av~fL~Sd~s~~iTG~~i~vDGG~ 255 (284)
T Consensus 216 RDWl~VeDh~~ai~~Vl~-kg~~--GE~YNIgg~~ 247 (340)
T COG1088 216 RDWLYVEDHCRAIDLVLT-KGKI--GETYNIGGGN 247 (340)
T ss_pred EEEEEEHHHHHHHHHHHH-CCCC--CCEEEECCCC
T ss_conf 205871757889999995-6867--7668717875