HHsearch alignment for GI: 254781166 and conserved domain: PRK08277

Probab=100.00  E-value=0  Score=476.98  Aligned_cols=253  Identities=23%  Similarity=0.287  Sum_probs=223.4

Q ss_pred             CCCHH--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHCCCCEEEEECCCCCHHHHHHHH
Q ss_conf             51232--299789994889884179999999998898899984898899999999-713892899988899999999999
Q gi|254781166|r    3 VVDNL--MKDKRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGL-VEGMDFFMAGHCNVSNSETIDDVF   79 (284)
Q Consensus         3 ~~~~~--L~~K~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~-~~~~~~~~~~~~Dv~~~~~v~~~~   79 (284)
T Consensus         1 mm~~lf~L~gKvalVTGas~--GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvtd~~~v~~~~   78 (278)
T PRK08277          1 MMNNLFSLKGKVAVITGGGG--VLGGAMAKELARAGAKVAILDRNQEKAEAVVEEIKANGGEAIALKADVLDKESLEQAR   78 (278)
T ss_pred             CCCCCCCCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
T ss_conf             94006388999899958674--8999999999987998999979889999999999845990999982489999999999


Q ss_pred             HHHHHHHCCCCEEEECCCCCCCC-----------CCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHC--CCCCEEC
Q ss_conf             99999847988999627212742-----------1258621358999855640264023223467887410--1221000
Q gi|254781166|r   80 RNLEKEWGTIDFLVHAIAFSDKA-----------ELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMN--KGGSMLT  146 (284)
Q Consensus        80 ~~~~~~~G~iD~lInnag~~~~~-----------~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~--~~G~IIn  146 (284)
T Consensus        79 ~~~~~~~G~iDiLVNnAG~~~p~~~~~~~~~~~~~~~~~~~d~~~e~w~~~~~vNl~g~~~~~~~~~~~m~~~~~G~IIn  158 (278)
T PRK08277         79 QQILKDFGRCDILINGAGGNHPGATTDNEFHELPPETKTFFDLDEDGFEFVFDLNLLGTLLPTQVFAKDMIEQKGGNIIN  158 (278)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99999849988899889876766632332122454557631199999999999975999999999999998769965999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCC-----CHHHHHHHHHHCCCCC
Q ss_conf             13332346772012445448999999999999827742379985223872694563189-----9389999998268899
Q gi|254781166|r  147 LTYLGADKVMPHYNCMGPAKAALQSAVRYLAMDLGRQSGIRVNALSAGPAKTLASSGIS-----DFRYILKWNEYNSPLG  221 (284)
Q Consensus       147 isS~~~~~~~p~~~~Y~asKaai~~ltk~lA~elg~~~gIRVN~I~PG~i~T~~~~~~~-----~~~~~~~~~~~~~plg  221 (284)
T Consensus       159 isS~~~~~~~~~~~~Y~asKaav~~lTk~lA~e~a~~-gIrVNaIaPG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~Pl~  237 (278)
T PRK08277        159 ISSMNAFTPLTKVPAYSAAKAAISNFTQWLAVEFAKV-GIRVNAIAPGFFLTEQNRALLLNEDGSPTERANKILAHTPMG  237 (278)
T ss_pred             ECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCC
T ss_conf             8136647788986557999999999999999996535-949999852888772667764186678799999998479988


Q ss_pred             CCCCHHHHHHHHHHHHCH-HHCCCCCCEEEECCCCCEE
Q ss_conf             876699999999986098-8788688689975986613
Q gi|254781166|r  222 RNITHDEVAKSALYLLSD-FSSGVTGECHYVDAGYHIV  258 (284)
Q Consensus       222 R~g~peeiA~av~fL~Sd-~s~~iTG~~i~vDGG~s~~  258 (284)
T Consensus       238 R~g~pedia~~v~fLaS~~as~yiTG~~i~VDGG~tA~  275 (278)
T PRK08277        238 RFGKPEELLGTLLWLADEDASSFVTGVVLPVDGGFSAY  275 (278)
T ss_pred             CCCCHHHHHHHHHHHHCCCHHCCCCCCEEEECCCHHHH
T ss_conf             98499999999999909805277338728869254520