HHsearch alignment for GI: 254781166 and conserved domain: PRK09186

>PRK09186 flagellin modification protein A; Provisional.
Probab=100.00  E-value=0  Score=430.22  Aligned_cols=241  Identities=17%  Similarity=0.234  Sum_probs=210.0

Q ss_pred             HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHC-CCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf             2299789994889884179999999998898899984898899999999-713-89289998889999999999999999
Q gi|254781166|r    7 LMKDKRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGL-VEG-MDFFMAGHCNVSNSETIDDVFRNLEK   84 (284)
Q Consensus         7 ~L~~K~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~-~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (284)
T Consensus         1 lL~gK~~lVTGgs~--GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~   78 (255)
T PRK09186          1 MLEGKTILITGAGG--LIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQE   78 (255)
T ss_pred             CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             98959899979586--8999999999987999999969889999999999870598079998468999999999999999


Q ss_pred             HHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHC--CCCCEECCCCCCCCCC-------
Q ss_conf             8479889996272127421258621358999855640264023223467887410--1221000133323467-------
Q gi|254781166|r   85 EWGTIDFLVHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMN--KGGSMLTLTYLGADKV-------  155 (284)
Q Consensus        85 ~~G~iD~lInnag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~--~~G~IInisS~~~~~~-------  155 (284)
T Consensus        79 ~~g~id~lVnnA~~~~~-~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IVnisSi~g~~~~~~~~~~  157 (255)
T PRK09186         79 RYGKIDGAVNCAYPRNK-QYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGSLVNISSIYGVVAPKFEIYE  157 (255)
T ss_pred             HHCCCCEEEECCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCC
T ss_conf             81997789975766787-67777010999999999999839999999999998874289738995667873476421126


Q ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf             ---72012445448999999999999827742379985223872694563189938999999826889987669999999
Q gi|254781166|r  156 ---MPHYNCMGPAKAALQSAVRYLAMDLGRQSGIRVNALSAGPAKTLASSGISDFRYILKWNEYNSPLGRNITHDEVAKS  232 (284)
Q Consensus       156 ---~p~~~~Y~asKaai~~ltk~lA~elg~~~gIRVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~plgR~g~peeiA~a  232 (284)
T Consensus       158 g~~~~~~~~Y~asKaal~~ltr~lA~e~a~~-gIrVN~VaPG~i~~~~~------~~~~~~~~~~~~~~~~~~p~dia~~  230 (255)
T PRK09186        158 GTSMTSPVEYAAIKSGIIHLTKYLAKYFKDS-NIRVNCVSPGGILDNQP------EAFLNAYKKSCNGKGMLDPEDICGS  230 (255)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCC------HHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             8765446767998899999999999996758-98999985576889998------9999999863557799899999999


Q ss_pred             HHHHHCHHHCCCCCCEEEECCCCCE
Q ss_conf             9986098878868868997598661
Q gi|254781166|r  233 ALYLLSDFSSGVTGECHYVDAGYHI  257 (284)
Q Consensus       233 v~fL~Sd~s~~iTG~~i~vDGG~s~  257 (284)
T Consensus       231 v~fL~Sd~s~~iTGq~i~VDGG~sl  255 (255)
T PRK09186        231 LVFLLSDQSKYITGQNIIVDDGFSL  255 (255)
T ss_pred             HHHHHCCHHCCCCCCEEEECCCCCC
T ss_conf             9999570536801852883858066