HHsearch alignment for GI: 254781166 and conserved domain: PRK09186
>PRK09186 flagellin modification protein A; Provisional.
Probab=100.00 E-value=0 Score=430.22 Aligned_cols=241 Identities=17% Similarity=0.234 Sum_probs=210.0
Q ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-HHC-CCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 2299789994889884179999999998898899984898899999999-713-89289998889999999999999999
Q gi|254781166|r 7 LMKDKRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGL-VEG-MDFFMAGHCNVSNSETIDDVFRNLEK 84 (284)
Q Consensus 7 ~L~~K~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~-~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (284)
T Consensus 1 lL~gK~~lVTGgs~--GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~ 78 (255)
T PRK09186 1 MLEGKTILITGAGG--LIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQE 78 (255)
T ss_pred CCCCCEEEEECCCC--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 98959899979586--8999999999987999999969889999999999870598079998468999999999999999
Q ss_pred HHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHC--CCCCEECCCCCCCCCC-------
Q ss_conf 8479889996272127421258621358999855640264023223467887410--1221000133323467-------
Q gi|254781166|r 85 EWGTIDFLVHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMN--KGGSMLTLTYLGADKV------- 155 (284)
Q Consensus 85 ~~G~iD~lInnag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~--~~G~IInisS~~~~~~------- 155 (284)
T Consensus 79 ~~g~id~lVnnA~~~~~-~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IVnisSi~g~~~~~~~~~~ 157 (255)
T PRK09186 79 RYGKIDGAVNCAYPRNK-QYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGSLVNISSIYGVVAPKFEIYE 157 (255)
T ss_pred HHCCCCEEEECCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCC
T ss_conf 81997789975766787-67777010999999999999839999999999998874289738995667873476421126
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf ---72012445448999999999999827742379985223872694563189938999999826889987669999999
Q gi|254781166|r 156 ---MPHYNCMGPAKAALQSAVRYLAMDLGRQSGIRVNALSAGPAKTLASSGISDFRYILKWNEYNSPLGRNITHDEVAKS 232 (284)
Q Consensus 156 ---~p~~~~Y~asKaai~~ltk~lA~elg~~~gIRVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~plgR~g~peeiA~a 232 (284)
T Consensus 158 g~~~~~~~~Y~asKaal~~ltr~lA~e~a~~-gIrVN~VaPG~i~~~~~------~~~~~~~~~~~~~~~~~~p~dia~~ 230 (255)
T PRK09186 158 GTSMTSPVEYAAIKSGIIHLTKYLAKYFKDS-NIRVNCVSPGGILDNQP------EAFLNAYKKSCNGKGMLDPEDICGS 230 (255)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCCC------HHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 8765446767998899999999999996758-98999985576889998------9999999863557799899999999
Q ss_pred HHHHHCHHHCCCCCCEEEECCCCCE
Q ss_conf 9986098878868868997598661
Q gi|254781166|r 233 ALYLLSDFSSGVTGECHYVDAGYHI 257 (284)
Q Consensus 233 v~fL~Sd~s~~iTG~~i~vDGG~s~ 257 (284)
T Consensus 231 v~fL~Sd~s~~iTGq~i~VDGG~sl 255 (255)
T PRK09186 231 LVFLLSDQSKYITGQNIIVDDGFSL 255 (255)
T ss_pred HHHHHCCHHCCCCCCEEEECCCCCC
T ss_conf 9999570536801852883858066