HHsearch alignment for GI: 254781166 and conserved domain: TIGR00438
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=95.24 E-value=0.1 Score=31.10 Aligned_cols=115 Identities=11% Similarity=0.145 Sum_probs=74.4
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--CCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 29978999488988417999999999889889998489889999999971--3892899988899999999999999998
Q gi|254781166|r 8 MKDKRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVE--GMDFFMAGHCNVSNSETIDDVFRNLEKE 85 (284)
Q Consensus 8 L~~K~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (284)
T Consensus 31 k~G~~VlDLGAAPG-GWsQ-va~~~~G~kG~ViA~Dl~~---------~k~FP~~nv~fi~GDftdee~l~ki~~~~g~d 99 (192)
T TIGR00438 31 KPGDTVLDLGAAPG-GWSQ-VAVEQVGGKGRVIAVDLQP---------MKGFPIENVDFIRGDFTDEEVLNKILERVGDD 99 (192)
T ss_pred ECCCEEEECCCCCC-CHHH-HHHHHHCCCCEEEEEECCC---------CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 07886786578987-3877-8877606853389985455---------78856466147544767878999999857898
Q ss_pred HCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf 479889996272127421258621358999855640264023223467887410122100
Q gi|254781166|r 86 WGTIDFLVHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMNKGGSML 145 (284)
Q Consensus 86 ~G~iD~lInnag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~~~G~II 145 (284)
T Consensus 100 ekk~DVV~SDaaP~-----~SG~~~i---Dh~Rs~dL-v~~aL~ia~---~vL~~~Gnfv 147 (192)
T TIGR00438 100 EKKVDVVMSDAAPN-----ISGIWDI---DHLRSIDL-VELALDIAK---EVLKPKGNFV 147 (192)
T ss_pred CCEEEEEEECCCCC-----CCCCCCC---CHHHHHHH-HHHHHHHHH---HHHHCCCCEE
T ss_conf 74377898526888-----7898754---34437999-999999999---9861589899