HHsearch alignment for GI: 254781166 and conserved domain: TIGR01214
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=98.69 E-value=8.1e-08 Score=70.83 Aligned_cols=216 Identities=17% Similarity=0.190 Sum_probs=136.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 89994889884179999999998898899984898899999999713892899988899999999999999998479889
Q gi|254781166|r 12 RGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMDFFMAGHCNVSNSETIDDVFRNLEKEWGTIDF 91 (284)
Q Consensus 12 ~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD~ 91 (284)
T Consensus 1 rilitGa~GQ--lG~~L~~~l~~~g~~~~~~~~~-~~~~~~~---------~~~~~Dl~dP~~l~~~~r~~-----~Pd~ 63 (317)
T TIGR01214 1 RILITGANGQ--LGRELVQQLSKPGRVVVALTRS-TRLKLAA---------RWSQLDLTDPEALEELLRAI-----RPDA 63 (317)
T ss_pred CEEEECCCCH--HHHHHHHHCCCCCCEEEEECCC-CCCCHHH---------HHHHHCCCCHHHHHHHHHHH-----CCCE
T ss_conf 9788738756--7999999707888278643687-7761133---------65440622468899999852-----8753
Q ss_pred EEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEECCCCCC---C----CCCCCC------
Q ss_conf 996272127421258621358999855640264023223467887410122100013332---3----467720------
Q gi|254781166|r 92 LVHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASSLMNKGGSMLTLTYLG---A----DKVMPH------ 158 (284)
Q Consensus 92 lInnag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~~m~~~G~IInisS~~---~----~~~~p~------ 158 (284)
T Consensus 64 vvntAAYT~VD~-----AE---~~~~~AyavNa~A~~~lA~~A~~---~Ga~~vh~STDYVFDGdfGG~~~~PY~e~D~~ 132 (317)
T TIGR01214 64 VVNTAAYTDVDG-----AE---SDPEKAYAVNALAPQNLARAAAR---VGARLVHISTDYVFDGDFGGEGKRPYREDDET 132 (317)
T ss_pred EEECCHHCCCCC-----CC---CCHHHHHHHHHHHHHHHHHHHHH---CCCEEEEEEECEEECCCCCCCCCCCCCCCCCC
T ss_conf 762301101000-----03---77778765740789999999986---69159998634234475578886688764687
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHCCCCH-HHHHHHH-HHCCCCC----CCCCH---H
Q ss_conf --1244544899999999999982774237998522387269456318993-8999999-8268899----87669---9
Q gi|254781166|r 159 --YNCMGPAKAALQSAVRYLAMDLGRQSGIRVNALSAGPAKTLASSGISDF-RYILKWN-EYNSPLG----RNITH---D 227 (284)
Q Consensus 159 --~~~Y~asKaai~~ltk~lA~elg~~~gIRVN~I~PG~i~T~~~~~~~~~-~~~~~~~-~~~~plg----R~g~p---e 227 (284)
T Consensus 133 nPlnvYG~SK~~GE~a~~~~~~~e-~~lIvRTsWlY-----~~~g~~g~NF~~tMlrLaG~~~~~l~vV~DQ~GsPTy~~ 206 (317)
T TIGR01214 133 NPLNVYGQSKLAGEQAVRAAGPDE-NALIVRTSWLY-----GAGGGSGRNFVKTMLRLAGKEREELRVVDDQIGSPTYAK 206 (317)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC-CEEEEEEEEEE-----CCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHH
T ss_conf 984312111568999999837998-57889852134-----489988421799999853789984037855768735899
Q ss_pred HHHHHHHHHHCHHHCCCCCCEEEECCCCCEECCCC
Q ss_conf 99999998609887886886899759866130587
Q gi|254781166|r 228 EVAKSALYLLSDFSSGVTGECHYVDAGYHIVGMKA 262 (284)
Q Consensus 228 eiA~av~fL~Sd~s~~iTG~~i~vDGG~s~~g~~~ 262 (284)
T Consensus 207 dLA~~~~~ll~-~~~Wdv~~~a~~~GvYH~~~~G~ 240 (317)
T TIGR01214 207 DLARAIAALLE-RLNWDVEDAARARGVYHLANSGQ 240 (317)
T ss_pred HHHHHHHHHHH-HHCCCHHCCCCCCCEEEEEECCC
T ss_conf 99999999997-61334001013673467750543