HHsearch alignment for GI: 254781166 and conserved domain: TIGR01472
>TIGR01472 gmd GDP-mannose 4,6-dehydratase; InterPro: IPR006368 This family represent GDP-mannose 4,6-dehydratase, also known as GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of Escherichia coli. Excluded from this family are members of the clade that are poorly related because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase .; GO: 0008446 GDP-mannose 46-dehydratase activity, 0019673 GDP-mannose metabolic process, 0005622 intracellular.
Probab=97.10 E-value=0.0042 Score=40.07 Aligned_cols=178 Identities=14% Similarity=0.040 Sum_probs=117.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHH-CCC-C--EEEEECCCCCHHHHHHHHHH
Q ss_conf 789994889884179999999998898899984898-----89999999971-389-2--89998889999999999999
Q gi|254781166|r 11 KRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGD-----ATKKRIEGLVE-GMD-F--FMAGHCNVSNSETIDDVFRN 81 (284)
Q Consensus 11 K~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~-----~~~~~~~~~~~-~~~-~--~~~~~~Dv~~~~~v~~~~~~ 81 (284)
T Consensus 1 k~ALiTGiTGQ--DGSYLAE~LL~~GYeVHG~~RRSSSfNT~Ri~hiY~~~h~~~~r~A~~fLHYGDlTDs~~L~~~i~~ 78 (365)
T TIGR01472 1 KVALITGITGQ--DGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHKEEKRRALMFLHYGDLTDSSNLVKLIDE 78 (365)
T ss_pred CEEEEECCCCC--CHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 93688345557--6789999987269687645862554252245676405354101661354204421068999999740
Q ss_pred HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH--HHCCCCCEECC---CC-CCCC--
Q ss_conf 9998479889996272127421258621358999855640264023223467887--41012210001---33-3234--
Q gi|254781166|r 82 LEKEWGTIDFLVHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASS--LMNKGGSMLTL---TY-LGAD-- 153 (284)
Q Consensus 82 ~~~~~G~iD~lInnag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~--~m~~~G~IIni---sS-~~~~-- 153 (284)
T Consensus 79 ~k-----P~EiYNLAAQSH--------V~VSFe~PeYTa~~~g~GTLrlLEA~r~hni~gl~~~~rFYQAStSElYG~v~ 145 (365)
T TIGR01472 79 IK-----PTEIYNLAAQSH--------VKVSFEIPEYTADVDGIGTLRLLEAVRSHNILGLIKEIRFYQASTSELYGEVQ 145 (365)
T ss_pred CC-----CCEEECCCCCCC--------EEEECCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCC
T ss_conf 48-----863420202371--------03541652000012443177899987423341412030255245231136555
Q ss_pred -------CCCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCEEEEEECCCCCCCHHHHCC
Q ss_conf -------67720124454489999999999998---2774237998522387269456318
Q gi|254781166|r 154 -------KVMPHYNCMGPAKAALQSAVRYLAMD---LGRQSGIRVNALSAGPAKTLASSGI 204 (284)
Q Consensus 154 -------~~~p~~~~Y~asKaai~~ltk~lA~e---lg~~~gIRVN~I~PG~i~T~~~~~~ 204 (284)
T Consensus 146 ~~PQ~E~TPF~PRSPYAaAK~yA~w~tvNYREAYgL~A~-nGILFNHESP~RGetFVTRKI 205 (365)
T TIGR01472 146 EIPQNETTPFYPRSPYAAAKLYAYWITVNYREAYGLFAV-NGILFNHESPRRGETFVTRKI 205 (365)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCHH-CCEEECCCCCCCCCCCCHHHH
T ss_conf 788888887688876899988454310212100341000-352104678877885322589