HHsearch alignment for GI: 254781166 and conserved domain: TIGR01472

>TIGR01472 gmd GDP-mannose 4,6-dehydratase; InterPro: IPR006368 This family represent GDP-mannose 4,6-dehydratase, also known as GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of Escherichia coli. Excluded from this family are members of the clade that are poorly related because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase .; GO: 0008446 GDP-mannose 46-dehydratase activity, 0019673 GDP-mannose metabolic process, 0005622 intracellular.
Probab=97.10  E-value=0.0042  Score=40.07  Aligned_cols=178  Identities=14%  Similarity=0.040  Sum_probs=117.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHHHH-CCC-C--EEEEECCCCCHHHHHHHHHH
Q ss_conf             789994889884179999999998898899984898-----89999999971-389-2--89998889999999999999
Q gi|254781166|r   11 KRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGD-----ATKKRIEGLVE-GMD-F--FMAGHCNVSNSETIDDVFRN   81 (284)
Q Consensus        11 K~~iVtGa~g~~GIG~aiA~~la~~Ga~Vvi~~~~~-----~~~~~~~~~~~-~~~-~--~~~~~~Dv~~~~~v~~~~~~   81 (284)
T Consensus         1 k~ALiTGiTGQ--DGSYLAE~LL~~GYeVHG~~RRSSSfNT~Ri~hiY~~~h~~~~r~A~~fLHYGDlTDs~~L~~~i~~   78 (365)
T TIGR01472         1 KVALITGITGQ--DGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHKEEKRRALMFLHYGDLTDSSNLVKLIDE   78 (365)
T ss_pred             CEEEEECCCCC--CHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             93688345557--6789999987269687645862554252245676405354101661354204421068999999740


Q ss_pred             HHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHH--HHCCCCCEECC---CC-CCCC--
Q ss_conf             9998479889996272127421258621358999855640264023223467887--41012210001---33-3234--
Q gi|254781166|r   82 LEKEWGTIDFLVHAIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTALAARASS--LMNKGGSMLTL---TY-LGAD--  153 (284)
Q Consensus        82 ~~~~~G~iD~lInnag~~~~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~k~~~~--~m~~~G~IIni---sS-~~~~--  153 (284)
T Consensus        79 ~k-----P~EiYNLAAQSH--------V~VSFe~PeYTa~~~g~GTLrlLEA~r~hni~gl~~~~rFYQAStSElYG~v~  145 (365)
T TIGR01472        79 IK-----PTEIYNLAAQSH--------VKVSFEIPEYTADVDGIGTLRLLEAVRSHNILGLIKEIRFYQASTSELYGEVQ  145 (365)
T ss_pred             CC-----CCEEECCCCCCC--------EEEECCCCCCHHCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCCC
T ss_conf             48-----863420202371--------03541652000012443177899987423341412030255245231136555


Q ss_pred             -------CCCCCHHHHHHHHHHHHHHHHHHHHH---HCCCCCEEEEEECCCCCCCHHHHCC
Q ss_conf             -------67720124454489999999999998---2774237998522387269456318
Q gi|254781166|r  154 -------KVMPHYNCMGPAKAALQSAVRYLAMD---LGRQSGIRVNALSAGPAKTLASSGI  204 (284)
Q Consensus       154 -------~~~p~~~~Y~asKaai~~ltk~lA~e---lg~~~gIRVN~I~PG~i~T~~~~~~  204 (284)
T Consensus       146 ~~PQ~E~TPF~PRSPYAaAK~yA~w~tvNYREAYgL~A~-nGILFNHESP~RGetFVTRKI  205 (365)
T TIGR01472       146 EIPQNETTPFYPRSPYAAAKLYAYWITVNYREAYGLFAV-NGILFNHESPRRGETFVTRKI  205 (365)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCHH-CCEEECCCCCCCCCCCCHHHH
T ss_conf             788888887688876899988454310212100341000-352104678877885322589