HHsearch alignment for GI: 254781166 and conserved domain: pfam12241

>pfam12241 Enoyl_reductase Trans-2-enoyl-CoA reductase catalytic region. This family of trans-2-enoyl-CoA reductases, EC:1.3.1.44, carries the the catalytic sites of the enzyme, characterized by the conserved sequence motifs: YNThhhFxK, and YShAPxR. In Euglena where the enzyme has been characterized it catalyses the reduction of enoyl-CoA to acyl-CoA in an unusual fatty acid pathway in mitochondria. the whole path performs a malonyl-CoA independent synthesis of fatty acids leading to accumulation of wax esters, which serve as the sink for electrons stemming from glycolytic ATP synthesis and pyruvate oxidation.
Probab=90.18  E-value=1.5  Score=23.44  Aligned_cols=149  Identities=20%  Similarity=0.275  Sum_probs=94.0

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCC------------CCCC---------------
Q ss_conf             89289998889999999999999999847988999627212742-1258------------6213---------------
Q gi|254781166|r   59 MDFFMAGHCNVSNSETIDDVFRNLEKEWGTIDFLVHAIAFSDKA-ELTG------------PYIN---------------  110 (284)
Q Consensus        59 ~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD~lInnag~~~~~-~~~~------------~~~~---------------  110 (284)
T Consensus        22 Gl~Ak~~ngDAFS~e~K~~vI~~Ik~~~G~vDLvVYSLAsprR~~P~tG~~~~S~LKpig~~~t~ktld~~~~~v~~~ti  101 (237)
T pfam12241        22 GLYAKSINGDAFSDEIKQQVIELIKEDFGQVDLVVYSLAAPRRTDPETGEVYRSVLKPIGETFTGKTLDTEKDEIVEVTV  101 (237)
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCEECCCCCEEEEEEE
T ss_conf             98346425523878999999999999649713899961366677899987886654137875215603058871899863


Q ss_pred             --CCHHHHHHHHCCCCCHHH-HHHHHHH--HHHCCCCCEECCCCCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             --589998556402640232-2346788--741012210001333234677201--244544899999999999982774
Q gi|254781166|r  111 --TTRENFLNTMDVSVYSFT-ALAARAS--SLMNKGGSMLTLTYLGADKVMPHY--NCMGPAKAALQSAVRYLAMDLGRQ  183 (284)
Q Consensus       111 --~~~e~~~~~~~vnl~~~~-~~~k~~~--~~m~~~G~IInisS~~~~~~~p~~--~~Y~asKaai~~ltk~lA~elg~~  183 (284)
T Consensus       102 epAt~eEI~~TvkVMGGEDWe~Wi~aL~~AgvLA~g~~TvAysYIG~~~T~pIY~~GTiG~AK~dL~~ta~~i~~~L~~~  181 (237)
T pfam12241       102 EPATEEEIAATVKVMGGEDWELWIDALSEAGVLAEGAKTVAYSYIGPELTWPIYRDGTIGRAKKDLERTAHALNEKLAAL  181 (237)
T ss_pred             CCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             68998999866015186079999999987876447966998860387666123427737789999999999999998754


Q ss_pred             CCEEEEEECCCCCCCHHHHCCCCHH
Q ss_conf             2379985223872694563189938
Q gi|254781166|r  184 SGIRVNALSAGPAKTLASSGISDFR  208 (284)
Q Consensus       184 ~gIRVN~I~PG~i~T~~~~~~~~~~  208 (284)
T Consensus       182 ~G~A~vsV~kAlV-TqASsaIP~~p  205 (237)
T pfam12241       182 GGRAYVSVNKALV-TQASSAIPVMP  205 (237)
T ss_pred             CCEEEEEEEHHHH-CCHHCCCCCHH
T ss_conf             9807999732320-00100277678