BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781166|ref|YP_003065579.1| enoyl-(acyl carrier protein)
reductase [Candidatus Liberibacter asiaticus str. psy62]
(284 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781166|ref|YP_003065579.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 284
Score = 588 bits (1517), Expect = e-170, Method: Compositional matrix adjust.
Identities = 284/284 (100%), Positives = 284/284 (100%)
Query: 1 MLVVDNLMKDKRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMD 60
MLVVDNLMKDKRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMD
Sbjct: 1 MLVVDNLMKDKRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMD 60
Query: 61 FFMAGHCNVSNSETIDDVFRNLEKEWGTIDFLVHAIAFSDKAELTGPYINTTRENFLNTM 120
FFMAGHCNVSNSETIDDVFRNLEKEWGTIDFLVHAIAFSDKAELTGPYINTTRENFLNTM
Sbjct: 61 FFMAGHCNVSNSETIDDVFRNLEKEWGTIDFLVHAIAFSDKAELTGPYINTTRENFLNTM 120
Query: 121 DVSVYSFTALAARASSLMNKGGSMLTLTYLGADKVMPHYNCMGPAKAALQSAVRYLAMDL 180
DVSVYSFTALAARASSLMNKGGSMLTLTYLGADKVMPHYNCMGPAKAALQSAVRYLAMDL
Sbjct: 121 DVSVYSFTALAARASSLMNKGGSMLTLTYLGADKVMPHYNCMGPAKAALQSAVRYLAMDL 180
Query: 181 GRQSGIRVNALSAGPAKTLASSGISDFRYILKWNEYNSPLGRNITHDEVAKSALYLLSDF 240
GRQSGIRVNALSAGPAKTLASSGISDFRYILKWNEYNSPLGRNITHDEVAKSALYLLSDF
Sbjct: 181 GRQSGIRVNALSAGPAKTLASSGISDFRYILKWNEYNSPLGRNITHDEVAKSALYLLSDF 240
Query: 241 SSGVTGECHYVDAGYHIVGMKAEDAPDISVVKEKDPASLSSSVK 284
SSGVTGECHYVDAGYHIVGMKAEDAPDISVVKEKDPASLSSSVK
Sbjct: 241 SSGVTGECHYVDAGYHIVGMKAEDAPDISVVKEKDPASLSSSVK 284
>gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 267
Score = 278 bits (711), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 131/257 (50%), Positives = 191/257 (74%), Gaps = 1/257 (0%)
Query: 6 NLMKDKRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMDFFMAG 65
N++K KRG+++GVAN+ S+AW IAK+ H+AGA++A ++QG++ KR++ L +D
Sbjct: 3 NILKGKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMI 62
Query: 66 HCNVSNSETIDDVFRNLEKEWGTIDFLVHAIAFSDKAELTGPYINTTRENFLNTMDVSVY 125
CNV + ++D +F +++ W T+DF+VH+IAFSDK EL GPY NT+R+NF+ TM VS +
Sbjct: 63 PCNVEDPSSMDLLFERIKERWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCF 122
Query: 126 SFTALAARASSLMNKGGSMLTLTYLGADKVMPHYNCMGPAKAALQSAVRYLAMDLGRQSG 185
SFT + RA+ LM GG+M+TLTY G+ +V+P+YN M PAK+AL+S+ +YLA D G +
Sbjct: 123 SFTEIVRRAAQLMPHGGAMITLTYGGSMRVVPNYNAMAPAKSALESSTKYLACDYGGMN- 181
Query: 186 IRVNALSAGPAKTLASSGISDFRYILKWNEYNSPLGRNITHDEVAKSALYLLSDFSSGVT 245
IR+NA+SAGP +TLA + IS+ R I W++ NSPL R ++ +++ SALYLLS S+GVT
Sbjct: 182 IRINAISAGPVRTLAGASISNGRDIAAWSKENSPLKRTVSLEDIGNSALYLLSYLSNGVT 241
Query: 246 GECHYVDAGYHIVGMKA 262
GE HYVD GY+IV M +
Sbjct: 242 GEIHYVDCGYNIVAMPS 258
>gi|254780535|ref|YP_003064948.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 247
Score = 46.2 bits (108), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 122/254 (48%), Gaps = 19/254 (7%)
Query: 11 KRGIVLGVANNRSLAWSIAKMCHAAGAKVALTWQGDATKKRIEGLVEGMDFFMAGHCNVS 70
K+ +V G + S+ +IAK+ + GA V L +++ + +D F+ N S
Sbjct: 7 KKALVTGASG--SIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFS 64
Query: 71 NSETIDDVFRNLEKEWGTIDFLVH-AIAFSDKAELTGPYINTTRENFLNTMDVSVYSFTA 129
+ +++ + + + +E G +D LV+ A D + Y E++ + + V++ S
Sbjct: 65 DRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARY-----EDWDDVLSVNLTSAFL 119
Query: 130 LAARASSLM--NKGGSMLTLT-YLGADKVMPHYN-CMGPAKAALQSAVRYLAMDLGRQSG 185
L + LM N+ G ++ +T +G N C AK+ L + LA + GR++
Sbjct: 120 LTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYC--AAKSGLTGFTKALAQETGRRN- 176
Query: 186 IRVNALSAGPAKTLASSGISDFRYILKWNEYNS-PLGRNITHDEVAKSALYLLSDFSSGV 244
+ VN ++ G + + +++ + K +S P+ R D++A + LYL S +S V
Sbjct: 177 VTVNCVAPGFIGSDMTVNLTEDQ---KGKIISSIPMKRMGAVDDIAAAVLYLSSLEASYV 233
Query: 245 TGECHYVDAGYHIV 258
TG+ +V+ G ++
Sbjct: 234 TGQTIHVNGGMAMI 247
>gi|254780938|ref|YP_003065351.1| 4'-phosphopantetheinyl transferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 132
Score = 23.9 bits (50), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 16 LGVANNRSLAWSIAKMCHAAGAKVALTWQGDAT 48
+G ++ ++W ++CH G K ++ G A+
Sbjct: 63 IGTGISKGVSWKDIEVCHFPGGKPYISISGRAS 95
>gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 461
Score = 23.9 bits (50), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 73 ETIDDVFRNLEKEWGTIDFLVH 94
E IDD+++ EK+ ID L+H
Sbjct: 193 EIIDDIWKFSEKQGLEIDTLIH 214
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.317 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,753
Number of Sequences: 1233
Number of extensions: 6402
Number of successful extensions: 17
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 5
length of query: 284
length of database: 328,796
effective HSP length: 73
effective length of query: 211
effective length of database: 238,787
effective search space: 50384057
effective search space used: 50384057
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)