HHsearch alignment for GI: 254781167 and conserved domain: COG0329
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].
Probab=91.94 E-value=1 Score=25.03 Aligned_cols=191 Identities=21% Similarity=0.228 Sum_probs=107.5
Q ss_pred HHHHHHHHHH---CCCEEEECCCCC-CHHHHCCCHHHHHH----CCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7899999982---898299817033-24776089789830----274578469998269989999988753104537774
Q gi|254781167|r 7 RHYRFFARLL---TNNALLYTEMIV-ADAILRGDKKNILG----FSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEIN 78 (322)
Q Consensus 7 ~~fR~l~r~~---~~~~~~~TEmi~-a~~l~~~~~~~~~~----~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~id 78 (322)
T Consensus 25 ~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il 104 (299)
T COG0329 25 EALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGIL 104 (299)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999999849988997986657221699999999999999968977789862877799999999999970999999
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE---ECCCCCCCCCCCHHHHHHHHCCCCCCH-HHHH
Q ss_conf 425641367766688999985589999999998502790699986---113456653220145543200012201-2100
Q gi|254781167|r 79 LNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKC---RIGVDDQIPAVALRNLVKSIKKSGVNG-IWIH 154 (322)
Q Consensus 79 lN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~---RlG~~~~~~~~~~~~~~~~~~~~g~~~-itiH 154 (322)
T Consensus 105 ~v--~P--yY~k--------~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l------~~e~i~~la~--~~nivgi- 163 (299)
T COG0329 105 VV--PP--YYNK--------PSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDL------SPETIARLAE--HPNIVGV- 163 (299)
T ss_pred EE--CC--CCCC--------CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC------CHHHHHHHHC--CCCEEEE-
T ss_conf 84--89--7889--------8979999999999985189989997875248999------9999999827--8988999-
Q ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCCCCCCHHHHHH-HHHCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 1356640257742122766104678766673887-53025777789989888-742035234412200012439999998
Q gi|254781167|r 155 ARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPD-LFIGLNGGLEDMSQALK-ILPSVDGVMIGRAAYKNSAMLTTVDEY 232 (322)
Q Consensus 155 ~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~-~~i~~NGdi~~~~~a~~-~l~~~dgvMigRga~~~P~if~~I~~~ 232 (322)
T Consensus 164 -----------Kd--~~g--d~~~~~~~~~~~~~~~f~v~~G~d---~~~~~~~~~G~~G~is~~~-N~~p~~~~~l~~~ 224 (299)
T COG0329 164 -----------KD--SSG--DLDRLEEIIAALGDRDFIVLSGDD---ELALPALLLGADGVISVTA-NVAPELAVELYRA 224 (299)
T ss_pred -----------EE--CCC--CHHHHHHHHHHCCCCCEEEEECCH---HHHHHHHHCCCCEEEECCC-HHCHHHHHHHHHH
T ss_conf -----------84--788--999999999864876628982665---8888998677985884100-1279999999999
Q ss_pred HCCCC
Q ss_conf 71998
Q gi|254781167|r 233 FSNPL 237 (322)
Q Consensus 233 l~~~~ 237 (322)
T Consensus 225 ~~~g~ 229 (299)
T COG0329 225 AKAGD 229 (299)
T ss_pred HHCCC
T ss_conf 98789