HHsearch alignment for GI: 254781167 and conserved domain: COG1902
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion].
Probab=98.77 E-value=5.7e-08 Score=78.55 Aligned_cols=224 Identities=19% Similarity=0.253 Sum_probs=143.5
Q ss_pred CCCHHHHHHH-HHHCCCEEEECCCCCC--HHHHC-------CCH-----HHHH-HCCCCCCCEEEEEECC----------
Q ss_conf 8607899999-9828982998170332--47760-------897-----8983-0274578469998269----------
Q gi|254781167|r 4 WTDRHYRFFA-RLLTNNALLYTEMIVA--DAILR-------GDK-----KNIL-GFSTQEKPLALQIGGA---------- 57 (322)
Q Consensus 4 ~Td~~fR~l~-r~~~~~~~~~TEmi~a--~~l~~-------~~~-----~~~~-~~~~~e~p~~~Ql~g~---------- 57 (322)
T Consensus 37 pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~ 116 (363)
T COG1902 37 PTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPW 116 (363)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf 88899999999864897779996674075546589986657866738899999999856995999822776133223567
Q ss_pred ------------------CH------------HHHHHHHHHHHCCCCCEEEECC---------CCCHHHHHHHHHHHHHH
Q ss_conf ------------------98------------9999988753104537774425---------64136776668899998
Q gi|254781167|r 58 ------------------DI------------SKLVEAAKIVEDFGYNEINLNV---------GCPSARVHEGSFGACLM 98 (322)
Q Consensus 58 ------------------~p------------~~~~~aa~~~~~~g~~~idlN~---------GCP~~~v~~~g~GaaLl 98 (322)
T Consensus 117 ~~~~vapS~~~~~~~~~~~pr~mt~eeI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlE 196 (363)
T COG1902 117 LPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLE 196 (363)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 87645777442566788888658999999999999999999998399989984044449998558755777776688589
Q ss_pred HHHHHHHHHHHHHHCCCCE--EEEEEEECC-C-CC-CCCCCCHHHHHHHHCCCC-CCHHHHH-HHHHHHHCCCCCCCCCC
Q ss_conf 5589999999998502790--699986113-4-56-653220145543200012-2012100-13566402577421227
Q gi|254781167|r 99 LNPDIVGDCIAAMCKALSI--PVTVKCRIG-V-DD-QIPAVALRNLVKSIKKSG-VNGIWIH-ARKAILKGLSPKDNRKI 171 (322)
Q Consensus 99 ~~p~~~~~iv~~~~~~~~~--pvsvK~RlG-~-~~-~~~~~~~~~~~~~~~~~g-~~~itiH-~Rt~~~~g~s~~~~~~~ 171 (322)
T Consensus 197 NR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~------~~~~~~~~ 270 (363)
T COG1902 197 NRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGY------ERGGTITV 270 (363)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC------CCCCCCCC
T ss_conf 998899999999999729886699997745467788888999999999998558844799603644------57887444
Q ss_pred C-C-CHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-C-CCCEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 6-6-10467876667388753025777789989888742-0-3523441220001243999999871
Q gi|254781167|r 172 P-N-LDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-S-VDGVMIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 172 ~-~-~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~-~dgvMigRga~~~P~if~~I~~~l~ 234 (322)
T Consensus 271 ~~~~~~~~~a~~i~~~~-~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~v~k~~~g~~ 336 (363)
T COG1902 271 SGPGYQVEFAARIKKAV-RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEGRE 336 (363)
T ss_pred CCCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCCEEEECHHHHCCCCHHHHHHCCCC
T ss_conf 66412478999998860-7877986897999999999982998888726366509208999973787