HHsearch alignment for GI: 254781167 and conserved domain: PRK05437
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional.
Probab=97.85 E-value=0.00021 Score=52.20 Aligned_cols=157 Identities=24% Similarity=0.263 Sum_probs=92.0
Q ss_pred CCCEEEEE-----ECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 78469998-----2699899999887531045377744256413677666889999855899999999985027906999
Q gi|254781167|r 47 EKPLALQI-----GGADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTV 121 (322)
Q Consensus 47 e~p~~~Ql-----~g~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsv 121 (322)
T Consensus 120 ~~~l~aNiGa~~~~~~~~~~~~~av~~i~Ad-Al~iHlN~~--QEl~qpEGD-----r~f~~~l~~I~~i~~~~~vPVIv 191 (351)
T PRK05437 120 DGLLFANIGAVQLYGYGVEEAQRAVEMIEAD-ALQIHLNPL--QELVQPEGD-----RDFRGWLDRIAEIVSALPVPVIV 191 (351)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CEEEECCCH--HHHCCCCCC-----CCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 8738861272101435899999999971678-157524624--540288889-----77889999999999867998898
Q ss_pred EEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH--HHHHHCCCCCC-CCCCCC--CHH-----HHHHHHHHHCCCCCC
Q ss_conf 86113456653220145543200012201210013--56640257742-122766--104-----678766673887530
Q gi|254781167|r 122 KCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHAR--KAILKGLSPKD-NRKIPN--LDY-----DIVYEIKKENPDLFI 191 (322)
Q Consensus 122 K~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~R--t~~~~g~s~~~-~~~~~~--~~~-----~~i~~l~~~~~~~~i 191 (322)
T Consensus 192 Ke-VG~G--is----~e~a~~l~~~Gv~~IdVsg~GGTnf~~IE~~R~~~~~~~~~~~~wGipT~~sL~e~~~~~~~~~i 264 (351)
T PRK05437 192 KE-VGFG--IS----KETAKRLADAGVKAIDVAGAGGTSWAAVENYRAKQRRLASYFADWGIPTAQSLLEARSALPDLPI 264 (351)
T ss_pred EE-CCCC--CC----HHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCEE
T ss_conf 52-1578--89----99999999679999995799885579999887102124577773486689999999974799829
Q ss_pred CCCCCCCCHHHHHHHHH-CCCCEEEECC
Q ss_conf 25777789989888742-0352344122
Q gi|254781167|r 192 GLNGGLEDMSQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 192 ~~NGdi~~~~~a~~~l~-~~dgvMigRg 218 (322)
T Consensus 265 iasGGIR~glDi~KaLaLGA~~vgia~p 292 (351)
T PRK05437 265 IASGGIRTGLDIAKALALGADAVGLAGP 292 (351)
T ss_pred EEECCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 9627878789999999955107775899