HHsearch alignment for GI: 254781167 and conserved domain: PRK11815

>PRK11815 tRNA-dihydrouridine synthase A; Provisional.
Probab=100.00  E-value=0  Score=679.89  Aligned_cols=312  Identities=51%  Similarity=0.881  Sum_probs=296.1

Q ss_pred             CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHCCCHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf             97786078999999828982998170332477608978983027457846999826998999998875310453777442
Q gi|254781167|r    1 MVDWTDRHYRFFARLLTNNALLYTEMIVADAILRGDKKNILGFSTQEKPLALQIGGADISKLVEAAKIVEDFGYNEINLN   80 (322)
Q Consensus         1 Mag~Td~~fR~l~r~~~~~~~~~TEmi~a~~l~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~~~idlN   80 (322)
T Consensus        18 M~gvTD~~fR~l~R~~~~~~l~yTEMvsa~al~~~~~~~~l~~~~~E~Pv~vQl~G~dp~~la~Aa~i~~~~g~d~IDlN   97 (333)
T PRK11815         18 MMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLN   97 (333)
T ss_pred             CCCCCCHHHHHHHHHHCCCCEEEECCEEEHHHHCCCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEECCC
T ss_conf             79980799999999977997798699851466617988885069877987999747999999999999987398853523


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf             56413677666889999855899999999985027906999861134566532201455432000122012100135664
Q gi|254781167|r   81 VGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIHARKAIL  160 (322)
Q Consensus        81 ~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH~Rt~~~  160 (322)
T Consensus        98 ~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVTvK~RlG~d~~d~~~~l~~f~~~~~~aG~~~i~vH~R~a~l  177 (333)
T PRK11815         98 VGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDRFIVHARKAWL  177 (333)
T ss_pred             CCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHHHHH
T ss_conf             89986887327801787079999999999998734885357863167777528999999999997599889996027877


Q ss_pred             HCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             02577421227661046787666738875302577778998988874203523441220001243999999871998888
Q gi|254781167|r  161 KGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAAYKNSAMLTTVDEYFSNPLTGS  240 (322)
Q Consensus       161 ~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga~~~P~if~~I~~~l~~~~~~~  240 (322)
T Consensus       178 ~Glspk~nR~ippl~~~~v~~lk~~~p~ipvi~NGdI~s~~~~~~~l~~~DGVMiGRga~~nPwif~~id~~~~g~~~-~  256 (333)
T PRK11815        178 KGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMIGRAAYHNPYLLAEVDRELFGEPA-P  256 (333)
T ss_pred             CCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEHHHHHCCCHHHHHHHHHHHCCCC-C
T ss_conf             267877750587304899999997667871884599699999999985599621148675599789999999848999-9


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf             99988999999999999999999998522876799899899987389998999999986217811069999999998652
Q gi|254781167|r  241 SPIKTRVDKDFWRKISASMTDYAARHLHSGGKLQQITRHMIGLFHGFPNSRRCRHILTVEAGASTATHHIIETAFNLMIE  320 (322)
Q Consensus       241 ~p~~~~~~~~~~~~i~~~~~~y~~~~~~~~~~i~~irKhl~~y~kGlpgak~~R~~Ls~~~~~~~~~~~iie~~~~~l~E  320 (322)
T Consensus       257 ~~s~--------~ei~~~~~~y~~~~~~~g~~~~~~~rHl~~~~~G~pGak~~R~~Lse~~~~~~~~~~~l~~a~~~~~~  328 (333)
T PRK11815        257 VPSR--------EEVLEAMLPYIEAHLAQGGRLNHITRHMLGLFQGLPGARRWRRYLSENAHKPGAGIEVLEEALALVEE  328 (333)
T ss_pred             CCCH--------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             9999--------99999999999999984998899999999986499878999999714176899969999999986457


Q ss_pred             C
Q ss_conf             1
Q gi|254781167|r  321 S  321 (322)
Q Consensus       321 ~  321 (322)
T Consensus       329 ~  329 (333)
T PRK11815        329 A  329 (333)
T ss_pred             H
T ss_conf             4