HHsearch alignment for GI: 254781167 and conserved domain: PRK13111
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional.
Probab=97.12 E-value=0.013 Score=39.15 Aligned_cols=166 Identities=20% Similarity=0.240 Sum_probs=91.5
Q ss_pred CEEEEEECCCH--HHHHHHHHHHHCCCCCEEEECC--CCCH--HHHHHHHHHHHHH--HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 46999826998--9999988753104537774425--6413--6776668899998--5589999999998502790699
Q gi|254781167|r 49 PLALQIGGADI--SKLVEAAKIVEDFGYNEINLNV--GCPS--ARVHEGSFGACLM--LNPDIVGDCIAAMCKALSIPVT 120 (322)
Q Consensus 49 p~~~Ql~g~~p--~~~~~aa~~~~~~g~~~idlN~--GCP~--~~v~~~g~GaaLl--~~p~~~~~iv~~~~~~~~~pvs 120 (322)
T Consensus 10 ali~y~taG~P~~e~~~~~~~~l~~~Gad~iEiGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~f~~~~~~r~~~~~piv 89 (256)
T PRK13111 10 ALIPYITAGDPDLETSLEILKALVEAGADIIELGIPFSDPVADGPVIQRASLRALAAGVTLADVLELLREIRAKPTIPIV 89 (256)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 68988707089989999999999965999999788878876657999999999997799699999999998606899889
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHH-------------------------------HHHHH----------
Q ss_conf 9861134566532201455432000122012100-------------------------------13566----------
Q gi|254781167|r 121 VKCRIGVDDQIPAVALRNLVKSIKKSGVNGIWIH-------------------------------ARKAI---------- 159 (322)
Q Consensus 121 vK~RlG~~~~~~~~~~~~~~~~~~~~g~~~itiH-------------------------------~Rt~~---------- 159 (322)
T Consensus 90 lM~---Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~gfiY 166 (256)
T PRK13111 90 LMT---YYNPIFQYGVEAFAADAAEAGVDGLIIPDLPPEEAEEFRAAAKKHGIDLIFLVAPTTTDERLKKIASHASGFVY 166 (256)
T ss_pred EEE---ECCHHHHHCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEE
T ss_conf 985---03089870999999999975997798169997888999999997598089996999988999999962698599
Q ss_pred ---HHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf ---402577421227661046787666738875302577778998988874203523441220
Q gi|254781167|r 160 ---LKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILPSVDGVMIGRAA 219 (322)
Q Consensus 160 ---~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~~~dgvMigRga 219 (322)
T Consensus 167 ~vs~~GvTG~~~-~~~~~~~~~i~~ik~~-t~~Pi~vGFGIs~~e~v~~~~~~aDGvIVGSai 227 (256)
T PRK13111 167 YVSRAGVTGARS-ADAADVADLLARLKAH-TDLPVAVGFGISTPEQAAAIAEGADGVIVGSAL 227 (256)
T ss_pred EEECCCCCCCCC-CCHHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHCCCCEEEECHHH
T ss_conf 985677678876-6628899999999870-689758852889999999997459999986899