HHsearch alignment for GI: 254781167 and conserved domain: TIGR00007
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=97.05 E-value=0.0014 Score=46.20 Aligned_cols=91 Identities=21% Similarity=0.335 Sum_probs=73.3
Q ss_pred CCHHHHHHHHCC-CCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCC
Q ss_conf 201455432000-122012100135664025774212276610467876667388753025777789989888742-035
Q gi|254781167|r 134 VALRNLVKSIKK-SGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVD 211 (322)
Q Consensus 134 ~~~~~~~~~~~~-~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~d 211 (322)
T Consensus 28 d~P~~~A~~~~~~~GA~~iHv----VDLDG---A~~--g~~~N~~~i~~I~~~~-~~~vQvGGGIRs~e~v~~ll~~Gv~ 97 (241)
T TIGR00007 28 DDPVEAAKKWEEFQGAKRIHV----VDLDG---ALE--GGPVNLEVIKKIVEEL-GVPVQVGGGIRSLEDVEKLLDLGVD 97 (241)
T ss_pred CCHHHHHHHHHHCCCCCEEEE----EECCH---HHC--CCCCHHHHHHHHHHHC-CCCEEECCCCCCHHHHHHHHHCCCC
T ss_conf 898999999984169715999----84510---006--8620078999999861-8517981751688999999973985
Q ss_pred CEEEECCCCCHHHHHHHHHHHHC
Q ss_conf 23441220001243999999871
Q gi|254781167|r 212 GVMIGRAAYKNSAMLTTVDEYFS 234 (322)
Q Consensus 212 gvMigRga~~~P~if~~I~~~l~ 234 (322)
T Consensus 98 RVI~GT~A~~~~~~v~~~~~~~g 120 (241)
T TIGR00007 98 RVIIGTAAVENPDLVKELLKEYG 120 (241)
T ss_pred EEEEEEEEECCHHHHHHHHHHHC
T ss_conf 79973322108699999999848