HHsearch alignment for GI: 254781167 and conserved domain: TIGR00736
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative; InterPro: IPR005270 The function of this family is unknown, but it may include TIM-barrel proteins..
Probab=99.50 E-value=9.7e-14 Score=121.10 Aligned_cols=207 Identities=20% Similarity=0.303 Sum_probs=152.3
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEE-CCC------C-CCHHHHCCCHHHHH--------------HCCCC-CCCEEEEEECC
Q ss_conf 97786078999999828982998-170------3-32477608978983--------------02745-78469998269
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNALLY-TEM------I-VADAILRGDKKNIL--------------GFSTQ-EKPLALQIGGA 57 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~~~-TEm------i-~a~~l~~~~~~~~~--------------~~~~~-e~p~~~Ql~g~ 57 (322)
T Consensus 1 MAGi~daeFCrK~k~y~f~-~V~lGGyNaDr~t~~A~r~i~kRGRkEF~f~~~e~~s~I~~~~~~~~Esr~~v~VnVr~~ 79 (234)
T TIGR00736 1 MAGISDAEFCRKLKDYLFA-LVTLGGYNADRETLKAARKIEKRGRKEFSFDLEELESIIKKEAKKIKESRAKVAVNVRIS 79 (234)
T ss_pred CCCCCCHHHHHHHHHHHCE-EEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 9988524555444341100-312256303389999899998558940012532245788876676422035257886530
Q ss_pred CHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC-CCCCCCCCCCH
Q ss_conf 98999998875310453777442564136776668899998558999999999850279069998611-34566532201
Q gi|254781167|r 58 DISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRI-GVDDQIPAVAL 136 (322)
Q Consensus 58 ~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~Rl-G~~~~~~~~~~ 136 (322)
T Consensus 80 ~le~~~~v~~~~ae~-~diiEiNaHCRQPEiteiG~Gq~ll~n~e~L~ef~~k~~G~~~~p~fvKIRgN~~-----~ld~ 153 (234)
T TIGR00736 80 DLEEELDVELLVAEF-ADIIEINAHCRQPEITEIGIGQELLKNKELLKEFVAKVKGKLRKPVFVKIRGNVI-----KLDE 153 (234)
T ss_pred CCHHHHHHHHHHHHH-CCEEEECCCCCCCCEEEECCCHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCC-----CCCH
T ss_conf 000456776654211-3737885758897615505653542380257888753034314723789715787-----5103
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEE
Q ss_conf 455432000122012100135664025774212276610467876667388753025777789989888742-0352344
Q gi|254781167|r 137 RNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMI 215 (322)
Q Consensus 137 ~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMi 215 (322)
T Consensus 154 ~~~a~~l~d~g~d~iHvD---am~PG----~----~~aD~~l~~~~se~~nD~I~IGNNS~~dIE~a~~~l~aGad~vSv 222 (234)
T TIGR00736 154 LKVARKLVDAGVDAIHVD---AMKPG----E----DRADLDLVKLVSEVKNDKIVIGNNSVDDIESAKEMLKAGADAVSV 222 (234)
T ss_pred HHHHHHHHHHCCCEEEEE---EECCC----C----CCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 578789887323555543---22593----6----936789999988761885798068710368899999840158999
Q ss_pred ECCCCCHHHH
Q ss_conf 1220001243
Q gi|254781167|r 216 GRAAYKNSAM 225 (322)
Q Consensus 216 gRga~~~P~i 225 (322)
T Consensus 223 ARa~l~g~~~ 232 (234)
T TIGR00736 223 ARAVLKGEVE 232 (234)
T ss_pred HHHHHHCCCC
T ss_conf 9998611224