HHsearch alignment for GI: 254781167 and conserved domain: TIGR02151

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=95.74  E-value=0.011  Score=39.47  Aligned_cols=147  Identities=24%  Similarity=0.308  Sum_probs=90.1

Q ss_pred             CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf             998999998875310453777442564136776668899998558-9999999998502790699986113456653220
Q gi|254781167|r   57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNP-DIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVA  135 (322)
Q Consensus        57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p-~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~  135 (322)
T Consensus       136 ~g~~~~~~aid~i~Ad-AL~iHlN~~--QE~vqpEG-D----r~F~~G~l~~i~~~~~~~~vPVIvK-EvG~G--~S---  201 (349)
T TIGR02151       136 YGVEEAQEAIDMIEAD-ALAIHLNVL--QELVQPEG-D----RNFSKGWLEKIAEICSAVSVPVIVK-EVGFG--IS---  201 (349)
T ss_pred             CCHHHHHHHHHHHHHH-HHHHHHHHH--CCCCCCCC-C----HHHHHHHHHHHHHHHHHCCCCEEEE-ECCCC--CC---
T ss_conf             4889999999875101-335543233--02557999-7----0156538999999996528987998-21579--98---


Q ss_pred             HHHHHHHHCCCCCCHHHHHHH--HHH---HHCC--CCCCCCC--CCCCHHHH-------HHHHHH-HCCCCCCCCCCCCC
Q ss_conf             145543200012201210013--566---4025--7742122--76610467-------876667-38875302577778
Q gi|254781167|r  136 LRNLVKSIKKSGVNGIWIHAR--KAI---LKGL--SPKDNRK--IPNLDYDI-------VYEIKK-ENPDLFIGLNGGLE  198 (322)
Q Consensus       136 ~~~~~~~~~~~g~~~itiH~R--t~~---~~g~--s~~~~~~--~~~~~~~~-------i~~l~~-~~~~~~i~~NGdi~  198 (322)
T Consensus       202 -~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~Rr~~~~~~~~~r~a~~f~~WGipT~~sL~~~~~~~~~~~~~iASGG~r  280 (349)
T TIGR02151       202 -KEVAKLLADAGVKAIDVSGAGGTSWAAVENYRRAKESNQKYERLASAFSDWGIPTAASLLEVRSIDAPDAPLIASGGLR  280 (349)
T ss_pred             -HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             -8999999878900887078767559999988751575235788877774148866899999864212477368846777


Q ss_pred             CHHHHHHHHH-CCCCEEEECC
Q ss_conf             9989888742-0352344122
Q gi|254781167|r  199 DMSQALKILP-SVDGVMIGRA  218 (322)
Q Consensus       199 ~~~~a~~~l~-~~dgvMigRg  218 (322)
T Consensus       281 ~GlD~AKAlALGA~~~G~A~~  301 (349)
T TIGR02151       281 TGLDVAKALALGADAVGMARP  301 (349)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
T ss_conf             888999999962118888899