HHsearch alignment for GI: 254781167 and conserved domain: TIGR02151
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=95.74 E-value=0.011 Score=39.47 Aligned_cols=147 Identities=24% Similarity=0.308 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 998999998875310453777442564136776668899998558-9999999998502790699986113456653220
Q gi|254781167|r 57 ADISKLVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNP-DIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVA 135 (322)
Q Consensus 57 ~~p~~~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p-~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~ 135 (322)
T Consensus 136 ~g~~~~~~aid~i~Ad-AL~iHlN~~--QE~vqpEG-D----r~F~~G~l~~i~~~~~~~~vPVIvK-EvG~G--~S--- 201 (349)
T TIGR02151 136 YGVEEAQEAIDMIEAD-ALAIHLNVL--QELVQPEG-D----RNFSKGWLEKIAEICSAVSVPVIVK-EVGFG--IS--- 201 (349)
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHH--CCCCCCCC-C----HHHHHHHHHHHHHHHHHCCCCEEEE-ECCCC--CC---
T ss_conf 4889999999875101-335543233--02557999-7----0156538999999996528987998-21579--98---
Q ss_pred HHHHHHHHCCCCCCHHHHHHH--HHH---HHCC--CCCCCCC--CCCCHHHH-------HHHHHH-HCCCCCCCCCCCCC
Q ss_conf 145543200012201210013--566---4025--7742122--76610467-------876667-38875302577778
Q gi|254781167|r 136 LRNLVKSIKKSGVNGIWIHAR--KAI---LKGL--SPKDNRK--IPNLDYDI-------VYEIKK-ENPDLFIGLNGGLE 198 (322)
Q Consensus 136 ~~~~~~~~~~~g~~~itiH~R--t~~---~~g~--s~~~~~~--~~~~~~~~-------i~~l~~-~~~~~~i~~NGdi~ 198 (322)
T Consensus 202 -~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~Rr~~~~~~~~~r~a~~f~~WGipT~~sL~~~~~~~~~~~~~iASGG~r 280 (349)
T TIGR02151 202 -KEVAKLLADAGVKAIDVSGAGGTSWAAVENYRRAKESNQKYERLASAFSDWGIPTAASLLEVRSIDAPDAPLIASGGLR 280 (349)
T ss_pred -HHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf -8999999878900887078767559999988751575235788877774148866899999864212477368846777
Q ss_pred CHHHHHHHHH-CCCCEEEECC
Q ss_conf 9989888742-0352344122
Q gi|254781167|r 199 DMSQALKILP-SVDGVMIGRA 218 (322)
Q Consensus 199 ~~~~a~~~l~-~~dgvMigRg 218 (322)
T Consensus 281 ~GlD~AKAlALGA~~~G~A~~ 301 (349)
T TIGR02151 281 TGLDVAKALALGADAVGMARP 301 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
T ss_conf 888999999962118888899