HHsearch alignment for GI: 254781167 and conserved domain: cd00564
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=92.98 E-value=0.22 Score=29.95 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=57.4
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH-HCCCCEEEE
Q ss_conf 5543200012201210013566402577421227661046787666738875302577778998988874-203523441
Q gi|254781167|r 138 NLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKIL-PSVDGVMIG 216 (322)
Q Consensus 138 ~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l-~~~dgvMig 216 (322)
T Consensus 106 ~e~~~a~~~g~DYi~~gpvf---~T~t-K-~~~~~~~g~~~l~~~~~~~-~~Pv~AiGGI~~-~ni~~~~~~G~~giAv~ 178 (196)
T cd00564 106 EEALRAEELGADYVGFGPVF---PTPT-K-PGAGPPLGLELLREIAELV-EIPVVAIGGITP-ENAAEVLAAGADGVAVI 178 (196)
T ss_pred HHHHHHHHHCCCEEEECCCC---CCCC-C-CCCCCCCCHHHHHHHHHHC-CCCEEEECCCCH-HHHHHHHHCCCCEEEEH
T ss_conf 99999887099938864655---7898-8-8877877889999999867-999899858999-99999998099999972
Q ss_pred CCCCCHHHHHHHH
Q ss_conf 2200012439999
Q gi|254781167|r 217 RAAYKNSAMLTTV 229 (322)
Q Consensus 217 Rga~~~P~if~~I 229 (322)
T Consensus 179 s~i~~~~dp~~~~ 191 (196)
T cd00564 179 SAITGADDPAAAA 191 (196)
T ss_pred HHHHCCCCHHHHH
T ss_conf 9977799999999