HHsearch alignment for GI: 254781167 and conserved domain: cd02812
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=95.73 E-value=0.016 Score=38.33 Aligned_cols=83 Identities=13% Similarity=0.140 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCC
Q ss_conf 2201455432000122012100135664025774212276610467876667388753025777789989888742-035
Q gi|254781167|r 133 AVALRNLVKSIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVD 211 (322)
Q Consensus 133 ~~~~~~~~~~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~d 211 (322)
T Consensus 134 ~~~~~ayAlaae~lg~~~iYLEgS--------Ga---~v---~~e~V~~vk~~l~~~~LivGGGIrs~e~a~~~~~AgAD 199 (219)
T cd02812 134 PEDAAAYALAAEYLGMPIVYLEYS--------GA---YG---PPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGAD 199 (219)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECC--------CC---CC---CHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 899999999999829938999568--------99---79---99999999984679709992897999999999986999
Q ss_pred CEEEECCCCCHHHHHHHH
Q ss_conf 234412200012439999
Q gi|254781167|r 212 GVMIGRAAYKNSAMLTTV 229 (322)
Q Consensus 212 gvMigRga~~~P~if~~I 229 (322)
T Consensus 200 ~IVvGn~iee~~~~~l~~ 217 (219)
T cd02812 200 TIVVGNIVEEDPNAALET 217 (219)
T ss_pred EEEECCCEEECHHHHHHH
T ss_conf 999887224068999764