HHsearch alignment for GI: 254781167 and conserved domain: cd02911
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=0 Score=392.10 Aligned_cols=201 Identities=21% Similarity=0.314 Sum_probs=171.7
Q ss_pred CCCCCCHHHHHHHHHHCCCEE------EECCCCCCHHHHCCCHHHH-------------HHCCCCCCCEEEEEECCCHHH
Q ss_conf 977860789999998289829------9817033247760897898-------------302745784699982699899
Q gi|254781167|r 1 MVDWTDRHYRFFARLLTNNAL------LYTEMIVADAILRGDKKNI-------------LGFSTQEKPLALQIGGADISK 61 (322)
Q Consensus 1 Mag~Td~~fR~l~r~~~~~~~------~~TEmi~a~~l~~~~~~~~-------------~~~~~~e~p~~~Ql~g~~p~~ 61 (322)
T Consensus 7 MAGVTD~pFrr~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~ke~~~~~~~~~~~~~~~~~~~~~~pv~vQi~g~~~e~ 86 (233)
T cd02911 7 MAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVRSSSLEP 86 (233)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHH
T ss_conf 89995899999999837957972122018999999999971723212345101336788762246897189930699999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 99988753104537774425641367766688999985589999999998502790699986113456653220145543
Q gi|254781167|r 62 LVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVK 141 (322)
Q Consensus 62 ~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~ 141 (322)
T Consensus 87 ~~~Aa~~~~~~-~d~IDiN~GCP~~kV~~~g~GsaLl~dp~~~~~iv~avk~-~~~PVtvKiR~G~d~~-----~~~~a~ 159 (233)
T cd02911 87 LLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVDVD-----DEELAR 159 (233)
T ss_pred HHHHHHHHHCC-CCEEEEECCCCCHHHCCCCCHHHHCCCHHHHHHHHHHHHH-HCCCEEEEEECCCCCC-----HHHHHH
T ss_conf 99999997436-9999997999928983797537773898999999999985-3898427985699988-----899999
Q ss_pred HHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCC
Q ss_conf 2000122012100135664025774212276610467876667388753025777789989888742-035234412200
Q gi|254781167|r 142 SIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAY 220 (322)
Q Consensus 142 ~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~ 220 (322)
T Consensus 160 ~~e~aG~~~l~v~~~~------------~~~~ad~~~I~~~~~---~i~VigNGDI~s~eda~~~~~~G~DgVMIgRgAL 224 (233)
T cd02911 160 LIEKAGADIIHVDAMD------------PGNHADLKKIRDIST---ELFIIGNNSVTTIESAKEMFSYGADMVSVARASL 224 (233)
T ss_pred HHHHHCCCEEEEECCC------------CCCHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHCCCEEEECHHHC
T ss_conf 9998396079943207------------785089999998637---9879980896999999999985999999738755
Q ss_pred CHH
Q ss_conf 012
Q gi|254781167|r 221 KNS 223 (322)
Q Consensus 221 ~~P 223 (322)
T Consensus 225 ~n~ 227 (233)
T cd02911 225 PEN 227 (233)
T ss_pred CCC
T ss_conf 685