HHsearch alignment for GI: 254781167 and conserved domain: cd02911

>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00  E-value=0  Score=392.10  Aligned_cols=201  Identities=21%  Similarity=0.314  Sum_probs=171.7

Q ss_pred             CCCCCCHHHHHHHHHHCCCEE------EECCCCCCHHHHCCCHHHH-------------HHCCCCCCCEEEEEECCCHHH
Q ss_conf             977860789999998289829------9817033247760897898-------------302745784699982699899
Q gi|254781167|r    1 MVDWTDRHYRFFARLLTNNAL------LYTEMIVADAILRGDKKNI-------------LGFSTQEKPLALQIGGADISK   61 (322)
Q Consensus         1 Mag~Td~~fR~l~r~~~~~~~------~~TEmi~a~~l~~~~~~~~-------------~~~~~~e~p~~~Ql~g~~p~~   61 (322)
T Consensus         7 MAGVTD~pFrr~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~ke~~~~~~~~~~~~~~~~~~~~~~pv~vQi~g~~~e~   86 (233)
T cd02911           7 MAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVRSSSLEP   86 (233)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHH
T ss_conf             89995899999999837957972122018999999999971723212345101336788762246897189930699999


Q ss_pred             HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHH
Q ss_conf             99988753104537774425641367766688999985589999999998502790699986113456653220145543
Q gi|254781167|r   62 LVEAAKIVEDFGYNEINLNVGCPSARVHEGSFGACLMLNPDIVGDCIAAMCKALSIPVTVKCRIGVDDQIPAVALRNLVK  141 (322)
Q Consensus        62 ~~~aa~~~~~~g~~~idlN~GCP~~~v~~~g~GaaLl~~p~~~~~iv~~~~~~~~~pvsvK~RlG~~~~~~~~~~~~~~~  141 (322)
T Consensus        87 ~~~Aa~~~~~~-~d~IDiN~GCP~~kV~~~g~GsaLl~dp~~~~~iv~avk~-~~~PVtvKiR~G~d~~-----~~~~a~  159 (233)
T cd02911          87 LLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVDVD-----DEELAR  159 (233)
T ss_pred             HHHHHHHHHCC-CCEEEEECCCCCHHHCCCCCHHHHCCCHHHHHHHHHHHHH-HCCCEEEEEECCCCCC-----HHHHHH
T ss_conf             99999997436-9999997999928983797537773898999999999985-3898427985699988-----899999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-CCCCEEEECCCC
Q ss_conf             2000122012100135664025774212276610467876667388753025777789989888742-035234412200
Q gi|254781167|r  142 SIKKSGVNGIWIHARKAILKGLSPKDNRKIPNLDYDIVYEIKKENPDLFIGLNGGLEDMSQALKILP-SVDGVMIGRAAY  220 (322)
Q Consensus       142 ~~~~~g~~~itiH~Rt~~~~g~s~~~~~~~~~~~~~~i~~l~~~~~~~~i~~NGdi~~~~~a~~~l~-~~dgvMigRga~  220 (322)
T Consensus       160 ~~e~aG~~~l~v~~~~------------~~~~ad~~~I~~~~~---~i~VigNGDI~s~eda~~~~~~G~DgVMIgRgAL  224 (233)
T cd02911         160 LIEKAGADIIHVDAMD------------PGNHADLKKIRDIST---ELFIIGNNSVTTIESAKEMFSYGADMVSVARASL  224 (233)
T ss_pred             HHHHHCCCEEEEECCC------------CCCHHHHHHHHHHCC---CCEEEEECCCCCHHHHHHHHHHCCCEEEECHHHC
T ss_conf             9998396079943207------------785089999998637---9879980896999999999985999999738755


Q ss_pred             CHH
Q ss_conf             012
Q gi|254781167|r  221 KNS  223 (322)
Q Consensus       221 ~~P  223 (322)
T Consensus       225 ~n~  227 (233)
T cd02911         225 PEN  227 (233)
T ss_pred             CCC
T ss_conf             685